Query 020106
Match_columns 331
No_of_seqs 200 out of 1396
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.9E-34 6.6E-39 236.6 11.2 104 22-125 1-104 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.7E-34 5.7E-39 235.2 10.3 103 20-122 2-104 (105)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 9.5E-34 3.2E-38 238.8 10.6 109 14-122 19-127 (128)
4 3osg_A MYB21; transcription-DN 100.0 2.1E-33 7.2E-38 236.7 12.0 106 16-122 5-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 1.9E-33 6.7E-38 238.2 7.6 104 22-125 2-105 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-31 4.4E-36 233.1 10.3 108 15-122 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.5E-29 5.1E-34 220.1 6.2 102 19-120 3-105 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.5E-22 5.2E-27 154.3 4.9 67 16-82 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.6E-20 5.4E-25 158.0 5.9 73 48-120 1-74 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 3.1E-19 1.1E-23 165.3 8.1 106 18-123 4-201 (246)
11 2juh_A Telomere binding protei 99.8 8.2E-19 2.8E-23 148.0 7.8 88 11-98 6-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 5.4E-18 1.9E-22 125.3 6.0 58 16-73 2-59 (60)
13 2roh_A RTBP1, telomere binding 99.7 1.2E-17 4.2E-22 141.0 8.7 82 14-95 23-114 (122)
14 2llk_A Cyclin-D-binding MYB-li 99.7 5.1E-18 1.7E-22 131.5 5.1 58 60-118 9-66 (73)
15 1ity_A TRF1; helix-turn-helix, 99.7 6.7E-18 2.3E-22 128.4 5.6 65 14-78 2-68 (69)
16 1gvd_A MYB proto-oncogene prot 99.7 9.4E-18 3.2E-22 120.7 4.6 52 20-71 1-52 (52)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 1.5E-17 5E-22 119.6 4.3 52 20-71 1-52 (52)
18 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-16 3.7E-21 122.7 6.7 58 68-125 3-60 (72)
19 2din_A Cell division cycle 5-l 99.7 1.2E-16 4.1E-21 120.3 6.3 59 67-126 2-60 (66)
20 3sjm_A Telomeric repeat-bindin 99.6 6.4E-17 2.2E-21 122.1 4.5 55 19-73 8-64 (64)
21 1x41_A Transcriptional adaptor 99.6 2.1E-16 7.2E-21 117.2 5.9 55 17-71 3-57 (60)
22 2din_A Cell division cycle 5-l 99.6 1.9E-16 6.6E-21 119.2 2.8 60 15-76 2-61 (66)
23 1w0t_A Telomeric repeat bindin 99.6 5.1E-16 1.7E-20 112.2 4.5 49 21-69 1-51 (53)
24 2elk_A SPCC24B10.08C protein; 99.6 9.5E-16 3.2E-20 113.1 5.5 51 18-68 5-56 (58)
25 2d9a_A B-MYB, MYB-related prot 99.6 1.6E-15 5.5E-20 112.0 5.6 53 69-121 3-56 (60)
26 1guu_A C-MYB, MYB proto-oncoge 99.6 3E-15 1E-19 107.4 6.6 49 72-120 1-50 (52)
27 2yum_A ZZZ3 protein, zinc fing 99.6 1.2E-15 4.2E-20 117.3 4.0 60 17-76 3-67 (75)
28 1w0t_A Telomeric repeat bindin 99.6 3.4E-15 1.2E-19 107.9 6.0 50 73-122 1-53 (53)
29 2cu7_A KIAA1915 protein; nucle 99.5 2.5E-15 8.4E-20 115.1 4.6 59 15-74 2-60 (72)
30 1gvd_A MYB proto-oncogene prot 99.5 6.7E-15 2.3E-19 105.7 5.7 49 72-120 1-50 (52)
31 1x41_A Transcriptional adaptor 99.5 6.6E-15 2.3E-19 109.1 5.7 52 69-120 3-55 (60)
32 1ity_A TRF1; helix-turn-helix, 99.5 1.5E-14 5.3E-19 109.7 7.3 57 67-123 3-62 (69)
33 2yum_A ZZZ3 protein, zinc fing 99.5 1.3E-14 4.3E-19 111.6 4.5 56 69-124 3-64 (75)
34 2dim_A Cell division cycle 5-l 99.5 2.5E-14 8.5E-19 108.7 5.8 54 69-122 4-58 (70)
35 3sjm_A Telomeric repeat-bindin 99.5 5.2E-14 1.8E-18 106.1 6.7 50 72-121 9-61 (64)
36 2ltp_A Nuclear receptor corepr 99.2 3.2E-15 1.1E-19 119.3 0.0 58 66-123 8-65 (89)
37 2elk_A SPCC24B10.08C protein; 99.5 4.7E-14 1.6E-18 104.0 6.0 49 70-118 5-55 (58)
38 2ckx_A NGTRF1, telomere bindin 99.5 9E-14 3.1E-18 110.1 7.2 69 23-91 1-79 (83)
39 2yus_A SWI/SNF-related matrix- 99.5 8E-14 2.7E-18 109.2 6.7 54 13-67 9-62 (79)
40 2llk_A Cyclin-D-binding MYB-li 99.5 7E-14 2.4E-18 108.3 6.0 58 13-73 14-71 (73)
41 2aje_A Telomere repeat-binding 99.4 4.9E-14 1.7E-18 116.2 5.2 79 16-94 7-95 (105)
42 3zqc_A MYB3; transcription-DNA 99.4 9.4E-14 3.2E-18 117.2 3.8 84 15-103 47-130 (131)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4.2E-13 1.4E-17 103.9 6.7 51 70-120 14-68 (73)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.5E-13 5.2E-18 106.3 3.3 57 13-69 9-68 (73)
45 2ltp_A Nuclear receptor corepr 99.0 1.2E-13 4.1E-18 110.2 0.0 57 13-70 7-63 (89)
46 2yus_A SWI/SNF-related matrix- 99.3 9.2E-13 3.2E-17 103.2 4.5 48 71-118 15-62 (79)
47 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.6E-12 5.6E-17 105.2 4.7 56 15-71 49-104 (105)
48 1x58_A Hypothetical protein 49 99.3 3.3E-12 1.1E-16 96.0 5.9 50 72-121 6-58 (62)
49 2ckx_A NGTRF1, telomere bindin 99.3 5.2E-12 1.8E-16 99.9 6.9 49 75-123 1-54 (83)
50 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.1E-12 7.2E-17 105.4 3.8 55 16-71 47-101 (107)
51 3osg_A MYB21; transcription-DN 99.2 7.7E-12 2.6E-16 104.9 6.7 52 69-120 6-57 (126)
52 2cjj_A Radialis; plant develop 99.2 1.4E-11 4.8E-16 99.4 7.6 54 73-126 7-64 (93)
53 2aje_A Telomere repeat-binding 99.2 1.2E-11 4E-16 102.0 7.1 54 69-122 8-66 (105)
54 2juh_A Telomere binding protei 99.2 9.6E-12 3.3E-16 104.8 6.6 56 67-122 10-70 (121)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 5.4E-12 1.9E-16 117.0 4.3 54 70-123 4-63 (246)
56 2roh_A RTBP1, telomere binding 99.1 5E-11 1.7E-15 100.6 6.8 55 69-123 26-85 (122)
57 2cjj_A Radialis; plant develop 99.1 4.2E-11 1.5E-15 96.6 3.2 48 21-68 7-57 (93)
58 3hm5_A DNA methyltransferase 1 99.0 1.2E-09 4.2E-14 88.1 7.1 66 57-126 17-87 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 6.5E-10 2.2E-14 82.6 4.9 46 73-118 11-56 (61)
60 1x58_A Hypothetical protein 49 98.9 6.4E-10 2.2E-14 83.5 3.7 50 19-69 5-57 (62)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 2E-09 7E-14 79.9 5.6 49 19-68 9-57 (61)
62 2iw5_B Protein corest, REST co 98.9 2.1E-09 7.3E-14 99.0 6.4 77 44-121 104-180 (235)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.7E-09 1.9E-13 80.4 6.3 50 71-121 5-58 (72)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 6.5E-09 2.2E-13 80.0 4.2 50 19-69 5-57 (72)
65 2xag_B REST corepressor 1; ami 98.6 2.2E-08 7.4E-13 101.1 4.2 44 75-118 381-424 (482)
66 1fex_A TRF2-interacting telome 98.5 3.9E-08 1.3E-12 72.9 2.8 48 22-69 2-58 (59)
67 1wgx_A KIAA1903 protein; MYB D 98.5 1E-07 3.5E-12 73.7 4.8 48 22-69 8-58 (73)
68 1wgx_A KIAA1903 protein; MYB D 98.5 9.7E-08 3.3E-12 73.8 4.3 46 74-119 8-57 (73)
69 2iw5_B Protein corest, REST co 98.4 3E-07 1E-11 84.8 5.9 50 19-69 130-179 (235)
70 1fex_A TRF2-interacting telome 98.4 4.3E-07 1.5E-11 67.3 5.0 46 74-119 2-57 (59)
71 1ofc_X ISWI protein; nuclear p 98.3 1.5E-06 5.2E-11 83.3 9.4 104 23-127 111-281 (304)
72 1ug2_A 2610100B20RIK gene prod 98.2 1.3E-06 4.5E-11 70.0 5.6 50 76-125 35-87 (95)
73 2yqk_A Arginine-glutamic acid 98.1 4.8E-06 1.6E-10 62.1 6.2 48 70-117 5-53 (63)
74 2lr8_A CAsp8-associated protei 97.4 4E-07 1.4E-11 69.4 0.0 46 76-122 16-64 (70)
75 4iej_A DNA methyltransferase 1 98.0 1.1E-05 3.9E-10 64.9 7.1 62 62-127 22-88 (93)
76 2yqk_A Arginine-glutamic acid 98.0 6.9E-06 2.4E-10 61.3 4.9 51 15-66 2-53 (63)
77 4eef_G F-HB80.4, designed hema 98.0 1.6E-06 5.3E-11 67.1 1.1 43 74-116 20-66 (74)
78 4eef_G F-HB80.4, designed hema 97.9 9.2E-07 3.2E-11 68.4 -1.3 53 13-65 10-66 (74)
79 3hm5_A DNA methyltransferase 1 97.7 9.5E-06 3.3E-10 65.4 1.6 47 22-69 30-81 (93)
80 2crg_A Metastasis associated p 97.6 0.00011 3.7E-09 55.9 6.0 44 74-117 8-52 (70)
81 4a69_C Nuclear receptor corepr 97.6 8.6E-05 2.9E-09 59.6 5.6 44 74-117 43-86 (94)
82 2xag_B REST corepressor 1; ami 97.5 8.1E-05 2.8E-09 75.2 5.4 47 20-67 378-424 (482)
83 4b4c_A Chromodomain-helicase-D 97.4 0.00076 2.6E-08 60.0 10.3 107 18-124 3-199 (211)
