BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020107
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + + HK + + P
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 334
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGE 358
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + H V C++ P L TGS D+ + +WD+R++
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + + HK + + P
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 328
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGE 352
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + + H V C++ P L TGS D+ + +WD+R++
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + + HK + + P
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 336
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGE 360
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + H V C++ P L TGS D+ + +WD+R++
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + + HK + + P
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPH 332
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGE 356
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + H V C++ P L TGS D+ + +WD+R++
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 113 WNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA----HEFELWATSFDVHQPHMVYTG 168
+ PS +I G D S+ + + E + K H L A SF + + T
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-TNSDMQILTA 172
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS-NTLLTGSYDEYLRVWDVRS 227
S D + WD+ +F H V C+ PS++ NT ++G D+ VWD+RS
Sbjct: 173 SGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI----HKMGVCCIASIPSDSNTLLTGS 215
H +++ +GS+DC W+I + L + I H V +A P+ N LL+
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 216 YDEYLRVWDV 225
D + VWDV
Sbjct: 152 XDNVILVWDV 161
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS--ISKPVNETSVCLGGGVWR---IKH 248
H V IA P + N + +GS D + VW++ + P+ E + L G R +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295
HP ++L+A N V VG A + H Y DW R
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + HK + + P
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHTFESHKDEIFQVHWSPH 330
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGE 354
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + H V C++ P L TGS D+ + +WD+R++
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
AH E+ SF+ + ++ TGS D + WD+R KL + HK + + P
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLKLHTFESHKDEIFQVHWSPH 330
Query: 207 DSNTLLTGSYDEYLRVWDVRSISK 230
+ L + D L VWD+ I +
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGE 354
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+DD K WD R + H V C++ P L TGS D+ + +WD+R++
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI----HKMGVCCIASIPSDSNTLLTGS 215
H +++ +GS+DC W+I + L + I H V +A P+ N LL+
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 216 YDEYLRVWDV 225
D + VWDV
Sbjct: 152 CDNVILVWDV 161
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR--SISKPVNETSVCLGGGVWR---IKH 248
H V IA P + N + +GS D + VW++ + P+ E + L G R +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295
HP ++L+A N V VG A + H Y DW R
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220
+ +++ +G+ D WDI+ Q H+ V C + + N ++T S D +
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---LQFNKNFVITSSDDGTV 384
Query: 221 RVWDVRS---ISKPVNETSVCLGGGVWRIK 247
++WD+++ I V S GG VWRI+
Sbjct: 385 KLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
V +GS D WDI Q + V + + D +++G+YD ++VWD
Sbjct: 212 VVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 265
Query: 225 VRSISKPVNETSV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK 283
P ET + L G R+ F V++ + V V E + T
Sbjct: 266 ------PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV--ETGNCIHTLTG 317
Query: 284 HGSLAYGAD 292
H SL G +
Sbjct: 318 HQSLTSGME 326
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSIT-VGLSDGSVSIVSVVESQLEVL 142
F Q + +L +TG+++ C++ +P+ + G DG +SI V + + V
Sbjct: 219 FRQQGNEPSQIL-SLTGDRVP---LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV- 273
Query: 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178
KAHE E+W F P ++T S+D WD
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220
Q H+V TG D S WD+R+ ++ K H+ + + PS+ L T S D L
Sbjct: 248 QQHVVATGGQDGMLSIWDVRQGTMPVSLL--KAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 221 RVWDVRS 227
WD +
Sbjct: 306 WHWDAST 312
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP 253
++ + C+ P+ + + TG D L +WDVR + PV+ +W + HP P
Sbjct: 236 RVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLK-AHEAEMWEVHFHPSNP 293
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 136
Query: 223 WDVRS 227
WDV++
Sbjct: 137 WDVKT 141
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 26 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 78
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 135
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 136 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 155
Query: 223 WDVRS 227
WDV++
Sbjct: 156 WDVKT 160
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 45 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 97
