Query 020105
Match_columns 331
No_of_seqs 177 out of 633
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 7.8E-30 2.7E-34 211.6 13.8 103 225-330 12-114 (117)
2 3nxb_A CAT eye syndrome critic 100.0 1.6E-29 5.6E-34 209.4 11.9 102 225-329 15-116 (116)
3 3d7c_A General control of amin 100.0 4E-29 1.4E-33 206.1 11.9 99 227-328 8-106 (112)
4 1e6i_A Transcriptional activat 100.0 7.9E-29 2.7E-33 207.5 12.9 100 226-328 13-112 (121)
5 2dat_A Possible global transcr 100.0 9.3E-29 3.2E-33 207.4 12.8 105 224-329 11-119 (123)
6 2d9e_A Peregrin; four-helix bu 100.0 1E-28 3.5E-33 207.0 12.6 100 226-328 7-106 (121)
7 2i7k_A Bromodomain-containing 100.0 1.3E-28 4.6E-33 205.6 11.2 101 227-330 9-109 (117)
8 3mb4_A Protein polybromo-1; PB 100.0 2.2E-28 7.4E-33 205.2 12.2 104 225-329 14-121 (124)
9 3mb3_A PH-interacting protein; 100.0 2.7E-28 9.3E-33 207.1 12.4 103 225-330 20-123 (135)
10 3iu5_A Protein polybromo-1; PB 100.0 4.6E-28 1.6E-32 200.9 12.2 103 226-329 5-111 (116)
11 3p1f_A CREB-binding protein; s 100.0 5.1E-28 1.7E-32 201.3 12.0 103 225-330 10-115 (119)
12 3hme_A Bromodomain-containing 100.0 4.6E-28 1.6E-32 203.4 11.7 102 225-329 12-113 (123)
13 2grc_A Probable global transcr 100.0 5.2E-28 1.8E-32 204.6 11.9 104 224-328 9-117 (129)
14 2ouo_A HUNK1 protein, bromodom 99.9 2.4E-28 8.3E-33 207.1 9.8 102 226-328 22-126 (130)
15 2oss_A HUNK1 protein, bromodom 99.9 5.4E-28 1.8E-32 204.2 11.7 95 231-328 26-122 (127)
16 3q2e_A Bromodomain and WD repe 99.9 7.7E-28 2.6E-32 201.6 12.0 101 226-329 10-111 (123)
17 3rcw_A Bromodomain-containing 99.9 1.1E-27 3.8E-32 203.4 12.4 100 226-328 13-112 (135)
18 3jvl_A Bromodomain-containing 99.9 4.6E-28 1.6E-32 201.8 9.6 103 225-328 8-113 (120)
19 4alg_A Bromodomain-containing 99.9 8.9E-28 3E-32 209.2 11.8 95 231-328 37-133 (154)
20 3mqm_A Probable histone-lysine 99.9 9.9E-28 3.4E-32 201.5 11.4 102 227-329 10-115 (126)
21 3fkm_X Signaling protein; brom 99.9 6.4E-28 2.2E-32 212.4 10.5 101 225-328 20-122 (166)
22 3k2j_A Protein polybromo-1; PB 99.9 1.5E-27 5E-32 202.6 11.4 103 226-329 17-123 (130)
23 3ljw_A Protein polybromo-1; al 99.9 2.2E-27 7.4E-32 198.1 12.1 103 225-328 7-113 (120)
24 2yyn_A Transcription intermedi 99.9 2.1E-27 7.3E-32 202.4 11.8 103 224-330 18-122 (135)
25 2ri7_A Nucleosome-remodeling f 99.9 2E-27 6.9E-32 208.1 10.8 101 225-328 71-171 (174)
26 3uv4_A Second bromodomain of h 99.9 5.3E-27 1.8E-31 205.4 12.1 99 227-328 26-129 (158)
27 3dai_A ATPase family AAA domai 99.9 1.5E-26 5.1E-31 195.7 11.7 98 229-329 13-114 (130)
28 3tlp_A Protein polybromo-1; PB 99.9 1E-26 3.5E-31 200.7 10.1 103 226-329 24-131 (150)
29 3o36_A Transcription intermedi 99.9 1.1E-25 3.7E-30 199.5 12.0 103 224-330 79-183 (184)
30 3uv5_A Transcription initiatio 99.9 3.3E-25 1.1E-29 207.0 11.5 100 226-328 14-113 (265)
31 2dkw_A Hypothetical protein KI 99.9 2.8E-25 9.5E-30 189.1 9.0 95 228-330 14-112 (131)
32 3u5n_A E3 ubiquitin-protein li 99.9 1.4E-24 4.8E-29 195.9 11.1 102 225-330 80-201 (207)
33 3uv5_A Transcription initiatio 99.9 3.4E-24 1.2E-28 200.2 11.9 95 231-328 141-236 (265)
34 3aad_A Transcription initiatio 99.9 2.7E-24 9.3E-29 203.8 8.8 98 228-328 49-146 (292)
35 2ro1_A Transcription intermedi 99.9 2.2E-24 7.5E-29 193.3 7.3 97 226-330 76-177 (189)
36 3aad_A Transcription initiatio 99.9 1.2E-23 4.1E-28 199.4 10.3 89 237-328 181-269 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.5E-23 5E-28 200.9 10.3 87 240-329 177-263 (311)
38 2r10_A Chromatin structure-rem 99.9 2.5E-23 8.5E-28 202.5 10.4 86 241-329 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 6.5E-22 2.2E-26 192.6 7.3 96 230-328 82-178 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.2E-21 4.1E-26 187.7 7.9 95 231-328 33-128 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 1.2E-18 4.2E-23 151.5 11.3 99 225-328 6-108 (147)
42 3lqh_A Histone-lysine N-methyl 99.6 5.2E-16 1.8E-20 139.1 7.9 86 231-330 80-165 (183)
43 2elk_A SPCC24B10.08C protein; 95.4 0.0084 2.9E-07 43.5 2.8 30 3-40 25-55 (58)
44 1w0t_A Telomeric repeat bindin 95.1 0.01 3.5E-07 42.1 2.4 32 3-42 18-51 (53)
45 1x41_A Transcriptional adaptor 94.7 0.024 8.2E-07 41.2 3.4 30 3-40 24-53 (60)
46 3sjm_A Telomeric repeat-bindin 94.4 0.017 5.9E-07 43.0 2.2 32 3-42 27-60 (64)
47 1guu_A C-MYB, MYB proto-oncoge 93.7 0.028 9.6E-07 39.4 2.1 30 3-40 19-48 (52)
48 1ity_A TRF1; helix-turn-helix, 92.7 0.06 2E-06 40.0 2.6 34 3-44 26-61 (69)
49 2d9a_A B-MYB, MYB-related prot 92.6 0.059 2E-06 38.9 2.4 30 3-40 24-53 (60)
50 2yus_A SWI/SNF-related matrix- 92.6 0.047 1.6E-06 42.3 1.9 28 4-40 35-62 (79)
51 2dim_A Cell division cycle 5-l 92.5 0.07 2.4E-06 39.7 2.7 30 3-40 25-54 (70)
52 2ebi_A DNA binding protein GT- 91.8 0.12 3.9E-06 39.9 3.3 36 8-47 34-69 (86)
53 1gvd_A MYB proto-oncogene prot 91.8 0.052 1.8E-06 38.1 1.2 29 3-39 19-47 (52)
54 2llk_A Cyclin-D-binding MYB-li 91.2 0.093 3.2E-06 40.2 2.1 33 4-46 40-72 (73)
55 2cu7_A KIAA1915 protein; nucle 88.9 0.33 1.1E-05 36.3 3.5 34 4-46 26-59 (72)
56 2ckx_A NGTRF1, telomere bindin 88.5 0.24 8E-06 38.8 2.5 39 3-45 16-54 (83)
57 2k9n_A MYB24; R2R3 domain, DNA 88.1 0.27 9.2E-06 39.3 2.7 29 3-39 17-45 (107)
58 2din_A Cell division cycle 5-l 88.1 0.4 1.4E-05 35.1 3.5 32 4-45 26-57 (66)
59 2yum_A ZZZ3 protein, zinc fing 88.0 0.27 9.3E-06 36.8 2.5 33 4-44 25-63 (75)
60 1wgx_A KIAA1903 protein; MYB D 87.6 0.26 9E-06 37.9 2.3 35 5-47 29-63 (73)
61 2k9n_A MYB24; R2R3 domain, DNA 87.4 0.42 1.5E-05 38.1 3.5 33 4-45 70-102 (107)
62 2ltp_A Nuclear receptor corepr 85.8 0.16 5.4E-06 39.9 0.0 35 3-46 32-66 (89)
63 3zqc_A MYB3; transcription-DNA 84.7 0.26 8.8E-06 40.8 0.9 29 3-39 18-46 (131)
64 1gv2_A C-MYB, MYB proto-oncoge 84.3 0.31 1.1E-05 38.5 1.2 30 3-40 20-49 (105)
65 2roh_A RTBP1, telomere binding 84.0 0.59 2E-05 39.2 2.8 40 3-46 47-86 (122)
66 1h89_C C-MYB, MYB proto-oncoge 83.5 0.29 9.8E-06 41.6 0.7 30 2-39 21-50 (159)
67 2cqr_A RSGI RUH-043, DNAJ homo 83.2 0.26 9E-06 37.6 0.3 31 7-45 41-71 (73)
68 3osg_A MYB21; transcription-DN 82.0 0.56 1.9E-05 38.5 1.9 35 4-47 79-113 (126)
69 3osg_A MYB21; transcription-DN 81.5 0.58 2E-05 38.4 1.8 29 3-40 27-55 (126)
70 1h8a_C AMV V-MYB, MYB transfor 80.2 0.88 3E-05 37.2 2.5 29 3-39 43-71 (128)
71 1gv2_A C-MYB, MYB proto-oncoge 79.1 0.61 2.1E-05 36.8 1.1 31 4-43 73-103 (105)
72 2juh_A Telomere binding protei 78.0 0.96 3.3E-05 37.8 2.1 39 3-45 33-71 (121)
73 2cqq_A RSGI RUH-037, DNAJ homo 77.5 1.7 5.9E-05 32.9 3.2 28 8-44 32-59 (72)
74 2aje_A Telomere repeat-binding 77.3 0.69 2.4E-05 37.8 1.0 41 3-47 29-69 (105)
75 2cjj_A Radialis; plant develop 75.9 1.7 5.9E-05 34.6 2.9 30 7-44 31-60 (93)
76 1h89_C C-MYB, MYB proto-oncoge 67.4 2.1 7.2E-05 36.2 1.7 30 3-40 74-103 (159)
77 1zrj_A E1B-55KDA-associated pr 62.8 4.7 0.00016 28.7 2.5 33 66-98 10-43 (50)
78 2eqr_A N-COR1, N-COR, nuclear 60.0 5.2 0.00018 28.9 2.4 30 4-42 29-58 (61)
79 2do1_A Nuclear protein HCC-1; 59.6 4.7 0.00016 29.3 2.1 33 66-98 10-43 (55)
80 2iw5_B Protein corest, REST co 56.0 6.2 0.00021 36.5 2.8 33 4-45 150-182 (235)
81 3zqc_A MYB3; transcription-DNA 55.6 4.1 0.00014 33.4 1.4 35 4-47 71-106 (131)
82 2kvu_A MKL/myocardin-like prot 49.0 8.4 0.00029 29.8 2.1 35 65-99 25-60 (75)
83 3kxe_C Antitoxin protein PARD- 47.6 14 0.00049 28.9 3.3 30 271-301 15-44 (88)
84 1zxa_A CGMP-dependent protein 46.7 21 0.00071 27.0 3.9 33 65-97 21-53 (67)
85 3swk_A Vimentin; cytoskeleton, 43.5 41 0.0014 26.0 5.3 27 72-98 52-78 (86)
86 1h1j_S THO1 protein; SAP domai 42.0 16 0.00055 26.0 2.5 34 65-98 4-38 (51)
87 3ol1_A Vimentin; structural ge 41.7 60 0.0021 26.4 6.3 30 71-100 71-100 (119)
88 3htk_A Structural maintenance 39.0 25 0.00086 24.8 3.2 28 68-95 32-59 (60)
89 1yyb_A Programmed cell death p 37.0 21 0.00071 22.2 2.1 17 61-77 5-21 (27)
90 1t2k_D Cyclic-AMP-dependent tr 34.2 52 0.0018 23.5 4.3 33 67-99 20-52 (61)
91 3nmd_A CGMP dependent protein 29.5 61 0.0021 24.7 4.1 34 63-96 32-67 (72)
92 1jnm_A Proto-oncogene C-JUN; B 29.2 70 0.0024 22.9 4.3 34 67-100 20-53 (62)
93 2l5g_A GPS2 protein, G protein 25.6 36 0.0012 23.0 1.9 20 82-101 14-33 (38)
94 1gmj_A ATPase inhibitor; coile 25.3 94 0.0032 24.4 4.6 35 64-98 40-80 (84)
95 2xag_B REST corepressor 1; ami 24.3 30 0.001 35.0 2.0 33 4-45 397-429 (482)
96 2jxn_A Uncharacterized protein 23.4 26 0.00089 29.4 1.1 15 61-75 3-17 (127)
97 2l5g_B Putative uncharacterize 23.2 1.2E+02 0.004 21.0 4.1 31 71-101 11-41 (42)
98 3s9g_A Protein hexim1; cyclin 23.1 1.9E+02 0.0064 23.4 6.0 52 29-100 31-82 (104)
99 1ci6_A Transcription factor AT 22.5 1.1E+02 0.0038 22.1 4.3 38 62-99 16-53 (63)
100 2rnn_A E3 SUMO-protein ligase 21.1 65 0.0022 26.6 3.0 35 62-96 33-68 (114)
101 2hvu_A PDCD5-like protein; YMR 21.0 16 0.00056 30.3 -0.6 17 61-77 3-19 (116)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.96 E-value=7.8e-30 Score=211.64 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=98.7
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
....+.|..||+.|..|+. +|+|.+||++..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 12 ~~~~~~c~~il~~l~~~~~--s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHED--AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLE-TFALDVRLVFDNCETF 88 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTT--CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--chhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4556779999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
|+++|.+|.+|..|+++|.+.|.+.+
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 2
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.96 E-value=1.6e-29 Score=209.41 Aligned_cols=102 Identities=15% Similarity=0.337 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
