Query 020107
Match_columns 331
No_of_seqs 645 out of 1445
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 07:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.6E-49 5.5E-54 306.5 25.6 280 10-329 116-443 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-49 6.3E-54 309.6 23.5 278 9-324 175-459 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.7E-44 3.7E-49 279.8 24.4 284 4-323 149-479 (480)
4 KOG0286 G-protein beta subunit 100.0 5.9E-43 1.3E-47 262.2 31.0 279 5-323 48-343 (343)
5 KOG0277 Peroxisomal targeting 100.0 4.1E-43 8.8E-48 258.2 24.5 289 9-324 8-308 (311)
6 KOG0284 Polyadenylation factor 100.0 3.3E-44 7.2E-49 280.2 18.2 277 9-325 96-380 (464)
7 KOG0279 G protein beta subunit 100.0 8.9E-40 1.9E-44 243.7 29.6 281 6-326 9-314 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 8.9E-42 1.9E-46 267.7 18.5 242 63-329 172-422 (459)
9 KOG0645 WD40 repeat protein [G 100.0 5.5E-39 1.2E-43 238.5 29.6 276 11-325 16-311 (312)
10 KOG0273 Beta-transducin family 100.0 2.9E-39 6.2E-44 256.9 27.5 284 8-329 177-486 (524)
11 KOG0315 G-protein beta subunit 100.0 1.4E-38 3E-43 233.7 27.7 269 25-329 11-292 (311)
12 KOG0295 WD40 repeat-containing 100.0 6.9E-38 1.5E-42 241.6 25.2 280 8-324 104-405 (406)
13 KOG0263 Transcription initiati 100.0 2.8E-38 6E-43 266.1 24.6 261 10-297 379-697 (707)
14 KOG0264 Nucleosome remodeling 100.0 8.9E-38 1.9E-42 247.5 23.9 271 5-329 120-408 (422)
15 KOG0263 Transcription initiati 100.0 4.3E-38 9.3E-43 264.9 22.3 235 67-327 379-651 (707)
16 KOG0286 G-protein beta subunit 100.0 1.7E-36 3.7E-41 227.6 27.3 246 58-327 47-305 (343)
17 KOG0279 G protein beta subunit 100.0 1.6E-36 3.4E-41 226.4 26.6 248 57-329 6-266 (315)
18 KOG0285 Pleiotropic regulator 100.0 8.4E-38 1.8E-42 240.8 20.2 244 58-329 143-393 (460)
19 KOG0273 Beta-transducin family 100.0 3.1E-36 6.7E-41 239.8 28.2 273 10-325 236-523 (524)
20 KOG0285 Pleiotropic regulator 100.0 3.4E-36 7.3E-41 232.0 25.5 281 8-326 147-440 (460)
21 cd00200 WD40 WD40 domain, foun 100.0 6.9E-35 1.5E-39 238.1 35.1 275 8-323 8-289 (289)
22 KOG0293 WD40 repeat-containing 100.0 4.8E-36 1E-40 235.1 24.2 284 8-327 220-515 (519)
23 KOG0284 Polyadenylation factor 100.0 1.9E-37 4E-42 242.5 16.0 234 66-325 96-337 (464)
24 KOG0318 WD40 repeat stress pro 100.0 1E-34 2.2E-39 234.2 31.8 285 12-328 150-563 (603)
25 KOG0313 Microtubule binding pr 100.0 3.3E-35 7.1E-40 228.0 27.8 269 25-326 116-419 (423)
26 KOG0296 Angio-associated migra 100.0 3.8E-35 8.2E-40 226.6 28.0 279 8-325 63-398 (399)
27 KOG0265 U5 snRNP-specific prot 100.0 3.1E-35 6.7E-40 221.6 26.2 277 8-323 46-336 (338)
28 KOG0291 WD40-repeat-containing 100.0 9.9E-35 2.1E-39 243.5 31.0 281 10-330 308-617 (893)
29 KOG0315 G-protein beta subunit 100.0 7.4E-35 1.6E-39 214.2 26.4 261 9-294 40-309 (311)
30 KOG0319 WD40-repeat-containing 100.0 2.6E-35 5.6E-40 246.3 25.6 292 5-329 101-581 (775)
31 KOG0282 mRNA splicing factor [ 100.0 2.8E-36 6.1E-41 240.7 18.6 285 6-323 208-503 (503)
32 KOG0319 WD40-repeat-containing 100.0 4E-35 8.8E-40 245.1 25.9 277 11-326 325-620 (775)
33 KOG0645 WD40 repeat protein [G 100.0 4.8E-34 1E-38 212.3 28.5 243 60-326 8-262 (312)
34 KOG0266 WD40 repeat-containing 100.0 2.7E-34 5.9E-39 246.6 30.1 279 11-325 161-454 (456)
35 KOG0291 WD40-repeat-containing 100.0 6.8E-34 1.5E-38 238.5 31.3 280 11-327 147-510 (893)
36 KOG0278 Serine/threonine kinas 100.0 1.2E-35 2.6E-40 218.6 17.8 279 9-327 14-299 (334)
37 PLN00181 protein SPA1-RELATED; 100.0 2.6E-33 5.5E-38 257.5 37.6 280 9-324 483-792 (793)
38 KOG0305 Anaphase promoting com 100.0 1.8E-34 3.9E-39 238.7 26.6 273 11-326 179-462 (484)
39 KOG0318 WD40 repeat stress pro 100.0 2.5E-33 5.4E-38 226.2 31.4 287 10-330 57-355 (603)
40 KOG0265 U5 snRNP-specific prot 100.0 1.9E-34 4.2E-39 217.3 23.2 243 60-326 41-297 (338)
41 KOG0281 Beta-TrCP (transducin 100.0 1.8E-35 3.8E-40 227.5 15.0 258 25-328 208-480 (499)
42 KOG0275 Conserved WD40 repeat- 100.0 2.2E-34 4.7E-39 219.9 19.0 283 6-324 210-508 (508)
43 KOG0295 WD40 repeat-containing 100.0 4E-34 8.6E-39 220.9 20.1 248 58-329 100-368 (406)
44 KOG0643 Translation initiation 100.0 4.4E-33 9.5E-38 206.9 24.8 286 7-327 5-319 (327)
45 KOG0277 Peroxisomal targeting 100.0 1.1E-33 2.3E-38 208.7 20.3 240 69-327 11-267 (311)
46 KOG0292 Vesicle coat complex C 100.0 9.7E-34 2.1E-38 241.4 21.9 242 64-327 7-282 (1202)
47 KOG0276 Vesicle coat complex C 100.0 6.1E-33 1.3E-37 228.4 25.8 273 10-320 14-294 (794)
48 KOG0266 WD40 repeat-containing 100.0 1.8E-32 3.9E-37 235.3 29.5 240 65-328 158-412 (456)
49 PLN00181 protein SPA1-RELATED; 100.0 2.7E-32 5.9E-37 250.8 32.7 261 43-327 457-740 (793)
50 KOG0276 Vesicle coat complex C 100.0 2.5E-33 5.5E-38 230.6 22.1 243 63-329 10-261 (794)
51 KOG0316 Conserved WD40 repeat- 100.0 1.1E-32 2.3E-37 201.4 22.1 243 61-329 12-261 (307)
52 KOG0292 Vesicle coat complex C 100.0 1.8E-32 4E-37 233.7 25.7 279 10-325 10-321 (1202)
53 KOG0306 WD40-repeat-containing 100.0 5.5E-32 1.2E-36 227.0 28.0 282 6-327 367-666 (888)
54 KOG0316 Conserved WD40 repeat- 100.0 6.5E-32 1.4E-36 197.3 23.7 273 9-325 17-299 (307)
55 KOG0289 mRNA splicing factor [ 100.0 1.6E-31 3.4E-36 211.0 26.5 275 12-324 222-505 (506)
56 KOG0283 WD40 repeat-containing 100.0 4.1E-32 8.8E-37 230.8 23.8 240 61-326 262-577 (712)
57 KOG0310 Conserved WD40 repeat- 100.0 2.7E-31 5.8E-36 212.6 26.8 274 9-324 26-308 (487)
58 KOG0772 Uncharacterized conser 100.0 4.9E-32 1.1E-36 218.3 22.3 288 5-322 160-484 (641)
59 KOG0281 Beta-TrCP (transducin 100.0 2.2E-33 4.8E-38 216.0 13.5 230 66-330 197-433 (499)
60 KOG0268 Sof1-like rRNA process 100.0 6.3E-33 1.4E-37 214.3 16.0 281 7-327 61-347 (433)
61 KOG0310 Conserved WD40 repeat- 100.0 6.5E-32 1.4E-36 216.1 21.4 257 43-327 8-270 (487)
62 KOG0282 mRNA splicing factor [ 100.0 6.7E-33 1.5E-37 221.5 15.5 249 58-328 206-465 (503)
63 cd00200 WD40 WD40 domain, foun 100.0 1.1E-30 2.3E-35 213.3 29.0 240 63-328 6-252 (289)
64 KOG0640 mRNA cleavage stimulat 100.0 1.8E-31 3.9E-36 202.6 21.7 284 9-324 112-425 (430)
65 KOG0280 Uncharacterized conser 100.0 1.1E-30 2.5E-35 196.6 23.9 306 12-330 12-338 (339)
66 KOG0269 WD40 repeat-containing 100.0 3.9E-31 8.4E-36 222.6 22.4 288 5-326 35-341 (839)
67 PTZ00421 coronin; Provisional 100.0 5.4E-30 1.2E-34 219.4 28.9 209 104-329 74-294 (493)
68 KOG0300 WD40 repeat-containing 100.0 1.2E-30 2.6E-35 198.8 22.1 286 8-328 144-479 (481)
69 PTZ00421 coronin; Provisional 100.0 3E-29 6.6E-34 214.8 32.5 223 61-297 70-315 (493)
70 KOG1407 WD40 repeat protein [F 100.0 1.5E-29 3.3E-34 187.5 26.3 277 9-326 20-312 (313)
71 KOG0641 WD40 repeat protein [G 100.0 1.3E-28 2.8E-33 179.3 30.3 282 9-325 32-349 (350)
72 KOG0313 Microtubule binding pr 100.0 4.2E-30 9.1E-35 199.8 22.4 241 9-271 144-418 (423)
73 KOG0275 Conserved WD40 repeat- 100.0 4.9E-31 1.1E-35 201.6 16.6 242 64-330 211-472 (508)
74 PTZ00420 coronin; Provisional 100.0 7.2E-29 1.6E-33 213.5 31.9 240 42-297 52-318 (568)
75 KOG1007 WD repeat protein TSSC 100.0 1.4E-29 3E-34 190.4 23.8 297 8-328 10-364 (370)
76 KOG0305 Anaphase promoting com 100.0 1.2E-29 2.7E-34 210.1 24.5 235 9-273 217-463 (484)
77 KOG0264 Nucleosome remodeling 100.0 9.6E-30 2.1E-34 202.1 22.6 222 95-326 114-348 (422)
78 KOG0647 mRNA export protein (c 100.0 6.6E-29 1.4E-33 187.8 25.6 263 9-298 27-306 (347)
79 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-28 5.5E-33 185.9 28.9 241 63-329 11-266 (311)
80 KOG0274 Cdc4 and related F-box 100.0 2.9E-29 6.3E-34 215.2 26.8 261 25-330 219-487 (537)
81 KOG0647 mRNA export protein (c 100.0 8.7E-29 1.9E-33 187.1 23.7 239 63-326 24-282 (347)
82 KOG1332 Vesicle coat complex C 100.0 3.3E-29 7.1E-34 184.1 20.4 238 21-273 20-288 (299)
83 KOG0294 WD40 repeat-containing 100.0 3.7E-28 8.1E-33 184.8 26.4 262 26-327 3-283 (362)
84 KOG0296 Angio-associated migra 100.0 6.3E-29 1.4E-33 192.4 22.5 245 60-330 58-361 (399)
85 KOG0288 WD40 repeat protein Ti 100.0 5.9E-30 1.3E-34 201.0 15.9 274 7-323 173-459 (459)
86 KOG0270 WD40 repeat-containing 100.0 9.7E-29 2.1E-33 195.9 21.7 277 6-328 170-452 (463)
87 KOG0306 WD40-repeat-containing 100.0 7.3E-28 1.6E-32 202.5 27.2 287 7-327 318-624 (888)
88 PTZ00420 coronin; Provisional 100.0 2.3E-27 5E-32 204.3 31.1 222 88-328 50-296 (568)
89 KOG1332 Vesicle coat complex C 100.0 3.7E-29 8E-34 183.8 17.1 254 58-325 3-286 (299)
90 KOG0973 Histone transcription 100.0 3E-28 6.6E-33 212.6 25.5 287 10-329 14-359 (942)
91 KOG0639 Transducin-like enhanc 100.0 7.7E-29 1.7E-33 199.6 19.3 271 11-324 421-703 (705)
92 KOG1036 Mitotic spindle checkp 100.0 1.2E-27 2.5E-32 181.6 24.2 237 64-327 11-264 (323)
93 KOG0302 Ribosome Assembly prot 100.0 2.9E-28 6.2E-33 189.6 21.1 266 4-318 146-432 (440)
94 KOG0772 Uncharacterized conser 100.0 4.6E-28 1E-32 195.6 21.1 251 60-326 161-446 (641)
95 KOG4328 WD40 protein [Function 100.0 2.3E-27 4.9E-32 188.8 24.5 289 7-326 184-496 (498)
96 KOG0283 WD40 repeat-containing 100.0 5.3E-28 1.2E-32 205.9 22.1 240 7-271 265-576 (712)
97 KOG0293 WD40 repeat-containing 100.0 3.2E-28 7E-33 191.4 18.7 244 5-272 262-514 (519)
98 KOG0308 Conserved WD40 repeat- 100.0 5.1E-28 1.1E-32 200.3 19.8 272 21-326 34-328 (735)
99 KOG0299 U3 snoRNP-associated p 100.0 1.7E-27 3.8E-32 189.6 21.6 240 60-327 136-412 (479)
100 KOG0301 Phospholipase A2-activ 100.0 6.3E-27 1.4E-31 195.2 25.8 277 4-327 6-290 (745)
101 KOG2055 WD40 repeat protein [G 100.0 9.2E-27 2E-31 185.6 24.2 279 7-325 211-512 (514)
102 KOG0299 U3 snoRNP-associated p 100.0 2.1E-26 4.5E-31 183.5 25.9 279 9-325 142-456 (479)
103 KOG0640 mRNA cleavage stimulat 100.0 1.2E-27 2.5E-32 181.9 18.0 248 60-327 106-385 (430)
104 KOG0288 WD40 repeat protein Ti 100.0 1.9E-28 4.1E-33 192.6 14.1 240 61-330 170-422 (459)
105 KOG4283 Transcription-coupled 100.0 6.1E-27 1.3E-31 176.8 21.6 286 7-324 41-364 (397)
106 KOG1446 Histone H3 (Lys4) meth 100.0 6.2E-25 1.4E-29 167.5 32.1 279 8-328 13-306 (311)
107 KOG2096 WD40 repeat protein [G 100.0 3.2E-26 7E-31 174.7 24.1 281 8-323 82-400 (420)
108 KOG1408 WD40 repeat protein [F 100.0 2.4E-26 5.1E-31 192.7 25.5 274 25-327 337-715 (1080)
109 KOG0321 WD40 repeat-containing 100.0 1.2E-26 2.6E-31 191.9 23.0 289 11-329 51-395 (720)
110 KOG0646 WD40 repeat protein [G 100.0 1.3E-26 2.9E-31 184.9 22.4 260 42-329 16-311 (476)
111 KOG0274 Cdc4 and related F-box 100.0 8E-27 1.7E-31 200.3 22.8 231 65-329 207-445 (537)
112 KOG1407 WD40 repeat protein [F 100.0 4.5E-27 9.9E-32 174.5 18.1 206 103-329 18-223 (313)
113 KOG0269 WD40 repeat-containing 100.0 1.8E-27 4E-32 200.6 17.4 243 67-327 40-298 (839)
114 KOG0307 Vesicle coat complex C 100.0 6.6E-28 1.4E-32 211.5 15.4 302 11-327 8-329 (1049)
115 KOG1036 Mitotic spindle checkp 100.0 1.8E-25 3.9E-30 169.8 26.2 265 9-314 13-294 (323)
116 KOG0268 Sof1-like rRNA process 100.0 9.3E-28 2E-32 185.9 13.8 241 58-328 58-305 (433)
117 KOG0973 Histone transcription 100.0 1.4E-26 3E-31 202.3 22.7 251 64-326 10-313 (942)
118 KOG0643 Translation initiation 100.0 7.1E-26 1.5E-30 168.7 22.7 221 61-298 5-244 (327)
119 KOG0300 WD40 repeat-containing 100.0 1.8E-26 4E-31 176.1 19.3 249 58-330 140-433 (481)
120 KOG0641 WD40 repeat protein [G 100.0 5.6E-25 1.2E-29 160.4 25.8 239 65-327 31-305 (350)
121 KOG2445 Nuclear pore complex c 100.0 5.3E-25 1.2E-29 167.2 26.6 254 58-325 5-318 (361)
122 KOG0289 mRNA splicing factor [ 100.0 6.4E-26 1.4E-30 179.6 22.4 238 7-268 256-503 (506)
123 KOG4328 WD40 protein [Function 100.0 5.5E-26 1.2E-30 181.0 21.4 252 60-328 180-453 (498)
124 KOG1539 WD repeat protein [Gen 99.9 7.1E-26 1.5E-30 192.6 23.2 291 4-329 238-610 (910)
125 KOG0270 WD40 repeat-containing 99.9 4.6E-26 1E-30 180.8 20.6 239 70-327 129-406 (463)
126 KOG0290 Conserved WD40 repeat- 99.9 4.5E-25 9.7E-30 166.4 24.8 300 3-321 38-361 (364)
127 KOG0650 WD40 repeat nucleolar 99.9 1.6E-25 3.4E-30 184.1 23.6 283 4-322 392-732 (733)
128 KOG0302 Ribosome Assembly prot 99.9 3.2E-26 7E-31 178.2 18.4 212 105-326 151-379 (440)
129 KOG0278 Serine/threonine kinas 99.9 9.4E-27 2E-31 171.9 13.8 243 59-328 7-257 (334)
130 KOG1273 WD40 repeat protein [G 99.9 1.9E-25 4.1E-30 170.3 21.0 278 11-326 25-323 (405)
131 KOG0308 Conserved WD40 repeat- 99.9 4.5E-26 9.8E-31 188.9 19.1 237 71-326 29-286 (735)
132 KOG2048 WD40 repeat protein [G 99.9 4.3E-24 9.3E-29 178.0 30.4 279 9-324 25-318 (691)
133 KOG0639 Transducin-like enhanc 99.9 2.1E-26 4.4E-31 185.7 15.9 240 64-329 417-667 (705)
134 KOG0294 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 164.7 24.0 255 8-293 39-305 (362)
135 KOG1063 RNA polymerase II elon 99.9 1.4E-24 3.1E-29 181.3 25.0 292 7-327 186-650 (764)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.3E-28 171.6 32.4 265 25-329 2-283 (300)
137 KOG2106 Uncharacterized conser 99.9 4.2E-23 9.1E-28 166.8 30.0 274 10-325 201-521 (626)
138 KOG2445 Nuclear pore complex c 99.9 1.1E-23 2.5E-28 160.0 24.7 271 10-295 11-342 (361)
139 KOG0307 Vesicle coat complex C 99.9 2.5E-26 5.5E-31 201.7 11.6 244 70-329 10-288 (1049)
140 KOG0646 WD40 repeat protein [G 99.9 2.3E-24 4.9E-29 172.3 21.5 250 25-297 51-331 (476)
141 KOG4283 Transcription-coupled 99.9 7.2E-25 1.6E-29 165.7 16.5 211 103-329 41-280 (397)
142 KOG2106 Uncharacterized conser 99.9 1.4E-22 2.9E-27 163.8 30.0 271 10-324 247-625 (626)
143 KOG1274 WD40 repeat protein [G 99.9 2.4E-23 5.3E-28 179.1 26.4 237 63-326 10-263 (933)
144 KOG1274 WD40 repeat protein [G 99.9 3.7E-23 8E-28 178.0 27.4 260 8-298 12-283 (933)
145 KOG0267 Microtubule severing p 99.9 1.8E-25 3.9E-30 187.4 10.3 231 42-297 12-250 (825)
146 KOG0267 Microtubule severing p 99.9 1.2E-25 2.7E-30 188.4 8.4 222 84-327 6-228 (825)
147 KOG4378 Nuclear protein COP1 [ 99.9 4.3E-23 9.3E-28 166.5 21.5 260 12-296 37-304 (673)
148 KOG0301 Phospholipase A2-activ 99.9 2.9E-23 6.3E-28 173.5 21.2 233 58-325 6-249 (745)
149 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-23 4.7E-28 168.2 19.0 261 43-327 11-282 (673)
150 KOG2048 WD40 repeat protein [G 99.9 2E-22 4.4E-27 168.1 25.2 240 64-327 23-277 (691)
151 KOG2919 Guanine nucleotide-bin 99.9 2.4E-22 5.2E-27 154.0 23.4 270 14-313 54-359 (406)
152 KOG4227 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 161.6 20.4 291 6-325 50-387 (609)
153 KOG0290 Conserved WD40 repeat- 99.9 4.8E-23 1E-27 155.6 19.0 245 67-327 45-320 (364)
154 KOG2919 Guanine nucleotide-bin 99.9 4.5E-23 9.8E-28 157.9 18.8 239 69-326 52-328 (406)
155 KOG0321 WD40 repeat-containing 99.9 7.1E-23 1.5E-27 169.8 21.4 247 70-329 53-351 (720)
156 KOG1587 Cytoplasmic dynein int 99.9 2.7E-22 5.9E-27 171.3 25.7 270 42-328 220-519 (555)
157 KOG2096 WD40 repeat protein [G 99.9 8.5E-23 1.8E-27 156.2 18.9 215 95-325 76-308 (420)
158 KOG1034 Transcriptional repres 99.9 3.6E-23 7.7E-28 158.7 16.5 255 60-328 32-340 (385)
159 KOG1188 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 156.0 19.7 276 25-325 41-346 (376)
160 KOG1063 RNA polymerase II elon 99.9 6E-22 1.3E-26 165.7 24.3 288 10-325 55-391 (764)
161 KOG1445 Tumor-specific antigen 99.9 2E-22 4.3E-27 167.4 20.2 122 195-328 627-753 (1012)
162 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.7E-26 166.2 25.8 277 9-325 288-648 (910)
163 KOG1007 WD repeat protein TSSC 99.9 6.9E-22 1.5E-26 149.2 20.3 249 9-270 63-360 (370)
164 KOG0649 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 138.7 26.8 264 15-323 16-314 (325)
165 KOG1408 WD40 repeat protein [F 99.9 4.7E-22 1E-26 167.3 18.5 240 11-272 461-714 (1080)
166 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.9E-20 1.9E-24 150.3 30.7 254 10-295 31-300 (300)
167 KOG2055 WD40 repeat protein [G 99.9 2.9E-21 6.2E-26 154.6 20.0 235 66-326 213-468 (514)
168 KOG1009 Chromatin assembly com 99.9 8E-21 1.7E-25 149.7 21.4 288 9-329 13-376 (434)
169 KOG0650 WD40 repeat nucleolar 99.9 5.1E-21 1.1E-25 157.9 20.3 241 58-323 392-678 (733)
170 KOG1034 Transcriptional repres 99.9 8.5E-21 1.8E-25 145.8 19.2 291 10-325 39-383 (385)
171 KOG1517 Guanine nucleotide bin 99.9 2.9E-20 6.3E-25 162.7 24.7 286 10-330 1065-1386(1387)
172 KOG0303 Actin-binding protein 99.9 6.5E-20 1.4E-24 144.2 22.7 262 15-297 37-321 (472)
173 KOG1587 Cytoplasmic dynein int 99.9 4.7E-20 1E-24 157.7 23.9 248 5-272 238-517 (555)
174 KOG1538 Uncharacterized conser 99.9 2.8E-20 6E-25 155.7 21.8 272 11-326 14-294 (1081)
175 KOG0303 Actin-binding protein 99.9 2.7E-20 5.9E-25 146.3 20.0 206 104-328 80-297 (472)
176 KOG1273 WD40 repeat protein [G 99.9 2.6E-20 5.5E-25 142.5 19.2 241 69-329 26-284 (405)
177 KOG1188 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 144.0 16.5 198 118-328 41-245 (376)
178 KOG4227 WD40 repeat protein [G 99.9 7.3E-20 1.6E-24 144.1 19.2 247 62-326 52-323 (609)
179 KOG1445 Tumor-specific antigen 99.9 2.2E-20 4.8E-25 155.4 16.6 230 83-326 592-845 (1012)
180 KOG1963 WD40 repeat protein [G 99.9 1.9E-18 4E-23 148.9 28.8 286 11-326 207-539 (792)
181 KOG1523 Actin-related protein 99.9 6.4E-19 1.4E-23 135.1 22.1 233 8-262 9-269 (361)
182 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-17 7.2E-22 141.4 35.1 283 8-328 64-362 (466)
183 KOG0642 Cell-cycle nuclear pro 99.8 3.6E-20 7.9E-25 151.8 14.9 250 58-327 286-563 (577)
184 KOG1524 WD40 repeat-containing 99.8 6.6E-19 1.4E-23 143.9 20.2 202 82-321 75-282 (737)
185 PRK11028 6-phosphogluconolacto 99.8 6.8E-17 1.5E-21 134.7 31.5 263 42-325 10-304 (330)
186 KOG0322 G-protein beta subunit 99.8 8.5E-19 1.8E-23 131.0 17.4 245 60-324 8-322 (323)
187 KOG1523 Actin-related protein 99.8 1.2E-18 2.7E-23 133.6 17.2 209 105-327 10-238 (361)
188 KOG0649 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 124.5 19.2 227 68-326 12-275 (325)
189 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-18 3.1E-23 142.6 16.6 260 4-284 286-572 (577)
190 PRK01742 tolB translocation pr 99.8 1E-17 2.2E-22 144.0 21.3 232 43-297 183-427 (429)
191 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.6E-22 136.7 20.2 192 42-265 83-280 (737)
192 KOG0322 G-protein beta subunit 99.8 2.6E-18 5.6E-23 128.5 14.8 223 25-271 26-323 (323)
193 KOG1240 Protein kinase contain 99.8 5.3E-17 1.2E-21 144.6 24.7 281 12-323 1051-1431(1431)
194 KOG1272 WD40-repeat-containing 99.8 9.9E-19 2.2E-23 140.4 12.3 256 9-297 129-391 (545)
195 KOG1334 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 138.9 14.3 256 59-329 135-428 (559)
196 KOG1240 Protein kinase contain 99.8 8.1E-17 1.8E-21 143.5 23.9 257 62-328 1044-1337(1431)
197 KOG2394 WD40 protein DMR-N9 [G 99.8 2.6E-17 5.6E-22 134.7 19.1 199 43-251 143-385 (636)
198 COG2319 FOG: WD40 repeat [Gene 99.8 6.4E-15 1.4E-19 127.2 35.6 275 11-326 157-443 (466)
199 KOG1310 WD40 repeat protein [G 99.8 3.2E-18 7E-23 140.3 13.9 212 58-274 42-306 (758)
200 KOG2110 Uncharacterized conser 99.8 2.4E-15 5.2E-20 117.9 29.0 229 14-273 7-250 (391)
201 KOG0644 Uncharacterized conser 99.8 7.1E-19 1.5E-23 150.6 9.4 236 63-329 187-430 (1113)
202 KOG1538 Uncharacterized conser 99.8 2.1E-17 4.4E-22 138.8 17.5 232 11-272 55-294 (1081)
203 KOG4497 Uncharacterized conser 99.8 3.1E-17 6.7E-22 126.6 16.8 271 11-326 50-392 (447)
204 KOG1334 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 135.3 14.7 293 7-326 137-467 (559)
205 KOG2139 WD40 repeat protein [G 99.8 8.7E-16 1.9E-20 120.1 24.4 221 12-259 101-363 (445)
206 KOG2321 WD40 repeat protein [G 99.8 2.7E-16 5.9E-21 129.8 22.4 280 7-324 49-342 (703)
207 KOG1009 Chromatin assembly com 99.8 6.9E-17 1.5E-21 127.8 18.0 154 66-227 13-196 (434)
208 KOG3881 Uncharacterized conser 99.8 2.1E-16 4.5E-21 124.6 20.4 241 66-328 55-323 (412)
209 KOG0771 Prolactin regulatory e 99.8 3.1E-17 6.8E-22 130.4 15.4 199 109-326 148-355 (398)
210 PRK11028 6-phosphogluconolacto 99.8 7.2E-15 1.6E-19 122.6 30.1 246 10-275 35-308 (330)
211 KOG1963 WD40 repeat protein [G 99.8 6E-15 1.3E-19 127.6 28.9 281 12-326 163-488 (792)
212 KOG0644 Uncharacterized conser 99.8 1.7E-17 3.7E-22 142.4 13.1 274 8-326 186-469 (1113)
213 KOG2110 Uncharacterized conser 99.7 6E-15 1.3E-19 115.7 26.0 232 67-328 6-251 (391)
214 KOG1517 Guanine nucleotide bin 99.7 7.3E-16 1.6E-20 135.7 22.7 244 68-329 1066-1337(1387)
215 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.4E-21 127.2 16.1 195 70-273 148-356 (398)
216 KOG1310 WD40 repeat protein [G 99.7 2E-16 4.2E-21 130.1 15.1 209 7-231 45-308 (758)
217 KOG0309 Conserved WD40 repeat- 99.7 1.5E-16 3.2E-21 135.1 14.5 305 4-329 19-343 (1081)
218 KOG3881 Uncharacterized conser 99.7 2.2E-15 4.7E-20 118.9 17.7 196 42-251 123-342 (412)
219 PRK03629 tolB translocation pr 99.7 1.6E-14 3.6E-19 123.9 24.9 233 43-296 178-428 (429)
220 KOG2111 Uncharacterized conser 99.7 2.2E-13 4.8E-18 105.0 26.5 175 42-228 73-258 (346)
221 KOG2111 Uncharacterized conser 99.7 3E-13 6.5E-18 104.3 27.2 229 12-273 8-258 (346)
222 PF10282 Lactonase: Lactonase, 99.7 8E-12 1.7E-16 104.5 36.2 280 27-329 2-328 (345)
223 PRK01742 tolB translocation pr 99.7 2.7E-14 5.9E-19 122.9 21.0 204 92-324 184-400 (429)
224 PRK04922 tolB translocation pr 99.7 7.5E-14 1.6E-18 120.4 23.6 232 43-295 183-432 (433)
225 KOG1354 Serine/threonine prote 99.7 1.3E-13 2.8E-18 107.5 21.6 242 11-272 27-360 (433)
226 PF08662 eIF2A: Eukaryotic tra 99.7 4.6E-14 1E-18 107.2 19.1 149 109-271 9-179 (194)
227 KOG2139 WD40 repeat protein [G 99.6 6.6E-14 1.4E-18 109.7 20.1 189 67-270 99-308 (445)
228 KOG1272 WD40-repeat-containing 99.6 8.6E-16 1.9E-20 123.8 9.7 224 68-323 131-360 (545)
229 COG2706 3-carboxymuconate cycl 99.6 7.3E-12 1.6E-16 98.8 30.9 281 25-326 3-322 (346)
230 KOG1409 Uncharacterized conser 99.6 4.1E-14 8.9E-19 110.1 17.7 218 42-273 44-272 (404)
231 PRK02889 tolB translocation pr 99.6 2.7E-13 5.9E-18 116.5 24.6 231 44-296 176-425 (427)
232 KOG1354 Serine/threonine prote 99.6 5.8E-14 1.3E-18 109.4 17.6 243 67-328 26-362 (433)
233 KOG2394 WD40 protein DMR-N9 [G 99.6 3.3E-14 7.1E-19 116.8 16.7 205 116-330 184-457 (636)
234 KOG0974 WD-repeat protein WDR6 99.6 6.9E-14 1.5E-18 123.2 19.6 193 111-328 93-291 (967)
235 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 113.0 25.6 208 95-327 188-413 (433)
236 PF02239 Cytochrom_D1: Cytochr 99.6 2.9E-11 6.3E-16 101.1 30.7 266 42-329 14-351 (369)
237 PRK05137 tolB translocation pr 99.6 4E-12 8.8E-17 109.8 26.1 232 43-296 181-433 (435)
238 KOG2041 WD40 repeat protein [G 99.6 2E-12 4.4E-17 110.2 22.8 279 10-325 15-337 (1189)
239 TIGR02800 propeller_TolB tol-p 99.6 3.8E-12 8.2E-17 109.9 25.0 231 43-294 169-417 (417)
240 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-12 2.4E-17 99.7 18.3 160 11-183 7-181 (194)
241 PRK03629 tolB translocation pr 99.5 4.4E-12 9.6E-17 109.0 23.9 206 95-327 183-408 (429)
242 PRK05137 tolB translocation pr 99.5 9E-12 2E-16 107.7 25.9 209 95-327 186-414 (435)
243 KOG4497 Uncharacterized conser 99.5 1.3E-13 2.9E-18 106.8 12.2 218 71-323 13-238 (447)
244 KOG0280 Uncharacterized conser 99.5 1.8E-12 4E-17 99.0 18.0 223 7-249 67-310 (339)
245 KOG1409 Uncharacterized conser 99.5 3.4E-12 7.3E-17 99.7 18.4 245 60-328 18-273 (404)
246 KOG4547 WD40 repeat-containing 99.5 1.9E-11 4E-16 102.0 22.4 200 82-290 5-241 (541)
247 PRK00178 tolB translocation pr 99.5 3E-11 6.6E-16 104.5 24.8 230 45-296 180-428 (430)
248 PF10282 Lactonase: Lactonase, 99.5 6.1E-09 1.3E-13 87.3 36.2 256 10-280 37-331 (345)
249 PF04762 IKI3: IKI3 family; I 99.5 2.5E-10 5.3E-15 105.8 29.2 280 10-326 76-457 (928)
250 PRK04792 tolB translocation pr 99.4 7.2E-11 1.6E-15 102.0 23.7 231 45-296 199-447 (448)
251 PRK02889 tolB translocation pr 99.4 3.3E-11 7.3E-16 103.7 19.7 181 127-328 176-363 (427)
252 KOG2315 Predicted translation 99.4 1.3E-09 2.8E-14 90.7 27.4 264 20-328 42-393 (566)
253 KOG4532 WD40-like repeat conta 99.4 1.7E-10 3.6E-15 87.4 20.3 245 42-298 50-315 (344)
254 KOG2321 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 102.3 15.9 190 14-228 138-345 (703)
255 PF02239 Cytochrom_D1: Cytochr 99.4 2.7E-10 5.7E-15 95.4 23.7 191 118-328 6-205 (369)
256 PRK01029 tolB translocation pr 99.4 3.9E-10 8.4E-15 96.8 24.7 239 43-297 164-426 (428)
257 KOG0309 Conserved WD40 repeat- 99.4 3.1E-12 6.7E-17 109.4 10.5 208 105-328 24-235 (1081)
258 KOG4547 WD40 repeat-containing 99.4 1.2E-10 2.5E-15 97.4 19.2 199 115-326 3-221 (541)
259 KOG0974 WD-repeat protein WDR6 99.4 2.4E-11 5.2E-16 107.6 15.9 179 25-227 100-289 (967)
260 TIGR02800 propeller_TolB tol-p 99.4 9.5E-10 2.1E-14 95.1 25.1 195 105-326 189-398 (417)
261 KOG1064 RAVE (regulator of V-A 99.4 7.7E-12 1.7E-16 116.4 11.7 190 11-234 2207-2405(2439)
262 PRK04792 tolB translocation pr 99.3 1.2E-09 2.6E-14 94.6 24.3 200 105-327 217-427 (448)
263 KOG1064 RAVE (regulator of V-A 99.3 1.2E-11 2.6E-16 115.2 12.0 192 63-282 2205-2407(2439)
264 COG5170 CDC55 Serine/threonine 99.3 1.3E-10 2.7E-15 90.0 14.6 240 66-324 26-366 (460)
265 PF15492 Nbas_N: Neuroblastoma 99.3 1.8E-08 3.9E-13 77.6 25.1 198 108-330 46-264 (282)
266 KOG2314 Translation initiation 99.3 5.3E-09 1.2E-13 87.2 23.7 273 11-326 212-526 (698)
267 COG5170 CDC55 Serine/threonine 99.3 8.5E-11 1.8E-15 90.9 12.5 210 105-327 26-311 (460)
268 KOG4532 WD40-like repeat conta 99.3 2.1E-09 4.6E-14 81.6 19.5 218 25-258 85-320 (344)
269 KOG2315 Predicted translation 99.3 5.1E-09 1.1E-13 87.3 22.1 231 43-297 145-412 (566)
270 KOG4714 Nucleoporin [Nuclear s 99.3 1.4E-10 3.1E-15 87.4 11.9 150 116-273 100-254 (319)
271 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.4E-12 78.2 29.4 255 44-329 27-334 (352)
272 PRK01029 tolB translocation pr 99.2 3.5E-09 7.7E-14 90.9 21.8 202 106-328 185-406 (428)
273 KOG2314 Translation initiation 99.2 1.4E-08 3E-13 84.8 23.6 293 8-328 248-576 (698)
274 PLN02919 haloacid dehalogenase 99.2 3.8E-08 8.3E-13 93.2 28.3 240 71-329 572-892 (1057)
275 COG5354 Uncharacterized protei 99.2 2.1E-08 4.5E-13 82.9 23.0 272 10-328 33-351 (561)
276 COG4946 Uncharacterized protei 99.2 1.2E-07 2.7E-12 77.9 27.2 165 24-215 332-507 (668)
277 PRK00178 tolB translocation pr 99.2 1.6E-08 3.4E-13 87.7 24.0 198 105-327 198-408 (430)
278 KOG2041 WD40 repeat protein [G 99.2 4.4E-09 9.5E-14 90.4 19.5 239 7-272 66-338 (1189)
279 COG2706 3-carboxymuconate cycl 99.2 7.7E-07 1.7E-11 70.9 29.6 267 10-293 40-344 (346)
280 KOG2695 WD40 repeat protein [G 99.2 1.4E-10 3.1E-15 90.9 8.2 161 154-330 216-381 (425)
281 PF04762 IKI3: IKI3 family; I 99.1 4.7E-07 1E-11 84.5 30.0 236 66-323 75-377 (928)
282 COG5354 Uncharacterized protei 99.1 5E-07 1.1E-11 75.0 25.7 280 15-327 74-397 (561)
283 KOG3914 WD repeat protein WDR4 99.1 5E-09 1.1E-13 83.9 13.6 158 153-330 66-228 (390)
284 PLN02919 haloacid dehalogenase 99.1 4.6E-07 1E-11 86.0 29.0 240 13-273 571-890 (1057)
285 KOG1275 PAB-dependent poly(A) 99.1 6.9E-09 1.5E-13 91.4 15.2 184 116-324 146-341 (1118)
286 PRK04043 tolB translocation pr 99.1 5E-07 1.1E-11 77.4 26.3 222 45-290 170-416 (419)
287 COG4946 Uncharacterized protei 99.0 1.2E-07 2.7E-12 77.9 20.4 183 22-228 276-479 (668)
288 KOG3914 WD repeat protein WDR4 99.0 7.2E-09 1.6E-13 83.0 13.0 154 110-273 67-225 (390)
289 KOG1912 WD40 repeat protein [G 99.0 1.1E-07 2.4E-12 82.8 20.0 287 12-329 18-368 (1062)
290 TIGR02658 TTQ_MADH_Hv methylam 99.0 2.4E-06 5.2E-11 70.4 26.9 223 42-281 75-338 (352)
291 KOG4190 Uncharacterized conser 99.0 1.9E-09 4.1E-14 90.0 8.5 195 62-267 731-943 (1034)
292 KOG4714 Nucleoporin [Nuclear s 99.0 4E-09 8.7E-14 79.8 9.4 152 161-327 100-256 (319)
293 PF08450 SGL: SMP-30/Gluconola 99.0 6.9E-06 1.5E-10 65.6 28.9 212 71-297 4-237 (246)
294 KOG1912 WD40 repeat protein [G 99.0 1.9E-07 4.1E-12 81.3 19.9 239 67-326 16-305 (1062)
295 PF08450 SGL: SMP-30/Gluconola 99.0 7.4E-06 1.6E-10 65.4 28.2 217 13-259 3-244 (246)
296 KOG4190 Uncharacterized conser 99.0 2.8E-09 6E-14 89.1 8.1 207 104-329 734-952 (1034)
297 KOG2695 WD40 repeat protein [G 98.9 5.6E-09 1.2E-13 82.1 8.7 162 121-295 228-402 (425)
298 PF15492 Nbas_N: Neuroblastoma 98.9 3.2E-06 6.9E-11 65.5 23.2 190 22-228 7-261 (282)
299 PF00400 WD40: WD domain, G-be 98.9 4.5E-09 9.8E-14 57.4 5.9 39 275-323 1-39 (39)
300 TIGR03300 assembly_YfgL outer 98.9 6.5E-06 1.4E-10 70.3 25.6 260 25-329 66-342 (377)
301 KOG1920 IkappaB kinase complex 98.8 5E-06 1.1E-10 76.3 25.2 257 11-298 70-347 (1265)
302 KOG2066 Vacuolar assembly/sort 98.8 3.4E-07 7.4E-12 80.1 16.6 182 67-273 40-235 (846)
303 TIGR03300 assembly_YfgL outer 98.8 5.9E-06 1.3E-10 70.5 24.3 244 42-322 113-376 (377)
304 KOG1008 Uncharacterized conser 98.8 2.5E-09 5.4E-14 90.7 3.5 199 66-272 56-276 (783)
305 KOG0882 Cyclophilin-related pe 98.8 5.4E-08 1.2E-12 79.4 10.6 210 104-330 8-236 (558)
306 KOG1008 Uncharacterized conser 98.8 1.9E-09 4E-14 91.5 1.9 206 106-325 57-275 (783)
307 PF00400 WD40: WD domain, G-be 98.8 3.8E-08 8.3E-13 53.6 5.9 38 140-178 2-39 (39)
308 KOG2114 Vacuolar assembly/sort 98.7 3.6E-06 7.7E-11 74.5 20.3 197 112-326 30-244 (933)
309 PF11768 DUF3312: Protein of u 98.7 1.6E-06 3.5E-11 73.7 17.6 109 67-183 206-332 (545)
310 PRK04043 tolB translocation pr 98.7 1.1E-05 2.3E-10 69.3 22.2 197 107-327 189-402 (419)
311 KOG2066 Vacuolar assembly/sort 98.7 2.8E-06 6.1E-11 74.5 17.4 184 106-325 40-233 (846)
312 KOG1645 RING-finger-containing 98.6 5E-07 1.1E-11 72.8 11.0 100 129-234 175-274 (463)
313 PF11768 DUF3312: Protein of u 98.6 5.3E-06 1.2E-10 70.6 17.6 162 129-297 186-369 (545)
314 KOG3617 WD40 and TPR repeat-co 98.6 4.7E-06 1E-10 73.8 17.3 108 11-135 17-131 (1416)
315 KOG1832 HIV-1 Vpr-binding prot 98.6 8.1E-08 1.8E-12 84.9 6.4 201 11-252 1103-1313(1516)
316 KOG1275 PAB-dependent poly(A) 98.6 2.1E-06 4.5E-11 76.4 14.6 174 84-269 149-340 (1118)
317 KOG1645 RING-finger-containing 98.6 1.4E-05 3.1E-10 64.7 17.5 235 11-271 195-461 (463)
318 PF07433 DUF1513: Protein of u 98.6 0.00012 2.5E-09 58.7 22.1 203 107-329 6-251 (305)
319 KOG1920 IkappaB kinase complex 98.5 2.1E-05 4.7E-10 72.3 19.5 203 106-327 69-324 (1265)
320 PF13360 PQQ_2: PQQ-like domai 98.5 0.00027 5.9E-09 56.1 23.9 212 90-329 11-234 (238)
321 KOG3621 WD40 repeat-containing 98.5 7.2E-05 1.6E-09 65.1 20.8 153 11-183 32-200 (726)
322 PF07433 DUF1513: Protein of u 98.5 0.00039 8.5E-09 55.8 24.4 230 69-321 7-281 (305)
323 KOG0882 Cyclophilin-related pe 98.5 1.2E-05 2.5E-10 66.2 14.7 189 25-229 21-234 (558)
324 PRK11138 outer membrane biogen 98.5 0.00015 3.2E-09 62.3 22.4 181 118-324 206-393 (394)
325 KOG3621 WD40 repeat-containing 98.4 7.1E-06 1.5E-10 71.1 13.4 150 105-260 33-188 (726)
326 KOG2114 Vacuolar assembly/sort 98.4 0.00011 2.3E-09 65.6 20.5 201 73-286 30-257 (933)
327 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00068 1.5E-08 57.2 24.9 262 10-298 43-340 (353)
328 PF08596 Lgl_C: Lethal giant l 98.3 0.00076 1.6E-08 57.3 22.9 241 68-327 3-292 (395)
329 PF04053 Coatomer_WDAD: Coatom 98.3 0.00061 1.3E-08 58.6 22.0 222 66-327 32-264 (443)
330 KOG1832 HIV-1 Vpr-binding prot 98.3 9.2E-07 2E-11 78.5 4.6 196 97-328 1093-1294(1516)
331 PRK11138 outer membrane biogen 98.2 0.0021 4.7E-08 55.2 24.3 222 83-329 121-357 (394)
332 PF06977 SdiA-regulated: SdiA- 98.2 0.0017 3.6E-08 51.3 22.7 192 10-222 22-246 (248)
333 PF08596 Lgl_C: Lethal giant l 98.2 0.0022 4.8E-08 54.5 22.4 238 11-273 3-337 (395)
334 KOG3617 WD40 and TPR repeat-co 98.1 1.5E-05 3.2E-10 70.8 9.1 109 111-228 21-133 (1416)
335 PF08553 VID27: VID27 cytoplas 98.1 0.00022 4.7E-09 64.9 16.5 139 124-270 501-646 (794)
336 PRK02888 nitrous-oxide reducta 98.1 0.0012 2.6E-08 58.2 20.1 246 22-326 139-405 (635)
337 PF06433 Me-amine-dh_H: Methyl 98.1 0.0036 7.7E-08 51.1 25.9 263 43-330 16-325 (342)
338 PF13360 PQQ_2: PQQ-like domai 98.1 0.0033 7.2E-08 49.8 21.9 211 43-272 2-231 (238)
339 KOG4640 Anaphase-promoting com 98.0 4.1E-05 9E-10 65.8 8.9 96 149-251 20-116 (665)
340 PF03178 CPSF_A: CPSF A subuni 98.0 0.007 1.5E-07 50.5 25.7 212 10-269 24-263 (321)
341 PF04053 Coatomer_WDAD: Coatom 97.9 0.01 2.2E-07 51.4 22.1 214 9-271 32-262 (443)
342 KOG1897 Damage-specific DNA bi 97.9 0.019 4.1E-07 52.9 29.2 156 152-326 777-943 (1096)
343 KOG4640 Anaphase-promoting com 97.9 9E-05 2E-09 63.8 9.3 95 105-205 20-115 (665)
344 PF03178 CPSF_A: CPSF A subuni 97.9 0.011 2.4E-07 49.3 22.5 181 127-326 2-203 (321)
345 PF06977 SdiA-regulated: SdiA- 97.9 0.0085 1.8E-07 47.3 23.6 199 106-322 22-247 (248)
346 COG0823 TolB Periplasmic compo 97.8 0.0047 1E-07 53.1 18.7 214 66-295 192-423 (425)
347 PF05694 SBP56: 56kDa selenium 97.8 0.013 2.8E-07 49.4 20.4 199 116-328 86-345 (461)
348 smart00320 WD40 WD40 repeats. 97.8 8.8E-05 1.9E-09 39.4 5.3 38 276-323 3-40 (40)
349 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0098 2.1E-07 46.2 24.5 143 17-182 18-167 (354)
350 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0032 7E-08 42.2 12.6 95 12-130 2-109 (111)
351 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.004 8.7E-08 41.8 12.5 100 152-264 2-107 (111)
352 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.027 5.8E-07 47.7 26.9 231 43-298 22-293 (353)
353 PRK02888 nitrous-oxide reducta 97.7 0.0061 1.3E-07 54.0 16.8 165 43-227 214-405 (635)
354 COG0823 TolB Periplasmic compo 97.6 0.005 1.1E-07 52.9 15.7 164 145-327 188-360 (425)
355 smart00320 WD40 WD40 repeats. 97.6 0.00018 3.9E-09 38.1 4.8 30 194-224 11-40 (40)
356 PF04841 Vps16_N: Vps16, N-ter 97.6 0.038 8.2E-07 47.7 24.0 186 45-251 62-270 (410)
357 PF00780 CNH: CNH domain; Int 97.5 0.036 7.8E-07 45.1 23.8 216 82-329 7-259 (275)
358 PF04841 Vps16_N: Vps16, N-ter 97.5 0.038 8.1E-07 47.7 19.5 49 128-181 62-110 (410)
359 KOG2079 Vacuolar assembly/sort 97.5 0.0093 2E-07 55.3 15.6 208 82-297 99-340 (1206)
360 PF14870 PSII_BNR: Photosynthe 97.4 0.054 1.2E-06 44.2 30.0 268 5-322 12-301 (302)
361 PF05694 SBP56: 56kDa selenium 97.3 0.076 1.7E-06 45.0 22.9 221 24-260 87-393 (461)
362 KOG2444 WD40 repeat protein [G 97.3 0.00043 9.4E-09 52.3 4.8 145 163-326 31-178 (238)
363 PF08553 VID27: VID27 cytoplas 97.3 0.013 2.8E-07 53.9 14.7 146 161-324 492-646 (794)
364 PHA02713 hypothetical protein; 97.2 0.018 3.9E-07 51.8 14.9 192 116-330 303-538 (557)
365 PRK13616 lipoprotein LpqB; Pro 97.2 0.088 1.9E-06 47.6 18.9 174 106-296 350-551 (591)
366 cd00216 PQQ_DH Dehydrogenases 97.2 0.14 3.1E-06 45.4 25.5 69 161-230 227-323 (488)
367 PHA02713 hypothetical protein; 97.1 0.025 5.4E-07 50.9 14.8 94 128-228 433-535 (557)
368 KOG2395 Protein involved in va 97.1 0.019 4E-07 49.2 12.6 145 116-270 344-499 (644)
369 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.098 2.1E-06 40.9 19.0 134 117-264 23-158 (354)
370 PF00780 CNH: CNH domain; Int 97.0 0.13 2.9E-06 41.7 28.1 225 24-284 7-266 (275)
371 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0038 8.2E-08 34.9 5.3 31 105-135 11-41 (47)
372 KOG2444 WD40 repeat protein [G 97.0 0.0035 7.5E-08 47.6 6.6 107 116-227 69-178 (238)
373 KOG2079 Vacuolar assembly/sort 97.0 0.0054 1.2E-07 56.7 8.9 103 116-226 98-203 (1206)
374 KOG1897 Damage-specific DNA bi 96.9 0.34 7.4E-06 45.2 27.6 220 25-272 685-943 (1096)
375 COG3204 Uncharacterized protei 96.9 0.16 3.4E-06 40.6 18.0 158 65-227 84-264 (316)
376 KOG4441 Proteins containing BT 96.9 0.29 6.2E-06 44.3 18.9 139 82-228 285-454 (571)
377 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0066 1.4E-07 34.0 5.6 32 194-226 10-41 (47)
378 PF02897 Peptidase_S9_N: Proly 96.8 0.28 6.1E-06 42.6 27.9 240 69-329 126-408 (414)
379 PF10647 Gmad1: Lipoprotein Lp 96.8 0.19 4.2E-06 40.2 17.0 153 151-320 25-191 (253)
380 PRK13616 lipoprotein LpqB; Pro 96.8 0.12 2.7E-06 46.7 16.1 155 126-297 328-508 (591)
381 KOG2395 Protein involved in va 96.7 0.12 2.6E-06 44.5 14.3 126 164-298 348-484 (644)
382 PF08728 CRT10: CRT10; InterP 96.7 0.34 7.5E-06 44.2 17.7 108 116-225 113-245 (717)
383 PF05096 Glu_cyclase_2: Glutam 96.6 0.25 5.5E-06 39.2 20.2 182 108-313 47-250 (264)
384 PF14870 PSII_BNR: Photosynthe 96.6 0.32 6.8E-06 39.9 24.7 233 59-321 9-257 (302)
385 COG3391 Uncharacterized conser 96.6 0.43 9.2E-06 40.9 23.0 200 109-327 77-285 (381)
386 KOG4441 Proteins containing BT 96.5 0.26 5.6E-06 44.6 16.4 185 25-227 334-547 (571)
387 KOG1916 Nuclear protein, conta 96.5 0.00032 7E-09 63.1 -1.9 177 10-227 181-375 (1283)
388 PF15390 DUF4613: Domain of un 96.5 0.19 4.1E-06 44.1 14.1 155 150-327 20-188 (671)
389 KOG3630 Nuclear pore complex, 96.4 0.084 1.8E-06 49.7 12.3 142 106-252 101-255 (1405)
390 cd00216 PQQ_DH Dehydrogenases 96.3 0.71 1.5E-05 41.1 22.3 156 112-283 223-434 (488)
391 PF15390 DUF4613: Domain of un 96.3 0.16 3.5E-06 44.5 13.1 152 106-269 20-184 (671)
392 PHA03098 kelch-like protein; P 96.3 0.33 7.2E-06 43.8 15.9 105 116-227 294-415 (534)
393 PF10313 DUF2415: Uncharacteri 96.2 0.029 6.3E-07 30.4 5.3 32 150-181 1-34 (43)
394 PF12234 Rav1p_C: RAVE protein 96.2 0.35 7.6E-06 43.7 15.0 112 198-324 32-155 (631)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.74 1.6E-05 39.6 22.1 91 110-204 6-117 (415)
396 COG5276 Uncharacterized conser 96.1 0.53 1.2E-05 37.7 25.0 252 42-324 104-368 (370)
397 KOG3630 Nuclear pore complex, 96.1 0.11 2.5E-06 48.9 11.6 140 151-297 102-255 (1405)
398 PHA03098 kelch-like protein; P 96.0 0.48 1E-05 42.7 15.7 105 116-227 389-512 (534)
399 COG3386 Gluconolactonase [Carb 96.0 0.72 1.6E-05 38.0 19.5 195 112-325 31-243 (307)
400 PF12234 Rav1p_C: RAVE protein 96.0 0.25 5.4E-06 44.6 12.9 106 116-226 40-156 (631)
401 PF10214 Rrn6: RNA polymerase 95.9 1.6 3.4E-05 41.3 21.5 170 95-272 73-277 (765)
402 COG3391 Uncharacterized conser 95.9 1 2.2E-05 38.6 26.7 193 69-272 76-284 (381)
403 PF06433 Me-amine-dh_H: Methyl 95.8 0.87 1.9E-05 37.7 22.3 147 83-234 148-327 (342)
404 PF10313 DUF2415: Uncharacteri 95.8 0.042 9.1E-07 29.8 4.8 32 196-227 1-34 (43)
405 COG3490 Uncharacterized protei 95.7 0.85 1.8E-05 36.5 20.7 222 84-329 50-314 (366)
406 PF14761 HPS3_N: Hermansky-Pud 95.6 0.72 1.6E-05 35.3 14.8 143 118-270 29-213 (215)
407 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 1.6 3.5E-05 39.2 27.2 55 173-229 272-336 (527)
408 KOG2247 WD40 repeat-containing 95.5 0.0046 9.9E-08 52.3 0.6 144 68-223 36-185 (615)
409 PHA02790 Kelch-like protein; P 95.5 1.6 3.5E-05 38.8 16.3 187 116-329 271-474 (480)
410 PF14583 Pectate_lyase22: Olig 95.1 1.8 3.8E-05 36.7 23.6 183 73-264 42-261 (386)
411 PLN00033 photosystem II stabil 95.1 2 4.2E-05 37.0 16.4 107 63-177 277-396 (398)
412 PRK13684 Ycf48-like protein; P 95.0 1.8 3.9E-05 36.4 27.6 153 149-325 172-331 (334)
413 PHA02790 Kelch-like protein; P 95.0 2.4 5.3E-05 37.7 16.0 102 116-227 362-471 (480)
414 PRK10115 protease 2; Provision 95.0 3.2 6.9E-05 38.8 30.1 237 68-327 128-396 (686)
415 COG5276 Uncharacterized conser 94.9 1.6 3.5E-05 35.1 22.5 157 106-273 87-243 (370)
416 TIGR02604 Piru_Ver_Nterm putat 94.8 2 4.4E-05 36.6 14.4 138 151-297 15-195 (367)
417 COG3386 Gluconolactonase [Carb 94.7 2 4.4E-05 35.5 23.7 204 42-261 45-276 (307)
418 PF02897 Peptidase_S9_N: Proly 94.7 2.7 5.9E-05 36.5 29.8 228 14-261 125-391 (414)
419 COG3490 Uncharacterized protei 94.7 1.8 4E-05 34.7 18.8 206 6-228 64-312 (366)
420 KOG2377 Uncharacterized conser 94.7 1.6 3.4E-05 37.4 12.7 139 117-260 33-173 (657)
421 KOG2377 Uncharacterized conser 94.6 1.1 2.3E-05 38.4 11.7 135 153-297 26-165 (657)
422 PRK10115 protease 2; Provision 94.6 4 8.8E-05 38.1 25.2 197 106-325 127-344 (686)
423 PF14781 BBS2_N: Ciliary BBSom 94.5 1.1 2.4E-05 31.4 11.9 110 111-227 4-126 (136)
424 KOG2247 WD40 repeat-containing 94.4 0.0082 1.8E-07 50.9 -0.7 134 109-252 38-171 (615)
425 PF08728 CRT10: CRT10; InterP 94.4 4.1 9E-05 37.6 16.0 110 207-324 113-245 (717)
426 PF10168 Nup88: Nuclear pore c 94.2 4.9 0.00011 37.6 21.8 66 68-137 86-181 (717)
427 COG3204 Uncharacterized protei 94.1 2.5 5.5E-05 34.1 20.0 163 106-273 86-263 (316)
428 PF10168 Nup88: Nuclear pore c 94.1 4.1 8.8E-05 38.1 15.5 84 149-234 84-187 (717)
429 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.0 4.4 9.6E-05 36.5 19.0 106 117-230 69-193 (527)
430 TIGR02604 Piru_Ver_Nterm putat 93.8 3.9 8.4E-05 35.0 16.9 104 108-215 16-142 (367)
431 KOG4499 Ca2+-binding protein R 93.7 2.6 5.7E-05 32.8 19.0 150 105-261 108-274 (310)
432 KOG1898 Splicing factor 3b, su 93.6 7 0.00015 37.4 20.6 79 6-94 579-665 (1205)
433 COG4590 ABC-type uncharacteriz 93.1 1.4 3.1E-05 37.7 9.8 160 106-274 221-389 (733)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 93.1 1.2 2.5E-05 38.4 9.6 82 107-190 309-408 (415)
435 PF14583 Pectate_lyase22: Olig 93.1 5 0.00011 34.1 25.6 216 20-260 43-300 (386)
436 PF14761 HPS3_N: Hermansky-Pud 92.6 3.8 8.2E-05 31.5 13.3 145 163-325 29-214 (215)
437 KOG4460 Nuclear pore complex, 92.6 6.9 0.00015 34.4 13.2 35 151-185 167-203 (741)
438 PF10647 Gmad1: Lipoprotein Lp 92.4 4.9 0.00011 32.3 21.0 144 107-259 25-183 (253)
439 COG5167 VID27 Protein involved 92.4 7.3 0.00016 34.2 14.5 144 116-271 478-632 (776)
440 KOG4499 Ca2+-binding protein R 92.4 4.3 9.4E-05 31.6 18.6 103 109-215 161-273 (310)
441 PLN00033 photosystem II stabil 92.1 7.2 0.00016 33.7 28.2 110 194-322 279-396 (398)
442 KOG2280 Vacuolar assembly/sort 92.0 9.9 0.00021 35.1 15.5 194 43-251 63-270 (829)
443 PF14781 BBS2_N: Ciliary BBSom 92.0 3.1 6.7E-05 29.3 12.5 114 201-327 4-127 (136)
444 PRK13684 Ycf48-like protein; P 91.5 7.7 0.00017 32.7 23.6 221 66-321 45-284 (334)
445 KOG1916 Nuclear protein, conta 91.4 0.3 6.5E-06 45.2 4.4 191 126-326 110-324 (1283)
446 PF11715 Nup160: Nucleoporin N 91.1 1.5 3.4E-05 39.7 8.7 74 115-188 156-256 (547)
447 KOG1900 Nuclear pore complex, 90.8 12 0.00025 36.9 14.0 141 169-326 96-273 (1311)
448 TIGR03118 PEPCTERM_chp_1 conse 90.7 8.1 0.00017 31.6 21.8 235 11-262 24-324 (336)
449 PF07569 Hira: TUP1-like enhan 90.7 2.2 4.8E-05 33.3 8.1 68 113-182 18-97 (219)
450 PF12657 TFIIIC_delta: Transcr 90.6 3.8 8.1E-05 30.7 9.1 32 104-135 84-121 (173)
451 PF07569 Hira: TUP1-like enhan 90.6 2.6 5.6E-05 33.0 8.4 72 195-271 12-95 (219)
452 PF07995 GSDH: Glucose / Sorbo 90.1 10 0.00023 31.8 22.0 69 195-264 252-328 (331)
453 COG3823 Glutamine cyclotransfe 90.0 7.3 0.00016 29.9 14.9 176 116-313 55-248 (262)
454 PF14727 PHTB1_N: PTHB1 N-term 89.8 13 0.00027 32.4 26.6 139 82-226 37-204 (418)
455 KOG1983 Tomosyn and related SN 89.6 7.8 0.00017 37.9 12.3 24 204-228 243-266 (993)
456 PF09826 Beta_propel: Beta pro 89.5 16 0.00034 33.0 19.8 159 148-327 324-520 (521)
457 COG4257 Vgb Streptogramin lyas 88.5 12 0.00025 30.2 16.0 201 107-327 63-264 (353)
458 KOG4460 Nuclear pore complex, 88.5 17 0.00036 32.2 12.0 77 150-228 104-200 (741)
459 PF11715 Nup160: Nucleoporin N 88.5 2.8 6E-05 38.1 8.3 22 307-329 231-252 (547)
460 PF12768 Rax2: Cortical protei 88.1 13 0.00028 30.3 13.8 98 127-228 16-125 (281)
461 COG5167 VID27 Protein involved 88.0 13 0.00029 32.7 11.2 144 161-324 478-631 (776)
462 PF12657 TFIIIC_delta: Transcr 87.9 6.1 0.00013 29.6 8.5 33 150-182 86-123 (173)
463 TIGR03118 PEPCTERM_chp_1 conse 87.9 14 0.0003 30.3 21.2 212 108-328 25-282 (336)
464 PF10214 Rrn6: RNA polymerase 87.7 26 0.00057 33.4 24.1 73 151-227 205-277 (765)
465 PF02333 Phytase: Phytase; In 86.3 20 0.00044 30.6 21.6 193 116-326 67-291 (381)
466 KOG1898 Splicing factor 3b, su 86.0 35 0.00076 33.1 18.5 178 128-325 854-1048(1205)
467 TIGR02276 beta_rpt_yvtn 40-res 86.0 3.6 7.9E-05 21.8 5.5 30 115-146 1-31 (42)
468 PF14727 PHTB1_N: PTHB1 N-term 85.4 24 0.00052 30.7 20.6 196 6-227 125-361 (418)
469 PLN02193 nitrile-specifier pro 85.3 27 0.00058 31.1 13.7 108 116-228 228-353 (470)
470 TIGR03074 PQQ_membr_DH membran 85.1 36 0.00078 32.4 19.7 108 117-230 194-348 (764)
471 PF12768 Rax2: Cortical protei 84.8 20 0.00043 29.3 14.2 119 172-296 16-147 (281)
472 TIGR03606 non_repeat_PQQ dehyd 84.8 27 0.00059 30.8 13.5 54 107-160 31-89 (454)
473 PLN02193 nitrile-specifier pro 84.4 29 0.00064 30.9 15.5 66 116-184 328-414 (470)
474 PF13449 Phytase-like: Esteras 84.3 23 0.00051 29.7 22.4 99 151-252 86-226 (326)
475 COG5290 IkappaB kinase complex 84.3 6.3 0.00014 36.6 7.9 96 67-169 247-356 (1243)
476 PF02333 Phytase: Phytase; In 83.9 26 0.00057 30.0 23.3 204 71-281 58-299 (381)
477 PF05096 Glu_cyclase_2: Glutam 83.3 22 0.00048 28.6 20.6 162 43-214 67-249 (264)
478 TIGR02276 beta_rpt_yvtn 40-res 82.9 5.3 0.00012 21.2 5.2 29 162-190 4-32 (42)
479 KOG1900 Nuclear pore complex, 82.5 56 0.0012 32.7 15.4 34 193-227 240-273 (1311)
480 PF13570 PQQ_3: PQQ-like domai 81.5 4.1 9E-05 21.6 3.8 21 116-136 20-40 (40)
481 TIGR03548 mutarot_permut cycli 81.2 31 0.00067 28.8 15.1 55 115-171 170-233 (323)
482 COG4590 ABC-type uncharacteriz 81.2 37 0.00079 29.7 11.4 151 67-228 221-388 (733)
483 TIGR03548 mutarot_permut cycli 80.5 33 0.00071 28.7 18.0 66 116-183 123-197 (323)
484 KOG1983 Tomosyn and related SN 80.4 63 0.0014 32.0 13.8 24 67-94 36-59 (993)
485 PF10395 Utp8: Utp8 family; I 79.4 53 0.0012 30.5 20.2 152 66-227 129-306 (670)
486 PLN02153 epithiospecifier prot 78.9 38 0.00083 28.5 14.5 54 128-183 102-170 (341)
487 TIGR03606 non_repeat_PQQ dehyd 78.9 46 0.001 29.4 19.0 56 149-205 29-88 (454)
488 COG4880 Secreted protein conta 78.2 44 0.00096 28.9 14.8 142 148-297 426-577 (603)
489 KOG1896 mRNA cleavage and poly 76.7 84 0.0018 31.3 24.9 146 163-325 1047-1213(1366)
490 PF12341 DUF3639: Protein of u 76.4 7.1 0.00015 18.8 3.7 26 150-178 2-27 (27)
491 PF07676 PD40: WD40-like Beta 76.0 9.3 0.0002 19.9 5.2 30 284-322 7-38 (39)
492 smart00564 PQQ beta-propeller 76.0 7.4 0.00016 19.3 3.6 23 163-185 7-29 (33)
493 PF05935 Arylsulfotrans: Aryls 75.0 62 0.0014 28.9 15.3 137 84-228 129-303 (477)
494 PF08801 Nucleoporin_N: Nup133 74.1 61 0.0013 28.4 11.0 139 166-327 40-221 (422)
495 PLN02153 epithiospecifier prot 72.7 57 0.0012 27.5 16.8 53 128-183 51-112 (341)
496 PF01011 PQQ: PQQ enzyme repea 72.4 12 0.00026 19.5 4.1 27 164-190 2-28 (38)
497 PF07995 GSDH: Glucose / Sorbo 71.8 60 0.0013 27.4 23.9 231 68-320 3-330 (331)
498 KOG3616 Selective LIM binding 70.8 14 0.00031 34.2 6.1 70 149-226 14-83 (1636)
499 KOG2280 Vacuolar assembly/sort 69.4 1E+02 0.0022 29.0 16.7 52 126-182 63-114 (829)
500 PF14779 BBS1: Ciliary BBSome 67.6 64 0.0014 26.0 15.1 70 105-177 176-255 (257)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-49 Score=306.51 Aligned_cols=280 Identities=19% Similarity=0.334 Sum_probs=247.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+++-|++|+|.+ ..||+|+ .|.++++||+.+.. ++ ...++|...|.+++|+|+ ++.||+|+
T Consensus 116 e~Vl~~~fsp~g---~~l~tGs----------GD~TvR~WD~~TeT-p~-~t~KgH~~WVlcvawsPD----gk~iASG~ 176 (480)
T KOG0271|consen 116 EAVLSVQFSPTG---SRLVTGS----------GDTTVRLWDLDTET-PL-FTCKGHKNWVLCVAWSPD----GKKIASGS 176 (480)
T ss_pred CcEEEEEecCCC---ceEEecC----------CCceEEeeccCCCC-cc-eeecCCccEEEEEEECCC----cchhhccc
Confidence 455666666654 8999998 89999999999986 44 445899999999999999 99999999
Q ss_pred CCccE-EEecCCCcc-------cCccEEEEEEcC-----CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 90 ADGGL-LRDITGEKI-------SSSMCLCLEWNP-----SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~-------~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
.||.| +|+..+++. |...|++++|.| ..++|++++.||.|+|||+..++ ++..+.+|..+|+|+.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVR 254 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEE
Confidence 99999 999887664 789999999976 56789999999999999998774 4888999999999999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe-----------c--------------------
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI-----------P-------------------- 205 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~-------------------- 205 (331)
|- ...++++|+.|++|++|+...+.+...++. |...|+.++.+ |
T Consensus 255 wG--G~gliySgS~DrtIkvw~a~dG~~~r~lkG---HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 255 WG--GEGLIYSGSQDRTIKVWRALDGKLCRELKG---HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred Ec--CCceEEecCCCceEEEEEccchhHHHhhcc---cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 96 468999999999999999999988888887 99999999877 2
Q ss_pred ----CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107 206 ----SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 206 ----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (331)
+.+..|++|+.|.++.+|+....++|+.. +.+|..-|+.+.|+|++ .++++++.|..+++|+... ++.+.+|