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 98 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 154
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 155 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 202
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 89 DADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148
+AD G + + E S+ ++W+ + ++VGL +G V I V ESQ + L+ H
Sbjct: 119 NADSGSVSAL-AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV-ESQTK-LRTMAGH 175
Query: 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208
+ + S++ H ++ +GS D+R + ++ H VC +A SD
Sbjct: 176 QARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLA-WRSDG 229
Query: 209 NTLLTGSYDEYLRVWDVRS 227
L +G D +++WD RS
Sbjct: 230 LQLASGGNDNVVQIWDARS 248
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 157
Query: 223 WDVRS 227
WDV++
Sbjct: 158 WDVKT 162
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 26/201 (12%)
Query: 39 KPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQADAD----- 91
+P+ + S + + N L + + T + +K+SP G +LA + AD
Sbjct: 18 QPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKI 73
Query: 92 -----GGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK 146
G + I+G K+ S + W+ + + D ++ I V S + L+ K
Sbjct: 74 WGAYDGKFEKTISGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLK 128
Query: 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
H ++ +F+ Q +++ +GS D WD++ + H V +
Sbjct: 129 GHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAV-HFNR 183
Query: 207 DSNTLLTGSYDEYLRVWDVRS 227
D + +++ SYD R+WD S
Sbjct: 184 DGSLIVSSSYDGLCRIWDTAS 204
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 136
Query: 223 WDVRS 227
WDV++
Sbjct: 137 WDVKT 141
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 26 TKAVSSVKFSP----NGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 78
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 135
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 136 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 136
Query: 223 WDVRS 227
WDV++
Sbjct: 137 WDVKT 141
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 26 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 78
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 79 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 135
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 136 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 183
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 132
Query: 223 WDVRS 227
WDV++
Sbjct: 133 WDVKT 137
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 22 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 74
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 75 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 131
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 132 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 179
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 138
Query: 223 WDVRS 227
WDV++
Sbjct: 139 WDVKT 143
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 28 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 80
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 81 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 137
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 138 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 223 WDVRS 227
WDV++
Sbjct: 140 WDVKT 144
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 24/180 (13%)
Query: 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSM 107
L+ T + +K+SP G +LA + AD G + I+G K+ S
Sbjct: 21 LKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT 167
+ W+ + + D ++ I V S + L+ K H ++ +F+ Q +++ +
Sbjct: 77 ---VAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 168 GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
GS D WD++ + H V + D + +++ SYD R+WD S
Sbjct: 131 GSFDESVRIWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 139
Query: 223 WDVRS 227
WDV++
Sbjct: 140 WDVKT 144
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 24/180 (13%)
Query: 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSM 107
L+ T + +K+SP G +LA + AD G + I+G K+ S
Sbjct: 21 LKFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT 167
+ W+ + + D ++ I V S + L+ K H ++ +F+ Q +++ +
Sbjct: 77 ---VAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 168 GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
GS D WD++ + H V + D + +++ SYD R+WD S
Sbjct: 131 GSFDESVRIWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 139
Query: 223 WDVRS 227
WDV++
Sbjct: 140 WDVKT 144
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 29 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 81
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 82 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 138
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 139 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 186
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 150
Query: 223 WDVRS 227
WDV++
Sbjct: 151 WDVKT 155
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 40 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 92