84 4a69_C Nuclear receptor corepr 97.4 9.7E-05 3.3E-09 59.3 3.6 44 22-66 43-86 (94)
85 2y9y_A Imitation switch protei 97.3 0.0006 2E-08 67.0 9.0 104 23-127 124-297 (374)
86 2crg_A Metastasis associated p 97.3 0.00029 1E-08 53.5 4.8 45 21-66 7-52 (70)
87 2ebi_A DNA binding protein GT- 97.3 0.00024 8.3E-09 55.3 4.4 50 74-123 4-67 (86)
88 2ebi_A DNA binding protein GT- 97.0 0.00031 1.1E-08 54.7 2.3 49 21-69 3-64 (86)
89 2lr8_A CAsp8-associated protei 96.0 0.00013 4.4E-09 55.7 0.0 45 24-69 16-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.9 0.00051 1.7E-08 55.1 3.2 45 24-68 35-81 (95)
91 4iej_A DNA methyltransferase 1 95.4 0.012 4.1E-07 47.3 3.9 47 22-69 30-81 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.0 0.037 1.3E-06 41.5 5.3 50 18-67 3-56 (64)
93 1ofc_X ISWI protein; nuclear p 94.3 0.071 2.4E-06 51.0 6.7 49 74-122 110-159 (304)
94 1irz_A ARR10-B; helix-turn-hel 94.1 0.15 5.1E-06 38.2 6.7 48 72-119 5-57 (64)
95 4b4c_A Chromodomain-helicase-D 93.7 0.093 3.2E-06 46.4 5.8 54 71-124 4-62 (211)
96 2xb0_X Chromo domain-containin 90.3 0.2 6.9E-06 47.1 4.0 29 23-51 169-197 (270)
97 2xb0_X Chromo domain-containin 85.8 2 7E-05 40.2 7.7 51 74-124 3-58 (270)
98 2o8x_A Probable RNA polymerase 69.1 5.7 0.00019 27.7 4.1 43 80-123 18-60 (70)
99 1ku3_A Sigma factor SIGA; heli 66.3 7 0.00024 28.1 4.2 43 80-123 13-59 (73)
100 2y9y_A Imitation switch protei 65.3 10 0.00035 37.1 6.3 47 74-120 123-171 (374)
101 2p7v_B Sigma-70, RNA polymeras 61.6 7.1 0.00024 27.7 3.4 42 80-122 8-53 (68)
102 2jvw_A Uncharacterized protein 61.0 4.7 0.00016 31.8 2.4 46 30-87 18-70 (88)
103 3cz6_A DNA-binding protein RAP 58.8 12 0.00042 32.7 5.0 32 17-51 109-148 (168)
104 3hug_A RNA polymerase sigma fa 57.5 15 0.0005 27.6 4.7 44 80-124 40-83 (92)
105 2li6_A SWI/SNF chromatin-remod 55.5 9.1 0.00031 30.9 3.4 38 84-121 53-98 (116)
106 2lm1_A Lysine-specific demethy 51.8 21 0.00072 28.1 5.0 39 83-121 47-97 (107)
107 1or7_A Sigma-24, RNA polymeras 48.8 26 0.0009 28.7 5.4 32 92-124 155-186 (194)
108 2q1z_A RPOE, ECF SIGE; ECF sig 47.5 18 0.00061 29.6 4.1 31 92-123 150-180 (184)
109 2jrz_A Histone demethylase jar 46.6 19 0.00063 29.2 3.9 39 83-121 43-93 (117)
110 1x3u_A Transcriptional regulat 46.4 33 0.0011 24.3 5.0 42 77-121 17-58 (79)
111 1kkx_A Transcription regulator 45.5 13 0.00043 30.6 2.8 40 84-123 52-99 (123)
112 2eqy_A RBP2 like, jumonji, at 45.0 24 0.00083 28.7 4.4 39 84-122 46-96 (122)
113 2cxy_A BAF250B subunit, HBAF25 44.1 24 0.00082 28.8 4.3 40 83-122 54-105 (125)
114 2jpc_A SSRB; DNA binding prote 43.7 39 0.0013 22.8 4.8 39 82-122 3-41 (61)
115 1tty_A Sigma-A, RNA polymerase 43.5 27 0.00091 26.0 4.2 42 80-122 21-66 (87)
116 3c57_A Two component transcrip 42.7 37 0.0013 25.7 5.0 44 76-122 27-70 (95)
117 3ulq_B Transcriptional regulat 41.0 49 0.0017 25.1 5.4 46 73-121 26-71 (90)
118 2p1m_A SKP1-like protein 1A; F 40.1 19 0.00064 30.4 3.1 36 45-87 118-153 (160)
119 1rp3_A RNA polymerase sigma fa 39.6 41 0.0014 28.3 5.3 38 85-123 195-232 (239)
120 1je8_A Nitrate/nitrite respons 39.6 37 0.0013 25.0 4.4 43 76-121 21-63 (82)
121 3mzy_A RNA polymerase sigma-H 39.3 50 0.0017 25.9 5.5 32 92-124 123-154 (164)
122 1fse_A GERE; helix-turn-helix 38.6 42 0.0014 23.3 4.4 44 75-121 10-53 (74)
123 2li6_A SWI/SNF chromatin-remod 38.5 12 0.0004 30.3 1.5 39 32-70 53-98 (116)
124 2rq5_A Protein jumonji; develo 37.8 14 0.00049 30.4 1.9 44 44-90 65-113 (121)
125 1xsv_A Hypothetical UPF0122 pr 37.2 55 0.0019 25.8 5.4 43 80-123 28-70 (113)
126 3cz6_A DNA-binding protein RAP 36.8 74 0.0025 27.8 6.4 27 60-86 99-126 (168)
127 3v7d_A Suppressor of kinetocho 35.5 22 0.00077 30.4 2.9 41 45-97 126-166 (169)
128 3i4p_A Transcriptional regulat 34.9 19 0.00066 29.9 2.4 43 28-71 3-45 (162)
129 2jxj_A Histone demethylase jar 34.8 16 0.00055 28.2 1.7 37 84-120 40-88 (96)
130 2rnj_A Response regulator prot 34.5 45 0.0015 24.8 4.2 42 77-121 30-71 (91)
131 2kk0_A AT-rich interactive dom 33.5 41 0.0014 28.2 4.2 40 83-122 67-119 (145)
132 1ig6_A MRF-2, modulator recogn 33.5 23 0.0008 27.9 2.5 38 83-120 36-86 (107)
133 2yqf_A Ankyrin-1; death domain 33.5 55 0.0019 25.8 4.8 35 78-113 14-48 (111)
134 1c20_A DEAD ringer protein; DN 32.9 49 0.0017 27.0 4.5 41 83-123 55-108 (128)
135 3i4p_A Transcriptional regulat 31.3 41 0.0014 27.8 3.8 43 80-123 3-46 (162)
136 2ast_A S-phase kinase-associat 30.9 28 0.00097 29.1 2.8 56 25-87 94-154 (159)
137 1k78_A Paired box protein PAX5 28.8 2.1E+02 0.0073 22.5 8.6 77 23-103 31-118 (149)
138 1s7o_A Hypothetical UPF0122 pr 27.7 1E+02 0.0034 24.4 5.4 43 80-123 25-67 (113)
139 1p4w_A RCSB; solution structur 27.4 1.2E+02 0.0042 23.3 5.8 46 74-122 32-77 (99)
140 2dbb_A Putative HTH-type trans 26.1 1.1E+02 0.0039 24.4 5.6 43 80-123 9-52 (151)
141 1tc3_C Protein (TC3 transposas 25.5 1.2E+02 0.0041 18.5 5.2 38 76-115 5-42 (51)
142 2o71_A Death domain-containing 25.0 71 0.0024 25.7 4.0 34 75-112 20-53 (115)
143 2of5_H Leucine-rich repeat and 24.9 59 0.002 26.1 3.5 31 82-113 13-43 (118)
144 2rq5_A Protein jumonji; develo 24.7 67 0.0023 26.3 3.9 37 84-120 46-95 (121)
145 3e7l_A Transcriptional regulat 24.6 85 0.0029 21.9 4.0 33 80-113 19-51 (63)
146 1ntc_A Protein (nitrogen regul 24.1 1.1E+02 0.0037 23.0 4.8 35 79-114 50-84 (91)
147 1wxp_A THO complex subunit 1; 23.9 85 0.0029 24.7 4.3 31 82-113 18-48 (110)
148 2of5_A Death domain-containing 23.8 66 0.0023 25.9 3.7 37 72-112 17-53 (114)
149 2e1c_A Putative HTH-type trans 22.9 63 0.0021 27.2 3.5 42 28-70 27-68 (171)
150 2e1c_A Putative HTH-type trans 22.7 1E+02 0.0034 25.9 4.8 43 79-122 26-69 (171)
151 2cyy_A Putative HTH-type trans 21.0 1.3E+02 0.0045 24.1 5.0 43 80-123 7-50 (151)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.9e-34 Score=236.58 Aligned_cols=104 Identities=31% Similarity=0.656 Sum_probs=100.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh
Q 020106 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIAR 101 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk 101 (331)
||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHh
Q 020106 102 LFPGRTDNAVKNHWHVIMARKQRE 125 (331)
Q Consensus 102 ~LpgRT~nq~KnRW~~ilkrk~~~ 125 (331)
+|||||+++||+||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999876543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.7e-34 Score=235.24 Aligned_cols=103 Identities=48% Similarity=0.988 Sum_probs=99.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHH
Q 020106 20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALI 99 (331)
Q Consensus 20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~I 99 (331)
+++|+||+|||++|+++|++||..+|..||+.|++|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 67999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHH
Q 020106 100 ARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 100 Ak~LpgRT~nq~KnRW~~ilkrk 122 (331)
|++|||||+++||+||+.+++++
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999998875
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=9.5e-34 Score=238.76 Aligned_cols=109 Identities=46% Similarity=0.930 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020106 14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHG 93 (331)
Q Consensus 14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G 93 (331)
+...|.+++|+||+|||++|+++|++||.++|..||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 45778999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 94 NKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 94 ~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