....+.|..||+.|+.|+. +|+|..||++..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 15 ~~~~~~~~~il~~l~~~~~--s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKD--SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE-EFVNDMKTMFRNCRKY 91 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTT--CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--cHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 3456789999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
|+++|.+|.+|..|+++|.+.|+|.
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~kh 116 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMMKH 116 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999863
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.96 E-value=4e-29 Score=206.13 Aligned_cols=99 Identities=26% Similarity=0.338 Sum_probs=95.4
Q ss_pred chhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCC
Q 020105 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306 (331)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 306 (331)
-...|..||+.|++|+. +|+|.+||++.++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||+
T Consensus 8 l~~~~~~il~~l~~~~~--~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 8 LYTTLKNLLAQIKSHPS--AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRK-LFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHSGG--GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCC--chhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHH-HHHHHHHHHHHHHHHHCC
Confidence 34668999999999999 999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 020105 307 KASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 307 ~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
++|.+|.+|..|+++|.+.|++
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~ 106 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKE 106 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 4
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.96 E-value=7.9e-29 Score=207.50 Aligned_cols=100 Identities=21% Similarity=0.398 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
.....|..||+.|++|+. +|+|.+||+..++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||
T Consensus 13 ~~~~~~~~il~~l~~~~~--a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN 89 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAA--AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKME-DFIYDARLVFNNCRMYN 89 (121)
T ss_dssp TTHHHHHHHHHHHHHSTT--CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCC--chhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 446779999999999999 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020105 306 PKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 306 ~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+++|.+|.+|..|+++|.+.|++
T Consensus 90 ~~~s~i~~~A~~L~~~f~~~~~~ 112 (121)
T 1e6i_A 90 GENTSYYKYANRLEKFFNNKVKE 112 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=207.41 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=98.0
Q ss_pred CccchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHH
Q 020105 224 TYAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFN 299 (331)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~ 299 (331)
+....+.|..||+.|++|++ .++|+|.+||+..++||||+||++||||+||++||++|.|.++. +|..||.|||+
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~ 89 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLG-DLEKDVMLLCH 89 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHH
Confidence 34556779999999999974 26999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 300 NAIVYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 300 NA~~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
||+.||+++|.+|.+|..|+++|.+.+++-
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998763
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=207.02 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=95.0
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
.-...|..||+.|++|+. +|+|.+||++.++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||
T Consensus 7 pl~~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDT--GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFD-DFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHCS--SCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCc--cHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 345679999999999999 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020105 306 PKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 306 ~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+++|.+|.+|..|+++|.+.|++
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~ 106 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQ 106 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887754
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=205.59 Aligned_cols=101 Identities=15% Similarity=0.309 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCC
Q 020105 227 ESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFP 306 (331)
Q Consensus 227 ~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~ 306 (331)
-...|..||+.|++++. +++|..||++..+||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+
T Consensus 9 l~~~l~~il~~L~~~~~--~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 9 LQEALNQLMRQLQRKDP--SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE-ELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHTSSG--GGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHH-HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCcc--cHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCC
Confidence 34668999999999999 999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 307 KASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 307 ~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
++|.+|.+|..|++.|.+.+...+
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643
No 8
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.95 E-value=2.2e-28 Score=205.24 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=96.5
Q ss_pred ccchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
.+..+.|..||+.|+++++ .++++|.+||+..++||||+||++||||+||++||++|.|.++. +|..||.|||+|
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~N 92 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID-SMVEDFVMMFNN 92 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHH
Confidence 4567789999999999543 24899999999999999999999999999999999999999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
|+.||+++|.+|.+|..|+++|.+.+++-
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 9
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=207.13 Aligned_cols=103 Identities=21% Similarity=0.370 Sum_probs=97.5
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
..-.+.|..||+.|..|+. +|+|.+||++.++||||++|++||||+||+.||++|.|.++. +|..||.|||.||+.|
T Consensus 20 ~~l~~~~~~il~~l~~~~~--s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCED--SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPM-ELCKDVRLIFSNSKAY 96 (135)
T ss_dssp STHHHHHHHHHHHHHHSGG--GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4455679999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHhhc
Q 020105 305 FPK-ASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 305 N~~-~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
|++ +|.+|.+|..|+++|.+.|.+.+
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 997 99999999999999999987643
No 10
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=200.92 Aligned_cols=103 Identities=30% Similarity=0.355 Sum_probs=96.8
Q ss_pred cchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 226 AESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
...+.|..||+.|+++++ .++|+|.+||+...+||||++|++||||+||++||++|.|.++. +|..||.|||+||
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na 83 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVN-LLTADFQLLFNNA 83 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 445679999999999864 36999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
+.||+++|.+|.+|..|+++|.+.+++-
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=5.1e-28 Score=201.26 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=96.1
Q ss_pred ccchhHHHHHHHHHHh-cCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRT-HNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~-hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
....+.|..+|+.|.. |+. +|+|.+||++. ++||||++|++||||+||++||++|.|.++. +|..||.|||+||
T Consensus 10 ~el~~~l~~~l~~l~~~~~~--s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 86 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPE--SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW-QYVDDVWLMFNNA 86 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTT--TGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--CchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHH
Confidence 4455779999999877 778 99999999987 8999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.||+++|.+|.+|..|+++|.+.|.+.+
T Consensus 87 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 87 WLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987653
No 12
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=203.38 Aligned_cols=102 Identities=14% Similarity=0.268 Sum_probs=97.3
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
.+..+.|..||+.|..|+. +++|..||++..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.|
T Consensus 12 ~p~~~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDP--HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT-EFKADFKLMCDNAMTY 88 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCT--TCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCc--cHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4556789999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
|+++|.+|.+|..|.+.|.+.|++.
