Query 020105
Match_columns 331
No_of_seqs 177 out of 633
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05495 Bromo_cbp_like Bromodo 100.0 6.9E-29 1.5E-33 206.2 11.6 102 226-330 3-107 (108)
2 cd05507 Bromo_brd8_like Bromod 100.0 8E-29 1.7E-33 204.2 11.3 99 228-329 5-103 (104)
3 cd05505 Bromo_WSTF_like Bromod 100.0 8.5E-29 1.8E-33 202.4 10.7 96 228-326 2-97 (97)
4 cd05497 Bromo_Brdt_I_like Brom 100.0 1.3E-28 2.9E-33 204.3 11.2 95 231-328 10-106 (107)
5 cd05504 Bromo_Acf1_like Bromod 99.9 7.5E-28 1.6E-32 202.1 11.3 101 225-328 11-111 (115)
6 cd05496 Bromo_WDR9_II Bromodom 99.9 9E-28 1.9E-32 203.3 11.2 99 228-329 7-106 (119)
7 cd05508 Bromo_RACK7 Bromodomai 99.9 1.3E-27 2.8E-32 196.3 10.6 95 228-326 5-99 (99)
8 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.4E-27 3.1E-32 194.2 10.6 95 229-326 3-97 (97)
9 cd05509 Bromo_gcn5_like Bromod 99.9 4.4E-27 9.6E-32 191.6 11.4 98 228-328 3-100 (101)
10 cd05520 Bromo_polybromo_III Br 99.9 4.1E-27 8.8E-32 194.2 10.4 97 228-325 2-102 (103)
11 cd05510 Bromo_SPT7_like Bromod 99.9 6.2E-27 1.3E-31 196.1 11.4 100 226-328 7-108 (112)
12 cd05512 Bromo_brd1_like Bromod 99.9 8.5E-27 1.8E-31 190.8 10.5 90 229-321 4-93 (98)
13 cd05502 Bromo_tif1_like Bromod 99.9 1.8E-26 3.8E-31 191.3 11.4 101 226-330 4-107 (109)
14 cd05513 Bromo_brd7_like Bromod 99.9 1.4E-26 3E-31 189.9 10.5 94 228-324 3-96 (98)
15 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.6E-26 3.4E-31 191.6 10.5 100 228-328 3-106 (107)
16 cd05506 Bromo_plant1 Bromodoma 99.9 2.2E-26 4.8E-31 186.7 11.0 95 229-326 3-99 (99)
17 cd05528 Bromo_AAA Bromodomain; 99.9 2.1E-26 4.6E-31 192.8 11.1 98 230-330 7-108 (112)
18 cd05499 Bromo_BDF1_2_II Bromod 99.9 3.1E-26 6.6E-31 187.4 10.8 98 228-326 2-102 (102)
19 cd05511 Bromo_TFIID Bromodomai 99.9 4.9E-26 1.1E-30 190.2 11.5 98 228-328 2-99 (112)
20 cd05498 Bromo_Brdt_II_like Bro 99.9 4.5E-26 9.7E-31 186.0 10.8 98 228-326 2-102 (102)
21 cd05500 Bromo_BDF1_2_I Bromodo 99.9 4.4E-26 9.6E-31 187.1 10.8 97 227-326 5-103 (103)
22 KOG1474 Transcription initiati 99.9 1.6E-26 3.5E-31 241.1 10.4 101 225-328 221-323 (640)
23 cd05515 Bromo_polybromo_V Brom 99.9 9E-26 2E-30 186.4 10.6 97 229-326 3-103 (105)
24 cd05524 Bromo_polybromo_I Brom 99.9 1.4E-25 3E-30 187.9 10.8 101 229-330 5-109 (113)
25 cd05501 Bromo_SP100C_like Brom 99.9 4.7E-25 1E-29 182.6 11.2 97 228-330 4-100 (102)
26 cd05525 Bromo_ASH1 Bromodomain 99.9 5.6E-25 1.2E-29 182.6 10.2 97 228-325 4-104 (106)
27 cd05517 Bromo_polybromo_II Bro 99.9 5.8E-25 1.3E-29 181.4 10.1 96 228-324 2-101 (103)
28 smart00297 BROMO bromo domain. 99.9 1E-24 2.2E-29 176.7 11.2 98 228-328 9-106 (107)
29 cd05519 Bromo_SNF2 Bromodomain 99.9 9.4E-25 2E-29 179.3 10.6 97 228-325 2-102 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 1E-24 2.2E-29 180.1 10.1 95 229-324 3-101 (103)
31 cd05529 Bromo_WDR9_I_like Brom 99.9 1.3E-24 2.8E-29 185.6 11.0 101 225-328 23-127 (128)
32 PF00439 Bromodomain: Bromodom 99.9 8.5E-24 1.8E-28 164.4 9.9 84 231-317 1-84 (84)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.6E-23 3.4E-28 172.9 10.4 96 229-325 4-103 (104)
34 cd04369 Bromodomain Bromodomai 99.9 1.9E-23 4.1E-28 163.1 10.2 94 229-325 3-98 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 6.8E-23 1.5E-27 170.2 10.6 96 229-327 4-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.9E-22 6.3E-27 167.6 11.2 96 231-329 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 4.9E-19 1.1E-23 148.6 10.3 98 228-328 5-106 (110)
38 KOG1245 Chromatin remodeling c 99.8 2.7E-19 5.9E-24 199.2 8.3 96 231-330 1306-1401(1404)
39 COG5076 Transcription factor i 99.7 2E-18 4.3E-23 169.5 6.9 83 245-328 165-247 (371)
40 KOG1472 Histone acetyltransfer 99.6 1.1E-16 2.3E-21 168.2 5.2 97 230-329 610-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 2.4E-13 5.1E-18 114.5 3.8 77 228-307 5-90 (114)
42 KOG0955 PHD finger protein BR1 99.3 3.9E-12 8.4E-17 138.8 7.3 100 226-328 565-664 (1051)
43 KOG0008 Transcription initiati 99.1 5.5E-11 1.2E-15 130.7 5.8 88 234-324 1390-1477(1563)
44 cd05491 Bromo_TBP7_like Bromod 99.1 9.4E-11 2E-15 99.8 4.3 43 266-309 62-104 (119)
45 KOG1827 Chromatin remodeling c 98.9 1.7E-09 3.6E-14 113.1 6.8 99 227-326 53-155 (629)
46 KOG0386 Chromatin remodeling c 98.9 3.2E-09 7E-14 114.9 6.9 98 229-327 1027-1128(1157)
47 KOG0008 Transcription initiati 98.9 3.5E-09 7.7E-14 116.8 7.0 100 224-326 1258-1358(1563)
48 KOG1472 Histone acetyltransfer 98.8 4.4E-09 9.4E-14 111.5 5.5 69 240-311 300-368 (720)
49 KOG1474 Transcription initiati 98.7 3.2E-09 6.9E-14 111.9 0.0 87 237-326 3-91 (640)
50 KOG1828 IRF-2-binding protein 98.7 3E-09 6.5E-14 105.5 -0.7 95 232-329 25-119 (418)
51 KOG1828 IRF-2-binding protein 98.4 1.7E-07 3.6E-12 93.3 3.7 88 229-320 211-298 (418)
52 COG5076 Transcription factor i 97.9 2.7E-06 5.9E-11 84.1 0.7 92 234-328 271-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 96.8 0.0021 4.5E-08 56.1 5.1 62 268-330 59-120 (131)
54 PF00249 Myb_DNA-binding: Myb- 95.9 0.0069 1.5E-07 43.0 2.8 30 3-40 17-47 (48)
55 smart00717 SANT SANT SWI3, AD 94.8 0.022 4.9E-07 38.4 2.3 33 3-43 17-49 (49)
56 cd00167 SANT 'SWI3, ADA2, N-Co 92.7 0.1 2.2E-06 34.7 2.5 30 3-40 15-44 (45)
57 KOG0732 AAA+-type ATPase conta 92.1 0.08 1.7E-06 59.5 2.1 62 246-308 533-601 (1080)
58 PF13837 Myb_DNA-bind_4: Myb/S 92.1 0.16 3.5E-06 39.6 3.2 37 8-48 35-71 (90)
59 PF13921 Myb_DNA-bind_6: Myb-l 91.9 0.092 2E-06 38.5 1.6 33 5-46 16-49 (60)
60 KOG0644 Uncharacterized conser 90.1 0.18 3.9E-06 55.5 2.3 59 268-327 1053-1111(1113)
61 smart00595 MADF subfamily of S 85.9 0.7 1.5E-05 36.1 2.7 30 8-46 28-57 (89)
62 PF12776 Myb_DNA-bind_3: Myb/S 79.1 2.4 5.2E-05 33.4 3.4 36 8-46 32-67 (96)
63 TIGR02606 antidote_CC2985 puta 75.8 4 8.7E-05 31.6 3.7 27 272-299 12-38 (69)
64 PF10545 MADF_DNA_bdg: Alcohol 69.5 4.3 9.3E-05 30.6 2.5 32 8-46 27-58 (85)
65 PF05377 FlaC_arch: Flagella a 66.2 8.7 0.00019 29.1 3.5 32 70-101 1-32 (55)
66 PLN03212 Transcription repress 65.7 3.7 8.1E-05 39.6 1.8 29 3-39 41-70 (249)
67 PF03693 RHH_2: Uncharacterise 65.3 7.5 0.00016 31.1 3.2 27 272-299 15-41 (80)
68 PF12949 HeH: HeH/LEM domain; 53.4 5.2 0.00011 27.5 0.3 22 66-87 1-22 (35)
69 KOG4282 Transcription factor G 51.1 16 0.00035 35.8 3.5 37 7-47 83-119 (345)
70 PF13873 Myb_DNA-bind_5: Myb/S 49.2 27 0.00058 26.6 3.8 33 8-43 39-71 (78)
71 PLN03091 hypothetical protein; 46.8 11 0.00025 39.2 1.7 28 3-38 30-58 (459)
72 KOG0644 Uncharacterized conser 46.2 5.7 0.00012 44.4 -0.5 86 224-322 72-187 (1113)
73 COG5259 RSC8 RSC chromatin rem 45.0 13 0.00027 39.2 1.7 25 8-40 299-323 (531)
74 KOG1827 Chromatin remodeling c 44.9 2.3 5E-05 45.8 -3.6 67 253-320 220-286 (629)
75 PF04859 DUF641: Plant protein 44.6 85 0.0018 27.6 6.6 62 36-98 56-123 (131)
76 KOG4466 Component of histone d 43.9 31 0.00067 34.1 4.1 21 81-101 114-134 (291)
77 COG5067 DBF4 Protein kinase es 40.3 16 0.00034 37.7 1.6 34 30-68 425-466 (468)
78 PF08172 CASP_C: CASP C termin 39.5 39 0.00084 32.5 4.0 33 68-100 92-124 (248)
79 cd02987 Phd_like_Phd Phosducin 38.8 20 0.00044 32.1 1.9 19 60-78 37-55 (175)
80 COG5509 Uncharacterized small 37.4 45 0.00097 25.9 3.3 34 61-101 17-50 (65)
81 PF07716 bZIP_2: Basic region 37.0 72 0.0016 23.1 4.3 34 65-98 21-54 (54)
82 PF02037 SAP: SAP domain; Int 36.1 21 0.00045 24.0 1.2 31 66-96 1-32 (35)
83 PF03962 Mnd1: Mnd1 family; I 36.0 49 0.0011 30.3 4.0 38 65-102 65-102 (188)
84 PF06005 DUF904: Protein of un 32.0 78 0.0017 24.9 4.0 34 68-101 24-57 (72)
85 COG5481 Uncharacterized conser 31.3 87 0.0019 24.4 4.0 31 68-98 10-46 (67)
86 cd02988 Phd_like_VIAF Phosduci 29.2 39 0.00085 30.8 2.2 18 61-78 59-76 (192)
87 COG3826 Uncharacterized protei 29.0 32 0.00069 32.4 1.5 36 2-37 5-41 (236)
88 PF08826 DMPK_coil: DMPK coile 25.1 1.8E+02 0.0039 22.4 4.8 39 61-99 15-55 (61)
89 PF07882 Fucose_iso_N2: L-fuco 25.0 44 0.00095 31.0 1.7 54 253-308 18-71 (181)
90 COG3609 Predicted transcriptio 24.2 1.1E+02 0.0023 24.7 3.6 29 271-300 14-42 (89)
91 PRK04239 hypothetical protein; 23.7 1.2E+02 0.0026 26.0 3.9 18 63-80 3-20 (110)
92 smart00586 ZnF_DBF Zinc finger 22.1 42 0.00091 24.8 0.8 16 31-46 9-32 (49)
93 smart00338 BRLZ basic region l 21.8 1.8E+02 0.0038 21.7 4.2 33 67-99 24-56 (65)
94 PF09036 Bcr-Abl_Oligo: Bcr-Ab 20.5 1.3E+02 0.0028 24.3 3.3 29 63-93 22-50 (79)
95 PF14502 HTH_41: Helix-turn-he 20.3 85 0.0018 23.2 2.1 28 69-99 7-34 (48)
No 1