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t--Gk~lasf 405 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT--GKFLASF 405 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhh-hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC--cchhhhh
Confidence 02235999999999999999887778876 78999999999999997 6777778888889998877 7999999
Q ss_pred ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 282 AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 282 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+||-.+|+.++|+.|. ++|+||+ .|.++++|++.+..+
T Consensus 406 RGHv~~VYqvawsaDs---------RLlVS~S-kDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADS---------RLLVSGS-KDSTLKVWDVRTKKL 443 (480)
T ss_pred hhccceeEEEEeccCc---------cEEEEcC-CCceEEEEEeeeeee
Confidence 9999999999999998 8999999 999999999988754
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-49 Score=309.56 Aligned_cols=278 Identities=21% Similarity=0.274 Sum_probs=248.6
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+.|+..+.|++++ +.||+|+ -+|.++||+....+ ....+.+|...|.++.|+|... +..+|+|
T Consensus 175 ~rPis~~~fS~ds---~~laT~s----------wsG~~kvW~~~~~~--~~~~l~gH~~~v~~~~fhP~~~--~~~lat~ 237 (459)
T KOG0272|consen 175 TRPISGCSFSRDS---KHLATGS----------WSGLVKVWSVPQCN--LLQTLRGHTSRVGAAVFHPVDS--DLNLATA 237 (459)
T ss_pred CCcceeeEeecCC---CeEEEee----------cCCceeEeecCCcc--eeEEEeccccceeeEEEccCCC--ccceeee
Confidence 4577888888887 8999999 59999999999884 5566799999999999999831 5689999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.||++ +|++.+... |...|..++|+|+|++|++++.|.+-++||++++.. +....+|...|.+++|+| +
T Consensus 238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~-D 314 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQP-D 314 (459)
T ss_pred ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecC-C
Confidence 999999 999988543 788999999999999999999999999999999754 566789999999999998 9
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
+.++++|+.|..-+|||+|+++++..+.. |..+|.+|+|+| +|..||||+.|++++|||++.. .++.. ..+|..
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~im~L~g---H~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~-ipAH~n 388 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCIMFLAG---HIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR-SELYT-IPAHSN 388 (459)
T ss_pred CceeeccCccchhheeecccCcEEEEecc---cccceeeEeECC-CceEEeecCCCCcEEEeeeccc-cccee-cccccc
Confidence 99999999999999999999999888887 999999999999 9999999999999999999985 44444 689999
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
-|+.++|+|....++++++.|+.+++|.-.. ..+++++.||.+.|.+++.++++ ++|+|++ .|+++++
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~---------~~i~t~s-~DRT~KL 456 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDS---------QAIATSS-FDRTIKL 456 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCC---------ceEEEec-cCceeee
Confidence 9999999996657777777888878877665 78999999999999999999999 7999999 9999999
Q ss_pred EcC
Q 020107 322 WMP 324 (331)
Q Consensus 322 W~~ 324 (331)
|..
T Consensus 457 W~~ 459 (459)
T KOG0272|consen 457 WRP 459 (459)
T ss_pred ccC
Confidence 963
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-44 Score=279.83 Aligned_cols=284 Identities=19% Similarity=0.323 Sum_probs=240.3
Q ss_pred eeeeecCc---ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCC
Q 020107 4 AHCELDGN---ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGN 80 (331)
Q Consensus 4 ~~~~~~~~---~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (331)
+.++..+| +.||+|+|++ ..||+|+ .||.|++||.++++ ++...+++|...|++++|.|-+..
T Consensus 149 p~~t~KgH~~WVlcvawsPDg---k~iASG~----------~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~ 214 (480)
T KOG0271|consen 149 PLFTCKGHKNWVLCVAWSPDG---KKIASGS----------KDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLV 214 (480)
T ss_pred cceeecCCccEEEEEEECCCc---chhhccc----------cCCeEEEecCCCCC-cccccccCcccceeEEeecccccC
Confidence 34455565 5677777766 8999999 89999999999887 566667999999999999885321
Q ss_pred -CCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee
Q 020107 81 -AGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL 152 (331)
Q Consensus 81 -~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v 152 (331)
..++||+++.||.+ ||++..+.+ |..+|+|+.|--+ .+|++|+.|++|++|+...+++ ..++++|...|
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~--~r~lkGHahwv 291 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL--CRELKGHAHWV 291 (480)
T ss_pred CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--HHhhcccchhe
Confidence 15699999999999 999988654 7899999999643 5799999999999999998865 88999999999
Q ss_pred EEEeeC-----------C------------------------CCCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCc
Q 020107 153 WATSFD-----------V------------------------HQPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKM 196 (331)
Q Consensus 153 ~~~~~~-----------~------------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~ 196 (331)
+.++.+ | +.+..+++|++|.++.+|+....+ ++..+.. |+.
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg---Hq~ 368 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG---HQA 368 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc---hhh
Confidence 999887 1 122369999999999999987554 3445555 999
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107 197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE 276 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
-|+.+.|+| ++.++|+++.|..|++||.++++. +.. +.+|-++|+.++|+.|. .++++++.|..+++|++.. .+
T Consensus 369 lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~-las-fRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~t--kK 442 (480)
T KOG0271|consen 369 LVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKF-LAS-FRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRT--KK 442 (480)
T ss_pred heeeEEECC-CccEEEEeecccceeeeeCCCcch-hhh-hhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeee--ee
Confidence 999999999 999999999999999999999744 444 58899999999999996 6666777788899999988 47
Q ss_pred eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
+...+.||.+.|++++|+|+| +.+++|+ .|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG---------~rV~sgg-kdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDG---------QRVASGG-KDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCC---------ceeecCC-CceEEEeec
Confidence 888899999999999999999 6999999 999999996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-43 Score=262.24 Aligned_cols=279 Identities=18% Similarity=0.269 Sum_probs=239.7
Q ss_pred eeeecCcc---eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107 5 HCELDGNA---DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 5 ~~~~~~~~---~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
+..|.||. .++.|+++. +++++++ .||.+.|||.-+.. +...+ +.....|..++|+|.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds---r~ivSaS----------qDGklIvWDs~Ttn-K~hai-pl~s~WVMtCA~sPS---- 108 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS---RRIVSAS----------QDGKLIVWDSFTTN-KVHAI-PLPSSWVMTCAYSPS---- 108 (343)
T ss_pred EEEecccccceeeeEecCCc---CeEEeec----------cCCeEEEEEccccc-ceeEE-ecCceeEEEEEECCC----
Confidence 34666665 555666665 8999998 89999999988765 33333 556778999999999
Q ss_pred CCeEEEEcCCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 82 GPFLAQADADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
++++|+|+-|... |+++.+.+ .|.+.+.|+.|-+ ...|++++.|.+..+||+++++. +..|.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~--~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ--TQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE--EEEecCC
Confidence 9999999999999 99888541 1677888999987 56799999999999999999865 8899999
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.+.|.+++++|.+++.+++|+.|+..++||+|.+.+.+.|.. |...|+++.|.| ++.-|++|+.|++.++||+|..
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc---cccccceEEEcc-CCCeeeecCCCceeEEEeecCC
Confidence 999999999998899999999999999999999999999888 999999999999 9999999999999999999985
Q ss_pred CCCcee-eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107 229 SKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 229 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
+.+.. .......+|++++|+..| .+++++..+.++.+|+.-. ++.+..+.+|.+.|+++..+|+| .
T Consensus 262 -~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNRvScl~~s~DG---------~ 328 (343)
T KOG0286|consen 262 -QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLK--GERVGVLAGHENRVSCLGVSPDG---------M 328 (343)
T ss_pred -cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccc--cceEEEeeccCCeeEEEEECCCC---------c
Confidence 43433 122345689999999997 7777777888888998877 68888999999999999999999 6
Q ss_pred EEEEeecCCCeEEEEc
Q 020107 308 LVATCSFYDRLLRIWM 323 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~ 323 (331)
.++||+ +|.+||||.
T Consensus 329 av~TgS-WDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGS-WDSTLRIWA 343 (343)
T ss_pred EEEecc-hhHheeecC
Confidence 999999 999999995
No 5
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-43 Score=258.19 Aligned_cols=289 Identities=24% Similarity=0.399 Sum_probs=243.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEe--ecccCCCCCCCCCcEEEEeccCcccceEEeEeee-cCcEeEEEEcCCCCCCCCeE
Q 020107 9 DGNADAVEFCPQDSYHHVLAAST--YTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~--~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l 85 (331)
..+-++|+|+|+-+ ++||+++ .-+.. .+|++.|.++...+ .+....... ...+.+++|++.. ...+
T Consensus 8 gf~GysvqfSPf~~--nrLavAt~q~yGl~-----G~G~L~ile~~~~~-gi~e~~s~d~~D~LfdV~Wse~~---e~~~ 76 (311)
T KOG0277|consen 8 GFHGYSVQFSPFVE--NRLAVATAQHYGLA-----GNGRLFILEVTDPK-GIQECQSYDTEDGLFDVAWSENH---ENQV 76 (311)
T ss_pred CcccceeEeccccc--chhheeehhhcccc-----cCceEEEEecCCCC-CeEEEEeeecccceeEeeecCCC---cceE
Confidence 46789999999988 5555554 22222 38999999997443 355544433 5679999999987 6699
Q ss_pred EEEcCCccE-EEecCCCc-------ccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 86 AQADADGGL-LRDITGEK-------ISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
++++.||++ +|++.... .|+..|.++.|++.. ..+++++.|++|++|+...+ ..+.++.+|...|...+
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIYQAA 154 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEEEEEe
Confidence 999999999 99965432 378999999999854 55788889999999999866 44889999999999999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
|+|..++++++++.|+++++||++.......+.. |...|.++.|+..+.++++||+.|+.|+.||+++.+.|+.+ +
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a---h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e-L 230 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA---HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE-L 230 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEe---ccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee-e
Confidence 9999999999999999999999998765555555 99999999999989999999999999999999999899888 5
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
.+|.-.|..++|+|....++++++.|-.+++|+.... ...+.+...|++-|.+++|++..+ .++|++| .|
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~--------~~vAs~g-WD 300 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDP--------GQVASTG-WD 300 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccC--------ceeeecc-cc
Confidence 8999999999999998677777777777888887754 566777888999999999999887 8999999 99
Q ss_pred CeEEEEcC
Q 020107 317 RLLRIWMP 324 (331)
Q Consensus 317 ~~i~iW~~ 324 (331)
+.++||+.
T Consensus 301 e~l~Vw~p 308 (311)
T KOG0277|consen 301 ELLYVWNP 308 (311)
T ss_pred cceeeecc
Confidence 99999996
No 6
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.3e-44 Score=280.16 Aligned_cols=277 Identities=20% Similarity=0.328 Sum_probs=245.0
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+-++..|.|.|.+ +.|++|+ ..|.+.+|+...-. ++.+...|..+|++|.|+++ +.++++|
T Consensus 96 kc~V~~v~WtPeG---RRLltgs----------~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~----g~wmiSg 156 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG---RRLLTGS----------QSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHN----GTWMISG 156 (464)
T ss_pred ccceeeEEEcCCC---ceeEeec----------ccccEEEecCceee--HHHHhhhhcccceeEEEccC----CCEEEEc
Confidence 3467889999887 8999998 79999999987664 77778899999999999999 9999999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.+|.| +|+..-... |...|.+++|+|+...+++++.||+|+|||....+. ...+.+|.-.|.+++|+| .
T Consensus 157 D~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--e~vL~GHgwdVksvdWHP-~ 233 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--ERVLRGHGWDVKSVDWHP-T 233 (464)
T ss_pred CCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--hheeccCCCCcceeccCC-c
Confidence 999999 998876543 458999999999999999999999999999987654 566799999999999999 7
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
..++++++.|..|++||.+++.++..+.. |+..|..+.|+| ++++|++++.|..++++|+++++.... ..+|..
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~tlh~---HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~--~r~Hkk 307 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLATLHG---HKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFT--YRGHKK 307 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhhhhh---ccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHH--hhcchh
Confidence 78999999999999999999999988887 999999999999 889999999999999999997644444 388999
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
.|+++.|+|-.++++.++|.++.+..|.+... +++..+ .+|...|++++|+|-| .+|++|+ .|.+++
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--~p~~~i~~AHd~~iwsl~~hPlG---------hil~tgs-nd~t~r 375 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--EPLGEIPPAHDGEIWSLAYHPLG---------HILATGS-NDRTVR 375 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEecccc--ccccCCCcccccceeeeeccccc---------eeEeecC-CCccee
Confidence 99999999998899999999999888888743 333333 3799999999999999 7999999 999999
Q ss_pred EEcCC
Q 020107 321 IWMPE 325 (331)
Q Consensus 321 iW~~~ 325 (331)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99753
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-40 Score=243.65 Aligned_cols=281 Identities=17% Similarity=0.260 Sum_probs=233.6
Q ss_pred eeecCcce---eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCC
Q 020107 6 CELDGNAD---AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGG 79 (331)
Q Consensus 6 ~~~~~~~~---~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 79 (331)
-++++|.. .++-.+.++ +.+..++ +|..+.+|++...... ....+++|...|..+..+++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~--~~l~sas----------rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-- 74 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNS--DILVSAS----------RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-- 74 (315)
T ss_pred eeecCCCceEEEEEeecCCC--ceEEEcc----------cceEEEEEEeccCccccCceeeeeeccceEecceEEccC--
Confidence 35666554 445555544 7888888 8999999999865433 35566889999999999999
Q ss_pred CCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee--cccc
Q 020107 80 NAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEF 150 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~ 150 (331)
+.+.++++.|+++ +||+.+++. |...|.+++|+++.+.+++|+.|.+|.+|+..... ..++. .+..
T Consensus 75 --g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~ 149 (315)
T KOG0279|consen 75 --GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHRE 149 (315)
T ss_pred --CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---EEEEecCCCcC
Confidence 9999999999999 999999754 78899999999999999999999999999998643 23333 2378
Q ss_pred eeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 151 ELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 151 ~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
.|.|+.|+|.. ...|++++.|++|++||+++.+....+.. |++.++.++++| ||.++++|+.||.+.+||++..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~- 224 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEG- 224 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECC-CCCEEecCCCCceEEEEEccCC-
Confidence 89999999953 67899999999999999998877666666 999999999999 9999999999999999999986
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee----cC-----CcceeeeeecCCCCcc
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA----KH-----GSLAYGADWQRGRSSL 300 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~~ 300 (331)
+.+.. ..+...|.+++|+|+ .+.++.+....|+||++... ..+.+++ +. .-...+++|+++|
T Consensus 225 k~lys--l~a~~~v~sl~fspn--rywL~~at~~sIkIwdl~~~--~~v~~l~~d~~g~s~~~~~~~clslaws~dG--- 295 (315)
T KOG0279|consen 225 KNLYS--LEAFDIVNSLCFSPN--RYWLCAATATSIKIWDLESK--AVVEELKLDGIGPSSKAGDPICLSLAWSADG--- 295 (315)
T ss_pred ceeEe--ccCCCeEeeEEecCC--ceeEeeccCCceEEEeccch--hhhhhccccccccccccCCcEEEEEEEcCCC---
Confidence 45555 789999999999999 78888888888999999874 4444333 21 3356789999999
Q ss_pred cccccCcEEEEeecCCCeEEEEcCCC
Q 020107 301 EGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 301 ~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..|.++- .|+.|++|.+..
T Consensus 296 ------~tLf~g~-td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 ------QTLFAGY-TDNVIRVWQVAK 314 (315)
T ss_pred ------cEEEeee-cCCcEEEEEeec
Confidence 6888888 899999998753
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.9e-42 Score=267.68 Aligned_cols=242 Identities=21% Similarity=0.237 Sum_probs=216.7
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCC--CCeEEEEecCCeEEEEE
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVS 133 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d 133 (331)
.+.+.+|..+.|+++ ++.|++|+.+|.+ +|+....+. |...+.++.|+|. +..+++++.||++++|+
T Consensus 172 ~gd~rPis~~~fS~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred ccCCCcceeeEeecC----CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 455778999999999 9999999999999 999887643 7899999999997 56799999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
+.+. .++..+.+|...|..++|+| ++++|++++.|.+-++||++++........ |...|.+++|+| +|.+++|
T Consensus 248 ~~~e--~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEG---Hs~~v~~iaf~~-DGSL~~t 320 (459)
T KOG0272|consen 248 LSQE--TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEG---HSKGVFSIAFQP-DGSLAAT 320 (459)
T ss_pred cCCC--cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcc---cccccceeEecC-CCceeec
Confidence 9876 45889999999999999999 999999999999999999999876555554 999999999999 9999999
Q ss_pred EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107 214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 293 (331)
|+.|..-+|||+|++...+. +.+|..+|.++.|+|+| ..++++++|+.++||+++.. +.+.++.+|.+.|+.+.|
T Consensus 321 GGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR--SELYTIPAHSNLVSQVKY 395 (459)
T ss_pred cCccchhheeecccCcEEEE--ecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc--ccceecccccchhhheEe
Confidence 99999999999999755444 48899999999999997 77777788999999999985 668999999999999999
Q ss_pred cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|... .+|+|+| .|++++||...+...
T Consensus 396 ~p~~g--------~fL~Tas-yD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 396 SPQEG--------YFLVTAS-YDNTVKIWSTRTWSP 422 (459)
T ss_pred cccCC--------eEEEEcc-cCcceeeecCCCccc
Confidence 99554 8999999 999999999887654
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-39 Score=238.49 Aligned_cols=276 Identities=16% Similarity=0.256 Sum_probs=229.0
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-cc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+..++|+|-. |.+||+++ .|..|++|+..... .. ...+-.+|+..|++++|+|. +++|++|
T Consensus 16 r~W~~awhp~~--g~ilAscg----------~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~----g~~La~a 79 (312)
T KOG0645|consen 16 RVWSVAWHPGK--GVILASCG----------TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH----GRYLASA 79 (312)
T ss_pred cEEEEEeccCC--ceEEEeec----------CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC----CcEEEEe
Confidence 45577777763 37999998 89999999998522 11 23344679999999999999 9999999
Q ss_pred cCCccE-EEecCCC--------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeC
Q 020107 89 DADGGL-LRDITGE--------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 89 ~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
+.|.++ ||.-... +.|...|.|++|+++|++||+++.|.+|-||.+.. .+..+...++.|...|..+.|+
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999999 8876643 34789999999999999999999999999999875 5667788899999999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCC---CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRES---PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
| ...+|++++.|.+|++|+-..+ .+.+.+.. |...|.+++|+| .+..|++++.|++++||-.... +
T Consensus 160 P-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~---~--- 228 (312)
T KOG0645|consen 160 P-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD---L--- 228 (312)
T ss_pred C-CcceeEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecC-CCceEEEecCCcceEeeeeccC---c---
Confidence 9 7899999999999999987732 23455555 999999999999 9999999999999999987742 1
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----cceeE-EeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----AEVLE-TYAKHGSLAYGADWQRGRSSLEGKRKNSLVA 310 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 310 (331)
...|..+++.+.|. + +.++++|.++.++++...... .+++. .-..|...|++++|.|... ++|+
T Consensus 229 ~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~--------~~L~ 297 (312)
T KOG0645|consen 229 SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS--------NRLA 297 (312)
T ss_pred chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC--------Ccee
Confidence 25678899999999 4 889999999999999887531 11222 3346888999999999654 7999
Q ss_pred EeecCCCeEEEEcCC
Q 020107 311 TCSFYDRLLRIWMPE 325 (331)
Q Consensus 311 s~~~~d~~i~iW~~~ 325 (331)
++| +||.|++|.+.
T Consensus 298 s~~-DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGG-DDGIVNFWELE 311 (312)
T ss_pred ecC-CCceEEEEEec
Confidence 999 99999999875
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-39 Score=256.92 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=239.6
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeE------eeecCcEeEEEEc
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLY------RMDTAGIFDIKWS 75 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~------~~~~~~v~~~~~~ 75 (331)
++.++.+.+|.|... .+||+|+ .+-..++|++..... .++... ...+..|++++|+
T Consensus 177 ~~~~V~~~~WnP~~~--~llasg~----------~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD--GLLASGS----------GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred CCCceEEEecCchhh--hhhhccC----------CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 344566667777652 3899998 799999999986211 111110 1123569999999
Q ss_pred CCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107 76 PVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE 149 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 149 (331)
.+ |..||+|+.||.+ +|+..... .|+++|.++.|+..|.+|++++.|+++.+||..++.. ...+.-|.
T Consensus 245 ~~----G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~--~q~f~~~s 318 (524)
T KOG0273|consen 245 ND----GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV--KQQFEFHS 318 (524)
T ss_pred CC----CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE--EEeeeecc
Confidence 99 9999999999999 99987654 4899999999999999999999999999999988865 55666678
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
.+...+.|- +...+++++.|+.|+++.+....+...+.. |..+|.+|.|+| .+.+|++++.|++++||.+...
T Consensus 319 ~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~G---H~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 319 APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIG---HHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred CCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeec---ccCceEEEEECC-CCceEEEecCCCeeEeeecCCC-
Confidence 777889996 457899999999999999998888888887 999999999999 9999999999999999998874
Q ss_pred CCceeeeeecCCceEEEEECCCCC--------CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIP--------GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 301 (331)
..... +..|...|+.+.|+|.++ ..+++++.++.+++|++.. +.++.+|..|+.+|++++|+|++
T Consensus 392 ~~~~~-l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g---- 464 (524)
T KOG0273|consen 392 NSVHD-LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNG---- 464 (524)
T ss_pred cchhh-hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCC----
Confidence 44444 589999999999999763 4578888899999999988 69999999999999999999999
Q ss_pred ccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+++|+|+ .||.|.+|+..++.+
T Consensus 465 -----~ylAsGs-~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 465 -----RYLASGS-LDGCVHIWSTKTGKL 486 (524)
T ss_pred -----cEEEecC-CCCeeEeccccchhe
Confidence 7999999 999999999988765
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=233.75 Aligned_cols=269 Identities=13% Similarity=0.205 Sum_probs=228.2
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc-
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI- 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~- 103 (331)
-+||+++| |.+|++|...++. ....+ ....+.|+.+...|+ ++.||+++....-++|+.+.+.
T Consensus 11 viLvsA~Y----------DhTIRfWqa~tG~-C~rTi-qh~dsqVNrLeiTpd----k~~LAaa~~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 11 VILVSAGY----------DHTIRFWQALTGI-CSRTI-QHPDSQVNRLEITPD----KKDLAAAGNQHVRLYDLNSNNPN 74 (311)
T ss_pred eEEEeccC----------cceeeeeehhcCe-EEEEE-ecCccceeeEEEcCC----cchhhhccCCeeEEEEccCCCCC
Confidence 68999985 9999999999986 44444 333567999999999 8899988876655999988765
Q ss_pred -------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 104 -------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 104 -------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
|...|.++.|..+|+.+++|++||+++|||++... +.+.++ |..+|+++..+| +...|++|..+|.|++
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irv 150 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRV 150 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhcc-CCCCcceEEecC-CcceEEeecCCCcEEE
Confidence 57889999999999999999999999999999743 344554 678999999999 7788999999999999
Q ss_pred EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-----CCceeeeeecCCceEEEEECCC
Q 020107 177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-----KPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
||+++..+...+.. .-...|.++...| ++.+++.+..-|...+|++-+.. .|+.. +..|.+-+.++.+||+
T Consensus 151 WDl~~~~c~~~liP--e~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 151 WDLGENSCTHELIP--EDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPD 226 (311)
T ss_pred EEccCCccccccCC--CCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhh-eecccceEEEEEECCC
Confidence 99998765544432 2467899999999 99999999999999999997632 23443 6789999999999999
Q ss_pred CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+ .++++++++..+++|+..+. .+.-..+.+|...+++++||.++ ++|+|++ .|+.+++|+++.+..
T Consensus 227 ~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg---------~YlvTas-sd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 227 V-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADG---------EYLVTAS-SDHTARLWDLSAGKE 292 (311)
T ss_pred C-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCc---------cEEEecC-CCCceeecccccCce
Confidence 7 77888888999999999887 67777888999999999999999 7999999 999999999998864
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-38 Score=241.59 Aligned_cols=280 Identities=19% Similarity=0.270 Sum_probs=244.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.++-..|.+.-+.|...++++++ +|++|++||..+++ +...+++|...|.+++|+.. +++|++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as----------~d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~----Gk~l~t 167 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSAS----------EDATIKVFDTETGE--LERSLRGHTDSVFDISFDAS----GKYLAT 167 (406)
T ss_pred hhccccceeeeeeccCceEEEEec----------CCceEEEEEccchh--hhhhhhccccceeEEEEecC----ccEEEe
Confidence 445555555555555446888887 89999999999987 56677999999999999999 999999
Q ss_pred EcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 88 ADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
++.|-.+ +|+..+. ..|...|.++.|-|.|.++++++.|.+|+.|++.++ .++.++.+|...|..++.+.
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEEecC
Confidence 9999988 9998762 236788999999999999999999999999999998 45899999999999999995
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC---------C-----CCEEEEEecCCeEEEEEe
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS---------D-----SNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~-----~~~l~~~~~d~~i~iwd~ 225 (331)
++.++++++.|.+|++|-+.++++...+.. |+.+|-+++|.|. . +.++.+++.|++|++||+
T Consensus 246 -DGti~As~s~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 246 -DGTIIASCSNDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred -CeeEEEecCCCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 999999999999999999999998888888 9999999999874 1 258999999999999999
Q ss_pred cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccccccc
Q 020107 226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
.++ .++.+ +.+|...|..++|+|.| .++++...|+.+++|++.+ .++..++..|+.-|++++|..+.+
T Consensus 322 ~tg-~cL~t-L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~--~~cmk~~~ah~hfvt~lDfh~~~p------- 389 (406)
T KOG0295|consen 322 STG-MCLFT-LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKN--LQCMKTLEAHEHFVTSLDFHKTAP------- 389 (406)
T ss_pred cCC-eEEEE-EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecc--ceeeeccCCCcceeEEEecCCCCc-------
Confidence 997 45554 58999999999999996 6667777778899999988 588899999999999999999984
Q ss_pred CcEEEEeecCCCeEEEEcC
Q 020107 306 NSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 306 ~~~l~s~~~~d~~i~iW~~ 324 (331)
+++||+ -|.++++|.-
T Consensus 390 --~VvTGs-Vdqt~KvwEc 405 (406)
T KOG0295|consen 390 --YVVTGS-VDQTVKVWEC 405 (406)
T ss_pred --eEEecc-ccceeeeeec
Confidence 999999 9999999963
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-38 Score=266.07 Aligned_cols=261 Identities=16% Similarity=0.241 Sum_probs=226.4
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-----------------------------cceEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-----------------------------KNLEL 60 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-----------------------------~~~~~ 60 (331)
..+.|..|++++ .+||+|. .|..|++|.+...+ .....
T Consensus 379 ~~v~ca~fSdds---smlA~Gf----------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 379 QGVTCAEFSDDS---SMLACGF----------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcceeEeecCCc---chhhccc----------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 356677777776 7999997 79999999987421 01233
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
.+.+|.++|....|+|+ .++|+++++|+++ +|.+.+..+ |..+|..+.|+|.|-++|+++.|++.++|.
T Consensus 446 ~L~GH~GPVyg~sFsPd----~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPD----RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EeecCCCceeeeeeccc----ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 46789999999999999 8999999999999 999988654 889999999999999999999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
.... .+++.+.+|-..|.|+.|+| +.+++++|+.|.+||+||+.++..+..|.. |.++|.+++|+| +|.+|++
T Consensus 522 ~d~~--~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp-~Gr~LaS 594 (707)
T KOG0263|consen 522 TDHN--KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSP-CGRYLAS 594 (707)
T ss_pred cccC--CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcC-CCceEee
Confidence 9875 55889999999999999999 889999999999999999999999999987 999999999999 9999999
Q ss_pred EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc-----------------
Q 020107 214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE----------------- 276 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 276 (331)
|+.|+.|++||+.++ .++.+ +.+|.+.|.++.|+.++ ..+++++.++.+++|++......
T Consensus 595 g~ed~~I~iWDl~~~-~~v~~-l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 671 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANG-SLVKQ-LKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQEN 671 (707)
T ss_pred cccCCcEEEEEcCCC-cchhh-hhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccC
Confidence 999999999999996 44444 58999999999999998 88889999999999998764322
Q ss_pred -----eeEEeecCCcceeeeeecCCC
Q 020107 277 -----VLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 277 -----~~~~~~~h~~~v~~~~~~~~~ 297 (331)
.+.++.....+|..+.|...+
T Consensus 672 ~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 672 NASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred CCCcceeeeeeecCceEEEEEEeccc
Confidence 455666666688888888775
No 14
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.9e-38 Score=247.55 Aligned_cols=271 Identities=19% Similarity=0.332 Sum_probs=219.2
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
++..++.+..+++.|..| .++|+++ ..+.|+|||.......... .. .+.|+ +
T Consensus 120 ~i~h~gEVnRaRymPQnp--~iVAt~t----------~~~dv~Vfd~tk~~s~~~~---------~~-~~~Pd------l 171 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNP--NIVATKT----------SSGDVYVFDYTKHPSKPKA---------SG-ECRPD------L 171 (422)
T ss_pred eccCCccchhhhhCCCCC--cEEEecC----------CCCCEEEEEeccCCCcccc---------cc-cCCCc------e
Confidence 456789999999999998 8999988 7999999998765411111 00 34444 3
Q ss_pred EEEEcCCccEEEecCCCcccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeC
Q 020107 85 LAQADADGGLLRDITGEKISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 85 l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~ 158 (331)
.+.|..+ .-++++|++... .|++++.|+.|++||+.... ..+...+.+|...|..++|+
T Consensus 172 ~L~gH~~---------------eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 172 RLKGHEK---------------EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred EEEeecc---------------cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcc
Confidence 3333321 234566666443 48888888999999987632 34566788999999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
|.+..+|++++.|+.+.|||+|++....... .++|.+.|.|++|+|.++.+||||+.|++|.+||+|+..+++.. +..
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~-~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT-FEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCCCCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-ccC
Confidence 9999999999999999999999642222222 25599999999999999999999999999999999999888877 789
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccC
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKN 306 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 306 (331)
|...|.++.|+|+....++++|.|+.+.+|++.... .++++...||+..|..+.|+|+.+
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-------- 386 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-------- 386 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--------
Confidence 999999999999998899999999999999997632 456788889999999999999998
Q ss_pred cEEEEeecCCCeEEEEcCCCccc
Q 020107 307 SLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 307 ~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
..|+|++ +|+.+.||++...+.
T Consensus 387 W~I~Sva-eDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 387 WTIASVA-EDNILQIWQMAENIY 408 (422)
T ss_pred eEEEEec-CCceEEEeecccccc
Confidence 8999999 999999999986543
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-38 Score=264.93 Aligned_cols=235 Identities=20% Similarity=0.275 Sum_probs=210.7
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------------------------------cCccE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------------------------------SSSMC 108 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------------------------------~~~~v 108 (331)
..++|..|+++ ..+||.|-.|..+ +|.+...+. |.++|
T Consensus 379 ~~v~ca~fSdd----ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 379 QGVTCAEFSDD----SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred CcceeEeecCC----cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 46999999999 8899999999999 998873210 68899
Q ss_pred EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107 109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (331)
...+|+|+.++|+++++|+++|+|.+.+.. ++..+++|..+|+.+.|+| .+.+|++++.|++.++|.........++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s--~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWS--CLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccce--eEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999999999999874 4778899999999999999 7899999999999999999988877778
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
.. |.+.|.|+.|+| +.+++++|+.|.+||+||..++.. +. ++.+|.++|.+++|+|+| ..+++++.++.|.+|
T Consensus 532 ag---hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-VR-iF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 532 AG---HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-VR-IFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIW 604 (707)
T ss_pred cc---cccccceEEECC-cccccccCCCCceEEEEEcCCCcE-EE-EecCCCCceEEEEEcCCC-ceEeecccCCcEEEE
Confidence 77 999999999999 999999999999999999999643 33 368999999999999996 666666677788889
Q ss_pred EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++.. ++.+..+.+|++.|+++.|+.++ ..||++| .|.+|++||+..-
T Consensus 605 Dl~~--~~~v~~l~~Ht~ti~SlsFS~dg---------~vLasgg-~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLAN--GSLVKQLKGHTGTIYSLSFSRDG---------NVLASGG-ADNSVRLWDLTKV 651 (707)
T ss_pred EcCC--CcchhhhhcccCceeEEEEecCC---------CEEEecC-CCCeEEEEEchhh
Confidence 9887 68899999999999999999999 7999999 9999999998653
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=227.61 Aligned_cols=246 Identities=20% Similarity=0.263 Sum_probs=212.0
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
.+.++++|...|.++.|+++ .+.|++++.||.+ +||..+... ...-|..++|+|.++++|+|+-|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCC----cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44677999999999999999 9999999999999 999876543 367789999999999999999999999
Q ss_pred EEEcccc----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 131 IVSVVES----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 131 i~d~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
||++.+. .....+.+.+|.+.+.++.|-+ ...|++++.|.++.+||+++++....|.. |.+.|.+++++|.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~G---H~gDV~slsl~p~ 197 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHG---HTGDVMSLSLSPS 197 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecC---CcccEEEEecCCC
Confidence 9999853 2234567889999999999985 47799999999999999999998888887 9999999999998
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cC
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KH 284 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h 284 (331)
+++.+++|+-|+..++||+|.+ ..... +.+|.+.|++++|.|++ .-+++++.|...++|+++.. +.+..+. .-
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~-~c~qt-F~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~ 272 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSG-QCVQT-FEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRAD--QELAVYSHDSI 272 (343)
T ss_pred CCCeEEecccccceeeeeccCc-ceeEe-ecccccccceEEEccCC-CeeeecCCCceeEEEeecCC--cEEeeeccCcc
Confidence 8999999999999999999996 44544 68999999999999996 55666666677899999986 4444444 44
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..+|++++||..| ++|.+|. .|.++.+||.-.+
T Consensus 273 ~~gitSv~FS~SG---------RlLfagy-~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 273 ICGITSVAFSKSG---------RLLFAGY-DDFTCNVWDTLKG 305 (343)
T ss_pred cCCceeEEEcccc---------cEEEeee-cCCceeEeecccc
Confidence 5689999999999 8999998 9999999997544
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=226.40 Aligned_cols=248 Identities=15% Similarity=0.229 Sum_probs=206.8
Q ss_pred ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEe
Q 020107 57 NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGL 124 (331)
Q Consensus 57 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 124 (331)
.+...+++|++.|+.++..+.+ .+.+++++.|.++ +|++...+. |...|..+..+++|++.++++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eeeeeecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 3566779999999999999986 5699999999999 999876432 678899999999999999999
Q ss_pred cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107 125 SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI 204 (331)
Q Consensus 125 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 204 (331)
.|+++++||+.++ ++.+.|.+|...|.+++|+| +...+++|+.|.+|++|+..... ...+.. ..+...|.|+.|+
T Consensus 83 wD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~c-k~t~~~-~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVC-KYTIHE-DSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCC--cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccE-EEEEec-CCCcCcEEEEEEc
Confidence 9999999999998 45888999999999999999 77999999999999999998543 444544 2247899999999
Q ss_pred cCC-CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107 205 PSD-SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK 283 (331)
Q Consensus 205 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (331)
|.. ..+|++++.|++|++||+++. .+...+.+|.+.++.++++||| .+.+.++.++.+.+|++.. ++.+.++ +
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~--~k~lysl-~ 231 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNE--GKNLYSL-E 231 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCc--chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccC--CceeEec-c
Confidence 932 689999999999999999985 3333368999999999999996 6666666777788999988 4556655 4
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
|...|.+++|+|+. +.+... .+..|+|||++++..
T Consensus 232 a~~~v~sl~fspnr----------ywL~~a-t~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNR----------YWLCAA-TATSIKIWDLESKAV 266 (315)
T ss_pred CCCeEeeEEecCCc----------eeEeec-cCCceEEEeccchhh
Confidence 78899999999996 444444 578899999988743
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.4e-38 Score=240.84 Aligned_cols=244 Identities=15% Similarity=0.219 Sum_probs=219.9
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+..+..+|.+.|.++++.|. .++|++|+.|+++ |||+.+++. |...|..+++++...++++++.|+.|+
T Consensus 143 l~rVi~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred ehhhhhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 33456889999999999999 8899999999999 999999876 678899999999999999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
-||++.++. ++.+.+|-..|.+++.+| .-..|++|+.|.++++||+|+...+..+.. |..+|.++.+.| ....
T Consensus 219 CwDLe~nkv--IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~-~dpq 291 (460)
T KOG0285|consen 219 CWDLEYNKV--IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQP-TDPQ 291 (460)
T ss_pred EEechhhhh--HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeec-CCCc
Confidence 999998865 899999999999999999 779999999999999999999988877777 999999999999 6668
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
+++|+.|++|++||++.++.... +..|...|.+++.+|. ..++++++.+.++.|++.. +..+..+.+|+..|..
T Consensus 292 vit~S~D~tvrlWDl~agkt~~t--lt~hkksvral~lhP~--e~~fASas~dnik~w~~p~--g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMIT--LTHHKKSVRALCLHPK--ENLFASASPDNIKQWKLPE--GEFLQNLSGHNAIINT 365 (460)
T ss_pred eEEecCCceEEEeeeccCceeEe--eecccceeeEEecCCc--hhhhhccCCccceeccCCc--cchhhccccccceeee
Confidence 99999999999999999754333 4889999999999999 6677777888889999887 6788889999999999
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++...|+ ++++|+ +.|.+.+||..++..
T Consensus 366 l~~nsD~----------v~~~G~-dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 366 LSVNSDG----------VLVSGG-DNGSIMFWDWKSGHN 393 (460)
T ss_pred eeeccCc----------eEEEcC-CceEEEEEecCcCcc
Confidence 9999996 899999 999999999988743
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-36 Score=239.75 Aligned_cols=273 Identities=17% Similarity=0.334 Sum_probs=230.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+++++|+..+ .+||+|+ .+|.+++|+.... +...+..|.++|.++.|+.. +.+|++++
T Consensus 236 kdVT~L~Wn~~G---~~LatG~----------~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~----G~yilS~~ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDG---TLLATGS----------EDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKK----GTYILSGG 295 (524)
T ss_pred CCcceEEecCCC---CeEEEee----------cCcEEEEEecCch---hhhhhhccCCceEEEEEcCC----CCEEEecc
Confidence 456778887766 8999999 6999999999886 33445789999999999999 99999999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.|+++ +||..++.. |..+...+.|-.+ ..+++.+.|+.|+++.+... .|+.++.+|.++|.++.|+| .+
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~-tg 371 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNP-TG 371 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECC-CC
Confidence 99999 999977643 5555577888643 56899999999999999876 45889999999999999999 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC--------CCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS--------DSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
.+|++++.|++++||......+...+.. |...|+.+.|+|. .+..+++++.|++|++||+..+ .++..
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~ 447 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHT 447 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEe
Confidence 9999999999999999988877777777 9999999999984 2457999999999999999996 66766
Q ss_pred eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
+..|..+|++++|+|++ .++++++.++.+.+|.+.. +++++.+.+ .+.|..+.|+.++ ..|..+-
T Consensus 448 -f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~--~~l~~s~~~-~~~Ifel~Wn~~G---------~kl~~~~- 512 (524)
T KOG0273|consen 448 -LMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKT--GKLVKSYQG-TGGIFELCWNAAG---------DKLGACA- 512 (524)
T ss_pred -eccCCCceEEEEecCCC-cEEEecCCCCeeEeccccc--hheeEeecC-CCeEEEEEEcCCC---------CEEEEEe-
Confidence 57999999999999996 5666666677777777665 678888876 5679999999999 5666666
Q ss_pred CCCeEEEEcCC
Q 020107 315 YDRLLRIWMPE 325 (331)
Q Consensus 315 ~d~~i~iW~~~ 325 (331)
.|+.+++-|+.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 69999998763
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=232.02 Aligned_cols=281 Identities=15% Similarity=0.228 Sum_probs=234.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+|..-|++....|..++|++|+ .|++|+|||+.+++ ++....+|...|..+++|+. ..+|++
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs----------~DrtikIwDlatg~--LkltltGhi~~vr~vavS~r----HpYlFs 210 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGS----------ADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKR----HPYLFS 210 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecC----------CCceeEEEEcccCe--EEEeecchhheeeeeeeccc----CceEEE
Confidence 445554455555555559999999 89999999999996 88888999999999999999 779999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.|+.+ .||+...+. |-+.|+|++.+|.-..|++|+.|.++++||+++.. .+..+.+|..+|..+.+.|
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~- 287 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP- 287 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-
Confidence 9999999 999998765 67899999999999999999999999999999874 4888999999999999998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
-...+++|+.|++|++||++.++....+.. |...|++++.+| ....||+++.|. |+-|++..+..... +.+|.