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 13
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.95 E-value=5.2e-28 Score=204.59 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=97.2
Q ss_pred CccchhHHHHHHHHHHhcCC-----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHH
Q 020105 224 TYAESEPLIRLLDLIRTHNH-----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLF 298 (331)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~-----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf 298 (331)
+..-.+.|..||+.|++|++ .++|+|.+||+...+||||+||++||||+||++||++|.|.++. +|..||.|||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~Dv~Li~ 87 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN-DLEKDVMLLC 87 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHH
Confidence 45556789999999999863 36999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 299 NNAIVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 299 ~NA~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+||+.||+++|.+|.+|..|+++|.+.+++
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 117 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQK 117 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 14
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=2.4e-28 Score=207.06 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=94.9
Q ss_pred cchhHHHHHHHHHHhcCCC-CCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 226 AESEPLIRLLDLIRTHNHH-LPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~-~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
...+.|..||+.|..|++. ++|+|.+|||+. ++||||+||++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ-EFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHH
Confidence 4456799999999998742 589999999986 5999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
.||+++|.+|.+|..|+++|.+.|.+
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 126 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAK 126 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 15
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=5.4e-28 Score=204.17 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
|..||+.|++|+. +|+|.+||++. ++||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++
T Consensus 26 ~~~il~~L~~~~~--a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~Na~~yN~~~ 102 (127)
T 2oss_A 26 LRVVLKTLWKHQF--AWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ-ECIQDFNTMFTNCYIYNKPG 102 (127)
T ss_dssp HHTHHHHHHTSTT--CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCcc--chhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 5568999999999 99999999975 8999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 020105 309 SLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 309 S~~~~~A~~Lr~l~~k~m~k 328 (331)
|.+|.+|..|+++|.+.|++
T Consensus 103 s~i~~~A~~L~~~f~~~~~~ 122 (127)
T 2oss_A 103 DDIVLMAEALEKLFLQKINE 122 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 16
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=201.64 Aligned_cols=101 Identities=22% Similarity=0.419 Sum_probs=95.8
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
.-.+.|..||+.|..|+. +|+|.+||++..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.||
T Consensus 10 ~~~~~c~~il~~l~~~~~--s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCED--SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPL-EFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp CHHHHHHHHHHHHHTSGG--GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCC--cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 334569999999999999 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhh
Q 020105 306 PK-ASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 306 ~~-~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
++ +|.+|.+|..|+++|.+.|++.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~ 111 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKI 111 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999998764
No 17
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=203.36 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=95.5
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
.-...|..||+.|+.|+. +|+|..||++.++||||++|++||||+||++||++|.|.++. +|..||.|||+||+.||
T Consensus 13 ~l~~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDP--ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH-EFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCc--chhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHC
Confidence 345679999999999999 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020105 306 PKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 306 ~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+++|.+|++|..|+++|.+.+++
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~ 112 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQ 112 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 18
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=4.6e-28 Score=201.78 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=96.0
Q ss_pred ccchhHHHHHHHHHHhcCC-CCCccccccCCccc--chhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRTHNH-HLPSLFERRLKSQE--SNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~-~~a~~F~~PVd~~e--~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
....+.|..||..|..|+. .++|+|.+||++.. +||||++|++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na 86 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ-EFGADVRLMFSNC 86 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHHH
Confidence 4556779999999998876 25899999999986 999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+.||+++|.+|.+|..|+++|.+.|.+
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAK 113 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 19
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=8.9e-28 Score=209.19 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
|..||+.|++|+. +|+|.+||++. ++||||+||++||||+||++||++|.|.++. +|..||.|||.||+.||+++
T Consensus 37 ~~~il~~l~~~~~--a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na~~YN~~~ 113 (154)
T 4alg_A 37 HKVVMKALWKHQF--AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAAS-ECMQDFNTMFTNCYIYNKPT 113 (154)
T ss_dssp HHTHHHHHHTSTT--CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCcC--chhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 5667899999998 99999999987 7999999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 020105 309 SLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 309 S~~~~~A~~Lr~l~~k~m~k 328 (331)
|.+|.+|..|+++|.+.|.+
T Consensus 114 s~i~~~A~~L~~~f~~~~~~ 133 (154)
T 4alg_A 114 DDIVLMAQTLEKIFLQKVAS 133 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 20
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.95 E-value=9.9e-28 Score=201.52 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 227 ESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 227 ~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
..+.|..||+.|++|++ .++|+|.+||+...+||||++|++||||+||++||++|.|.++. +|..||.|||+||+
T Consensus 10 l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~ 88 (126)
T 3mqm_A 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVE-AFDADMLKVFRNAE 88 (126)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHH
Confidence 34568999999999865 46999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
.||+++|.+|.+|..|+++|.+.+++-
T Consensus 89 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 115 (126)
T 3mqm_A 89 KYYGRKSPVGRDVCRLRKAYYNARHEA 115 (126)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888753
No 21
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.95 E-value=6.4e-28 Score=212.41 Aligned_cols=101 Identities=16% Similarity=0.328 Sum_probs=93.1
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcc--cchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQ--ESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAI 302 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~--e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~ 302 (331)
..-.+.|..||+.|+.|+. +|+|..||++. ++||||+||++||||+||++||++|.|.++. +|..||.|||.||+
T Consensus 20 ~~~~~~~~~il~~L~~~~~--s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEG--GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPS-EFVKDVQLIFDNCS 96 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTT--GGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--ChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHH
Confidence 3444668999999999999 99999999975 7999999999999999999999999999999 99999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 303 VYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 303 ~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
.||+++|.+|.+|..|+++|.+.|.+
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~ 122 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIV 122 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=202.59 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=95.6
Q ss_pred cchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 226 AESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
.....|..|++.|.++.+ .++|+|.+||+...+||||++|++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 17 kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~-ef~~Dv~Lif~Na 95 (130)
T 3k2j_A 17 NLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLD-HLECDLNLMFENA 95 (130)
T ss_dssp HHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHH
Confidence 345668899999998765 36999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
+.||+++|.+|++|..|+++|.+.|++-
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 96 KRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.95 E-value=2.2e-27 Score=198.13 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=96.2
Q ss_pred ccchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
..-...|..||+.|.++++ .++++|.+||+..++||||+||++||||+||++||++|.|.++. +|..||.|||.|
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~N 85 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIH-AMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHH-HHHHHHHHHHHH
Confidence 3445668999999998866 37999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
|+.||+++|.+|.+|..|+++|.+.+++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 24
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=202.41 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=96.4
Q ss_pred CccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhc--CCccCcHHHHHHHHHHHHHHH
Q 020105 224 TYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVER--GSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~--g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
.....+.|..||..|+.|+. +|+|.+||+. ++||||+||++||||+||++||++ |.|.++. +|..||.|||+||
T Consensus 18 ~p~~~~~c~~il~~L~~~~~--s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~-ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEM--SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNC 93 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGG--GGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcc--chhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHH-HHHHHHHHHHHHH
Confidence 34456779999999999999 9999999997 799999999999999999999998 5999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.||+++|.+|.+|..|+++|.+.|++.+
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997643
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=2e-27 Score=208.10 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=96.9
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhh
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVY 304 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~Y 304 (331)
....+.|..||+.|+.|+. +|+|.+||++..+|+||++|++||||+||++||++|.|.++. +|.+||.|||+||+.|
T Consensus 71 ~~~~~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKM--AWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLT-EFVADMTKIFDNCRYY 147 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGG--GTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh--hhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 4456779999999999999 999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 305 FPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 305 N~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
|+++|.+|.+|..|+++|.++|++
T Consensus 148 N~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 148 NPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.94 E-value=5.3e-27 Score=205.36 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=90.3
Q ss_pred chhHHHHHHHHH-----HhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 227 ESEPLIRLLDLI-----RTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 227 ~~q~L~~iL~~L-----~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
..-.|..||+.| +.|+. +|||..||++..+||||+||++||||+||++||++|.|.++. +|..||.|||.||
T Consensus 26 ~~~~l~~iL~~i~~~kl~~~~~--s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~Na 102 (158)
T 3uv4_A 26 DQVAFSFILDNIVTQKMMAVPD--SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANS 102 (158)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTT--CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCC--chhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 344466666664 45777 999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+.||+++|.+|++|..|..+|.+.|++
T Consensus 103 ~~yN~~~s~i~~~A~~L~~~~~~~l~e 129 (158)
T 3uv4_A 103 VKYNGPESQYTKTAQEIVNVCYQTLTE 129 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 27
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.94 E-value=1.5e-26 Score=195.68 Aligned_cols=98 Identities=20% Similarity=0.344 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 229 EPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 229 q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
..|..+|+.|..|+. +|+|..||++..+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.||+++
T Consensus 13 ~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 13 IFLRNVTHRLAIDKR--FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK-DYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHTSGG--GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHcCCc--cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHCCCC
Confidence 458899999999999 999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CHH----HHHHHHHHHHHHHHHHhh
Q 020105 309 SLE----SEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 309 S~~----~~~A~~Lr~l~~k~m~k~ 329 (331)
|++ +..|..|++.+...+++.