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=6.9e-29 Score=206.21 Aligned_cols=102 Identities=22% Similarity=0.383 Sum_probs=97.5
Q ss_pred cchhHHHHHHHHHHhc-CCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 226 AESEPLIRLLDLIRTH-NHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~h-k~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
...+.|+.+|+.|.+| +. ||+|.+||++. ++||||++|++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 3 ~l~~~~~~il~~l~~~~~~--s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~ 79 (108)
T cd05495 3 ELRQALMPTLEKLYKQDPE--SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPW-QYVDDVWLMFDNAW 79 (108)
T ss_pred HHHHHHHHHHHHHHHcCcc--cchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHH
Confidence 4456799999999999 99 99999999986 7999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
.||+++|.+|.+|..|+++|.++|+..|
T Consensus 80 ~yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 80 LYNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876
No 2
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8e-29 Score=204.23 Aligned_cols=99 Identities=24% Similarity=0.414 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
.+.|+.||+.|.+|+. +++|.+||+...+|+||++|++||||+||++||++|.|.++. +|.+||.|||+||+.||++
T Consensus 5 ~~~~~~il~~l~~~~~--a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~ 81 (104)
T cd05507 5 KKAILLVYRTLASHRY--ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTA-EFQRDVLLMFQNAIMYNSS 81 (104)
T ss_pred HHHHHHHHHHHHcCCC--CHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 3569999999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 020105 308 ASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
++.+|.+|..|+..+.+.|..-
T Consensus 82 ~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 82 DHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998753
No 3
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.5e-29 Score=202.36 Aligned_cols=96 Identities=25% Similarity=0.398 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
.+.|..||+.|++|+. +|+|..||++.++||||+||++||||+||++||++|.|.++. +|.+||.|||+||+.||++
T Consensus 2 ~~~c~~il~~l~~~~~--s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05505 2 LQKCEEILSKILKYRF--SWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQ-EFLDDMKLVFSNAEKYYEN 78 (97)
T ss_pred HHHHHHHHHHHHhCCC--cccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 4679999999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 020105 308 ASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m 326 (331)
+|.++.+|..|+++|...+
T Consensus 79 ~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 79 GSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.3e-28 Score=204.30 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
+..||+.|++|+. ||||.+|||+. ++||||+||++||||+||++||++|.|.++. +|..||.|||.||+.||+++
T Consensus 10 ~~~il~~l~~~~~--s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 86 (107)
T cd05497 10 LKVVLKALWKHKF--AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSAS-ECIQDFNTMFTNCYIYNKPG 86 (107)
T ss_pred HHHHHHHHHhCCc--CccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 4577999999999 99999999986 7999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 020105 309 SLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 309 S~~~~~A~~Lr~l~~k~m~k 328 (331)
|+++.+|..|+++|.++|.+
T Consensus 87 s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 87 DDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999864
No 5
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=7.5e-28 Score=202.12 Aligned_cols=101 Identities=24% Similarity=0.414 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
..+.+.|..||+.|..|+. +|+|.+||+...+|+||++|++||||+||++||++|.|.++. +|..||.|||+||+.|
T Consensus 11 ~~~~~~c~~il~~l~~~~~--s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~-~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKD--SWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAE-EFLSDIQLVFSNCFLY 87 (115)
T ss_pred HHHHHHHHHHHHHHHhCCC--chhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4566789999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
|+++|++|.+|..|+.+|.++|++
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~ 111 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRK 111 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976
No 6
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=9e-28 Score=203.30 Aligned_cols=99 Identities=21% Similarity=0.397 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
.+.|..||+.|++|+. +|+|.+||++.++||||+||++||||+||+.||.+|.|.++. +|..||.|||.||+.||++
T Consensus 7 ~~~c~~il~~l~~~~~--s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~-ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 7 KKQCKELVNLMWDCED--SEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPM-EFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHhCCc--cccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 3568999999999999 999999999999999999999999999999999999999999 9999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhh
Q 020105 308 -ASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 308 -~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
+|.+|.+|..|..+|.++|++-
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l 106 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKI 106 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=196.30 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
+.-|..+++.++ |+. +|+|..||++.++||||++|++||||+||++||++|.|.++. +|.+||.|||.||+.||++
T Consensus 5 ~~~L~~~~~~~~-~~~--s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 5 SKLLKFALERMK-QPG--AEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTD-AFLADAKWILHNAIIYNGG 80 (99)
T ss_pred HHHHHHHHHHHh-CcC--cchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 456788889998 999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 020105 308 ASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m 326 (331)
+|.++.+|..|.+++..+|
T Consensus 81 ~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 81 DHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred CCHHHHHHHHHHHHHHhhC
Confidence 9999999999999988765
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.4e-27 Score=194.20 Aligned_cols=95 Identities=21% Similarity=0.398 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
..|..||+.|..|+. +++|.+||++..+|+|+++|++||||+||++||++|.|.++. +|..||.|||.||+.||+++
T Consensus 3 ~~c~~il~~l~~~~~--~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 3 ALCETILDEMEAHED--AWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLE-EFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHcCCC--chhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 468999999999999 999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 020105 309 SLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 309 S~~~~~A~~Lr~l~~k~m 326 (331)
|.++++|..|+++|.+.|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998864
No 9
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.4e-27 Score=191.61 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
...|..||+.|.+|+. +++|.+||++.++|+|+++|++||||+||++||.+|.|.++. +|..||.|||.||+.||++
T Consensus 3 ~~~~~~il~~l~~~~~--a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 3 YTQLKKVLDSLKNHKS--AWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLE-EFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred HHHHHHHHHHHHhCCC--chhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 3568999999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020105 308 ASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+|.++.+|..|+++|.+.|++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999875
No 10
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=4.1e-27 Score=194.24 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
++||..|++.|+++++ .++++|.+|++..++||||++|++||||+||+.||++|.|.++. +|..||.|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~ 80 (103)
T cd05520 2 SNPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLE-ELEADLNLMFENAKR 80 (103)
T ss_pred CchHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 6899999999999986 37999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 020105 304 YFPKASLESEAAHQLRNLVSNE 325 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k~ 325 (331)
||+++|.+|.+|..|+++|.+.