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~n--lsgh~ 360 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQN--LSGHN 360 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEeeec---ccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhc--ccccc
Confidence 446789999999999999999988777777 999999999999 999999999876 99999988643333 58999
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEee-----cCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYA-----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
+-|.+++.+.| +.+++++..+.+..|+..... .+..++.. ..+..|++.+|...+ ..|+||.
T Consensus 361 ~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg---------~rlit~e- 428 (460)
T KOG0285|consen 361 AIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG---------SRLITGE- 428 (460)
T ss_pred ceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC---------ceEEecc-
Confidence 99999999988 777777777776677765521 12222221 134578889999888 6999999
Q ss_pred CCCeEEEEcCCC
Q 020107 315 YDRLLRIWMPES 326 (331)
Q Consensus 315 ~d~~i~iW~~~~ 326 (331)
.|.+|++|.-++
T Consensus 429 adKtIk~~keDe 440 (460)
T KOG0285|consen 429 ADKTIKMYKEDE 440 (460)
T ss_pred CCcceEEEeccc
Confidence 999999998654
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-35 Score=238.08 Aligned_cols=275 Identities=21% Similarity=0.335 Sum_probs=230.7
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+..++.++.|+|.+ ++|++++ .+|.|++|++.+.. .......|...+..+.|+|+ ++.|++
T Consensus 8 h~~~i~~~~~~~~~---~~l~~~~----------~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~l~~ 68 (289)
T cd00200 8 HTGGVTCVAFSPDG---KLLATGS----------GDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD----GTYLAS 68 (289)
T ss_pred cCCCEEEEEEcCCC---CEEEEee----------cCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC----CCEEEE
Confidence 45677888888875 7999998 79999999998775 34445678888999999999 889999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.+|.+ +|++...+. +...+.++.|+++++++++++.+|.|.+||+.+++. ...+..|...+.+++|+|
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~- 145 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLRGHTDWVNSVAFSP- 145 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEeccCCCcEEEEEEcC-
Confidence 9999999 999987432 456899999999988888888899999999986643 666778888999999998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
++.++++++.++.|++||+++++....+.. |...+.++.|+| ++..+++++.|+.|++||++.. +++.. ...|.
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~-~~~~~-~~~~~ 219 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG-KCLGT-LRGHE 219 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEec---CccccceEEECC-CcCEEEEecCCCcEEEEECCCC-ceecc-hhhcC
Confidence 678888888899999999998877777765 888999999999 8888999999999999999874 44443 34788
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
..+.+++|+|++ .++++++.++.+.+|++.. ++....+..|...+.+++|+|++ .+|++++ .|+.|+
T Consensus 220 ~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~-~d~~i~ 286 (289)
T cd00200 220 NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSLAWSPDG---------KRLASGS-ADGTIR 286 (289)
T ss_pred CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEEEECCCC---------CEEEEec-CCCeEE
Confidence 899999999983 4444444488999999876 46777788899999999999998 6999999 999999
Q ss_pred EEc
Q 020107 321 IWM 323 (331)
Q Consensus 321 iW~ 323 (331)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-36 Score=235.15 Aligned_cols=284 Identities=15% Similarity=0.213 Sum_probs=233.4
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+..|...|-|+.++++|.|||+++ +|.+..+|.+..... .+.....+|..+|..+.|||+ .++|+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaS----------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD----dryLl 285 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASAS----------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD----DRYLL 285 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeecc----------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCC----CCeEE
Confidence 456788888888888889999999 899999999865542 356667899999999999999 89999
Q ss_pred EEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEee
Q 020107 87 QADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSF 157 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~ 157 (331)
+++.+..+ +||+.++.. +...+.+++|.|||..+++|+.|+++..||++.+. ...+++ ....|.+++.
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~---~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI---LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch---hhcccccccceeEEEEE
Confidence 99999888 999998765 34678899999999999999999999999998643 233332 2356999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV 237 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 237 (331)
.+ ++..+++.+.|..|++++..+......+.. ..+|++++.+. +++++++.-.+..+++||+.....+.. ..
T Consensus 363 t~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~k--Y~ 434 (519)
T KOG0293|consen 363 TY-DGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRK--YF 434 (519)
T ss_pred cC-CCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHH--hh
Confidence 98 888888889999999999988765555554 67899999999 999999999999999999996433222 36
Q ss_pred ecCCc--eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 238 CLGGG--VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 238 ~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
+|... +-.-+|-...+.++++++.|+.+++|+... ++++.++.||...|.+++|+|..+ .++||+| +
T Consensus 435 Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--gkll~~LsGHs~~vNcVswNP~~p--------~m~ASas-D 503 (519)
T KOG0293|consen 435 GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--GKLLAVLSGHSKTVNCVSWNPADP--------EMFASAS-D 503 (519)
T ss_pred cccccceEEEeccCCCCcceEEecCCCceEEEEEccC--CceeEeecCCcceeeEEecCCCCH--------HHhhccC-C
Confidence 66554 444556555435565666677888888766 799999999999999999999998 8999999 9
Q ss_pred CCeEEEEcCCCc
Q 020107 316 DRLLRIWMPESD 327 (331)
Q Consensus 316 d~~i~iW~~~~~ 327 (331)
||+||||.+...
T Consensus 504 DgtIRIWg~~~~ 515 (519)
T KOG0293|consen 504 DGTIRIWGPSDN 515 (519)
T ss_pred CCeEEEecCCcc
Confidence 999999998754
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=242.53 Aligned_cols=234 Identities=20% Similarity=0.271 Sum_probs=210.5
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ 138 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 138 (331)
..+|..+.|.|+ |+.|++|+..|.. +|+..... .|.++|.++.|++++.++++|+.+|.|++|+..-..
T Consensus 96 kc~V~~v~WtPe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCC----CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 346999999999 9999999999999 99987643 489999999999999999999999999999987643
Q ss_pred eeeeeeeeccc-ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 139 LEVLQQWKAHE-FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 139 ~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
++.++.|. ..|++++|+| +...|+++++||+|+|||.+..+...++.. |.-.|.+++|+| ...++++++.|
T Consensus 172 ---Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~G---HgwdVksvdWHP-~kgLiasgskD 243 (464)
T KOG0284|consen 172 ---VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRG---HGWDVKSVDWHP-TKGLIASGSKD 243 (464)
T ss_pred ---hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheecc---CCCCcceeccCC-ccceeEEccCC
Confidence 45555554 8999999999 678899999999999999999887777776 999999999999 88899999999
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
..|++||.+++ .++.. +..|...|..+.|+|++ ..|++++.|..+++++++. .+.++++++|+..|+++.|+|-.
T Consensus 244 nlVKlWDprSg-~cl~t-lh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~--mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 244 NLVKLWDPRSG-SCLAT-LHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT--MKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred ceeEeecCCCc-chhhh-hhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH--hHHHHHhhcchhhheeecccccc
Confidence 99999999997 44444 48999999999999998 8899999999999999995 58889999999999999999998
Q ss_pred CcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 298 SSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+ .+|++|| .||.|..|.+.
T Consensus 319 ~--------~lftsgg-~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 319 E--------SLFTSGG-SDGSVVHWVVG 337 (464)
T ss_pred c--------cceeecc-CCCceEEEecc
Confidence 7 8999999 99999999986
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-34 Score=234.17 Aligned_cols=285 Identities=18% Similarity=0.257 Sum_probs=225.2
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+.++.|-|..| -++++|+ +|+.|.+|+=...+ ++...+.|..-|++++|+|+ +.++++++.|
T Consensus 150 ins~~~KpsRP--fRi~T~s----------dDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysPD----G~~Fat~gsD 211 (603)
T KOG0318|consen 150 INSVDFKPSRP--FRIATGS----------DDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSPD----GSRFATAGSD 211 (603)
T ss_pred EeeeeccCCCc--eEEEecc----------CCCeEEEeeCCCee--eeecccccccceeeEEECCC----CCeEEEecCC
Confidence 44555555555 6899998 89999999866653 67777889999999999999 9999999999
Q ss_pred ccE-EEecCC---------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce----------------------
Q 020107 92 GGL-LRDITG---------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---------------------- 139 (331)
Q Consensus 92 g~i-iw~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------- 139 (331)
|++ ++|-.+ ...|++.|.+++|+||+..+++++.|.+++|||+.+.++
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 999 665444 445899999999999999999999999999999986421
Q ss_pred -------------------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee-----------e
Q 020107 140 -------------------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF-----------Q 189 (331)
Q Consensus 140 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~ 189 (331)
.+++.+.+|...|+++..+| ++.+|++|+.||.|.-||+.++..-+.. .
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 12333567999999999999 7799999999999999999765432110 0
Q ss_pred -----------------------------------------------------------ccc--------CCCcceEEEE
Q 020107 190 -----------------------------------------------------------NSK--------IHKMGVCCIA 202 (331)
Q Consensus 190 -----------------------------------------------------------~~~--------~~~~~v~~~~ 202 (331)
..+ .-.....+++
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 000 0012245778
Q ss_pred EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
++| ++..+++|+.|+.|++|.+......-......|.++|+.++++|++ .+|+++-..+.+.+|++..... ....+.
T Consensus 451 v~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~ 527 (603)
T KOG0318|consen 451 VSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWA 527 (603)
T ss_pred EcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceee
Confidence 889 9999999999999999999875433332457999999999999996 5666665677788888877522 444455
Q ss_pred cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
-|+..|.+++|+|+. .++|||+ .|-.|.||+++...
T Consensus 528 FHtakI~~~aWsP~n---------~~vATGS-lDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNN---------KLVATGS-LDTNVIIYSVKKPA 563 (603)
T ss_pred eeeeeEEEEEeCCCc---------eEEEecc-ccceEEEEEccChh
Confidence 699999999999999 7999999 99999999998653
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.3e-35 Score=228.03 Aligned_cols=269 Identities=20% Similarity=0.258 Sum_probs=232.1
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK- 102 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~- 102 (331)
..+.+|+| ||.+++|+.... ......+|.++|.+++|.-.++. ...|++++.|.++ +|.++.+.
T Consensus 116 ~~IltgsY----------Dg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~-~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 116 KWILTGSY----------DGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSS-SCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred ceEEEeec----------CCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCc-cceEEEecCCceEEEEEecCchh
Confidence 78999996 999999999886 44555899999999998766443 4579999999999 88776543
Q ss_pred ---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----------------------cceeeeeeeecccc
Q 020107 103 ---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----------------------SQLEVLQQWKAHEF 150 (331)
Q Consensus 103 ---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----------------------~~~~~~~~~~~~~~ 150 (331)
.|...|-+++..+++..+++|+.|.+|.+|+... +...++..+.+|..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 3789999999999999999999999999999321 12345677889999
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 230 (331)
+|.++.|++ ...+++++.|.+|+.||+.++.....+.. ...+.++.++| ..++|++|+.|..|++||.|++..
T Consensus 262 ~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 262 PVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec----CcceeEeeccc-ccceeeecCCCCceeecCCCCCCC
Confidence 999999986 57899999999999999999998777775 77899999999 999999999999999999998643
Q ss_pred -CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107 231 -PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 231 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
.+...+.+|...|.++.|+|....++++++.|+.+++|+++.. ..++..+.+|...|.+++|.... +|
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h~DKvl~vdW~~~~----------~I 403 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGHNDKVLSVDWNEGG----------LI 403 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccCCceEEEEeccCCc----------eE
Confidence 3444578999999999999999888888899999999999986 45888999999999999999885 89
Q ss_pred EEeecCCCeEEEEcCCC
Q 020107 310 ATCSFYDRLLRIWMPES 326 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~~~ 326 (331)
+||| .|.+|+|+.-..
T Consensus 404 vSGG-aD~~l~i~~~~~ 419 (423)
T KOG0313|consen 404 VSGG-ADNKLRIFKGSP 419 (423)
T ss_pred Eecc-CcceEEEecccc
Confidence 9999 999999997543
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.8e-35 Score=226.59 Aligned_cols=279 Identities=18% Similarity=0.199 Sum_probs=233.0
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+...+.+|+.+|.. +++|+|+ .|....||++.+++ ......+|...|+++.|+.+ +.+||+
T Consensus 63 H~~svFavsl~P~~---~l~aTGG----------gDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshd----gtlLAT 123 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNN---NLVATGG----------GDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHD----GTLLAT 123 (399)
T ss_pred cCCceEEEEeCCCC---ceEEecC----------CCceEEEEEccCCc--ceeEecCCCCceEEEEEccC----ceEEEe
Confidence 45567788888854 8999998 89999999999987 44555899999999999999 999999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
|+.+|.+ +|...++.. .-..+.-+.|+|.+..|++|+.||.+.+|.+.++. ..+.+.+|..++++-.|.|
T Consensus 124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--~~kv~~Gh~~~ct~G~f~p- 200 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--LCKVMSGHNSPCTCGEFIP- 200 (399)
T ss_pred cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--eeeEecCCCCCcccccccC-
Confidence 9999999 999887654 23456678899999999999999999999998763 3678899999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecc------------------------------------------------c
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS------------------------------------------------K 192 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------------~ 192 (331)
+++.++++..||+|++|++.++++...+... +
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 7999999999999999999998765443310 0
Q ss_pred CCCcceEEEEEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 193 IHKMGVCCIASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 193 ~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
.+...+.|+.+.|. .-.+.|+|+.||+|.|||+... ++... ..|..+|..+.|-++ ..+++++.++.++.|+.
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~~--c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRHI--CEHEDGVTKLKWLNT--DYLLTACANGKVRQWDA 355 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccc-hhhee--ccCCCceEEEEEcCc--chheeeccCceEEeeec
Confidence 11122223333331 3357899999999999999984 55554 789999999999995 78999999999999998
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+. ++++.++.||...|.+++++|+. ++++|+| .|++.+|+++.
T Consensus 356 Rt--G~l~~~y~GH~~~Il~f~ls~~~---------~~vvT~s-~D~~a~VF~v~ 398 (399)
T KOG0296|consen 356 RT--GQLKFTYTGHQMGILDFALSPQK---------RLVVTVS-DDNTALVFEVP 398 (399)
T ss_pred cc--cceEEEEecCchheeEEEEcCCC---------cEEEEec-CCCeEEEEecC
Confidence 87 79999999999999999999998 7999999 99999999875
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=221.62 Aligned_cols=277 Identities=17% Similarity=0.273 Sum_probs=223.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+++.++.++|.|.+ .+||+|+ .|..|.+|++....+....+ ++|.++|..+.|.++ +..|++
T Consensus 46 h~geI~~~~F~P~g---s~~aSgG----------~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d----~s~i~S 107 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDG---SCFASGG----------SDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD----GSHILS 107 (338)
T ss_pred CcceEEEEEECCCC---CeEeecC----------CcceEEEEeccccccceeee-ccccceeEeeeeccC----CCEEEE
Confidence 45567777777755 8999999 69999999987765455554 799999999999999 999999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
++.|.++ .||.++++. |..-++++.-+.-|. ++.+++.||++++||+++.. +++.+. ....++++.|..
T Consensus 108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~-~kyqltAv~f~d 184 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFE-NKYQLTAVGFKD 184 (338)
T ss_pred ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhccc-cceeEEEEEecc
Confidence 9999999 999998765 567777777444454 46777889999999999764 366554 456799999994
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC--CCceeeee
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS--KPVNETSV 237 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~ 237 (331)
.+..+.+|+-|+.|++||++.......+.. |.+.|+.+..+| ++.++.+-+.|.++++||++... +....++.
T Consensus 185 -~s~qv~sggIdn~ikvWd~r~~d~~~~lsG---h~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 185 -TSDQVISGGIDNDIKVWDLRKNDGLYTLSG---HADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred -cccceeeccccCceeeeccccCcceEEeec---ccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEee
Confidence 888999999999999999999988888887 999999999999 99999999999999999998741 11111233
Q ss_pred ec----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 238 CL----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 238 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
+| ......++|+|++ ..+-+++.+..+++|+... ...+..+.||.+.|..++|+|.. .+|.+++
T Consensus 260 g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~--r~~lyklpGh~gsvn~~~Fhp~e---------~iils~~ 327 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTS--RRILYKLPGHYGSVNEVDFHPTE---------PIILSCS 327 (338)
T ss_pred cchhhhhhhcceeeccCCC-CccccccccceEEEeeccc--ccEEEEcCCcceeEEEeeecCCC---------cEEEEec
Confidence 33 2345678999995 4444555566666676655 47888999999999999999998 5999999
Q ss_pred cCCCeEEEEc
Q 020107 314 FYDRLLRIWM 323 (331)
Q Consensus 314 ~~d~~i~iW~ 323 (331)
.|.+|++=.
T Consensus 328 -sdk~i~lge 336 (338)
T KOG0265|consen 328 -SDKTIYLGE 336 (338)
T ss_pred -cCceeEeec
Confidence 899998743
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.9e-35 Score=243.46 Aligned_cols=281 Identities=15% Similarity=0.240 Sum_probs=235.6
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.++..+.|+..+ +.||.|+ .+-|.+.||+..... ...-+.+|...+++++++|+ ++++|+|+
T Consensus 308 ~~I~t~~~N~tG---DWiA~g~---------~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpD----gq~iaTG~ 369 (893)
T KOG0291|consen 308 QKILTVSFNSTG---DWIAFGC---------SKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPD----GQLIATGA 369 (893)
T ss_pred ceeeEEEecccC---CEEEEcC---------CccceEEEEEeeccc--eeeeccccccceeeEEECCC----CcEEEecc
Confidence 456677776666 8999998 356899999999875 55556789999999999999 99999999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQ 161 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 161 (331)
.||++ +|+...+-+ |.+.|+.+.|+..++.+++++-||+|+.||+...+. .+++.. ......|++..| .
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN--fRTft~P~p~QfscvavD~-s 446 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN--FRTFTSPEPIQFSCVAVDP-S 446 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce--eeeecCCCceeeeEEEEcC-C
Confidence 99999 999988644 899999999999999999999999999999987643 666653 234467888888 7
Q ss_pred CcEEEEEcCCC-eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 162 PHMVYTGSDDC-KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 162 ~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
+.++++|+.|. .|.+|++.+|+.+..+.. |.++|.+++|+| .+..|++++.|.+||+||+-.....+.. ..+.
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsG---HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEt--l~i~ 520 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSG---HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVET--LEIR 520 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcC---CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeee--Eeec
Confidence 88898888876 699999999998888877 999999999999 9999999999999999999876556666 7788
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe----------------e----cCCcceeeeeecCCCCcc
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY----------------A----KHGSLAYGADWQRGRSSL 300 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----~h~~~v~~~~~~~~~~~~ 300 (331)
..+..++|+|+| ..++++..++.|.+|++.... .+.++ . ......+.+++++||
T Consensus 521 sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~--q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG--- 594 (893)
T KOG0291|consen 521 SDVLAVSFRPDG-KELAVATLDGQITFFDIKEAV--QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG--- 594 (893)
T ss_pred cceeEEEEcCCC-CeEEEEEecceEEEEEhhhce--eeccccchhhccccccccceeehhhcccCCceEEEEEcCCC---
Confidence 899999999998 667777788999999986631 11111 1 223578899999999
Q ss_pred cccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 301 EGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 301 ~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
..|++|| ....|++|++.++.+.
T Consensus 595 ------~~IlAgG-~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 595 ------KCILAGG-ESNSICIYDVPEGVLL 617 (893)
T ss_pred ------CEEEecC-CcccEEEEECchhhee
Confidence 6999999 9999999999998764
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.4e-35 Score=214.17 Aligned_cols=261 Identities=14% Similarity=0.199 Sum_probs=218.9
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
++++..++..|+. ..||+|+ ...|++||+.+.+......+.+|+..|+++.|..+ ++.+++|
T Consensus 40 dsqVNrLeiTpdk---~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----grWMyTg 101 (311)
T KOG0315|consen 40 DSQVNRLEITPDK---KDLAAAG-----------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----GRWMYTG 101 (311)
T ss_pred ccceeeEEEcCCc---chhhhcc-----------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeec----CeEEEec
Confidence 5677778777776 8999997 88999999998875456667999999999999999 9999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
++||++ |||++...+ +.++|+++..+|+...|++|..+|.|++||+.+...... .+......|.++...| ++
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~-dg 179 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMP-DG 179 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cCCCCCcceeeEEEcC-CC
Confidence 999999 999998654 579999999999999999999999999999988643221 1233456899999998 89
Q ss_pred cEEEEEcCCCeEEEEEccCCCcee---eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKL---AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
.+++.+...|.+++|++-+..... .+..++.|...+..+.++| +.++|++++.|.+++||+.... -.+...+.+|
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-~kle~~l~gh 257 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH 257 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc-eeeEEEeecC
Confidence 999999999999999998654322 2222456999999999999 9999999999999999999986 3444446889
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
...++..+||.++ .++++++++...++|++.. ++.+..+.+|.....+++..
T Consensus 258 ~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~--~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 258 QRWVWDCAFSADG-EYLVTASSDHTARLWDLSA--GKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CceEEeeeeccCc-cEEEecCCCCceeeccccc--CceeeecCCcccccEEEEee
Confidence 9999999999998 7888888888888888887 68888999998877776643
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=246.31 Aligned_cols=292 Identities=17% Similarity=0.296 Sum_probs=232.4
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
+..+++|+..++|.|.+ .+||+|+ .||.++|||+..+. ....+++|.+.|.++.|+|+.. ...
T Consensus 101 Ka~He~Pvi~ma~~~~g---~LlAtgg----------aD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~--~~l 163 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG---TLLATGG----------ADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWN--RWL 163 (775)
T ss_pred hhccCCCeEEEEEcCCC---ceEEecc----------ccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccc--hhh
Confidence 34568899999999988 8999998 89999999999886 5566688999999999998742 346
Q ss_pred EEEEcCCccE-EEecCCCcc-------c----------------------------------------------------
Q 020107 85 LAQADADGGL-LRDITGEKI-------S---------------------------------------------------- 104 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~-------~---------------------------------------------------- 104 (331)
|++|..|+.+ +|++..... |
T Consensus 164 L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 164 LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 7888888887 676652111 1
Q ss_pred --------------------------------------------------------------------------------
Q 020107 105 -------------------------------------------------------------------------------- 104 (331)
Q Consensus 105 -------------------------------------------------------------------------------- 104 (331)
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence
Q ss_pred -----------------------------------------CccEEEEEEcCCCCeEEEEecCCeEEEEEcccc--ceee
Q 020107 105 -----------------------------------------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVES--QLEV 141 (331)
Q Consensus 105 -----------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~ 141 (331)
...|.++....+|-+|++|+.|.++++|.++.+ +..+
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~ 403 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC 403 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh
Confidence 122334442234557777888888888877432 2334
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---eeeee---cccCCCcceEEEEEecCCCCEEEEEe
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---KLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
+....+|...|.+++++.....+|++++.|+++++|++...+. ...+. ....|...|++++++| +..++|||+
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~S 482 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGS 482 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecc
Confidence 5556789999999999876778999999999999999987221 11121 1245999999999999 999999999
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
.|.+.+||++.+. + +.-.+.+|...|+++.|+|.. ..++++++|.++++|.+.+ ..+++++.||+..|..+.|-.
T Consensus 483 qDktaKiW~le~~-~-l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~--fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 483 QDKTAKIWDLEQL-R-LLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSIST--FSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred cccceeeecccCc-e-EEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEecc--ceeeeeecCccceeEeeeeee
Confidence 9999999999953 3 344478999999999999986 7788888899999999998 599999999999999999999
Q ss_pred CCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++ ..|+|++ .||.|++|++.++..
T Consensus 558 ~~---------~qliS~~-adGliKlWnikt~eC 581 (775)
T KOG0319|consen 558 NG---------KQLISAG-ADGLIKLWNIKTNEC 581 (775)
T ss_pred CC---------cEEEecc-CCCcEEEEeccchhh
Confidence 99 6999999 999999999998753
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=240.70 Aligned_cols=285 Identities=18% Similarity=0.262 Sum_probs=234.2
Q ss_pred eeecCcceeEeeecCCC-CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 6 CELDGNADAVEFCPQDS-YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~-~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
+.+.||...|.+..+.| .+.+|++++ .|+.|+||++-... .+...+.+|..+|.+++|++. +..
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~g----------mD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~----g~~ 272 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGG----------MDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNC----GTS 272 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecC----------CCceEEEEEEecCc-ceehhhhcchhhhhhhhcccc----CCe
Confidence 34566655444444333 337999998 79999999998855 344455899999999999999 999
Q ss_pred EEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107 85 LAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF 157 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 157 (331)
+++++.|+.+ +||.+++++. ...++|+.|+|++ +.+++|+.|+.|+.||++++++ +.++..|-+.|..+.|
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGAILDITF 350 (503)
T ss_pred eeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhheeeeEE
Confidence 9999999999 9999999873 5678999999998 7799999999999999999975 8888889999999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-Cceeee
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-PVNETS 236 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~ 236 (331)
-+ ++..+++.++|+.++||+.+.+..+..+... +.....++..+| ++.+++.-+.|+.|.+|.+...-+ .....+
T Consensus 351 ~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 351 VD-EGRRFISSSDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred cc-CCceEeeeccCccEEEEEcCCCccchhhcch--hhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhh
Confidence 98 8899999999999999999988665544432 344567889999 999999999999999998765311 111223
Q ss_pred eecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 237 VCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 237 ~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
.+|. +--..+.||||+ .+++++.+++.+.+|+... .+++..++.|.+++..+.|+|..+ ..+||||
T Consensus 427 eGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt--~kl~~~lkah~~~ci~v~wHP~e~--------Skvat~~- 494 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKT--TKLVSKLKAHDQPCIGVDWHPVEP--------SKVATCG- 494 (503)
T ss_pred cceeccCceeeEEEcCCC-CeEEeecCCccEEEeechh--hhhhhccccCCcceEEEEecCCCc--------ceeEecc-
Confidence 4553 446678999997 7777777888888888776 488889999999999999999987 8999999
Q ss_pred CCCeEEEEc
Q 020107 315 YDRLLRIWM 323 (331)
Q Consensus 315 ~d~~i~iW~ 323 (331)
.||.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=245.14 Aligned_cols=277 Identities=14% Similarity=0.175 Sum_probs=234.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..+.|. +|..++||+++ ..+.+++|++.+.. . .+..+|+..|.++....+ +.+|++|+.
T Consensus 325 EI~Dm~~l--G~e~~~laVAT----------Ns~~lr~y~~~~~~--c-~ii~GH~e~vlSL~~~~~----g~llat~sK 385 (775)
T KOG0319|consen 325 EILDMKFL--GPEESHLAVAT----------NSPELRLYTLPTSY--C-QIIPGHTEAVLSLDVWSS----GDLLATGSK 385 (775)
T ss_pred hheeeeec--CCccceEEEEe----------CCCceEEEecCCCc--e-EEEeCchhheeeeeeccc----CcEEEEecC
Confidence 34444443 44458999999 79999999888864 3 366999999999996666 779999999
Q ss_pred CccE-EEecCCC----------cccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccce---eeee----eeecccce
Q 020107 91 DGGL-LRDITGE----------KISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQL---EVLQ----QWKAHEFE 151 (331)
Q Consensus 91 dg~i-iw~~~~~----------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~~~ 151 (331)
|.++ +|.++.. ..|...|.+++++..+ .+|++++.|+++++|++...+. .... ....|+..
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 9999 9988432 2378889999997655 5689999999999999986211 1111 23579999
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
|++++.+| +..++++|+.|.+.+||++........+.. |...|.++.|+| ..+.++|++.|++|+||.+.+. .+
T Consensus 466 IN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsG---H~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~f-SC 539 (775)
T KOG0319|consen 466 INCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSG---HTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTF-SC 539 (775)
T ss_pred ccceEecC-CCceEEecccccceeeecccCceEEEEeeC---CccceEEEEecc-ccceeEeccCCceEEEEEeccc-ee
Confidence 99999999 779999999999999999997776777776 999999999999 8899999999999999999996 56
Q ss_pred ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
+.+ +.+|...|..+.|-.++ ..++++++++-+++|++.. ..++.++.+|++.|++++.+|.. .+++|
T Consensus 540 lkT-~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~---------~~~~t 606 (775)
T KOG0319|consen 540 LKT-FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLL---------DMFVT 606 (775)
T ss_pred eee-ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCcc---------ceeEe
Confidence 665 68899999999999987 7889999999999999988 58999999999999999999998 69999
Q ss_pred eecCCCeEEEEcCCC
Q 020107 312 CSFYDRLLRIWMPES 326 (331)
Q Consensus 312 ~~~~d~~i~iW~~~~ 326 (331)
|+ .||.|.+|.=.+
T Consensus 607 gg-~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 607 GG-GDGRIIFWKDVT 620 (775)
T ss_pred cC-CCeEEEEeecCc
Confidence 99 999999997443
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-34 Score=212.31 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=205.4
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcCCCCeEEEEecCCe
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNPSATSITVGLSDGS 128 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~ 128 (331)
....+|.+.+..++|+|.. |..||+++.|..+ +|+.... ..|+..|.+++|+|.|++|++|+.|.+
T Consensus 8 ~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 3457899999999999984 5689999999999 9998842 237899999999999999999999999
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 208 (331)
+.||.-..+.++++..+.+|+..|.+++|++ ++++|+++++|..|-||.+............++|...|..+.|+| ..
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~ 162 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TE 162 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cc
Confidence 9999999999999999999999999999998 899999999999999999986554333333344999999999999 99
Q ss_pred CEEEEEecCCeEEEEEecC-CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107 209 NTLLTGSYDEYLRVWDVRS-ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL 287 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 287 (331)
.+|+++++|.+|++|+-.. ..-.....+.+|...|++++|+|.+ ..+++++.+..+++|..... .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC------cchhcccc
Confidence 9999999999999998773 2223333467899999999999997 67777778888888886532 12247789
Q ss_pred eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++.+.|. ++ .|+|++ .|+.|+++.-..
T Consensus 236 ~Y~v~W~-~~----------~IaS~g-gD~~i~lf~~s~ 262 (312)
T KOG0645|consen 236 LYDVPWD-NG----------VIASGG-GDDAIRLFKESD 262 (312)
T ss_pred eEeeeec-cc----------ceEecc-CCCEEEEEEecC
Confidence 9999999 54 899999 999999998664
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=246.56 Aligned_cols=279 Identities=21% Similarity=0.342 Sum_probs=226.7
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.++.|++.+ ++|++++ .++.+++|+.......+.....+|...|++++|+|+ ++++++++.
T Consensus 161 sv~~~~fs~~g---~~l~~~~----------~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----~~~l~s~s~ 223 (456)
T KOG0266|consen 161 SVTCVDFSPDG---RALAAAS----------SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----GSYLLSGSD 223 (456)
T ss_pred ceEEEEEcCCC---CeEEEcc----------CCCcEEEeecccccchhhccccccccceeeeEECCC----CcEEEEecC
Confidence 34445555554 8899997 799999999955431123333789999999999999 999999999
Q ss_pred CccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 91 DGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 91 dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
|+++ +|++... +.|...|++++|+|+++.+++|+.|++|++||+++++ ++..+.+|...|++++|++ ++
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~ 300 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DG 300 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CC
Confidence 9999 9999332 2388999999999999999999999999999999874 4889999999999999998 88
Q ss_pred cEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 163 HMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
++|++++.|+.|++||+.++. +...+....... .++++.|+| ++.++++++.|+.+++||++....+... ..|.
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~--~~~~ 376 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY--TGHS 376 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee--cccC
Confidence 999999999999999999998 345555422122 699999999 9999999999999999999986444443 5665
Q ss_pred Cc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeec-C
Q 020107 241 GG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSF-Y 315 (331)
Q Consensus 241 ~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~ 315 (331)
.. +.+...++.+ ..+++++.+..+.+|++.. ...+..+.+| ...+..+.++|.. +++++++. .
T Consensus 377 ~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h~~~~~~~~~~~~~~---------~~~~s~s~~~ 444 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSS--GGILQRLEGHSKAAVSDLSSHPTE---------NLIASSSFEG 444 (456)
T ss_pred CcceeEecccccCCC-CeEEEEeCCceEEEEeCCc--cchhhhhcCCCCCceeccccCCCc---------CeeeecCcCC
Confidence 53 4444555664 6777777888888888877 5778888899 8999999999998 68888862 4
Q ss_pred CCeEEEEcCC
Q 020107 316 DRLLRIWMPE 325 (331)
Q Consensus 316 d~~i~iW~~~ 325 (331)
|+.+++|..+
T Consensus 445 d~~~~~w~~~ 454 (456)
T KOG0266|consen 445 DGLIRLWKYD 454 (456)
T ss_pred CceEEEecCC
Confidence 8899999865
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-34 Score=238.48 Aligned_cols=280 Identities=18% Similarity=0.289 Sum_probs=225.9
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.+|.|+.++ ++|++|+ +|-.+++|.++..+......+.+|...|-+.-|..+ ...+.+.+.
T Consensus 147 di~si~Ws~DS---r~l~~gs----------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~----~~~l~tvsk 209 (893)
T KOG0291|consen 147 DITSIDWSDDS---RLLVTGS----------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN----SLDLYTVSK 209 (893)
T ss_pred ceeEEEeccCC---ceEEecc----------ccceEEEEEeccccccceEeccCCCcceEEEEeccC----cceEEEEec
Confidence 35566676666 8999998 899999999998775556677899999999999998 778999999
Q ss_pred CccE-EEecCC------------------------Cc-c-------------------------c---------------
Q 020107 91 DGGL-LRDITG------------------------EK-I-------------------------S--------------- 104 (331)
Q Consensus 91 dg~i-iw~~~~------------------------~~-~-------------------------~--------------- 104 (331)
||.+ +|.... .+ . |
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 9999 887651 11 0 0
Q ss_pred -----------------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107 105 -----------------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY 166 (331)
Q Consensus 105 -----------------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (331)
..+|..++|+..|..||.|+. -|++.+|+...... +...++|...+++++++| ++++++
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSp-Dgq~ia 366 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSP-DGQLIA 366 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECC-CCcEEE
Confidence 233455566666666666665 36777777766543 666788999999999999 899999
Q ss_pred EEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107 167 TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI 246 (331)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 246 (331)
+|+.||.|+|||..++-|...|.. |+..|+.+.|+. .++.+++.+.||+|+.||+... +...++..+..-...++
T Consensus 367 TG~eDgKVKvWn~~SgfC~vTFte---Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFVTFTE---HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCV 441 (893)
T ss_pred eccCCCcEEEEeccCceEEEEecc---CCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEE
Confidence 999999999999999999999988 999999999999 9999999999999999999874 55555334445556788
Q ss_pred EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+..|. +.++++|..+...|+-+...+++++..+.||+++|.+++|+|.+ ..|+|+| +|.+||+||+-.
T Consensus 442 avD~s--GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~---------~~LaS~S-WDkTVRiW~if~ 509 (893)
T KOG0291|consen 442 AVDPS--GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG---------SLLASGS-WDKTVRIWDIFS 509 (893)
T ss_pred EEcCC--CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc---------CeEEecc-ccceEEEEEeec
Confidence 88888 56677776666544443344489999999999999999999999 6999999 999999999854
Q ss_pred c
Q 020107 327 D 327 (331)
Q Consensus 327 ~ 327 (331)
.
T Consensus 510 s 510 (893)
T KOG0291|consen 510 S 510 (893)
T ss_pred c
Confidence 3
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=218.57 Aligned_cols=279 Identities=14% Similarity=0.167 Sum_probs=237.7
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
..++-.++|+|.-|+|-+|++++ +||.-.+-+-+++. ..-.+.+|.++|+....+.+ ...-|++
T Consensus 14 trpvvdl~~s~itp~g~flisa~----------kd~~pmlr~g~tgd--wigtfeghkgavw~~~l~~n----a~~aasa 77 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISAS----------KDGKPMLRNGDTGD--WIGTFEGHKGAVWSATLNKN----ATRAASA 77 (334)
T ss_pred CcceeEEeccCCCCCceEEEEec----------cCCCchhccCCCCC--cEEeeeccCcceeeeecCch----hhhhhhh
Confidence 44678899999999999999998 78888877777665 55556899999999999888 7788899
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+.|-+. +|+.-++.. |+..|.+++|+.|.++|++|+.+..+++||++..+ .+..++.+|.+.|..+.|.. ..
T Consensus 78 aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~-eD 155 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCH-ED 155 (334)
T ss_pred cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEec-cC
Confidence 988888 999877653 67889999999999999999999999999999866 45678899999999999996 77
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
+.|++.+.|++||+||.+++...+.+.. ..+|+++.+++ ++.+|.++ ..+.|++||..+. .++.. ......
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf-~~lKs--~k~P~n 226 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSF-GLLKS--YKMPCN 226 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEec----CCCCcceeecc-CCCEEEEe-cCceeEEeccccc-cceee--ccCccc
Confidence 8888889999999999999998888886 78899999999 88765554 6788999999986 55665 667778
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
|.+...+|+. +.+++++.+..++.++... ++.+..+ ++|.++|-++.|+|++ ...++|+ +||+|++
T Consensus 227 V~SASL~P~k-~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdG---------E~yAsGS-EDGTirl 293 (334)
T KOG0278|consen 227 VESASLHPKK-EFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDG---------ELYASGS-EDGTIRL 293 (334)
T ss_pred cccccccCCC-ceEEecCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCC---------ceeeccC-CCceEEE
Confidence 9999999997 7888887777755566555 6777775 8999999999999999 5999999 9999999
Q ss_pred EcCCCc
Q 020107 322 WMPESD 327 (331)
Q Consensus 322 W~~~~~ 327 (331)
|.+..+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998654
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-33 Score=257.51 Aligned_cols=280 Identities=16% Similarity=0.205 Sum_probs=218.1
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---c--eEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---N--LELLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
.+.+.+++|+|.+ ++||+|+ .|+.|+||++..... . .......+...|.+++|+|.. +.
T Consensus 483 ~~~V~~i~fs~dg---~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~ 546 (793)
T PLN00181 483 SNLVCAIGFDRDG---EFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI---KS 546 (793)
T ss_pred CCcEEEEEECCCC---CEEEEEe----------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC---CC
Confidence 4457778888766 8999998 799999999754210 0 011112345679999999863 67
Q ss_pred eEEEEcCCccE-EEecCCCc------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 84 FLAQADADGGL-LRDITGEK------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+|++++.||.+ +|++.+.+ .|...|++++|+| ++.+|++|+.||.|++||++++.. +..+..+ ..+.++
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~-~~v~~v 623 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTK-ANICCV 623 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecC-CCeEEE
Confidence 99999999999 99998754 3788999999997 788999999999999999987654 5566544 578999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-----
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS----- 229 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----- 229 (331)
.|++.++.++++|+.||.|++||+++.+. ...+.. |...|.++.|. ++.+|++++.|++|++||++...
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 99766789999999999999999987652 334444 99999999996 57799999999999999998531
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-----------EeecCCcceeeeeecCCCC
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-----------TYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~~~~~~ 298 (331)
.++.. +.+|...+..++|+|++ .++++++.++.+.+|+.......... ....|...|.+++|+|++
T Consensus 699 ~~l~~-~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~- 775 (793)
T PLN00181 699 TPLHS-FMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS- 775 (793)
T ss_pred cceEE-EcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-
Confidence 33443 56889999999999986 67777778888888886542111111 123456679999999998
Q ss_pred cccccccCcEEEEeecCCCeEEEEcC
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.+|++++ .||.|+||++
T Consensus 776 --------~~lva~~-~dG~I~i~~~ 792 (793)
T PLN00181 776 --------STLVAAN-STGNIKILEM 792 (793)
T ss_pred --------CeEEEec-CCCcEEEEec
Confidence 6999999 9999999986
No 38
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=238.68 Aligned_cols=273 Identities=21% Similarity=0.303 Sum_probs=231.6
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
...-+.|+.. +.||+|. ...|++|+..... +..+...+...|+++.|+++ +.+|++|..
T Consensus 179 Y~nlldWss~----n~laVal-----------g~~vylW~~~s~~--v~~l~~~~~~~vtSv~ws~~----G~~LavG~~ 237 (484)
T KOG0305|consen 179 YLNLLDWSSA----NVLAVAL-----------GQSVYLWSASSGS--VTELCSFGEELVTSVKWSPD----GSHLAVGTS 237 (484)
T ss_pred hhhHhhcccC----CeEEEEe-----------cceEEEEecCCCc--eEEeEecCCCceEEEEECCC----CCEEEEeec
Confidence 3344566633 6899996 7899999998885 55565666788999999999 999999999
Q ss_pred CccE-EEecCCCc------c-cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 91 DGGL-LRDITGEK------I-SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 91 dg~i-iw~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+|.+ |||....+ . |...|-+++|+ +..+.+|+.++.|..+|++..+.. ...+.+|...|..++|++ ++
T Consensus 238 ~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~-d~ 313 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSP-DG 313 (484)
T ss_pred CCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeEECC-CC
Confidence 9999 99976543 3 78899999997 678999999999999999986532 235889999999999998 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecC
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
.++++|+.|+.+.|||.........+.. |.+.|.+++|+|....+||+|+ .|++|++||..++ ..+.. ..-.
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~---H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~--vdtg 387 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFTFTE---HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDS--VDTG 387 (484)
T ss_pred CeeccCCCccceEeccCCCccccEEEec---cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecc--cccC
Confidence 9999999999999999987776777776 9999999999998899999986 6999999999985 55555 6678
Q ss_pred CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 241 GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
+.|.+|.|++..+.++.+.| +++.+.+|++.. .+.+..+.+|...|..++++|++ ..+++++ .|.++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg---------~~i~t~a-~DETl 455 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDG---------ETIVTGA-ADETL 455 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCC---------CEEEEec-ccCcE
Confidence 89999999999756666665 456678888877 57888899999999999999999 6999999 99999
Q ss_pred EEEcCCC
Q 020107 320 RIWMPES 326 (331)
Q Consensus 320 ~iW~~~~ 326 (331)
++|++-+
T Consensus 456 rfw~~f~ 462 (484)
T KOG0305|consen 456 RFWNLFD 462 (484)
T ss_pred EeccccC
Confidence 9999865
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-33 Score=226.16 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=232.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.|...+....++|.|.|+|+|. ..|.||||+....+..++..++.-.++|.+++|+++ ++.|++.+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD----------~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d----s~RI~avG 122 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGD----------VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD----SKRIAAVG 122 (603)
T ss_pred cccceeEEEEeCCCceEEeecC----------CcCcEEEEeccCcceeeeeeeeecccccccceeCCC----CcEEEEEe
Confidence 3444444444444458999997 899999999988665666666777899999999999 66666554
Q ss_pred C-CccE----EEecCCCc----ccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 90 A-DGGL----LRDITGEK----ISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 90 ~-dg~i----iw~~~~~~----~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+ .+.. +||..+.. -|...|++++|-|..++ +++|++|++|.+|+-.- ++....+..|..-|.++.|+|
T Consensus 123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--FKFk~s~r~HskFV~~VRysP 200 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--FKFKSSFREHSKFVNCVRYSP 200 (603)
T ss_pred cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC--eeeeecccccccceeeEEECC
Confidence 3 3333 88876532 37889999999998886 99999999999998543 344667788999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
++.++++++.||++.+||-.+++....+....+|++.|.+++|+| |+..++|.+.|.+++|||..+. ..+.++....
T Consensus 201 -DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~ 277 (603)
T KOG0318|consen 201 -DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGS 277 (603)
T ss_pred -CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc-ceEEEeecCC
Confidence 799999999999999999999999888886677999999999999 9999999999999999999985 5555422222
Q ss_pred C--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 240 G--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 240 ~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
. ..-..+.|-. ..+++.+..+.+.+++..+. ..+..+.||...|+++..+|++ .+|.||+ .||
T Consensus 278 ~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~--~~~~~i~GHnK~ITaLtv~~d~---------~~i~Sgs-yDG 342 (603)
T KOG0318|consen 278 TVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDP--SVLKVISGHNKSITALTVSPDG---------KTIYSGS-YDG 342 (603)
T ss_pred chhceEEEEEEeC---CeEEEEEcCcEEEEecccCC--ChhheecccccceeEEEEcCCC---------CEEEeec-cCc
Confidence 2 3344556663 56888888898888888775 5888999999999999999999 6999999 999
Q ss_pred eEEEEcCCCcccC
Q 020107 318 LLRIWMPESDCLT 330 (331)
Q Consensus 318 ~i~iW~~~~~~~~ 330 (331)
.|.-|+..++...
T Consensus 343 ~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 343 HINSWDSGSGTSD 355 (603)
T ss_pred eEEEEecCCcccc
Confidence 9999999887643
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=217.33 Aligned_cols=243 Identities=21% Similarity=0.318 Sum_probs=211.6
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
....+|.+.|+.+.|+|+ +..||+|+.|..| +|++... +.|.+.|..+.|.++++.+++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCC----CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345789999999999998 9999999999999 9996542 358999999999999999999999999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
||.++++. ++.+++|..-|+++.-+..+..++.+++.|+++++||+|+...++.+.. +..++++.|.. .+..+
T Consensus 117 wD~~tG~~--~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~----kyqltAv~f~d-~s~qv 189 (338)
T KOG0265|consen 117 WDAETGKR--IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN----KYQLTAVGFKD-TSDQV 189 (338)
T ss_pred Eeccccee--eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc----ceeEEEEEecc-cccce
Confidence 99999965 8889999999999986655677899999999999999999888877764 77899999998 88999
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCc---
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGS--- 286 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~--- 286 (331)
.+|+-|+.|++||++.... +. .+.+|..+|+.+..+|++ ..+++-++++.+++|+++.. ..+++..+.+|..
T Consensus 190 ~sggIdn~ikvWd~r~~d~-~~-~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDG-LY-TLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred eeccccCceeeeccccCcc-eE-EeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 9999999999999998533 33 358999999999999998 78899999999999999763 3556777877643
Q ss_pred -ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 287 -LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 287 -~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
....++|+|++ +.+.+++ .|+.+++||...
T Consensus 267 knlL~cswsp~~---------~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 267 KNLLKCSWSPNG---------TKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred hhcceeeccCCC---------Ccccccc-ccceEEEeeccc
Confidence 56678999998 6888888 999999999866
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=227.51 Aligned_cols=258 Identities=15% Similarity=0.252 Sum_probs=220.1
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
..+++|. +|++|+|||..+.. ....+.+|++.|.|+.|... .|++|+.|.++ +||++++++
T Consensus 208 ~kiVSGl----------rDnTikiWD~n~~~--c~~~L~GHtGSVLCLqyd~r------viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 208 EKIVSGL----------RDNTIKIWDKNSLE--CLKILTGHTGSVLCLQYDER------VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred hhhhccc----------ccCceEEeccccHH--HHHhhhcCCCcEEeeeccce------EEEecCCCceEEEEeccCCch
Confidence 5688887 89999999999876 44555899999999999765 99999999999 999999886
Q ss_pred ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce-eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL-EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
|...|..+.|+ ..++++++.|.++.+||+....- .....+.+|...|+.+.|+. +++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEE
Confidence 67889999996 47899999999999999987542 22345789999999999864 69999999999999
Q ss_pred EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107 177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
|++.+.+.+..+.. |+..|.|+.+ .++++++|+.|.+|++||+..+ .++.. +.+|+.-|.++.|.. ..+
T Consensus 345 W~~st~efvRtl~g---HkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G-~cLRv-LeGHEeLvRciRFd~---krI 413 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNG---HKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG-ACLRV-LEGHEELVRCIRFDN---KRI 413 (499)
T ss_pred Eeccceeeehhhhc---ccccceehhc---cCeEEEecCCCceEEEEecccc-HHHHH-HhchHHhhhheeecC---cee
Confidence 99999998888877 9999999988 6799999999999999999996 44443 589999999999986 578
Q ss_pred EEEEecCcEEEEEEcCcccc-------eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 257 LAACMHNGFAVVKVGGEKAE-------VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++++.|+.+++|++...... ++.++..|.+.|..+.|..- .+++++ .|.+|-|||+.++.
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-----------qIvsss-HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-----------QIISSS-HDDTILIWDFLNGP 480 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-----------EEEecc-CCCeEEEEEcCCCC
Confidence 89999999999999764222 45566689999999999764 688888 89999999997763
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=219.86 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=241.4
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc------eEEeEeeecCcEeEEEEcCCCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN------LELLYRMDTAGIFDIKWSPVGG 79 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~ 79 (331)
+--..|+.|..|+|++ +||++|+ .||.|.+|+..+++.. ....+-.+..+|.|+.|+.+
T Consensus 210 Fg~KSh~EcA~FSPDg---qyLvsgS----------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-- 274 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDG---QYLVSGS----------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-- 274 (508)
T ss_pred cccccchhheeeCCCC---ceEeecc----------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--
Confidence 3345688888888887 9999999 8999999999877521 11223346789999999999
Q ss_pred CCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccce
Q 020107 80 NAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE 151 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 151 (331)
..+||+|+.||.+ +|.+.++++ |...|+|+.|+.|+..+++++.|.++++.-+.+++. ++.+++|...
T Consensus 275 --sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~--LKEfrGHsSy 350 (508)
T KOG0275|consen 275 --SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC--LKEFRGHSSY 350 (508)
T ss_pred --HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh--HHHhcCcccc
Confidence 8999999999999 999999876 788999999999999999999999999999999965 8999999999
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
|+...|.+ +++.+++++.||+|++|+..+.++...+.. .+...+|+++..-|.++..++++...++|.+-++.. +.
T Consensus 351 vn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--Qv 426 (508)
T KOG0275|consen 351 VNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QV 426 (508)
T ss_pred ccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccC-CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eE
Confidence 99999997 899999999999999999999999988887 446788999999997888999999999999999875 44
Q ss_pred ceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107 232 VNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 232 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
+..+.. ...+..-+.+.+|.| ..+.+.+.|+.++.+.+.. +.+-.++.-|...|.+++-+|.. ++|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~s--G~LE~tl~VhEkdvIGl~HHPHq---------Nll 494 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLS--GKLERTLPVHEKDVIGLTHHPHQ---------NLL 494 (508)
T ss_pred EeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeec--CceeeeeecccccccccccCccc---------chh
Confidence 444222 234567778889998 7777888888766666555 78888899999999999999988 799
Q ss_pred EEeecCCCeEEEEcC
Q 020107 310 ATCSFYDRLLRIWMP 324 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~ 324 (331)
|+-+ +||.+++|..
T Consensus 495 AsYs-EDgllKLWkp 508 (508)
T KOG0275|consen 495 ASYS-EDGLLKLWKP 508 (508)
T ss_pred hhhc-ccchhhhcCC
Confidence 9999 9999999963
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-34 Score=220.89 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=219.0
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+.....+|..+|+.+-|+|. ...+++++.|+++ +||..++++ |...+.+++|+..|+++++++.|-.+.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPS----EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred chhhhhccccceeeeeeccC----ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 44444678999999999999 8899999999999 999998765 677899999999999999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
+||..+. ..+++.+.+|+..|.+++|-| .++++++++.|.+|+.|++.++-++..+.. |...|..+..+. |+.+
T Consensus 176 LWd~~~~-~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~---h~ewvr~v~v~~-DGti 249 (406)
T KOG0295|consen 176 LWDFDTF-FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPG---HSEWVRMVRVNQ-DGTI 249 (406)
T ss_pred heeHHHH-HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccC---chHhEEEEEecC-CeeE
Confidence 9999874 456788889999999999999 679999999999999999999999988887 999999999999 9999
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC--------------CCeEEEEEecCcEEEEEEcCcccc
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI--------------PGLVLAACMHNGFAVVKVGGEKAE 276 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
+++++.|.+|++|-..+. ++... +..|..+|.+++|.|.. ...+.+.+.|+.|++|++.. +.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t--g~ 325 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST--GM 325 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC--Ce
Confidence 999999999999999985 33333 47899999999998732 13566666778889999887 69
Q ss_pred eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++.++.+|.+.|.+++|+|.| ++|+|+. +|++|++||+.+...
T Consensus 326 cL~tL~ghdnwVr~~af~p~G---------kyi~Sca-DDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGG---------KYILSCA-DDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEEEecccceeeeeEEcCCC---------eEEEEEe-cCCcEEEEEecccee
Confidence 999999999999999999999 7999999 999999999988753
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-33 Score=206.88 Aligned_cols=286 Identities=14% Similarity=0.139 Sum_probs=229.9
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+.||-..+....++.+|++|.+++ +|..+.||-..+++ .+. .+.+|++.|+++...-+ .+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFsca----------KD~~~~vw~s~nGe-rlG-ty~GHtGavW~~Did~~----s~~li 68 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCA----------KDSTPTVWYSLNGE-RLG-TYDGHTGAVWCCDIDWD----SKHLI 68 (327)
T ss_pred ccccCccccceEEecCCCcEEEEec----------CCCCceEEEecCCc-eee-eecCCCceEEEEEecCC----cceee
Confidence 3455555555555555559999998 89999999887775 444 45899999999999998 88999
Q ss_pred EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec-----CCeEEEEEcccc-----ceeeeeeeecccc
Q 020107 87 QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVES-----QLEVLQQWKAHEF 150 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~-----~~~~~~~~~~~~~ 150 (331)
+|+.|.++ +||+.+++. .+.+|..+.|+++|++++.... .+.|.++|++.. ..+|...+..+..
T Consensus 69 TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 99999999 999999887 3788999999999998777654 468999999842 1245677777889
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
.++.+-|.| -+..|++|..||.|.+||++++.. +..... |...|+.|.++| +..++++++.|.+-++||.++.
T Consensus 149 kit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~---h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl- 222 (327)
T KOG0643|consen 149 KITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEE---HSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL- 222 (327)
T ss_pred ceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhh---hccccccccccC-CcceEEecccCccceeeeccce-
Confidence 999999999 789999999999999999999853 233333 999999999999 9999999999999999999986
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCC
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
..+.. .....+|++.+++|.. ..++.+|+.+...+-...... .+.+..+++|-++|++++|+|+|
T Consensus 223 ~v~Kt--y~te~PvN~aaisP~~-d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 223 EVLKT--YTTERPVNTAAISPLL-DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred eeEEE--eeecccccceeccccc-ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 55555 6678899999999976 444444444432222222211 45677888999999999999999
Q ss_pred CcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 298 SSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
...+||| +||.||+..++..