T Consensus 90 s~~~~~i~~~A~~L~~~~~~~i~~e 114 (130)
T 3dai_A 90 DPGDRLIRHRACALRDTAYAIIKEE 114 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 678888888888777644
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=200.66 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=95.3
Q ss_pred cchhHHHHHHHHHHhcCC-----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 226 AESEPLIRLLDLIRTHNH-----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~-----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
...+.|..||+.|.++.. .++++|..||+..++||||+||++||||+||++||++|.|.++. +|..||.|||.|
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-ef~~D~~li~~N 102 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEE-GMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHH
Confidence 446778888888887654 36999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKRT 329 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k~ 329 (331)
|+.||+++|.+|.+|..|+++|.+.+++-
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 131 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKEL 131 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998763
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.93 E-value=1.1e-25 Score=199.48 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=96.4
Q ss_pred CccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhc--CCccCcHHHHHHHHHHHHHHH
Q 020105 224 TYAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVER--GSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 224 ~~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~--g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
.......|..||..|+.|+. +++|..||+. ++|+||+||++||||+||++||++ |.|.++. +|.+||.|||.||
T Consensus 79 ~~~~~~~c~~il~~l~~~~~--s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~-ef~~Dv~li~~Na 154 (184)
T 3o36_A 79 TPIDKRKCERLLLFLYCHEM--SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE-DFVADFRLIFQNC 154 (184)
T ss_dssp CHHHHHHHHHHHHHHHHSTT--CHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchh--hhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHH
Confidence 34556679999999999999 9999999995 599999999999999999999998 7999999 9999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 302 IVYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 302 ~~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.||+++|.+|.+|..|+++|.+.|++.+
T Consensus 155 ~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 155 AEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=3.3e-25 Score=206.98 Aligned_cols=100 Identities=17% Similarity=0.310 Sum_probs=95.8
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhC
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYF 305 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN 305 (331)
.-...|..||+.|+.|+. +|+|..||++..+||||++|++||||+||+.||++|.|.++. +|..||.|||+||+.||
T Consensus 14 ~l~~~l~~il~~l~~~~~--~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~-~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPN--TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHTSTT--CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--chhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhhhhcC
Confidence 445679999999999999 999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 020105 306 PKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 306 ~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+++|.+|.+|..|..+|.+.|++
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~ 113 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKE 113 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988865
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=189.08 Aligned_cols=95 Identities=21% Similarity=0.359 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
...|..||+.|+.|+. +|+|..| +||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||++
T Consensus 14 ~~~~~~il~~l~~~~~--~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~ 85 (131)
T 2dkw_A 14 RLFLRDVTKRLATDKR--FNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAK-DFLKDIDLICSNALEYNPD 85 (131)
T ss_dssp HHHHHHHHHHHHHSGG--GCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSH-HHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhCcc--chhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHCCC
Confidence 4558899999999999 9999999 899999999999999999999999999999 9999999999999999999
Q ss_pred CCH----HHHHHHHHHHHHHHHHHhhc
Q 020105 308 ASL----ESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 308 ~S~----~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+|+ ++..|..|++.+...|...|
T Consensus 86 ~s~~~~~i~~~A~~L~~~~~~~l~~~l 112 (131)
T 2dkw_A 86 KDPGDKIIRHRACTLKDTAHAIIAAEL 112 (131)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 46789999999888776554
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=1.4e-24 Score=195.94 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=95.8
Q ss_pred ccchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhc---CCccCcHHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVER---GSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~---g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
......|..||..|..|+. +|+|.+||+. ++|+||+||++||||+||++||++ |.|.++. +|.+||.|||.||
T Consensus 80 ~~~~~~c~~il~~l~~~~~--s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~-~f~~Dv~li~~Na 155 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHEL--SIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD-DFVADVRLIFKNC 155 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTT--CGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc--hhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHH-HHHHHHHHHHHHH
Confidence 4455679999999999999 9999999987 899999999999999999999997 7999999 9999999999999
Q ss_pred hhhCC-----------------CCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 302 IVYFP-----------------KASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 302 ~~YN~-----------------~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.||+ +++.++.+|..|+.+|.++|++.+
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 999999999999999999998754
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.91 E-value=3.4e-24 Score=200.16 Aligned_cols=95 Identities=18% Similarity=0.315 Sum_probs=87.7
Q ss_pred HHHHHH-HHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCC
Q 020105 231 LIRLLD-LIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKAS 309 (331)
Q Consensus 231 L~~iL~-~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S 309 (331)
|..++. .|..|+. +|+|..||+...+||||++|++||||+||++||++|.|.++. +|..||.|||.||+.||+++|
T Consensus 141 l~~i~~~~l~~~~~--~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~-~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 141 LDNIVTQKMMAVPD--SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp HHHHHHHTTTTSTT--CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhhhh--hHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCC
Confidence 334443 3777888 999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020105 310 LESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 310 ~~~~~A~~Lr~l~~k~m~k 328 (331)
.+|.+|..|..+|.+.|++
T Consensus 218 ~~~~~A~~l~~~~~~~~~~ 236 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTE 236 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=203.84 Aligned_cols=98 Identities=17% Similarity=0.324 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCC
Q 020105 228 SEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPK 307 (331)
Q Consensus 228 ~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~ 307 (331)
+..|..||+.|+.|+. +|+|.+||++..+||||+||++||||+||++||++|.|.+.. +|..||.|||+||+.||++
T Consensus 49 ~~~~~~il~~l~~~~~--a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~-~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 49 SSILESIINDMRDLPN--TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSRE-EFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHSSSTT--CGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCCc--chhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHH-HHHHHHHHHHHHHHHHcCC
Confidence 4668999999999999 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh
Q 020105 308 ASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 308 ~S~~~~~A~~Lr~l~~k~m~k 328 (331)
+|.+|.+|..|..+|.+.+++
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGG
T ss_pred chHHHHHHHHHHHHHHhhhhc
Confidence 999999999999998877654
No 35
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=193.26 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=90.0
Q ss_pred cchhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhc--cCCCHHHHHHHHhcC---CccCcHHHHHHHHHHHHHH
Q 020105 226 AESEPLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVR--QHVDLETIQTRVERG---SYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 226 ~~~q~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk--~PMDL~TIk~KL~~g---~Y~S~~~EF~rDl~Lmf~N 300 (331)
.....|..||+.|..|+. +|||.+||+ |+||+||+ +||||+||++||++| .|.++. +|..||.|||+|
T Consensus 76 ~~~~~c~~iL~~l~~~~~--s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~-eF~~Dv~Lif~N 148 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHEP--CRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQ-EFAQDVGRMFKQ 148 (189)
T ss_dssp HHHHHHHHHHHHHHHSTT--HHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCcc--chhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHH-HHHHHHHHHHHH
Confidence 344568999999999999 999999998 78999998 899999999999999 999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k~~ 330 (331)
|+.|| +++.++.+|..|+++|.++|++.+
T Consensus 149 ~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 149 FNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999 588889999999999999998754
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=199.40 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=84.9
Q ss_pred HHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 020105 237 LIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAH 316 (331)
Q Consensus 237 ~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~ 316 (331)
.|+.|+. +|+|..||+...+||||+||++||||+||++||++|.|.++. +|..||.|||.||+.||+++|.+|.+|.