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 93 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 149
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 150 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 197
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 134
Query: 223 WDVRS 227
WDV++
Sbjct: 135 WDVKT 139
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 24 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 76
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 77 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 133
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 134 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 181
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 133
Query: 223 WDVRS 227
WDV++
Sbjct: 134 WDVKT 138
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 23 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 75
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 76 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 132
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 133 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 180
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 133
Query: 223 WDVRS 227
WDV++
Sbjct: 134 WDVKT 138
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 23 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 75
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 76 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 132
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 133 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 180
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 129
Query: 223 WDVRS 227
WDV++
Sbjct: 130 WDVKT 134
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 66 TAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEKISSSMCLCLEWNP 115
T + +K+SP G +LA + AD G + I+G K+ S + W+
Sbjct: 19 TKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD---VAWSS 71
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175
+ + D ++ I V S + L+ K H ++ +F+ Q +++ +GS D
Sbjct: 72 DSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVR 128
Query: 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
WD++ + H V + D + +++ SYD R+WD S
Sbjct: 129 IWDVKTGK---CLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDTAS 176
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRI 136
Query: 223 WDVRS 227
WDV++
Sbjct: 137 WDVKT 141
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 55 EKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEK 102
+ N L++ + T + +K+SP G +LA + AD G + I+G K
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162
+ S + W+ + + D ++ I V S + L+ K H ++ +F+ Q
Sbjct: 69 LGISD---VAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQS 122
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ +GS D WD++ + + H V + D + +++ SYD R+
Sbjct: 123 NLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRI 178
Query: 223 WDVRS 227
WD S
Sbjct: 179 WDTAS 183
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ + SDD WD+ + K H V C P SN +++GS+DE +R+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGK---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 136
Query: 223 WDVRS 227
WDV++
Sbjct: 137 WDVKT 141
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 55 EKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQADAD----------GGLLRDITGEK 102
+ N L++ + T + +K+SP G +LA + AD G + I+G K
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP----NGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162
+ S + W+ + + D ++ I V S + L+ K H ++ +F+ Q
Sbjct: 69 LGISD---VAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFN-PQS 122
Query: 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222
+++ +GS D WD++ + + H V + D + +++ SYD R+
Sbjct: 123 NLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRI 178
Query: 223 WDVRS 227
WD S
Sbjct: 179 WDTAS 183
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 69 IFDIKWSPVGGNAGPFLAQADADGGLL--RDITGEKISSSMCLC-----LEWNPSATSIT 121
++ + W+P ++ A DG L+ +T +K + C + P+ S+
Sbjct: 69 VYSLDWTP----EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124
Query: 122 VGLSDGSVSIVSVV-----ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176
G D + SI ++ + + V + H+ + + Q + TGS D
Sbjct: 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184
Query: 177 WDI----RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV 232
WD+ R S F F + H V ++ ++N ++GS D +R+WD+R S+ V
Sbjct: 185 WDVTTGQRISIFGSEFPSG--HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223
QNS H+ + C+ + SD + L TGS+D+ L++W
Sbjct: 339 LQNS--HEGRISCLG-LSSDGSALCTGSWDKNLKIW 371
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 113 WNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC 172
++P + G D + I + ++ ++ Q HE ++++ + +V +GS D
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKLV-SGSGDR 187
Query: 173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224
WD+R L + GV +A P D + GS D +RVWD
Sbjct: 188 TVRIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 167 TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
TG++D WDI + Q H+ + + PS + L++GS D +R+WD+R