T Consensus 300 ---------ksYsSGG-EDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 300 ---------KSYSSGG-EDGYVRLHHFDSN 319 (327)
T ss_pred ---------cccccCC-CCceEEEEEeccc
Confidence 6999999 9999999877654
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=208.69 Aligned_cols=240 Identities=22% Similarity=0.321 Sum_probs=203.8
Q ss_pred EeEEEEcCCCCCCCCeEEEE--cC-----CccE-EEecCCCcc--------cCccEEEEEEcCCC-CeEEEEecCCeEEE
Q 020107 69 IFDIKWSPVGGNAGPFLAQA--DA-----DGGL-LRDITGEKI--------SSSMCLCLEWNPSA-TSITVGLSDGSVSI 131 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~--~~-----dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 131 (331)
=.++.|||--++ +||++ .. .|.+ |-++...+. -...+..++|+++. +.+++++.||++++
T Consensus 11 GysvqfSPf~~n---rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 11 GYSVQFSPFVEN---RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred cceeEecccccc---hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence 367899997533 44443 32 3444 666642221 25678899999965 45888899999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
||+... ..|+..++.|..+|.++.|++..+..+++++-|++|++||...++.+..+.. |...|+...|+|..++++
T Consensus 88 ~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 88 FDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---HNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---CccEEEEEecCCCCCCeE
Confidence 996544 3688999999999999999998888899999999999999998888888877 999999999999999999
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA 291 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 291 (331)
++++.|+++++||++...+.+.. ..|...|.++.|+...+.++++++.++.++.|++++. ..++.++.+|.-.|..+
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i--~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~eL~gh~~AVRkv 240 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSI--EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFELNGHGLAVRKV 240 (311)
T ss_pred EEccCCceEEEEEecCCCceeEE--EeccceeEeecccccCCcEEEecCCCceEEEEehhhc-cccceeecCCceEEEEE
Confidence 99999999999999998776664 8999999999999988788889999999999999998 57788899999999999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+|||... .+|||++ .|-++||||...+
T Consensus 241 k~Sph~~--------~lLaSas-YDmT~riw~~~~~ 267 (311)
T KOG0277|consen 241 KFSPHHA--------SLLASAS-YDMTVRIWDPERQ 267 (311)
T ss_pred ecCcchh--------hHhhhcc-ccceEEecccccc
Confidence 9999886 8999999 9999999998743
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-34 Score=241.45 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=212.9
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 136 (331)
..+..|..++|+|. ..+++++-.+|.| +||.+-+. .|.++|..+.|+|+..++++|+.|-.|++|+..+
T Consensus 7 skSsRvKglsFHP~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccccccceecCCC----CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 34567999999999 7899999999999 99987654 4899999999999999999999999999999998
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
.+ ++.++.+|...|..+.|++ .-..++++|+|.+|+||+..+.+++..+.. |...|.|..|+| ...++++++.
T Consensus 83 rr--clftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltG---HnHYVMcAqFhp-tEDlIVSaSL 155 (1202)
T KOG0292|consen 83 RR--CLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTG---HNHYVMCAQFHP-TEDLIVSASL 155 (1202)
T ss_pred ce--ehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEec---CceEEEeeccCC-ccceEEEecc
Confidence 75 4889999999999999997 778999999999999999999999999998 999999999999 9999999999
Q ss_pred CCeEEEEEecCCC---------------------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 217 DEYLRVWDVRSIS---------------------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 217 d~~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
|.+||+||+...+ ..+...+.+|...|+-++|+|.- .++++++.|..+++|+
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWR 234 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEE
Confidence 9999999996421 11233456899999999999985 5556666666778888
Q ss_pred EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+.....-.+.+.++|.+.|.++-|+|.. .+++|.| +|++|++||++..
T Consensus 235 mnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSns-EDksirVwDm~kR 282 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNS-EDKSIRVWDMTKR 282 (1202)
T ss_pred eccccceeehhhhcccCCcceEEecCcc---------ceeEecC-CCccEEEEecccc
Confidence 8877666788889999999999999987 6999999 9999999999753
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-33 Score=228.35 Aligned_cols=273 Identities=14% Similarity=0.251 Sum_probs=228.2
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.+|.++|..| .+.++-| +|.|.||+.+++. +...+.-..-+|++..|-+. .+++++|+
T Consensus 14 dRVKsVd~HPteP---w~la~Ly----------nG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaR----knWiv~Gs 74 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP---WILAALY----------NGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIAR----KNWIVTGS 74 (794)
T ss_pred CceeeeecCCCCc---eEEEeee----------cCeeEEEecccce--eeeeeeecccchhhheeeec----cceEEEec
Confidence 3577888888885 7777764 9999999999986 44444566788999999999 88999999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.|+.| +++..+.+. |...|.+++.+|..+++++++.|-.|++||.+. .+.+.+++.+|..-|.+++|+|.+.
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCc
Confidence 99999 998887643 789999999999999999999999999999974 5678899999999999999999999
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
+.+++++-|++|++|.+.+..+...+.. |...|+|+.+-+- +..+|++|+.|.+|++||.++ +.++.+ +.+|..
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~T-LeGHt~ 228 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQT-LEGHTN 228 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHH-hhcccc
Confidence 9999999999999999998877777776 9999999999872 335999999999999999998 466666 689999
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
.|..+.|+|.- ..+++++.|+.+++|+-.. -++..++.-.-+.|++++-.+.+ +.++.|. +.|.|.
T Consensus 229 Nvs~v~fhp~l-piiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~---------~~i~vG~-Deg~i~ 294 (794)
T KOG0276|consen 229 NVSFVFFHPEL-PIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGD---------GKIAVGF-DEGSVT 294 (794)
T ss_pred cceEEEecCCC-cEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCC---------CeEEEec-cCCcEE
Confidence 99999999985 5566666677777776554 34455555556789999988877 5677776 555553
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=235.32 Aligned_cols=240 Identities=23% Similarity=0.370 Sum_probs=202.9
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
+...|.++.|+|+ +..+++++.++.+ +|+..... .|...|.+++|+|+++++++++.|++|++||++
T Consensus 158 ~~~sv~~~~fs~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCC----CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 3678999999999 8999999999999 88874333 378889999999999999999999999999994
Q ss_pred ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
... ..++.+++|...|++++|+| .++++++|+.|++|++||++++++...+.. |...|++++|++ ++++|++++
T Consensus 234 ~~~-~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~---hs~~is~~~f~~-d~~~l~s~s 307 (456)
T KOG0266|consen 234 DDG-RNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKG---HSDGISGLAFSP-DGNLLVSAS 307 (456)
T ss_pred CCC-eEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeec---cCCceEEEEECC-CCCEEEEcC
Confidence 432 45888999999999999999 559999999999999999999988888887 999999999999 999999999
Q ss_pred cCCeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce---e
Q 020107 216 YDEYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA---Y 289 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~ 289 (331)
.|+.|++||+.++.. ++.. +..+.. ++++++|+|++ .+++++..++.+++|++.. +..+..+.+|...+ .
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~--~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKL-LSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRS--GKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCccEEEEECCCCceeeeec-ccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccC--CcceeeecccCCcceeEe
Confidence 999999999998642 2222 233333 59999999997 6777777777899999987 57888888887753 3
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+...++.+ .++++++ .|+.|++|++.++.
T Consensus 384 ~~~~~~~~---------~~i~sg~-~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 384 SPTLSTGG---------KLIYSGS-EDGSVYVWDSSSGG 412 (456)
T ss_pred cccccCCC---------CeEEEEe-CCceEEEEeCCccc
Confidence 33445555 7999999 99999999998753
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-32 Score=250.75 Aligned_cols=261 Identities=17% Similarity=0.254 Sum_probs=214.5
Q ss_pred CCcEEEEeccCcccceEEe----EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------------cc
Q 020107 43 NGSISLFNVNAEEKNLELL----YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------------IS 104 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~ 104 (331)
+|.+++|+...... .... ...|...|.+++|+|+ +++|++|+.|+.+ +|+..... .+
T Consensus 457 ~gl~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~i~fs~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRV-KADLKQGDLLNSSNLVCAIGFDRD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEE-EEeeccccccCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence 56788888776431 1111 1237888999999999 8999999999999 99975311 12
Q ss_pred CccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 105 SSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 105 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
...+.+++|++. +.+|++++.||+|++||+.+++. +..+.+|...|++++|+|.++.+|++|+.|+.|++||++++.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 456789999874 67899999999999999987743 777889999999999998678899999999999999999887
Q ss_pred ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
....+.. ...+.++.|++.++.+|++|+.|+.|++||+++...++.. ...|...|..+.|.+. ..+++++.|+
T Consensus 610 ~~~~~~~----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-~~~h~~~V~~v~f~~~--~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIKT----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-MIGHSKTVSYVRFVDS--STLVSSSTDN 682 (793)
T ss_pred EEEEEec----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-ecCCCCCEEEEEEeCC--CEEEEEECCC
Confidence 7666654 4679999997657999999999999999999986444444 4689999999999854 7788888999
Q ss_pred cEEEEEEcCc----ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 264 GFAVVKVGGE----KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 264 ~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+++|++... ....+.++.+|...+..+.|+|++ .+|++|+ .|+.|++|+....
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~---------~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD---------GYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC---------CEEEEEe-CCCEEEEEECCCC
Confidence 9999998742 245678899999999999999998 6999999 9999999997543
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-33 Score=230.58 Aligned_cols=243 Identities=17% Similarity=0.222 Sum_probs=211.3
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
..+...|.++.|+|. ..+++++-.+|.+ ||+.++... ...+|.+..|-+..+.+++|+.|..|++|+..
T Consensus 10 ~~rSdRVKsVd~HPt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hccCCceeeeecCCC----CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 347788999999999 8899999999999 999988654 46788888999999999999999999999999
Q ss_pred ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
+.+. +..|..|..-|++++.+| ...+++++++|-.|++||.... .+.+.+.. |...|.+++|+|.|.+.++++
T Consensus 86 t~ek--V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 86 TGEK--VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEG---HEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ccee--eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcC---cceEEEEEEecCCCccceeee
Confidence 8754 899999999999999999 6688999999999999999865 34555655 999999999999999999999
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 293 (331)
+.|++|++|.+.+. .|..+ +.+|...|+++.+-+.++. ++++++.|..+++|+... ..+++++.||...|..+.|
T Consensus 160 sLDrTVKVWslgs~-~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--k~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSP-HPNFT-LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--KSCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred eccccEEEEEcCCC-CCcee-eeccccCcceEEeccCCCcceEEecCCCceEEEeecch--HHHHHHhhcccccceEEEe
Confidence 99999999999985 55555 5799999999999987644 555555556677777776 5899999999999999999
Q ss_pred cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|.-| +++||| +||++|||+-.+-.+
T Consensus 236 hp~lp---------iiisgs-EDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 236 HPELP---------IIISGS-EDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCCc---------EEEEec-CCccEEEecCcceeh
Confidence 99995 999999 999999999876543
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=201.36 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=203.5
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
+...++++|.++.|+-+ +++.++++.|.++ +|+...+.+ |...|..++.+.|+..+++++.|..+.+||
T Consensus 12 ~l~~~qgaV~avryN~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eecccccceEEEEEccC----CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34778999999999999 9999999999999 999876654 788899999999999999999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
+++++. .+.+.+|...|+.++|+. +...+++|+.|..+++||.|+....++. ......+.|.++... +..+++
T Consensus 88 V~TGkv--~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQ-ildea~D~V~Si~v~---~heIva 160 (307)
T KOG0316|consen 88 VNTGKV--DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQ-ILDEAKDGVSSIDVA---EHEIVA 160 (307)
T ss_pred cccCee--eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccc-hhhhhcCceeEEEec---ccEEEe
Confidence 999976 899999999999999996 8899999999999999999976543322 223367889999985 578999
Q ss_pred EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107 214 GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 293 (331)
|+.||++|.||+|.+ + +.. .....+|+++.|++++ +..++++.+..+++++-. +++++..+++|...-+.+..
T Consensus 161 GS~DGtvRtydiR~G-~-l~s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~--tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKG-T-LSS--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKE--TGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred eccCCcEEEEEeecc-e-eeh--hhcCCcceeEEecCCC-CEEEEeeccceeeecccc--hhHHHHHhcccccceeeeee
Confidence 999999999999986 2 222 5677899999999998 788888898886666544 48999999999887666554
Q ss_pred cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+-... ...+++|+ +||.|++||+.+..+
T Consensus 234 ~l~qs-------dthV~sgS-EDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 234 CLNQS-------DTHVFSGS-EDGKVYFWDLVDETQ 261 (307)
T ss_pred eeccc-------ceeEEecc-CCceEEEEEecccee
Confidence 43321 16899999 999999999987643
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=233.74 Aligned_cols=279 Identities=15% Similarity=0.206 Sum_probs=234.3
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+..++|+|..| .+.++- -+|.|++||..-+. +..-+..|.++|..+.|+|. +.++++|+
T Consensus 10 sRvKglsFHP~rP---wILtsl----------HsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~----qplFVSGG 70 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP---WILTSL----------HSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPT----QPLFVSGG 70 (1202)
T ss_pred ccccceecCCCCC---EEEEee----------cCceeeeehhhhhh--HHhhhhccCCccceeeecCC----CCeEEecC
Confidence 3567788888884 788876 59999999998775 33344789999999999999 88999999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.|-+| +|+..+.++ |-..|..+.|++.-+.|++++.|.+|+||+..+.+. +..+.+|...|.|..|+| ..
T Consensus 71 DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~--iavltGHnHYVMcAqFhp-tE 147 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC--IAVLTGHNHYVMCAQFHP-TE 147 (1202)
T ss_pred CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce--EEEEecCceEEEeeccCC-cc
Confidence 99999 999998776 788999999999999999999999999999998754 888999999999999999 78
Q ss_pred cEEEEEcCCCeEEEEEccCCCce---e---------------ee--------ecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFK---L---------------AF--------QNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~---~---------------~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
.+++++|-|.+||+||+..-+.. + .+ ....+|...|+-++|+| .-.++++|+.
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~D 226 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGAD 226 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCC
Confidence 99999999999999999632110 0 00 11246999999999999 8889999999
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
|..|++|.+...+.--.....+|...|.++-|+|.. .++++.+.|..+++|++... ..+++++...+.-+.++-+|.
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kR--t~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKR--TSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccc--cceeeeeccCCeEEEEEecCC
Confidence 999999999764322222357899999999999986 78889999999999999884 778888877788999999999
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
. ++++.|- |+-+.++.++
T Consensus 304 l---------NLfAAgH--DsGm~VFkle 321 (1202)
T KOG0292|consen 304 L---------NLFAAGH--DSGMIVFKLE 321 (1202)
T ss_pred c---------ceeeeec--CCceEEEEEc
Confidence 8 5777664 8878888776
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-32 Score=227.02 Aligned_cols=282 Identities=17% Similarity=0.232 Sum_probs=231.6
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
+...||-..|.-...+.+...+++|+ ++.|++|+.++.+ .++.+ ..+-+.+..|.|. +.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-----------~~SikiWn~~t~k-ciRTi---~~~y~l~~~Fvpg----d~~I 427 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-----------GESIKIWNRDTLK-CIRTI---TCGYILASKFVPG----DRYI 427 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-----------CCcEEEEEccCcc-eeEEe---ccccEEEEEecCC----CceE
Confidence 44556554444433333337888886 9999999999875 45544 3357999999999 8999
Q ss_pred EEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-----ceeee------eeeec
Q 020107 86 AQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-----QLEVL------QQWKA 147 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~------~~~~~ 147 (331)
++|..+|.+ ++++... +.|.+.+.+++..||++.+++|+.|.+|++||..-. ....+ +.+.
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe- 506 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE- 506 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-
Confidence 999999999 8887664 348999999999999999999999999999997531 10011 1222
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
-+..|.|+.++| ++.+|+++--|.++++|-+.+-+....+.+ |.-+|.||.++| ++++++||+.|.+|++|-++-
T Consensus 507 l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDIS~-DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 507 LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecc---cccceeEEeccC-CcCeEEeccCCCceEEecccc
Confidence 356799999999 889999999999999999998775555555 999999999999 999999999999999999987
Q ss_pred CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107 228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
+ .+... +.+|...|+++.|.|.. ..+.++|.++.++.|+-.+ .+.++.+.+|...|++++.+|+| .
T Consensus 582 G-DCHKS-~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G---------~ 647 (888)
T KOG0306|consen 582 G-DCHKS-FFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNG---------S 647 (888)
T ss_pred c-hhhhh-hhcccCceeEEEEcccc-eeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCC---------C
Confidence 6 44444 58999999999999975 7788888888888887666 58899999999999999999999 7
Q ss_pred EEEEeecCCCeEEEEcCCCc
Q 020107 308 LVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~~ 327 (331)
+++|+| .|.+|++|.....
T Consensus 648 ~vvs~s-hD~sIRlwE~tde 666 (888)
T KOG0306|consen 648 FVVSSS-HDKSIRLWERTDE 666 (888)
T ss_pred eEEecc-CCceeEeeeccCc
Confidence 999999 9999999997664
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=197.26 Aligned_cols=273 Identities=15% Similarity=0.155 Sum_probs=223.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
++++..++|.-++ +|.++++ .|.+|++|+...+. +...+.+|...|.+++.+.+ ...|++|
T Consensus 17 qgaV~avryN~dG---nY~ltcG----------sdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~D----nskf~s~ 77 (307)
T KOG0316|consen 17 QGAVRAVRYNVDG---NYCLTCG----------SDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSD----NSKFASC 77 (307)
T ss_pred ccceEEEEEccCC---CEEEEcC----------CCceEEeecccccc--eeeeecCCCceeeecccccc----ccccccC
Confidence 5677788887776 7766665 69999999998885 66677999999999999999 7899999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.|..+ +||+.+++. |...|+.++|+.+...+++|+.|.++++||.++...+|++.+......|.++..+.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-- 155 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence 999999 999999875 78999999999999999999999999999999999999999988888999999864
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
+.|++|+.||+++.||+|.++...-+ -..+|++++|++ +++..+.++.|+++++.|-.++ +.+.. ..+|..
T Consensus 156 -heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tG-klL~s-YkGhkn 226 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETG-KLLKS-YKGHKN 226 (307)
T ss_pred -cEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecC-CCCEEEEeeccceeeecccchh-HHHHH-hccccc
Confidence 78999999999999999998743332 367899999999 9999999999999999999986 44443 467766
Q ss_pred ceEEE--EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc-eeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 242 GVWRI--KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL-AYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 242 ~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
.=+.+ +++... ..++.++.|+.+.+|++-+ ...+..+..|... |.+++++|..+ -++++. ++.
T Consensus 227 ~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd--~~~~sk~~~~~~v~v~dl~~hp~~~---------~f~~A~--~~~ 292 (307)
T KOG0316|consen 227 MEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVD--ETQISKLSVVSTVIVTDLSCHPTMD---------DFITAT--GHG 292 (307)
T ss_pred ceeeeeeeecccc-eeEEeccCCceEEEEEecc--ceeeeeeccCCceeEEeeecccCcc---------ceeEec--CCc
Confidence 55444 344432 4555555667778888887 4677777777766 89999999985 455554 667
Q ss_pred EEEEcCC
Q 020107 319 LRIWMPE 325 (331)
Q Consensus 319 i~iW~~~ 325 (331)
+.+|.-+
T Consensus 293 ~~~~~~~ 299 (307)
T KOG0316|consen 293 DLFWYQE 299 (307)
T ss_pred eeceeeh
Confidence 7777644
No 55
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=211.05 Aligned_cols=275 Identities=16% Similarity=0.197 Sum_probs=227.6
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+.++.-+|.. +.+++|+ .|..+.++|...++ +..++++|...|+.+.|+|+ ...+++++.|
T Consensus 222 i~ald~~~s~---~~ilTGG----------~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~----~~~v~~aSad 282 (506)
T KOG0289|consen 222 ITALDIIPSS---SKILTGG----------EDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKD----LDTVITASAD 282 (506)
T ss_pred eeEEeecCCC---CcceecC----------CCCceEEEecchhh--hhhhccCcceEEEEEEeccc----hhheeecCCc
Confidence 4455555553 6888887 79899999999886 66677999999999999999 8899999999
Q ss_pred ccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107 92 GGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164 (331)
Q Consensus 92 g~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (331)
..+ +|...... +|..+|+.+..+|.|++|++++.||+..+.|++++.......-+..+-.+++.+|+| ++.+
T Consensus 283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLi 361 (506)
T KOG0289|consen 283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLI 361 (506)
T ss_pred ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceE
Confidence 999 99886643 478999999999999999999999999999999987533333333446699999999 8999
Q ss_pred EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE
Q 020107 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW 244 (331)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 244 (331)
|.+|..|+.|+|||+.++.....|.. |.++|..|+|+. +|.+|++++.|+.|++||+|.. +.+..+......++.
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpg---ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPG---HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVN 436 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCC---CCCceeEEEecc-CceEEEEEecCCeEEEEEehhh-cccceeeccccccce
Confidence 99999999999999998876666665 999999999999 9999999999999999999986 445543445555899
Q ss_pred EEEECCCCCCeEEEEEecCcEEEEEEc--CcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 245 RIKHHPFIPGLVLAACMHNGFAVVKVG--GEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
++.|.+.| .+++++|.+ ++++... ..+...+..+..|.+..+.+.|.... ++++++| .|..++++
T Consensus 437 s~~fD~SG-t~L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a---------q~l~s~s-md~~l~~~ 503 (506)
T KOG0289|consen 437 SLSFDQSG-TYLGIAGSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA---------QYLASTS-MDAILRLY 503 (506)
T ss_pred eEEEcCCC-CeEEeecce--eEEEEEecccccceeeehhhhcccccceeeecccc---------eEEeecc-chhheEEe
Confidence 99999997 555555444 4455544 33467788888899999999999988 7999999 99999988
Q ss_pred cC
Q 020107 323 MP 324 (331)
Q Consensus 323 ~~ 324 (331)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 64
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=230.79 Aligned_cols=240 Identities=18% Similarity=0.311 Sum_probs=197.2
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------------------------------cc-----
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------------------------------KI----- 103 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------------------------------~~----- 103 (331)
+...|.++|++|.||++ |++||+|+.|+.| ||.+... ..
T Consensus 262 ~~~ah~gaIw~mKFS~D----GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHD----GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred cccccCCcEEEEEeCCC----CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 33379999999999999 9999999999999 9987550 00
Q ss_pred ------------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107 104 ------------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 104 ------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
|...|.+|+|+.+ ++|++++-|.+|++|++... .++..|. |..-|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVT 413 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVT 413 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEEe-cCCeeE
Confidence 4566889999854 68999999999999999865 4577776 999999
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
|++|+|.+.++|++|+-||.||||++...+.. .+.. -..-|++++|.| +|+..++|+.+|.+++|+.+..+ ...
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~D---l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk-~~~ 487 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWND---LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLK-LVS 487 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeE-eehh---hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCe-EEE
Confidence 99999999999999999999999999976643 3433 358899999999 89999999999999999998753 222
Q ss_pred ee-eeec------CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc--ceeeeeecCCCCcccccc
Q 020107 234 ET-SVCL------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--LAYGADWQRGRSSLEGKR 304 (331)
Q Consensus 234 ~~-~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~ 304 (331)
.. ...+ ...|+.++|.|.....+++++.|..|+|++..+. .++..|+|+.. .-....|+.++
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~Dg------- 558 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSDG------- 558 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--hhhhhhcccccCCcceeeeEccCC-------
Confidence 21 1111 2379999999987777999999999999999774 67777776433 44578899988
Q ss_pred cCcEEEEeecCCCeEEEEcCCC
Q 020107 305 KNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 305 ~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++|++++ +|..|++|+.+.
T Consensus 559 --k~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 559 --KHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred --CEEEEee-cCceEEEEeCCC
Confidence 7999999 999999999854
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=212.60 Aligned_cols=274 Identities=14% Similarity=0.205 Sum_probs=227.9
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.++.|+|.+| .-+|+.+ .-.+.||+..+.. ..+.+ ......|.++.|-.| |++||+|
T Consensus 26 ~~~vssl~fsp~~P--~d~aVt~-----------S~rvqly~~~~~~-~~k~~-srFk~~v~s~~fR~D----G~LlaaG 86 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHP--YDFAVTS-----------SVRVQLYSSVTRS-VRKTF-SRFKDVVYSVDFRSD----GRLLAAG 86 (487)
T ss_pred cCcceeEecCCCCC--CceEEec-----------ccEEEEEecchhh-hhhhH-HhhccceeEEEeecC----CeEEEcc
Confidence 35788999999998 4466665 5689999988875 33333 445678999999999 9999999
Q ss_pred cCCccE-EEecCCC------cccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 DADGGL-LRDITGE------KISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 ~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
...|.+ ++|..+. ..|..++..+.|+|+++. +++|+.|+.+++||+.+... ...+.+|+..|.+.+|+|.
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPA 164 (487)
T ss_pred CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccC
Confidence 999999 9996552 348899999999997665 77788899999999998753 6678899999999999998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
+++++++|+.||.|++||++... .+..+. |..+|..+.+-| .+..+++++. ..|++||+-++.+.+.. ...|
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~-~~~H 237 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTS-MFNH 237 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhh-hhcc
Confidence 88999999999999999999874 233333 899999999999 8899999874 67999999987666665 3559
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
...|+|+++..++ ..|++++-|+.++++++.+ .+.+..+.- .++|.+++.+|++ +.++.|. .||.+
T Consensus 238 ~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~--~Kvv~s~~~-~~pvLsiavs~dd---------~t~viGm-snGlv 303 (487)
T KOG0310|consen 238 NKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTN--YKVVHSWKY-PGPVLSIAVSPDD---------QTVVIGM-SNGLV 303 (487)
T ss_pred cceEEEEEeecCC-ceEeecccccceEEEEccc--eEEEEeeec-ccceeeEEecCCC---------ceEEEec-cccee
Confidence 9999999999987 8899999999999999776 477777764 6899999999998 6888888 89988
Q ss_pred EEEcC
Q 020107 320 RIWMP 324 (331)
Q Consensus 320 ~iW~~ 324 (331)
.+=+.
T Consensus 304 ~~rr~ 308 (487)
T KOG0310|consen 304 SIRRR 308 (487)
T ss_pred eeehh
Confidence 76544
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.9e-32 Score=218.34 Aligned_cols=288 Identities=16% Similarity=0.223 Sum_probs=216.1
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCC
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
.+.+.++...|.-....|.|..|++|+ -|-.|++||+...... ++.+.......|++++|++.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T---- 225 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT---- 225 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCcccccccceeeecCC----
Confidence 356677778888888888889999999 5999999999876533 44444445667999999999
Q ss_pred CCeEEEEcCCccE-------------------EEecCCCcccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceee
Q 020107 82 GPFLAQADADGGL-------------------LRDITGEKISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 82 ~~~l~~~~~dg~i-------------------iw~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 141 (331)
+..|++.+..... |-|+...+.|...++|.+|+|..+ .+++++.||++++||+...+. .
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q 304 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-Q 304 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-h
Confidence 6666665554444 334444555788899999999765 589999999999999987442 2
Q ss_pred eeeee-----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc--ceEEEEEecCCCCEEEEE
Q 020107 142 LQQWK-----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM--GVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 142 ~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~ 214 (331)
...++ +..-+++.++|+| ++++|++|..||.|.+||.+.......+....+|.. .|+||.|++ ++++|++-
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSR 382 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSR 382 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhc
Confidence 22222 3446789999999 889999999999999999977666666666567887 899999999 99999999
Q ss_pred ecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEe------cCcEEEEEEcCcccceeEEeecCCcc
Q 020107 215 SYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACM------HNGFAVVKVGGEKAEVLETYAKHGSL 287 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~ 287 (331)
+.|+++++||+++.++++.... .....+-+.++|+|+. .+++++.+ .+.+.+++ ......++.+.-.+..
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d--~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFD--RMTLDTVYKIDISTAS 459 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEe--ccceeeEEEecCCCce
Confidence 9999999999999988887621 1223456789999995 44444432 22333343 3335677777766889
Q ss_pred eeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
|..+.|+|.-. ++++++ .||.++++
T Consensus 460 vv~~~WhpkLN--------Qi~~gs--gdG~~~vy 484 (641)
T KOG0772|consen 460 VVRCLWHPKLN--------QIFAGS--GDGTAHVY 484 (641)
T ss_pred EEEEeecchhh--------heeeec--CCCceEEE
Confidence 99999999884 445544 48988875
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=215.98 Aligned_cols=230 Identities=16% Similarity=0.238 Sum_probs=198.3
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ 138 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 138 (331)
..+|+|+.+..+ .+++|..|.++ +||.....+ |.+.|.|+.|. .+.+++|+.|.+|++||.++++
T Consensus 197 skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 457999998665 99999999999 999987654 78999999995 4689999999999999999985
Q ss_pred eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE 218 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 218 (331)
+ +.++-+|...|..+.|+. .++++++.|.++.+||+..+..+.......+|...|+.+.|+ .+++++++.|.
T Consensus 269 ~--l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDR 340 (499)
T KOG0281|consen 269 P--LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR 340 (499)
T ss_pred h--hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCc
Confidence 4 888889999999999974 799999999999999999877554444445599999999995 57999999999
Q ss_pred eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
+|++|++.+. ..+.. +.+|...|-++++.. .+++++++|+.|++|++.. +.++..+.||+.-|.++.|...
T Consensus 341 TikvW~~st~-efvRt-l~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~--G~cLRvLeGHEeLvRciRFd~k-- 411 (499)
T KOG0281|consen 341 TIKVWSTSTC-EFVRT-LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRFDNK-- 411 (499)
T ss_pred eEEEEeccce-eeehh-hhcccccceehhccC---eEEEecCCCceEEEEeccc--cHHHHHHhchHHhhhheeecCc--
Confidence 9999999986 33333 589999999988764 6777777899999999988 7999999999999999999764
Q ss_pred cccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
.+++|+ +||+|++||+..++..
T Consensus 412 ---------rIVSGa-YDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 412 ---------RIVSGA-YDGKIKVWDLQAALDP 433 (499)
T ss_pred ---------eeeecc-ccceEEEEecccccCC
Confidence 799999 9999999999887654
No 60
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=214.28 Aligned_cols=281 Identities=14% Similarity=0.197 Sum_probs=232.2
Q ss_pred eecCcceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 7 ELDGNADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
.|.||...|.+...+|.. ..+|+|+ .||.|+|||+.... ....+..|.+.|..|++... .+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs----------~DG~VkiWnlsqR~--~~~~f~AH~G~V~Gi~v~~~------~~ 122 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGS----------CDGEVKIWNLSQRE--CIRTFKAHEGLVRGICVTQT------SF 122 (433)
T ss_pred hccccccccchhhcCcchhhhhhccc----------cCceEEEEehhhhh--hhheeecccCceeeEEeccc------ce
Confidence 467888888877777654 5789998 69999999999876 44455889999999999875 79
Q ss_pred EEEcCCccE-EEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 86 AQADADGGL-LRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++++.|.++ .|.+.....+ .+.+..+.-+..+..+++++. .|.|||.... .|+..+.-....|.++.|+|.
T Consensus 123 ~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~--~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD--NPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred EEecCCcceeeeeccCCcceeeeccccccccccccccccccccCc--eeeecccccC--CccceeecCCCceeEEecCCC
Confidence 999999999 9987765332 455666666666777888776 6889998765 457777777788999999998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
....|++|..|+.|.+||+|+...+..+.. ...-+.|+|+| ....|+++.+|..+..||++....|+.. ...|.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v-~~dhv 272 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVIL----TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNV-HKDHV 272 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeee----eccccceecCc-cccceeeccccccceehhhhhhcccchh-hcccc
Confidence 888999999999999999999988777765 66778999999 9999999999999999999999888876 67999
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
+.|.++.|+|.| .-+++++.|..|+++.......+.+.-- -.-..|.++.|+.|. ++++||| +|+.|+
T Consensus 273 sAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Ds---------kyi~SGS-dd~nvR 340 (433)
T KOG0268|consen 273 SAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDS---------KYIISGS-DDGNVR 340 (433)
T ss_pred eeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccc---------cEEEecC-CCccee
Confidence 999999999998 6788999999999999987533333211 124579999999998 7999999 999999
Q ss_pred EEcCCCc
Q 020107 321 IWMPESD 327 (331)
Q Consensus 321 iW~~~~~ 327 (331)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987543
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=216.12 Aligned_cols=257 Identities=19% Similarity=0.278 Sum_probs=206.8
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc------cCccEEEEEEcCC
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI------SSSMCLCLEWNPS 116 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~------~~~~v~~~~~~~~ 116 (331)
.-.++.|+-.+.. ...+ ....|.+++|+|..|. -+|+.+.-+.-+++..+... -+..++++.|..|
T Consensus 8 t~e~~~w~~~~~~----~~~k-e~~~vssl~fsp~~P~---d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 8 TPEIRYWRQETFP----PVHK-EHNSVSSLCFSPKHPY---DFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD 79 (487)
T ss_pred Cccchhhhhhccc----cccc-ccCcceeEecCCCCCC---ceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC
Confidence 4456666654432 1212 2357999999998653 45555444433666655433 2577899999999
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM 196 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 196 (331)
|++|++|...|.|++||..+. ..++.+.+|+.++..+.|+|.++..+++|++|+.+++||+.+......+. +|++
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~---~htD 154 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS---GHTD 154 (487)
T ss_pred CeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---CCcc
Confidence 999999999999999996653 34788899999999999999999999999999999999999887433444 4999
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107 197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE 276 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
.|+|.+|+|.++.+++||++||+|++||++....++.+ ..|+.+|.++.+-|. +.++++++.+.+++|++-.. ++
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--lnhg~pVe~vl~lps--gs~iasAgGn~vkVWDl~~G-~q 229 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--LNHGCPVESVLALPS--GSLIASAGGNSVKVWDLTTG-GQ 229 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--ecCCCceeeEEEcCC--CCEEEEcCCCeEEEEEecCC-ce
Confidence 99999999988889999999999999999996555555 899999999999998 45566666788999999865 56
Q ss_pred eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+..+..|...|+++.+..++ ..|+|+| -|+.|++||+.+-
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~---------~rLlS~s-LD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDS---------TRLLSGS-LDRHVKVFDTTNY 270 (487)
T ss_pred ehhhhhcccceEEEEEeecCC---------ceEeecc-cccceEEEEccce
Confidence 666666799999999999988 7999999 9999999996553
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.7e-33 Score=221.48 Aligned_cols=249 Identities=18% Similarity=0.242 Sum_probs=211.1
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSV 129 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i 129 (331)
....+.+|+..|+++.|.|.. +.+|++++.|+.+ ||++... ..|..+|.+++|+++|..+++++.|+.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~---~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKK---GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccce---eeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 455678999999999999943 8899999999999 9987662 3389999999999999999999999999
Q ss_pred EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
++||+++|+. +..+. -...++++.|+|++.+.+++|+.|+.|+.||+|+++.++.+.. |-+.|..+.|-+ ++.
T Consensus 283 KlwDtETG~~--~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---hLg~i~~i~F~~-~g~ 355 (503)
T KOG0282|consen 283 KLWDTETGQV--LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---HLGAILDITFVD-EGR 355 (503)
T ss_pred eeeccccceE--EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh---hhhheeeeEEcc-CCc
Confidence 9999999965 66665 3457899999997779999999999999999999998877777 999999999999 999
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCCc--
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHGS-- 286 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~-- 286 (331)
.+++.+.|++++||+.+.+ .++............++..+|++ ..+++-+.++.+.++.+... .......+.+|..
T Consensus 356 rFissSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 9999999999999999985 66665445556677889999997 77888889999888886543 2344556778854
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
--..+.||||+ ++|++|. .||.+.+||..+-.
T Consensus 434 ys~~v~fSpDG---------~~l~SGd-sdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 434 YSCQVDFSPDG---------RTLCSGD-SDGKVNFWDWKTTK 465 (503)
T ss_pred ceeeEEEcCCC---------CeEEeec-CCccEEEeechhhh
Confidence 44568999999 7999999 99999999987643
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-30 Score=213.26 Aligned_cols=240 Identities=19% Similarity=0.268 Sum_probs=204.9
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
.+|..+|++++|+|+ +++|++++.||.+ +|++.+.+ .+...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 6 ~~h~~~i~~~~~~~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 6 KGHTGGVTCVAFSPD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred cccCCCEEEEEEcCC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 579999999999999 8899999999999 99987653 256778899999999999999999999999998
Q ss_pred ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
+++. ...+..|...+.++.|+| ++.++++++.++.|++||+++++....+.. |...+.++.|+| ++.++++++
T Consensus 82 ~~~~--~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~ 154 (289)
T cd00200 82 TGEC--VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSP-DGTFVASSS 154 (289)
T ss_pred cccc--eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcC-cCCEEEEEc
Confidence 7643 666778888999999998 678888888899999999997776666664 888999999999 788888888
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
.|+.|++||++.. ++... +..|...+.++.|+|++ ..+++++.++.+.+|++.. ++.+..+..|...+.++.|+|
T Consensus 155 ~~~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 155 QDGTIKLWDLRTG-KCVAT-LTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred CCCcEEEEEcccc-cccee-EecCccccceEEECCCc-CEEEEecCCCcEEEEECCC--CceecchhhcCCceEEEEEcC
Confidence 8999999999875 44443 46788899999999996 5677777788999999876 467777778888999999999
Q ss_pred CCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++ .++++++ .|+.|++|++.++.
T Consensus 230 ~~---------~~~~~~~-~~~~i~i~~~~~~~ 252 (289)
T cd00200 230 DG---------YLLASGS-EDGTIRVWDLRTGE 252 (289)
T ss_pred CC---------cEEEEEc-CCCcEEEEEcCCce
Confidence 96 6888887 89999999998643
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=202.56 Aligned_cols=284 Identities=15% Similarity=0.185 Sum_probs=214.7
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc------c----------cceEEeEeeecCcEeEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE------E----------KNLELLYRMDTAGIFDI 72 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~------~----------~~~~~~~~~~~~~v~~~ 72 (331)
.+++.+-+|+|++ .++|+|+ .|-.|+|+|++.. . -++...+-.|..+|+++
T Consensus 112 K~~cR~aafs~DG---~lvATGs----------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 112 KSPCRAAAFSPDG---SLVATGS----------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred ccceeeeeeCCCC---cEEEccC----------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 3445555555555 9999999 8999999998721 0 03333445688999999
Q ss_pred EEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee-e
Q 020107 73 KWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV-L 142 (331)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~ 142 (331)
.|+|. ..+|++|+.|+++ ++|...... ...+|.+++|+|.|.+|++|....++++||+++-+.-. .
T Consensus 179 ~FHPr----e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 179 DFHPR----ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred eecch----hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 99999 8999999999999 999876433 35789999999999999999999999999999864311 1
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
..-..|.+.|+++.+++ .+++.++++.||.|++||--+++++..+.. ......|++..|.. +++++++.+.|..+++
T Consensus 255 nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGN-AHGGSEVCSAVFTK-NGKYILSSGKDSTVKL 331 (430)
T ss_pred CcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHh-hcCCceeeeEEEcc-CCeEEeecCCcceeee
Confidence 12346889999999998 889999999999999999999998888765 22346799999999 9999999999999999
Q ss_pred EEecCCCCCceeeeee-cCCc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 223 WDVRSISKPVNETSVC-LGGG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 223 wd~~~~~~~~~~~~~~-~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
|.+.++ +++.+..-. ..+. -+...|+...+..++---..+.+..|+-+.. .+.-.--.+|++.+..+.-+|.++
T Consensus 332 WEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta-dr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 332 WEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA-DRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch-hhhhhcccCCCCCceEEEeCCCCC
Confidence 999996 555542111 1111 2345566554233332223345556666654 222222348999999999999995
Q ss_pred cccccccCcEEEEeecCCCeEEEEcC
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
-+++|| .|..+|+|--
T Consensus 410 ---------~FmTcs-dD~raRFWyr 425 (430)
T KOG0640|consen 410 ---------AFMTCS-DDFRARFWYR 425 (430)
T ss_pred ---------ceeeec-ccceeeeeee
Confidence 899999 9999999964
No 65
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-30 Score=196.62 Aligned_cols=306 Identities=43% Similarity=0.695 Sum_probs=249.2
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCC--CCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCC-eEEE
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPS--RNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQ 87 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~--~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~ 87 (331)
...+.+||.....++||+|+|.++.+...+ +.|.+.+|++...+. ++..+....+..++.|.|.-.... +. .++-
T Consensus 12 ~~~~~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~-g~~~l~~ 90 (339)
T KOG0280|consen 12 ADPVPICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETD-GDFNLLD 90 (339)
T ss_pred cCCCCccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCC-ccceeee
Confidence 566778887777789999999998873333 789999999987652 245566667788999999865433 45 6777
Q ss_pred EcCCccE-EEecCC------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107 88 ADADGGL-LRDITG------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA 154 (331)
Q Consensus 88 ~~~dg~i-iw~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 154 (331)
+...|.+ ++.... .+.......++.|++.+..++++..+|.+.+.+.....++.++.++.|+.+++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence 8888888 443322 111223467889999999999999999999777777777667789999999999
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
..|+..+++++.+|++|+.+..||+|.++ ...+...+.|...|.+|.-+|..+.+++||++|..|++||.|+..+|+..
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~ 249 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK 249 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence 99998888999999999999999999554 55555445699999999999878999999999999999999999999988
Q ss_pred eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc---eeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE---VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
....+.|+.+.++|.....++++|+.++.++.++.+...+ .....+.|.+.+++.+|.... .+|||
T Consensus 250 --~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~---------~~lAT 318 (339)
T KOG0280|consen 250 --AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD---------SFLAT 318 (339)
T ss_pred --CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccccccc---------ceeee
Confidence 7778999999999987788999999999999999886555 566677899999999995554 69999
Q ss_pred eecCCCeEE-EEcCCCcccC
Q 020107 312 CSFYDRLLR-IWMPESDCLT 330 (331)
Q Consensus 312 ~~~~d~~i~-iW~~~~~~~~ 330 (331)
|++.|+.++ +|-.-++.-.
T Consensus 319 CsFYDk~~~~~Wl~~t~~~t 338 (339)
T KOG0280|consen 319 CSFYDKKIRQLWLHITGEPT 338 (339)
T ss_pred eeccccceeeeeeeccCCcC
Confidence 999999966 9988777644
No 66
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=222.57 Aligned_cols=288 Identities=17% Similarity=0.274 Sum_probs=226.6
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe--ee---cCcEeEEEEcCCCC
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR--MD---TAGIFDIKWSPVGG 79 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~ 79 (331)
.+.++.+...|.-++.. +.+++++ ...++||.+............ .. ...+.++.|..-.
T Consensus 35 ~~~~k~~~nAIs~nr~~---~qiv~AG-----------rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~- 99 (839)
T KOG0269|consen 35 NCKLKAKANAISVNRDI---NQIVVAG-----------RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLY- 99 (839)
T ss_pred eeecccccceEeecCCc---ceeEEec-----------ccceeeEeeCcccCCcceeeecccccceeeehhhcccccch-
Confidence 34577888888888776 6777776 678888888765432222211 11 1236788898543
Q ss_pred CCCCeEEEEcCCccE-EEecCC---Cc------ccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 80 NAGPFLAQADADGGL-LRDITG---EK------ISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i-iw~~~~---~~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
.++||+++.+|.| +||+.. .+ .|...+.++.|++... +|++|+.||.|++||++..+- ...+.+.
T Consensus 100 --~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~n 175 (839)
T KOG0269|consen 100 --SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSN 175 (839)
T ss_pred --hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--ccccccc
Confidence 6699999999999 999987 22 2788999999998664 589999999999999998654 5667778
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
...|++++|+|..++.|+++.+.|.+++||+|.... ...+ .+|.++|.|+.|+| ++.+|||||.|++|+|||+..
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~---~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL---TAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh---hcccCceEEEeecC-CCceeeecCCCccEEEEeccC
Confidence 889999999998899999999999999999998753 3333 44999999999999 999999999999999999986
Q ss_pred CCCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccccccc
Q 020107 228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
.+ +..........+|.+++|-|.....|++++ .+-.+++|+++.. .-+..++..|+..++.++|.....
T Consensus 252 ~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~------- 322 (839)
T KOG0269|consen 252 SR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDR------- 322 (839)
T ss_pred CC-ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCc-------
Confidence 42 222223566789999999999865555544 3567899999886 567788999999999999988554
Q ss_pred CcEEEEeecCCCeEEEEcCCC
Q 020107 306 NSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 306 ~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+.+++ .|++|..-.+++
T Consensus 323 -~~l~s~s-KD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 -INLWSCS-KDGTVLQHLFKN 341 (839)
T ss_pred -eeeEeec-CccHHHHhhhhc
Confidence 6899999 999886655443
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.4e-30 Score=219.36 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=166.3
Q ss_pred cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 104 SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 104 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
|...|.+++|+| ++++|++|+.|++|++||+.++.. .++..+.+|...|.+++|+|...++|++++.|+.|++|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 678999999999 788999999999999999976431 34667889999999999999556899999999999999
Q ss_pred EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeE
Q 020107 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLV 256 (331)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~ 256 (331)
|+++++....+.. |...|.+++|+| ++.+|++++.|++|++||++++ +.+.. ...|.+. +..+.|.+++ ..+
T Consensus 154 Dl~tg~~~~~l~~---h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~t-l~~H~~~~~~~~~w~~~~-~~i 226 (493)
T PTZ00421 154 DVERGKAVEVIKC---HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSS-VEAHASAKSQRCLWAKRK-DLI 226 (493)
T ss_pred ECCCCeEEEEEcC---CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-cEEEE-EecCCCCcceEEEEcCCC-CeE
Confidence 9998876666665 999999999999 9999999999999999999986 44444 4567654 4578899886 566
Q ss_pred EEEEe----cCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 257 LAACM----HNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 257 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++++. ++.+++|++... ...+.....+ ...+....|++++ ++|++++..|+.|++||+.++.+
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d~---------~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDEDT---------NLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCCC---------CEEEEEEeCCCeEEEEEeeCCce
Confidence 66553 567999998765 2344444333 3455566788888 57777762499999999987653
No 68
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=198.84 Aligned_cols=286 Identities=17% Similarity=0.311 Sum_probs=226.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
++||-..|--........++.+++ .|.+.+||.++.+. .+ ..+.+|.+.|++++|++. +.++++
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtAS----------ADhTA~iWs~Esg~-CL-~~Y~GH~GSVNsikfh~s----~~L~lT 207 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTAS----------ADHTARIWSLESGA-CL-ATYTGHTGSVNSIKFHNS----GLLLLT 207 (481)
T ss_pred hcccccceeeehhhcCCcceeecc----------cccceeEEeecccc-ce-eeecccccceeeEEeccc----cceEEE
Confidence 455655554444333335777776 89999999999986 34 455899999999999999 999999
Q ss_pred EcCCccE-EEe------cCCCc----------------------------------------ccCccEEEEEEcCCCCeE
Q 020107 88 ADADGGL-LRD------ITGEK----------------------------------------ISSSMCLCLEWNPSATSI 120 (331)
Q Consensus 88 ~~~dg~i-iw~------~~~~~----------------------------------------~~~~~v~~~~~~~~~~~l 120 (331)
++.|++. ||. +.... .|...|.+..|-..++.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 9999998 765 22100 034566777888889999
Q ss_pred EEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEE
Q 020107 121 TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCC 200 (331)
Q Consensus 121 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 200 (331)
++++.|.+..+||++++.. +..+.+|+...+.++-+| ...++++.+.|.+.++||.+.. ++....+++|...|++
T Consensus 288 vTaSWDRTAnlwDVEtge~--v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEV--VNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeeccccceeeeeccCce--eccccCcchhccccccCC-cceEEEEeccCceeEeccchhh--cceeeeecccccceeE
Confidence 9999999999999999854 888999999999999999 7899999999999999999943 4444445569999999
Q ss_pred EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCccc-cee
Q 020107 201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKA-EVL 278 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 278 (331)
+.|.. +..+++|+.|.+|++||++++..|+.. .....+++.++.+.. +.+++.-.| ..++++++....- ++.
T Consensus 363 ~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplAT--IRtdS~~NRvavs~g--~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 363 VVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLAT--IRTDSPANRVAVSKG--HPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred EEEec--CCceeecCCCceEEEeeeccccCccee--eecCCccceeEeecC--CceEEeccCCceEEEEecCCCccccCC
Confidence 99985 667999999999999999999999988 778889999999987 445555444 4567777765321 111
Q ss_pred -EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 279 -ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 279 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
..-.+|...|++++|..+.+- .-|++|| -|..+.=|+++...
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~-------cnLftcG-FDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPA-------CNLFTCG-FDRMVAGWKINTPT 479 (481)
T ss_pred cccccccceeeeeeeccccCcc-------ccccccc-ccceeeeeEecccC
Confidence 133489999999999987541 4688999 79999999987653
No 69
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=3e-29 Score=214.77 Aligned_cols=223 Identities=14% Similarity=0.140 Sum_probs=176.2
Q ss_pred eEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCC-CeEEEEe
Q 020107 61 LYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSA-TSITVGL 124 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~-~~l~~~~ 124 (331)
.+.+|.+.|++++|+| + +.+|++|+.|+.+ +|++.... .|...|.+++|+|++ +.|++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 3578999999999999 5 7799999999999 99987542 267889999999986 6899999
Q ss_pred cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc-eEEEEE
Q 020107 125 SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG-VCCIAS 203 (331)
Q Consensus 125 ~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~ 203 (331)
.|+.|++||+++++. +..+..|...|.+++|+| ++.+|++++.|+.|++||+++++....+.. |... +..+.|
T Consensus 146 ~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H~~~~~~~~~w 219 (493)
T PTZ00421 146 ADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---HASAKSQRCLW 219 (493)
T ss_pred CCCEEEEEECCCCeE--EEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEec---CCCCcceEEEE
Confidence 999999999998753 677888999999999999 889999999999999999999887666655 7654 456788
Q ss_pred ecCCCCEEEEEe----cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccccee
Q 020107 204 IPSDSNTLLTGS----YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVL 278 (331)
Q Consensus 204 ~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 278 (331)
.+ ++..+++++ .|+.|++||+++...++..........+....|++++ ..+++++ .++.+++|++.+. +.+
T Consensus 220 ~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~--~~~ 295 (493)
T PTZ00421 220 AK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNE--RLT 295 (493)
T ss_pred cC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCC--ceE
Confidence 88 666666654 4789999999987666654222334556677889987 5666665 4888999999874 444
Q ss_pred EEeec-CCcceeeeeecCCC
Q 020107 279 ETYAK-HGSLAYGADWQRGR 297 (331)
Q Consensus 279 ~~~~~-h~~~v~~~~~~~~~ 297 (331)
..... +..++.+++|.|..
T Consensus 296 ~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 296 FCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEeeccCCCCCcceEecccc
Confidence 44432 45567888888864
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.5e-29 Score=187.51 Aligned_cols=277 Identities=18% Similarity=0.297 Sum_probs=223.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+++.+|+|..++ ..||+|+ -|+++.+|+++..........++|.+.|-.++|.|.+ ...|+++
T Consensus 20 ~~~v~Sv~wn~~g---~~lasgs----------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~---~d~~ata 83 (313)
T KOG1407|consen 20 VQKVHSVAWNCDG---TKLASGS----------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH---PDLFATA 83 (313)
T ss_pred hhcceEEEEcccC---ceeeecc----------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC---CcceEEe
Confidence 3567788888877 8999999 6999999999987655666778999999999999987 4599999
Q ss_pred cCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+.|.++ +|++...++. ...-.-+.|+|+|++++++..|..|.+.|.++.+. ....+ ....+..++|+ .++
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~--~~~~~-~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI--VNEEQ-FKFEVNEISWN-NSN 159 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce--eehhc-ccceeeeeeec-CCC
Confidence 999999 9999988763 33334678999999999999999999999987654 33333 34567889999 477
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
++++.....|+|.|.....-+.+..++. |.....||.|+| +|++||+|+.|-.+.+||+... .+... +..+.-+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~A---H~snCicI~f~p-~GryfA~GsADAlvSLWD~~EL-iC~R~-isRldwp 233 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKA---HPSNCICIEFDP-DGRYFATGSADALVSLWDVDEL-ICERC-ISRLDWP 233 (313)
T ss_pred CEEEEecCCceEEEEecccccccccccc---CCcceEEEEECC-CCceEeeccccceeeccChhHh-hhhee-eccccCc
Confidence 8888888789999999887766666666 999999999999 9999999999999999999975 33333 5788999
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD----- 316 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d----- 316 (331)
|..+.|+.+ +.++++++++. .+++.. .++..+..++ ++++-..++|+|.. .+||-+. .|
T Consensus 234 VRTlSFS~d--g~~lASaSEDh--~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~---------~LLAyA~-ddk~~d~ 298 (313)
T KOG1407|consen 234 VRTLSFSHD--GRMLASASEDH--FIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR---------PLLAYAC-DDKDGDS 298 (313)
T ss_pred eEEEEeccC--cceeeccCccc--eEEeEecccCCeEEEee-ccCCceeEEecCCC---------ceeeEEe-cCCCCcc
Confidence 999999999 56677777776 666644 3366666665 67889999999998 4777665 33
Q ss_pred ----CeEEEEcCCC
Q 020107 317 ----RLLRIWMPES 326 (331)
Q Consensus 317 ----~~i~iW~~~~ 326 (331)
|.|+++-+.+
T Consensus 299 ~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 299 NREAGTVKIFGLSN 312 (313)
T ss_pred ccccceeEEecCCC
Confidence 6788876653
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-28 Score=179.28 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=217.7
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc----------cc---eEEeEeeecCcEeEEEEc
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE----------KN---LELLYRMDTAGIFDIKWS 75 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~----------~~---~~~~~~~~~~~v~~~~~~ 75 (331)
...+.+|+|+|.+ .+.|+|+ ...+++|-...... .+ +..-.+.|.+.|+|.+|+
T Consensus 32 sqairav~fhp~g---~lyavgs----------nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 32 SQAIRAVAFHPAG---GLYAVGS----------NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred hhheeeEEecCCC---ceEEecc----------CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 4577888888887 8999998 67788886543211 11 112224478889999999
Q ss_pred CCCCCCCCeEEEEcCCccE-E--EecCCC---------cccCccEEEEEEcCC----CCeEEEEec-CCeEEEEEccccc
Q 020107 76 PVGGNAGPFLAQADADGGL-L--RDITGE---------KISSSMCLCLEWNPS----ATSITVGLS-DGSVSIVSVVESQ 138 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~dg~i-i--w~~~~~---------~~~~~~v~~~~~~~~----~~~l~~~~~-dg~i~i~d~~~~~ 138 (331)
|. +++|++|+.|..+ + ++..+. ..|.+.|..++|..+ +..|++++. |..|++-|...++
T Consensus 99 ~~----geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 99 PC----GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred Cc----cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 99 9999999999999 2 333322 237889999999643 345666655 7777777777664
Q ss_pred eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc----CCCcceEEEEEecCCCCEEEEE
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK----IHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
....+.+|.+.|.++- + .++.++++|+.|.+|++||+|-..++..+.... -....|.+++..| .+++|++|
T Consensus 175 --~~~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg 249 (350)
T KOG0641|consen 175 --GFHALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASG 249 (350)
T ss_pred --cceeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-Ccceeeec
Confidence 4888999999888773 2 356899999999999999999888776664411 1236799999999 99999999
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cceeEEeecCCcceeeee
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~ 292 (331)
-.|....+||++.+ +++.. +.+|...|.++.|+|.. .++++++.+..|++-++...- .-.+.....|...+..+.