T Consensus 181 ~l~~~~~--s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~-~f~~D~~Li~~Na~~yN~~~s~i~~~A~ 257 (292)
T 3aad_A 181 KMMAVPD--SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRE-SFLDDVNLILANSVKYNGPESQYTKTAQ 257 (292)
T ss_dssp TGGGSTT--CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHH-HHHHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred hhhcCcc--hhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3678888 999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 020105 317 QLRNLVSNEIKR 328 (331)
Q Consensus 317 ~Lr~l~~k~m~k 328 (331)
.|+++|.+.|.+
T Consensus 258 ~L~~~~~~~~~~ 269 (292)
T 3aad_A 258 EIVNVCYQTLTE 269 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.89 E-value=1.5e-23 Score=200.86 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=83.5
Q ss_pred hcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 020105 240 THNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLR 319 (331)
Q Consensus 240 ~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr 319 (331)
.|+. +|+|++||+..++||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++|.+|.+|..|+
T Consensus 177 ~~~~--s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~ 253 (311)
T 2r0y_A 177 KVKL--SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLT 253 (311)
T ss_dssp SSCT--TGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred CCcc--HHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4556 999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 020105 320 NLVSNEIKRT 329 (331)
Q Consensus 320 ~l~~k~m~k~ 329 (331)
++|.+.|++.
T Consensus 254 ~~f~~~~~~~ 263 (311)
T 2r0y_A 254 NYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.89 E-value=2.5e-23 Score=202.55 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=82.8
Q ss_pred cCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 020105 241 HNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASLESEAAHQLRN 320 (331)
Q Consensus 241 hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~~~~~A~~Lr~ 320 (331)
|+. +|+|.+||+..++||||+||++||||+||++||++|.|.++. +|..||.|||+||+.||+++|.+|.+|..|++
T Consensus 228 ~~~--s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~-ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 228 VKL--SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIY-DFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SCT--TGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHH-HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred Ccc--hhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 455 999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 020105 321 LVSNEIKRT 329 (331)
Q Consensus 321 l~~k~m~k~ 329 (331)
+|.+.|++.
T Consensus 305 ~f~~~~~~~ 313 (361)
T 2r10_A 305 YFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998763
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=6.5e-22 Score=192.60 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCcc-CcHHHHHHHHHHHHHHHhhhCCCC
Q 020105 230 PLIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYS-ACILTFYRDLLLLFNNAIVYFPKA 308 (331)
Q Consensus 230 ~L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~-S~~~EF~rDl~Lmf~NA~~YN~~~ 308 (331)
.|..+|+.|.+....++++|.+||+...+||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||.++
T Consensus 82 ~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~-~f~~D~~li~~Na~~yN~~~ 158 (361)
T 2r10_A 82 FISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYD 158 (361)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHH-HHHHHHHHHHHHHHHHBCSS
T ss_pred HHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHH-HHHHHHHHHHHHHhhcCCCC
Confidence 3566777776543335899999999999999999999999999999999 4554 899 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 020105 309 SLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 309 S~~~~~A~~Lr~l~~k~m~k 328 (331)
|.+|.+|..|+++|.++|.+
T Consensus 159 s~i~~~a~~l~~~~~~~~~k 178 (361)
T 2r10_A 159 SLIVKNSMQVVMLIEFEVLK 178 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.84 E-value=1.2e-21 Score=187.66 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCcc-CcHHHHHHHHHHHHHHHhhhCCCCC
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYS-ACILTFYRDLLLLFNNAIVYFPKAS 309 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~-S~~~EF~rDl~Lmf~NA~~YN~~~S 309 (331)
+..+|..+...-..++++|.+||+...+||||+||++||||+||++|| +.|. ++. +|..||.|||+||+.||+++|
T Consensus 33 ~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~-~f~~D~~li~~Na~~yN~~~s 109 (311)
T 2r0y_A 33 ISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPS-NFLLDVELLTKNCQAYNEYDS 109 (311)
T ss_dssp HHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHH-HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHH-HHHHHHHHHHHHHHHccCCCC
Confidence 445666666533235999999999999999999999999999999999 5555 899 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020105 310 LESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 310 ~~~~~A~~Lr~l~~k~m~k 328 (331)
.+|++|..|+++|.++|.+
T Consensus 110 ~i~~~A~~l~~~~~~~~~k 128 (311)
T 2r0y_A 110 LIVKNSMQVVMLIEFEVLK 128 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998765
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=151.49 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=90.5
Q ss_pred ccchhHHHHHHHHHHhcCC----CCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHH
Q 020105 225 YAESEPLIRLLDLIRTHNH----HLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNN 300 (331)
Q Consensus 225 ~~~~q~L~~iL~~L~~hk~----~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~N 300 (331)
..-.+.|..|++.|.+|++ .++.+|.+.++.. |+||. ++||||.+|++||+.|.|.++. +|..||.|||+|
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld-~f~~D~~lmf~N 80 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLD-LFQEHMFEVLER 80 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHH
Confidence 3445668999999999987 3799999998876 89998 9999999999999999999999 999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 020105 301 AIVYFPKASLESEAAHQLRNLVSNEIKR 328 (331)
Q Consensus 301 A~~YN~~~S~~~~~A~~Lr~l~~k~m~k 328 (331)
|..||.++|.+|..|..|+.+|.+...+
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~e 108 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDE 108 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.62 E-value=5.2e-16 Score=139.09 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCCCCccccccCCcccchhHHHhhccCCCHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHhhhCCCCCH
Q 020105 231 LIRLLDLIRTHNHHLPSLFERRLKSQESNEYKELVRQHVDLETIQTRVERGSYSACILTFYRDLLLLFNNAIVYFPKASL 310 (331)
Q Consensus 231 L~~iL~~L~~hk~~~a~~F~~PVd~~e~PdY~~iIk~PMDL~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA~~YN~~~S~ 310 (331)
|..||+.|..|+. +|+|.++. ++.||||.||++||++|.|.++. +|..||.|||.||+.||.+++.
T Consensus 80 l~~vl~~L~~~~~--s~~~~~y~-----------~k~PmDL~~i~kKl~~~~Y~s~~-eF~~Dv~lIf~n~~~~~~~~~e 145 (183)
T 3lqh_A 80 LKQVLTALLNSRT--TSHLLRYR-----------QQQPLDLEGVKRKMDQGNYTSVL-EFSDDIVKIIQAAINSDGGQPE 145 (183)
T ss_dssp HHHHHHHHHTCHH--HHHHHTCC-----------C--CCSHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhccc--cHhhhhhh-----------hcCCccHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHhhccCCChh
Confidence 7889999999998 99998853 49999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 020105 311 ESEAAHQLRNLVSNEIKRTK 330 (331)
Q Consensus 311 ~~~~A~~Lr~l~~k~m~k~~ 330 (331)
+.+++..|+.+|.++|++.+
T Consensus 146 ~~~ag~~l~~~f~~~l~~vf 165 (183)
T 3lqh_A 146 IKKANSMVKSFFIRQMERVF 165 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHHHHC
Confidence 99999999999999999875
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=95.44 E-value=0.0084 Score=43.55 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCCCChhhHHHHHh-hcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQ-TKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq-~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||..+|..||..|. .| |+..|+.||..+
T Consensus 25 ~~~G~~~W~~IA~~~~~~R--------t~~qcr~r~~~~ 55 (58)
T 2elk_A 25 ETLGLGNWADIADYVGNAR--------TKEECRDHYLKT 55 (58)
T ss_dssp HHTTTTCHHHHHHHHCSSC--------CHHHHHHHHHHH
T ss_pred HHHCcCCHHHHHHHHCCCC--------CHHHHHHHHHHH
Confidence 4699999999999998 67 689999999753
No 44
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.14 E-value=0.01 Score=42.08 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=27.3
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHh
Q 020105 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLER 42 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (331)
..||+..|..||..+. .| |+..|+.||+.|.+
T Consensus 18 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 18 RKYGEGNWSKILLHYKFNNR--------TSVMLKDRWRTMKK 51 (53)
T ss_dssp HHHCTTCHHHHHHHSCCSSC--------CHHHHHHHHHHHHT
T ss_pred HHHCcCCHHHHHHHcCCCCC--------CHHHHHHHHHHHHc
Confidence 4689999999999985 33 78999999998865
No 45
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.69 E-value=0.024 Score=41.24 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||...|..||.-|..| |+..|+.||...