++|+.||++|||||+++||+||+.+++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998775
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=2.1e-33 Score=236.74 Aligned_cols=106 Identities=37% Similarity=0.744 Sum_probs=101.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCh
Q 020106 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNK 95 (331)
Q Consensus 16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~k 95 (331)
..+..+||+||+|||++|+++|++||. +|..||+.|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 356788999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 96 WALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 96 Ws~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
|+.||++|||||+++||+||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988763
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.98 E-value=1.9e-33 Score=238.16 Aligned_cols=104 Identities=41% Similarity=0.832 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh
Q 020106 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIAR 101 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk 101 (331)
||+||+|||++|+++|.+||..+|..||..||+|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHh
Q 020106 102 LFPGRTDNAVKNHWHVIMARKQRE 125 (331)
Q Consensus 102 ~LpgRT~nq~KnRW~~ilkrk~~~ 125 (331)
+|||||+++||+||+.+++++...
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876543
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.3e-31 Score=233.14 Aligned_cols=108 Identities=45% Similarity=0.936 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN 94 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~ 94 (331)
...|.+++|+||+|||++|+++|++||..+|..||+.||+|++.||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 46788999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 95 KWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 95 kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
+|+.||++|||||+++|||||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998775
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.5e-29 Score=220.07 Aligned_cols=102 Identities=32% Similarity=0.736 Sum_probs=59.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhH
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN-KWA 97 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs 97 (331)
.+++++||+|||++|+++|++||..+|..||+.|++|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 4678999999999999999999988999999999999999999999999999999999999999999999999996 699
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHH
Q 020106 98 LIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 98 ~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
.||++|||||+.||++||+.++.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=154.33 Aligned_cols=67 Identities=37% Similarity=0.758 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHH
Q 020106 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEE 82 (331)
Q Consensus 16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED 82 (331)
..|.+++|+||+|||++|+++|++||..+|..||.+|++|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4578899999999999999999999988999999999999999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1.6e-20 Score=157.96 Aligned_cols=73 Identities=26% Similarity=0.690 Sum_probs=49.5
Q ss_pred HHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 48 IAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 48 IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
||+.||+|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||++|||||+.||++||..++.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999996 69999999999999999999998664
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=3.1e-19 Score=165.33 Aligned_cols=106 Identities=20% Similarity=0.319 Sum_probs=93.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhcCCCccccchhhhcccCCCCC-------------------
Q 020106 18 STCPRGHWRPAEDEKLRQLVEQYGAQN-----WNSIAEKLQGRSGKSCRLRWFNQLDPRIN------------------- 73 (331)
Q Consensus 18 p~~kKG~WT~EED~~L~~lV~kyG~~n-----W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~------------------- 73 (331)
+..+|++||+|||++|+++|+++|..+ |.+||+.|||||+.|||+||+.+|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 467899999999999999999998753 99999999999999999999999999987
Q ss_pred ----------CCCCCHHHHHHHHHHHHH---------------------------------hCC----------------
Q 020106 74 ----------RRPFTEDEEERLLAAHRI---------------------------------HGN---------------- 94 (331)
Q Consensus 74 ----------kg~WT~EED~~Llelv~~---------------------------------~G~---------------- 94 (331)
+..||.|||-.|+..+.+ +|.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 899999999999998876 121
Q ss_pred ---------hhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 95 ---------KWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 95 ---------kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
.|.+||+.+|+||.+++|+||+.+++..-
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~g 201 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYG 201 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHC
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Confidence 69999999999999999999999887663
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.76 E-value=8.2e-19 Score=147.97 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhcccC-----CCCCCC-CCCHH
Q 020106 11 DATKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQLD-----PRINRR-PFTED 80 (331)
Q Consensus 11 ~~~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L~-----p~i~kg-~WT~E 80 (331)
.......+..++++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||+++|+ |.++++ +|++|
T Consensus 6 ~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e 85 (121)
T 2juh_A 6 SKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD 85 (121)
T ss_dssp CCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHH
T ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHH
Confidence 334446778899999999999999999999998999999995 89999999999999998 999999 99999
Q ss_pred HHHHHHHHHHHhCChhHH
Q 020106 81 EEERLLAAHRIHGNKWAL 98 (331)
Q Consensus 81 ED~~Llelv~~~G~kWs~ 98 (331)
|+.+|++++..+|++|++
T Consensus 86 ~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 86 LLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccchhc
Confidence 999999999999999987
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.4e-18 Score=125.33 Aligned_cols=58 Identities=33% Similarity=0.736 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCC
Q 020106 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN 73 (331)
Q Consensus 16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~ 73 (331)
..|.+++++||+|||++|+++|.+||..+|..||++|++|+..||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 3578899999999999999999999987899999999999999999999999999875
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.72 E-value=1.2e-17 Score=140.96 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhccc-----CCCCCCCCCCHHH-HH
Q 020106 14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQL-----DPRINRRPFTEDE-EE 83 (331)
Q Consensus 14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L-----~p~i~kg~WT~EE-D~ 83 (331)
+......++++||+|||+.|+++|++||.++|..|++.+ ++||..||++||++++ +|.++++.|+++| +.