T Consensus 250 ~~dssc~lydirg~-r~iq~-f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 250 HADSSCMLYDIRGG-RMIQR-FHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred cCCCceEEEEeeCC-ceeee-eCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 99999999999985 66665 68999999999999986 778888888888888876532 233455668999999999
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
|+|.. --+++.+ .|.++.+|-++
T Consensus 327 wh~~d---------~sfisss-adkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQD---------FSFISSS-ADKTATLWALN 349 (350)
T ss_pred ecCcc---------ceeeecc-CcceEEEeccC
Confidence 99998 4677777 89999999764
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=4.2e-30 Score=199.80 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=198.6
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE--eEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL--LYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+++.++.|...++....|++++ .|.++++|..+.....+.. ..++|...|-++...++ +..++
T Consensus 144 t~~ik~v~~v~~n~~~~~fvsas----------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----gtr~~ 209 (423)
T KOG0313|consen 144 TGPIKSVAWVIKNSSSCLFVSAS----------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----GTRFC 209 (423)
T ss_pred CcceeeeEEEecCCccceEEEec----------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----CCeEE
Confidence 34566666766665445788888 7999999999876643333 33599999999999999 99999
Q ss_pred EEcCCccE-EEecCCCc-------------------------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107 87 QADADGGL-LRDITGEK-------------------------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~-------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 134 (331)
+|+.|..+ +|+..... .|..+|.++.|++ ...+++++.|.+|+.||+
T Consensus 210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence 99999999 99933211 1678899999997 678999999999999999
Q ss_pred cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
++++. +..+.+ ...++++..+| ..++|++|+.|..+++||.|++.-....+.+-+|+..|.++.|+|.+..+|+++
T Consensus 289 etg~~--~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 289 ETGGL--KSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ecccc--eeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 99865 555553 55799999999 889999999999999999998865433333355999999999999888999999
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
+.|+++++||+|+.+.|+.. ..+|...|.++.|+.. ..++++|.|+.++++.-.
T Consensus 365 S~D~t~klWDvRS~k~plyd-I~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAPLYD-IAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecCCeEEEEEeccCCCccee-eccCCceEEEEeccCC--ceEEeccCcceEEEeccc
Confidence 99999999999998768877 6899999999999987 788888899988887644
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.9e-31 Score=201.57 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=207.3
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------------SSSMCLCLEWNPSATSITVGLSDGS 128 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~ 128 (331)
+...-+.|..|+|+ +++|++|+.||.+ +|+..+++. +..+|.|+.|+.|.+.+++|+.||.
T Consensus 211 g~KSh~EcA~FSPD----gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPD----GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCC----CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 44566889999999 9999999999999 999988765 4788999999999999999999999
Q ss_pred EEEEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC
Q 020107 129 VSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD 207 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (331)
|++|.++++.. ++.+. .|...|+++.|+. ++..+++++.|.++++.-+.++++.+.+.. |.+.|+...|.+ +
T Consensus 287 IKvWri~tG~C--lRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSyvn~a~ft~-d 359 (508)
T KOG0275|consen 287 IKVWRIETGQC--LRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSYVNEATFTD-D 359 (508)
T ss_pred EEEEEEecchH--HHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcC---ccccccceEEcC-C
Confidence 99999999954 77776 8999999999997 788899999999999999999999988888 999999999999 9
Q ss_pred CCEEEEEecCCeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec---
Q 020107 208 SNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--- 283 (331)
Q Consensus 208 ~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 283 (331)
|..+++++.||+|++|+.++. .++.. ...+...+|.++..-|..+..++++-..+.+.+.++. ++.+.++..
T Consensus 360 G~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---GQvVrsfsSGkR 435 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---GQVVRSFSSGKR 435 (508)
T ss_pred CCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---ceEEeeeccCCc
Confidence 999999999999999999986 44433 2234566899999999887888887777776665554 677777762
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
..+...++..+|.| .++...+ +|+.++.+.+.+|.+.
T Consensus 436 EgGdFi~~~lSpkG---------ewiYcig-ED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 436 EGGDFINAILSPKG---------EWIYCIG-EDGVLYCFSVLSGKLE 472 (508)
T ss_pred cCCceEEEEecCCC---------cEEEEEc-cCcEEEEEEeecCcee
Confidence 23456677889998 6999999 9999999999888765
No 74
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.2e-29 Score=213.51 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=181.8
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------------cccCc
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------------KISSS 106 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------------~~~~~ 106 (331)
..+.|++|+..... ....+.+|...|.+++|+|++ +.+|++|+.||.+ +|++... ..|..
T Consensus 52 ~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 52 LIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred ceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 67899999987653 344457899999999999974 5699999999999 9998753 12678
Q ss_pred cEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 107 MCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 107 ~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
.|.+++|+|++.. |++++.|++|++||+++++. ...+. |...|.+++|+| ++.+|++++.|+.|+|||+++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEE
Confidence 8999999999876 57889999999999998754 44454 556899999998 8899999999999999999998877
Q ss_pred eeeecccCCCcceEEE-----EEecCCCCEEEEEecCC----eEEEEEecCCCCCceeeeeecCCceEE--EEECCCCCC
Q 020107 186 LAFQNSKIHKMGVCCI-----ASIPSDSNTLLTGSYDE----YLRVWDVRSISKPVNETSVCLGGGVWR--IKHHPFIPG 254 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~-----~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~ 254 (331)
..+.. |.+.+.+. .|++ ++.+|++++.|+ .|+|||++....++.. ..+...... -.|.++...
T Consensus 203 ~tl~g---H~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~--~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 203 SSFHI---HDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVT--MSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred EEEec---ccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEE--EEecCCccceEEeeeCCCCC
Confidence 66665 77665433 3457 778889888774 7999999976677765 333322222 233344326
Q ss_pred eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 255 LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
++++++.|+.+++|++.......+..+. +..++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 6777778999999999764333333333 56788899999975
No 75
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=190.39 Aligned_cols=297 Identities=22% Similarity=0.323 Sum_probs=224.6
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
++....|+.--.-..+.-.|.+|+..+. .++.|.+.+++..... ....+..|.+.|..++-+|.+ ..+|+
T Consensus 10 le~qAR~lT~qtad~d~icFlvgTnslK------~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d---~~ila 80 (370)
T KOG1007|consen 10 LEYQARCLTPQTADRDHICFLVGTNSLK------EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFD---QRILA 80 (370)
T ss_pred eeeeeeecCccccCccceEEEEeccccC------CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCC---CceEE
Confidence 4444455543333333457888874333 4789999988876533 445556677889999999985 55777
Q ss_pred EEcCC----ccE----EEecCCCcc----------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107 87 QADAD----GGL----LRDITGEKI----------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 87 ~~~~d----g~i----iw~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 142 (331)
++..+ |.+ ||.+..... +-+.|.|+.|.|++..+++-. |..|.+|++..+... +
T Consensus 81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-v 158 (370)
T KOG1007|consen 81 TVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-V 158 (370)
T ss_pred EEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-h
Confidence 76542 222 998865321 235789999999998888766 789999999875421 2
Q ss_pred eee-----ecccceeEEEeeCC-CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 143 QQW-----KAHEFELWATSFDV-HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 143 ~~~-----~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
..+ ..+....++-+|+| ++++.+++.+ |+++..||+|+.++...+. .+|...|+.+.|+|....+|++|+.
T Consensus 159 aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 159 AEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred eeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCC
Confidence 222 23566788999999 4667776655 8999999999876655444 4699999999999977788999999
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----------------------
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK---------------------- 274 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 274 (331)
||.|++||.|+.+.|+.+ +.+|...|++++|+|..+.+++++++|..+.++......
T Consensus 236 dgyvriWD~R~tk~pv~e-l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQE-LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred CccEEEEeccCCCccccc-cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 999999999998888887 789999999999999888899999998887776543211
Q ss_pred -----cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 275 -----AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 275 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...+.++..|...|++++|+.-.| .++|+-+ +||++.|=++....
T Consensus 315 ~kpL~dg~l~tydehEDSVY~~aWSsadP--------WiFASLS-YDGRviIs~V~r~~ 364 (370)
T KOG1007|consen 315 VKPLQDGQLETYDEHEDSVYALAWSSADP--------WIFASLS-YDGRVIISSVPRFL 364 (370)
T ss_pred cccccccccccccccccceEEEeeccCCC--------eeEEEec-cCceEEeecCChhh
Confidence 234567889999999999999998 8999999 99999998776543
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=210.13 Aligned_cols=235 Identities=17% Similarity=0.256 Sum_probs=201.0
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+..+.+|.|++.+ .+||+|. .+|.|.|||..+.. .+..+...|...|-+++|+.. .+.+|
T Consensus 217 ~~~vtSv~ws~~G---~~LavG~----------~~g~v~iwD~~~~k-~~~~~~~~h~~rvg~laW~~~------~lssG 276 (484)
T KOG0305|consen 217 EELVTSVKWSPDG---SHLAVGT----------SDGTVQIWDVKEQK-KTRTLRGSHASRVGSLAWNSS------VLSSG 276 (484)
T ss_pred CCceEEEEECCCC---CEEEEee----------cCCeEEEEehhhcc-ccccccCCcCceeEEEeccCc------eEEEe
Confidence 6788999999988 8999999 89999999998876 455553338999999999976 99999
Q ss_pred cCCccE-EEecCCC-------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 DADGGL-LRDITGE-------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 ~~dg~i-iw~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
+.++.+ .+++... +.|...|..++|++++.++|+|+.|+.+.|||.... ++...+..|...|.+++|+|.
T Consensus 277 sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--~p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--EPKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred cCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--cccEEEeccceeeeEeeeCCC
Confidence 999999 7777653 347899999999999999999999999999999654 457888899999999999999
Q ss_pred CCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE--ecCCeEEEEEecCCCCCceeee
Q 020107 161 QPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 161 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
...+||+|+ .|+.|++||..++..+..+.. ...|++|.|++ ..+-|+++ ..++.|.||+..+.+. +.. +
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt----gsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~-~~~-l 427 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT----GSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKL-VAE-L 427 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcCCCcEeccccc----CCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccce-eee-e
Confidence 999999976 789999999999987777664 78899999999 55444443 3567899999998643 333 5
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.+|...|..++++|++ ..+++++.|..+++|++++.
T Consensus 428 ~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence 8999999999999998 78889999999999999985
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=9.6e-30 Score=202.12 Aligned_cols=222 Identities=18% Similarity=0.233 Sum_probs=183.2
Q ss_pred EEecCCCcccCccEEEEEEcCCCCe-EEEEecCCeEEEEEcccc--------ceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107 95 LRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVES--------QLEVLQQWKAHEFELWATSFDVHQPHMV 165 (331)
Q Consensus 95 iw~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (331)
.+++...-.|.+.|+.+.+.|+... +++.+..+.|.|||..+. ...+-..+.+|...-++++|++.....+
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 3444444557888999999997765 566677999999998762 2233447889998889999999888899
Q ss_pred EEEcCCCeEEEEEccCCCc----eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 166 YTGSDDCKFSGWDIRESPF----KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
++++.|+.|++||+..... +.....+.+|...|..++|+|.+..+|++++.|+.+.|||+|+...+......+|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 9999999999999986543 222333455999999999999889999999999999999999632333333589999
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
+|++++|+|.+..++++++.|+.+.+|++++. ...+.++.+|...|..+.|+|... ..|||+| .|+.+.+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-~~~lh~~e~H~dev~~V~WSPh~e--------tvLASSg-~D~rl~v 343 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNL-NKPLHTFEGHEDEVFQVEWSPHNE--------TVLASSG-TDRRLNV 343 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhc-ccCceeccCCCcceEEEEeCCCCC--------ceeEecc-cCCcEEE
Confidence 99999999998666777777999999999998 568899999999999999999987 8999999 9999999
Q ss_pred EcCCC
Q 020107 322 WMPES 326 (331)
Q Consensus 322 W~~~~ 326 (331)
||+..
T Consensus 344 WDls~ 348 (422)
T KOG0264|consen 344 WDLSR 348 (422)
T ss_pred Eeccc
Confidence 99864
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.6e-29 Score=187.79 Aligned_cols=263 Identities=17% Similarity=0.268 Sum_probs=206.2
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+..+.+++|+|... .++++|+ -||+||+|+++............|.++|.+++|+.+ +..+++|
T Consensus 27 ~DsIS~l~FSP~~~--~~~~A~S----------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd----gskVf~g 90 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--NLLAAGS----------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD----GSKVFSG 90 (347)
T ss_pred ccchheeEeccccC--ceEEecc----------cCCceEEEEEecCCcccchhhhccCCCeEEEEEccC----CceEEee
Confidence 45678899999432 6777888 699999999988532344555678999999999999 9999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCC--eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
+.|+.+ +||+.+++. |..+|.++.|-+... .|++|+.|.+|+.||.+.... +..+. -.+.++++..-
T Consensus 91 ~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~~-LPeRvYa~Dv~-- 165 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATLQ-LPERVYAADVL-- 165 (347)
T ss_pred ccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeeee-ccceeeehhcc--
Confidence 999999 999999875 899999999987665 799999999999999997643 55555 34567777753
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
..+++.+..+..|.+|+++++..+..... ..-.-.++||+..+ +....+.|+-+|.+-+..+..+.......+.-|.
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 36788888899999999987654322222 12455689999998 7777799999999999998875222222234554
Q ss_pred C---------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 241 G---------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 241 ~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
. .|++|+|+|.. +.++++|+|+.+.+|+-.. ...+.+...|..+|++..|+.+|.
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkda--r~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA--RTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred cCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchh--hhhhhccCcCCCccceeEecCCCC
Confidence 2 57889999976 8999999999877776555 356777788999999999999994
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-28 Score=185.90 Aligned_cols=241 Identities=16% Similarity=0.175 Sum_probs=195.2
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEec--CCeEEEEE
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLS--DGSVSIVS 133 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d 133 (331)
+.....|+++.|+++ |..|++++.|..+ +++...+.. ++-.+..++|......++.++. |.+|+..+
T Consensus 11 ~~~~~~i~sl~fs~~----G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 11 RETNGKINSLDFSDD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccCCCceeEEEecCC----CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 445678999999999 9999999999888 999887765 2446677888777777777766 89999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
+.+++. ++.+.+|...|.+++.+| .++.+++++.|++|++||+|..++...+.. ..-..++|.| .|-++|+
T Consensus 87 l~dNky--lRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfDp-~GLifA~ 157 (311)
T KOG1446|consen 87 LHDNKY--LRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFDP-EGLIFAL 157 (311)
T ss_pred eecCce--EEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec-----CCCcceeECC-CCcEEEE
Confidence 998865 999999999999999999 669999999999999999998887666654 2334578999 9999999
Q ss_pred EecCCeEEEEEecCC-CCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce--
Q 020107 214 GSYDEYLRVWDVRSI-SKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA-- 288 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-- 288 (331)
+...+.|++||+|+. +.|...+.. +.....+.|.|+|+| ..++.+...+.+.+++-.+ +..+.++.++...-
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~--G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFD--GTVKSTFSGYPNAGNL 234 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccC--CcEeeeEeeccCCCCc
Confidence 988889999999986 445554222 235678999999999 5556666677766666655 67888888765533
Q ss_pred -eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 289 -YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+..|.|++ +++++|+ .||+|.+|+++++..
T Consensus 235 ~~~a~ftPds---------~Fvl~gs-~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 235 PLSATFTPDS---------KFVLSGS-DDGTIHVWNLETGKK 266 (311)
T ss_pred ceeEEECCCC---------cEEEEec-CCCcEEEEEcCCCcE
Confidence 578899999 7999999 999999999988753
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=215.22 Aligned_cols=261 Identities=18% Similarity=0.248 Sum_probs=221.3
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
.++++++ .+++|++|+..... .+..-+.+|.+.|.++++... +.+|++|+.|.++ +|+..++.+
T Consensus 219 ~~~~~~s----------~~~tl~~~~~~~~~-~i~~~l~GH~g~V~~l~~~~~----~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 219 GFFKSGS----------DDSTLHLWDLNNGY-LILTRLVGHFGGVWGLAFPSG----GDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred CeEEecC----------CCceeEEeecccce-EEEeeccCCCCCceeEEEecC----CCEEEEEecCCcEEeEecCCCcE
Confidence 6788887 79999999999886 344436899999999999975 7799999999999 999998876
Q ss_pred ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
|.+.+.++... ...+++|+.|.+|++|+++++.. +..+.+|..+|.++..+ +.++++|+.|++|++|
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~--l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC--LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVW 356 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce--EEEeccccccEEEEEec---CCEEEEEecCceEEEE
Confidence 67888887764 35688889999999999998754 77788899999999986 5899999999999999
Q ss_pred EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
|+++++++..+.. |...|+++.+.+ . ..+++|+.|++|++||+++..+++.. +..|.+-+..+.+.. ..++
T Consensus 357 ~~~~~~cl~sl~g---H~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-l~~h~~~v~~l~~~~---~~Lv 427 (537)
T KOG0274|consen 357 DPRTGKCLKSLSG---HTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHT-LQGHTSLVSSLLLRD---NFLV 427 (537)
T ss_pred EhhhceeeeeecC---CcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhh-hcCCccccccccccc---ceeE
Confidence 9999999999888 999999998865 3 89999999999999999996345554 578888887777665 5788
Q ss_pred EEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 258 AACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
+++.++.+++|+... ++.+.++.+ |...|+.+.+. + ..+++++ .|+.+++||+.++...
T Consensus 428 s~~aD~~Ik~WD~~~--~~~~~~~~~~~~~~v~~l~~~-~----------~~il~s~-~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEE--GECLRTLEGRHVGGVSALALG-K----------EEILCSS-DDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccccccEEEeeccc--CceeeeeccCCcccEEEeecC-c----------ceEEEEe-cCCeeEEEecccCchh
Confidence 888889899998877 688888888 77899999887 2 3677777 8999999999988654
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.7e-29 Score=187.12 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=197.8
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-c-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-K-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
....+.|.+|+|||.. ..++++++.||++ +|+++.. . .+.++|.+++|+.+|..+++|+.|+++++||
T Consensus 24 ~pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEecccc---CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 4456779999999953 5577799999999 9999873 2 2689999999999999999999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCc--EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPH--MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
+.+++ +..+..|..+|..+.|-+ ... .|++|+-|.+|+.||.|....+..++. ...++++..- ..++
T Consensus 101 L~S~Q---~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv~---~pm~ 169 (347)
T KOG0647|consen 101 LASGQ---VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL----PERVYAADVL---YPMA 169 (347)
T ss_pred ccCCC---eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeec----cceeeehhcc---Ccee
Confidence 99986 456778999999999986 444 899999999999999999888877776 6788888774 4688
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-----
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS----- 286 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 286 (331)
+++..++.|.+|+++++.........+..-.+.+++..++.++. +.++-++.+.+..+.....+.-.+|+.|..
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce-EeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 88889999999999886555444445566678999999988554 677788888888888754567778888863
Q ss_pred ----ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 287 ----LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 287 ----~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+|.+++|+|.- ..|+|+| .||+..+||-+.
T Consensus 249 ~~VYaVNsi~FhP~h---------gtlvTaG-sDGtf~FWDkda 282 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVH---------GTLVTAG-SDGTFSFWDKDA 282 (347)
T ss_pred CceEEecceEeeccc---------ceEEEec-CCceEEEecchh
Confidence 57789999987 6999999 899999999654
No 82
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=184.07 Aligned_cols=238 Identities=20% Similarity=0.268 Sum_probs=189.6
Q ss_pred CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEe
Q 020107 21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRD 97 (331)
Q Consensus 21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~ 97 (331)
+-+|.+||+++ .|++|+||....+.. .+...+.+|.++|..++|.. .. |.+||+++.||++ ||.
T Consensus 20 DyygkrlATcs----------SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~---G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 20 DYYGKRLATCS----------SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKF---GTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhcceeeeec----------CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccccc---CcEeeEeecCceEEEEe
Confidence 34458999998 899999999987653 35555699999999999975 32 8899999999999 999
Q ss_pred cCCCcc--------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEeeCCCC--C--
Q 020107 98 ITGEKI--------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQ--P-- 162 (331)
Q Consensus 98 ~~~~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~-- 162 (331)
-.+++- |...|++++|.|. |-.|++++.||.|.+.+.+.. .....+....|...|++++|.|.. +
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887643 7899999999985 457999999999999998875 444455667899999999999841 1
Q ss_pred ---------cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC---CCEEEEEecCCeEEEEEecCCCC
Q 020107 163 ---------HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 163 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~ 230 (331)
+.|++|+.|..|+||+...++-+..-. ..+|.+.|+.++|.|.. ..+||++++||++.||-.+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~-l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT-LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhh-hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998864322222 24599999999999943 35799999999999998875322
Q ss_pred Cce-eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 231 PVN-ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 231 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+.. ..+......++++.|++.+ ..|.+++.++.+.+|+-...
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCC
Confidence 222 2234577889999999998 78888888898888876554
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-28 Score=184.77 Aligned_cols=262 Identities=14% Similarity=0.223 Sum_probs=210.8
Q ss_pred EEEEEeecccCCCCCCCCCcEEEEeccCccc------c----eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-
Q 020107 26 VLAASTYTLQEGDKPSRNGSISLFNVNAEEK------N----LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL- 94 (331)
Q Consensus 26 ~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~----~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i- 94 (331)
.+++|+| ...|.-+++....+ . ....+..|.++|++++.+-. ++|+|+.|-+|
T Consensus 3 ~iIvGtY----------E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~------~~aSGssDetI~ 66 (362)
T KOG0294|consen 3 EIIVGTY----------EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP------YVASGSSDETIH 66 (362)
T ss_pred eEEEeee----------eeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce------eEeccCCCCcEE
Confidence 4778886 66777777654331 1 12234668999999999755 99999999999
Q ss_pred EEecCCCcc------cCccEEEEEEcCCCC--eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107 95 LRDITGEKI------SSSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY 166 (331)
Q Consensus 95 iw~~~~~~~------~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (331)
|+|+..... |.+.|+++.|.+... .|++|+.||.|.+|+.. .+..+..+++|...|+.++.+| .+++.+
T Consensus 67 IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~--~W~~~~slK~H~~~Vt~lsiHP-S~KLAL 143 (362)
T KOG0294|consen 67 IYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG--SWELLKSLKAHKGQVTDLSIHP-SGKLAL 143 (362)
T ss_pred EEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC--CeEEeeeecccccccceeEecC-CCceEE
Confidence 999987654 689999999998765 79999999999999986 4577999999999999999999 889999
Q ss_pred EEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107 167 TGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI 246 (331)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 246 (331)
+.+.|+.+++||+-+++....... ....+.+.|+| .|.+++.++.++ |-+|.+.+. ....+ ......+.++
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~A-~v~~~--i~~~~r~l~~ 214 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSP-QGDHFVVSGRNK-IDIYQLDNA-SVFRE--IENPKRILCA 214 (362)
T ss_pred EEcCCceeeeehhhcCccceeecc----CCcceeeEEcC-CCCEEEEEeccE-EEEEecccH-hHhhh--hhccccceee
Confidence 999999999999999987766665 33445599999 899888888754 899999874 33433 3444678888
Q ss_pred EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.|... +.+++++.+..+.+++..+ ..+...+.+|...|-++.+-.+. ...+|+|+| .||.|++||++.
T Consensus 215 ~~l~~--~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~-------~~~~lvTaS-SDG~I~vWd~~~ 282 (362)
T KOG0294|consen 215 TFLDG--SELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNP-------EHEYLVTAS-SDGFIKVWDIDM 282 (362)
T ss_pred eecCC--ceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecC-------CceEEEEec-cCceEEEEEccc
Confidence 88776 7888888888877887776 57888899999999999854431 127999999 899999999987
Q ss_pred c
Q 020107 327 D 327 (331)
Q Consensus 327 ~ 327 (331)
.
T Consensus 283 ~ 283 (362)
T KOG0294|consen 283 E 283 (362)
T ss_pred c
Confidence 6
No 84
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=192.35 Aligned_cols=245 Identities=17% Similarity=0.280 Sum_probs=194.9
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
..+..|+..|++++.+|+ .+++++|+.|... +|++.++.. |+..|.++.|+.+|.+||+|.-+|.|+||
T Consensus 58 ~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred eehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 345789999999999997 7899999999998 999998765 79999999999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
+..++.. ...+...-..+.-+.|+| ....|++|+.||.+-+|.+.++...+.+.. |..++++=.|.| +|+.++
T Consensus 134 ~~stg~~--~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~ct~G~f~p-dGKr~~ 206 (399)
T KOG0296|consen 134 KVSTGGE--QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSPCTCGEFIP-DGKRIL 206 (399)
T ss_pred EcccCce--EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecC---CCCCcccccccC-CCceEE
Confidence 9998764 334433455688899999 889999999999999999998766777766 999999999999 999999
Q ss_pred EEecCCeEEEEEecCCCCCceeeee--------------------------------------------------ecCCc
Q 020107 213 TGSYDEYLRVWDVRSISKPVNETSV--------------------------------------------------CLGGG 242 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------~~~~~ 242 (331)
++..||+|++||+.++ +|+..... .+...
T Consensus 207 tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred EEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 9999999999999986 44433110 01111
Q ss_pred eEEEEECCCCC--CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 243 VWRIKHHPFIP--GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 243 v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
+.++.+.|... .+.++++.++.+.+|++... .++..-.|...|+.+.|-++ .+|+++. .||.|+
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~---~~R~~c~he~~V~~l~w~~t----------~~l~t~c-~~g~v~ 351 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAAS---TLRHICEHEDGVTKLKWLNT----------DYLLTAC-ANGKVR 351 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEecccc---hhheeccCCCceEEEEEcCc----------chheeec-cCceEE
Confidence 22233333211 23445556778888887763 33344468899999999994 4888888 899999
Q ss_pred EEcCCCcccC
Q 020107 321 IWMPESDCLT 330 (331)
Q Consensus 321 iW~~~~~~~~ 330 (331)
.||..+|.+.
T Consensus 352 ~wDaRtG~l~ 361 (399)
T KOG0296|consen 352 QWDARTGQLK 361 (399)
T ss_pred eeeccccceE
Confidence 9999999875
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.9e-30 Score=200.98 Aligned_cols=274 Identities=18% Similarity=0.179 Sum_probs=224.5
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
..++.+..|.|.+.. ..|++|+ .|..|++|+.......+...+.+..++|+++.|.++ +..++
T Consensus 173 ~h~gev~~v~~l~~s---dtlatgg----------~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----~~~~i 235 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNS---DTLATGG----------SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----NKHVI 235 (459)
T ss_pred ccccccceeEEccCc---chhhhcc----------hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----CceEE
Confidence 356788899999887 7899998 799999999987764455566777889999999999 88999
Q ss_pred EEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 87 QADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+++.|+.+ +|++...+ .|...|+++.|......+++|+.|.+|++||+.... +.+++.. ...+..|..+
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~--C~kt~l~-~S~cnDI~~~- 311 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY--CSKTVLP-GSQCNDIVCS- 311 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh--eeccccc-cccccceEec-
Confidence 99999999 99998654 389999999998877779999999999999998753 3554432 3346667665
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-- 237 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-- 237 (331)
...+++|..|++|++||+++..+...... .+.|+++..++ ++..+++++.|.++.+.|+++. ..... +.
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~-eI~~~-~sA~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTK-EIRQT-FSAE 382 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeec----CcceeeEeecc-CCeEEeeecCCCceeeeecccc-cEEEE-eecc
Confidence 36789999999999999999988777776 45999999999 9999999999999999999984 22222 11
Q ss_pred --ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc--ceeeeeecCCCCcccccccCcEEEEee
Q 020107 238 --CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 238 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
......+.+.|||++ .+++++++++.+++|.+.. +++...+..... .|++++|+|.| ..|++++
T Consensus 383 g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG---------~~Llsad 450 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSG---------SGLLSAD 450 (459)
T ss_pred ccccccccceeEECCCC-ceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCC---------chhhccc
Confidence 223458899999997 7888888999999999988 466666664433 59999999999 6999999
Q ss_pred cCCCeEEEEc
Q 020107 314 FYDRLLRIWM 323 (331)
Q Consensus 314 ~~d~~i~iW~ 323 (331)
.++.+.+|.
T Consensus 451 -k~~~v~lW~ 459 (459)
T KOG0288|consen 451 -KQKAVTLWT 459 (459)
T ss_pred -CCcceEecC
Confidence 999999994
No 86
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.7e-29 Score=195.88 Aligned_cols=277 Identities=15% Similarity=0.144 Sum_probs=210.3
Q ss_pred eeecCcceeEeeecC----CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107 6 CELDGNADAVEFCPQ----DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~----~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
+.+...+.|++|... +..|+|+|+|+ -+..|.|||++-....+-.+.-+... +..
T Consensus 170 ~ilpafPLC~ewld~~~~~~~~gNyvAiGt----------mdp~IeIWDLDI~d~v~P~~~LGs~~-------sk~---- 228 (463)
T KOG0270|consen 170 FILPAFPLCIEWLDHGSKSGGAGNYVAIGT----------MDPEIEIWDLDIVDAVLPCVTLGSKA-------SKK---- 228 (463)
T ss_pred eeccCcchhhhhhhcCCCCCCCcceEEEec----------cCceeEEeccccccccccceeechhh-------hhh----
Confidence 345667789999766 34468999999 58899999997644211111111000 000
Q ss_pred CCeEEEEcCCccEEEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 82 GPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
.--. -..-.....|...|.+++|+..- +.||+|+.|.+|.+||+.++++ ...+..|...|.++.|+|.
T Consensus 229 ---~~k~------~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--~~s~~~~~k~Vq~l~wh~~ 297 (463)
T KOG0270|consen 229 ---KKKK------GKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP--KSSITHHGKKVQTLEWHPY 297 (463)
T ss_pred ---hhhh------cccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc--ceehhhcCCceeEEEecCC
Confidence 0000 00001123366677778777644 4689999999999999999865 6777789999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
.+..|++|+.|++|.+.|.|... .-..++. .+.|-.++|.|.....++++..||+|+-+|+|+..+++.+ ...|
T Consensus 298 ~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-~~AH 372 (463)
T KOG0270|consen 298 EPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-LKAH 372 (463)
T ss_pred CceEEEeccccceEEeeeccCccccCceEEe----ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-EEec
Confidence 99999999999999999999533 2345554 7789999999988899999999999999999998888877 7899
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
.++|.++++++..++++.+++.+..+++|++...+++.+....-.-+...++++.|+-+ .++|.|| ..+.+
T Consensus 373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a--------~~la~GG-~k~~~ 443 (463)
T KOG0270|consen 373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA--------FTLAFGG-EKAVL 443 (463)
T ss_pred cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc--------eEEEecC-ccceE
Confidence 99999999999998999999999999999998876655544333334466788888876 7899999 88899
Q ss_pred EEEcCCCcc
Q 020107 320 RIWMPESDC 328 (331)
Q Consensus 320 ~iW~~~~~~ 328 (331)
+|||+.+..
T Consensus 444 ~vwd~~~~~ 452 (463)
T KOG0270|consen 444 RVWDIFTNS 452 (463)
T ss_pred EEeecccCh
Confidence 999987753
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.3e-28 Score=202.46 Aligned_cols=287 Identities=15% Similarity=0.223 Sum_probs=232.4
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-------eEEeEeeecCcEeEEEEcCCCC
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-------LELLYRMDTAGIFDIKWSPVGG 79 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~ 79 (331)
.....+.++.|.|.....+.|+.- .++.+.+|.++..... -.....+|...|.++++|.+
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l-----------~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-- 384 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLL-----------ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-- 384 (888)
T ss_pred echhheeEEEEEecCCcceeEEEe-----------ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--
Confidence 445567888998887655556654 4889999988762211 12345689999999999999
Q ss_pred CCCCeEEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 80 NAGPFLAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 80 ~~~~~l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
...+++|+.+...+|+..+.++ ....+.+..|.|.++++++|...|.+.+||+..... +...++|++.++++
T Consensus 385 --~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l--~Eti~AHdgaIWsi 460 (888)
T KOG0306|consen 385 --SILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL--VETIRAHDGAIWSI 460 (888)
T ss_pred --ceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh--hhhhhccccceeee
Confidence 6677777666666999998776 345788999999999999999999999999998754 67778999999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCC-----Cceeeeecc----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRES-----PFKLAFQNS----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
+.+| ++..+++|+.|.+|++||..-- ...+.+... -.-...|.|+.++| ++.+|+++-.|.++++|-+.
T Consensus 461 ~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 461 SLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred eecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEec
Confidence 9999 8899999999999999998531 111112110 00256799999999 99999999999999999999
Q ss_pred CCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccC
Q 020107 227 SISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKN 306 (331)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 306 (331)
+.+--+. +.+|.-||.++..+|++ .++++++.|..+++|-+.- +.+-..+-+|...|.++.|.|..
T Consensus 539 tlKFfls--LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~--------- 604 (888)
T KOG0306|consen 539 TLKFFLS--LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKT--------- 604 (888)
T ss_pred ceeeeee--ecccccceeEEeccCCc-CeEEeccCCCceEEecccc--chhhhhhhcccCceeEEEEcccc---------
Confidence 8643333 58999999999999997 7778888888888888776 68888899999999999999987
Q ss_pred cEEEEeecCCCeEEEEcCCCc
Q 020107 307 SLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 307 ~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.++.|+| .|+.|+-||-++-
T Consensus 605 ~~FFt~g-KD~kvKqWDg~kF 624 (888)
T KOG0306|consen 605 HLFFTCG-KDGKVKQWDGEKF 624 (888)
T ss_pred eeEEEec-CcceEEeechhhh
Confidence 7999999 9999999986653
No 88
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.3e-27 Score=204.26 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=164.8
Q ss_pred EcCCccE-EEecCCC------cccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccce------eeeeeeecccceeE
Q 020107 88 ADADGGL-LRDITGE------KISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQL------EVLQQWKAHEFELW 153 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~v~ 153 (331)
|+.++.+ +|+.... ..|...|.+++|+|+ +++|++|+.||.|++||+.++.. .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 3445555 7765442 237889999999997 78999999999999999976421 23456788999999
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
+++|+|....++++++.|+.|++||+++++....+. |...|.+++|+| ++.+|++++.|+.|++||++++ ..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~i~ 203 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EIAS 203 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cEEE
Confidence 999999554567899999999999999887554443 567899999999 9999999999999999999985 4444
Q ss_pred eeeeecCCceEE-----EEECCCCCCeEEEEEecC----cEEEEEEcCcccceeEEee--cCCcceeeeeecCCCCcccc
Q 020107 234 ETSVCLGGGVWR-----IKHHPFIPGLVLAACMHN----GFAVVKVGGEKAEVLETYA--KHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 234 ~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~ 302 (331)
. +..|.+.+.. ..|++++ ..++++|.++ .+++|++... .+.+..+. .+.+.+......+++
T Consensus 204 t-l~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~-~~pl~~~~ld~~~~~L~p~~D~~tg----- 275 (568)
T PTZ00420 204 S-FHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT-TSALVTMSIDNASAPLIPHYDESTG----- 275 (568)
T ss_pred E-EecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC-CCceEEEEecCCccceEEeeeCCCC-----
Confidence 3 4678776533 3345775 6777777664 5899998864 34444433 333333333333444
Q ss_pred cccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.++++|+ .|+.|++|++..+.
T Consensus 276 ----~l~lsGk-GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 276 ----LIYLIGK-GDGNCRYYQHSLGS 296 (568)
T ss_pred ----CEEEEEE-CCCeEEEEEccCCc
Confidence 6888998 89999999997664
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=183.80 Aligned_cols=254 Identities=16% Similarity=0.200 Sum_probs=202.3
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------ccCccEEEEEEcC--CCCeEEEEec
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------ISSSMCLCLEWNP--SATSITVGLS 125 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~ 125 (331)
+..+...|...|.++...-- ++.||+++.|+++ |+.++... .|.++|..++|.. .|.+||+++.
T Consensus 3 ~q~idt~H~D~IHda~lDyy----gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDYY----GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred ceehhhhhhhhhhHhhhhhh----cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 44556778888888888777 8899999999999 88776544 2799999999976 8999999999
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI 204 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 204 (331)
||.|.||.-+.+++........|...|++++|.|++ +-.|++++.||.|.|.+.+....-..-.....|.-.|++++|.
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 999999999999887788888999999999999965 4578889999999999998752111111123499999999999
Q ss_pred cCC--C-----------CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC---CCeEEEEEecCcEEEE
Q 020107 205 PSD--S-----------NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI---PGLVLAACMHNGFAVV 268 (331)
Q Consensus 205 ~~~--~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~ 268 (331)
|.. + +.|++|+.|..|+||+..+..-.+...+..|...|..++|.|.- ...+++++.|+.+.+|
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 831 2 56999999999999999986444445578999999999999964 2356666677888888
Q ss_pred EEcCcccc-eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 269 KVGGEKAE-VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 269 ~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
....+..+ ....+......++.+.||+.+ ++|+.++ .|+.|.+|.-+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sG---------n~LaVs~-GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSG---------NILAVSG-GDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccc---------cEEEEec-CCcEEEEEEeC
Confidence 88754222 222334456789999999999 6888888 89999999854
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3e-28 Score=212.56 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=219.5
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----------ceEEeEeeecCcEeEEEEcCCCC
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK----------NLELLYRMDTAGIFDIKWSPVGG 79 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~ 79 (331)
..+.+|..+|++ ..+|+|+.. .||.++||+.+.-.. +.......|.+.|+|+.|+|+
T Consensus 14 ~~IfSIdv~pdg---~~~aTgGq~--------~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-- 80 (942)
T KOG0973|consen 14 KSIFSIDVHPDG---VKFATGGQV--------LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-- 80 (942)
T ss_pred eeEEEEEecCCc---eeEecCCcc--------ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--
Confidence 346677777776 899999732 477888999754210 122334568899999999999
Q ss_pred CCCCeEEEEcCCccE-EEecCCC------------------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107 80 NAGPFLAQADADGGL-LRDITGE------------------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i-iw~~~~~------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 134 (331)
+++||+|++|..+ +|..... ..|...|..++|+|++.+|++++.|++|.+|+.
T Consensus 81 --G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 81 --GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred --CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 9999999999999 9988730 116888999999999999999999999999999
Q ss_pred cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEE
Q 020107 135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l 211 (331)
.+. ..+..+++|...|-.+.|.| -+++|++-+.|++|++|++........+... .+-....+.+.|+| +|.+|
T Consensus 159 ~tF--~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~l 234 (942)
T KOG0973|consen 159 KTF--ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHL 234 (942)
T ss_pred ccc--eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCee
Confidence 877 55889999999999999999 8899999999999999997765554444431 12345688999999 99999
Q ss_pred EEEec----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCC----CCC-----------eEEEEE-ecCcEEEEEEc
Q 020107 212 LTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF----IPG-----------LVLAAC-MHNGFAVVKVG 271 (331)
Q Consensus 212 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~-----------~~~~~~-~~~~~~~~~~~ 271 (331)
++... -.++.|.+-.+.+... .+.+|.+++.+++|+|. ... .++|.| .|..+.+|...
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~--~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDK--DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred cchhhccCCcceeEEEecCCceeee--eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 98642 3468888776653333 35899999999999982 001 144444 55666677664
Q ss_pred CcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 272 GEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 272 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
. .+++.... -....|.+++|+||| ..|..|| .||+|.+..++...+
T Consensus 313 ~--~RPl~vi~~lf~~SI~DmsWspdG---------~~LfacS-~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 313 L--PRPLFVIHNLFNKSIVDMSWSPDG---------FSLFACS-LDGTVALIHFEEKEL 359 (942)
T ss_pred C--CCchhhhhhhhcCceeeeeEcCCC---------CeEEEEe-cCCeEEEEEcchHHh
Confidence 4 34444433 235689999999999 6888999 999999999887643
No 91
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=7.7e-29 Score=199.61 Aligned_cols=271 Identities=15% Similarity=0.155 Sum_probs=220.5
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEee-ecCcEeEEEEcCCCCCCCCeEEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
-+..+..+... +.+.+|+ .|.|+|||+..... ++..+-.. ...-|+++...|+ ++.|++
T Consensus 421 vVcAvtIS~~t---rhVyTgG-----------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd----grtLiv 482 (705)
T KOG0639|consen 421 VVCAVTISNPT---RHVYTGG-----------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD----GRTLIV 482 (705)
T ss_pred EEEEEEecCCc---ceeEecC-----------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCC----CceEEe
Confidence 34455555554 7888887 99999999986532 23333221 2345999999999 999999
Q ss_pred EcCCccE-EEecCCCccc--------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 88 ADADGGL-LRDITGEKIS--------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
|++-.++ |||+.....+ .-.+++++.+||.+..++++.||.|.|||+..... ++.|++|...+.|+..+
T Consensus 483 GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~--VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASCIDIS 560 (705)
T ss_pred ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee--eecccCCCCCceeEEec
Confidence 9998888 9999876542 34577899999999999999999999999997644 89999999999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
+ ++..|-+|+-|.+||-||+|+++....... ...|.++.++| ++.++++|-+++.+.+....... ...+..
T Consensus 561 ~-dGtklWTGGlDntvRcWDlregrqlqqhdF----~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~---kyqlhl 631 (705)
T KOG0639|consen 561 K-DGTKLWTGGLDNTVRCWDLREGRQLQQHDF----SSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPE---KYQLHL 631 (705)
T ss_pred C-CCceeecCCCccceeehhhhhhhhhhhhhh----hhhheecccCC-CccceeeecccCcEEEEecCCcc---ceeecc
Confidence 7 889999999999999999999887666554 77899999999 99999999999999888776532 222478
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
|...|.++.|.+.| ..++++|.|+-+..|+..- +..++..+. .+.|.+++.+.++ ++|+||+ .|..
T Consensus 632 heScVLSlKFa~cG-kwfvStGkDnlLnawrtPy--GasiFqskE-~SsVlsCDIS~dd---------kyIVTGS-Gdkk 697 (705)
T KOG0639|consen 632 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY--GASIFQSKE-SSSVLSCDISFDD---------KYIVTGS-GDKK 697 (705)
T ss_pred cccEEEEEEecccC-ceeeecCchhhhhhccCcc--ccceeeccc-cCcceeeeeccCc---------eEEEecC-CCcc
Confidence 99999999999998 7888888988766776654 555665554 6789999999998 7999999 8988
Q ss_pred EEEEcC
Q 020107 319 LRIWMP 324 (331)
Q Consensus 319 i~iW~~ 324 (331)
-.+|.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888865
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-27 Score=181.59 Aligned_cols=237 Identities=20% Similarity=0.261 Sum_probs=193.4
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
.....|.+|.|+|. ...|++++.||.+ +++...... +..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 11 pP~d~IS~v~f~~~----~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 11 PPEDGISSVKFSPS----SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CChhceeeEEEcCc----CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 34577999999988 7788888899999 998877654 689999999986 567999999999999999987
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
.. ..+..|..++.++.+.+ ..+.+++|+-|++|++||.|.......+.. ...|.++.. .++.|++|+.|
T Consensus 86 ~~---~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----~kkVy~~~v---~g~~LvVg~~~ 154 (323)
T KOG1036|consen 86 NE---DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----GKKVYCMDV---SGNRLVVGTSD 154 (323)
T ss_pred cc---eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc----CceEEEEec---cCCEEEEeecC
Confidence 53 45667999999999998 778999999999999999998555545543 558999987 56899999999
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCc---------
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGS--------- 286 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~--------- 286 (331)
..+.+||+|+...+.........-.+.++++.|++.+ +++++-++++.+=.+... ..+....|+.|..
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9999999999887775545667788999999997644 556667787655444443 1345566777753
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+|.+++|+|-. +.||||| .||.|.+||+.+.
T Consensus 234 PVNai~Fhp~~---------~tfaTgG-sDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 234 PVNAIAFHPIH---------GTFATGG-SDGIVNIWDLFNR 264 (323)
T ss_pred EeceeEecccc---------ceEEecC-CCceEEEccCcch
Confidence 79999999997 6999999 9999999999765
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=189.57 Aligned_cols=266 Identities=17% Similarity=0.254 Sum_probs=195.7
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
..+.+.+.+..|+-.+.+ +-.+++++. ..|.|+||++...- ..+ ......+....+.|-
T Consensus 146 ~~i~h~g~~NRvr~~~~~---~~~~~asws--------e~G~V~Vw~l~~~l---~~l-~~~~~~~~~s~~~Pl------ 204 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLG---NEVLCASWS--------ENGRVQVWDLAPHL---NAL-SEPGLEVKDSEFRPL------ 204 (440)
T ss_pred cccccccccceeeecccC---Ccceeeeec--------ccCcEEEEEchhhh---hhh-cCccccccccccCce------
Confidence 344556677778777776 333333332 89999999987642 211 111111222111111
Q ss_pred eEEEEcCCccEEEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCC
Q 020107 84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 84 ~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 161 (331)
+ +...|...-+.++|+|-. ..|++|..-+.|++|...++.+.. ...+.+|...|..++|+|..
T Consensus 205 ------------~---t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 205 ------------F---TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred ------------E---EecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCcc
Confidence 1 112244556788899833 348888888899999999877632 23466799999999999988
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeeeeec
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETSVCL 239 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~ 239 (331)
...|++|+.||+|+|||+|.+.....+.. ++|.+.|+.|.|+. +..+||+|+.||+++|||+|+. .+|+.. +..|
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~H 346 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYH 346 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCccee-EEec
Confidence 89999999999999999999865544444 66999999999998 7679999999999999999974 355665 6899
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------------cceeEEeecCCcceeeeeecCCCCcccc
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----------------AEVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
..+|++|.|+|.....++++|.|+.+.+|++.-.. +++++...+ ...+-.+.|++..+
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiP---- 421 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIP---- 421 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCC----
Confidence 99999999999988999999999999999996432 223333333 44688899999998
Q ss_pred cccCcEEEEeecCCCe
Q 020107 303 KRKNSLVATCSFYDRL 318 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~ 318 (331)
.+|++.+ .||.
T Consensus 422 ----G~lvsTa-~dGf 432 (440)
T KOG0302|consen 422 ----GLLVSTA-IDGF 432 (440)
T ss_pred ----CeEEEec-ccce
Confidence 8999998 7875
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.6e-28 Score=195.59 Aligned_cols=251 Identities=14% Similarity=0.121 Sum_probs=200.3
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCC
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
..+++|+..|.++++.|. |..|++|+.|-.+ +||...... ....|.+++|++.+..|++.+...
T Consensus 161 i~l~hgtk~Vsal~~Dp~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EeccCCceEEEEeeecCC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 344667888999999999 9999999999999 999987532 366789999999999999999999
Q ss_pred eEEEEEccccce----------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeec--ccCC
Q 020107 128 SVSIVSVVESQL----------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQN--SKIH 194 (331)
Q Consensus 128 ~i~i~d~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~ 194 (331)
..+++|-....+ ..+..-++|...+++.+|+|.+...+++++.||++|+||+...+. .+++.. ..+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999765322 012223679999999999998889999999999999999987543 333433 1234
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCC-CCCceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI-SKPVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
.-+++.++|+| ++++||+|+.||.|.+||.++. ..+......+|.. .|++|.|++++ ++|++-|.|+.+++|+++
T Consensus 317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence 55789999999 9999999999999999998664 2344444568877 89999999998 888999999999999999
Q ss_pred CcccceeEEeecC--CcceeeeeecCCCCcccccccCcEEEEeec-----CCCeEEEEcCCC
Q 020107 272 GEKAEVLETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSF-----YDRLLRIWMPES 326 (331)
Q Consensus 272 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~ 326 (331)
.. .+++.+..+- .-+-+.++|||+. ++|++|.+ ..|.+.++|.-+
T Consensus 395 q~-kkpL~~~tgL~t~~~~tdc~FSPd~---------kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 395 QF-KKPLNVRTGLPTPFPGTDCCFSPDD---------KLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cc-ccchhhhcCCCccCCCCccccCCCc---------eEEEecccccCCCCCceEEEEeccc
Confidence 87 4555555542 2356789999998 79999864 346788888654
No 95
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=188.85 Aligned_cols=289 Identities=18% Similarity=0.284 Sum_probs=213.0
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
.+.+.+.+++|+|..+ ..++|+|. ..|.|-+||+..++. .-..++..|..+|.+|.|+|.+ ...
T Consensus 184 v~~~Rit~l~fHPt~~-~~lva~Gd----------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n---~s~ 249 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTEN-RKLVAVGD----------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN---TSQ 249 (498)
T ss_pred ecccceEEEEecccCc-ceEEEEcc----------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC---hhh
Confidence 4567899999999874 25888887 899999999963321 2334557789999999999997 569
Q ss_pred EEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 85 LAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+++.+.||++ +-|+++... ....+.++.|+.+...++.+..=|...+||++++.- ....+..|...|+.+
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSV 328 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-cchhhhhhhccccee
Confidence 9999999999 666655432 345567788888888888888888999999998653 244556788899999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceee--eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec---CCCC
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA--FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR---SISK 230 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~ 230 (331)
+++|..+.++++++.|++++|||+|.-..... +.. -.|...|.+..|+|.++ .|+|.+.|..|+|||.. ....
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCC-ceEeeccCCceEEeecccccccCC
Confidence 99999999999999999999999997554442 333 34999999999999445 49999999999999984 3234
Q ss_pred CceeeeeecCC------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceee-eeecCCCCcccc
Q 020107 231 PVNETSVCLGG------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYG-ADWQRGRSSLEG 302 (331)
Q Consensus 231 ~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~-~~~~~~~~~~~~ 302 (331)
+... ..|.. .....+|.|+. .+++++-....|-+++-.. ++.+..+..... .|.+ ..|+|-+
T Consensus 407 p~~~--I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~--~q~v~el~~P~~~tI~~vn~~HP~~----- 476 (498)
T KOG4328|consen 407 PLGT--IPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNG--GQMVCELHDPESSTIPSVNEFHPMR----- 476 (498)
T ss_pred ccce--eeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCC--CEEeeeccCccccccccceeecccc-----
Confidence 5555 44443 24567999974 5555554555544444333 455666544332 4544 4889987
Q ss_pred cccCcEEEEeecCCCeEEEEcCCC
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+++|+...|.|+||.-+.
T Consensus 477 ----~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 477 ----DTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ----cceeccCCccceEEEEecCC
Confidence 44666664889999997554
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.3e-28 Score=205.90 Aligned_cols=240 Identities=18% Similarity=0.240 Sum_probs=189.4
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC--------------------------------c
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA--------------------------------E 54 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~--------------------------------~ 54 (331)
.+.+.|.++.|++++ .|||+|+ +||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DG---KyLAsaG----------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG---KYLASAG----------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred ccCCcEEEEEeCCCC---ceeeecC----------CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 456778888888877 9999999 899999999866 0
Q ss_pred cc--------------------------ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----
Q 020107 55 EK--------------------------NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---- 103 (331)
Q Consensus 55 ~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---- 103 (331)
.. .....+.+|.+.|.++.||.++ +|++++.|.++ ||.+....+
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-----eeEeccccccEEeecCCCcceeeEE
Confidence 00 0112347899999999999874 99999999999 999998876
Q ss_pred -cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 104 -SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 104 -~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
|..-|+|++|+| |.+++++|+-||.|+||++...+. ..+..-..-|++++|.| +++..+.|+.+|.+++|+.+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V---v~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV---VDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee---EeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccC
Confidence 899999999999 778999999999999999987654 33333447899999999 799999999999999999987
Q ss_pred CCceeeeecc-----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec--CCceEEEEECCCCCC
Q 020107 182 SPFKLAFQNS-----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL--GGGVWRIKHHPFIPG 254 (331)
Q Consensus 182 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 254 (331)
.+....+... +.....|+.+.|.|.+...+++.+.|..|||||.+.. .++.. +.++ ...-....|+.++ .
T Consensus 483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~K-fKG~~n~~SQ~~Asfs~Dg-k 559 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHK-FKGFRNTSSQISASFSSDG-K 559 (712)
T ss_pred CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhh-hcccccCCcceeeeEccCC-C
Confidence 7654443330 1112379999999977777888899999999999763 33333 2332 2334567889987 7
Q ss_pred eEEEEEecCcEEEEEEc
Q 020107 255 LVLAACMHNGFAVVKVG 271 (331)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (331)
.+++++.|..+++|++.
T Consensus 560 ~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKND 576 (712)
T ss_pred EEEEeecCceEEEEeCC
Confidence 78888888899999973
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=191.41 Aligned_cols=244 Identities=15% Similarity=0.150 Sum_probs=193.4
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
..++.+|...|.+..++|+.++|++++ .+..+.+||+.++. .......++...+.+++|.|+ +..
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg----------~~e~~~lwDv~tgd-~~~~y~~~~~~S~~sc~W~pD----g~~ 326 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACG----------FDEVLSLWDVDTGD-LRHLYPSGLGFSVSSCAWCPD----GFR 326 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecC----------chHheeeccCCcch-hhhhcccCcCCCcceeEEccC----Cce
Confidence 346677666666555555557766665 47789999999987 444444455678999999999 999
Q ss_pred EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107 85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF 157 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 157 (331)
+++|+.|+.+ .|++..... ....|.+++..+||+++++.+.|..|++++.++... .... ....+|+++..
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~li-se~~~its~~i 403 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RGLI-SEEQPITSFSI 403 (519)
T ss_pred eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hccc-cccCceeEEEE
Confidence 9999999999 999987544 235589999999999999999999999999987432 2222 34568999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
+. +++++++--.+..+++||+...+.+..+.+ |... +..-+|--.+..++++|++|+.|+||+..++ +++..