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQG---HEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLR 195
Query: 227 --------SISKPVNETSVCLGGGVW 244
SI V +V G G +
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPGDGKY 221
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV-HQPHMVYTGSDDCKFSGWD 178
I V G+V + + E++ ++ ++ +E + ++ V +GS D WD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234
+ + ++ + + H V C+A+ P + L+ S D + +WD R KP ++
Sbjct: 156 LAQ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQ 207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199
E L KAHE E+ +F ++ T S D K WD + KL + + C
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIA-TCSADKKVKIWD--SATGKLVHTYDEHSEQVNC 711
Query: 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLA 258
C + S+ L TGS D +L++WD+ E + G + H F P +LA
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 259 ACMHNG 264
+C +G
Sbjct: 767 SCSADG 772
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 77/204 (37%), Gaps = 26/204 (12%)
Query: 35 QEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL 94
QEGD G + L +N +K ++ L R+ D + G +A AD L
Sbjct: 593 QEGD----TGRLYLEWIN--KKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTL 646
Query: 95 --LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA 147
+ TGEK+ LC ++ + I +D V I +L + +
Sbjct: 647 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDE 704
Query: 148 HEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRESPFK---LAFQNSKIHKMGVCCIAS 203
H ++ F H++ TGS+D WD+ + + NS H
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH-------CR 757
Query: 204 IPSDSNTLLTGSYDEYLRVWDVRS 227
D L + S D LR+WDVRS
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRS 781
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199
E L KAHE E+ +F ++ T S D K WD + KL + + C
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIA-TCSADKKVKIWD--SATGKLVHTYDEHSEQVNC 704
Query: 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLA 258
C + S+ L TGS D +L++WD+ E + G + H F P +LA
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 259 ACMHNG 264
+C +G
Sbjct: 760 SCSADG 765
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 77/204 (37%), Gaps = 26/204 (12%)
Query: 35 QEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL 94
QEGD G + L +N +K ++ L R+ D + G +A AD L
Sbjct: 586 QEGD----TGRLYLEWIN--KKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTL 639
Query: 95 --LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA 147
+ TGEK+ LC ++ + I +D V I +L + +
Sbjct: 640 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDE 697
Query: 148 HEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRESPFK---LAFQNSKIHKMGVCCIAS 203
H ++ F H++ TGS+D WD+ + + NS H
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH-------CR 750
Query: 204 IPSDSNTLLTGSYDEYLRVWDVRS 227
D L + S D LR+WDVRS
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRS 774
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP-HMVYTGSDDCKF 174
S I V G+V + ++E + ++ ++ +E + + V +G D
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234
WD+ + K ++ H V C+A+ P L+ D + +WD R KP
Sbjct: 164 KVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATR 219
Query: 235 TSVC 238
C
Sbjct: 220 IDFC 223
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 74 WSPVGGNAGPFLAQADADGGLLRDITGE-KISSSMCLCLEWNPSATSITVGLSDGSVSIV 132
W V N G D +L ++ + +SS C EWNP +SI VG DG +
Sbjct: 99 WMAVLSNNGN--VSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156
Query: 133 SV 134
S+
Sbjct: 157 SI 158
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI 179
I VG D + + + + E + ++AH + + + +P+ V +GSDD W+
Sbjct: 70 IIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNW 126
Query: 180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239
E+ + L Q + H+ V C+A P D +T +G D ++VW + S P +
Sbjct: 127 -ENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQ 183
Query: 240 GGGVWRIKHHPF 251
GV + ++P
Sbjct: 184 ERGVNYVDYYPL 195
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 15/173 (8%)
Query: 107 MCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQ----LEVLQQWKAHEFELWATSFDVHQ 161
+C+ +NP ++ G D +V + S+ +S L Q+ + + + +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP---DK 198
Query: 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221
P+M+ T SDD WD + + M A +++GS D L+
Sbjct: 199 PYMI-TASDDLTIKIWDYQTKSCVATLEG----HMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274
+W+ S + V +T W I HP +A+ NGF V+ +G ++
Sbjct: 254 IWN--SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI 179
I VG D + + + + E + ++AH + + + +P+ V +GSDD W+
Sbjct: 70 IIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWN- 125
Query: 180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239
E+ + L Q + H+ V C+A P D +T +G D ++VW + S P +
Sbjct: 126 WENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQ 183
Query: 240 GGGVWRIKHHPF 251
GV + ++P
Sbjct: 184 ERGVNYVDYYPL 195
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 15/173 (8%)
Query: 107 MCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQ----LEVLQQWKAHEFELWATSFDVHQ 161
+C+ +NP ++ G D +V + S+ +S L Q+ + + + +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP---DK 198