T Consensus 23 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~ 102 (122)
T 2roh_A 23 PDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLD 102 (122)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence 334567789999999999999999999998999999975 8999999999999999 8999999999999 89
Q ss_pred HHHHHHHHhCCh
Q 020106 84 RLLAAHRIHGNK 95 (331)
Q Consensus 84 ~Llelv~~~G~k 95 (331)
+|++++..||++
T Consensus 103 ~v~~~h~~~g~~ 114 (122)
T 2roh_A 103 RVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhhH
Confidence 999999999975
No 14
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=131.52 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=47.0
Q ss_pred cchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106 60 CRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI 118 (331)
Q Consensus 60 Cr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i 118 (331)
+--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999 99999999999865
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.71 E-value=6.7e-18 Score=128.37 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccCCCCCCCCCC
Q 020106 14 KSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLDPRINRRPFT 78 (331)
Q Consensus 14 ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~p~i~kg~WT 78 (331)
+.+.+..++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||+++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4567788999999999999999999999889999999999 9999999999999999999988654
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=9.4e-18 Score=120.71 Aligned_cols=52 Identities=46% Similarity=1.019 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
+++|+||+|||++|+++|.+||.++|..||+.|++|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999888999999999999999999999999984
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=1.5e-17 Score=119.56 Aligned_cols=52 Identities=40% Similarity=0.815 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
+++++||+|||++|+++|++||.++|..||+.|++|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999999999999999999999984
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.1e-16 Score=122.72 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=54.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106 68 LDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRE 125 (331)
Q Consensus 68 L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~ 125 (331)
++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.+++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999887654
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=120.30 Aligned_cols=59 Identities=20% Similarity=0.436 Sum_probs=55.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106 67 QLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQ 126 (331)
Q Consensus 67 ~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~ 126 (331)
+|+|.+++++||+|||++|+++|.+||.+|.+||+ |+|||++|||+||+.++++..+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999877554
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=6.4e-17 Score=122.06 Aligned_cols=55 Identities=24% Similarity=0.486 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccCCCCC
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLDPRIN 73 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~p~i~ 73 (331)
..+|++||+|||++|+++|++||.++|..||+.++ +|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999976 99999999999999998765
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.1e-16 Score=117.20 Aligned_cols=55 Identities=16% Similarity=0.433 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 17 TSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 17 ~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
.+.+.+++||+|||++|+++|++||..+|.+||++|++|++.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4578999999999999999999999888999999999999999999999999864
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=119.16 Aligned_cols=60 Identities=30% Similarity=0.498 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCC
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRP 76 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~ 76 (331)
.+.|.+++++||+|||++|+++|+.||. +|.+||+ ++||+..||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 4678999999999999999999999997 7999999 8899999999999999998876653
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=5.1e-16 Score=112.25 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc--CCCccccchhhhcccC
Q 020106 21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ--GRSGKSCRLRWFNQLD 69 (331)
Q Consensus 21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp--gRt~kQCr~Rw~n~L~ 69 (331)
++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 9999999999999875
No 24
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=9.5e-16 Score=113.15 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhccc
Q 020106 18 STCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQL 68 (331)
Q Consensus 18 p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L 68 (331)
.++.+++||+|||++|+++|++||..+|..||++|+ +|++.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456689999999999999999999889999999999 999999999999875
No 25
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-15 Score=112.01 Aligned_cols=53 Identities=28% Similarity=0.584 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||+.+|+.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 5788999999999999999999999 6999999999999999999999987653
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=3e-15 Score=107.43 Aligned_cols=49 Identities=27% Similarity=0.657 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
+++++||+|||++|+++|.+||. +|..||++|||||+.||++||+.+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998 89999999999999999999998874
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-15 Score=117.34 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhcCCCccccchhhhcccCCCCCCCC
Q 020106 17 TSTCPRGHWRPAEDEKLRQLVEQYGA-----QNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRP 76 (331)
Q Consensus 17 ~p~~kKG~WT~EED~~L~~lV~kyG~-----~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~ 76 (331)
.|.+.+++||+|||++|+++|++||. .+|..||++|++||..||++||.++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 6799999999999999999999999998777653
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=3.4e-15 Score=107.86 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHHH
Q 020106 73 NRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 73 ~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkrk 122 (331)
++++||+|||++|+++|.+|| ++|+.||+.|| |||+.||++||..++|.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998753
No 29
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=2.5e-15 Score=115.14 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCC
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINR 74 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~k 74 (331)
+..|.+++++||+|||++|+++|++||. +|..||++|++||..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999997 7999999999999999999999999876665
No 30
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.54 E-value=6.7e-15 Score=105.73 Aligned_cols=49 Identities=27% Similarity=0.683 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 69999999999999999999998753
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=6.6e-15 Score=109.11 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|||||+.||++||+.++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3578899999999999999999999 799999999999999999999998764
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.53 E-value=1.5e-14 Score=109.73 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=52.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHHHH
Q 020106 67 QLDPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 67 ~L~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkrk~ 123 (331)
..++..++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.|||+||+.+++...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 345678899999999999999999999 69999999999 9999999999999998654
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=111.64 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHG------NKWALIARLFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G------~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
+|.+++++||+|||++|+++|.+|| .+|.+||++|+|||+.||++||+.++++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999 7899999999999999999999888876543
No 34
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=108.74 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=50.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
.|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|+..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999 79999999999999999999999877643
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=5.2e-14 Score=106.09 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC--CCCHHHHHHHHHHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHG-NKWALIARLFP--GRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRW~~ilkr 121 (331)
.++++||+|||++|+++|.+|| ++|++||+.+| |||+.|||+||+.++|.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~ 61 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999 58999999866 99999999999998874
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.2e-15 Score=119.35 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=53.8
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 66 NQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 66 n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
..+.|.+++++||+|||++|+++|.+||++|+.||++|||||++|||+||+.++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3567889999999999999999999999999999999999999999999999987653
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=4.7e-14 Score=104.01 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhhcCC-CCCHHHHHHHHHHH
Q 020106 70 PRINRRPFTEDEEERLLAAHRIHG-NKWALIARLFP-GRTDNAVKNHWHVI 118 (331)
Q Consensus 70 p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk~Lp-gRT~nq~KnRW~~i 118 (331)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||..+
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999 89999999999 99999999999875
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.46 E-value=9e-14 Score=110.06 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHH----hcCCCccccchhhhccc-----CCCCCC-CCCCHHHHHHHHHHHHH
Q 020106 23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEK----LQGRSGKSCRLRWFNQL-----DPRINR-RPFTEDEEERLLAAHRI 91 (331)
Q Consensus 23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~----lpgRt~kQCr~Rw~n~L-----~p~i~k-g~WT~EED~~Llelv~~ 91 (331)
++||+|||+.|+++|++||.++|..|++. |++||..+|++||+++| .|.+++ .+..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999899999996 79999999999999988 676655 46777887889998864
No 39
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.46 E-value=8e-14 Score=109.24 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ 67 (331)
Q Consensus 13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~ 67 (331)
.+.......+++||+|||++|+++|++|| .+|.+||++|++||..||++||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34456677789999999999999999999 7899999999999999999999998
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.45 E-value=7e-14 Score=108.25 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCC
Q 020106 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRIN 73 (331)
Q Consensus 13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~ 73 (331)
.+...|.+++|+||+|||++|+++|++||.+ |..||+.| |||..||++||+. |....+
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 4567899999999999999999999999975 99999999 9999999999975 444433
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=4.9e-14 Score=116.16 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCccccchhhhccc-----CCCCCCCCCCHHHHHH-H
Q 020106 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL----QGRSGKSCRLRWFNQL-----DPRINRRPFTEDEEER-L 85 (331)
Q Consensus 16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~l----pgRt~kQCr~Rw~n~L-----~p~i~kg~WT~EED~~-L 85 (331)
..+..++++||+|||+.|+++|++||.++|..|++.+ ++||..+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3457889999999999999999999998999999965 8999999999999999 6899999888887765 8
Q ss_pred HHHHHHhCC
Q 020106 86 LAAHRIHGN 94 (331)
Q Consensus 86 lelv~~~G~ 94 (331)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.40 E-value=9.4e-14 Score=117.20 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGN 94 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~ 94 (331)
...|.+++|+||+|||++|+++|.+||. +|..||+.|+||+..||+.||+++|++.+..++|+.+- +........
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~ 121 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR 121 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence 3578899999999999999999999996 69999999999999999999999999999999988763 111122345
Q ss_pred hhHHHhhcC
Q 020106 95 KWALIARLF 103 (331)
Q Consensus 95 kWs~IAk~L 103 (331)
+|+.|++.|
T Consensus 122 ~~~~i~k~~ 130 (131)
T 3zqc_A 122 KAADVPKKL 130 (131)
T ss_dssp ---------
T ss_pred hhhhcchhc
Confidence 688888766
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=4.2e-13 Score=103.86 Aligned_cols=51 Identities=20% Similarity=0.422 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 70 PRINRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 70 p~i~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
+...+++||.|||.+|++++.+|| .+|.+||++|||||.++|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457789999999999999999999 789999999999999999999998764
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=1.5e-13 Score=106.32 Aligned_cols=57 Identities=18% Similarity=0.409 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhcccC
Q 020106 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L~ 69 (331)
.+...+...+++||+|||++|+.++++|| ..+|.+||++|||||..||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455678899999999999999999999 3469999999999999999999998765
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=110.21 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCC
Q 020106 13 TKSSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70 (331)
Q Consensus 13 ~ks~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p 70 (331)
.....|.+.+|+||+|||++|+++|.+||. +|..||.+|+|||..||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 455678899999999999999999999997 699999999999999999999998873
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=9.2e-13 Score=103.20 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106 71 RINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI 118 (331)
Q Consensus 71 ~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i 118 (331)
...+++||+|||++|+++|.+||.+|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999743
No 47
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.29 E-value=1.6e-12 Score=105.20 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
...|.+++|+||+|||++|+.+|.+||. +|..||+.||||+..||+.||+.+|+..
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 3568899999999999999999999996 6999999999999999999999988753
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=3.3e-12 Score=95.98 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHh---hcCCCCCHHHHHHHHHHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHGNKWALIA---RLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G~kWs~IA---k~LpgRT~nq~KnRW~~ilkr 121 (331)
.++.+||+|||+.|+++|++||.+|..|+ .+|++||..+||+||+.++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46889999999999999999999999999 588999999999999998875
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=5.2e-12 Score=99.94 Aligned_cols=49 Identities=27% Similarity=0.459 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHHH
Q 020106 75 RPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 75 g~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk~ 123 (331)
.+||+|||++|+++|.+||. +|+.|++. |+|||+.+||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999995 899999999999999988654
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.26 E-value=2.1e-12 Score=105.39 Aligned_cols=55 Identities=33% Similarity=0.589 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 16 STSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 16 ~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
+.|.+++|+||+|||++|+.+|.+||. +|..||+.||||+..||+.||..+++..
T Consensus 47 L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 47 INPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp SSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 567889999999999999999999997 6999999999999999999999887653
No 51
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.25 E-value=7.7e-12 Score=104.91 Aligned_cols=52 Identities=31% Similarity=0.611 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMA 120 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilk 120 (331)
.+..++++||+|||++|+++|.+||.+|..||+.||||+..||+.||..++.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4568899999999999999999999999999999999999999999998764
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=1.4e-11 Score=99.39 Aligned_cols=54 Identities=26% Similarity=0.527 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 020106 73 NRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMARKQREQ 126 (331)
Q Consensus 73 ~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~~ 126 (331)
.+++||.|||.+|++++.+|| ++|.+||++|||||.++|++||+.+++......