T Consensus 81 yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 81 YNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 11
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.2e-27 Score=196.13 Aligned_cols=100 Identities=21% Similarity=0.382 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHhc-CCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 226 AESEPLIRLLDLIRTH-NHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~h-k~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
.-.+.|..||+.|++| +. +|+|.+||++.++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.|
T Consensus 7 ~~~~~~~~il~~l~~~~~~--s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~Li~~N~~~y 83 (112)
T cd05510 7 EFYESLDKVLNELKTYTEH--STPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKA-EFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHhcCcc--ccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3456799999999999 88 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHh
Q 020105 305 FPKAS-LESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 305 N~~~S-~~~~~A~~Lr~l~~k~m~k 328 (331)
|++++ +++++|..|++++.+.|..
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~ 108 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKL 108 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99765 7889999999999998764
No 12
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.5e-27 Score=190.77 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
..|..+|+.|+.|+. +|+|.+||+..++|+|+++|++||||+||++||.+|.|.++. +|..||.|||.||+.||+++
T Consensus 4 ~~l~~il~~l~~~~~--~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 4 VLLRKTLDQLQEKDT--AEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLE-DFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHhCCC--chhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 468899999999999 999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 020105 309 SLESEAAHQLRNL 321 (331)
Q Consensus 309 S~~~~~A~~Lr~l 321 (331)
|.+|++|..|++.
T Consensus 81 s~~~~~A~~l~~~ 93 (98)
T cd05512 81 TIFYRAAVRLRDQ 93 (98)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999875
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.8e-26 Score=191.27 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=96.1
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhc---CCccCcHHHHHHHHHHHHHHHh
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVER---GSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~---g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
.+..-|..||..|..|+. +++|.+||++ +.|+|+++|++||||+||++||+. |.|.++. +|.+||.|||+||+
T Consensus 4 ~~~~~c~~il~~l~~~~~--s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~-~f~~D~~li~~Na~ 79 (109)
T cd05502 4 IDQRKCERLLLELYCHEL--SLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPE-EFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHhCCC--ChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHHHHHH
Confidence 455679999999999999 9999999998 899999999999999999999998 6999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
.||+++|.++.+|..|+++|.+.|++.|
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998765
No 14
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=189.92 Aligned_cols=94 Identities=17% Similarity=0.328 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
.+-|..||+.|+.|+. +++|..||+...+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.||++
T Consensus 3 ~~~l~~il~~l~~~~~--~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 3 QKALEQLIRQLQRKDP--HGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIE-EFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHcCCc--cccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 3558899999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 020105 308 ASLESEAAHQLRNLVSN 324 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k 324 (331)
+|.+|++|..|...-.+
T Consensus 80 ~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 80 DTIYYKAAKKLLHSGMK 96 (98)
T ss_pred CCHHHHHHHHHHHhhhh
Confidence 99999999999876543
No 15
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.6e-26 Score=191.62 Aligned_cols=100 Identities=23% Similarity=0.396 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
.+.|..||+.|.+|++ .++++|.+||+..++||||++|++||||+||++||++|.|.++. +|..||.|||.||+.
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~ 81 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLE-DLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 4678999999999887 37899999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 304 YFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
||+++|.+|.+|..|+++|...|++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-26 Score=186.69 Aligned_cols=95 Identities=23% Similarity=0.372 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCC
Q 020105 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306 (331)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 306 (331)
+.|..||+.|++|+. +++|..||++. ++|+|+++|++||||+||+.||++|.|.++. +|..||.|||.||+.||+
T Consensus 3 ~~c~~il~~l~~~~~--~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~-ef~~D~~li~~Na~~yn~ 79 (99)
T cd05506 3 KQCGTLLRKLMKHKW--GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPE-EFAADVRLTFANAMRYNP 79 (99)
T ss_pred HHHHHHHHHHHhCCC--CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 468999999999999 99999999976 7999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 020105 307 KASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 307 ~~S~~~~~A~~Lr~l~~k~m 326 (331)
++|.++.+|..|+.+|.+++
T Consensus 80 ~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 80 PGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998763
No 17
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.94 E-value=2.1e-26 Score=192.79 Aligned_cols=98 Identities=26% Similarity=0.416 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC-
Q 020105 230 PLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA- 308 (331)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~- 308 (331)
.|..||+.|++|+. +|+|.+||+++++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||+++
T Consensus 7 ~L~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~~s 83 (112)
T cd05528 7 FLRDVLKRLASDKR--FNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAK-DFLKDIDLIVTNALEYNPDRD 83 (112)
T ss_pred HHHHHHHHHHhCCC--chhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 48899999999999 999999999999999999999999999999999999999999 99999999999999999995
Q ss_pred ---CHHHHHHHHHHHHHHHHHHhhc
Q 020105 309 ---SLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 309 ---S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.++.+|..|++.|.+.+.+.+
T Consensus 84 ~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 84 PADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999987653
No 18
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.1e-26 Score=187.41 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHhcCC-CCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 228 SEPLIRLLDLIRTHNH-HLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~-~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
.+.|.+||+.|++++. .++|+|.+||++. +.|+||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~-ef~~D~~li~~N~~~y 80 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAK-EFERDVRLIFKNCYTF 80 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3568999999999653 2599999999998 9999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m 326 (331)
|+++|.++.+|..|+++|.+.|
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.9e-26 Score=190.22 Aligned_cols=98 Identities=17% Similarity=0.365 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
+..|..|++.|++|+. +++|..||++...|+||++|++||||+||++||.+|.|.++. +|..||.|||.||+.||++
T Consensus 2 ~~~l~~ii~~l~~~~~--s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 2 SFILDEIVNELKNLPD--SWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE-EFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred HHHHHHHHHHHHhCCC--chhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 3458899999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020105 308 ASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+|.++.+|..|+.+|...|..
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~ 99 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAE 99 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987753
No 20
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.5e-26 Score=186.02 Aligned_cols=98 Identities=18% Similarity=0.368 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCC-CCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 228 SEPLIRLLDLIRTHNH-HLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~-~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
.+.|..||+.|.+|+. .++++|.+||++. ++|+||++|++||||+||++||.+|.|.++. +|..||.|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 80 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQ-EFAADVRLMFSNCYKY 80 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4568999999999933 2399999999985 6999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m 326 (331)
|+++|.++.+|..|+++|.+.+
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 21
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.4e-26 Score=187.13 Aligned_cols=97 Identities=14% Similarity=0.302 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
..+.|++||+.|.+|+. +++|..||++. .+|+|+++|++||||+||+.||.+|.|.++. +|..||.|||+||+.|
T Consensus 5 ~~~~~~~ii~~l~~~~~--a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 81 (103)
T cd05500 5 QHKFLLSSIRSLKRLKD--ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVE-EFTADFNLMVDNCLTF 81 (103)
T ss_pred HHHHHHHHHHHHHcCCC--ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 34669999999999999 99999999975 7999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m 326 (331)
|+++|.++.+|..|++.|.+.|
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998865
No 22
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.93 E-value=1.6e-26 Score=241.14 Aligned_cols=101 Identities=22% Similarity=0.412 Sum_probs=95.7
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
......|..||..|++|++ +|||..|||+. ++||||+||++||||+|||.||++|.|.++. +|+.||+|||+||+
T Consensus 221 ~~~lk~C~~iLk~l~~~k~--awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~-eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKHKH--AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAE-EFAADVRLTFDNCM 297 (640)
T ss_pred HHHHHHHHHHHHHHHhccC--CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHH-HHHHHHHHHHHHHH
Confidence 3445679999999999999 99999999986 8999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
.||++++++|.||..|+.+|...|..