Query: 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221
P+M+ T SDD WD + + M A +++GS D L+
Sbjct: 199 PYMI-TASDDLTIKIWDYQTKSCVATLEG----HMSNVSFAVFHPTLPIIISGSEDGTLK 253
Query: 222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274
+W+ S + V +T W I HP +A+ NGF V+ +G ++
Sbjct: 254 IWN--SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI 179
I VG D + + + + E + ++AH + + + +P+ V +GSDD W+
Sbjct: 70 IIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNW 126
Query: 180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225
E+ + L Q + H+ V C+A P D +T +G D ++VW +
Sbjct: 127 -ENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220
+P+M+ T SDD WD + + M A +++GS D L
Sbjct: 198 KPYMI-TASDDLTIKIWDYQTKSCVATLEG----HMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 221 RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274
++W+ S + V +T W I HP +A+ NGF V+ +G ++
Sbjct: 253 KIWN--SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI 179
I VG D + + + + E + ++AH + + + +P+ V +GSDD W+
Sbjct: 70 IIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNW 126
Query: 180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225
E+ + L Q + H+ V C+A P D +T +G D ++VW +
Sbjct: 127 -ENNWALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220
+P+M+ T SDD WD + + M A +++GS D L
Sbjct: 198 KPYMI-TASDDLTIKIWDYQTKSCVATLEG----HMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 221 RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274
++W+ S + V +T W I HP +A+ NGF V+ +G ++
Sbjct: 253 KIWN--SSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223
+ ++ D + WD+ FQ H G CI I +D L TG D +R W
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCI-DISNDGTKLWTGGLDNTVRSW 210
Query: 224 DVR 226
D+R
Sbjct: 211 DLR 213
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199
E+ ++ K H+ ++ F+ ++ T S D WD+R K ++ H+ V
Sbjct: 195 EIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 253
Query: 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231
P+DS LLT +RV+ SKP
Sbjct: 254 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 285
>pdb|2XSP|A Chain A, Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|A Chain A, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|B Chain B, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
Length = 440
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 48 LFNVNAEEKNLELLYRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLR---DITGEK 102
++ ++A++ N E+ + FD+ S P G N + + DADGGL R + G K
Sbjct: 109 VYLMSADDTNYEIFKLKNQEFAFDVDMSNLPCGLNGALYFVEMDADGGLSRFPNNKAGSK 168
Query: 103 ISSSMC 108
+ C
Sbjct: 169 YGTGYC 174
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199
E+ ++ K H+ ++ F+ ++ T S D WD+R K ++ H+ V
Sbjct: 196 EIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 254
Query: 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231
P+DS LLT +RV+ SKP
Sbjct: 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 23/151 (15%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199
++L +W+ + T+ + P FSG+D + PF N +
Sbjct: 105 DILYRWRVGDLHXIPTAIVSNHPRET--------FSGFDFGDIPFYHFPVNKDTRRQQEA 156
Query: 200 CIASIPSDSNT--LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257
I ++ + ++T ++ Y + L +E S L G I HH F+PG
Sbjct: 157 AITALIAQTHTDLVVLARYXQILS-----------DEXSARLAGRCINI-HHSFLPGFKG 204
Query: 258 AACMHNGFAV-VKVGGEKAEVLETYAKHGSL 287
A H F VK+ G A + + G +
Sbjct: 205 AKPYHQAFDRGVKLIGATAHYVTSALDEGPI 235
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 94 LLRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVES 137
LL+D G M + ++WNP+ S + V L+DGS++++ V E+
Sbjct: 144 LLKDAGG------MVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 94 LLRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVES 137
LL+D G M + ++WNP+ S + V L+DGS++++ V E+
Sbjct: 144 LLKDAGG------MVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 94 LLRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVES 137
LL+D G M + ++WNP+ S + V L+DGS++++ V E+
Sbjct: 144 LLKDAGG------MVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV- 198
E L + KAHE E+ +F + T S D K W+ + H V
Sbjct: 654 EKLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWNSMTGELVHTYDE---HSEQVN 709
Query: 199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVL 257
CC + S L TGS D +L++WD+ E + G + H F P +L
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 258 AACMHNG 264
A+C +G
Sbjct: 765 ASCSADG 771
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 77
Query: 209 NTLLTGSYDEYLRVWDVRS 227
L+ S+D+ LR+WDV +
Sbjct: 78 AYALSASWDKTLRLWDVAT 96
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 77
Query: 209 NTLLTGSYDEYLRVWDV 225
L+ S+D+ LR+WDV
Sbjct: 78 AYALSASWDKTLRLWDV 94
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 77
Query: 209 NTLLTGSYDEYLRVWDV 225
L+ S+D+ LR+WDV
Sbjct: 78 AYALSASWDKTLRLWDV 94
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 77
Query: 209 NTLLTGSYDEYLRVWDV 225
L+ S+D+ LR+WDV
Sbjct: 78 AYALSASWDKTLRLWDV 94
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 77
Query: 209 NTLLTGSYDEYLRVWDV 225
L+ S+D+ LR+WDV
Sbjct: 78 AYALSASWDKTLRLWDV 94