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999996 789999999999999999999999987764433
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-11 Score=101.95 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhcC----CCCCHHHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHGN-KWALIARLF----PGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~L----pgRT~nq~KnRW~~ilkrk 122 (331)
.+..++++||+|||++|+++|.+||. +|+.|++.+ +|||+.+||+||+.++++.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678899999999999999999997 999999965 8999999999999998854
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.23 E-value=9.6e-12 Score=104.83 Aligned_cols=56 Identities=29% Similarity=0.461 Sum_probs=50.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHH
Q 020106 67 QLDPRINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 67 ~L~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk 122 (331)
-+.+..++++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999997 99999997 49999999999999999864
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.21 E-value=5.4e-12 Score=117.01 Aligned_cols=54 Identities=24% Similarity=0.545 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCh------hHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 70 PRINRRPFTEDEEERLLAAHRIHGNK------WALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 70 p~i~kg~WT~EED~~Llelv~~~G~k------Ws~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+.+++++||+|||++|+++|.++|++ |++||++|||||+++||+||+.+|+++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence 35788999999999999999999875 9999999999999999999999998753
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.15 E-value=5e-11 Score=100.61 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-hhHHHhhc----CCCCCHHHHHHHHHHHHHHHH
Q 020106 69 DPRINRRPFTEDEEERLLAAHRIHGN-KWALIARL----FPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 69 ~p~i~kg~WT~EED~~Llelv~~~G~-kWs~IAk~----LpgRT~nq~KnRW~~ilkrk~ 123 (331)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+.+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999996 99999986 489999999999999988653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.07 E-value=4.2e-11 Score=96.59 Aligned_cols=48 Identities=15% Similarity=0.455 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhccc
Q 020106 21 PRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQL 68 (331)
Q Consensus 21 kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L 68 (331)
.+++||+|||++|+.++.+|| ..+|.+||+.|||||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467999999999999999997 456999999999999999999998865
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=88.12 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=59.5
Q ss_pred ccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Q 020106 57 GKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLF-----PGRTDNAVKNHWHVIMARKQREQ 126 (331)
Q Consensus 57 ~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~L-----pgRT~nq~KnRW~~ilkrk~~~~ 126 (331)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..+||+||..+.++.....
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35678999999986 89999999999999999999999999998 58999999999999988776554
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=82.60 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106 73 NRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI 118 (331)
Q Consensus 73 ~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i 118 (331)
...+||+||++++++++.+||.+|..||.+||+||..+|.++|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999754
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=6.4e-10 Score=83.51 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH---HhcCCCccccchhhhcccC
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAE---KLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~---~lpgRt~kQCr~Rw~n~L~ 69 (331)
+.++.+||+|||+.|+++|++||. +|..|+. ++++||...+++||+++..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 457899999999999999999997 8999995 5689999999999998765
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=79.90 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL 68 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L 68 (331)
+...++||+||++++.+++.+|| ++|..||.+||+|+..||.++|....
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 44568999999999999999999 58999999999999999999996543
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.87 E-value=2.1e-09 Score=98.99 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=57.0
Q ss_pred CHHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 44 NWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 44 nW~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
+|+.+-..|..++... .++++..-.......+||+||++++++++.+||++|..||+.+++||.+|||++|....||
T Consensus 104 ~~kQ~~~~L~~~~~~~-Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALKEKLDGG-IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHSTTT-TGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhh-cccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3555555554444322 2244432222334679999999999999999999999999999999999999999876554
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=5.7e-09 Score=80.38 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 71 RINRRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 71 ~i~kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
....+.||.||+.+|.+++.+|+ .+|.+||.+| |||..+|++||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34578999999999999999997 6899999998 99999999999988654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.73 E-value=6.5e-09 Score=80.04 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCCHHHHHHHhcCCCccccchhhhcccC
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYG---AQNWNSIAEKLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG---~~nW~~IA~~lpgRt~kQCr~Rw~n~L~ 69 (331)
....+.||.|||++|.+++.+|+ +..|.+||+.| ||+..+|+.||..++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 44577899999999999999998 34699999998 9999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.59 E-value=2.2e-08 Score=101.08 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHH
Q 020106 75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVI 118 (331)
Q Consensus 75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~i 118 (331)
.+||+||.+++++++.+||.+|..||+.++.||..|||++|...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999743
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.51 E-value=3.9e-08 Score=72.90 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHH-HhcCCCccccchhhhcccC
Q 020106 22 RGHWRPAEDEKLRQLVEQY--------GAQNWNSIAE-KLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~ky--------G~~nW~~IA~-~lpgRt~kQCr~Rw~n~L~ 69 (331)
|.+||+|||+.|+++|.+| |..-|+.+|+ .+|++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 7999999999999999875
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1e-07 Score=73.74 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhcCCCccccchhhhcccC
Q 020106 22 RGHWRPAEDEKLRQLVEQYGA---QNWNSIAEKLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~---~nW~~IA~~lpgRt~kQCr~Rw~n~L~ 69 (331)
...||.+|+.+|..++..|+. .+|.+||..|+||+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 467999999999999999975 469999999999999999999987764
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=9.7e-08 Score=73.84 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----ChhHHHhhcCCCCCHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHG----NKWALIARLFPGRTDNAVKNHWHVIM 119 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G----~kWs~IAk~LpgRT~nq~KnRW~~il 119 (331)
...||.||+.+|.+++..|+ .+|.+||..+||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 46999999999999999999998763
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.39 E-value=3e-07 Score=84.80 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccC
Q 020106 19 TCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 19 ~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~ 69 (331)
.....+||.||+.++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999 579999999999999999999988764
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.36 E-value=4.3e-07 Score=67.27 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCh-hHHHhh-cCCCCCHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIH--------GNK-WALIAR-LFPGRTDNAVKNHWHVIM 119 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~--------G~k-Ws~IAk-~LpgRT~nq~KnRW~~il 119 (331)
+.+||+|||..|++.|.+| |++ |.+||+ .+|++|-.++|+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 554 999999 899999999999998654
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.33 E-value=1.5e-06 Score=83.28 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhccc----------------------------------
Q 020106 23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQL---------------------------------- 68 (331)
Q Consensus 23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L---------------------------------- 68 (331)
+.||..|...++.++.+||..+|..||..|+|++...++. |...+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~-Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE-YNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH-HHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH-HHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999988866632 21211
Q ss_pred -----------------CCCCCCCCCCHHHHHHHHHHHHHhCC----hhHHHhh------------cCCCCCHHHHHHHH
Q 020106 69 -----------------DPRINRRPFTEDEEERLLAAHRIHGN----KWALIAR------------LFPGRTDNAVKNHW 115 (331)
Q Consensus 69 -----------------~p~i~kg~WT~EED~~Llelv~~~G~----kWs~IAk------------~LpgRT~nq~KnRW 115 (331)
.+..+...||+|||..|+-++.+||- .|..|.. ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 12234568999999999999999995 6999962 45679999999999
Q ss_pred HHHHHHHHHhhh
Q 020106 116 HVIMARKQREQS 127 (331)
Q Consensus 116 ~~ilkrk~~~~~ 127 (331)
+.+++-..++..
T Consensus 270 ~tLi~~iekE~~ 281 (304)
T 1ofc_X 270 NTLITLIERENI 281 (304)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999987666644
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.23 E-value=1.3e-06 Score=70.02 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 020106 76 PFTEDEEERLLAAHRIHGN---KWALIARLFPGRTDNAVKNHWHVIMARKQRE 125 (331)
Q Consensus 76 ~WT~EED~~Llelv~~~G~---kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~~ 125 (331)
-||.|||+.||..+++.|. .|+.||+.|.+|+.+||++||..+|+--...
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999986 7999999999999999999999999865543
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.8e-06 Score=62.14 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCChhHHHhh-cCCCCCHHHHHHHHHH
Q 020106 70 PRINRRPFTEDEEERLLAAHRIHGNKWALIAR-LFPGRTDNAVKNHWHV 117 (331)
Q Consensus 70 p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk-~LpgRT~nq~KnRW~~ 117 (331)
|.+...+||+||-++..+++.+||.+|..|++ .||+||..+|...|-.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 66778999999999999999999999999999 5999999999988853
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.37 E-value=4e-07 Score=69.39 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 76 PFTEDEEERLLAAHRIHGN---KWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 76 ~WT~EED~~Llelv~~~G~---kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
-||.|||+.|+..+++.|. .|+.||+.| +|+++||++||..+++--
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 6999999999999999997 799999999 999999999999988643
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.02 E-value=1.1e-05 Score=64.94 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=52.5
Q ss_pred hhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCC-----CCCHHHHHHHHHHHHHHHHHhhh
Q 020106 62 LRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFP-----GRTDNAVKNHWHVIMARKQREQS 127 (331)
Q Consensus 62 ~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs~IAk~Lp-----gRT~nq~KnRW~~ilkrk~~~~~ 127 (331)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++..+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45556665 3689999999999999999999999998764 79999999999999888776543
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=6.9e-06 Score=61.26 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCCccccchhhhc
Q 020106 15 SSTSTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAE-KLQGRSGKSCRLRWFN 66 (331)
Q Consensus 15 s~~p~~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lpgRt~kQCr~Rw~n 66 (331)
+..|.+....||+||-++..+++.+||. +|..||+ .|++|+..+|.+-|..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3457788889999999999999999995 7999999 5899999999987743
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.96 E-value=1.6e-06 Score=67.12 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----hhHHHhhcCCCCCHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGN----KWALIARLFPGRTDNAVKNHWH 116 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~----kWs~IAk~LpgRT~nq~KnRW~ 116 (331)
..+||.||+++|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 6999999999999999999884
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=9.2e-07 Score=68.40 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=39.1
Q ss_pred CCCCCCCCC-CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhcCCCccccchhhh
Q 020106 13 TKSSTSTCP-RGHWRPAEDEKLRQLVEQYGAQ---NWNSIAEKLQGRSGKSCRLRWF 65 (331)
Q Consensus 13 ~ks~~p~~k-KG~WT~EED~~L~~lV~kyG~~---nW~~IA~~lpgRt~kQCr~Rw~ 65 (331)
++.+..+.. ...||.+|+++|..++.+|+.. .|.+||+.||||+..+|+.+|.