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~ 323 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWAS 323 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988865
No 23
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=9e-26 Score=186.39 Aligned_cols=97 Identities=22% Similarity=0.394 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
+.|..||+.|..+++ .++++|.+||+..+.||||++|++||||+||++||.+|.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~l~~~Na~~y 81 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLD-DMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 557888888888765 47999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m 326 (331)
|+++|++|.+|..|+++|.+.-
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.4e-25 Score=187.88 Aligned_cols=101 Identities=29% Similarity=0.332 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
+.|..||+.|+++++ .++.+|.++++...+|+||++|++||||+||++||++|.|.++. +|..||.|||+||+.|
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~y 83 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVD-DLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 458899999998666 25789999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
|+++|.+|.+|..|+++|.+.+++-+
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 25
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.7e-25 Score=182.57 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
...|-.||..|..|+. +++|..+ +..+||||++|++||||+||++||.+|+|.++. +|..||.|||+||+.||++
T Consensus 4 l~~ce~il~~l~~~~~--s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~-ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 4 LLKCEFLLLKVYCMSK--SGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVE-GFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHhCcc--cccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHcCC
Confidence 4558899999999999 9999774 458999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhc
Q 020105 308 ASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+ .++.+|..|.+.|.+.+++.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999998765
No 26
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.6e-25 Score=182.60 Aligned_cols=97 Identities=26% Similarity=0.341 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
.+.|..||+.|..+++ .++++|.+|++..+.||||++|++||||.||++||++|.|.++. +|..||.|||.||+.
T Consensus 4 ~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~-ef~~D~~l~f~Na~~ 82 (106)
T cd05525 4 AQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPE-AFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHH
Confidence 3558888888888777 47899999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 020105 304 YFPKASLESEAAHQLRNLVSNE 325 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k~ 325 (331)
||+++|.+|.+|..|+++|...
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999753
No 27
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=5.8e-25 Score=181.44 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
.+.|.+||+.|.++.+ .++++|.++++..+.||||++|++||||+||++||.+|.|.++. +|..||.|||.||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIE-DMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHHH
Confidence 4668899999998877 37899999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 020105 304 YFPKASLESEAAHQLRNLVSN 324 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k 324 (331)
||+++|.+|.+|..|+++|..
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 28
>smart00297 BROMO bromo domain.
Probab=99.92 E-value=1e-24 Score=176.66 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
...|..|++.+.+|+. +++|.+||+....|+|+++|++||||.||++||++|.|.++. +|..||.|||.||+.||++
T Consensus 9 ~~~~~~i~~~~~~~~~--~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~-ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 9 QSLLKAVLDKLDSHRL--SWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVE-EFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHhCcc--chhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 4558889999999988 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020105 308 ASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k 328 (331)
++.++.+|..|+.+|.+.|++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999875
No 29
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=9.4e-25 Score=179.27 Aligned_cols=97 Identities=21% Similarity=0.404 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
.+.|..||+.|.++++ .++++|.+|++..+.|+||++|++||||+||++||+.|.|.++. +|..||.|||.||+.
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~ 80 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLE-EFLEDFHLMFANART 80 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHH
Confidence 3568999999997664 36999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 020105 304 YFPKASLESEAAHQLRNLVSNE 325 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k~ 325 (331)
||+++|.+|.+|..|++.|.+.
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1e-24 Score=180.14 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
+-|..|++.|...++ .++.+|..||+..++||||++|++||||+||+.||.+|.|.++. +|..||.|||.||+.|
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~y 81 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEE-ELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 447777777777653 46999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSN 324 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k 324 (331)
|+++|++|.+|..|+++|.+
T Consensus 82 N~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=185.64 Aligned_cols=101 Identities=25% Similarity=0.274 Sum_probs=95.2
Q ss_pred ccchhHHHHHHHHHH---hcCCCCCccccccCCcc-cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIR---THNHHLPSLFERRLKSQ-ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~---~hk~~~a~~F~~PVd~~-e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
....+.++.+|+.|. .|+. +++|..||++. .+|+||++|++||||+||++||.+|.|.++. +|..||.|||.|
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~--~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~~N 99 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEI--AEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLE-ALRHDVRLILSN 99 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcc--cccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHH
Confidence 445566899999999 8988 99999999999 9999999999999999999999999999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
|+.||+++|.++.+|..|+.+|.+.|+.
T Consensus 100 a~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 100 AETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988753
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.90 E-value=8.5e-24 Score=164.40 Aligned_cols=84 Identities=30% Similarity=0.475 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASL 310 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~ 310 (331)
|..||+.|..|+. +++|.+||+....|+|+++|++||||.||++||++|.|.++. +|..||.|||.||+.||+++|+
T Consensus 1 C~~il~~l~~~~~--~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~-~f~~Dv~~i~~Na~~yn~~~s~ 77 (84)
T PF00439_consen 1 CREILEELMKHPI--SSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIE-EFEADVRLIFQNARRYNPPDSP 77 (84)
T ss_dssp HHHHHHHHHTSTT--GGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHH-HHHHHHHHHHHHHHHHSCTTSH
T ss_pred CHHHHHHHHcCCC--chhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHH-HHHHHHHHHHHHHHHHCCCcCH
Confidence 6789999999999 999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHH
Q 020105 311 ESEAAHQ 317 (331)
Q Consensus 311 ~~~~A~~ 317 (331)
+|.+|.+
T Consensus 78 ~~~~A~~ 84 (84)
T PF00439_consen 78 IYKAAEK 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999974
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.6e-23 Score=172.92 Aligned_cols=96 Identities=25% Similarity=0.341 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
+-+..||+.|++.++ .++++|.++++....|+||++|++||||+||++||..|.|.++. +|..||.|||.||+.|
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 82 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFD-QFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 346667777777544 36999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNE 325 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~ 325 (331)
|+++|.+|.+|..|++.|.+.
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999763
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.90 E-value=1.9e-23 Score=163.12 Aligned_cols=94 Identities=27% Similarity=0.429 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHhc--CCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCC
Q 020105 229 EPLIRLLDLIRTH--NHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306 (331)
Q Consensus 229 q~L~~iL~~L~~h--k~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 306 (331)
..|..|++.|..+ +. +++|..||+....|+|+++|++||||.||+.||..|.|.++. +|..||.|||.||+.||+
T Consensus 3 ~~~~~i~~~l~~~~~~~--~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~-~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 3 KKLRSLLDALKKLKRDL--SEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLE-EFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHhhcccc--cHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 4588999999999 88 999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 020105 307 KASLESEAAHQLRNLVSNE 325 (331)
Q Consensus 307 ~~S~~~~~A~~Lr~l~~k~ 325 (331)
+++.++.+|..|+.+|.+.
T Consensus 80 ~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6.8e-23 Score=170.23 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
+.|..+|+.|.+.++ .++.+|..+++..+.||||++|++||||+||++||++ |.++. +|..||.|||.||..|
T Consensus 4 ~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~-ef~~D~~li~~Na~~y 80 (106)
T cd05521 4 KKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQ-EFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHH
Confidence 457888888888776 3578999999989999999999999999999999998 99999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEIK 327 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~ 327 (331)
|+++|++|.+|..|+++|.+.|-
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998874
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.9e-22 Score=167.63 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=85.4
Q ss_pred HHHHHHHHHh-cCCCCCccccccCCc-----ccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 231 LIRLLDLIRT-HNHHLPSLFERRLKS-----QESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 231 L~~iL~~L~~-hk~~~a~~F~~PVd~-----~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
|-.++..+++ -|- .+||.-||.+ .++|+|+++|++||||+||++||++|.|+++. ||.+||.|||+||+.|
T Consensus 5 L~f~~~~~k~~lp~--~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 5 LKFIVSRMKSWLPP--DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLE-EFKADALLLLHNTAIF 81 (109)
T ss_pred HHHHHHHHHhcCcc--cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4456666666 455 7899999963 36999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
|+++|.++.+|..|.+.+..+|.+-
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888653
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.79 E-value=4.9e-19 Score=148.60 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhh
Q 020105 228 SEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIV 303 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~ 303 (331)
.+.|..|++.|++|.+ .++.+|.+.+. ..|+|+.+|++||||.+|+.||++|.|.+++ +|..||.|||+||..
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld-~~~~D~~lmf~NAr~ 81 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLD-KFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHH-HHHHHHHHHHHHHHH
Confidence 4568999999999997 47999999987 4578889999999999999999999999999 999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 304 YFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 304 YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
||.++|.+|..|.+|+.+|.+.-.+
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976443
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.78 E-value=2.7e-19 Score=199.21 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASL 310 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~ 310 (331)
|-.||..|..|+. ||||++||++..+||||+||++||||.||+.|+..|.|.+.. +|..||.|||.||..||.+ |.