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 153 WATSFDVH--QPHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDS 208
W TS QP+++ + S D W + + F + ++ K H + ++ +D
Sbjct: 13 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-IVQDCTLTADG 71
Query: 209 NTLLTGSYDEYLRVWDV 225
L+ S+D+ LR+WDV
Sbjct: 72 AYALSASWDKTLRLWDV 88
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 67 AGIFDIKWSPVGGNAGPFLAQADADGGLL-------RDITGEKISSSMCLCLEWNPSATS 119
A I+ + W G L A DG L+ + + SS + + PS
Sbjct: 56 AKIYAMHW----GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 120 ITVGLSDGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177
+ G D SI + E + V ++ H L F + + T S D + W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALW 169
Query: 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
DI F M + S+ D+ ++G+ D ++WDVR
Sbjct: 170 DIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASAKLWDVR 214
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 67 AGIFDIKWSPVGGNAGPFLAQADADGGLL-------RDITGEKISSSMCLCLEWNPSATS 119
A I+ + W G L A DG L+ + + SS + + PS
Sbjct: 56 AKIYAMHW----GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 120 ITVGLSDGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177
+ G D SI + E + V ++ H L F + + T S D + W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALW 169
Query: 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
DI F M + S+ D+ ++G+ D ++WDVR
Sbjct: 170 DIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASAKLWDVR 214
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 67 AGIFDIKWSPVGGNAGPFLAQADADGGLL-------RDITGEKISSSMCLCLEWNPSATS 119
A I+ + W G L A DG L+ + + SS + + PS
Sbjct: 67 AKIYAMHW----GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 122
Query: 120 ITVGLSDGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177
+ G D SI + E + V ++ H L F + + T S D + W
Sbjct: 123 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALW 180
Query: 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
DI F M + S+ D+ ++G+ D ++WDVR
Sbjct: 181 DIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASAKLWDVR 225
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219
++ +V +GS D WDI + H+ V CI D+ +++G+YD
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF---DNKRIVSGAYDGK 357
Query: 220 LRVWDVRSISKPVNET-SVCL------GGGVWRIKHHPF 251
++VWD+ + P ++CL G V+R++ F
Sbjct: 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 396
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYD 217
QP Y S GWD R + FQ K H+ V + SI + + TG D
Sbjct: 181 QPFAPYFAS-----VGWDGRLKVWNTNFQIRYTFKAHESNVNHL-SISPNGKYIATGGKD 234
Query: 218 EYLRVWDVRSISKPVNE 234
+ L +WD+ +++ P E
Sbjct: 235 KKLLIWDILNLTYPQRE 251
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 67 AGIFDIKWSPVGGNAGPFLAQADADGGLL-------RDITGEKISSSMCLCLEWNPSATS 119
A I+ + W G L A DG L+ + + SS + + PS
Sbjct: 56 AKIYAMHW----GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 120 ITVGLSDGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177
+ G D SI + E + V ++ H L F + + T S D + W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALW 169
Query: 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
DI F M + S+ D+ ++G+ D ++WDVR
Sbjct: 170 DIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASAKLWDVR 214
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 19/169 (11%)
Query: 67 AGIFDIKWSPVGGNAGPFLAQADADGGLL-------RDITGEKISSSMCLCLEWNPSATS 119
A I+ + W G L A DG L+ + + SS + + PS
Sbjct: 56 AKIYAMHW----GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 120 ITVGLSDGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177
+ G D SI + E + V ++ H L F + + T S D + W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALW 169
Query: 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
DI F M + S+ D+ ++G+ D ++WDVR
Sbjct: 170 DIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASAKLWDVR 214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 122 VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR- 180
V L ++ S++ Q+ + K H + + P M+ + S D W +
Sbjct: 11 VDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 70
Query: 181 -ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227
E+ + + + + H V + I SD L+GS+D LR+WD+ +
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGTLRLWDLTT 117
>pdb|1GPI|A Chain A, Cellobiohydrolase Cel7d (Cbh 58) From Phanerochaete
Chrysosporium. Catalytic Module At 1.32 Ang Resolution
pdb|1H46|X Chain X, The Catalytic Module Of Cel7d From Phanerochaete
Chrysosporium As A Chiral Selector: Structural Studies
Of Its Complex With The B-Blocker (R)-Propranolol
pdb|1Z3T|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Cellobiose
pdb|1Z3V|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Lactose
pdb|1Z3W|A Chain A, Structure Of Phanerochaete Chrysosporium Cellobiohydrolase
Cel7d (Cbh58) In Complex With Cellobioimidazole
Length = 431
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 53 AEEKNLELLYRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLR---DITGEKISSSM 107
A++ + +LL ++ FD+ S P G N +L+ DADGG+ + + G K +
Sbjct: 109 ADDTHYQLLKLLNQEFTFDVDMSNLPCGLNGALYLSAMDADGGMSKYPGNKAGAKYGTGY 168
Query: 108 C 108
C
Sbjct: 169 C 169