T Consensus 10 ~~~m~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 10 GSHMASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ------------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 333433333 4579999999999999999753 6999999999999999999994
No 79
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.70 E-value=9.5e-06 Score=65.38 Aligned_cols=47 Identities=19% Similarity=0.406 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh-----cCCCccccchhhhcccC
Q 020106 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKL-----QGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~l-----pgRt~kQCr~Rw~n~L~ 69 (331)
...||.||++.|.+|+++|+. .|..|+..+ ++|+..++++||..+.+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999997 599999999 47999999999987654
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=0.00011 Score=55.88 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHhh-cCCCCCHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGNKWALIAR-LFPGRTDNAVKNHWHV 117 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~kWs~IAk-~LpgRT~nq~KnRW~~ 117 (331)
..+||+||-.+..+++.+||.+|..|++ .||+||..+|...|-.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999998863
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=8.6e-05 Score=59.58 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHV 117 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ 117 (331)
...||+||.++..++...||.+|..||..||+||..+|-.+|-.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988753
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.49 E-value=8.1e-05 Score=75.23 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc
Q 020106 20 CPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ 67 (331)
Q Consensus 20 ~kKG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~ 67 (331)
....+||.||-.++++++.+||. +|..||++|++|+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34679999999999999999995 899999999999999999998764
No 83
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.43 E-value=0.00076 Score=60.02 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCCHHHHHHH--hcCCCccccch-------hhhc--------------------
Q 020106 18 STCPRGHWRPAEDEKLRQLVEQYG--AQNWNSIAEK--LQGRSGKSCRL-------RWFN-------------------- 66 (331)
Q Consensus 18 p~~kKG~WT~EED~~L~~lV~kyG--~~nW~~IA~~--lpgRt~kQCr~-------Rw~n-------------------- 66 (331)
|.-....||..|-..|+.++.+|| ...|..|++. |.+++...+.. +...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 344567899999999999999999 5679999875 45555533321 0000
Q ss_pred ------------------------cc---------------C-----CCCCCCCCCHHHHHHHHHHHHHhC-ChhHHHhh
Q 020106 67 ------------------------QL---------------D-----PRINRRPFTEDEEERLLAAHRIHG-NKWALIAR 101 (331)
Q Consensus 67 ------------------------~L---------------~-----p~i~kg~WT~EED~~Llelv~~~G-~kWs~IAk 101 (331)
.| - +......||++||..|+..+.+|| ++|.+|-.
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 00 0 001123599999999999999999 88999975
Q ss_pred --cC--C--------C--CCHHHHHHHHHHHHHHHHH
Q 020106 102 --LF--P--------G--RTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 102 --~L--p--------g--RT~nq~KnRW~~ilkrk~~ 124 (331)
.| . . ++..++..|-..+|+--.+
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~~ 199 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSR 199 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHHHHH
Confidence 22 1 2 4566899998888775443
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.39 E-value=9.7e-05 Score=59.26 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhc
Q 020106 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFN 66 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n 66 (331)
...||+||.+++.++..+|| ++|..||+.|++|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999 579999999999999999987743
No 85
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.33 E-value=0.0006 Score=66.95 Aligned_cols=104 Identities=21% Similarity=0.400 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-CCCccccchhhhccc---------------------------------
Q 020106 23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQL--------------------------------- 68 (331)
Q Consensus 23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-gRt~kQCr~Rw~n~L--------------------------------- 68 (331)
+.||.-|=..++.++.+||..+-..||..|. +++...++ +|.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999997 77776554 222222
Q ss_pred ---------CC---------C--CCCCCCCHHHHHHHHHHHHHhC----ChhHHHhh------------cCCCCCHHHHH
Q 020106 69 ---------DP---------R--INRRPFTEDEEERLLAAHRIHG----NKWALIAR------------LFPGRTDNAVK 112 (331)
Q Consensus 69 ---------~p---------~--i~kg~WT~EED~~Llelv~~~G----~kWs~IAk------------~LpgRT~nq~K 112 (331)
+| . .+...||+|||..||-++.+|| +.|..|-. ++..||+.+|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 11 1 1355799999999999999999 45999843 25679999999
Q ss_pred HHHHHHHHHHHHhhh
Q 020106 113 NHWHVIMARKQREQS 127 (331)
Q Consensus 113 nRW~~ilkrk~~~~~ 127 (331)
.|-+.|++-..++..
T Consensus 283 rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 283 RRGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999987766644
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.27 E-value=0.00029 Score=53.49 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCCccccchhhhc
Q 020106 21 PRGHWRPAEDEKLRQLVEQYGAQNWNSIAE-KLQGRSGKSCRLRWFN 66 (331)
Q Consensus 21 kKG~WT~EED~~L~~lV~kyG~~nW~~IA~-~lpgRt~kQCr~Rw~n 66 (331)
....||+||-.+..+++.+||. +|..|++ .|++|+..+|.+-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4568999999999999999995 7999999 5999999999887753
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.26 E-value=0.00024 Score=55.28 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------hhHHHhhcCC----CCCHHHHHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGN----------KWALIARLFP----GRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~----------kWs~IAk~Lp----gRT~nq~KnRW~~ilkrk~ 123 (331)
...||.+|..+||++...+.. .|..||..|. .||+.||+++|..|.+.-+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999976432 4999998763 6999999999999887654
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.95 E-value=0.00031 Score=54.67 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC------C---CHHHHHHHhc----CCCccccchhhhcccC
Q 020106 21 PRGHWRPAEDEKLRQLVEQYGA------Q---NWNSIAEKLQ----GRSGKSCRLRWFNQLD 69 (331)
Q Consensus 21 kKG~WT~EED~~L~~lV~kyG~------~---nW~~IA~~lp----gRt~kQCr~Rw~n~L~ 69 (331)
+...||.+|-..|+++...... . -|..||..|. .|++.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999975321 1 3999999983 6999999999988653
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.99 E-value=0.00013 Score=55.65 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhcCCCccccchhhhcccC
Q 020106 24 HWRPAEDEKLRQLVEQYGA--QNWNSIAEKLQGRSGKSCRLRWFNQLD 69 (331)
Q Consensus 24 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lpgRt~kQCr~Rw~n~L~ 69 (331)
.||.|||..|+..+++-|+ .-|..||+.+ +|+..|+.+||+.++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999987 2499999999 9999999999988665
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.91 E-value=0.00051 Score=55.13 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhcCCCccccchhhhccc
Q 020106 24 HWRPAEDEKLRQLVEQYGA--QNWNSIAEKLQGRSGKSCRLRWFNQL 68 (331)
Q Consensus 24 ~WT~EED~~L~~lV~kyG~--~nW~~IA~~lpgRt~kQCr~Rw~n~L 68 (331)
.||.|||..|+...++.|. +.|..||+.|.+|+..|+.+|++.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5999999999999999986 35999999999999999999997744
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.43 E-value=0.012 Score=47.32 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhc-----CCCccccchhhhcccC
Q 020106 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-----GRSGKSCRLRWFNQLD 69 (331)
Q Consensus 22 KG~WT~EED~~L~~lV~kyG~~nW~~IA~~lp-----gRt~kQCr~Rw~n~L~ 69 (331)
...||.||.+.|.+|+++|.. .|-.|+.... .|+..+.++||..+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999997 5999999873 6999999999977643
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.03 E-value=0.037 Score=41.54 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHh--cCCCccccchhhhcc
Q 020106 18 STCPRGHWRPAEDEKLRQLVEQYGAQN--WNSIAEKL--QGRSGKSCRLRWFNQ 67 (331)
Q Consensus 18 p~~kKG~WT~EED~~L~~lV~kyG~~n--W~~IA~~l--pgRt~kQCr~Rw~n~ 67 (331)
+..++-.||+|.-++.+++|++.|... ++.|.+.| +|.|..++..|...|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999532 89999998 578888887665443
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.30 E-value=0.071 Score=50.99 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-hhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGN-KWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~-kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
.+.||..|...++.++.+||. .|..||..|+|+|..+|+.++....++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 467999999999999999995 6999999999999999998888777654
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.09 E-value=0.15 Score=38.21 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCh---hHHHhhcC--CCCCHHHHHHHHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHGNK---WALIARLF--PGRTDNAVKNHWHVIM 119 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G~k---Ws~IAk~L--pgRT~nq~KnRW~~il 119 (331)
..+-.||+|..+..++++.++|.. |..|.+.| +|.|..+|+.|...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999965 67888874 5889999999876543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.67 E-value=0.093 Score=46.40 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---ChhHHHhh--cCCCCCHHHHHHHHHHHHHHHHH
Q 020106 71 RINRRPFTEDEEERLLAAHRIHG---NKWALIAR--LFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 71 ~i~kg~WT~EED~~Llelv~~~G---~kWs~IAk--~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
.-....||+.|-..|++++.+|| .+|..|++ .|.+||..+|+..+..++.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999 57999986 48899999999998888876544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.34 E-value=0.2 Score=47.09 Aligned_cols=29 Identities=38% Similarity=0.692 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020106 23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEK 51 (331)
Q Consensus 23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~ 51 (331)
..|+.+||..|+..|.+||.++|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999764
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.77 E-value=2 Score=40.22 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC---ChhHHHhh--cCCCCCHHHHHHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHG---NKWALIAR--LFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G---~kWs~IAk--~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
+++||+-|-+.|++++.+|| .+|..|+. .|+.++...++.-++.++...+.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~ 58 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKD 58 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999975 58999999999999988865443
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=69.13 E-value=5.7 Score=27.74 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+.+..++.++...|..+.+||..| |-+...|+++....+++-.