T Consensus 24 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~r~~~~ 53 (60)
T 1x41_A 24 MDCGFGNWQDVANQMCTK--------TKEECEKHYMKY 53 (60)
T ss_dssp HHTCTTCHHHHHHHHTTS--------CHHHHHHHHHHH
T ss_pred HHHCcCcHHHHHHHhCCC--------CHHHHHHHHHHH
Confidence 368999999999999776 689999999753
No 46
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=94.43 E-value=0.017 Score=42.96 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHh
Q 020105 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLER 42 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (331)
.+||+.+|..||..+- .| |+..|+.||+-|.+
T Consensus 27 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 27 QKYGEGNWAAISKNYPFVNR--------TAVMIKDRWRTMKR 60 (64)
T ss_dssp HHHCTTCHHHHHHHSCCSSC--------CHHHHHHHHHHHHH
T ss_pred HccCCCchHHHHhhcCCCCC--------CHHHHHHHHHHHhc
Confidence 4699999999998752 33 88999999998875
No 47
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=93.75 E-value=0.028 Score=39.38 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||...|..||..|..| |+..|+.||..+
T Consensus 19 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 48 (52)
T 1guu_A 19 EQNGTDDWKVIANYLPNR--------TDVQCQHRWQKV 48 (52)
T ss_dssp HHHCSSCHHHHHHTSTTC--------CHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHcCCC--------CHHHHHHHHHHH
Confidence 358999999999988655 789999999865
No 48
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=92.72 E-value=0.06 Score=40.04 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.2
Q ss_pred CCCCCCChhhHHHHHh--hcCCCCCCCCChHhHHHhHHHHHhhh
Q 020105 3 NVGGVGASMRLSVELQ--TKTSLPHLLTTPQCCKQKYRDLERRF 44 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq--~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (331)
..||+..|..||..|. .| |+..|+.||+.+-+.-
T Consensus 26 ~~~G~~~W~~Ia~~~~~~~R--------t~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 26 RKYGEGNWSKILLHYKFNNR--------TSVMLKDRWRTMKKLK 61 (69)
T ss_dssp HHHCSSCHHHHHHHSCCSSC--------CHHHHHHHHHHHHHTS
T ss_pred HHHCCCcHHHHHHHcCcCCC--------CHHHHHHHHHHHcCCC
Confidence 3689999999999885 33 7899999999886654
No 49
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=92.65 E-value=0.059 Score=38.88 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.4
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||+..|..||.-|..| |+..|+.||..+
T Consensus 24 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 53 (60)
T 2d9a_A 24 RQFGQQDWKFLASHFPNR--------TDQQCQYRWLRV 53 (60)
T ss_dssp HHTCTTCHHHHHHHCSSS--------CHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHccCC--------CHHHHHHHHHHH
Confidence 468999999999998655 789999999864
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=92.56 E-value=0.047 Score=42.26 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
.|| .+|..||.-|.+| |+..|+.+|..|
T Consensus 35 ~~G-~~W~~IA~~v~~R--------T~~qcr~r~~~~ 62 (79)
T 2yus_A 35 MYK-DDWNKVSEHVGSR--------TQDECILHFLRL 62 (79)
T ss_dssp HSS-SCHHHHHHHHSSC--------CHHHHHHHHTTS
T ss_pred HhC-CCHHHHHHHcCCC--------CHHHHHHHHHHh
Confidence 588 8999999999877 689999999754
No 51
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=0.07 Score=39.69 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||+..|..||..|..| |+..|+.||...
T Consensus 25 ~~~G~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 54 (70)
T 2dim_A 25 MKYGKNQWSRIASLLHRK--------SAKQCKARWYEW 54 (70)
T ss_dssp HHTCSSCHHHHHHHSTTC--------CHHHHHHHHHHT
T ss_pred HHHCcCCHHHHHHHhcCC--------CHHHHHHHHHHH
Confidence 468999999999998765 789999999763
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=91.83 E-value=0.12 Score=39.94 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.8
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (331)
.-|..||..|+.+-- ..||.-|+.||..|+++|-.-
T Consensus 34 ~~W~~Ia~~m~~~G~----~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 34 HLWEQISSKMREKGF----DRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHH
Confidence 469999999998753 249999999999999999753
No 53
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=91.80 E-value=0.052 Score=38.06 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
..||..+|..||.-|..| |+..|+.||..
T Consensus 19 ~~~G~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 47 (52)
T 1gvd_A 19 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHN 47 (52)
T ss_dssp HHHCTTCHHHHHTTSTTC--------CHHHHHHHHHH
T ss_pred HHHCcChHHHHHHHcCCC--------CHHHHHHHHHH
Confidence 358999999999887655 78999999975
No 54
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.16 E-value=0.093 Score=40.21 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
.||.. |..||..| .| |+..|+.||+-|++....
T Consensus 40 ~~G~k-W~~IA~~l-gR--------t~~q~knRw~~L~~~~~~ 72 (73)
T 2llk_A 40 KHGND-WATIGAAL-GR--------SASSVKDRCRLMKDTCNT 72 (73)
T ss_dssp HHSSC-HHHHHHHH-TS--------CHHHHHHHHHHCSCCCSC
T ss_pred HHCCC-HHHHHHHh-CC--------CHHHHHHHHHHHHHHccC
Confidence 47876 99999999 88 579999999999987653
No 55
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.91 E-value=0.33 Score=36.31 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=28.7
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
.||. .|..||.-|..| |+..|+.+|..+-++..-
T Consensus 26 ~~G~-~W~~Ia~~~~~R--------t~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 26 KFGR-RWTKISKLIGSR--------TVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHSC
T ss_pred HHCc-CHHHHHHHcCCC--------CHHHHHHHHHHHHHHHHh
Confidence 5788 999999999887 679999999988777654
No 56
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=88.49 E-value=0.24 Score=38.80 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=28.2
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.+||.+.|-.||..-- ..++ . .|+..|+.||+-|.++=+
T Consensus 16 ~k~G~g~W~~I~~~~~--~~~~-~-RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 16 EHLGTGRWRDVKMRAF--DNAD-H-RTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp HHHCSSCHHHHHHHHC--TTCT-T-SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHhhc--cccC-C-CCHHHHHHHHHHHHHhcc
Confidence 4699999999998521 1111 2 389999999999887544
No 57
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=88.14 E-value=0.27 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=24.9
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
..||+.+|..||..|-.| |+..|+.||..
T Consensus 17 ~~~g~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 45 (107)
T 2k9n_A 17 MRYGAKDWIRISQLMITR--------NPRQCRERWNN 45 (107)
T ss_dssp HHHCSSCHHHHHHHTTTS--------CHHHHHHHHHH
T ss_pred HHHCCCCHHHHhhhcCCC--------CHHHHHHHHHH
Confidence 468999999999998766 68999999975
No 58
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.12 E-value=0.4 Score=35.07 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.||. .|..||. +..| |+..|+.||..+-+.--
T Consensus 26 ~~g~-~W~~Ia~-~~gR--------t~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 26 LMPT-QWRTIAP-IIGR--------TAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp HCTT-CHHHHHH-HHSS--------CHHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHhc-ccCc--------CHHHHHHHHHHHhChHh
Confidence 5787 9999999 7665 78999999998866543
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.97 E-value=0.27 Score=36.84 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=26.0
Q ss_pred CCCC-----CChhhHHHHHhhcCCCCCCCCChHhHHHhH-HHHHhhh
Q 020105 4 VGGV-----GASMRLSVELQTKTSLPHLLTTPQCCKQKY-RDLERRF 44 (331)
Q Consensus 4 rHGt-----~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky-~dL~rRf 44 (331)
.||. ..|..||..|..| |+..|+.|| ..|.+.-
T Consensus 25 ~~g~~~~~~~~W~~IA~~~~~R--------t~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 25 KYPPEEVESRRWQKIADELGNR--------TAKQVASQVQKYFIKLT 63 (75)
T ss_dssp HSCCCSCHHHHHHHHHHHHSSS--------CHHHHHHHHHHHHGGGS
T ss_pred HhCCCCCCcccHHHHHHHhCCC--------CHHHHHHHHHHHHHHHH
Confidence 4676 7899999999877 679999999 5555433
No 60
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.64 E-value=0.26 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 020105 5 GGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (331)
Q Consensus 5 HGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (331)
+..+.|+.||+=|-.| |++.|+.+|..|++=|..+
T Consensus 29 ~tp~rWe~IA~~V~gK--------T~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 29 HKPGFWSEVAAAVGSR--------SPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSSSHHHHHHHHTTTS--------CHHHHHHHHHHSSSSSCCC
T ss_pred CCccHHHHHHHHcCCC--------CHHHHHHHHHHHHhccccc
Confidence 4456799999998877 6899999999998887655
No 61
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=87.41 E-value=0.42 Score=38.10 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.||. .|..||..|..| |+..|+.||..|.++..
T Consensus 70 ~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 70 EYGP-KWNKISKFLKNR--------SDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HTCS-CHHHHHHHHSSS--------CHHHHHHHHHHHHHHHH
T ss_pred HhCc-CHHHHHHHCCCC--------CHHHHHHHHHHHHhhHH
Confidence 4776 799999998766 67999999999999864
No 62
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=85.79 E-value=0.16 Score=39.90 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=29.8
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
..||. .|..||.-|..| |+..|+.+|.-+.+|+.-
T Consensus 32 ~~~G~-~W~~IA~~l~gR--------t~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 32 LEHGR-NWSAIARMVGSK--------TVSQCKNFYFNYKKRQNL 66 (89)
Confidence 46888 799999999888 568999999999988864
No 63
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=84.72 E-value=0.26 Score=40.78 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
..||+.+|..||..|..| |+..|+.||..
T Consensus 18 ~~~g~~~W~~Ia~~~~~R--------t~~qcr~Rw~~ 46 (131)
T 3zqc_A 18 KENGPQNWPRITSFLPNR--------SPKQCRERWFN 46 (131)
T ss_dssp HHHCSCCGGGGTTSCTTS--------CHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHCCC--------CHHHHHHHHhh
Confidence 368999999999888665 68999999964
No 64
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=84.32 E-value=0.31 Score=38.52 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=24.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||..+|..||..|-.| |+..|+.||...