T Consensus 1306 ~e~il~e~~~~~~--awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~e-ef~~Di~lvf~Nc~~yN~~-s~ 1381 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA--AWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPE-EFATDIELVFDNCETYNED-SE 1381 (1404)
T ss_pred HHHHHHHHHHhhh--cchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHH-HHHHHHHHHHHHHHHhccc-hh
Confidence 7899999999999 999999999999999999999999999999999999999999 9999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 020105 311 ESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 311 ~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+++++..|+++|.+.+++.+
T Consensus 1382 i~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1382 IGRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhhhcchHHHHHHHHHHhhc
Confidence 99999999999998766543
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.74 E-value=2e-18 Score=169.53 Aligned_cols=83 Identities=29% Similarity=0.419 Sum_probs=80.7
Q ss_pred CCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 020105 245 LPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSN 324 (331)
Q Consensus 245 ~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~l~~k 324 (331)
+.++|+.+|+..+.|+||.||+.||||.||++||+.|.|.++. +|..|++|||+||..||.+++.+|.+|..|+..+.+
T Consensus 165 ~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~e-ef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~ 243 (371)
T COG5076 165 LSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFE-EFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLK 243 (371)
T ss_pred cccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHh
Q 020105 325 EIKR 328 (331)
Q Consensus 325 ~m~k 328 (331)
.++.
T Consensus 244 ~i~~ 247 (371)
T COG5076 244 LIEE 247 (371)
T ss_pred HHHh
Confidence 8863
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=1.1e-16 Score=168.18 Aligned_cols=97 Identities=20% Similarity=0.394 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 020105 230 PLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKAS 309 (331)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S 309 (331)
.+..+|..|++|.+ +|||.+||...++||||.+|++||||.||+.+|..+.|.... .|++|+..||+||.+||+.++
T Consensus 610 ~~~~il~~l~~h~~--awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~-~f~ad~~~vf~ncr~yn~~~~ 686 (720)
T KOG1472|consen 610 AIQNILDQLQNHGD--AWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVE-LFMADVVRVFANCRMYNGSDT 686 (720)
T ss_pred HHHhHHhhhhcCCc--cCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHH-HHHHHHHHHHhhhhccCCccc
Confidence 46789999999999 999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020105 310 LESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 310 ~~~~~A~~Lr~l~~k~m~k~ 329 (331)
.+|++|..|..+|...|...
T Consensus 687 ~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 687 QYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred hheecccchhhhhcchhhhh
Confidence 99999999999999887653
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.38 E-value=2.4e-13 Score=114.52 Aligned_cols=77 Identities=9% Similarity=0.027 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCc--ccchhHHHhhccCCCHHHHHHHHhcCCc-------cCcHHHHHHHHHHHH
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKS--QESNEYKELVRQHVDLETIQTRVERGSY-------SACILTFYRDLLLLF 298 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~--~e~PdY~~iIk~PMDL~TIk~KL~~g~Y-------~S~~~EF~rDl~Lmf 298 (331)
.+.++.+|..+..|+. +|||..||++ .++||||++|++||||+||+.||.++.| .--. .+..++..++
T Consensus 5 ~~~~l~~l~~~~~~~~--~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (114)
T cd05494 5 LERVLRELKRHRRNED--AWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQE-DPADKQIDDE 81 (114)
T ss_pred HHHHHHHHHHhhhCCC--CCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccc-cccccccccc
Confidence 3456777777777778 9999999999 7999999999999999999999999733 3333 5666666666
Q ss_pred HHHhhhCCC
Q 020105 299 NNAIVYFPK 307 (331)
Q Consensus 299 ~NA~~YN~~ 307 (331)
.||.-||..
T Consensus 82 ~~~~~~~~~ 90 (114)
T cd05494 82 GRRSPSNIY 90 (114)
T ss_pred cccCccccc
Confidence 666666543
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.29 E-value=3.9e-12 Score=138.78 Aligned_cols=100 Identities=22% Similarity=0.415 Sum_probs=92.4
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
+....|..+|+.|+.... ..+|..|||..++|||.+||++||||.||+.++.+|.|.++. +|..|+.||+.||+.||
T Consensus 565 p~~kLl~~~l~~lq~kD~--~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle-~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDS--YGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLE-PIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred hHHHHHHHHHHHhhcccc--cCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhh-HHHHhHhHhHhHHHHhh
Confidence 334456688899999988 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020105 306 PKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 306 ~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
..++.+|.+|..|+++..+.+.+
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHh
Confidence 99999999999999988876543
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.12 E-value=5.5e-11 Score=130.73 Aligned_cols=88 Identities=17% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 020105 234 LLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESE 313 (331)
Q Consensus 234 iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~ 313 (331)
|..++.+-+. +|+|++||++..+|+||.+|++||||.||.+++....|.+.+ ||.+|+.||+.||..||+..+.+..
T Consensus 1390 ~vs~~~~ipe--s~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~-e~l~dv~~i~~n~~~~ng~e~~y~~ 1466 (1563)
T KOG0008|consen 1390 IVSQMKEIPE--SWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRS-EFLDDVNLIYVNSVEYNGAESAYTK 1466 (1563)
T ss_pred HHHHHHhcch--hcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHH-HHhhhhHhhcccceeecCccccccH
Confidence 3344556666 999999999999999999999999999999999999999999 9999999999999999999999888
Q ss_pred HHHHHHHHHHH
Q 020105 314 AAHQLRNLVSN 324 (331)
Q Consensus 314 ~A~~Lr~l~~k 324 (331)
-|.++-.+...
T Consensus 1467 k~~k~~ev~~~ 1477 (1563)
T KOG0008|consen 1467 KARKIGEVGLA 1477 (1563)
T ss_pred HHHHHHHHHHH
Confidence 88777554443
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.08 E-value=9.4e-11 Score=99.84 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=40.4
Q ss_pred ccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 020105 266 RQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKAS 309 (331)
Q Consensus 266 k~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S 309 (331)
-.||||+||++||.+|.|.+.. +|+.||.|||+||..||.++.
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~-~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPK-DFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHhCCHHH
Confidence 4599999999999999999999 999999999999999998843
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.91 E-value=1.7e-09 Score=113.08 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 227 ESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 227 ~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
-...+..||..+..+.+ .+...|.+..+....|+||.+|.+||-|..|++|+..+.|.+.+ .|+.|++||+.||.
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~-~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLS-FFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHH-HHHHHHHHHHHHHH
Confidence 33447788888888777 47889999999999999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m 326 (331)
.||.+++.+|+++..|...|....
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999998887654
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.86 E-value=3.2e-09 Score=114.89 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 229 EPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 229 q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
.++..|+.....|.+ .++.+|....+..+.||||.||++|||+..|+++|.++.|.+.. +...|+++||.||..|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLK-ELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHH-HHHHHHHhhcchhhhh
Confidence 568888888876665 25889999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 020105 305 FPKASLESEAAHQLRNLVSNEIK 327 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~ 327 (331)
|..+|.+|..|..|..++.....
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~ 1128 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQ 1128 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHH
Confidence 99999999999999998876543
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.85 E-value=3.5e-09 Score=116.83 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=89.9
Q ss_pred CccchhH-HHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 224 TYAESEP-LIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 224 ~~~~~q~-L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
|.+--++ |-.|+++++.-++ ..+|..||+..+++|||.||+.||||+|||+.|....|.+-. .|..|+.||+.|..
T Consensus 1258 P~V~~ss~l~~i~n~~~~~~~--t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~-~fle~~~~~~~ns~ 1334 (1563)
T KOG0008|consen 1258 PSVSLSSILETIINQARSSPN--TYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESRE-HFLEELPLIVSNST 1334 (1563)
T ss_pred CeeecccchHHHHHHHhcCCC--CcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHH-HHHHHhHHHhhchh
Confidence 3344444 6778899999999 999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEI 326 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m 326 (331)
+||++.+.+...|..+-.+....|
T Consensus 1335 ~yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1335 KYNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhh
Confidence 999999999999988877666555
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.80 E-value=4.4e-09 Score=111.45 Aligned_cols=69 Identities=22% Similarity=0.457 Sum_probs=65.8
Q ss_pred hcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHH
Q 020105 240 THNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLE 311 (331)
Q Consensus 240 ~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~ 311 (331)
.+++ +|+|..||+..++|+||.||+-||||.|+..|+..+.|.+.. +|..|+.+||.||..||...+..