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 555666777777889999999999 8899999998877665443
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.25 E-value=7 Score=28.14 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHH----hCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRI----HGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~----~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+.+..++.+.-- .|..|.+||..| |-+...|+.+....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 445556666554 578899999999 9999999998877766544
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=65.28 E-value=10 Score=37.13 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCh-hHHHhhcCC-CCCHHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHVIMA 120 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~k-Ws~IAk~Lp-gRT~nq~KnRW~~ilk 120 (331)
.+.||.-|=..++.++.+||.. -..||..|. |+|..+|+.+.....+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4579999999999999999954 899999998 9999999976665443
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.61 E-value=7.1 Score=27.69 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH----HhCChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHR----IHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 80 EED~~Llelv~----~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
+.+..++.+.- ..|..+.+||+.| |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44555555554 3478899999999 999999999888776554
No 102
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=60.95 E-value=4.7 Score=31.80 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC-------CCCCCCCHHHHHHHHH
Q 020106 30 DEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR-------INRRPFTEDEEERLLA 87 (331)
Q Consensus 30 D~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~-------i~kg~WT~EED~~Lle 87 (331)
+.+|.++|+.|| |...++.+.-||= ..+|. +.+.+|-.+..+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF---------~~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCF---------KKDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSST---------TSSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccC---------CCCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 578999999999 9999999864443 22343 3467888888776643
No 103
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=58.77 E-value=12 Score=32.71 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCCCCCCCCCHHHHHHHH--------HHHHHhCCCCHHHHHHH
Q 020106 17 TSTCPRGHWRPAEDEKLR--------QLVEQYGAQNWNSIAEK 51 (331)
Q Consensus 17 ~p~~kKG~WT~EED~~L~--------~lV~kyG~~nW~~IA~~ 51 (331)
.|.-.+|-||+|+|+.|. +++++|| |..|...
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~R 148 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEMR 148 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence 356778999999998874 6778887 6666554
No 104
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.45 E-value=15 Score=27.61 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 80 EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
+.+..++.++...|..-.+||+.| |-+...|+.+....+++-+.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 455667777777788899999999 89999999998877665443
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.47 E-value=9.1 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------hhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 84 RLLAAHRIHGN--------KWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 84 ~Llelv~~~G~--------kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
.|..+|...|+ +|.+||..|.--....+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 48888888873 699999987555578999999887743
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=51.81 E-value=21 Score=28.07 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCCCC----HHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPGRT----DNAVKNHWHVIMAR 121 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~LpgRT----~nq~KnRW~~ilkr 121 (331)
-.|..+|.+.| +.|.+||+.|.--. ...+|..|..+|-.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 35777777777 46999999884433 46788888877754
No 107
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.83 E-value=26 Score=28.73 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=25.9
Q ss_pred hCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106 92 HGNKWALIARLFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 92 ~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
.|-...+||+.| |-+...|+++....+++-+.
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 466789999999 89999999998877665443
No 108
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=47.50 E-value=18 Score=29.59 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=25.5
Q ss_pred hCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 92 HGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 92 ~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
.|-...+||+.| |-+...|+++....+++-+
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 467789999999 8899999999887766543
No 109
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.58 E-value=19 Score=29.16 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCCCC----HHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPGRT----DNAVKNHWHVIMAR 121 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~LpgRT----~nq~KnRW~~ilkr 121 (331)
-+|..+|...| ++|.+||+.|.--. ...+|..|..+|-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35778888887 36999999874432 56789999877754
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.40 E-value=33 Score=24.32 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 77 FTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 77 WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
+|+.| ..++.++ ..|....+||..| |-+...|+.+...++++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444 4445555 6678899999999 88999999988776554
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=45.51 E-value=13 Score=30.64 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=30.4
Q ss_pred HHHHHHHHhC--------ChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 84 RLLAAHRIHG--------NKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 84 ~Llelv~~~G--------~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
.|..+|.+.| ++|.+||+.|.--....+|..|..+|-.--
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 3777777776 369999998755558999999998886544
No 112
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.00 E-value=24 Score=28.72 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------ChhHHHhhcCCCCC----HHHHHHHHHHHHHHH
Q 020106 84 RLLAAHRIHG--------NKWALIARLFPGRT----DNAVKNHWHVIMARK 122 (331)
Q Consensus 84 ~Llelv~~~G--------~kWs~IAk~LpgRT----~nq~KnRW~~ilkrk 122 (331)
+|..+|.+.| ++|.+||+.|.--. ...+|..|..+|-.-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4777788877 36999999874422 357888888877644
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=44.07 E-value=24 Score=28.77 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCCCC----HHHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPGRT----DNAVKNHWHVIMARK 122 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~LpgRT----~nq~KnRW~~ilkrk 122 (331)
-+|..+|..+| ++|.+||..|.--+ ...+|..|..+|..-
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34777788877 36999999874433 457888888777644
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.73 E-value=39 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 82 D~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
+..++.+ ...|..-.+||..| |-+...|+.+...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4456666 46687889999999 889999999888776543
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.50 E-value=27 Score=26.00 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH----hCChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRI----HGNKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 80 EED~~Llelv~~----~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
+.+..++.+.-- .|..+.+||..| |-+...|+.+-...+++-
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345556666554 567899999999 999999999877666544
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.73 E-value=37 Score=25.72 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 76 PFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 76 ~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
..|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+...++++-
T Consensus 27 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLL-GLL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHH-HHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4566555544 445 7788899999999 889999999887766543
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.04 E-value=49 Score=25.07 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 73 NRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 73 ~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567777776655443 788899999999 89999999998887654
No 118
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=40.09 E-value=19 Score=30.41 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHH
Q 020106 45 WNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLA 87 (331)
Q Consensus 45 W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Lle 87 (331)
-..||.++.|++..+||..+ + + ...||+||++.|.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f-~-----I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTF-N-----I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHT-T-----C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc-C-----C-CCCCCHHHHHHHHH
Confidence 56789999999999999866 2 2 33599999988654
No 119
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=39.64 E-value=41 Score=28.29 Aligned_cols=38 Identities=8% Similarity=-0.001 Sum_probs=28.2
Q ss_pred HHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 85 LLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 85 Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
++.++-..|....+||+.| |-+...|+.+....+++-+
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3333334567799999999 8999999998877666544
No 120
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.62 E-value=37 Score=25.00 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 76 PFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 76 ~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
..|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+...++++
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4566665544 444 5788899999999 89999999988766554
No 121
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.33 E-value=50 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=25.6
Q ss_pred hCChhHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q 020106 92 HGNKWALIARLFPGRTDNAVKNHWHVIMARKQR 124 (331)
Q Consensus 92 ~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~~ 124 (331)
.|-...+||+.| |-+...|+++....+++-+.
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 456789999999 89999999998877665443
No 122
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.57 E-value=42 Score=23.31 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
..+|+.|-+.|.- + ..|....+||+.| |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567766665544 4 5677899999999 88999999988776554
No 123
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.45 E-value=12 Score=30.30 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCHHHHHHHhcCCCccccchhhhcccCC
Q 020106 32 KLRQLVEQYGA-------QNWNSIAEKLQGRSGKSCRLRWFNQLDP 70 (331)
Q Consensus 32 ~L~~lV~kyG~-------~nW~~IA~~lpgRt~kQCr~Rw~n~L~p 70 (331)
+|..+|.+.|- +.|..||..|.--.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57777776652 2599999999433377888888888875
No 124
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=37.75 E-value=14 Score=30.37 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred CHHHHHHHh--cCC---CccccchhhhcccCCCCCCCCCCHHHHHHHHHHHH
Q 020106 44 NWNSIAEKL--QGR---SGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHR 90 (331)
Q Consensus 44 nW~~IA~~l--pgR---t~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~ 90 (331)
.|..||..| |.- .....+..|.++|.|- ...+++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 499999998 221 1346788899988863 3477888888877654
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.24 E-value=55 Score=25.79 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+.+..++.++...|-...+||..| |-+...|+.+....+++-.
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 445566777767788899999999 8999999998877665443
No 126
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=36.83 E-value=74 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=18.5
Q ss_pred cchhhhcccC-CCCCCCCCCHHHHHHHH
Q 020106 60 CRLRWFNQLD-PRINRRPFTEDEEERLL 86 (331)
Q Consensus 60 Cr~Rw~n~L~-p~i~kg~WT~EED~~Ll 86 (331)
+-+.|..-.. |....|-||+|+|+.|.