T Consensus 20 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 49 (105)
T 1gv2_A 20 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHNH 49 (105)
T ss_dssp HHHCTTCHHHHHTTSTTC--------CHHHHHHHHHHT
T ss_pred HHhCCCcHHHHhhhhcCC--------CHHHHHHHHHhc
Confidence 468999999999887655 689999999763
No 65
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=83.97 E-value=0.59 Score=39.20 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=30.0
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcC
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFND 46 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~ 46 (331)
.+||++.|..||...-. . ... .|+..|+.||+.|.+.-.-
T Consensus 47 ~k~G~g~W~~I~~~~~~--~-~~~-RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 47 EHLGTGRWRDVKFRAFE--N-VHH-RTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp HHHSSSCHHHHHHHHHS--S-SCC-CCHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCChHHHHHHhcc--c-cCC-CCHHHHHHHHHHHHhhccC
Confidence 46999999999987531 1 112 3899999999999976543
No 66
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=83.54 E-value=0.29 Score=41.60 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=7.0
Q ss_pred CCCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 020105 2 GNVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 2 ~~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
...||+.+|..||..|-.| |+..|+.||..
T Consensus 21 v~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~ 50 (159)
T 1h89_C 21 VEQNGTDDWKVIANYLPNR--------TDVQCQHRWQK 50 (159)
T ss_dssp ------------------------------CHHHHHHT
T ss_pred HHHhCCCCHHHHHHHcCCC--------CHHHHHHHHHH
Confidence 3579999999999998766 56889999975
No 67
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.15 E-value=0.26 Score=37.62 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
...|..||..|-.| |+..|+.||..|.+-++
T Consensus 41 ~~rW~~IA~~vpGR--------T~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 41 SDCWDKIARCVPSK--------SKEDCIARYKLLVSGPS 71 (73)
T ss_dssp HHHHHHHGGGCSSS--------CHHHHHHHHHHHHSSCC
T ss_pred CchHHHHHHHcCCC--------CHHHHHHHHHHHHHccc
Confidence 45799999888555 78999999999987665
No 68
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=81.98 E-value=0.56 Score=38.54 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (331)
.|| ..|..||..|..| |+..|+.||..|.+++.-.
T Consensus 79 ~~G-~~W~~Ia~~l~gR--------t~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 79 EYG-RQWAIIAKFFPGR--------TDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp HHC-SCHHHHHTTSTTC--------CHHHHHHHHHHHHHHTTC-
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHhcCCC
Confidence 467 4799999877665 6899999999999998754
No 69
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=81.51 E-value=0.58 Score=38.42 Aligned_cols=29 Identities=7% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||+ +|..||..|-.| |+..|+.||...
T Consensus 27 ~~~G~-~W~~Ia~~~~~R--------t~~qcr~Rw~~~ 55 (126)
T 3osg_A 27 AQHGS-DWKMIAATFPNR--------NARQCRDRWKNY 55 (126)
T ss_dssp HHHTT-CHHHHHHTCTTC--------CHHHHHHHHHHH
T ss_pred HHhCC-CHHHHHHHcCCC--------CHHHHHHHHhhh
Confidence 46898 999999887666 679999999863
No 70
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=80.19 E-value=0.88 Score=37.25 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=24.6
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD 39 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d 39 (331)
..||...|..||..|-.| |+..|+.||..
T Consensus 43 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~ 71 (128)
T 1h8a_C 43 QKYGPKRWSDIAKHLKGR--------IGKQCRERWHN 71 (128)
T ss_dssp HHTCSCCHHHHHHHSSSC--------CHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHhcCC--------cHHHHHHHHHH
Confidence 368999999999988655 67999999975
No 71
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=79.09 E-value=0.61 Score=36.79 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhh
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERR 43 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rR 43 (331)
.||. .|..||..|..| |+..|+.||+.|.+|
T Consensus 73 ~~G~-~W~~Ia~~l~gR--------t~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 73 RLGN-RWAEIAKLLPGR--------TDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHSS-CHHHHHTTCTTC--------CHHHHHHHHHHHTC-
T ss_pred HhCC-CHHHHHHHcCCC--------CHHHHHHHHHHHHhc
Confidence 4674 799999776555 789999999998776
No 72
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=78.01 E-value=0.96 Score=37.84 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.+||.+.|..||..+-. . ... .|+..|+.||+-|.+.-.
T Consensus 33 ~k~G~G~W~~Ia~~~~~--~-f~~-RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 33 EHLGTGRWRDVKMRAFD--N-ADH-RTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp HHHGGGCHHHHHHHHCS--C-CSS-CCSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHhcc--c-cCC-CCHHHHHHHHHHHHhhhc
Confidence 46999999999988732 1 112 288999999999998644
No 73
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.49 E-value=1.7 Score=32.91 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.4
Q ss_pred CChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhh
Q 020105 8 GASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRF 44 (331)
Q Consensus 8 ~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (331)
..|..||.-| .| |+..|+.+|..|+.-.
T Consensus 32 ~RW~~IA~~l-gR--------t~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 32 GRWEKIAHEL-GR--------SVTDVTTKAKQLKDSV 59 (72)
T ss_dssp THHHHHHHHH-TS--------CHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHh-CC--------CHHHHHHHHHHHHHhc
Confidence 5699999998 44 7899999999999875
No 74
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=77.30 E-value=0.69 Score=37.77 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=29.9
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhcCC
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFNDD 47 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs~~ 47 (331)
.+||.+.|..|+...- .. ... .|+..|+.||+-|.++-+-.
T Consensus 29 ~k~G~g~W~~I~~~~~--~~-f~~-RT~v~lKdrWrnllk~~~~~ 69 (105)
T 2aje_A 29 EKLGTGRWRDVKLCAF--ED-ADH-RTYVDLKDKWKTLVHTAKIS 69 (105)
T ss_dssp HHHCSSSHHHHHSSSS--SS-TTC-CCHHHHHHHHHHHHHTTTCC
T ss_pred HHhCCCChHHHHHHhc--cc-cCC-CCHHHHHHHHHHHHhhccCC
Confidence 4699999999996431 01 112 39999999999999876543
No 75
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=75.86 E-value=1.7 Score=34.55 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhh
Q 020105 7 VGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRF 44 (331)
Q Consensus 7 t~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRf 44 (331)
...|..||.-|-.| |+..|+.+|..|....
T Consensus 31 ~~rW~~IA~~vpGR--------T~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 31 PDRWANVARAVEGR--------TPEEVKKHYEILVEDI 60 (93)
T ss_dssp TTHHHHHHHHSTTC--------CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCC--------CHHHHHHHHHHHHHHH
Confidence 46799999999766 7899999999997664
No 76
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=67.38 E-value=2.1 Score=36.15 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=24.7
Q ss_pred CCCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHH
Q 020105 3 NVGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDL 40 (331)
Q Consensus 3 ~rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL 40 (331)
..||...|..||..|..| |+..|+.||..+
T Consensus 74 ~~~g~~~W~~Ia~~l~~R--------t~~qcr~Rw~~~ 103 (159)
T 1h89_C 74 QKYGPKRWSVIAKHLKGR--------IGKQCRERWHNH 103 (159)
T ss_dssp HHHCSCCHHHHHHTSTTC--------CHHHHHHHHHHT
T ss_pred HHhCcccHHHHHHHcCCC--------CHHHHHHHHHHH
Confidence 358988999999988655 689999999753
No 77
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=62.83 E-value=4.7 Score=28.71 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.6
Q ss_pred HhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 020105 66 LRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (331)
Q Consensus 66 LRklRVAELrrever~d~sI-gsLq~kvk~L~ee 98 (331)
+-++.|+|||.|+.+.-+++ |.=+-=|++|.+.
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 56999999999999999986 4444467888765
No 78
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.98 E-value=5.2 Score=28.87 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.1
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHh
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLER 42 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~r 42 (331)
.|| -.|..||.-|.+| |+..|...|-.-++
T Consensus 29 ~~g-k~w~~Ia~~l~~r--------t~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 29 QHP-KNFGLIASYLERK--------SVPDCVLYYYLTKK 58 (61)
T ss_dssp HST-TCHHHHHHHCTTS--------CHHHHHHHHHHHTC
T ss_pred HhC-CCHHHHHHHcCCC--------CHHHHHHHHHHhcC
Confidence 377 5899999888776 56889998865543
No 79
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=59.59 E-value=4.7 Score=29.28 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=26.2
Q ss_pred HhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 020105 66 LRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (331)
Q Consensus 66 LRklRVAELrrever~d~sI-gsLq~kvk~L~ee 98 (331)
|-|++|+|||.++.+..+++ |.=+-=|++|++-
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 67999999999999999986 4444456777764
No 80
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=56.04 E-value=6.2 Score=36.48 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.|| .+|..||.-|.+| |...|+..|..-++||.