T Consensus 404 S~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~G---hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~- 477 (519)
T KOG0293|consen 404 SK-DGKLALVNLQDQEIHLWDLEENKLVRKYFG---HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAV- 477 (519)
T ss_pred cC-CCcEEEEEcccCeeEEeecchhhHHHHhhc---ccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEe-
Confidence 96 889999988999999999997776666666 5433 3344555446789999999999999999985 66665
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+.+|...|++++|+|..+.++++++.|+++++|...+
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 6899999999999999988888888889888887764
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=200.28 Aligned_cols=272 Identities=15% Similarity=0.230 Sum_probs=216.6
Q ss_pred CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-E
Q 020107 21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK----NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-L 95 (331)
Q Consensus 21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-i 95 (331)
-|.+++|.+|+ +||.|++|+...... +.......|...|+++....+ ++.|++++.|-++ +
T Consensus 34 a~~~ryLfTgG----------RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~----~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 34 APNGRYLFTGG----------RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN----GKTLISASSDTTVKV 99 (735)
T ss_pred CCCCceEEecC----------CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC----CCceEEecCCceEEE
Confidence 34557899998 899999999876542 223334678999999999988 8899999999999 9
Q ss_pred EecCCCc--------ccCccEEEEEE-cCCCCeEEEEecCCeEEEEEccccce--------eeeeeee-cccceeEEEee
Q 020107 96 RDITGEK--------ISSSMCLCLEW-NPSATSITVGLSDGSVSIVSVVESQL--------EVLQQWK-AHEFELWATSF 157 (331)
Q Consensus 96 w~~~~~~--------~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~-~~~~~v~~~~~ 157 (331)
|+..... .|...|.|+++ .++...+|+|+-|+.|.+||++++.. .....+. ++...|++++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 9887653 48899999999 77888899999999999999997521 1122233 77889999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV 237 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 237 (331)
++ .+..+++|+..+.|++||.++.+.+..++. |...|..+..++ +|+.+++++.||+|++||+... +++.. +.
T Consensus 180 N~-t~t~ivsGgtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQ-rCl~T-~~ 252 (735)
T KOG0308|consen 180 NQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQ-RCLAT-YI 252 (735)
T ss_pred CC-cceEEEecCcccceEEeccccccceeeeec---cccceEEEEEcC-CCCeEeecCCCceEEeeecccc-ceeee-EE
Confidence 97 778999999999999999999987777776 999999999999 9999999999999999999984 66666 68
Q ss_pred ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
.|...|+++..+|+- ..+++++.++.+..-++++. .+....++ ...+|..+..+.... -+-.+. .|+
T Consensus 253 vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~-~~~tlick-~daPv~~l~~~~~~~---------~~WvtT-tds 319 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNP-AKSTLICK-EDAPVLKLHLHEHDN---------SVWVTT-TDS 319 (735)
T ss_pred eccCceEEEeeCCCc-ceEEecCCCCcEEecccCCc-hhheEeec-CCCchhhhhhccccC---------Cceeee-ccc
Confidence 899999999999987 67888888888777777774 22222222 345666777665442 234444 699
Q ss_pred eEEEEcCCC
Q 020107 318 LLRIWMPES 326 (331)
Q Consensus 318 ~i~iW~~~~ 326 (331)
.|+-|...-
T Consensus 320 ~I~rW~~~~ 328 (735)
T KOG0308|consen 320 SIKRWKLEP 328 (735)
T ss_pred cceecCCcc
Confidence 999997653
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=189.59 Aligned_cols=240 Identities=18% Similarity=0.201 Sum_probs=203.6
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------------------ccCccEEEEEEc
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------------------ISSSMCLCLEWN 114 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------------------~~~~~v~~~~~~ 114 (331)
.....|.-+|.+|+++|+ .++.++++.+|+| -|++.++. .|...+.+++.+
T Consensus 136 ~~~~~H~~s~~~vals~d----~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPD----DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeecc----ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 344679999999999999 8999999999999 55544322 356778999999
Q ss_pred CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH 194 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 194 (331)
+|+++|++|+.|..|.||+.++.+ +++.+.+|.+.|.+++|-. +.+.+++++.|+.+++|++.....+..+.. |
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyG---H 285 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYG---H 285 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhC---C
Confidence 999999999999999999999874 4888999999999999996 778899999999999999998777777776 9
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
++.|.+|.... .++.+-+|+.|+++++|++.... ..++.++.+.+-+++|-.+ ..+++++.++.|.+|.+...
T Consensus 286 qd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KK- 358 (479)
T KOG0299|consen 286 QDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKK- 358 (479)
T ss_pred ccceeeechhc-ccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeeccc-
Confidence 99999999887 78888888899999999996532 2234788999999999988 77889999999999999985
Q ss_pred cceeEEee-cC-----------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 275 AEVLETYA-KH-----------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 275 ~~~~~~~~-~h-----------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+++.+.+ .| ...|++++..|.. .++|+|+ .+|.|++|.++++
T Consensus 359 -kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---------dL~asGS-~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 -KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---------DLLASGS-WSGCVRLWKIEDG 412 (479)
T ss_pred -CceeEeeccccccCCccccccccceeeeEecccC---------ceEEecC-CCCceEEEEecCC
Confidence 4444433 12 2278999999998 6999999 9999999999988
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.3e-27 Score=195.18 Aligned_cols=277 Identities=16% Similarity=0.204 Sum_probs=219.4
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeE-EEEcCCCCCCC
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFD-IKWSPVGGNAG 82 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~ 82 (331)
.++.+++|-..|+-+...+. ..+++++ +||++++|+-...+..-...+.+|.+-|.. +++-+.. +
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~s----------Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~---~ 71 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGS----------RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESD---K 71 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecC----------CCCceeeeeccCcccccceecccCcceeeccceecccc---C
Confidence 34577888877766544321 4677777 899999999877653333455667777766 8888642 4
Q ss_pred CeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 83 PFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 83 ~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
..|++|+.|..+ +|...+... |+..|.+++...++. +++|+.|.++++|-..+ +...+++|+..|+++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAV 146 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hhcccCCcchheeee
Confidence 579999999999 998877654 899999999877776 99999999999999863 355689999999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
+.-| + +.+++|+.|.+|++|.- ++..+.+.. |.+.|+.+++-+ ...|++++.||.|++|++.. +. +.+
T Consensus 147 ~~l~-e-~~~vTgsaDKtIklWk~--~~~l~tf~g---HtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~g-e~-l~~- 214 (745)
T KOG0301|consen 147 ASLP-E-NTYVTGSADKTIKLWKG--GTLLKTFSG---HTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDG-EV-LLE- 214 (745)
T ss_pred eecC-C-CcEEeccCcceeeeccC--Cchhhhhcc---chhheeeeEEec--CCCeEeecCCceEEEEeccC-ce-eee-
Confidence 9987 4 38999999999999986 455777776 999999999997 45689999999999999953 34 433
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
..+|..-|+++...+++ +.++++|.|+.+++|+.. ++.+.+.-....|+++.+-+++ -|++|+ .
T Consensus 215 ~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~Ng----------DIvvg~-S 278 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNG----------DIVVGG-S 278 (745)
T ss_pred eeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCC----------CEEEec-c
Confidence 48999999999955554 788888888888888765 5666776666699999999998 467777 7
Q ss_pred CCeEEEEcCCCc
Q 020107 316 DRLLRIWMPESD 327 (331)
Q Consensus 316 d~~i~iW~~~~~ 327 (331)
||.||||..+..
T Consensus 279 DG~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DGRVRVFTVDKD 290 (745)
T ss_pred CceEEEEEeccc
Confidence 999999988744
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-27 Score=185.63 Aligned_cols=279 Identities=14% Similarity=0.220 Sum_probs=216.8
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FL 85 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l 85 (331)
...+.+.+|.|+|.. .+|.+++ -||.++||.++....+..........+|.+.+|.|+ |. .+
T Consensus 211 ps~~~I~sv~FHp~~---plllvaG----------~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~----G~~~i 273 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTA---PLLLVAG----------LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN----GHSVI 273 (514)
T ss_pred cCcCCceEEEecCCC---ceEEEec----------CCCcEEEEEecCccChhheeeeeccCccceeeecCC----CceEE
Confidence 346789999999998 4666666 599999999998764533333444678999999999 66 77
Q ss_pred EEEcCCccE-EEecCCCccc---------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 86 AQADADGGL-LRDITGEKIS---------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
++++....+ .||+.+.+.. ...+.....++++++|+..+..|.|.+....++.+ +..++ -.+.|..+
T Consensus 274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFK-IEGVVSDF 350 (514)
T ss_pred EecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheee-eccEEeeE
Confidence 887777766 9999886652 34566778899999999999999999999988865 66666 46689999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--EEEEEecCCCCEEEEEecCCeEEEEEecCC-----
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV--CCIASIPSDSNTLLTGSYDEYLRVWDVRSI----- 228 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----- 228 (331)
+|+. ++..|++++.+|.|.+||+++..++..+.. .+.| ++++.++ ++.+||+|+..|.|.|||..+.
T Consensus 351 ~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D----~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVD----DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec-CCcEEEEEcCCceEEEEecCCcceEEEEee----cCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCC
Confidence 9996 778888888899999999999988888886 3333 5666678 8999999999999999997542
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCccccc
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGK 303 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~ 303 (331)
.+|+.. +......|++++|+|+. .+++.++ ..+.++++.+... .....+. ..-+.|++++|+|.+
T Consensus 425 PkPik~-~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~--TVFsNfP~~n~~vg~vtc~aFSP~s------ 494 (514)
T KOG2055|consen 425 PKPIKT-VDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSC--TVFSNFPTSNTKVGHVTCMAFSPNS------ 494 (514)
T ss_pred CCchhh-hhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccce--eeeccCCCCCCcccceEEEEecCCC------
Confidence 345554 45567789999999995 4433332 4567788887663 3333333 234579999999988
Q ss_pred ccCcEEEEeecCCCeEEEEcCC
Q 020107 304 RKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 304 ~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
.+||.|. .+|.|.+|.+.
T Consensus 495 ---G~lAvGN-e~grv~l~kL~ 512 (514)
T KOG2055|consen 495 ---GYLAVGN-EAGRVHLFKLH 512 (514)
T ss_pred ---ceEEeec-CCCceeeEeec
Confidence 6999999 99999999874
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.1e-26 Score=183.52 Aligned_cols=279 Identities=16% Similarity=0.248 Sum_probs=220.7
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----------------eEEeEeeecCcEeEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----------------LELLYRMDTAGIFDI 72 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----------------~~~~~~~~~~~v~~~ 72 (331)
.-++.+|..+|.. .++.+++ .+|+|.=|++.++... ++.-.+.|...+.++
T Consensus 142 ~~s~~~vals~d~---~~~fsas----------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 142 QLSVTSVALSPDD---KRVFSAS----------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred cCcceEEEeeccc---cceeecC----------CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 3466777777776 7888888 8999999998765421 111113688889999
Q ss_pred EEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee
Q 020107 73 KWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW 145 (331)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 145 (331)
+.+|+ +++|++|+.|..+ ||+..+.+. |...|.+++|-.....+++++.|++|++|+++.... +.++
T Consensus 209 avS~D----gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--vetl 282 (479)
T KOG0299|consen 209 AVSSD----GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--VETL 282 (479)
T ss_pred EEcCC----CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--HHHH
Confidence 99999 9999999999999 999987643 788999999998888899999999999999987644 7888
Q ss_pred ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107 146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~ 225 (331)
.+|+..|.++.... .+..+-+|+.|+++++|++.... ..++.. |.+.+-|++|- +...|++|+.+|.|.+|++
T Consensus 283 yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees-qlifrg---~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 283 YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES-QLIFRG---GEGSIDCVAFI--NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred hCCccceeeechhc-ccceEEeccccceeEEEeccccc-eeeeeC---CCCCeeeEEEe--cccceeeccCCceEEEeee
Confidence 99999999998774 56677777799999999995433 444554 88899999998 5778999999999999999
Q ss_pred cCCCCCceeeeeecC-----------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEeecCCcceeeee
Q 020107 226 RSISKPVNETSVCLG-----------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~ 292 (331)
.+ ++|+.....+|. ..|++++..|.. .++++++.++.+++|.+.+. ..+++..+. -.+-|++++
T Consensus 356 ~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~ 432 (479)
T KOG0299|consen 356 LK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA 432 (479)
T ss_pred cc-cCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence 98 477766444442 278999999985 66666677888999999775 234555555 578899999
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
|++++. .+++..| ....+--|-..
T Consensus 433 f~~sgk--------~ivagiG-kEhRlGRW~~~ 456 (479)
T KOG0299|consen 433 FSNSGK--------RIVAGIG-KEHRLGRWWCL 456 (479)
T ss_pred EccCCC--------EEEEecc-cccccceeeEe
Confidence 999995 5777777 77776666543
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=181.94 Aligned_cols=248 Identities=15% Similarity=0.188 Sum_probs=197.4
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---------------c---------ccCccEEEEEEc
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---------------K---------ISSSMCLCLEWN 114 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---------------~---------~~~~~v~~~~~~ 114 (331)
.....|..++.+.+|+|+ |.++|+|+.|..| |.+++.. . -|..+|+++.|+
T Consensus 106 ~ylt~HK~~cR~aafs~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 345779999999999999 9999999999999 7776520 0 056789999999
Q ss_pred CCCCeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 193 (331)
|....|++|+.|++|++||......+. .+.++ ...+|.++.|+| .+.+++.|.+-..+++||+.+.++...-.....
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 999999999999999999998643221 22333 456899999999 899999999999999999999887544433456
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
|.+.|+++.+++ .+++.++++.||.|++||--+. +++..+...|.+ .|.+..|..++ .+++++|.|..+++|.+..
T Consensus 260 ht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 260 HTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecC
Confidence 999999999999 9999999999999999998874 677765667765 68999999998 7889999999999999987
Q ss_pred cccceeEEeecC-----CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 273 EKAEVLETYAKH-----GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 273 ~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++.+.++.|- ...-+...|+... .+++.-....+.+.-||..+.
T Consensus 337 --~R~l~~YtGAg~tgrq~~rtqAvFNhtE---------dyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 337 --GRMLKEYTGAGTTGRQKHRTQAVFNHTE---------DYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred --CceEEEEecCCcccchhhhhhhhhcCcc---------ceEEccccccCceeeccccch
Confidence 5777777643 1223445566655 466665535577888887664
No 104
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=192.56 Aligned_cols=240 Identities=20% Similarity=0.266 Sum_probs=200.3
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
....|.+.+..+.|-++ ...|++|+.|..| +|+....+. ..+.|+++.|.++++.+++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEccC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 34668899999999999 8899999999999 999987763 2567999999999999999999999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
|++...+. ..++.+|...|+++.|.. ....+++|+.|.+|++||+....+...+.. ...+..|..+ ...+
T Consensus 246 Wnvd~~r~--~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~---~~~~ 315 (459)
T KOG0288|consen 246 WNVDSLRL--RHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCS---ISDV 315 (459)
T ss_pred eeccchhh--hhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc----cccccceEec---ceee
Confidence 99998765 788999999999999986 555599999999999999998877666553 4556666664 4678
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--C--Ccc
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--H--GSL 287 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h--~~~ 287 (331)
++|..|++|++||++.. .+... .+..+.|+++..++++ ..+++++-++.+.+++++.. +....+.. . ...
T Consensus 316 ~SgH~DkkvRfwD~Rs~-~~~~s--v~~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~--eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSA-DKTRS--VPLGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTK--EIRQTFSAEGFKCASD 389 (459)
T ss_pred eecccccceEEEeccCC-ceeeE--eecCcceeeEeeccCC-eEEeeecCCCceeeeecccc--cEEEEeeccccccccc
Confidence 99999999999999985 55555 6677799999999998 66778889999999999885 44444432 1 224
Q ss_pred eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
.+.+.|||++ .|+++|| .||.|+||++.++.+.
T Consensus 390 wtrvvfSpd~---------~YvaAGS-~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 390 WTRVVFSPDG---------SYVAAGS-ADGSVYIWSVFTGKLE 422 (459)
T ss_pred cceeEECCCC---------ceeeecc-CCCcEEEEEccCceEE
Confidence 8899999999 7999999 9999999999988653
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=6.1e-27 Score=176.82 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=219.1
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--c-------e----EEeEeeecCcEeEEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--N-------L----ELLYRMDTAGIFDIK 73 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~-------~----~~~~~~~~~~v~~~~ 73 (331)
.+.|.+.++..-+... +|+++|+ .||.|.+||++.... . . +.-..+|...|.++.
T Consensus 41 ~HgGsvNsL~id~teg--rymlSGg----------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~ 108 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEG--RYMLSGG----------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI 108 (397)
T ss_pred cCCCccceeeeccccc--eEEeecC----------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE
Confidence 3456777777766543 8999998 899999999986441 0 1 111234667899999
Q ss_pred EcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCC---CeEEEEecCCeEEEEEccccceeeeee
Q 020107 74 WSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSA---TSITVGLSDGSVSIVSVVESQLEVLQQ 144 (331)
Q Consensus 74 ~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 144 (331)
|-|-+ .-++.+++.|..+ +||..+.+. -++.|++-+++|-. -++|+|..+-.|++.|+..+.. ...
T Consensus 109 WyP~D---tGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~ 183 (397)
T KOG4283|consen 109 WYPID---TGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHT 183 (397)
T ss_pred Eeeec---CceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eee
Confidence 99975 4589999999999 999998775 26778888888843 3688888899999999999965 788
Q ss_pred eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cc-----------eeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 145 WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PF-----------KLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
+.+|...|.++.|+|...-.|++|+.||.|++||+|.. .+ .+.++...+|.+.|..++|.. ++.+++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~ 262 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLA 262 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhh
Confidence 99999999999999977778999999999999999864 11 223333356889999999999 999999
Q ss_pred EEecCCeEEEEEecCCCCCceeee-eecCC---ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107 213 TGSYDEYLRVWDVRSISKPVNETS-VCLGG---GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
+++.|..+++|+..+++..+...- ..|.. .-..+. +.+. +.++..-.++++.++.+.. +..+..+..|-..|
T Consensus 263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s-~vfv~~p~~~~lall~~~s--gs~ir~l~~h~k~i 338 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS-DVFVLFPNDGSLALLNLLE--GSFVRRLSTHLKRI 338 (397)
T ss_pred hccCccceEEeecccCcccccccccccccccccceEEEe-eccc-ceEEEEecCCeEEEEEccC--ceEEEeeeccccee
Confidence 999999999999988754333211 11111 111133 2222 3444444557777777766 68889999998899
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.+..+-|+- +...++. .|+.|..|-+
T Consensus 339 ~c~~~~~~f---------q~~~tg~-~d~ni~~w~p 364 (397)
T KOG4283|consen 339 NCAAYRPDF---------EQCFTGD-MNGNIYMWSP 364 (397)
T ss_pred eEEeecCch---------hhhhccc-cCCccccccc
Confidence 999999998 6889999 9999999987
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.2e-25 Score=167.54 Aligned_cols=279 Identities=11% Similarity=0.155 Sum_probs=212.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+++.++.|++.+ ++|++++ .|..++|||...+. ..+.+ ..+..+|..++|... ...++.
T Consensus 13 ~~~~i~sl~fs~~G---~~litss----------~dDsl~LYd~~~g~-~~~ti-~skkyG~~~~~Fth~----~~~~i~ 73 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG---LLLITSS----------EDDSLRLYDSLSGK-QVKTI-NSKKYGVDLACFTHH----SNTVIH 73 (311)
T ss_pred CCCceeEEEecCCC---CEEEEec----------CCCeEEEEEcCCCc-eeeEe-ecccccccEEEEecC----CceEEE
Confidence 45789999999888 7888877 68899999999886 45444 456667888999877 455555
Q ss_pred EcC--CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 88 ADA--DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 88 ~~~--dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
++. |.+| .-++.+.+. |...|.+++.+|-++.+++++.|++|++||++..+.+-+..+. .-..++|.
T Consensus 74 sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~AfD 149 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAFD 149 (311)
T ss_pred ccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeEC
Confidence 555 6666 555555443 8999999999999999999999999999999976553333332 23367899
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
| .+-++|++.....|++||+|.-. ....+....+-....+.|.|+| +|++|+.+...+.+++.|.-.+. .... +
T Consensus 150 p-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~-~~~t-f 225 (311)
T KOG1446|consen 150 P-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGT-VKST-F 225 (311)
T ss_pred C-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCc-Eeee-E
Confidence 8 88888888888899999999753 2334444223567899999999 99999999999999999998864 2322 2
Q ss_pred eecCCc---eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107 237 VCLGGG---VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATC 312 (331)
Q Consensus 237 ~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 312 (331)
..+... .-..+|.|++ ..++++..++.+.+|++.. +..+..+++ +.+++.++.|+|.. -+++|
T Consensus 226 s~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~t--g~~v~~~~~~~~~~~~~~~fnP~~---------~mf~s- 292 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLET--GKKVAVLRGPNGGPVSCVRFNPRY---------AMFVS- 292 (311)
T ss_pred eeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCC--CcEeeEecCCCCCCccccccCCce---------eeeee-
Confidence 333222 2578899997 7777777789999999955 688888887 78999999999986 35554
Q ss_pred ecCCCeEEEEcCCCcc
Q 020107 313 SFYDRLLRIWMPESDC 328 (331)
Q Consensus 313 ~~~d~~i~iW~~~~~~ 328 (331)
.+..+-+|=+....
T Consensus 293 --a~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 293 --ASSNLVFWLPDEDA 306 (311)
T ss_pred --cCceEEEEeccccc
Confidence 46789999876543
No 107
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.2e-26 Score=174.70 Aligned_cols=281 Identities=19% Similarity=0.187 Sum_probs=198.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l 85 (331)
|.+|-..|....++.+|.+||+.+ .|+.|++|++...........+. ..+--+.+.|.|+ -+-+
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~----------~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD----c~s~ 147 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATIS----------GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD----CKSV 147 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEe----------CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC----cceE
Confidence 444444444444444459999998 89999999998754221111111 1234678999999 5555
Q ss_pred EEEcCCcc-E-EEecCC------------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee
Q 020107 86 AQADADGG-L-LRDITG------------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW 145 (331)
Q Consensus 86 ~~~~~dg~-i-iw~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 145 (331)
+.....|. + ++.+.. .+.|...+..+-....+.+|++++.|..|.+|+++ ++. +..+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~--L~~i 224 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL--LQSI 224 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce--eeee
Confidence 54444443 3 443322 22245666777777788999999999999999998 544 6667
Q ss_pred ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107 146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
......-+..+.+| ++.++++++..-.|++|.+--.+ ....++. ++|+..|..++|+| +...+++.+.||+
T Consensus 225 dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn-~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSN-SSTRAVTVSKDGK 301 (420)
T ss_pred ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCC-CcceeEEEecCCc
Confidence 66666778889999 89999999999999999874322 2334444 66999999999999 9999999999999
Q ss_pred EEEEEecCC----C--CCcee---eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCccee
Q 020107 220 LRVWDVRSI----S--KPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAY 289 (331)
Q Consensus 220 i~iwd~~~~----~--~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 289 (331)
+++||+.-. + +.+.+ .+..-.+....++++|.+ ..++.+....++++.-.+ ++...++. .|...|.
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~--g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASED--GKDYPELEDIHSTTIS 377 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEccc--CccchhHHHhhcCcee
Confidence 999998632 1 11111 012234445599999995 455555556666666555 45555554 5899999
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
+++|++++ ++++||| |+.+++..
T Consensus 378 ~is~~~~g---------~~~atcG--dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDG---------KYIATCG--DRYVRVIR 400 (420)
T ss_pred eEEecCCC---------cEEeeec--ceeeeeec
Confidence 99999999 7999999 99999876
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-26 Score=192.74 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=212.4
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCC---CC----CCCeEEEEcCCccE-E
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVG---GN----AGPFLAQADADGGL-L 95 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~----~~~~l~~~~~dg~i-i 95 (331)
+.|.+-. .|..++|||+....+. .....-.|...|+++.--|-+ ++ -...+.+++.|++| +
T Consensus 337 ~klscVY----------ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 337 DKLSCVY----------NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred ceEEEEE----------cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 6776664 5999999999876532 112234588889998877721 00 03368999999999 9
Q ss_pred EecCCCcc-------------------------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 96 RDITGEKI-------------------------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 96 w~~~~~~~-------------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
|++..... ....+.+++.+|++++||+|..-|.+++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99875110 13457899999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCC--CCcEEEEEcCCCeEEEEEccCCC-ceeeeecccCCCc-------------
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVH--QPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKIHKM------------- 196 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~------------- 196 (331)
++..-+. ...+..|+..|.|+.|+.. ..++|++++.|..|++||....- ..+.+.. |..
T Consensus 487 ~Lq~l~~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 487 DLQELEY--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---HSSSITSVKFACNGLN 561 (1080)
T ss_pred Eehhhhh--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---cccceeEEEEeecCCc
Confidence 9986543 6677899999999999842 35789999999999999986421 1111111 333
Q ss_pred ------------------------------------ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeec
Q 020107 197 ------------------------------------GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCL 239 (331)
Q Consensus 197 ------------------------------------~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~ 239 (331)
.++.|+..| +..++++++.|..|+|||+.++++.... -...|
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccC
Confidence 355666667 7779999999999999999997543221 12356
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
.+..-.+...|.+ -++++++++..+.+++... ++++.++.||...|+++.|.+|- +.|++++ .||.|
T Consensus 641 eG~lIKv~lDPSg-iY~atScsdktl~~~Df~s--gEcvA~m~GHsE~VTG~kF~nDC---------kHlISvs-gDgCI 707 (1080)
T KOG1408|consen 641 EGDLIKVILDPSG-IYLATSCSDKTLCFVDFVS--GECVAQMTGHSEAVTGVKFLNDC---------KHLISVS-GDGCI 707 (1080)
T ss_pred CCceEEEEECCCc-cEEEEeecCCceEEEEecc--chhhhhhcCcchheeeeeecccc---------hhheeec-CCceE
Confidence 7788899999997 7888889999999999988 79999999999999999999999 6899999 89999
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
.||.+...
T Consensus 708 FvW~lp~~ 715 (1080)
T KOG1408|consen 708 FVWKLPLT 715 (1080)
T ss_pred EEEECchh
Confidence 99998653
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=191.85 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=212.4
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-----eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-----LELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
++....|++......+||.+. ++|.|.++|.....-. + .....|..+|.++.|-|. ...|
T Consensus 51 pPf~~sFs~~~n~eHiLavad----------E~G~i~l~dt~~~~fr~ee~~l-k~~~aH~nAifDl~wapg----e~~l 115 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVAD----------EDGGIILFDTKSIVFRLEERQL-KKPLAHKNAIFDLKWAPG----ESLL 115 (720)
T ss_pred CCccccccCCCCccceEEEec----------CCCceeeecchhhhcchhhhhh-cccccccceeEeeccCCC----ceeE
Confidence 345678888777778999997 8999999998765321 2 234569999999999997 8899
Q ss_pred EEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccce----------------
Q 020107 86 AQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQL---------------- 139 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~---------------- 139 (331)
++++.|.++ .|++.+..+ |...+.+++|.|..+. |++|+.||.|.|||++....
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 999999999 999988665 6778899999997764 88899999999999875320
Q ss_pred --ee-------eeeeeccccee----EEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeeeec-----ccCC---Ccc
Q 020107 140 --EV-------LQQWKAHEFEL----WATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAFQN-----SKIH---KMG 197 (331)
Q Consensus 140 --~~-------~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----~~~~---~~~ 197 (331)
.+ +...+.+...| +.+.| .+...|++++. |+.|++||+++......... .+-| ...
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 00 11122333334 44554 37788888887 99999999997654322211 1113 345
Q ss_pred eEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-CceeeeeecC-Cc-eEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107 198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLG-GG-VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
+.++.... .|.+|.+.+.|+.|.+|+++.... |+.. +.++. .. -..-..+|++ ..+++++.+....+|.+...
T Consensus 274 ~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~-~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~- 349 (720)
T KOG0321|consen 274 QVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAE-FSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP- 349 (720)
T ss_pred eEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhh-ccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc-
Confidence 77787777 778888888899999999987543 2222 12221 11 1223457886 67778888888999999886
Q ss_pred cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
......+.+|.-.|+.++|.|..- .-+++|+ +|-.+++|++.+++.
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~--------t~v~TcS-dD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSAT--------TPVATCS-DDFRVKIWRLSNGLE 395 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccC--------CCceeec-cCcceEEEeccCchh
Confidence 556667889999999999999865 6789998 999999999987754
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=184.94 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=201.9
Q ss_pred CCCcEEEEeccCcccceEEeEeee-cCcEeEE-EEcCCCCCCCCeEEEEcCCccE--EEecCCCcc------cCccEEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMD-TAGIFDI-KWSPVGGNAGPFLAQADADGGL--LRDITGEKI------SSSMCLCL 111 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~------~~~~v~~~ 111 (331)
....+.+||+.++...+ .+ ++. ...-.++ ... ..+++++...... +|.+..... .++++.++
T Consensus 16 d~~~~~~~dl~TGt~~~-~y-kg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLL-QY-KGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred CCcceeEEecCCCceeE-Ee-cCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 45669999999986322 22 222 1111111 122 3377777766655 888876433 36889999
Q ss_pred EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC---------C
Q 020107 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE---------S 182 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~ 182 (331)
+-+|.|.+|+.|+..|.|++|.+.+|.+ +..+.+|-..|+++.|+- ++.+|++|+.||.|.+|++.. .
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 9999999999999999999999999976 777789999999999995 899999999999999998742 2
Q ss_pred CceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
+....|. .|.-+|+.+...+- ...+++|.+.|.++++||+..+ ..+.. ......+.+++..|.+ ..+.+++.
T Consensus 165 ~p~~~f~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlt--i~fp~si~av~lDpae-~~~yiGt~ 237 (476)
T KOG0646|consen 165 KPLHIFS---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLT--ITFPSSIKAVALDPAE-RVVYIGTE 237 (476)
T ss_pred cceeeec---cCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEE--EecCCcceeEEEcccc-cEEEecCC
Confidence 2233444 49999999998762 3468999999999999999986 55555 6778899999999986 77778888
Q ss_pred cCcEEEEEEcCcc--------------cceeEEeecCCc--ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 262 HNGFAVVKVGGEK--------------AEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 262 ~~~~~~~~~~~~~--------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
++.+.+..+.... +..+..+.||.+ .|++++.+-|+ .+|++|+ .||.|+|||+.
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg---------tlLlSGd-~dg~VcvWdi~ 307 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG---------TLLLSGD-EDGKVCVWDIY 307 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc---------cEEEeeC-CCCCEEEEecc
Confidence 8887666664432 345666778988 99999999999 7999999 99999999997
Q ss_pred Cccc
Q 020107 326 SDCL 329 (331)
Q Consensus 326 ~~~~ 329 (331)
+...
T Consensus 308 S~Q~ 311 (476)
T KOG0646|consen 308 SKQC 311 (476)
T ss_pred hHHH
Confidence 7543
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=8e-27 Score=200.27 Aligned_cols=231 Identities=18% Similarity=0.281 Sum_probs=201.9
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 136 (331)
+...+.+..|..+ ++++++.+.++ +|+..+.. .|.+.|.++++..-+..+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred CcchhhhheeecC------eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 4567888999866 89999999999 99987654 3789999999988788999999999999999998
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
++. ...+.+|...+.++...+ ..+++|+.|.+|++|++.++..+..+.. |..+|+++..+ +.++++|+.
T Consensus 281 g~C--~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V~~v~~~---~~~lvsgs~ 349 (537)
T KOG0274|consen 281 GEC--THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPVNCVQLD---EPLLVSGSY 349 (537)
T ss_pred CcE--EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc---ccccEEEEEec---CCEEEEEec
Confidence 854 888999999999999754 7888999999999999999998888877 99999999995 789999999
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
|++|++||+.++ +++.. +.+|.+.|+++.+.+. ..++.++.|..+++|++.... +++.++.+|.+.+.++.+..
T Consensus 350 d~~v~VW~~~~~-~cl~s-l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~- 423 (537)
T KOG0274|consen 350 DGTVKVWDPRTG-KCLKS-LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRD- 423 (537)
T ss_pred CceEEEEEhhhc-eeeee-ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCCccccccccccc-
Confidence 999999999975 66666 6789999999999886 678888899889999998842 89999999999887766554
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++|++++ .|++|++||.+++..
T Consensus 424 ----------~~Lvs~~-aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 424 ----------NFLVSSS-ADGTIKLWDAEEGEC 445 (537)
T ss_pred ----------ceeEecc-ccccEEEeecccCce
Confidence 4899999 999999999988754
No 112
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=174.46 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=179.0
Q ss_pred ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 103 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
.|...+.+++|+.+|..|++|+.|+++.+|+++..+........+|...|-.++|+|..+.++++++.|..|++||++.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 35678899999999999999999999999999887654455667899999999999988999999999999999999999
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
++...+.. ...=.-+.|+| ++.+++.++.|..|.+.|.++. +++.. ......+..++|+.++ .+++.+.+.
T Consensus 98 k~~~~i~~----~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~-~~~~~--~~~~~e~ne~~w~~~n-d~Fflt~Gl 168 (313)
T KOG1407|consen 98 KCTARIET----KGENINITWSP-DGEYIAVGNKDDRITFIDARTY-KIVNE--EQFKFEVNEISWNNSN-DLFFLTNGL 168 (313)
T ss_pred cEEEEeec----cCcceEEEEcC-CCCEEEEecCcccEEEEEeccc-ceeeh--hcccceeeeeeecCCC-CEEEEecCC
Confidence 98888776 44445688999 9999999999999999999984 55555 6677788999999665 777777777
Q ss_pred CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+.+.|..... -+++.+++.|.....++.|+|+| +++|+|+ .|..+.+||++....
T Consensus 169 G~v~ILsyps--Lkpv~si~AH~snCicI~f~p~G---------ryfA~Gs-ADAlvSLWD~~ELiC 223 (313)
T KOG1407|consen 169 GCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDG---------RYFATGS-ADALVSLWDVDELIC 223 (313)
T ss_pred ceEEEEeccc--cccccccccCCcceEEEEECCCC---------ceEeecc-ccceeeccChhHhhh
Confidence 8888888775 58899999999999999999999 8999999 999999999987544
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=200.62 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=191.8
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK-------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIV 132 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 132 (331)
....+|..+++ ...++.++..-.-++.+.... -....+..+.|.. +.++||+++..|.|.+|
T Consensus 40 ~~~nAIs~nr~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 40 AKANAISVNRD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccceEeecCC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 34566667777 555666554322133332211 1123455677874 45789999999999999
Q ss_pred Ecccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 133 SVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 133 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
|+... +.+.+..|..|+..++++.|++..+++|++|+.||+|++||+|..+....+.. ....|+.|.|+|..++.|
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKF 192 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceE
Confidence 99861 22345678899999999999998999999999999999999999888777776 788999999999889999
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA 291 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 291 (331)
+++.+.|.+++||+|...++... +.+|.++|.++.|+|++ ..++++|.|+.+++|++.......+.++.. ..+|..+
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k-~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rV 269 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKK-LTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRV 269 (839)
T ss_pred EEecCCceEEEeeccCchhHHHH-hhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccceeEEee-cceeeee
Confidence 99999999999999998777666 68999999999999975 777788888889999998765556655543 5689999
Q ss_pred eecCCCCcccccccCcEEEEeec-CCCeEEEEcCCCc
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSF-YDRLLRIWMPESD 327 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~-~d~~i~iW~~~~~ 327 (331)
.|-|..+ ..||+++- .|-.|+|||+.-.
T Consensus 270 kWRP~~~--------~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 270 KWRPARS--------YHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eeccCcc--------chhhhhhccccceEEEEeeccc
Confidence 9999986 78888763 5789999998654
No 114
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.6e-28 Score=211.51 Aligned_cols=302 Identities=21% Similarity=0.341 Sum_probs=232.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEe-eecCcEeEEEEcCCCCCCCCeEEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYR-MDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
....++|+|.++ .++|+|+.......+.+.+.++-||.++..... ++.... .-....+.++|.+.+....-+||.
T Consensus 8 Rta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 8 RTATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ccceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeec
Confidence 345789999985 789988744333333446778888877654321 222211 123568999999983210124999
Q ss_pred EcCCccE-EEecCCC------------cccCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107 88 ADADGGL-LRDITGE------------KISSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~------------~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
|..||.| +|+.... +.|.+.|..+.|++... .||+|+.||.|.|||+...+......-......|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999 9987652 33799999999999665 89999999999999998743211111122456899
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCC
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISK 230 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~ 230 (331)
+++|+....+.|++++.+|.+.|||+|..+.+..+.... ....+..+.|+|.....+++++.|. .|.+||+|....
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 999998778899999999999999999887665555511 2245889999997777888887664 699999999888
Q ss_pred CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107 231 PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVA 310 (331)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 310 (331)
|+.. +..|...|.++.|++.++.++++++.|+.+.+|+... ++.+..+......+..+.|+|..+ ..|+
T Consensus 245 P~k~-~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~~~nW~fdv~w~pr~P--------~~~A 313 (1049)
T KOG0307|consen 245 PLKI-LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPAQGNWCFDVQWCPRNP--------SVMA 313 (1049)
T ss_pred chhh-hcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCCCCcceeeeeecCCCc--------chhh
Confidence 8887 4799999999999999888999999999988888776 789999988888999999999998 7888
Q ss_pred EeecCCCeEEEEcCCCc
Q 020107 311 TCSFYDRLLRIWMPESD 327 (331)
Q Consensus 311 s~~~~d~~i~iW~~~~~ 327 (331)
.++ -||.|.|+.+...
T Consensus 314 ~as-fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 314 AAS-FDGKISIYSLQGT 329 (1049)
T ss_pred hhe-eccceeeeeeecC
Confidence 888 8999999998654
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.8e-25 Score=169.77 Aligned_cols=265 Identities=17% Similarity=0.237 Sum_probs=204.1
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+..+..|.|+|.+ +.|++++ -||.+++|++...+ ++..+ .|..++.+++|.++ ..+++|
T Consensus 13 ~d~IS~v~f~~~~---~~LLvss----------WDgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d~-----~~~~~G 71 (323)
T KOG1036|consen 13 EDGISSVKFSPSS---SDLLVSS----------WDGSLRLYDVPANS--LKLKF-KHGAPLLDCAFADE-----STIVTG 71 (323)
T ss_pred hhceeeEEEcCcC---CcEEEEe----------ccCcEEEEeccchh--hhhhe-ecCCceeeeeccCC-----ceEEEe
Confidence 3457888898766 6666666 49999999999885 43332 48899999999986 379999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+-||.+ ..|+.+.+. |..++.|+.+++-...+++|+.|++|++||.+... ....+. ....|.++... +
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d-~~kkVy~~~v~---g 145 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFD-QGKKVYCMDVS---G 145 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--cccccc-cCceEEEEecc---C
Confidence 999999 999987654 78999999999988999999999999999998642 234443 34478888864 4
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC--CCceeeeeecC
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS--KPVNETSVCLG 240 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~ 240 (331)
+.|+.|+.+..+.+||+|+......... ..-+..++||++.| ++.=++.++-||.|.+=.+.... +.....+..|.
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~re-S~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRRE-SSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhcc-ccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 7899999999999999998764432222 23567899999999 88888999999998875555431 11111123443
Q ss_pred ---------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 241 ---------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 241 ---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
.+|++|+|+|-. +.++++|+|+-+.+|++... +.+..+..-...|.+++|+.++ ..||.
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~slsfs~dG---------~~LAi 291 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSLSFSMDG---------SLLAI 291 (323)
T ss_pred cccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch--hhhhhccCCCCceEEEEeccCC---------CeEEE
Confidence 379999999985 88888888888778887763 5666676667789999999999 58888
Q ss_pred eec
Q 020107 312 CSF 314 (331)
Q Consensus 312 ~~~ 314 (331)
+++
T Consensus 292 a~s 294 (323)
T KOG1036|consen 292 ASS 294 (323)
T ss_pred Eec
Confidence 864
No 116
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.3e-28 Score=185.86 Aligned_cols=241 Identities=15% Similarity=0.128 Sum_probs=201.6
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|..+|.+++=+|.. -..+++|+.||.+ +|++... +.|.+.|..|++.. ..+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 333458899999999999984 2689999999999 9999874 44889999999976 7799999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
.|.++.. ++.++.+ ...+..+.-+. ..+.+++++. .|.|||.+...++..+.. ....|.++.|+|....+
T Consensus 133 ~wk~~~~---p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smsw---G~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 133 QWKIDGP---PLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSW---GADSISSVKFNPVETSI 202 (433)
T ss_pred eeeccCC---cceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccceeec---CCCceeEEecCCCcchh
Confidence 9998753 4666664 45677887765 6678888874 588999988877888887 67889999999977788
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
|++++.|+.|.+||++.. .|+.. ......-+.|+|+|.. ..++++..|..++.++++.. ..++..+.+|.++|.+
T Consensus 203 Las~~sDrsIvLyD~R~~-~Pl~K--Vi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l-~~p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQA-SPLKK--VILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNL-SRPLNVHKDHVSAVMD 277 (433)
T ss_pred eeeeccCCceEEEecccC-Cccce--eeeeccccceecCccc-cceeeccccccceehhhhhh-cccchhhcccceeEEE
Confidence 999999999999999995 77777 5556677899999954 56666667778888998887 6788899999999999
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++|+|.| +-++||| .|.+|+||.+..+.
T Consensus 278 VdfsptG---------~Efvsgs-yDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 278 VDFSPTG---------QEFVSGS-YDKSIRIFPVNHGH 305 (433)
T ss_pred eccCCCc---------chhcccc-ccceEEEeecCCCc
Confidence 9999999 6899999 99999999987653
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.4e-26 Score=202.29 Aligned_cols=251 Identities=18% Similarity=0.241 Sum_probs=194.9
Q ss_pred ee-cCcEeEEEEcCCCCCCCCeEEEEc--CCccE-EEecCCC------------------cccCccEEEEEEcCCCCeEE
Q 020107 64 MD-TAGIFDIKWSPVGGNAGPFLAQAD--ADGGL-LRDITGE------------------KISSSMCLCLEWNPSATSIT 121 (331)
Q Consensus 64 ~~-~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i-iw~~~~~------------------~~~~~~v~~~~~~~~~~~l~ 121 (331)
.| ...|.++..+|+ +..+++|+ .||.+ +|+...- ..|.+.|.|+.|+|||++||
T Consensus 10 ~H~~~~IfSIdv~pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccCCeeEEEEEecCC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 34 345999999999 99999999 88888 8876431 12688999999999999999
Q ss_pred EEecCCeEEEEEccc----------------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 122 VGLSDGSVSIVSVVE----------------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 122 ~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
+|++|+.|.||+... .+++.+..+.+|...|..++|+| ++.++++++.|++|.+|+.++.+..
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceee
Confidence 999999999999872 13456778889999999999999 8899999999999999999999888
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
..+.. |...|..+.|.| -|++||+-+.|++|++|++.+.. +|..+ ......+.++.|+|||..+....
T Consensus 165 ~vl~~---H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 165 KVLRG---HQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeeec---ccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhh--CCCcceeeecccCCCcCeecchh
Confidence 88877 999999999999 99999999999999999976631 11111 23344578999999974333334
Q ss_pred EecCcEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCccc---ccc-cC----cEEEEeecCCCeEEEEcCCC
Q 020107 260 CMHNGFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLE---GKR-KN----SLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---~~~-~~----~~l~s~~~~d~~i~iW~~~~ 326 (331)
+..++.....+-+ ...+.-..+-||..++..+.|+|.--+.. +.+ .. ..+|+|| .|++|.||....
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS-qDrSlSVW~T~~ 313 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS-QDRSLSVWNTAL 313 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-CCccEEEEecCC
Confidence 4555544444322 33566677889999999999999521100 001 11 1677888 999999999754
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=7.1e-26 Score=168.71 Aligned_cols=221 Identities=16% Similarity=0.204 Sum_probs=185.7
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
...+|..+++.+.++.+ +++|.+++.|.++ +|-..+++ .|.+.|+|+..+-+.+.+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCC----CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 45789999999999999 9999999999999 88664433 3899999999999999999999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-----CCeEEEEEccCCC-------ceeeeecccCCCcceEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-----DCKFSGWDIRESP-------FKLAFQNSKIHKMGVCCI 201 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~~ 201 (331)
+++++. +..++ -..+|..+.|++ ++++++.+.+ .+.|.++|++... +...+.. +.+.++.+
T Consensus 81 v~tGk~--la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~skit~a 153 (327)
T KOG0643|consen 81 VETGKQ--LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDSKITSA 153 (327)
T ss_pred cCCCcE--EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Cccceeee
Confidence 999975 66666 456899999998 7777776653 4789999998432 2333433 78999999
Q ss_pred EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (331)
-|.| .+..|++|.+||.|..||++++.+.+.. ...|...|+.++++|+. .++++++.|...++|++... +.++++
T Consensus 154 ~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl--~v~Kty 228 (327)
T KOG0643|consen 154 LWGP-LGETIIAGHEDGSISIYDARTGKELVDS-DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL--EVLKTY 228 (327)
T ss_pred eecc-cCCEEEEecCCCcEEEEEcccCceeeec-hhhhccccccccccCCc-ceEEecccCccceeeeccce--eeEEEe
Confidence 9999 9999999999999999999997444443 57899999999999997 78888888999899999884 777777
Q ss_pred ecCCcceeeeeecCCCC
Q 020107 282 AKHGSLAYGADWQRGRS 298 (331)
Q Consensus 282 ~~h~~~v~~~~~~~~~~ 298 (331)
.. ..+|++.+++|...
T Consensus 229 ~t-e~PvN~aaisP~~d 244 (327)
T KOG0643|consen 229 TT-ERPVNTAAISPLLD 244 (327)
T ss_pred ee-cccccceecccccc
Confidence 75 67899999999874
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=176.14 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=215.1
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|..+|+.++-... ..++.+++.|.+. ||.++++.+ |.+.|++++|++.+.++++++.|++..
T Consensus 140 lvre~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred ehhhhcccccceeeehhhcC----CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 44556899999999998887 6799999999999 999999876 789999999999999999999999999
Q ss_pred EEEcc------cc--------------------------------ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC
Q 020107 131 IVSVV------ES--------------------------------QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC 172 (331)
Q Consensus 131 i~d~~------~~--------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 172 (331)
||... .+ -..++..+.+|...|.+..|-. .++.+++++-|.
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDR 294 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccc
Confidence 99721 10 0135667889999999999996 889999999999
Q ss_pred eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107 173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 173 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
+..+||++++..+..+.. |....+.++-+| ..+++++.+.|.+.++||++.. -+....+.+|...|+++.|.-+
T Consensus 295 TAnlwDVEtge~v~~LtG---Hd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~d- 368 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTG---HDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTD- 368 (481)
T ss_pred cceeeeeccCceeccccC---cchhccccccCC-cceEEEEeccCceeEeccchhh-cceeeeecccccceeEEEEecC-
Confidence 999999999998888887 999999999999 9999999999999999999964 3444457899999999999998
Q ss_pred CCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 253 PGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
..+++++.|..+++|++.+. ..++.+++. .+++..++.+... ..|+.-- ++..|++||++...+.
T Consensus 369 -d~vVSgSDDrTvKvWdLrNM-RsplATIRt-dS~~NRvavs~g~---------~iIAiPh-DNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 369 -DRVVSGSDDRTVKVWDLRNM-RSPLATIRT-DSPANRVAVSKGH---------PIIAIPH-DNRQVRLFDLNGNRLA 433 (481)
T ss_pred -CceeecCCCceEEEeeeccc-cCcceeeec-CCccceeEeecCC---------ceEEecc-CCceEEEEecCCCccc
Confidence 77888888889999999997 566777764 5788999999987 4888888 8899999999877654
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-25 Score=160.41 Aligned_cols=239 Identities=19% Similarity=0.293 Sum_probs=187.5
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-------EEecCC---------------CcccCccEEEEEEcCCCCeEEE
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-------LRDITG---------------EKISSSMCLCLEWNPSATSITV 122 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-------iw~~~~---------------~~~~~~~v~~~~~~~~~~~l~~ 122 (331)
....|.+++|+|. +.+.++|+...+. +-+++. .+.|.+.|+|.+|+|.|++|++
T Consensus 31 dsqairav~fhp~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred chhheeeEEecCC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4577999999999 8999999998887 333321 2236889999999999999999
Q ss_pred EecCCeEEEEEccccce---eeeeeeecccceeEEEeeCCC---CCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCC
Q 020107 123 GLSDGSVSIVSVVESQL---EVLQQWKAHEFELWATSFDVH---QPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 123 ~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
|+.|.+|++.-.+.... -+-.++..|.+.|..++|-.. .+.+|++++ .|..|++-|...++....+.. |.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg---ht 183 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG---HT 183 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC---Cc
Confidence 99999999977654322 123567889999999999732 245666655 577888888888887777766 99
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eec-----CCceEEEEECCCCCCeEEEEE-ecCcEEEE
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCL-----GGGVWRIKHHPFIPGLVLAAC-MHNGFAVV 268 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 268 (331)
+.|.++-- - ++-++++|+.|.+|++||++-. ..+.... ..| ...|.+++..|.+ .++++| .+....+|
T Consensus 184 ghilalys-w-n~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~ly 258 (350)
T KOG0641|consen 184 GHILALYS-W-NGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLY 258 (350)
T ss_pred ccEEEEEE-e-cCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEE
Confidence 99988742 2 6789999999999999999974 3333311 112 2568999999994 455555 56667889
Q ss_pred EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+++. ++.++.+..|...|.++.|+|.. .++++|+ .|..|++=|+...
T Consensus 259 dirg--~r~iq~f~phsadir~vrfsp~a---------~yllt~s-yd~~ikltdlqgd 305 (350)
T KOG0641|consen 259 DIRG--GRMIQRFHPHSADIRCVRFSPGA---------HYLLTCS-YDMKIKLTDLQGD 305 (350)
T ss_pred EeeC--CceeeeeCCCccceeEEEeCCCc---------eEEEEec-ccceEEEeecccc
Confidence 9988 69999999999999999999998 7999999 9999999998754
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.3e-25 Score=167.20 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=195.4
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcC--CCCeEEEEe
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNP--SATSITVGL 124 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~--~~~~l~~~~ 124 (331)
+..+..+|..-|.++.|.+. |+.+|+|+.|+++ ||+.... +.|.+.|..+.|.+ -|+.+|+++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ccccccCCcceeeeeeeccc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 44566788999999999999 9999999999999 9996443 23789999999975 688999999
Q ss_pred cCCeEEEEEccc-------cceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeec------
Q 020107 125 SDGSVSIVSVVE-------SQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQN------ 190 (331)
Q Consensus 125 ~dg~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------ 190 (331)
.|+++.||.-.. .++....++......|+++.|.|. -+-.+++++.||.||||+.........++.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999998632 234445566667789999999984 356799999999999999876543333222
Q ss_pred ----ccCCCcceEEEEEecC--CCCEEEEEecC-----CeEEEEEecCCCCCcee--eeeecCCceEEEEECCCCC--Ce
Q 020107 191 ----SKIHKMGVCCIASIPS--DSNTLLTGSYD-----EYLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHPFIP--GL 255 (331)
Q Consensus 191 ----~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~--~~ 255 (331)
...+..+..|+.|+|. ...+||+|+.+ +.++||......+.... .+..|..+|+.++|.|+-. ..
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 1125667889999983 25678888866 47999988765422221 2458999999999999642 34
Q ss_pred EEEEEecCcEEEEEEcCcc------------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 256 VLAACMHNGFAVVKVGGEK------------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
+++.+..++++||++.... -+.+..+.+|.+.|+.+.|+-.| ..|+|.| .||
T Consensus 241 ~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG---------tiLsStG-dDG 310 (361)
T KOG2445|consen 241 LLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG---------TILSSTG-DDG 310 (361)
T ss_pred eEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee---------eEEeecC-CCc
Confidence 6666666669999997311 33556677999999999999999 7999999 999
Q ss_pred eEEEEcCC
Q 020107 318 LLRIWMPE 325 (331)
Q Consensus 318 ~i~iW~~~ 325 (331)
.||+|...
T Consensus 311 ~VRLWkan 318 (361)
T KOG2445|consen 311 CVRLWKAN 318 (361)
T ss_pred eeeehhhh
Confidence 99999864
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=179.58 Aligned_cols=238 Identities=16% Similarity=0.183 Sum_probs=189.9
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+.||...|.+..++++...+++++ .|-.|+||...... .......|..+|+.+..+|. +++|+
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aS----------ad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~t----geYll 319 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITAS----------ADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPT----GEYLL 319 (506)
T ss_pred hccCcceEEEEEEeccchhheeecC----------CcceEEeecccccc--CccccccccccceeeeeccC----CcEEE
Confidence 4677877777777777668888888 89999999998876 33445789999999999999 99999
Q ss_pred EEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107 87 QADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF 157 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 157 (331)
+++.||.. +.+++++.. ..-.+++.+|+|||..|.+|..||.|++||+.++. .+..|.+|.++|..++|
T Consensus 320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISF 397 (506)
T ss_pred EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEe
Confidence 99999999 777776543 12458899999999999999999999999999875 47889999999999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-CCceeee
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-KPVNETS 236 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~ 236 (331)
+. ++.+++++.+|+.|++||+|..+..+.+... ...++.++.|.+ .|.+|+.++.|=+|++++-.+.. ..+.. +
T Consensus 398 sE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~-~ 472 (506)
T KOG0289|consen 398 SE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKE-L 472 (506)
T ss_pred cc-CceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeeh-h
Confidence 96 8999999999999999999998877777762 234799999999 99999999887666666643311 22222 3
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
..|.+..+.+.|.... .+++.++.+..++++
T Consensus 473 ~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHA-QYLASTSMDAILRLY 503 (506)
T ss_pred hhcccccceeeecccc-eEEeeccchhheEEe
Confidence 5677888999998874 444444454444443
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=181.03 Aligned_cols=252 Identities=18% Similarity=0.255 Sum_probs=196.8
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcCCC-CeEEEEecCC
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNPSA-TSITVGLSDG 127 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~~-~~l~~~~~dg 127 (331)
...+.+.+.|++++|+|..+ .+++|+|..-|.+ +|++.+.+ .|..+|.++.|+|.. ..+++.+.||
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 34467889999999999853 3689999999999 99996322 268899999999955 5699999999
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecC
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
+|+.-|++....+.+.........+..+.|+. +...++.+..=|...+||+|++.. ...+.. |...|++|+++|.
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l---h~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRL---HKKKITSVALNPV 333 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhh---hhcccceeecCCC
Confidence 99999999876655555554556678888886 556666677677999999998765 444555 8999999999999
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--ccceeEEee
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--KAEVLETYA 282 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 282 (331)
...+|+|++.|++.+|||+|...... ......|...|.+..|||.+ +.++++|.|+.|++|+..-. ...+..++.