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 111 LEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTG 168
L++NP T+ S +G+ + + L V + +W S DV MV TG
Sbjct: 171 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS--SDTINIWFCSLDVSASSRMVVTG 228
Query: 169 SD--DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
+ + D +E N ++HK V +A P L T S D+ +++WD+R
Sbjct: 229 DNVGNVILLNMDGKE------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
Query: 227 SI 228
+
Sbjct: 283 QV 284
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 150 FELWATSFDVH-QPHMVYTGSD--DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
+W S DV MV TG + + D +E N ++HK V +A P
Sbjct: 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE------LWNLRMHKKKVTHVALNPC 261
Query: 207 DSNTLLTGSYDEYLRVWDVRSI 228
L T S D+ +++WD+R +
Sbjct: 262 CDWFLATASVDQTVKIWDLRQV 283
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 150 FELWATSFDVH-QPHMVYTGSD--DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206
+W S DV MV TG + + D +E N ++HK V +A P
Sbjct: 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE------LWNLRMHKKKVTHVALNPC 261
Query: 207 DSNTLLTGSYDEYLRVWDVRSI 228
L T S D+ +++WD+R +
Sbjct: 262 CDWFLATASVDQTVKIWDLRQV 283
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228
+H+ V + P D+ + S+D+ L+VWD ++
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243
P D N LL+ S D LR+W++++ +T V + GGV
Sbjct: 120 PRDPNLLLSVSKDHALRLWNIQT------DTLVAIFGGV 152
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243
P D N LL+ S D LR+W++++ +T V + GGV
Sbjct: 125 PRDPNLLLSVSKDHALRLWNIQT------DTLVAIFGGV 157
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243
P D N LL+ S D LR+W++++ +T V + GGV
Sbjct: 124 PRDPNLLLSVSKDHALRLWNIQT------DTLVAIFGGV 156
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243
P D N LL+ S D LR+W++++ +T V + GGV
Sbjct: 124 PRDPNLLLSVSKDHALRLWNIQT------DTLVAIFGGV 156
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 85 LAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-----QL 139
L D L D+ E + W P + + G D +VSI + ES ++
Sbjct: 38 LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM 97
Query: 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA-FQNSKIHKMGV 198
++L + HE E+ ++ + + + T S D W+ ES + + H V
Sbjct: 98 DLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 199 CCIASIPSDSNTLLTGSYDEYLRVW 223
+ PS++ L + SYD+ +R+W
Sbjct: 157 KHVIWHPSEA-LLASSSYDDTVRIW 180
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 16/147 (10%)
Query: 47 SLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGG----NAGPFLAQADADGGLLRDITGEK 102
S ++ A+E++ + + MD I + + V G N G +LA D + T E
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139
Query: 103 ISSSMCLCLE-----------WNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE 151
C+ + W+PS + D +V I + E + HE
Sbjct: 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199
Query: 152 LWATSFDVHQ-PHMVYTGSDDCKFSGW 177
+W++ FD + + +GSDD W
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243
P D N LL+ S D LR+W++++ +T V + GGV
Sbjct: 161 PRDPNLLLSVSKDHALRLWNIQT------DTLVAIFGGV 193
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 162 PHMVYTGSDDCKFSGWDIR--ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219
P M+ + S D W + E+ + + + + H V + I SD L+GS+D
Sbjct: 28 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGT 86
Query: 220 LRVWDVRS 227
LR+WD+ +
Sbjct: 87 LRLWDLTT 94
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW 244
K Q + + I + + N ++TG+ D+ +RV+D SI+K GGVW
Sbjct: 109 KFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYD--SINKKFLLQLSGHDGGVW 166
Query: 245 RIKH 248
+K+
Sbjct: 167 ALKY 170
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 141 VLQQWKAHEFELWATSFDVH----------QPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190
+L+ W +F T+ H + + V TG+DD +D F L
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSG 160
Query: 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
H GV + + L++GS D +RVWD++
Sbjct: 161 ---HDGGVWALKY--AHGGILVSGSTDRTVRVWDIK 191
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 184 FKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240
F+LA NS H V C++ P D+ L TGS D + VW+ ++KP + + G
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN---MNKPSDHPIIIKG 577
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 141 VLQQWKAHEFELWATSFDVH----------QPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190
+L+ W +F T+ H + + V TG+DD +D F L
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG 160
Query: 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226
H GV + + L++GS D +RVWD++
Sbjct: 161 ---HDGGVWALKY--AHGGILVSGSTDRTVRVWDIK 191
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW 244
K Q + + I + + N ++TG+ D+ +RV+D SI+K GGVW
Sbjct: 109 KFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYD--SINKKFLLQLSGHDGGVW 166
Query: 245 RIKH 248
+K+
Sbjct: 167 ALKY 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,646,165
Number of Sequences: 62578
Number of extensions: 438368
Number of successful extensions: 1124
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 208
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)