T Consensus 300 ~~~~--s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~-~fv~d~~~~~~n~~~~n~ee~~~ 368 (720)
T KOG1472|consen 300 RTEH--STPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKE-EFVNDLMLIWRNCEKYNSEESHG 368 (720)
T ss_pred cccc--ccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchh-HHHHHHHHHHhcchhhccccchh
Confidence 5889 999999999999999999999999999999999999999999 99999999999999999976553
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.68 E-value=3.2e-09 Score=111.94 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=79.7
Q ss_pred HHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q 020105 237 LIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEA 314 (331)
Q Consensus 237 ~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~ 314 (331)
..+.|.+ +|+|..||+.. ..|+||.+|++|||++||..++++..|.+.. +..+|+.-+|.||..||.++-.+..+
T Consensus 3 ~~~~~~~--~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~-~~~~~f~~~~sn~~~~~~~~~~v~~~ 79 (640)
T KOG1474|consen 3 EARKHKL--AWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSAS-ECIADFKTKFSNCYLFNDSGDDVVRM 79 (640)
T ss_pred ccccccc--cccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHh-hhhhhccccccchhcccCCccchhhc
Confidence 3456766 99999999974 7999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020105 315 AHQLRNLVSNEI 326 (331)
Q Consensus 315 A~~Lr~l~~k~m 326 (331)
+..+..+|.+.+
T Consensus 80 ~~~~~~~~~~~~ 91 (640)
T KOG1474|consen 80 KQSLEKLFPKKL 91 (640)
T ss_pred cccchhhccccc
Confidence 999999887654
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.67 E-value=3e-09 Score=105.53 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHH
Q 020105 232 IRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLE 311 (331)
Q Consensus 232 ~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~ 311 (331)
-.++..+-+... -..|.-||.+.-.|+|.+||+.|||+.||+.||+.+.|.+.. +|.-|..||++||++||...+.+
T Consensus 25 ehhlrkl~sKdp--~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~-~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 25 EHHLRKLPSKDP--KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLS-QMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred HHHHHhccccCh--hhhhccccchhhccchHhhhhcccccccccccCCCccceech-hhhhhhcccccchhhhhcCCccc
Confidence 344455544444 567778898889999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 020105 312 SEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 312 ~~~A~~Lr~l~~k~m~k~ 329 (331)
+.+|..|+.+.....+..
T Consensus 102 ~~aaKrL~~v~~~~~qe~ 119 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGMTQER 119 (418)
T ss_pred cccccccchhhcchhhHH
Confidence 999999988776655443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.41 E-value=1.7e-07 Score=93.29 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
+.+.....++..-.. ...|..|+....+|.|.-+|++|+|+.|++.|+.+..|.| - +|..|+.||+.||++||.+.
T Consensus 211 ~l~~~q~~kl~~~~p--~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~-~f~~D~kl~~l~amT~gehs 286 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDP--VAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-L-SFTQDRKLIALKAVTNGEHS 286 (418)
T ss_pred HHHHHHHHHhcccCc--hhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-h-hhhcccchhhHHHHhcCCcc
Confidence 334445566666666 7889999999999999999999999999999999999999 5 99999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 020105 309 SLESEAAHQLRN 320 (331)
Q Consensus 309 S~~~~~A~~Lr~ 320 (331)
+.+|.+|+.+..
T Consensus 287 k~yyelank~lh 298 (418)
T KOG1828|consen 287 KSYYELANKQLH 298 (418)
T ss_pred hHHHHHHHhhhh
Confidence 999999987754
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.92 E-value=2.7e-06 Score=84.09 Aligned_cols=92 Identities=24% Similarity=0.351 Sum_probs=85.3
Q ss_pred HHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 020105 234 LLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESE 313 (331)
Q Consensus 234 iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~ 313 (331)
++..+..|-. +|+|.+|+.....|+|+++|..+||+.|++-++..+.|.... +|.+|..+++.||..||.....+++
T Consensus 271 ~i~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 271 LITNSQAHVG--AWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEE-TFVRDAKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred cccccccccc--cccccccCCcccccchhhhhhcccccccchhhhhcccCCCcc-ccccccchhhhcccccchhhhhhhh
Confidence 3344477878 999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 020105 314 AAHQLRNLVSNEIKR 328 (331)
Q Consensus 314 ~A~~Lr~l~~k~m~k 328 (331)
.+..+..+|.+.++-
T Consensus 348 ~~~~~~~~~~~~~~~ 362 (371)
T COG5076 348 NANVLEDFVIKKTRL 362 (371)
T ss_pred hccchhhhHhhhhhh
Confidence 999999999987754
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.79 E-value=0.0021 Score=56.09 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 268 HVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 268 PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
|-||.-+++|++.|.|.|+. +|-.||..|+.=++.=-+...+.-++-..+.-+|.+.|...+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~-~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVL-DFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred cccHHHHHHHHhccceehHH-HHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 88999999999999999999 999999999998887766666666666677888888887654
No 54
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=95.91 E-value=0.0069 Score=42.99 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||+.+|..||..|. +| |+..|+.+|..|
T Consensus 17 ~~~g~~~W~~Ia~~~~~~R--------t~~qc~~~~~~~ 47 (48)
T PF00249_consen 17 KKYGKDNWKKIAKRMPGGR--------TAKQCRSRYQNL 47 (48)
T ss_dssp HHSTTTHHHHHHHHHSSSS--------THHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHcCCCC--------CHHHHHHHHHhh
Confidence 3699999999999999 55 789999999876
No 55
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.81 E-value=0.022 Score=38.44 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (331)
..||..+|..||..+.+| |+..|+.+|..|.++
T Consensus 17 ~~~g~~~w~~Ia~~~~~r--------t~~~~~~~~~~~~~~ 49 (49)
T smart00717 17 KKYGKNNWEKIAKELPGR--------TAEQCRERWNNLLKP 49 (49)
T ss_pred HHHCcCCHHHHHHHcCCC--------CHHHHHHHHHHHcCC
Confidence 357889999999999755 789999999988653
No 56
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=92.73 E-value=0.1 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=25.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||...|+.||..|..| |+..|+.+|.-+
T Consensus 15 ~~~g~~~w~~Ia~~~~~r--------s~~~~~~~~~~~ 44 (45)
T cd00167 15 KKYGKNNWEKIAKELPGR--------TPKQCRERWRNL 44 (45)
T ss_pred HHHCcCCHHHHHhHcCCC--------CHHHHHHHHHHh
Confidence 368889999999999875 679999999765
No 57
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.08 Score=59.47 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=57.3
Q ss_pred CccccccCCcc-----cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHH--HHHHHHHHHhhhCCCC
Q 020105 246 PSLFERRLKSQ-----ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYR--DLLLLFNNAIVYFPKA 308 (331)
Q Consensus 246 a~~F~~PVd~~-----e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~r--Dl~Lmf~NA~~YN~~~ 308 (331)
...|-.|+++. ..++|-.+|+++||+...-.|+..+.|.++. +|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~-~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVR-SFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHH-hhhcccchhhhcCcHHhcCCCc
Confidence 67899999864 2679999999999999999999999999999 9999 9999999999999875
No 58
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=92.09 E-value=0.16 Score=39.57 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=29.5
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCCC
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDDP 48 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~~ 48 (331)
.-|..||.+|+.+-. - .||.-|+.||..|.++|-.-.
T Consensus 35 ~~w~~Ia~~l~~~G~---~-rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 35 KVWKEIAEELAEHGY---N-RTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp HHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCC---C-CCHHHHHHHHHHHHHHHHHHH
Confidence 479999999998853 2 499999999999999998643
No 59
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=91.94 E-value=0.092 Score=38.46 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=25.0
Q ss_pred CCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH-HHhhhcC
Q 020105 5 GGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD-LERRFND 46 (331)
Q Consensus 5 HGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d-L~rRfs~ 46 (331)
|| .+|..||..|-.| ||..|+.||.. |+...+.
T Consensus 16 ~g-~~W~~Ia~~l~~R--------t~~~~~~r~~~~l~~~~~~ 49 (60)
T PF13921_consen 16 YG-NDWKKIAEHLGNR--------TPKQCRNRWRNHLRPKISR 49 (60)
T ss_dssp HT-S-HHHHHHHSTTS---------HHHHHHHHHHTTSTTSTS
T ss_pred HC-cCHHHHHHHHCcC--------CHHHHHHHHHHHCcccccC
Confidence 56 4899999998545 78999999999 8766554
No 60
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.08 E-value=0.18 Score=55.50 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 020105 268 HVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRNLVSNEIK 327 (331)
Q Consensus 268 PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~l~~k~m~ 327 (331)
|.-|+.|+.+|++.+|.++. -|..|+..|..||.+|+..+-.+...+..|...|...+.
T Consensus 1053 pls~evi~~rlEn~yYrs~e-~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlp 1111 (1113)
T KOG0644|consen 1053 PLSLEVIRSRLENNYYRSQE-ALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLP 1111 (1113)
T ss_pred cccHHHHHHHHHhhhhhhhH-hhhcchhhhhcccceeecccccHHHHhhhcchhhhhhcc
Confidence 66789999999999999999 999999999999999999998777777777777766554
No 61
>smart00595 MADF subfamily of SANT domain.
Probab=85.87 E-value=0.7 Score=36.10 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=27.1
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
.+|..||.+|.. |+..|+.|+..|+.+|..
T Consensus 28 ~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~ 57 (89)
T smart00595 28 KAWEEIAEELGL---------SVEECKKRWKNLRDRYRR 57 (89)
T ss_pred HHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHH
Confidence 489999999976 789999999999999975
No 62
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=79.08 E-value=2.4 Score=33.36 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
..|..|+.++..++-.. .|...|+-||..|++.|..
T Consensus 32 ~~w~~i~~~~~~~~~~~---~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 32 EGWNNIAEEFNEKTGLN---YTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred HHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHHHHH
Confidence 46999999999976543 4999999999999999974
No 63
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=75.78 E-value=4 Score=31.64 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCccCcHHHHHHHHHHHHH
Q 020105 272 ETIQTRVERGSYSACILTFYRDLLLLFN 299 (331)
Q Consensus 272 ~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 299 (331)
..|+.++++|.|.|.+ |.++|.+.++.