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCCccceee
Confidence 99999999999999999999853221 12247899999999999998 66999999999999998411 022233322
Q ss_pred -cCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 283 -KHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 283 -~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+. -......|.|+. .+|+.+- .-..|-|+|-+.+.
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~---------~li~vg~-~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDY---------NLIVVGR-YPRPIDVFDGNGGQ 453 (498)
T ss_pred ccCcccccccchhheeCCCc---------cEEEEec-cCcceeEEcCCCCE
Confidence 111 134567899987 7999998 89999999988765
No 124
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=192.59 Aligned_cols=291 Identities=18% Similarity=0.285 Sum_probs=228.4
Q ss_pred eeeeec-CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC
Q 020107 4 AHCELD-GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG 82 (331)
Q Consensus 4 ~~~~~~-~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 82 (331)
.++..+ |.+..++|-.+++ .++|+|. ..|.+.+||++... ....+...|.+.|....|.|. .
T Consensus 238 ~sFk~d~g~VtslSFrtDG~--p~las~~----------~~G~m~~wDLe~kk-l~~v~~nah~~sv~~~~fl~~----e 300 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGN--PLLASGR----------SNGDMAFWDLEKKK-LINVTRNAHYGSVTGATFLPG----E 300 (910)
T ss_pred EEEEccccceeEEEeccCCC--eeEEecc----------CCceEEEEEcCCCe-eeeeeeccccCCcccceecCC----C
Confidence 445554 8899999998886 6888887 78999999999886 455566689999999999999 8
Q ss_pred CeEEEEcCCccE-EEecCC----------CcccCccEEEEEEc-CCCCeEEEEecCCeEEEEEcccc-------------
Q 020107 83 PFLAQADADGGL-LRDITG----------EKISSSMCLCLEWN-PSATSITVGLSDGSVSIVSVVES------------- 137 (331)
Q Consensus 83 ~~l~~~~~dg~i-iw~~~~----------~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~------------- 137 (331)
..+++++.|..+ +|-..+ ...|..+..++.|. .++..+.+++.|++.+.+++...
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 899999999998 444332 22366777777776 46666777777776666654320
Q ss_pred -------------ceeeeee-------------------------------------------eecccceeEEEeeCCCC
Q 020107 138 -------------QLEVLQQ-------------------------------------------WKAHEFELWATSFDVHQ 161 (331)
Q Consensus 138 -------------~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~ 161 (331)
+.+++.. ++.-...+++++.++ .
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-C 459 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-C 459 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-c
Confidence 0000000 111225678888887 8
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
+++.+.|+..|.|-+|++.++-....+...+.|..+|+.++... .++.+++++.+|.+++||+.+. .++.. .....
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k-~l~~~--l~l~~ 535 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK-VLKKS--LRLGS 535 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCc-ceeee--eccCC
Confidence 89999999999999999999977777754466999999999987 7889999999999999999973 44444 55667
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
.+..+..+... .++++++.+-.|.++++.. .+.++.+.+|.+.|++++|||++ ++|++++ .|++|++
T Consensus 536 ~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t--~kvvR~f~gh~nritd~~FS~Dg---------rWlisas-mD~tIr~ 602 (910)
T KOG1539|consen 536 SITGIVYHRVS-DLLAIALDDFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDG---------RWLISAS-MDSTIRT 602 (910)
T ss_pred Ccceeeeeehh-hhhhhhcCceeEEEEEchh--hhhhHHhhccccceeeeEeCCCC---------cEEEEee-cCCcEEE
Confidence 78888888775 7777777888888888776 48889999999999999999999 8999999 9999999
Q ss_pred EcCCCccc
Q 020107 322 WMPESDCL 329 (331)
Q Consensus 322 W~~~~~~~ 329 (331)
||+.++.+
T Consensus 603 wDlpt~~l 610 (910)
T KOG1539|consen 603 WDLPTGTL 610 (910)
T ss_pred EeccCcce
Confidence 99998764
No 125
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=180.81 Aligned_cols=239 Identities=18% Similarity=0.268 Sum_probs=191.2
Q ss_pred eEEEEcCCCCCCCCeEEEEcCCccE----EEecCCCc--c--c-----CccEEEEEEcC-------CCCeEEEEecCCeE
Q 020107 70 FDIKWSPVGGNAGPFLAQADADGGL----LRDITGEK--I--S-----SSMCLCLEWNP-------SATSITVGLSDGSV 129 (331)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~dg~i----iw~~~~~~--~--~-----~~~v~~~~~~~-------~~~~l~~~~~dg~i 129 (331)
-.+..-|+ ..+|+++-.+..+ +|-..... . | .....|++|.. .|+++|.|+.|-.|
T Consensus 129 de~~V~ps----DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 129 DEEQVKPS----DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred ccceeccC----CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 45556665 5566666554444 44433322 1 2 34446777753 36799999999999
Q ss_pred EEEEcccc-ceeeeee------------------eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 130 SIVSVVES-QLEVLQQ------------------WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 130 ~i~d~~~~-~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.|||+.-. ...|... ..+|+..|.+++|+..-.+.|++|+.|.+|++||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 99998641 1111111 2358888999999987789999999999999999999999888887
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
|...|.++.|+|..+.+|++|+.|++|.+.|.|.....-.. -...+.|-.++|.|..+..++++..++.++-+++
T Consensus 285 ---~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 285 ---HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred ---cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--EEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 99999999999988999999999999999999964333333 5678899999999998888888888888888999
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+.. ++++.+++.|.+.|.++++++..+ .+++|+| .|+.|++|++...
T Consensus 360 R~~-~~~vwt~~AHd~~ISgl~~n~~~p--------~~l~t~s-~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 360 RNP-GKPVWTLKAHDDEISGLSVNIQTP--------GLLSTAS-TDKVVKLWKFDVD 406 (463)
T ss_pred CCC-CCceeEEEeccCCcceEEecCCCC--------cceeecc-ccceEEEEeecCC
Confidence 887 699999999999999999999988 8999999 9999999998653
No 126
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.95 E-value=4.5e-25 Score=166.40 Aligned_cols=300 Identities=15% Similarity=0.163 Sum_probs=223.7
Q ss_pred ceeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-eEeeecCcEeEEEEcCCCCCC
Q 020107 3 VAHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-LYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 3 ~~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 81 (331)
+.++.-..+..++.|+.....+.+||.|++.... .+.|.|..++.....+.. ....|..+++.+.|.|+..+.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~------~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEY------NNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeecccc------CCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence 4555667788999999775555799999975444 678888887754422222 223578899999999985311
Q ss_pred -CCeEEEEcCCccEEEecCCCc---------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-eeee
Q 020107 82 -GPFLAQADADGGLLRDITGEK---------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-EVLQ 143 (331)
Q Consensus 82 -~~~l~~~~~dg~iiw~~~~~~---------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 143 (331)
-++||+.+ |---+|.+...+ ....++++..|+. +-++|.+++-|-+..|||++++.. ....
T Consensus 112 ~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 112 YPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred Ccchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 23555543 322288876321 1357888999987 446688888899999999998622 1245
Q ss_pred eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEE
Q 020107 144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRV 222 (331)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i 222 (331)
.+-.|+.+|..++|.....+.|++++.||.+|+||+|...-..++...+....+...++|++++.+++|+-..|. .|.+
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 567899999999999866789999999999999999986644444432333678999999999999999988765 6999
Q ss_pred EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc----ceeEEeecCCcceeeeeecCCCC
Q 020107 223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA----EVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
.|+|....++.+ +..|.+.|+.++|.|.....+.++|.|....+|++..... .++..+. -.+.|..+.|++..+
T Consensus 271 LDiR~P~tpva~-L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 271 LDIRVPCTPVAR-LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred EEecCCCcceeh-hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence 999998788877 7899999999999999877888887777788899876522 2233333 456899999998876
Q ss_pred cccccccCcEEEEeecCCCeEEE
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
.+++.+. ++.+.+
T Consensus 349 --------Dwiai~~--~kklei 361 (364)
T KOG0290|consen 349 --------DWIAICF--GKKLEI 361 (364)
T ss_pred --------CEEEEEe--cCeeeE
Confidence 7898886 666554
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-25 Score=184.08 Aligned_cols=283 Identities=13% Similarity=0.181 Sum_probs=211.9
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
+.+.+.||...|......|.|.+||+|+ .||+|+||.+.++. ++..+ ...+.|.+++|+|... ..
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGs----------dDGtvriWEi~TgR-cvr~~--~~d~~I~~vaw~P~~~--~~ 456 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGS----------DDGTVRIWEIATGR-CVRTV--QFDSEIRSVAWNPLSD--LC 456 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecC----------CCCcEEEEEeecce-EEEEE--eecceeEEEEecCCCC--ce
Confidence 4456677777777777777779999999 89999999999986 55554 2346899999999842 33
Q ss_pred eEEEEcCCccE---------------------------------EEecCCC---c-------ccCccEEEEEEcCCCCeE
Q 020107 84 FLAQADADGGL---------------------------------LRDITGE---K-------ISSSMCLCLEWNPSATSI 120 (331)
Q Consensus 84 ~l~~~~~dg~i---------------------------------iw~~~~~---~-------~~~~~v~~~~~~~~~~~l 120 (331)
+||++..+..+ .|.-... + .|...|..+.|+..|.+|
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 56665554422 1221100 0 146778899999999999
Q ss_pred EEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc
Q 020107 121 TVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG 197 (331)
Q Consensus 121 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 197 (331)
++... ...|.|+++...+. ...|....+.|.++.|+| ...+|++++ ...|+|||+......+.+.. ....
T Consensus 537 atV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~t---g~kw 609 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLT---GSKW 609 (733)
T ss_pred EEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhc---CCee
Confidence 98866 45788999986543 344544566799999999 555566555 57899999998665555554 5778
Q ss_pred eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcc--
Q 020107 198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEK-- 274 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 274 (331)
|.+++.+| .|..|+.|+.|+.+..||+.-..+|... +..|...+++++|++. .-|++++++ +.+.++.-.-.+
T Consensus 610 iS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~-lr~H~~avr~Va~H~r--yPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 610 ISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKT-LRLHEKAVRSVAFHKR--YPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHH-hhhhhhhhhhhhhccc--cceeeeecCCCcEEEEeeeeehhh
Confidence 99999999 9999999999999999999987777776 6789999999999998 556666666 555554432111
Q ss_pred -----cceeEEeecCCcc----eeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 275 -----AEVLETYAKHGSL----AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 275 -----~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
--++..+++|... |.++.|+|..+ +|.|+| .||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp---------WLfsAG-Ad~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP---------WLFSAG-ADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCc---------eEEecC-CCceEEee
Confidence 2356677888765 89999999985 888888 89999998
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=178.23 Aligned_cols=212 Identities=15% Similarity=0.189 Sum_probs=167.1
Q ss_pred CccEEEEEEcCCCC--eEEEEecCCeEEEEEccc--------------cceeeeeeeecccceeEEEeeCCCCCcEEEEE
Q 020107 105 SSMCLCLEWNPSAT--SITVGLSDGSVSIVSVVE--------------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTG 168 (331)
Q Consensus 105 ~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 168 (331)
.+.++.+.-++.++ +.++=+..|.|.||++.. .+..++.++.+|...-+.++|+|.....+++|
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 44455555555443 344445689999999864 23456888899999999999999666778999
Q ss_pred cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEE
Q 020107 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKH 248 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 248 (331)
..-+.|++|...++.-..--..+.+|...|-.++|+|.....|++|+.||+|+|||+|...+........|.+.|+-|.|
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW 310 (440)
T ss_pred ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEc
Confidence 98999999999887543222223349999999999997788999999999999999999744433334899999999999
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+... .+|++++.++.+++|+++..+ ++++.+|+.|..+|+++.|+|... ..|+++| .|.+|.+||+.-
T Consensus 311 nr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~--------s~iaasg-~D~QitiWDlsv 379 (440)
T KOG0302|consen 311 NRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED--------SVIAASG-EDNQITIWDLSV 379 (440)
T ss_pred cCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC--------ceEEecc-CCCcEEEEEeec
Confidence 9986 355555566667888887754 678999999999999999999876 7888888 899999999864
No 129
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=9.4e-27 Score=171.88 Aligned_cols=243 Identities=17% Similarity=0.213 Sum_probs=204.3
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------cccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------KISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
.....+|+.+|..++|+|-.|. +-+|++++.||.. +.+-.++ ..|++.|++...+.+....++++.|-+-++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~-g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPD-GYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCC-ceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3456789999999999997766 8899999999999 6655554 348899999999988888999999999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
||.-++.. +..+. |...|.+++|+. +.++|++|+.+..+||||++..+. ...+. +|.+.|..+.|.. ..+.
T Consensus 86 w~a~tgde--lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg~Ir~v~wc~-eD~~ 157 (334)
T KOG0278|consen 86 WDAVTGDE--LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTGGIRTVLWCH-EDKC 157 (334)
T ss_pred hhhhhhhh--hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc---CCCCcceeEEEec-cCce
Confidence 99998854 66665 888999999996 889999999999999999997764 23344 4999999999998 7778
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
+++.+.|++||+||.+++ ..+.. .....+|+++..+++ +.+++.....++.+|+.... .++..++- ...|.+
T Consensus 158 iLSSadd~tVRLWD~rTg-t~v~s--L~~~s~VtSlEvs~d--G~ilTia~gssV~Fwdaksf--~~lKs~k~-P~nV~S 229 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTG-TEVQS--LEFNSPVTSLEVSQD--GRILTIAYGSSVKFWDAKSF--GLLKSYKM-PCNVES 229 (334)
T ss_pred EEeeccCCceEEEEeccC-cEEEE--EecCCCCcceeeccC--CCEEEEecCceeEEeccccc--cceeeccC-cccccc
Confidence 888899999999999996 55555 677889999999999 66777777788888887774 56666653 467899
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...+|+. .+++.|+ +|..++.||..++.
T Consensus 230 ASL~P~k---------~~fVaGg-ed~~~~kfDy~Tge 257 (334)
T KOG0278|consen 230 ASLHPKK---------EFFVAGG-EDFKVYKFDYNTGE 257 (334)
T ss_pred ccccCCC---------ceEEecC-cceEEEEEeccCCc
Confidence 9999998 6999999 99999999999875
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=170.27 Aligned_cols=278 Identities=15% Similarity=0.203 Sum_probs=202.3
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
+..|++|++.+ .+||+|. .||.|.|||+.+.. +..++.+|..+|.+++||++ +++|++++.
T Consensus 25 ~a~~~~Fs~~G---~~lAvGc----------~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~d----gr~LltsS~ 85 (405)
T KOG1273|consen 25 LAECCQFSRWG---DYLAVGC----------ANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRD----GRKLLTSSR 85 (405)
T ss_pred ccceEEeccCc---ceeeeec----------cCCcEEEEEccccc--hhhhhhccccceeEEEecCC----CCEeeeecC
Confidence 47788888888 8999998 89999999999986 66777899999999999999 999999999
Q ss_pred CccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeee-c-ccceeEEEeeCCCC
Q 020107 91 DGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWK-A-HEFELWATSFDVHQ 161 (331)
Q Consensus 91 dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~ 161 (331)
|..+ +||+..+.+. .++|+...|+|.....++++- +..-.+.++..++...+..-. + -.....+..|.+ .
T Consensus 86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~ 164 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-R 164 (405)
T ss_pred CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-C
Confidence 9999 9999988763 788999999996654433332 444555555543211111100 0 111222345776 8
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----ce--
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK-MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----VN-- 233 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~-- 233 (331)
++++++|...|.+.++|..+.+++..++. .. ..|..+.++. .+..|+..+.|..||.|+++....+ +.
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~ri---ts~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~ 240 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRI---TSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPE 240 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeee---chheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChh
Confidence 89999999999999999999988888776 34 7899999998 9999999999999999998742111 00
Q ss_pred -ee-eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCC-cceeeeeecCCCCcccccccCcEE
Q 020107 234 -ET-SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHG-SLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 234 -~~-~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
.+ ..-....-.+++|+.++ .++++++ ....+++|.- ..+.+++.+.|.. ....++.|+|-.+ .+
T Consensus 241 ~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~--~~GsLVKILhG~kgE~l~DV~whp~rp---------~i 308 (405)
T KOG1273|consen 241 HKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEK--SIGSLVKILHGTKGEELLDVNWHPVRP---------II 308 (405)
T ss_pred HHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEec--CCcceeeeecCCchhheeeccccccee---------ee
Confidence 00 00112234568888885 3333332 2233334433 3388999998877 6788999999984 77
Q ss_pred EEeecCCCeEEEEcCCC
Q 020107 310 ATCSFYDRLLRIWMPES 326 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~~~ 326 (331)
++.. .|.|++|....
T Consensus 309 ~si~--sg~v~iw~~~~ 323 (405)
T KOG1273|consen 309 ASIA--SGVVYIWAVVQ 323 (405)
T ss_pred eecc--CCceEEEEeec
Confidence 7775 89999998754
No 131
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=188.87 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=199.6
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
++..+..+ +++|++|+.||.+ +|+..... .|..-|..+....+++.|++++.|-+|++|+....
T Consensus 29 ~Lq~da~~---~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPN---GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCC---CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC
Confidence 44444443 6789999999999 99876532 25666777888888999999999999999999876
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--eee------eecccCCCcceEEEEEecCCCC
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--KLA------FQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~------~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
.--++..+..|...|.|+++-..+..++++|+-|+.|.+||+.++.. ... -....++...|++++.++ .+.
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t 184 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGT 184 (735)
T ss_pred cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cce
Confidence 43457788899999999999434788999999999999999997732 111 111225888999999999 899
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY 289 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 289 (331)
.+++|+..+.+++||.++.++.+.. .+|...|..+..+++| ..++++++|+.|++|++.. .+++.++..|...|+
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkL--rGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgq--QrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKL--RGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQ--QRCLATYIVHKEGVW 259 (735)
T ss_pred EEEecCcccceEEeccccccceeee--eccccceEEEEEcCCC-CeEeecCCCceEEeeeccc--cceeeeEEeccCceE
Confidence 9999999999999999997665554 7999999999999998 7889999999999999988 589999999999999
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++..+|+- ..+.+|+ .||.|..=|+.+
T Consensus 260 aL~~~~sf---------~~vYsG~-rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 260 ALQSSPSF---------THVYSGG-RDGNIYRTDLRN 286 (735)
T ss_pred EEeeCCCc---------ceEEecC-CCCcEEecccCC
Confidence 99999988 6999999 999999888776
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.3e-24 Score=177.97 Aligned_cols=279 Identities=16% Similarity=0.179 Sum_probs=218.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee-cCcEeEEEEcCCCCCCCCeEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
...+.+++++..+ +.||++- .+|.|.+|++...- -...+..++ ...|.+++|++. ..|.+
T Consensus 25 Ps~I~slA~s~kS---~~lAvsR----------t~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e~-----~RLFS 85 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS---NQLAVSR----------TDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAEG-----GRLFS 85 (691)
T ss_pred ccceEEEEEeccC---Cceeeec----------cCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEccC-----CeEEe
Confidence 4567788888877 7899997 89999999998864 333343444 456999999954 58889
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
.+.+|.+ .||+.+.+. ..+.|++++.+|.+..+++|+.||.+..++...++......+....+.|.+++|+|
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~- 164 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP- 164 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-
Confidence 9999999 999988654 47889999999999999999999988888888887766667766778999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeee-----ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAF-----QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
++..+++|+.||.|++||..++...... ...+....-|.++.+-. ...|++|..-|+|.+||...+ ..+..
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~g-TLiqS- 240 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFG-TLIQS- 240 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCc-chhhh-
Confidence 7788999999999999999988765522 22111334577888874 568999999999999999986 33433
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc--eeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE--VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
...|.+.|.+++-.+++ ..++++|.+..+..+.......+ .......|...|.+++..++ .+++||
T Consensus 241 ~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----------~l~sgG 308 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----------ALISGG 308 (691)
T ss_pred hhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----------eEEecc
Confidence 47899999999999987 78889999999666665543221 22233468888889888876 688888
Q ss_pred cCCCeEEEEcC
Q 020107 314 FYDRLLRIWMP 324 (331)
Q Consensus 314 ~~d~~i~iW~~ 324 (331)
.|..+.+=..
T Consensus 309 -~d~~l~i~~s 318 (691)
T KOG2048|consen 309 -RDFTLAICSS 318 (691)
T ss_pred -eeeEEEEccc
Confidence 8888876544
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.1e-26 Score=185.74 Aligned_cols=240 Identities=16% Similarity=0.220 Sum_probs=196.4
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
.|..-|.++..+.. .+.+.+|+..+.-+|++..... ....|.++...|||+.|++|++-.++.||
T Consensus 417 ~HGEvVcAvtIS~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 36677889999988 8899999886666999976422 24567888999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
|+..........+.......++++.+| +.++.+++..||.|.|||+++...+..|+. |.+.+.||.+++ +|..|-
T Consensus 493 DLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqG---htDGascIdis~-dGtklW 567 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISK-DGTKLW 567 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccC---CCCCceeEEecC-CCceee
Confidence 999876544455555556788999999 889999999999999999999887777777 999999999999 999999
Q ss_pred EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 292 (331)
||+.|.+||.||++.+.+ +.+ ..+...|.++-++|.+ -.++.|+.++ .+|-+... +.....+.-|.+-|.++.
T Consensus 568 TGGlDntvRcWDlregrq-lqq--hdF~SQIfSLg~cP~~--dWlavGMens-~vevlh~s-kp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQ-LQQ--HDFSSQIFSLGYCPTG--DWLAVGMENS-NVEVLHTS-KPEKYQLHLHESCVLSLK 640 (705)
T ss_pred cCCCccceeehhhhhhhh-hhh--hhhhhhheecccCCCc--cceeeecccC-cEEEEecC-CccceeecccccEEEEEE
Confidence 999999999999999744 444 6788899999999995 4555565554 13333333 455566778999999999
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
|.+.+ +++++.| .|..+..|...-|..
T Consensus 641 Fa~cG---------kwfvStG-kDnlLnawrtPyGas 667 (705)
T KOG0639|consen 641 FAYCG---------KWFVSTG-KDNLLNAWRTPYGAS 667 (705)
T ss_pred ecccC---------ceeeecC-chhhhhhccCccccc
Confidence 99999 7999999 999999999876543
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=164.72 Aligned_cols=255 Identities=15% Similarity=0.196 Sum_probs=192.6
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+..|..+|.....+. .++|+|+ .|-+|+|||+.... .+..+ -.|.+.|+++.|.+... ...|++
T Consensus 39 ~~aH~~sitavAVs~--~~~aSGs----------sDetI~IYDm~k~~-qlg~l-l~HagsitaL~F~~~~S--~shLlS 102 (362)
T KOG0294|consen 39 FSAHAGSITALAVSG--PYVASGS----------SDETIHIYDMRKRK-QLGIL-LSHAGSITALKFYPPLS--KSHLLS 102 (362)
T ss_pred ccccccceeEEEecc--eeEeccC----------CCCcEEEEeccchh-hhcce-eccccceEEEEecCCcc--hhheee
Confidence 344444444444432 7999998 89999999999876 45544 46899999999999821 228999
Q ss_pred EcCCccE-EEecCC------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITG------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
|+.||.+ +|+... .+.|...|+.++.+|.+++.++.+.|+.++.|++-.++...+..+. + ..+.+.|+|
T Consensus 103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~--~at~v~w~~- 178 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-N--KATLVSWSP- 178 (362)
T ss_pred ecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-C--cceeeEEcC-
Confidence 9999999 998765 3457888999999999999999999999999999998765555554 2 234599998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
.+.+++.+.. ..|-+|.+.+......+.. ...+.++.|. ++..|++|+.|+.|++||... ..++.. +.+|.
T Consensus 179 ~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds-~~~~~~-~~AH~ 249 (362)
T KOG0294|consen 179 QGDHFVVSGR-NKIDIYQLDNASVFREIEN----PKRILCATFL--DGSELLVGGDNEWISLKDTDS-DTPLTE-FLAHE 249 (362)
T ss_pred CCCEEEEEec-cEEEEEecccHhHhhhhhc----cccceeeeec--CCceEEEecCCceEEEeccCC-Ccccee-eecch
Confidence 6777776664 4688999987765444443 4567777776 688999999999999999998 466665 68999
Q ss_pred CceEEEEEC--CCCCCeEEEEEecCcEEEEEEcCcc---cceeEEeecCCcceeeeee
Q 020107 241 GGVWRIKHH--PFIPGLVLAACMHNGFAVVKVGGEK---AEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 241 ~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~ 293 (331)
.+|..+.+- |++ .+++++++++.|++|++.... +.++..+.. ...++++..
T Consensus 250 ~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 250 NRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred hheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 999999843 343 688888999999999997642 344554443 445555543
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.4e-24 Score=181.26 Aligned_cols=292 Identities=15% Similarity=0.209 Sum_probs=220.5
Q ss_pred eecCcce---eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-----------------------c---
Q 020107 7 ELDGNAD---AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-----------------------N--- 57 (331)
Q Consensus 7 ~~~~~~~---~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-----------------------~--- 57 (331)
.++||.+ +++|...+.+.-+||+++ .|..||||.+..... .
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~S----------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSS----------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecC----------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5667654 555655554445888887 899999999753320 0
Q ss_pred ---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc--CccEEEEEEcCCCCeE
Q 020107 58 ---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS--SSMCLCLEWNPSATSI 120 (331)
Q Consensus 58 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~--~~~v~~~~~~~~~~~l 120 (331)
+..+..+|.+.|+++.|+|. +..|++++.|.++ +|...... .. .......-|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~----~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPE----GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccc----hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 11234589999999999999 8889999999998 88766542 11 3447788999999999
Q ss_pred EEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---------------
Q 020107 121 TVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--------------- 184 (331)
Q Consensus 121 ~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------- 184 (331)
++-+..|..++|.... ..+.+...+.+|...|.+++|+| .+.+|++.+.|.+-|++-.-..+.
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 9999999999999333 33444556779999999999999 788999999888877764320000
Q ss_pred -----ee---------------e---------------------------------------------------------
Q 020107 185 -----KL---------------A--------------------------------------------------------- 187 (331)
Q Consensus 185 -----~~---------------~--------------------------------------------------------- 187 (331)
+. .
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 00 0
Q ss_pred ---------------------------eecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecCCCCCceee
Q 020107 188 ---------------------------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRSISKPVNET 235 (331)
Q Consensus 188 ---------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~ 235 (331)
....-+|...|++++.+| +++++|+++... .|++|+..+..+...
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~-- 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQE-- 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhhe--
Confidence 000114788899999999 999999998653 599999998644432
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
+..|.-.|+.++|+|++ .+|++.+.|....+|...+.. .......+.|+.-|++++|+|+. .+++|+|
T Consensus 568 L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde---------~~FaTaS 637 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE---------KYFATAS 637 (764)
T ss_pred ecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc---------ceeEEec
Confidence 58999999999999998 888899898888888775431 11233367899999999999998 6899999
Q ss_pred cCCCeEEEEcCCCc
Q 020107 314 FYDRLLRIWMPESD 327 (331)
Q Consensus 314 ~~d~~i~iW~~~~~ 327 (331)
.|.+|++|...++
T Consensus 638 -RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 -RDKKVKVWEEPDL 650 (764)
T ss_pred -CCceEEEEeccCc
Confidence 9999999998776
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.4e-23 Score=171.59 Aligned_cols=265 Identities=13% Similarity=0.079 Sum_probs=185.3
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCCc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGEK 102 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~~ 102 (331)
+++++++ .++.|++||+.+.+ .+..+ ..+ ..+..++|+|+ ++.+ ++++.++.+ +|+..+.+
T Consensus 2 ~~~~s~~----------~d~~v~~~d~~t~~-~~~~~-~~~-~~~~~l~~~~d----g~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNE----------KDNTISVIDTATLE-VTRTF-PVG-QRPRGITLSKD----GKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEec----------CCCEEEEEECCCCc-eEEEE-ECC-CCCCceEECCC----CCEEEEEECCCCeEEEEECCCCc
Confidence 5677776 79999999998765 33333 433 34678999999 7765 667788888 99988754
Q ss_pred cc-----CccEEEEEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-eEE
Q 020107 103 IS-----SSMCLCLEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-KFS 175 (331)
Q Consensus 103 ~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~ 175 (331)
.. ...+..+.|+|+++.++++ ..++.|++||+.+.+. +..+.. ...+.+++|+| ++.+++++..++ .+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 65 VIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAH 140 (300)
T ss_pred EEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEE
Confidence 31 2335678999999987665 4589999999987643 444442 33467899999 778888877665 567
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCceeeeee----c--CCceEEEEE
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNETSVC----L--GGGVWRIKH 248 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~----~--~~~v~~~~~ 248 (331)
+||.++++....... ...+.++.|+| ++.+|++ +..++.|++||+++. +.+..+... + ......++|
T Consensus 141 ~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred EEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEE
Confidence 889987765443332 34567899999 8877754 456999999999985 333321111 1 112356889
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEe-ecCCCeEEEEcCCCc
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC-SFYDRLLRIWMPESD 327 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~~d~~i~iW~~~~~ 327 (331)
+|+++..+++.+.++.+.+|++.. ++....+. +...+.+++|+|++ ++|+++ + .++.|++||+.++
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~~~~g---------~~l~~~~~-~~~~i~v~d~~~~ 281 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKT--YEVLDYLL-VGQRVWQLAFTPDE---------KYLLTTNG-VSNDVSVIDVAAL 281 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CcEEEEEE-eCCCcceEEECCCC---------CEEEEEcC-CCCeEEEEECCCC
Confidence 999744455555667788888754 45544443 34578999999999 466664 5 6999999999987
Q ss_pred cc
Q 020107 328 CL 329 (331)
Q Consensus 328 ~~ 329 (331)
..
T Consensus 282 ~~ 283 (300)
T TIGR03866 282 KV 283 (300)
T ss_pred cE
Confidence 53
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=4.2e-23 Score=166.77 Aligned_cols=274 Identities=13% Similarity=0.169 Sum_probs=210.4
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeee-cCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMD-TAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+...+|+|..+ +++++.+ .|.+..|++..+... ..-+++.+ ..-|.+++|.++ + -+++
T Consensus 201 e~v~~a~FHPtd~--nliit~G-----------k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en----g-dviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDP--NLIITCG-----------KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN----G-DVIT 262 (626)
T ss_pred ceEEEEEeccCCC--cEEEEeC-----------CceEEEEEccCCceEEEeeccccccceEEEEEEEcCC----C-CEEe
Confidence 3456788999987 7888876 999999999876511 11122223 355999999998 3 5789
Q ss_pred EcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee--------------------
Q 020107 88 ADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-------------------- 140 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------- 140 (331)
|..+|.+ ||+..+.+ .|++.|.++....+|.+|- |+.|..|..||-.-.+..
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence 9999999 99987654 3789999999988887555 999999999983311100
Q ss_pred ------------------eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE
Q 020107 141 ------------------VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202 (331)
Q Consensus 141 ------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 202 (331)
......+|......++.+| +.+++++++.|+.+++|+ ..+.+.... -..++.|+.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~ 414 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECAD 414 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEee
Confidence 0111235777889999999 778999999999999999 333343333 377899999
Q ss_pred EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
|+| .+ .++.|...|...+.|.++ ...+.. ...+.+++.++|+|++ .+++.++-|+.+.+|.+.....+....-+
T Consensus 415 fhp-sg-~va~Gt~~G~w~V~d~e~-~~lv~~--~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 415 FHP-SG-VVAVGTATGRWFVLDTET-QDLVTI--HTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred ccC-cc-eEEEeeccceEEEEeccc-ceeEEE--EecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 999 77 999999999999999998 344443 3448999999999998 77778888889999999887433333334
Q ss_pred cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
.|..+|+.++|++|+ ++|.+-+ -|-.|-.|...
T Consensus 489 ~~gs~ithLDwS~Ds---------~~~~~~S-~d~eiLyW~~~ 521 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDS---------QFLVSNS-GDYEILYWKPS 521 (626)
T ss_pred ecCceeEEeeecCCC---------ceEEecc-CceEEEEEccc
Confidence 556899999999999 7999999 99999999543
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-23 Score=160.03 Aligned_cols=271 Identities=15% Similarity=0.229 Sum_probs=184.2
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+|.+-|....++++|+.+|+++ .|++|+|||....... .....+.|.+.|..+.|.+..- |+.+|+
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCS----------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf--GqvvA~ 78 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCS----------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF--GQVVAT 78 (361)
T ss_pred CCcceeeeeeecccCceeeecc----------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc--cceEEE
Confidence 3434444444455559999998 8999999997654433 4445678999999999976432 899999
Q ss_pred EcCCccE-EEecCCC--cc-------------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEcccc----ceeeeeee
Q 020107 88 ADADGGL-LRDITGE--KI-------------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVES----QLEVLQQW 145 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~--~~-------------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~ 145 (331)
++.|+++ ||+-... +. ..+.|+++.|.|. |-.+|+++.||.+|||+.-.. ++....++
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 9999999 9976322 11 3678999999994 556899999999999997652 12222222
Q ss_pred e-------cccceeEEEeeCCC--CCcEEEEEcCC-----CeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCC--
Q 020107 146 K-------AHEFELWATSFDVH--QPHMVYTGSDD-----CKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDS-- 208 (331)
Q Consensus 146 ~-------~~~~~v~~~~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-- 208 (331)
+ .+..+..|+.|+|. ...+|+.|+.+ +.+.||...... .-......+.|..+|+.|+|.|.-|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 2 35567889999973 24678888765 478888776543 2222222345999999999999533
Q ss_pred -CEEEEEecCCeEEEEEecCCCC----------------Cce--eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 209 -NTLLTGSYDEYLRVWDVRSISK----------------PVN--ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 209 -~~l~~~~~d~~i~iwd~~~~~~----------------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
.+||+++.|| |+||.++.... ++. ..+..|.+.|+++.|+-.| ..|.++|.|+.+++|+
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWK 316 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehh
Confidence 5799999999 99999984211 111 1246799999999999985 4555555666666666
Q ss_pred EcCc-ccceeEEeecCCcceeeeeecC
Q 020107 270 VGGE-KAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 270 ~~~~-~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
..-. ..++...+.. .+.++...+++
T Consensus 317 any~n~~kC~sv~~~-e~~~~~~~~~~ 342 (361)
T KOG2445|consen 317 ANYNNLWKCTSVLKA-EGSVTKPDFSQ 342 (361)
T ss_pred hhhhhhheeeeEEec-cCCCCCccccc
Confidence 5322 2344444443 33344444444
No 139
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-26 Score=201.67 Aligned_cols=244 Identities=20% Similarity=0.300 Sum_probs=189.0
Q ss_pred eEEEEcCCCCCCCC-eEEEEcCCccE-----------EEecCCCcc-----------cCccEEEEEEcCCCCe----EEE
Q 020107 70 FDIKWSPVGGNAGP-FLAQADADGGL-----------LRDITGEKI-----------SSSMCLCLEWNPSATS----ITV 122 (331)
Q Consensus 70 ~~~~~~~~~~~~~~-~l~~~~~dg~i-----------iw~~~~~~~-----------~~~~v~~~~~~~~~~~----l~~ 122 (331)
..++|+|. +. ++++|..-+.+ ||.+..... .....+.++|.+.+.. |+.
T Consensus 10 a~~awSp~----~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPA----SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCC----CchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeec
Confidence 35689998 43 66666544433 554432211 2466789999997766 888
Q ss_pred EecCCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce
Q 020107 123 GLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV 198 (331)
Q Consensus 123 ~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 198 (331)
|.+||.|.+||... .+...+.....|.+.|..+.|++..++++++|+.||.|.|||+.+.+....... ....+.|
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~-~~~~~eI 164 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS-QAPPSEI 164 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC-CCCcccc
Confidence 88899999999875 233445667789999999999998888999999999999999998654444322 3357789
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--
Q 020107 199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-- 274 (331)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 274 (331)
.+++|+.....+|++++.+|.+.|||+|.. +++.. +..+. ..+..++|+|+....+++++.+++.-++.+|+.+
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~-ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIK-LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCC-Ccccc-cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 999999877889999999999999999985 55444 23333 3478899999988888888888876555555522
Q ss_pred cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
...++++.+|...|.+++|++.++ ++|+|++ .|+.|.+|+.++++.
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~--------~lllSsg-kD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDP--------RLLLSSG-KDNRIICWNPNTGEV 288 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCc--------hhhhccc-CCCCeeEecCCCceE
Confidence 567788899999999999999987 8999999 999999999999753
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=172.29 Aligned_cols=250 Identities=14% Similarity=0.184 Sum_probs=203.9
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
++++++.. ....+.+|.+....... ....-.++|.+++-+|. +.+|+.|+..|.+ +|.+.++..
T Consensus 51 ~yllsaq~---------~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~----G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQL---------KRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNL----GYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecc---------cCccccccccCchhhhh--hhcccccceeeeecCCC----ceEEEeecccCcEEEEEeccccH
Confidence 46677663 56789999988765222 12234578999999999 8999999999999 999999876
Q ss_pred ------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-------cceeeeeeeecccceeEEEeeCCC-CCcEEEEEc
Q 020107 104 ------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-------SQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGS 169 (331)
Q Consensus 104 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~ 169 (331)
|-..|+|+.|+-|+.+|++|+.||.|.+|.+.. ....++..+..|.-+|+++...+. ....+++++
T Consensus 116 L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 116 LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 789999999999999999999999999998754 345678889999999999998863 346899999
Q ss_pred CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC--------------Cceee
Q 020107 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK--------------PVNET 235 (331)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~ 235 (331)
.|.++++||+..+..+..+.. ...+.+++.+| .+..++.|+.+|.|.+.++..... .....
T Consensus 196 ~D~t~k~wdlS~g~LLlti~f----p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITF----PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred CCceEEEEEeccceeeEEEec----CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 999999999999987777765 78899999999 999999999999999998865420 01112
Q ss_pred eeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 236 SVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 236 ~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+.+|.+ +|+|++.+-|+ .++++++.++.+.+|++... ++++++....++|+.+.+.|-.
T Consensus 271 ~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~--Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSK--QCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchH--HHHHHHhhhccccceeEeeccc
Confidence 456777 99999999997 77777778888999999884 7777776567889999886654
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=7.2e-25 Score=165.72 Aligned_cols=211 Identities=18% Similarity=0.235 Sum_probs=167.7
Q ss_pred ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc----------eee---eeeeecccceeEEEeeCCCCCcEEEEE
Q 020107 103 ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ----------LEV---LQQWKAHEFELWATSFDVHQPHMVYTG 168 (331)
Q Consensus 103 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----------~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~ 168 (331)
.|.+.|+++...+ .|+++++|+.||.|.+||++... ..+ ...-.+|...|.++.|-|.+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4566777777766 46777888888888888876521 001 111246888999999999999999999
Q ss_pred cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC--CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI 246 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 246 (331)
+.|.++++||..+.+....|.. .+.|++-+++|.. ..++|+|..|-.|++.|+.++.. ... +.+|...|.++
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~-LsGHr~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHT-LSGHRDGVLAV 194 (397)
T ss_pred cccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eee-eccccCceEEE
Confidence 9999999999999887777775 7789999998842 46788899999999999999643 333 58999999999
Q ss_pred EECCCCCCeEEEEEecCcEEEEEEcCcc-------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 247 KHHPFIPGLVLAACMHNGFAVVKVGGEK-------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
.|+|..+..+++++.|+.+++|+++... ...+++-..|.+.|.+++|..++ .++++++
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~---------~~l~~~g 265 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA---------RYLASCG 265 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc---------hhhhhcc
Confidence 9999986777777889999999998753 11222334678899999999999 7999999
Q ss_pred cCCCeEEEEcCCCccc
Q 020107 314 FYDRLLRIWMPESDCL 329 (331)
Q Consensus 314 ~~d~~i~iW~~~~~~~ 329 (331)
.|..+++|+.++|..
T Consensus 266 -td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 266 -TDDRIRVWNMESGRN 280 (397)
T ss_pred -CccceEEeecccCcc
Confidence 999999999988753
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.4e-22 Score=163.84 Aligned_cols=271 Identities=15% Similarity=0.152 Sum_probs=206.0
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.++.||.|.+.+ -+++|. .+|.|.||+..... ..+... .|.+.|.+++...+ +.+|- |+
T Consensus 247 k~Vl~v~F~eng----dviTgD----------S~G~i~Iw~~~~~~-~~k~~~-aH~ggv~~L~~lr~----GtllS-Gg 305 (626)
T KOG2106|consen 247 KFVLCVTFLENG----DVITGD----------SGGNILIWSKGTNR-ISKQVH-AHDGGVFSLCMLRD----GTLLS-GG 305 (626)
T ss_pred eEEEEEEEcCCC----CEEeec----------CCceEEEEeCCCce-EEeEee-ecCCceEEEEEecC----ccEee-cC
Confidence 356777777765 356665 79999999997765 334443 89999999999988 65555 99
Q ss_pred CCccE-EEecCCCcc----------------------------------------------cCccEEEEEEcCCCCeEEE
Q 020107 90 ADGGL-LRDITGEKI----------------------------------------------SSSMCLCLEWNPSATSITV 122 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~----------------------------------------------~~~~v~~~~~~~~~~~l~~ 122 (331)
.|..+ .|+-.-.+. |......++.+|+.+.+++
T Consensus 306 KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T 385 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT 385 (626)
T ss_pred ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheee
Confidence 99999 887321100 3445678889999999999
Q ss_pred EecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE
Q 020107 123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA 202 (331)
Q Consensus 123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 202 (331)
++.|+.+++|+ ..++ +-... -..++.++.|+| .+ .++.|...|...+.|.++...+..-. ...+++++.
T Consensus 386 ~gqdk~v~lW~--~~k~--~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~ 454 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKL--EWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVR 454 (626)
T ss_pred ccCcceEEEcc--CCce--eEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEe----cCCceEEEE
Confidence 99999999999 3333 22222 355789999999 65 99999999999999999855333332 378999999
Q ss_pred EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--------
Q 020107 203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-------- 274 (331)
Q Consensus 203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 274 (331)
|+| ++.+||.|+.|+.|.+|-+....+........+..+|+.+.|++|+ +++.+.+.+-.+..|......
T Consensus 455 ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDv 532 (626)
T KOG2106|consen 455 YSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSECKQITSVKDV 532 (626)
T ss_pred EcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-ceEEeccCceEEEEEccccCcccceecce
Confidence 999 9999999999999999999887777766556677899999999997 566666555555555221100
Q ss_pred -----------------------------------------------------cceeEEeecCCcceeeeeecCCCCccc
Q 020107 275 -----------------------------------------------------AEVLETYAKHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 275 -----------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~ 301 (331)
......+.+|.+.|++++|.-..
T Consensus 533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d---- 608 (626)
T KOG2106|consen 533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD---- 608 (626)
T ss_pred eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC----
Confidence 12234456899999999999988
Q ss_pred ccccCcEEEEeecCCCeEEEEcC
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
..+++.+ .|..|..|++
T Consensus 609 -----~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 609 -----SHLISTG-KDTSIMQWRL 625 (626)
T ss_pred -----ceEEecC-CCceEEEEEe
Confidence 6888888 8999999986
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=179.11 Aligned_cols=237 Identities=17% Similarity=0.238 Sum_probs=192.6
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-cc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-KI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 134 (331)
..|+.+-+.|+|.|+ +.+|++++.||.+ +|+.... +. +...|.+++. .+..|++|+.+++|.+|..
T Consensus 10 yaht~G~t~i~~d~~----gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD----GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCC----CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 468899999999999 8999999999999 8876554 21 3455666654 5569999999999999999
Q ss_pred cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
..+... ..+..-.-++++++++- ++++++.|+.|-.|++.++........+.. |.++|.++.|+| .+++||+.
T Consensus 84 ps~~~~--~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h~apVl~l~~~p-~~~fLAvs 156 (933)
T KOG1274|consen 84 PSGEED--TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---HDAPVLQLSYDP-KGNFLAVS 156 (933)
T ss_pred CCCCcc--ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecc---cCCceeeeeEcC-CCCEEEEE
Confidence 887543 22333456799999995 899999999999999999998887777777 999999999999 99999999
Q ss_pred ecCCeEEEEEecCCCCCceee-------eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cCC
Q 020107 215 SYDEYLRVWDVRSISKPVNET-------SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KHG 285 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~ 285 (331)
+-||.|++||+.++. ....+ .......+..++|+|++ +.+++.+.++.+++++... .+....++ .+.
T Consensus 157 s~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~--we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKG--WELQFKLRDKLSS 232 (933)
T ss_pred ecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCC--ceeheeecccccc
Confidence 999999999999752 22110 01224567889999998 8888889999988888766 45555555 345
Q ss_pred cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+..+.|+|.| .|||+++ .||.|-|||+++
T Consensus 233 s~~~~~~wsPnG---------~YiAAs~-~~g~I~vWnv~t 263 (933)
T KOG1274|consen 233 SKFSDLQWSPNG---------KYIAAST-LDGQILVWNVDT 263 (933)
T ss_pred cceEEEEEcCCC---------cEEeeec-cCCcEEEEeccc
Confidence 559999999999 7999999 999999999985
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-23 Score=178.02 Aligned_cols=260 Identities=13% Similarity=0.175 Sum_probs=202.4
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+...-..|.|-|.+ ++|.+++ .||.|++|+..........+. .+...|.+++-... .|++
T Consensus 12 ht~G~t~i~~d~~g---efi~tcg----------sdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~------~f~~ 71 (933)
T KOG1274|consen 12 HTGGLTLICYDPDG---EFICTCG----------SDGDIRKWKTNSDEEEPETID-ISGELVSSIACYSN------HFLT 71 (933)
T ss_pred ccCceEEEEEcCCC---CEEEEec----------CCCceEEeecCCcccCCchhh-ccCceeEEEeeccc------ceEE
Confidence 34445677777776 6666665 699999999876632344442 26677888776544 9999
Q ss_pred EcCCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.++.+ .+.....+.+ .-++.+++|+.+|++++.|+.|-.|++.+..+... .+.+++|..+|.++.|+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--~~~lrgh~apVl~l~~~p- 148 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--EKVLRGHDAPVLQLSYDP- 148 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch--heeecccCCceeeeeEcC-
Confidence 9999999 8888776654 56788999999999999999999999999988754 778899999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccC-----CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI-----HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
++++|++.+.||.|++||+.++.....+..... ....+..++|+| ++..|+..+.|+.|++|+...........
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeec
Confidence 889999999999999999998877655544221 145578899999 77777777889999999999874433332
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
...+...+..++|+|.| .++++++.++.|.+|++... . + ......|++++|.|+.+
T Consensus 228 ~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~--~---~-~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTH--E---R-HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccc--h---h-ccccceeEEEecCCCCC
Confidence 23344559999999997 78888889999999998762 1 1 23356899999999874
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.8e-25 Score=187.43 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=192.9
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC------CcccCccEEEEEEc
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG------EKISSSMCLCLEWN 114 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~------~~~~~~~v~~~~~~ 114 (331)
..-.+++|+.... ..|...|.++..-.. .+.+++|+.|-.+ +|.+.. ...|..+|.++.|+
T Consensus 12 ~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s----~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 12 RATKLRVWDTREF--------VAHSAAVGCLKIRKS----SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred eeeccccccchhh--------hhhhhhhceeeeecc----ceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 4556777775543 357778888887555 7899999999998 777654 35589999999999
Q ss_pred CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH 194 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 194 (331)
+...+|++|+.+|+|++||++..+. ++++.+|...+.++.|+| -+.++++|+.|+.+++||++...+...+.. |
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~--vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~ 153 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKI--VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKS---H 153 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhh--hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecC---C
Confidence 9999999999999999999998765 789999999999999999 778889999999999999998777888876 9
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCc
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGE 273 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 273 (331)
...+..+.|+| +|.+++.+++|..+++||+..+ +.+.+ +..|.+.+..+.|+|. ..+++.| .+..+++|++..
T Consensus 154 ~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~ag-k~~~e-f~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dlet- 227 (825)
T KOG0267|consen 154 TRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAG-KLSKE-FKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLET- 227 (825)
T ss_pred cceeEEEeecC-CCceeeccCCcceeeeeccccc-ccccc-cccccccccccccCch--hhhhccCCCCceeeeeccce-
Confidence 99999999999 9999999999999999999885 44444 5779999999999998 5555555 555566666654
Q ss_pred ccceeEEeecCCcceeeeeecCCC
Q 020107 274 KAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 274 ~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
.+.+...+.....|.+.+|+|++
T Consensus 228 -fe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 228 -FEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred -eEEeeccCCccCCceeeeecCCc
Confidence 46666666677899999999998
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-25 Score=188.38 Aligned_cols=222 Identities=19% Similarity=0.281 Sum_probs=187.1
Q ss_pred eEEEEcCCccE-EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 84 FLAQADADGGL-LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+++.....-.+ +|+.+....|...+.++..-..++.+++|+.|..+-+|.+... .++..+.+|+.+|.++.|++ ..
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~-~E 82 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDT-SE 82 (825)
T ss_pred ccceeeeeeccccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCc-ch
Confidence 33334334444 8888888889899999988778889999999999999998754 45777899999999999998 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
.+|++|+.+|+|++||+...+....+.. |...+.++.|+| -+.+++.|+.|+.+++||++.. .+... ...|...
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtg---h~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~-Gc~~~-~~s~~~v 156 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTG---HLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK-GCSHT-YKSHTRV 156 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhc---cccCcceeeecc-ceEEeccccccccceehhhhcc-Cceee-ecCCcce
Confidence 9999999999999999999887777777 999999999999 8899999999999999999974 44444 3669999
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
+..++|+|+| ..+..++.+..+++|+... ++....|..|.+.+..+.|+|.. -++++|| .|++|++|
T Consensus 157 v~~l~lsP~G-r~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~v~sle~hp~e---------~Lla~Gs-~d~tv~f~ 223 (825)
T KOG0267|consen 157 VDVLRLSPDG-RWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGKVQSLEFHPLE---------VLLAPGS-SDRTVRFW 223 (825)
T ss_pred eEEEeecCCC-ceeeccCCcceeeeecccc--cccccccccccccccccccCchh---------hhhccCC-CCceeeee
Confidence 9999999994 3444444557677777766 68899999999999999999997 6899999 99999999
Q ss_pred cCCCc
Q 020107 323 MPESD 327 (331)
Q Consensus 323 ~~~~~ 327 (331)
|+++-
T Consensus 224 dletf 228 (825)
T KOG0267|consen 224 DLETF 228 (825)
T ss_pred cccee
Confidence 99854
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-23 Score=166.50 Aligned_cols=260 Identities=11% Similarity=0.172 Sum_probs=200.9
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+.++.|.... +|++++. ..|..+++|.-......+..+.+.....-.|++.... ..++++|+..
T Consensus 37 ~~s~~w~~~n----~lvvas~--------~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~----S~y~~sgG~~ 100 (673)
T KOG4378|consen 37 DFSFNWQRRN----FLVVASM--------AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ----SLYEISGGQS 100 (673)
T ss_pred ceeeeccccc----eEEEeec--------CCceeEEEecccCCCCccceeeccccchHHHHhhhhc----ceeeeccCcC
Confidence 5566666553 4666652 2688899998665521222222222223344444444 5589999999
Q ss_pred ccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-cceeEEEeeCCCCCc
Q 020107 92 GGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFELWATSFDVHQPH 163 (331)
Q Consensus 92 g~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 163 (331)
+.+ |||+....+ |.+.|+++.++-...+||+++..|.|.|..+.++.. ...|... ...|.-+.|+|....
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEEeecccccce
Confidence 999 999986443 678999999999999999999999999999988754 3444422 455778999998888
Q ss_pred EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 243 (331)
+|.+++.+|.|.+||.........+. ..|..+...|+|+|.++.+|++.+.|..|.+||++.. +.... .....+.
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~--l~y~~Pl 253 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDR--LTYSHPL 253 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccc-cccce--eeecCCc
Confidence 99999999999999998765544443 4599999999999988999999999999999999973 44444 5677889
Q ss_pred EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
..++|.++| .+|+++.+.+.+..|+++.. ..++.+...|...|++++|.|.
T Consensus 254 stvaf~~~G-~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 254 STVAFSECG-TYLCAGNSKGELIAYDMRST-KAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ceeeecCCc-eEEEeecCCceEEEEecccC-CCCceEeeecccceeEEEeeec
Confidence 999999996 66666667888889999887 7888899999999999999987
No 148
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.9e-23 Score=173.51 Aligned_cols=233 Identities=19% Similarity=0.282 Sum_probs=191.3
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEE-EEEcC-CCCeEEEEecC
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLC-LEWNP-SATSITVGLSD 126 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~-~~~~~-~~~~l~~~~~d 126 (331)
+.....+|...|..++..+. ..+++++.||++ +|.-...+. +.+-|.. +++.+ ++-.+++|+.|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-----~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-----VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred eEEEeccCccchheeEecCC-----eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 55667899999999987766 379999999999 998755443 3344444 67765 44459999999
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
++|.+|.+.+. .++..+++|+..|.+++... ++. +++|+-|.++++|-+.. +...++. |+..|.++..-|
T Consensus 81 ~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~l~g---H~asVWAv~~l~- 150 (745)
T KOG0301|consen 81 TTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYSLQG---HTASVWAVASLP- 150 (745)
T ss_pred ceEEEEecCCC--CchhhhhccccceeeeecCC-cCc-eEecccccceEEecchh--hhcccCC---cchheeeeeecC-
Confidence 99999999876 55899999999999999764 444 99999999999998764 3444554 999999999998
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS 286 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 286 (331)
.. .++||+.|.+|++|.-. +.+.. +.+|...|..+++-++ .-+++++.|+.|+.|++. ++.+.++.+|+.
T Consensus 151 e~-~~vTgsaDKtIklWk~~---~~l~t-f~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~---ge~l~~~~ghtn 220 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKGG---TLLKT-FSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD---GEVLLEMHGHTN 220 (745)
T ss_pred CC-cEEeccCcceeeeccCC---chhhh-hccchhheeeeEEecC--CCeEeecCCceEEEEecc---Cceeeeeeccce
Confidence 44 89999999999999764 33443 5789999999999998 678888888888888773 688999999999
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
-|++++...++ +.++|+| +|++++||+..
T Consensus 221 ~vYsis~~~~~---------~~Ivs~g-EDrtlriW~~~ 249 (745)
T KOG0301|consen 221 FVYSISMALSD---------GLIVSTG-EDRTLRIWKKD 249 (745)
T ss_pred EEEEEEecCCC---------CeEEEec-CCceEEEeecC
Confidence 99999966666 6999999 99999999976
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-23 Score=168.18 Aligned_cols=261 Identities=14% Similarity=0.175 Sum_probs=201.7
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC--CccE-EEecCCCc--c------cCccEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA--DGGL-LRDITGEK--I------SSSMCLCL 111 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i-iw~~~~~~--~------~~~~v~~~ 111 (331)
...+++||+...+........-....+.++.|+..+ .|++++. |..+ +|.-.... . ....-.|+
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-----~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-----FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccc-----eEEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 668999999876532222211123349999999873 3555544 4444 77654431 1 12233455
Q ss_pred EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS 191 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 191 (331)
+......++++|+..+.|+|||++.. ...+.+++|...|+++.++- ...+|++++..|.|.|..+.++.....|..