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 3344444333 45678999999999876
No 127
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=35.51 E-value=22 Score=30.37 Aligned_cols=41 Identities=37% Similarity=0.597 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCChhH
Q 020106 45 WNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWA 97 (331)
Q Consensus 45 W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Llelv~~~G~kWs 97 (331)
...||.++.|+++.++|..+ + + ...||+||++.|.+ .+.|+
T Consensus 126 c~~vA~~ikgktpeeiR~~f-~-----I-~nd~t~eEe~~ir~-----en~W~ 166 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTF-N-----I-VNDFTPEEEAAIRR-----ENEWA 166 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-T-----C-CCCCCHHHHHHHHT-----TC---
T ss_pred HHHHHHHHcCCCHHHHHHHc-C-----C-CCCCCHHHHHHHHH-----hcccc
Confidence 68899999999999999866 2 2 23599999998643 45665
No 128
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.86 E-value=19 Score=29.89 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCCC
Q 020106 28 AEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPR 71 (331)
Q Consensus 28 EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p~ 71 (331)
+-|.+|+.+.++.|...|.+||+.+ |-+...|+.|+.++....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 4578889999988888999999998 788999998887765433
No 129
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=34.85 E-value=16 Score=28.23 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=25.2
Q ss_pred HHHHHHHHhC--------ChhHHHhhcCCCCC----HHHHHHHHHHHHH
Q 020106 84 RLLAAHRIHG--------NKWALIARLFPGRT----DNAVKNHWHVIMA 120 (331)
Q Consensus 84 ~Llelv~~~G--------~kWs~IAk~LpgRT----~nq~KnRW~~ilk 120 (331)
.|..+|...| ++|.+||+.|.--. ..++|+.|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 3777777776 46999999874322 4577887766543
No 130
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.51 E-value=45 Score=24.81 Aligned_cols=42 Identities=31% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHH
Q 020106 77 FTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMAR 121 (331)
Q Consensus 77 WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkr 121 (331)
.|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+...++++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555544 444 6788889999999 88999999988766554
No 131
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=33.53 E-value=41 Score=28.17 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=28.6
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCCC-----CHHHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPGR-----TDNAVKNHWHVIMARK 122 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~LpgR-----T~nq~KnRW~~ilkrk 122 (331)
-.|..+|...| ++|.+||..|.-- ....+|..|..+|-.-
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 35777888887 3699999987432 2568899888776543
No 132
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.51 E-value=23 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.373 Sum_probs=27.3
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCCC-----CHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPGR-----TDNAVKNHWHVIMA 120 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~LpgR-----T~nq~KnRW~~ilk 120 (331)
-.|..+|...| +.|.+||..|.-- ...++|..|..+|.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 34777787777 4699999987421 23678999987764
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.49 E-value=55 Score=25.84 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHH
Q 020106 78 TEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKN 113 (331)
Q Consensus 78 T~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~Kn 113 (331)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667778888899999999999999 777776644
No 134
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.92 E-value=49 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHHHhC--------ChhHHHhhcCCC--C---CHHHHHHHHHHHHHHHH
Q 020106 83 ERLLAAHRIHG--------NKWALIARLFPG--R---TDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 83 ~~Llelv~~~G--------~kWs~IAk~Lpg--R---T~nq~KnRW~~ilkrk~ 123 (331)
-.|..+|..+| ++|.+||..|.- . ....+|..|..+|..--
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45778888887 469999998743 2 25788999988876543
No 135
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.30 E-value=41 Score=27.84 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+-|.+|+++.++-| -.|.+||+.+ |-+...|+.|++.+.+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888877666 4699999999 9999999999988766543
No 136
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=30.88 E-value=28 Score=29.07 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----HHHHHHHhcCCCccccchhhhcccCCCCCCCCCCHHHHHHHHH
Q 020106 25 WRPAEDEKLRQLVEQYGAQN-----WNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLA 87 (331)
Q Consensus 25 WT~EED~~L~~lV~kyG~~n-----W~~IA~~lpgRt~kQCr~Rw~n~L~p~i~kg~WT~EED~~Lle 87 (331)
.+.+.-..|+.+..-.+... -..||.++.|++..+||..+ + + ...||+||++.|.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f-~-----I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF-N-----I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHT-T-----C-CCCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHc-C-----C-CCCCCHHHHHHHHH
Confidence 34444444555444444321 46788899999999999877 2 2 24599999987654
No 137
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.82 E-value=2.1e+02 Score=22.51 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcc------cCCCCC----CCCCCHHHHHHHHHHHHHh
Q 020106 23 GHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQ------LDPRIN----RRPFTEDEEERLLAAHRIH 92 (331)
Q Consensus 23 G~WT~EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~------L~p~i~----kg~WT~EED~~Llelv~~~ 92 (331)
...+.++-..++.++. .|. ...+||+.+ |.+...+ .||.+. +.+... ....++++.+.|++++...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~l-gis~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQL-RVSHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHH-TCCHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHH-CcCHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689999988888885 463 689999998 5554443 334332 222211 2347888888888888664
Q ss_pred C-ChhHHHhhcC
Q 020106 93 G-NKWALIARLF 103 (331)
Q Consensus 93 G-~kWs~IAk~L 103 (331)
. ..-.+|+..|
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 3 1223455443
No 138
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.68 E-value=1e+02 Score=24.39 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+.+..++.++...|..-.+||..+ |-+...|+.+.....++-.
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 344566667777888999999999 9999999998877665443
No 139
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.39 E-value=1.2e+02 Score=23.31 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 74 RRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 74 kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
....|+.|-+.|. ++ ..|..-.+||+.| |-+...|+.+...++++-
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3456777776654 44 3688889999999 889999999887766543
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.08 E-value=1.1e+02 Score=24.42 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+-|..|+.+....| ..+.+||+.+ |-+...|..+.+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44567777776665 5699999999 8899999999988866543
No 141
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.48 E-value=1.2e+02 Score=18.50 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHHH
Q 020106 76 PFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHW 115 (331)
Q Consensus 76 ~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnRW 115 (331)
..++++-..++.++ .-|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 4577789999999 78888777643
No 142
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.98 E-value=71 Score=25.74 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHH
Q 020106 75 RPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVK 112 (331)
Q Consensus 75 g~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~K 112 (331)
..=|.+ .|..++...|..|..+|+.| |=+..+|.
T Consensus 20 ~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 20 SSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp SCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred CCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 334444 35556788999999999999 76666553
No 143
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.86 E-value=59 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCChhHHHhhcCCCCCHHHHHH
Q 020106 82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKN 113 (331)
Q Consensus 82 D~~Llelv~~~G~kWs~IAk~LpgRT~nq~Kn 113 (331)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3456777788999999999999 777776644
No 144
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=24.73 E-value=67 Score=26.27 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------ChhHHHhhcCCC-C----CHHHHHHHHHHHHH
Q 020106 84 RLLAAHRIHG--------NKWALIARLFPG-R----TDNAVKNHWHVIMA 120 (331)
Q Consensus 84 ~Llelv~~~G--------~kWs~IAk~Lpg-R----T~nq~KnRW~~ilk 120 (331)
+|..+|.+.| ++|.+||..|.- . ....+|.+|..+|-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 4777888887 369999998732 1 24678998887764
No 145
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.59 E-value=85 Score=21.92 Aligned_cols=33 Identities=12% Similarity=-0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHH
Q 020106 80 DEEERLLAAHRIHGNKWALIARLFPGRTDNAVKN 113 (331)
Q Consensus 80 EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~Kn 113 (331)
-|.+.|.++...+++++++.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 466788889999999999999988 655544443
No 146
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.06 E-value=1.1e+02 Score=23.01 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHHHH
Q 020106 79 EDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNH 114 (331)
Q Consensus 79 ~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~KnR 114 (331)
.-|...|.++...++++.++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3467788889999999999999999 7776666544
No 147
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.93 E-value=85 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCChhHHHhhcCCCCCHHHHHH
Q 020106 82 EERLLAAHRIHGNKWALIARLFPGRTDNAVKN 113 (331)
Q Consensus 82 D~~Llelv~~~G~kWs~IAk~LpgRT~nq~Kn 113 (331)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566678899999999999 777777654
No 148
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.84 E-value=66 Score=25.88 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHhhcCCCCCHHHHH
Q 020106 72 INRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVK 112 (331)
Q Consensus 72 i~kg~WT~EED~~Llelv~~~G~kWs~IAk~LpgRT~nq~K 112 (331)
+....=|.+ .|..++...|..|..+|+.| |=+..+|.
T Consensus 17 ~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp CTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred hhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 334444555 35555788999999999999 76666653
No 149
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.94 E-value=63 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhcCCCccccchhhhcccCC
Q 020106 28 AEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDP 70 (331)
Q Consensus 28 EED~~L~~lV~kyG~~nW~~IA~~lpgRt~kQCr~Rw~n~L~p 70 (331)
+-|.+|+.+++..+...|.+||+.+ |-+...|+.|...+...
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4566778888888888899999998 68888888888776543
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.73 E-value=1e+02 Score=25.89 Aligned_cols=43 Identities=7% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHH
Q 020106 79 EDEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARK 122 (331)
Q Consensus 79 ~EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk 122 (331)
.+-|..|+++....| ..|.+||+.+ |-+...|..|++.+.+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 355667777777766 4699999999 889999999998875543
No 151
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.02 E-value=1.3e+02 Score=24.13 Aligned_cols=43 Identities=7% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhC-ChhHHHhhcCCCCCHHHHHHHHHHHHHHHH
Q 020106 80 DEEERLLAAHRIHG-NKWALIARLFPGRTDNAVKNHWHVIMARKQ 123 (331)
Q Consensus 80 EED~~Llelv~~~G-~kWs~IAk~LpgRT~nq~KnRW~~ilkrk~ 123 (331)
+-|..|+++....| ..+.+||+.+ |-+...|..|.+.+.+...
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34566777776665 4699999999 8899999999988765443
Done!