T Consensus 12 ~~i~~~V~sG~Y~s~S-EVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSAS-EVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHH
Confidence 4689999999999999 99999998875
No 64
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=69.54 E-value=4.3 Score=30.63 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=26.5
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
.+|..||.++.... ++..|+.|+..|+.+|..
T Consensus 27 ~aw~~Ia~~l~~~~-------~~~~~~~~w~~Lr~~y~~ 58 (85)
T PF10545_consen 27 EAWQEIARELGKEF-------SVDDCKKRWKNLRDRYRR 58 (85)
T ss_pred HHHHHHHHHHccch-------hHHHHHHHHHHHHHHHHH
Confidence 47999999996542 678899999999998864
No 65
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.18 E-value=8.7 Score=29.08 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 020105 70 RVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 70 RVAELrrever~d~sIgsLq~kvk~L~eere~ 101 (331)
||.||-.+|.+-+.+|++++...+.|+++=++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999887554
No 66
>PLN03212 Transcription repressor MYB5; Provisional
Probab=65.68 E-value=3.7 Score=39.59 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHH
Q 020105 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
.+||..+|..||..+. .| |+..||.||..
T Consensus 41 ~kyG~~nW~~IAk~~g~gR--------T~KQCReRW~N 70 (249)
T PLN03212 41 KKEGEGRWRSLPKRAGLLR--------CGKSCRLRWMN 70 (249)
T ss_pred HHhCcccHHHHHHhhhcCC--------CcchHHHHHHH
Confidence 5799999999998763 34 78999999974
No 67
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=65.34 E-value=7.5 Score=31.05 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCccCcHHHHHHHHHHHHH
Q 020105 272 ETIQTRVERGSYSACILTFYRDLLLLFN 299 (331)
Q Consensus 272 ~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 299 (331)
.-|+.+|.+|.|.|.+ |+++|.+-++.
T Consensus 15 ~~i~~~V~sG~Y~s~S-EvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSAS-EVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence 3489999999999999 99999877764
No 68
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=53.39 E-value=5.2 Score=27.54 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=14.0
Q ss_pred HhHhhHHHHHHHHhhhhhhhHH
Q 020105 66 LRKVRVDELKRELQRCDLSILS 87 (331)
Q Consensus 66 LRklRVAELrrever~d~sIgs 87 (331)
+.+|+|++||+-+...++.+-|
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps 22 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPS 22 (35)
T ss_dssp STT--SHHHHHHHHHHT---SS
T ss_pred CCcCcHHHHHHHHHHcCCCCCC
Confidence 3589999999999988876643
No 69
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=51.13 E-value=16 Score=35.80 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=27.8
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 020105 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (331)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (331)
..-|.-||.-++-.- .+ -||.-|+.||..|.+||-..
T Consensus 83 ~~~We~va~k~~~~g-~~---rs~~qck~K~~nl~k~Yk~~ 119 (345)
T KOG4282|consen 83 GPLWEEVARKMAELG-YP---RSPKQCKAKIENLKKKYKKE 119 (345)
T ss_pred ccHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHHHHHHH
Confidence 567999998433221 12 39999999999999999754
No 70
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=49.22 E-value=27 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=28.3
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (331)
..|..||.+|-+..|. . .|+..|+.+|.+|+++
T Consensus 39 ~~W~~I~~~lN~~~~~--~-Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 39 KAWEEIAEELNALGPG--K-RSWKQLKKKWKNLKSK 71 (78)
T ss_pred HHHHHHHHHHHhcCCC--C-CCHHHHHHHHHHHHHH
Confidence 4699999999998763 3 4999999999999875
No 71
>PLN03091 hypothetical protein; Provisional
Probab=46.83 E-value=11 Score=39.17 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHH
Q 020105 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYR 38 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~ 38 (331)
..||..+|..||..+- .| |+..||.||.
T Consensus 30 ~kyG~~nWs~IAk~~g~gR--------T~KQCRERW~ 58 (459)
T PLN03091 30 TKYGHGCWSSVPKQAGLQR--------CGKSCRLRWI 58 (459)
T ss_pred HHhCcCCHHHHhhhhccCc--------CcchHhHHHH
Confidence 4699999999997653 23 7899999996
No 72
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=46.22 E-value=5.7 Score=44.35 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=63.0
Q ss_pred CccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCc--------------c-----
Q 020105 224 TYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSY--------------S----- 284 (331)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y--------------~----- 284 (331)
+.++..-|++|+.+|-- ++|.+..|.|-.+..-|.+|+|++..|.+-.| .
T Consensus 72 ~hI~kdhll~i~kqlv~-----------~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~ 140 (1113)
T KOG0644|consen 72 KHIAKDHLLQILKQLVP-----------MLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHAD 140 (1113)
T ss_pred cccchHHHHHHHHHhcc-----------CcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCc
Confidence 34555668888877732 45556778888999999999999999997666 2
Q ss_pred -----CcHHH------HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 020105 285 -----ACILT------FYRDLLLLFNNAIVYFPKASLESEAAHQLRNLV 322 (331)
Q Consensus 285 -----S~~~E------F~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~l~ 322 (331)
+.. + ...-..+|-.||..++.|+| .++-++.++++.
T Consensus 141 ~~~~~sl~-s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 141 QVRGVSLR-SIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred ccccceec-cCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHH
Confidence 222 2 55667788999999999999 555555555543
No 73
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=44.96 E-value=13 Score=39.16 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.4
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
++|+.||.=|+++ |++.|.+||-.|
T Consensus 299 DdW~kVA~HVgtK--------t~EqCIl~FL~L 323 (531)
T COG5259 299 DDWDKVARHVGTK--------TKEQCILHFLQL 323 (531)
T ss_pred hhHHHHHHHhCCC--------CHHHHHHHHHcC
Confidence 6899999999987 679999999776
No 74
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=44.91 E-value=2.3 Score=45.78 Aligned_cols=67 Identities=7% Similarity=0.001 Sum_probs=61.3
Q ss_pred CCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 020105 253 LKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRN 320 (331)
Q Consensus 253 Vd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~ 320 (331)
++-...|.|+.+++-||-+....+++..|.|.... .|..|+.++|-|+-.|+....-++..+..|..
T Consensus 220 ~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~-~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 220 PDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTS-LYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred cccccccceeEeeCCccCccccccchhcccceecc-cccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 34468999999999999999999999999999999 99999999999999999999988888877754
No 75
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.64 E-value=85 Score=27.58 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCccchHHHHhHh------hHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 020105 36 KYRDLERRFNDDPQPHNNNNHNVHVPWLEHLRKV------RVDELKRELQRCDLSILSLQLQVKKLEEE 98 (331)
Q Consensus 36 Ky~dL~rRfs~~~~~~~~~~~~~~~~W~eELRkl------RVAELrrever~d~sIgsLq~kvk~L~ee 98 (331)
+-.+|+++|......++ -......+-+.|+|.+ -|-+|..||..-|.-|..|..++..+...
T Consensus 56 ~Ls~LK~~y~~~~~~~~-~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPS-PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHcCCCCCC-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999987542111 0012334566788776 58899999999999999999999887654
No 76
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.87 E-value=31 Score=34.06 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHhhcC
Q 020105 81 CDLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 81 ~d~sIgsLq~kvk~L~eere~ 101 (331)
+|.-|++|+-|+++|+|+|.-
T Consensus 114 ke~l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 114 KENLISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999985
No 77
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=40.34 E-value=16 Score=37.74 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=22.1
Q ss_pred hHhHHHhHHHH--------HhhhcCCCCCCCCCCCCCccchHHHHhH
Q 020105 30 PQCCKQKYRDL--------ERRFNDDPQPHNNNNHNVHVPWLEHLRK 68 (331)
Q Consensus 30 p~~Cr~Ky~dL--------~rRfs~~~~~~~~~~~~~~~~W~eELRk 68 (331)
-++|+-||.+| ||||... +++=-+-+..|+-||+
T Consensus 425 CENCreky~~lE~Hi~s~~HrrFAEn-----d~NF~~lD~Lf~l~rr 466 (468)
T COG5067 425 CENCREKYESLEQHIVSEKHRRFAEN-----DLNFEALDSLFELLRR 466 (468)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhc-----ccchhhHHHHHHHhcC
Confidence 48999999998 6788632 1111445667776664
No 78
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.51 E-value=39 Score=32.46 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 020105 68 KVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (331)
Q Consensus 68 klRVAELrrever~d~sIgsLq~kvk~L~eere 100 (331)
|.|++||=.|+.+----|.+|+..|++|+.+=-
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999743
No 79
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=38.76 E-value=20 Score=32.07 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.8
Q ss_pred cchHHHHhHhhHHHHHHHH
Q 020105 60 VPWLEHLRKVRVDELKREL 78 (331)
Q Consensus 60 ~~W~eELRklRVAELrrev 78 (331)
+.-|+++|+.|++||+.+.