T Consensus 150 kYG-KDW~~IAk~VgTK--------T~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 150 KYG-RDFQAISDVIGNK--------SVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp HHS-SCHHHHHHHHSSC--------CHHHHHHHHHHTTTTTT
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHHhh
Confidence 467 4799999999888 57899999998888885
No 81
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=55.56 E-value=4.1 Score=33.39 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHH-HHhhhcCC
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRD-LERRFNDD 47 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~d-L~rRfs~~ 47 (331)
.|| ..|..||..|..| |+..|+.||+. |++++..+
T Consensus 71 ~~G-~~W~~Ia~~l~gR--------t~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 71 KLG-SKWSVIAKLIPGR--------TDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp HSC-SCHHHHTTTSTTC--------CHHHHHHHHHHTTGGGCCCC
T ss_pred HHC-cCHHHHHHHcCCC--------CHHHHHHHHHHHHHHHhhcC
Confidence 467 4699999877665 68999999976 55556543
No 82
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=49.01 E-value=8.4 Score=29.75 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHhh
Q 020105 65 HLRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEER 99 (331)
Q Consensus 65 ELRklRVAELrrever~d~sI-gsLq~kvk~L~eer 99 (331)
.|-++.|+|||.|+.+.-+++ |.=+-=|+||++.-
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~ 60 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQ 60 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 567999999999999999997 45555788888763
No 83
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=47.63 E-value=14 Score=28.86 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCccCcHHHHHHHHHHHHHHH
Q 020105 271 LETIQTRVERGSYSACILTFYRDLLLLFNNA 301 (331)
Q Consensus 271 L~TIk~KL~~g~Y~S~~~EF~rDl~Lmf~NA 301 (331)
..-|+..+.+|.|.|.+ |.++|...++..-
T Consensus 15 ~~~i~~~V~sG~Y~s~S-EviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSAS-EVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHHH
Confidence 34688999999999999 9999988777653
No 84
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.74 E-value=21 Score=26.95 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=28.3
Q ss_pred HHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 020105 65 HLRKVRVDELKRELQRCDLSILSLQLQVKKLEE 97 (331)
Q Consensus 65 ELRklRVAELrrever~d~sIgsLq~kvk~L~e 97 (331)
..|..|+.||..+++..|.-|+.|+.++.++..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999887653
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.47 E-value=41 Score=26.04 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 020105 72 DELKRELQRCDLSILSLQLQVKKLEEE 98 (331)
Q Consensus 72 AELrrever~d~sIgsLq~kvk~L~ee 98 (331)
.-||+.|.-+-+.-..||.||+.|.+|
T Consensus 52 ~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 52 QSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999997
No 86
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=42.04 E-value=16 Score=25.97 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHHHh
Q 020105 65 HLRKVRVDELKRELQRCDLSI-LSLQLQVKKLEEE 98 (331)
Q Consensus 65 ELRklRVAELrrever~d~sI-gsLq~kvk~L~ee 98 (331)
.|-++.|+|||.++.+.-+++ |.=+-=|+||.+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 366899999999999999986 4444567888764
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.72 E-value=60 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 020105 71 VDELKRELQRCDLSILSLQLQVKKLEEERE 100 (331)
Q Consensus 71 VAELrrever~d~sIgsLq~kvk~L~eere 100 (331)
+.-||+.|...-+...-||.+|+.|++|=.
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999843
No 88
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.02 E-value=25 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHhhhhhhhHHHHHHHHHH
Q 020105 68 KVRVDELKRELQRCDLSILSLQLQVKKL 95 (331)
Q Consensus 68 klRVAELrrever~d~sIgsLq~kvk~L 95 (331)
+.++..+..+|+.+..+|..|+.+|+.+
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788889999999999999988765
No 89
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=37.00 E-value=21 Score=22.23 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.2
Q ss_pred chHHHHhHhhHHHHHHH
Q 020105 61 PWLEHLRKVRVDELKRE 77 (331)
Q Consensus 61 ~W~eELRklRVAELrre 77 (331)
+=|+.||..|+++|...
T Consensus 5 ~ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 5 EELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45899999999999764
No 90
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.20 E-value=52 Score=23.52 Aligned_cols=33 Identities=30% Similarity=0.263 Sum_probs=24.9
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 020105 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (331)
Q Consensus 67 RklRVAELrrever~d~sIgsLq~kvk~L~eer 99 (331)
+|.++.+|-.+|+....-...|+.+|..|.+|-
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777778888888887763
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.52 E-value=61 Score=24.75 Aligned_cols=34 Identities=38% Similarity=0.477 Sum_probs=25.8
Q ss_pred HHHHhH--hhHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 020105 63 LEHLRK--VRVDELKRELQRCDLSILSLQLQVKKLE 96 (331)
Q Consensus 63 ~eELRk--lRVAELrrever~d~sIgsLq~kvk~L~ 96 (331)
.+|||. .|+++|-.++...|.-|-.||+++-+++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344543 4888888889889999999988886653
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.17 E-value=70 Score=22.92 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.9
Q ss_pred hHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 020105 67 RKVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (331)
Q Consensus 67 RklRVAELrrever~d~sIgsLq~kvk~L~eere 100 (331)
++.++.+|-.+|+....-...|+..|..|.++-.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777788888888887643
No 93
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.62 E-value=36 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHhhcC
Q 020105 82 DLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 82 d~sIgsLq~kvk~L~eere~ 101 (331)
-.-|..|+.|+..|++|++.
T Consensus 14 keQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999874
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.27 E-value=94 Score=24.39 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=25.4
Q ss_pred HHHhHhh------HHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 020105 64 EHLRKVR------VDELKRELQRCDLSILSLQLQVKKLEEE 98 (331)
Q Consensus 64 eELRklR------VAELrrever~d~sIgsLq~kvk~L~ee 98 (331)
|.|.+|| +..-+.++++-.--|-.++.+|+.|+..
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5566666 5666677777778888888888888764
No 95
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=24.29 E-value=30 Score=34.96 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCCCCChhhHHHHHhhcCCCCCCCCChHhHHHhHHHHHhhhc
Q 020105 4 VGGVGASMRLSVELQTKTSLPHLLTTPQCCKQKYRDLERRFN 45 (331)
Q Consensus 4 rHGt~~WdsVA~Evq~Rs~~~~~~~Tp~~Cr~Ky~dL~rRfs 45 (331)
.||. +|..||.=|.+| |+.-|+.-|..-++||.
T Consensus 397 ~yGk-dw~~IA~~VgTK--------T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 397 KYGR-DFQAISDVIGNK--------SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp HHTT-CHHHHHHHHSSC--------CHHHHHHHHHHTTTTTT
T ss_pred HHCc-CHHHHHHHhCCC--------CHHHHHHHHHHHHHHhC
Confidence 5786 899999999888 56899999988788885
No 96
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=23.36 E-value=26 Score=29.38 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.1
Q ss_pred chHHHHhHhhHHHHH
Q 020105 61 PWLEHLRKVRVDELK 75 (331)
Q Consensus 61 ~W~eELRklRVAELr 75 (331)
+=||+||+.|+|||.
T Consensus 3 ~ELeaIR~~Rl~ELq 17 (127)
T 2jxn_A 3 PELQCIRECRLAQLK 17 (127)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999999999986
No 97
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.19 E-value=1.2e+02 Score=20.99 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 020105 71 VDELKRELQRCDLSILSLQLQVKKLEEEREK 101 (331)
Q Consensus 71 VAELrrever~d~sIgsLq~kvk~L~eere~ 101 (331)
++-.=||..+-.--|-.||.|++.|++.-.+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555689999999999999999999987443
No 98
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.09 E-value=1.9e+02 Score=23.45 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=40.0
Q ss_pred ChHhHHHhHHHHHhhhcCCCCCCCCCCCCCccchHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 020105 29 TPQCCKQKYRDLERRFNDDPQPHNNNNHNVHVPWLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEERE 100 (331)
Q Consensus 29 Tp~~Cr~Ky~dL~rRfs~~~~~~~~~~~~~~~~W~eELRklRVAELrrever~d~sIgsLq~kvk~L~eere 100 (331)
|-+.--+.|-+|-+|++. .-+|=++||.. -..++..|-.|+.+|++|..|-.
T Consensus 31 SKqELIqEYl~LE~~~s~---------------le~e~~rlr~~-----~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSR---------------MEDENNRLRLE-----SKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp CHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-----hccchhhHHHHHHHHHHHHHHHH
Confidence 567777899999999973 34566666655 45568999999999999998854
No 99
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.50 E-value=1.1e+02 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=25.7
Q ss_pred hHHHHhHhhHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Q 020105 62 WLEHLRKVRVDELKRELQRCDLSILSLQLQVKKLEEER 99 (331)
Q Consensus 62 W~eELRklRVAELrrever~d~sIgsLq~kvk~L~eer 99 (331)
.+-+=+|.+..+|-.+|+.-..-...|..+|..|+.|-
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777776666777777777777763
No 100
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=21.07 E-value=65 Score=26.60 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=26.1
Q ss_pred hHHHHhHhhHHHHHHHHhhhhhhh-HHHHHHHHHHH
Q 020105 62 WLEHLRKVRVDELKRELQRCDLSI-LSLQLQVKKLE 96 (331)
Q Consensus 62 W~eELRklRVAELrrever~d~sI-gsLq~kvk~L~ 96 (331)
-+..|.|+.||||+..+....+++ |.=+-=+++++
T Consensus 33 ~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~ 68 (114)
T 2rnn_A 33 TITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIR 68 (114)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHH
Confidence 456699999999999999999997 33333344444
No 101
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=20.97 E-value=16 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.3
Q ss_pred chHHHHhHhhHHHHHHH
Q 020105 61 PWLEHLRKVRVDELKRE 77 (331)
Q Consensus 61 ~W~eELRklRVAELrre 77 (331)
+=||+||+.|++||.+.
T Consensus 3 ~ELe~IR~~rl~eLq~q 19 (116)
T 2hvu_A 3 PELQCIRECRLAQLKNN 19 (116)
T ss_dssp SHHHHHHHHHHHTCSCT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45899999999999754
Done!