T Consensus 37 e~~l~~~R~~R~~el~~~~ 55 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKL 55 (175)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999984
No 80
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=37.38 E-value=45 Score=25.95 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=27.9
Q ss_pred chHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 020105 61 PWLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 61 ~W~eELRklRVAELrrever~d~sIgsLq~kvk~L~eere~ 101 (331)
.-=|+|-=|=|+||- --|+-||..+++|+.|+.+
T Consensus 17 i~~d~LsllsV~El~-------eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 17 IGNDALSLLSVAELE-------ERIALLQAEIERLKAELAK 50 (65)
T ss_pred cchhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 334568888999984 4599999999999999976
No 81
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.01 E-value=72 Score=23.12 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.6
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 020105 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEEE 98 (331)
Q Consensus 65 ELRklRVAELrrever~d~sIgsLq~kvk~L~ee 98 (331)
+=+|.++.+|..+|....-.+-.|+.+|..|+.|
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467888889999999888899999999999865
No 82
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=36.13 E-value=21 Score=24.02 Aligned_cols=31 Identities=35% Similarity=0.428 Sum_probs=21.4
Q ss_pred HhHhhHHHHHHHHhhhhhhhHH-HHHHHHHHH
Q 020105 66 LRKVRVDELKRELQRCDLSILS-LQLQVKKLE 96 (331)
Q Consensus 66 LRklRVAELrrever~d~sIgs-Lq~kvk~L~ 96 (331)
|-++.|+|||.++.+..+++.- =+.-|++|.
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~ 32 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLK 32 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 3578999999999999998743 333445554
No 83
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.05 E-value=49 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=33.8
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCC
Q 020105 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEEEREKP 102 (331)
Q Consensus 65 ELRklRVAELrrever~d~sIgsLq~kvk~L~eere~~ 102 (331)
.-|+.++++|..+++.....|..|+.+++.++.+|+.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45778899999999999999999999999999888763
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.03 E-value=78 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=29.9
Q ss_pred HhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 020105 68 KVRVDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 68 klRVAELrrever~d~sIgsLq~kvk~L~eere~ 101 (331)
+..|+||+.+........-.|+...++|+.+++.
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999998889999999999999998864
No 85
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=31.28 E-value=87 Score=24.38 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHhhhhhhhHHHH------HHHHHHHHh
Q 020105 68 KVRVDELKRELQRCDLSILSLQ------LQVKKLEEE 98 (331)
Q Consensus 68 klRVAELrrever~d~sIgsLq------~kvk~L~ee 98 (331)
++++|-||.|-+.+|.+|-.+. +.+.+|+.-
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkK 46 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKK 46 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4899999999999999998763 456666554
No 86
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=29.19 E-value=39 Score=30.83 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=16.0
Q ss_pred chHHHHhHhhHHHHHHHH
Q 020105 61 PWLEHLRKVRVDELKREL 78 (331)
Q Consensus 61 ~W~eELRklRVAELrrev 78 (331)
.-|+++|+.|++||+++-
T Consensus 59 ~~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 59 RFLEEYRRKRLAEMKALA 76 (192)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 489999999999999863
No 87
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=32 Score=32.45 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCCCCCCChhhHHHHHhhcCCC-CCCCCChHhHHHhH
Q 020105 2 GNVGGVGASMRLSVELQTKTSL-PHLLTTPQCCKQKY 37 (331)
Q Consensus 2 ~~rHGt~~WdsVA~Evq~Rs~~-~~~~~Tp~~Cr~Ky 37 (331)
++---|-+|..+|.|++.+--. ...+.||+.|+.--
T Consensus 5 ~~t~~~~dw~~~~~~l~~~gwa~~~~ll~P~~cr~~A 41 (236)
T COG3826 5 ANTSLTMDWTAIAAELDARGWALTGPLLTPETCRGVA 41 (236)
T ss_pred ccchhhchhHHHHHhhhcccceecccCCCccccchhh
Confidence 3444678999999999987532 22456999998743
No 88
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.13 E-value=1.8e+02 Score=22.35 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=32.2
Q ss_pred chHHHHhHhhHHHH--HHHHhhhhhhhHHHHHHHHHHHHhh
Q 020105 61 PWLEHLRKVRVDEL--KRELQRCDLSILSLQLQVKKLEEER 99 (331)
Q Consensus 61 ~W~eELRklRVAEL--rrever~d~sIgsLq~kvk~L~eer 99 (331)
..-+||+|.+-+-+ -.-|+-++.-+..|+.+|+.|+.+-
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999887754 5678889999999999999999874
No 89
>PF07882 Fucose_iso_N2: L-fucose isomerase, second N-terminal domain; InterPro: IPR012889 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=25.04 E-value=44 Score=30.98 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=39.1
Q ss_pred CCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 253 LKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 253 Vd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
|+++-..+|..|=...+|..-|-+|++.+.|.. . ||.+=+.-+=.||..|....
T Consensus 18 vd~~f~~~ylGmr~E~VD~~Ei~RR~e~~iyD~-~-E~e~A~~W~~~~~~~g~d~n 71 (181)
T PF07882_consen 18 VDPDFFQEYLGMRVEYVDMSEIIRRMEEGIYDE-E-EFEKALAWVKENCKEGDDKN 71 (181)
T ss_dssp --HHHHHHCT--EEEEE-THHHHHHHHCT-S-H-H-HHHHHHHHHHHHSEE---TS
T ss_pred cCHHHHHHHhCCCceeecHHHHHHHHHccCCCH-H-HHHHHHHHHHHhCCcCCCCC
Confidence 445556778888899999999999999999988 6 89999999999999887765
No 90
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=24.15 E-value=1.1e+02 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 271 LETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 271 L~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
..-|...++.|.|.|.+ +|+|+-...+-=
T Consensus 14 ~~~i~~lV~~G~y~s~S-eviR~alr~l~~ 42 (89)
T COG3609 14 VEFIDELVESGRYKSRS-EVIRAALRLLLE 42 (89)
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHH
Confidence 35688999999999999 999997766543
No 91
>PRK04239 hypothetical protein; Provisional
Probab=23.71 E-value=1.2e+02 Score=26.02 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=15.5
Q ss_pred HHHHhHhhHHHHHHHHhh
Q 020105 63 LEHLRKVRVDELKRELQR 80 (331)
Q Consensus 63 ~eELRklRVAELrrever 80 (331)
||+||+.|++||.+.-..
T Consensus 3 Le~IR~~rl~eLq~q~~~ 20 (110)
T PRK04239 3 LEEIRRRKLEELQKQAQE 20 (110)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 799999999999976653
No 92
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=22.06 E-value=42 Score=24.80 Aligned_cols=16 Identities=56% Similarity=1.198 Sum_probs=13.3
Q ss_pred HhHHHhHHHHH--------hhhcC
Q 020105 31 QCCKQKYRDLE--------RRFND 46 (331)
Q Consensus 31 ~~Cr~Ky~dL~--------rRfs~ 46 (331)
++|+.||.+|. |+|..
T Consensus 9 E~Cr~kfd~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 9 ENCREKYDDLETHLLSEKHRRFAE 32 (49)
T ss_pred ccHhHHHhhHHHHhccHHHHHHHc
Confidence 79999999985 67875
No 93
>smart00338 BRLZ basic region leucin zipper.
Probab=21.80 E-value=1.8e+02 Score=21.66 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=23.2
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 020105 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (331)
Q Consensus 67 RklRVAELrrever~d~sIgsLq~kvk~L~eer 99 (331)
++..+.+|-.+|+....-+-.|+.+|..|+.+-
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777663
No 94
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=20.49 E-value=1.3e+02 Score=24.31 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=21.2
Q ss_pred HHHHhHhhHHHHHHHHhhhhhhhHHHHHHHH
Q 020105 63 LEHLRKVRVDELKRELQRCDLSILSLQLQVK 93 (331)
Q Consensus 63 ~eELRklRVAELrrever~d~sIgsLq~kvk 93 (331)
+=+|| =|-.+-.|+++|-.||--||..|-
T Consensus 22 ~m~l~--svgd~e~eLerCK~sirrLeqevn 50 (79)
T PF09036_consen 22 VMELR--SVGDIEQELERCKASIRRLEQEVN 50 (79)
T ss_dssp ----S--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HhccHHHHHHHHHHHHHHHHHHHH
Confidence 33566 466788999999999999998774
No 95
>PF14502 HTH_41: Helix-turn-helix domain
Probab=20.31 E-value=85 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.4
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 020105 69 VRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (331)
Q Consensus 69 lRVAELrrever~d~sIgsLq~kvk~L~eer 99 (331)
.+|.||- +++++|.|+.|.-++-|++..
T Consensus 7 ~tI~e~~---~~~~vs~GtiQ~Alk~Le~~g 34 (48)
T PF14502_consen 7 PTISEYS---EKFGVSRGTIQNALKFLEENG 34 (48)
T ss_pred CCHHHHH---HHhCcchhHHHHHHHHHHHCC
Confidence 3456664 568899999999999999864
Done!