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~- 161 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI- 161 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec-
Confidence 55556689999999999999999954 34677899999999999995 779999999999999999999887777765
Q ss_pred cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
+....|+-+.|+|....+|.+++.+|.|.+||.... .|.......|..+...|+|+|..+.++++.|.|..|.+|++.
T Consensus 162 -~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 162 -DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred -CCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 134567799999977778889999999999999885 677776789999999999999998899999999999999998
Q ss_pred CcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 272 GEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 272 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.. +....+.. ..+.+.++|.++| .+|+.|. ..|.|..||+...
T Consensus 240 s~--~s~~~l~y-~~Plstvaf~~~G---------~~L~aG~-s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQ--ASTDRLTY-SHPLSTVAFSECG---------TYLCAGN-SKGELIAYDMRST 282 (673)
T ss_pred cc--cccceeee-cCCcceeeecCCc---------eEEEeec-CCceEEEEecccC
Confidence 64 33444432 4578899999999 6999998 8999999998654
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-22 Score=168.08 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=196.0
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 134 (331)
....+|.+|+|+.. ...||.+-.+|.+ +|++...-. ....|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEecc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 34578999999999 8899999999999 999987432 36789999999 5567889999999999999
Q ss_pred cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
.+.+. ...+....+.|++++.+| .+..++.|++||.+..++...++....... .-.++.|.+++|+| ++..+++|
T Consensus 98 ~~lk~--~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~rq~sRvLslsw~~-~~~~i~~G 172 (691)
T KOG2048|consen 98 HTLKQ--KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSL-MRQKSRVLSLSWNP-TGTKIAGG 172 (691)
T ss_pred ccCce--eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeec-ccccceEEEEEecC-CccEEEec
Confidence 98754 677777888999999999 778999999999888888776654333322 22578999999999 99999999
Q ss_pred ecCCeEEEEEecCCCCCceee------eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107 215 SYDEYLRVWDVRSISKPVNET------SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
+.||.|++||...+....... ...-..-|+++.|-.+ +.++++-+.+.+.+|+-.. +.+++.+..|...|
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h~adV 248 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIF--GTLIQSHSCHDADV 248 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccC--cchhhhhhhhhcce
Confidence 999999999999864333110 0112335889999877 7888888889888888776 68899999999999
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+++..+++ .+++++| .|+.|..+...++
T Consensus 249 l~Lav~~~~---------d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 249 LALAVADNE---------DRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred eEEEEcCCC---------CeEEEcc-CCCceEEEEecCC
Confidence 999999998 6899999 9999998887665
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=2.4e-22 Score=153.97 Aligned_cols=270 Identities=16% Similarity=0.201 Sum_probs=199.8
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--------c--eEEeEee-ecCcEeEEEEcC----CC
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--------N--LELLYRM-DTAGIFDIKWSP----VG 78 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--------~--~~~~~~~-~~~~v~~~~~~~----~~ 78 (331)
...|+|++ ..|.+-+ .|..+.+|++..... . .....+. ....|..-+|-+ +.
T Consensus 54 gckWSPDG---SciL~~s----------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q 120 (406)
T KOG2919|consen 54 GCKWSPDG---SCILSLS----------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ 120 (406)
T ss_pred cceeCCCC---ceEEeec----------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence 34455554 7777776 799999999864210 0 1111111 234478888763 22
Q ss_pred CCCCCeEEEEcCCccE-EEecCCCccc-----------CccEEEEEEcCCCCeEEEEecCCeEEEEEc-cccceeeeeee
Q 020107 79 GNAGPFLAQADADGGL-LRDITGEKIS-----------SSMCLCLEWNPSATSITVGLSDGSVSIVSV-VESQLEVLQQW 145 (331)
Q Consensus 79 ~~~~~~l~~~~~dg~i-iw~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~ 145 (331)
|. ..++++.+.+.-| +|+.-+++.. -....+++|+|||..|++|.. ..|+++|+ +.++..++...
T Consensus 121 P~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PS-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred Cc-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhh
Confidence 32 6789999999999 9999887752 234568999999999998765 89999999 44543333332
Q ss_pred e-----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCe
Q 020107 146 K-----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEY 219 (331)
Q Consensus 146 ~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~ 219 (331)
. +..+.+.+++|+|.+...++.++....+-||.-........+-. |.+.|+.+.|++ +++.|.+|+ .|..
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~e-dGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCE-DGNKLFSGARKDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEecc-CcCeecccccCCCe
Confidence 2 23678999999998888999999999998988877776666665 999999999999 999999988 4778
Q ss_pred EEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 220 LRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
|..||+|....++.. +..|.+ .-..|.|.-+..+.++++| .++.+++|++.+. +..+..+..|...+..++++|.-
T Consensus 275 Il~WDiR~~~~pv~~-L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYA-LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred EEEEeehhccchhhh-hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccccccccccccceecCccc
Confidence 999999998777776 455555 4456666644445666666 7788889998876 56677788899999999999997
Q ss_pred CcccccccCcEEEEee
Q 020107 298 SSLEGKRKNSLVATCS 313 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~ 313 (331)
.++|+++
T Consensus 353 ---------pilatss 359 (406)
T KOG2919|consen 353 ---------PILATSS 359 (406)
T ss_pred ---------ceeeecc
Confidence 4888876
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=161.61 Aligned_cols=291 Identities=13% Similarity=0.126 Sum_probs=217.1
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc-----ccceEEeEeeecCcEeEEEEcCCCCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE-----EKNLELLYRMDTAGIFDIKWSPVGGN 80 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (331)
..+.+|..||....++..+++||+|+ .|-.+++|+++.. .+++...-..|...|.+++|...
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGG----------DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--- 116 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGG----------DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--- 116 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecC----------CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---
Confidence 33444555554444444459999998 8999999998642 12455554556788999999998
Q ss_pred CCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeeecccc
Q 020107 81 AGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWKAHEF 150 (331)
Q Consensus 81 ~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~ 150 (331)
.+++.+|..++++ +-++.+.+. ..+.|+.+..+|..+.|++.+.++.|.+||.+..... ....+.....
T Consensus 117 -N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 117 -NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred -CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 8899999999999 677766543 3568999999999999999999999999999875411 1111222345
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce-eeeecc---cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK-LAFQNS---KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
....+.|+|..+.+|++.+..+-+-+||++..... ...... +.....-.++.|+| +++.|++--....-.+||+-
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeee
Confidence 67899999988999999999999999999976531 111111 11122346788999 99999888777778899998
Q ss_pred CCCCCceeeeeecC-------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc---------------------ccee
Q 020107 227 SISKPVNETSVCLG-------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK---------------------AEVL 278 (331)
Q Consensus 227 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 278 (331)
+...++.. ..|. ..+.+++|-.+ ..+++++.+-++++|++.... ...+
T Consensus 275 S~R~~V~k--~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 275 SQRCFVLK--SDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred cccceeEe--ccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 86555555 3433 25778888887 567777777789999986532 2345
Q ss_pred EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..+++|...+..+.|+|.. .+|++.| ....++||..-
T Consensus 351 ~VLrGHRSv~NQVRF~~H~---------~~l~SSG-VE~~~KlWS~~ 387 (609)
T KOG4227|consen 351 TVLRGHRSVPNQVRFSQHN---------NLLVSSG-VENSFKLWSDH 387 (609)
T ss_pred EEEecccccccceeecCCc---------ceEeccc-hhhheeccccc
Confidence 6688999999999999998 6999999 99999999864
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=4.8e-23 Score=155.56 Aligned_cols=245 Identities=16% Similarity=0.201 Sum_probs=183.2
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCc----cE-EEecC--CCc-------ccCccEEEEEEcCCCC-----eEEEEecCC
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADG----GL-LRDIT--GEK-------ISSSMCLCLEWNPSAT-----SITVGLSDG 127 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg----~i-iw~~~--~~~-------~~~~~v~~~~~~~~~~-----~l~~~~~dg 127 (331)
-.++++.|+..... ..+||.|+..- .+ +-.+. +.+ .|.-+++.+.|.|+.. +||+. +.
T Consensus 45 ~~lya~~Ws~~~~~-~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDK-KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SD 121 (364)
T ss_pred CceeeeccccCCCc-ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cC
Confidence 45899999954222 56888887533 33 22221 111 2577889999999763 34443 34
Q ss_pred eEEEEEccc--cceeeeeee-----ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---eeeeecccCCCcc
Q 020107 128 SVSIVSVVE--SQLEVLQQW-----KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF---KLAFQNSKIHKMG 197 (331)
Q Consensus 128 ~i~i~d~~~--~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~ 197 (331)
.+|+|.+.. .+..+...+ ..+..++++..|+..+++++.+++-|-+..|||+.++.. ...+.. |...
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA---HDKE 198 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA---HDKE 198 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe---cCcc
Confidence 899999874 332222222 235678999999988999999999999999999998743 334444 9999
Q ss_pred eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-CCceEEEEECCCCCCeEEEEEec-CcEEEEEEcCccc
Q 020107 198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-GGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKA 275 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (331)
|..|+|.....+.||+.+.||.+|+||+|..+........+. ..+...++|++...+++++...+ ..+.+.+++.. .
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-~ 277 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-C 277 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-C
Confidence 999999985567899999999999999998543222212233 56789999999887777666544 56778888887 7
Q ss_pred ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..+.++++|.+.|.+++|.|... ..|.|+| +|.++.+||+...
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~--------~hictaG-DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSS--------SHICTAG-DDCQALIWDLQQM 320 (364)
T ss_pred cceehhhcCcccccceEecCCCC--------ceeeecC-CcceEEEEecccc
Confidence 88899999999999999999987 8999999 9999999999764
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=157.91 Aligned_cols=239 Identities=18% Similarity=0.223 Sum_probs=182.7
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------------cCccEEEEEEc-------CCCCeEE
Q 020107 69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------------SSSMCLCLEWN-------PSATSIT 121 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------------~~~~v~~~~~~-------~~~~~l~ 121 (331)
...+.|+|+ +..|++-+.|..+ +|++..... ....|+..+|- |+..+++
T Consensus 52 ~kgckWSPD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 52 LKGCKWSPD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hccceeCCC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 567899999 9999999999999 888764322 13456666664 5677899
Q ss_pred EEecCCeEEEEEccccceeeeeeeecccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEc-cCCCceeeeec----ccC
Q 020107 122 VGLSDGSVSIVSVVESQLEVLQQWKAHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDI-RESPFKLAFQN----SKI 193 (331)
Q Consensus 122 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~----~~~ 193 (331)
+.+.+.-|.+||.-+++.........|.. ...+++|+| ++..|++|. ...|+++|+ |.++....+.. ..+
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence 99999999999999997744433333443 345899998 888887765 789999999 66654333322 223
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
..+.|.+++|+|.+...++.|+....+-||.-... .|+.. +.+|.+.|+.++|+++++.++..+-.++.|..|+++..
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l-lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL-LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee-ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 46789999999988889999999999999987764 56655 57999999999999999655555557889999999987
Q ss_pred ccceeEEeecCCc-ceee--eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 274 KAEVLETYAKHGS-LAYG--ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 274 ~~~~~~~~~~h~~-~v~~--~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..++..+..|.+ .-.. ++..|++ ++|++|+ .||.|++||+++
T Consensus 284 -~~pv~~L~rhv~~TNQRI~FDld~~~---------~~LasG~-tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 284 -RDPVYALERHVGDTNQRILFDLDPKG---------EILASGD-TDGSVRVWDLKD 328 (406)
T ss_pred -cchhhhhhhhccCccceEEEecCCCC---------ceeeccC-CCccEEEEecCC
Confidence 566666766655 2223 4445666 7999999 999999999987
No 155
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=7.1e-23 Score=169.76 Aligned_cols=247 Identities=18% Similarity=0.238 Sum_probs=183.8
Q ss_pred eEEEEcCCCCCCCCeEEEEcCCccE-EEecCC------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107 70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITG------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 136 (331)
.+..|++.... ..+|+.+.+||.+ +++... ...|...|..+.|.|....|++++.|.++++||+++
T Consensus 53 f~~sFs~~~n~-eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNK-EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCc-cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 45777775433 7899999999999 666543 223789999999999667799999999999999999
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce--ee----------------------eeccc
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LA----------------------FQNSK 192 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~----------------------~~~~~ 192 (331)
.+..-...+.+|...|.+++|.|.+...|++|+.||.|.|||++..... .. .....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8775555688999999999999999999999999999999999854310 00 00011
Q ss_pred CCCcceEE---EEEecCCCCEEEEEec-CCeEEEEEecCCCCCceee------eeec---CCceEEEEECCCCCCeEEEE
Q 020107 193 IHKMGVCC---IASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNET------SVCL---GGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 193 ~~~~~v~~---~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~~~~~~ 259 (331)
++...|.+ +.+.. |...||+++. |+.|++||++......... ...| ...+.++.....| .+++++
T Consensus 212 A~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEE
Confidence 23333443 44444 7888999887 9999999999864322210 1122 2357777877777 788899
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCccee--eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAY--GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
|.|+.|..|++.......+..+.++...-. .-..+|++ .++++|+ .|...++|.+.+-.+
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~---------~~l~SgS-sd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD---------CSLLSGS-SDEQAYIWVVSSPEA 351 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC---------ceEeccC-CCcceeeeeecCccC
Confidence 999999999998877777777776643221 23467887 7999999 999999999987543
No 156
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.92 E-value=2.7e-22 Score=171.27 Aligned_cols=270 Identities=15% Similarity=0.159 Sum_probs=206.7
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------------cCccE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------------SSSMC 108 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------------~~~~v 108 (331)
.++.+.+|++.....+ ...+ .-...|.++.|+|.+ ..+++.|..+|.+ +||+..... |..++
T Consensus 220 ~~~~~~vW~~~~p~~P-e~~~-~~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNTP-ELVL-ESPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred CCceEEEEecCCCCCc-eEEE-ecCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 3458999999987423 3332 345789999999997 4599999999999 999987543 67889
Q ss_pred EEEEEcCCCCe--EEEEecCCeEEEEEcccccee----eeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 109 LCLEWNPSATS--ITVGLSDGSVSIVSVVESQLE----VLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 109 ~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
..+.|..+... +++++.||.|..|+++.-... +..... .....+++++|.+.+++.++.|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 99999775544 999999999999988752110 000011 123468899999989999999999999877
Q ss_pred EEccCCCcee-----eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 177 WDIRESPFKL-----AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 177 ~d~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
-+....+... .......|.++|+++.++|.....+++++ |.+++||.......|+.. +..+...+++++|||.
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~-~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLS-LDSSPDYVTDVAWSPT 452 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchh-hhhccceeeeeEEcCc
Confidence 4433222111 11122348999999999997777888887 999999999854577766 4566777999999999
Q ss_pred CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+..++++..++.+.+|++......++.+.+-+....+.+.|++.+ ++|+.|. ..|.+++|++...+
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g---------~~lavGd-~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG---------KLLAVGD-ANGTTHILKLSESL 519 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC---------cEEEEec-CCCcEEEEEcCchh
Confidence 9888888888999999999887777777776667777888999988 6999999 99999999997543
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.5e-23 Score=156.16 Aligned_cols=215 Identities=12% Similarity=0.110 Sum_probs=162.5
Q ss_pred EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce---eeeeeeecccceeEEEeeCCCCCcEEEEEcCC
Q 020107 95 LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL---EVLQQWKAHEFELWATSFDVHQPHMVYTGSDD 171 (331)
Q Consensus 95 iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (331)
-|++...+.|...|++++|+.+|+.|++++.|++|++|+++.-.. .+++.-. .-+..+.+.|.|+....++++-..
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccC
Confidence 566667777899999999999999999999999999999986221 1111111 122467899999767778888888
Q ss_pred CeEEEEEccCCCc---eee------eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 172 CKFSGWDIRESPF---KLA------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 172 g~i~i~d~~~~~~---~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
.++++|-+...+. ... +...+.|+..+..+-... ++.+|++++.|..|.+|+++. +.+.. .......
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lkG--q~L~~-idtnq~~ 230 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLKG--QLLQS-IDTNQSS 230 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecCC--ceeee-ecccccc
Confidence 8999998764321 111 112233677777777776 889999999999999999993 44444 2344455
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
-+..+.+|+| .++++++..-.+++|.+--.. -..+..++||...|..++|+++. ..++|++ .|
T Consensus 231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S---------~r~vtvS-kD 299 (420)
T KOG2096|consen 231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS---------TRAVTVS-KD 299 (420)
T ss_pred ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc---------ceeEEEe-cC
Confidence 6778999997 777777788888899874321 33466788999999999999998 7999999 99
Q ss_pred CeEEEEcCC
Q 020107 317 RLLRIWMPE 325 (331)
Q Consensus 317 ~~i~iW~~~ 325 (331)
|+++|||.+
T Consensus 300 G~wriwdtd 308 (420)
T KOG2096|consen 300 GKWRIWDTD 308 (420)
T ss_pred CcEEEeecc
Confidence 999999975
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=3.6e-23 Score=158.70 Aligned_cols=255 Identities=14% Similarity=0.211 Sum_probs=191.6
Q ss_pred EeEeeecCcEeEEEEcCCC-CCCCCeEEEEcCCccEEEecCC-----------CcccCccEEEEEEcCC----CCeEEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVG-GNAGPFLAQADADGGLLRDITG-----------EKISSSMCLCLEWNPS----ATSITVG 123 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~~~dg~iiw~~~~-----------~~~~~~~v~~~~~~~~----~~~l~~~ 123 (331)
.+...|+.+|..++|++-. .+....+++++.+...+++... ...+....+.++|+-+ ..++|+|
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3456678899999998531 1114467777766555443322 1225666778888754 4578999
Q ss_pred ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107 124 LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS 203 (331)
Q Consensus 124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 203 (331)
+.-|.|+|.|+.+++. ...+.+|...|+.+.++|.+++++++++.|..|++|++++..++.++-...+|.+.|.++.|
T Consensus 112 G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999998855 78899999999999999998999999999999999999999999999998899999999999
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCC--C------------------------CceeeeeecCCceEEEEECCCCCCeEE
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSIS--K------------------------PVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~--~------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
++ ++.+|++++.|.+|++|++...+ . |.......|...|-|++|-. .+++
T Consensus 190 ~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~il 265 (385)
T KOG1034|consen 190 SL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFIL 265 (385)
T ss_pred cC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hhee
Confidence 99 99999999999999999998321 0 01001234666777777776 4677
Q ss_pred EEEecCcEEEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 258 AACMHNGFAVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 258 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+-+.++.|..|...... ...+.++.-....++-+.|.-|- -+++||.|. ..|.|.+||++
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-------~~~~la~gn-q~g~v~vwdL~ 337 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-------WQKMLALGN-QSGKVYVWDLD 337 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-------HHHHHhhcc-CCCcEEEEECC
Confidence 87888888888873211 12344455555667766665442 127899998 99999999998
Q ss_pred Ccc
Q 020107 326 SDC 328 (331)
Q Consensus 326 ~~~ 328 (331)
+..
T Consensus 338 ~~e 340 (385)
T KOG1034|consen 338 NNE 340 (385)
T ss_pred CCC
Confidence 754
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=156.01 Aligned_cols=276 Identities=18% Similarity=0.201 Sum_probs=195.2
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
..+|++- .+|.|++||..+.+ .+. .++++...++.++|..... ...+.+|+.||.+ +||++....
T Consensus 41 ~~vav~l----------Sngsv~lyd~~tg~-~l~-~fk~~~~~~N~vrf~~~ds--~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSL----------SNGSVRLYDKGTGQ-LLE-EFKGPPATTNGVRFISCDS--PHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEe----------cCCeEEEEeccchh-hhh-eecCCCCcccceEEecCCC--CCeeEEeccCCeEEEEEeecchh
Confidence 4688886 79999999999965 344 4588888999999987421 5689999999999 999987543
Q ss_pred ---------cCccEEEEEEcCCCCeEEEEec----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC
Q 020107 104 ---------SSSMCLCLEWNPSATSITVGLS----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD 170 (331)
Q Consensus 104 ---------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 170 (331)
...+..+++.+-.++.+++|.. +-.|.+||++..+...-.-...|...|+++.|+|.++++|++|+.
T Consensus 107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecc
Confidence 2346677777667788888865 778999999976532223346799999999999999999999999
Q ss_pred CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cCCce------
Q 020107 171 DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LGGGV------ 243 (331)
Q Consensus 171 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v------ 243 (331)
||.|.+||+......-.+...-.|...|.++.|....-+.+.+-+..++..+|++..+...... ..+ ....+
T Consensus 187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~-~~~~~~~~d~r~~~~ 265 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL-ENPDVSADDLRKEDN 265 (376)
T ss_pred cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc-cCccchhhhHHhhhh
Confidence 9999999998654322221112278889999999723346888888999999999886422221 111 01100
Q ss_pred --EEE-EECCCCCCeEEEEEe-cCcEEEEEEcCc----ccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 244 --WRI-KHHPFIPGLVLAACM-HNGFAVVKVGGE----KAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 244 --~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
+-| +.+|.....++.++. .+...++.+... ..+.+..+.+ |...|.++.|...+ .++.|||
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~---------~~l~TGG- 335 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN---------DVLYTGG- 335 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc---------ceeeccC-
Confidence 011 223554456665555 455555555431 1334445555 77788888888776 6999999
Q ss_pred CCCeEEEEcCC
Q 020107 315 YDRLLRIWMPE 325 (331)
Q Consensus 315 ~d~~i~iW~~~ 325 (331)
+||.|.+|..+
T Consensus 336 EDG~l~~Wk~~ 346 (376)
T KOG1188|consen 336 EDGLLQAWKVE 346 (376)
T ss_pred CCceEEEEecC
Confidence 99999999953
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=6e-22 Score=165.74 Aligned_cols=288 Identities=16% Similarity=0.179 Sum_probs=205.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.|+.|.|.+....++++|. .||.|.+|.+......-.....+|...+.++ +.. .....+..
T Consensus 55 a~VnC~~~l~~s~~~a~~vsG~----------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~----~~~~~~~~ 118 (764)
T KOG1063|consen 55 ARVNCVHWLPTSEIVAEMVSGD----------SDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VAR----SSVMTCKA 118 (764)
T ss_pred cceEEEEEcccccccceEEEcc----------CCCcEEEEEEeehheEEEEeecCcceeEEEE--Eee----eeEEEeec
Confidence 3577888888874334888987 8999999999954312222223345555444 443 22444457
Q ss_pred CCccE-EEecCCCcc----------cCccEEEEEEcCCC-C-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 90 ADGGL-LRDITGEKI----------SSSMCLCLEWNPSA-T-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
.|+.+ +|+.+..+. ..-...|+++.++. . .++.|+.+..|.++.-...++..+..+.+|...|.+++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 88888 999965542 11112455555533 3 36777788889998877777777889999999999999
Q ss_pred eCCCCC--cEEEEEcCCCeEEEEEccCCCce---------------------eeee-------cccCCCcceEEEEEecC
Q 020107 157 FDVHQP--HMVYTGSDDCKFSGWDIRESPFK---------------------LAFQ-------NSKIHKMGVCCIASIPS 206 (331)
Q Consensus 157 ~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~---------------------~~~~-------~~~~~~~~v~~~~~~~~ 206 (331)
|....+ -++++++.|..||||.+.-.... ..++ ...+|.+.|+++.|+|
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p- 277 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP- 277 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-
Confidence 986433 57899999999999988643310 0111 1236999999999999
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceee-----eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEE
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNET-----SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLET 280 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 280 (331)
.+..|++++.|.++.+|......-..... ..+..+..+...|+|++ ..+++.+..++.++|.-.+. .......
T Consensus 278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccc
Confidence 88899999999999999887632221110 11224468899999998 78889999999888882221 1234445
Q ss_pred eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 281 YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 281 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..||...|.+++|.|.| .+|+|+| .|.+-|++-.-
T Consensus 357 iSGH~~~V~dv~W~psG---------eflLsvs-~DQTTRlFa~w 391 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSG---------EFLLSVS-LDQTTRLFARW 391 (764)
T ss_pred cccccccceeeeecCCC---------CEEEEec-cccceeeeccc
Confidence 67999999999999999 6999999 99999998654
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=2e-22 Score=167.41 Aligned_cols=122 Identities=18% Similarity=0.311 Sum_probs=105.7
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
...|+.+.|.|++...|++++.||.|++|.+.....+ ....+..|...|+++.|+|-....+++++.+..|++|+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 3458889999999999999999999999999764321 12236789999999999997768888999999999999
Q ss_pred EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+.. ......+.+|++.|.+++|+|+| +.+|+.+ .||+|++|+..++.
T Consensus 707 l~~--~~~~~~l~gHtdqIf~~AWSpdG---------r~~AtVc-KDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 707 LAN--AKLYSRLVGHTDQIFGIAWSPDG---------RRIATVC-KDGTLRVYEPRSRE 753 (1012)
T ss_pred hhh--hhhhheeccCcCceeEEEECCCC---------cceeeee-cCceEEEeCCCCCC
Confidence 998 47777899999999999999999 8999999 99999999998764
No 162
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-21 Score=166.24 Aligned_cols=277 Identities=16% Similarity=0.188 Sum_probs=219.9
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+.+....|+|.. ..+++++ .|+.+++|-.+.+.. .+-....+|..+..+++|.-.+ +..+.
T Consensus 288 ~~sv~~~~fl~~e---pVl~ta~----------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~---g~~il 351 (910)
T KOG1539|consen 288 YGSVTGATFLPGE---PVLVTAG----------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ---GHFIL 351 (910)
T ss_pred cCCcccceecCCC---ceEeecc----------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC---cEEEE
Confidence 4566677777776 4777776 688888887765432 3444567899999999998554 88999
Q ss_pred EEcCCccE-E-----------------------------------------------------------------EecCC
Q 020107 87 QADADGGL-L-----------------------------------------------------------------RDITG 100 (331)
Q Consensus 87 ~~~~dg~i-i-----------------------------------------------------------------w~~~~ 100 (331)
+++.|++. . |+...
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 99999866 1 11110
Q ss_pred Ccc------c------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee---ecccceeEEEeeCCCCCcEE
Q 020107 101 EKI------S------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW---KAHEFELWATSFDVHQPHMV 165 (331)
Q Consensus 101 ~~~------~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l 165 (331)
... + ...+++++.++-|++.+.|+..|.|-+|++.++-. ...+ ..|..+|+.++... -++.+
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~-~n~~~ 508 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDG-TNRLL 508 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee--ecccccCccccCceeEEEecC-CCceE
Confidence 000 1 24678889999999999999999999999998743 4455 57999999999985 67889
Q ss_pred EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE
Q 020107 166 YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR 245 (331)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 245 (331)
++++.+|.+++||..+...+..+.. ...+.++..+. ...+++.+..|-.|+++|..+. +.+.+ +.+|...|+.
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l----~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~-kvvR~-f~gh~nritd 581 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRL----GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTR-KVVRE-FWGHGNRITD 581 (910)
T ss_pred EEccCcceEEEEecCCcceeeeecc----CCCcceeeeee-hhhhhhhhcCceeEEEEEchhh-hhhHH-hhccccceee
Confidence 9999999999999998876666665 67788888888 7889999999999999999984 44444 6889999999
Q ss_pred EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-CeEEEEcC
Q 020107 246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-RLLRIWMP 324 (331)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-~~i~iW~~ 324 (331)
++|||++ ..+++++.|..|++|++.. +.++-.+. -..+++++.|+|++ .+|||+. .| .-|++|.=
T Consensus 582 ~~FS~Dg-rWlisasmD~tIr~wDlpt--~~lID~~~-vd~~~~sls~SPng---------D~LAT~H-vd~~gIylWsN 647 (910)
T KOG1539|consen 582 MTFSPDG-RWLISASMDSTIRTWDLPT--GTLIDGLL-VDSPCTSLSFSPNG---------DFLATVH-VDQNGIYLWSN 647 (910)
T ss_pred eEeCCCC-cEEEEeecCCcEEEEeccC--cceeeeEe-cCCcceeeEECCCC---------CEEEEEE-ecCceEEEEEc
Confidence 9999998 7888899999999999988 46665554 36788999999999 6999999 77 78999964
Q ss_pred C
Q 020107 325 E 325 (331)
Q Consensus 325 ~ 325 (331)
.
T Consensus 648 k 648 (910)
T KOG1539|consen 648 K 648 (910)
T ss_pred h
Confidence 3
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=6.9e-22 Score=149.23 Aligned_cols=249 Identities=17% Similarity=0.198 Sum_probs=178.3
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--------eEEeEeeecCcEeEEEEcCCCCC
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--------LELLYRMDTAGIFDIKWSPVGGN 80 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~ 80 (331)
.|.+..++-+|+.+ .+|++.. ...+. ...--.+.||.+.+...+ +..+...+-+.|.|+.|.|+
T Consensus 63 agEvw~las~P~d~--~ilaT~y-n~~s~--s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--- 134 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQ--RILATVY-NDTSD--SGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN--- 134 (370)
T ss_pred CcceehhhcCCCCC--ceEEEEE-eccCC--CcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC---
Confidence 46778888899886 6777764 32111 001135789998765432 22232334568999999998
Q ss_pred CCCeEEEEcCCccEEEecCCCcc------------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107 81 AGPFLAQADADGGLLRDITGEKI------------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQWK 146 (331)
Q Consensus 81 ~~~~l~~~~~dg~iiw~~~~~~~------------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 146 (331)
+..+++-..+..++|++..... +....++-+|+| +++.+++ ..|+++..||+++.+. ....-.
T Consensus 135 -s~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~d 211 (370)
T KOG1007|consen 135 -SDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIED 211 (370)
T ss_pred -CCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhh
Confidence 8888888755555999876543 244566778998 5665655 4569999999997542 233345
Q ss_pred cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
.|...|..+.|+|+...+|++|++||.|++||.|..+ .+.... ++|...|.++.|+|....++++|+.|..|.+|...
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-cccccc-CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 7888999999999888899999999999999999765 233333 55999999999999888999999999999999764
Q ss_pred CCC-----------------------CCce----eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 227 SIS-----------------------KPVN----ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 227 ~~~-----------------------~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
.-. +|+. +....|...|++++|+...+-.+++-+.|+++.|=++
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 321 1111 1346788999999999988666666666666544333
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-20 Score=138.75 Aligned_cols=264 Identities=16% Similarity=0.235 Sum_probs=192.0
Q ss_pred EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------ce-EEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------NL-ELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
-+++|.. ++|++|. .+|.|.++.++.... +. ....++|.++|+.++|..+ +|+
T Consensus 16 qa~sp~~---~~l~agn----------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~------~Ll 76 (325)
T KOG0649|consen 16 QAISPSK---QYLFAGN----------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD------FLL 76 (325)
T ss_pred HhhCCcc---eEEEEec----------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh------hee
Confidence 3455555 8999998 799999999864211 12 2223789999999999966 777
Q ss_pred EEcCCccE---EEecCCC-----------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107 87 QADADGGL---LRDITGE-----------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK 146 (331)
Q Consensus 87 ~~~~dg~i---iw~~~~~-----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 146 (331)
+|+. |.+ .|+-... ...-..|+++...|..+.++.++.|+.++-||++++++ .+.++
T Consensus 77 s~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r 153 (325)
T KOG0649|consen 77 SGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR 153 (325)
T ss_pred eccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc
Confidence 7765 888 4432211 01234578999999988888888999999999999976 78899
Q ss_pred cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc------C-CCcceEEEEEecCCCCEEEEEecCCe
Q 020107 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK------I-HKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
+|...+.++.--. ....+++|+.||++|+||.++++....+...+ + -...|.+++. +..+|+.|+ ...
T Consensus 154 GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPK 228 (325)
T ss_pred CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCc
Confidence 9999999998753 55779999999999999999998877665422 1 1334667766 457777775 467
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCc
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS 299 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 299 (331)
+.+|.++.. .+... .+..+++..+.|..+ .++++|..+.+.-|.+.. .+...........++..|+...-
T Consensus 229 lslwhLrss-e~t~v--fpipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G---vl~a~ip~~s~~c~s~s~~~~p~- 298 (325)
T KOG0649|consen 229 LSLWHLRSS-ESTCV--FPIPARVHLVDFVDD---CVLIGGEGNHVQSYTLNG---VLQANIPVESTACYSASWQTSPI- 298 (325)
T ss_pred eeEEeccCC-CceEE--EecccceeEeeeecc---eEEEeccccceeeeeecc---EEEEeccCCccceeeecccCCce-
Confidence 999999985 56665 788899999999875 566776667666666653 44444444444566776665542
Q ss_pred ccccccCcEEEEeecCCCeEEEEc
Q 020107 300 LEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 300 ~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
++|-.+| ..+.+.|..
T Consensus 299 -------k~~s~ag-~s~~~~i~~ 314 (325)
T KOG0649|consen 299 -------KFISIAG-FSNKLHILK 314 (325)
T ss_pred -------EEEEecc-cceeeeeee
Confidence 5777777 778887753
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=4.7e-22 Score=167.25 Aligned_cols=240 Identities=18% Similarity=0.142 Sum_probs=195.3
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.+|+.+|.+ +.||+|. .-|.++||++.+.+ .......|...|.++.|+..... .++||+++.
T Consensus 461 G~R~~~vSp~g---qhLAsGD----------r~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~-~kLLASasr 524 (1080)
T KOG1408|consen 461 GFRALAVSPDG---QHLASGD----------RGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLT-NKLLASASR 524 (1080)
T ss_pred ceEEEEECCCc---ceecccC----------ccCceEEEEehhhh--hhhheecccceeEEEeecCchhh-hHhhhhccC
Confidence 45667777666 9999997 89999999999876 44455789999999999965433 678999999
Q ss_pred CccE-EEecCC-------CcccCccEEEEEEcCCC--CeEEEEecCCeEEEEEccc----cceeeeeeeecccceeEEEe
Q 020107 91 DGGL-LRDITG-------EKISSSMCLCLEWNPSA--TSITVGLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 91 dg~i-iw~~~~-------~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~ 156 (331)
|..| ++|+.. ...|...|+++.|.-.| ..+++++.|..|.+ +... +..-+..+-......++.++
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEee
Confidence 9999 888754 33478999999998877 56889999988764 4333 22111111111235789999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
..| ..+++++++.|..|+|||+.+++..+.|+....|.+....+...| .+.|+++.+.|.++.++|+-++ +++.+ .
T Consensus 604 Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sg-EcvA~-m 679 (1080)
T KOG1408|consen 604 VDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSG-ECVAQ-M 679 (1080)
T ss_pred eCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccc-hhhhh-h
Confidence 999 789999999999999999999999999998778888899999999 9999999999999999999996 44544 5
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.+|...|+.+.|.+|- ..+++.++|+.|.+|++..
T Consensus 680 ~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 8999999999999998 6677888899999999865
No 166
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=8.9e-20 Score=150.35 Aligned_cols=254 Identities=13% Similarity=0.163 Sum_probs=173.3
Q ss_pred CcceeEeeecCCCCCcEE-EEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 10 GNADAVEFCPQDSYHHVL-AASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~l-a~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
..+..+.|+|.+ ..+ +++. .++.|++||..+.+ ....+ ..+ ..+..++|+|+ ++.++++
T Consensus 31 ~~~~~l~~~~dg---~~l~~~~~----------~~~~v~~~d~~~~~-~~~~~-~~~-~~~~~~~~~~~----g~~l~~~ 90 (300)
T TIGR03866 31 QRPRGITLSKDG---KLLYVCAS----------DSDTIQVIDLATGE-VIGTL-PSG-PDPELFALHPN----GKILYIA 90 (300)
T ss_pred CCCCceEECCCC---CEEEEEEC----------CCCeEEEEECCCCc-EEEec-cCC-CCccEEEECCC----CCEEEEE
Confidence 345678887765 555 5555 58999999998765 23323 223 33567899999 7766554
Q ss_pred -cCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 -DADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 -~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
..++.+ +|++.+.+.. ...+.+++|+|+++.++++..++ .+.+||.++++. ..... .......++|+|
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~--~~~~~-~~~~~~~~~~s~- 166 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI--VDNVL-VDQRPRFAEFTA- 166 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE--EEEEE-cCCCccEEEECC-
Confidence 567888 9999875431 23467899999999999988765 567789877643 33332 223457899998
Q ss_pred CCcEE-EEEcCCCeEEEEEccCCCceeeeecc--cCC--CcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCcee
Q 020107 161 QPHMV-YTGSDDCKFSGWDIRESPFKLAFQNS--KIH--KMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 161 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~--~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~ 234 (331)
++..+ +++..++.|++||+++++....+... ..+ ......+.|+| +++++++ .+.++.+.+||+++. +....
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 66666 45557999999999988765554421 001 11245688999 8877544 455778999999874 33333
Q ss_pred eeeecCCceEEEEECCCCCCeEEEE-EecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAA-CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
..+...+.+++|+|++ ..++++ +.++.+.+|++.. ++.+.++... ...++++++|
T Consensus 245 --~~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~--~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 245 --LLVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAA--LKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred --EEeCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCC--CcEEEEEEcc-cccceeEeCC
Confidence 3456689999999997 445544 4578899999887 5777777653 5558888765
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=154.56 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=190.0
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEcc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVV 135 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 135 (331)
.++|++|.|+|. ..+|++|+.|+.+ ++.+....- ...+|.+..|.|+|. .+++++....++.||+.
T Consensus 213 ~~~I~sv~FHp~----~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCC----CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 467999999999 8899999999999 888876432 378899999999999 79999999999999999
Q ss_pred ccceeeeeeeeccc-ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 136 ESQLEVLQQWKAHE-FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 136 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
+.+...+....++. ..+.....+| ++++|+..+..|.|.+....+++.+..+.. .+.|..++|+. ++..|+++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsS-dsk~l~~~ 362 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSS-DSKELLAS 362 (514)
T ss_pred ccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEec-CCcEEEEE
Confidence 98877776666654 3567788887 788999999999999999999988888886 88999999998 88999999
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCce--EEEEECCCCCCeEEEEEecCcEEEEEEcCc-------ccceeEEeecCC
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGV--WRIKHHPFIPGLVLAACMHNGFAVVKVGGE-------KAEVLETYAKHG 285 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~h~ 285 (331)
+.+|.|.+||++.. .++.. ....+.| ++++.+++ +.++++|++.+ ++++++. .++++.++..-.
T Consensus 363 ~~~GeV~v~nl~~~-~~~~r--f~D~G~v~gts~~~S~n--g~ylA~GS~~G--iVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-SCLHR--FVDDGSVHGTSLCISLN--GSYLATGSDSG--IVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred cCCceEEEEecCCc-ceEEE--EeecCccceeeeeecCC--CceEEeccCcc--eEEEeccchhhccCCCCchhhhhhhh
Confidence 99999999999985 55555 3344444 55666677 55777777777 5555542 267777887788
Q ss_pred cceeeeeecCCCCcccccccCcEEEEeec-CCCeEEEEcCCC
Q 020107 286 SLAYGADWQRGRSSLEGKRKNSLVATCSF-YDRLLRIWMPES 326 (331)
Q Consensus 286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~d~~i~iW~~~~ 326 (331)
..|+++.|+++. ++||.+|. .+..+|+-.+.+
T Consensus 436 t~Itsl~Fn~d~---------qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 436 TAITSLQFNHDA---------QILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeeeeeeCcch---------hhhhhhhhccccceEEEeccc
Confidence 899999999998 68877763 456777766544
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=8e-21 Score=149.71 Aligned_cols=288 Identities=20% Similarity=0.221 Sum_probs=205.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------ceEEeEeeecCcEeEEEEcCCCCCC
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------NLELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
..++..+.|.+... +.||+|+ .|..|++|.+..... .....+..|..+|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~--~~laT~G----------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~---- 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL--NKLATAG----------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD---- 76 (434)
T ss_pred CCceEEEEeccCcc--cceeccc----------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC----
Confidence 34677888887764 4899998 799999999865431 133345679999999999999
Q ss_pred CCeEEEEcCCccE-EEecC--------C-----C---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc
Q 020107 82 GPFLAQADADGGL-LRDIT--------G-----E---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ 138 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~--------~-----~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 138 (331)
+++||+|+.+|.+ +|... + . ..|...++.++|+|++.++++++-|..+++||+..++
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9999999999999 89776 2 0 0146788999999999999999999999999999986
Q ss_pred eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-----cccC-----------C----Ccce
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-----NSKI-----------H----KMGV 198 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~-----------~----~~~v 198 (331)
. ...+..|...+..++|.| -++++++-+.|...+.+.+...+...... .... | ..-.
T Consensus 157 l--~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 157 L--LAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred e--Eeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 5 777888999999999999 67889998888877777776543322211 0000 1 1224
Q ss_pred EEEEEecCCCCEEEEEec----C-----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCC----------------C
Q 020107 199 CCIASIPSDSNTLLTGSY----D-----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI----------------P 253 (331)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~ 253 (331)
..++|+| ++.++++.+. + ++.++|+-...++|... +.....++..++|+|-. -
T Consensus 234 rRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~-lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 234 RRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR-LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee-cCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence 5677889 8888888642 2 23456665555555554 33444555555555410 0
Q ss_pred CeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 254 GLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+++++....+.+.+|+.... .++.... -|-..+++++|++++ ..++..| .||...+-.++..++
T Consensus 312 rlvfaiAt~~svyvydtq~~--~P~~~v~nihy~~iTDiaws~dg---------~~l~vSS-~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 312 RLVFAIATKNSVYVYDTQTL--EPLAVVDNIHYSAITDIAWSDDG---------SVLLVSS-TDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEEeecceEEEeccccc--cceEEEeeeeeeeecceeecCCC---------cEEEEec-cCCceEEEEEcchhc
Confidence 34556666777777765553 4444433 488899999999999 5888877 899877766655443
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.1e-21 Score=157.85 Aligned_cols=241 Identities=16% Similarity=0.188 Sum_probs=187.6
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCe--EEEEecCCeE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATS--ITVGLSDGSV 129 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~--l~~~~~dg~i 129 (331)
...++++|++.|.+|...|. +.+|++|+.||++ +|.+.++.+. .+.|.|++|+|.+.. ||++.... +
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-V 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-e
Confidence 56778999999999999999 9999999999999 9999999873 678999999997764 44443333 4
Q ss_pred EEEEcccc---------------------------------c--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC---
Q 020107 130 SIVSVVES---------------------------------Q--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--- 171 (331)
Q Consensus 130 ~i~d~~~~---------------------------------~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 171 (331)
.|.+..-+ . ...+.....|...|..+.|+. .+.+|++...+
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGN 545 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCc
Confidence 44432211 0 001122234778899999997 88999887653
Q ss_pred CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
..|.|+++........|+. ..+.|.++.|+| ...+|++++. ..|++||+... ..+.. +......|..++.+|.
T Consensus 546 ~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kq-elvKk-L~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQ-ELVKK-LLTGSKWISSMSIHPN 618 (733)
T ss_pred ceEEEEecccccccCchhh---cCCceeEEEecC-CCceEEEEec-cceEEEehhHH-HHHHH-HhcCCeeeeeeeecCC
Confidence 5789999987776656655 678899999999 7777777764 67999999873 33333 4566778999999998
Q ss_pred CCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
| ..+++++.++.+..+++.-. .++.++++.|...+++++|++.-+ ++++|+ .||++.|+.
T Consensus 619 G-Dnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryP---------Lfas~s-dDgtv~Vfh 678 (733)
T KOG0650|consen 619 G-DNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYP---------LFASGS-DDGTVIVFH 678 (733)
T ss_pred C-CeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccc---------eeeeec-CCCcEEEEe
Confidence 8 56677778888777777655 678889999999999999999994 999999 999999875
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=8.5e-21 Score=145.77 Aligned_cols=291 Identities=14% Similarity=0.214 Sum_probs=207.1
Q ss_pred CcceeEeeecCCCCC--cEEEEEeecccCCCCCCCCCcEEEEeccCcc--cceEEeEee-ecCcEeEEEEcCCCCCCCCe
Q 020107 10 GNADAVEFCPQDSYH--HVLAASTYTLQEGDKPSRNGSISLFNVNAEE--KNLELLYRM-DTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~--~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 84 (331)
.++..++|.++...+ +.+|+.+ ...+.+|+..... ..++..... |....+.++|+-+-..+..+
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG-----------~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVG-----------GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeC-----------CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence 467888888764332 5777775 7889999987654 122222222 55668889998875433668
Q ss_pred EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeee-eeeecccceeEEE
Q 020107 85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVL-QQWKAHEFELWAT 155 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~v~~~ 155 (331)
+|+|+.-|.| +-|+.+.++ |...|+.+.++|+. +++++++.|.+|++|++++.....+ .-+.+|...|.++
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred EEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 9999999999 888887665 67889999999976 5688999999999999998754222 2346899999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCce-------------------------eeeecccCCCcceEEEEEecCCCCE
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFK-------------------------LAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
.|++ ++.+|++++.|..|++|++...+.. +.+.....|...|-|+.| -+++
T Consensus 188 D~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ 263 (385)
T KOG1034|consen 188 DFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDF 263 (385)
T ss_pred EEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---Hhhh
Confidence 9998 8889999999999999999843211 111112336677777777 4689
Q ss_pred EEEEecCCeEEEEEecCCCCCcee------------eeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCcccce
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNE------------TSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKAEV 277 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (331)
+++=+-++.|..|.....++.+.. .+.-....|+-+.|.-+-- ..++++...+.+.+|++....+..
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 999999999999988322221111 1122344566666554322 455556667889999998875544
Q ss_pred eEEeecC--CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 278 LETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 278 ~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..++..+ ...|...+|+.++ .+|+.+. +|++|.-||.-
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dg---------s~lv~vc-dd~~Vwrwdrv 383 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDG---------SILVLVC-DDGTVWRWDRV 383 (385)
T ss_pred CceEEeccccceeeeeeecccC---------cEEEEEe-CCCcEEEEEee
Confidence 4444432 4578899999999 6888887 89999999853
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.9e-20 Score=162.73 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=203.0
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+++..+.++|+.| .++++. ..-.|++||.+.+. .+..+..+ ....|+.+.+-.... ..++++
T Consensus 1065 ~~pk~~~~hpf~p---~i~~ad----------~r~~i~vwd~e~~~-~l~~F~n~~~~~t~Vs~l~liNe~D--~aLlLt 1128 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP---QIAAAD----------DRERIRVWDWEKGR-LLNGFDNGAFPDTRVSDLELINEQD--DALLLT 1128 (1387)
T ss_pred CCCceeeecCCCc---eeEEcC----------CcceEEEEecccCc-eeccccCCCCCCCccceeeeecccc--hhheee
Confidence 3678899999994 666664 57899999998875 33332111 134599999876532 568999
Q ss_pred EcCCccE-EEecCCCc-cc-----------------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-c
Q 020107 88 ADADGGL-LRDITGEK-IS-----------------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-A 147 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~-~~-----------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~ 147 (331)
|+.||.| ||+-.... .. .+.-.-+.|.....+|++++.-..|+|||...... +..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--EeecccC
Confidence 9999999 88654332 10 11113457877777888888889999999987543 33332 3
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--eEEEEEecCCCC-EEEEEecCCeEEEEE
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--VCCIASIPSDSN-TLLTGSYDEYLRVWD 224 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~-~l~~~~~d~~i~iwd 224 (331)
....++++.-+...++.+++|..||.|++||.|...........+.|+.. |..+.+.+ .|. .|++|+.||.|++||
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEe
Confidence 45567888766556899999999999999999986553333333448877 99999988 444 599999999999999
Q ss_pred ecCC-CCCceeeeeec---CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-------cCCcceeeeee
Q 020107 225 VRSI-SKPVNETSVCL---GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-------KHGSLAYGADW 293 (331)
Q Consensus 225 ~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~ 293 (331)
+|.. ...... ...| ++..+++..+++ .-++++|+...++||++... .+..++ ...+.+.+++|
T Consensus 1286 lR~~~~e~~~~-iv~~~~yGs~lTal~VH~h--apiiAsGs~q~ikIy~~~G~---~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1286 LRMSSKETFLT-IVAHWEYGSALTALTVHEH--APIIASGSAQLIKIYSLSGE---QLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred cccCcccccce-eeeccccCccceeeeeccC--CCeeeecCcceEEEEecChh---hhcccccCcccccCcCCCcceeee
Confidence 9983 222222 1222 335999999998 56677776677888887654 333332 23457899999
Q ss_pred cCCCCcccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 294 QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 294 ~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
+|.. -++|.|+ .|.+|.||...+..+.
T Consensus 1360 HP~~---------~llAaG~-~Ds~V~iYs~~k~~~~ 1386 (1387)
T KOG1517|consen 1360 HPHR---------LLLAAGS-ADSTVSIYSCEKPRLT 1386 (1387)
T ss_pred cchh---------Hhhhhcc-CCceEEEeecCCcCCC
Confidence 9997 4777787 9999999998877653
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=6.5e-20 Score=144.24 Aligned_cols=262 Identities=18% Similarity=0.246 Sum_probs=189.8
Q ss_pred EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107 15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG 92 (331)
Q Consensus 15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 92 (331)
-.||..+| .+||+-.. +...|...+.-+....+ .-..+..+|+++|.+++|+|.+ ...||+|++|.
T Consensus 37 S~fcavNP--kfiAvi~e-------asgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~Pfn---D~vIASgSeD~ 104 (472)
T KOG0303|consen 37 SSFCAVNP--KFVAVIIE-------ASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFN---DCVIASGSEDT 104 (472)
T ss_pred ccccccCC--ceEEEEEe-------cCCCcceeecccccccccCCCCCCccCccccccccccCccC---CceeecCCCCc
Confidence 34566666 77777641 11344555555443221 1223457899999999999986 66999999999
Q ss_pred cE-EEecCCCcc-------------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107 93 GL-LRDITGEKI-------------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF 157 (331)
Q Consensus 93 ~i-iw~~~~~~~-------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 157 (331)
++ +|.+..... |...|--++|+|.. +.|++++.|.+|.+|++.+++. +..+. |...|+++.|
T Consensus 105 ~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-hpd~i~S~sf 181 (472)
T KOG0303|consen 105 KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-HPDMVYSMSF 181 (472)
T ss_pred eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecC-CCCeEEEEEe
Confidence 99 999876432 67788899999976 4589999999999999999864 55666 9999999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc-ceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM-GVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~ 233 (331)
+. ++.++++.+.|..|||||.++++.+..-.. |.+ .-..+.|.. ++.++-||- .+..+-+||..+...|+.
T Consensus 182 n~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~---heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 182 NR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVA---HEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred cc-CCceeeeecccceeEEEcCCCCcEeeeccc---ccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcce
Confidence 96 999999999999999999999987666544 543 234455666 777555553 467899999999888877
Q ss_pred eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCC
Q 020107 234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
......+..|.-=-|.|+..-.++++-+|+.|+.|.+.++.+ ..+.+|. ...+-.++.|-|..
T Consensus 257 ~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 257 LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred eEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence 655666777777778888745566666888999999988631 1223333 23344556666653
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=4.7e-20 Score=157.69 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=185.7
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----eEEeEeeecCcEeEEEEcCCCCC
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----LELLYRMDTAGIFDIKWSPVGGN 80 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 80 (331)
.+.....+.|+.|+|++| ++||.|. .+|.|.+||+...... +......|..+++.+.|..+..
T Consensus 238 ~~~~~s~v~~~~f~p~~p--~ll~gG~----------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDP--NLLAGGC----------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred EEecCCceeEEEeccCCc--ceEEeec----------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC-
Confidence 344567889999999998 8999998 5999999999877642 3334455788999999988732
Q ss_pred CCCeEEEEcCCccE-EEecCCCcc------------------cCccEEEEEEcCCC-CeEEEEecCCeEEEEEcccccee
Q 020107 81 AGPFLAQADADGGL-LRDITGEKI------------------SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLE 140 (331)
Q Consensus 81 ~~~~l~~~~~dg~i-iw~~~~~~~------------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 140 (331)
..-+++++.||.+ .|++..... ....+++++|.+.. ..+++|+.+|.|.--.....+..
T Consensus 305 -~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 305 -NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred -CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 2348888889999 887654222 13457889998855 45899999999887444332222
Q ss_pred e------eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 141 V------LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 141 ~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
. ...+..|.++|+++.++|.....+++++ |-+++||... ....+..+.. +...|++++|+|..+..|++
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCceEEEE
Confidence 2 3345668899999999998888888888 9999999987 4444444444 77789999999988899999
Q ss_pred EecCCeEEEEEecCC-CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 214 GSYDEYLRVWDVRSI-SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+..||.|.+||+... ..|+.. ........+.+.|++.+ ..++++...|.+.++++..
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s-~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLS-QKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCCCceehhhhhccccCCccc-ccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence 999999999999764 234444 23345667778888875 5566666667788888854
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=155.70 Aligned_cols=272 Identities=12% Similarity=0.126 Sum_probs=208.9
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..|+|-|++ ..|+.+. +..+.+||..++. +-..+++|.+.|++++|+.+ |+.+|+|+.
T Consensus 14 ci~d~afkPDG---sqL~lAA-----------g~rlliyD~ndG~--llqtLKgHKDtVycVAys~d----GkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDG---TQLILAA-----------GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKD----GKRFASGSA 73 (1081)
T ss_pred chheeEECCCC---ceEEEec-----------CCEEEEEeCCCcc--cccccccccceEEEEEEccC----CceeccCCC
Confidence 45566776666 5666664 7799999999886 44455999999999999999 999999999
Q ss_pred CccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107 91 DGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV 165 (331)
Q Consensus 91 dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (331)
|..+ +|+..-... |...|.|+.|+|-...|++++- ...-+|..+.... ...+ ....+.+++|.. ++.++
T Consensus 74 DK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V---~K~k-ss~R~~~CsWtn-DGqyl 147 (1081)
T KOG1538|consen 74 DKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV---SKHK-SSSRIICCSWTN-DGQYL 147 (1081)
T ss_pred ceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH---Hhhh-hheeEEEeeecC-CCcEE
Confidence 9999 998765443 7899999999999888888876 3456798776432 2222 345788999995 99999
Q ss_pred EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----CEEEEEecCCeEEEEEecCCCCCceeeeeecCC
Q 020107 166 YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS----NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 166 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
+.|-.+|+|.+-+-. ++....+..+.+...+|.+++|+|..+ ..+++.....++.+|.+... ..-.. ...+-
T Consensus 148 alG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~--r~L~F 223 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKD--RALNF 223 (1081)
T ss_pred EEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eeccc--ccCCC
Confidence 999999999988654 333444554455788999999999432 57888888888888888642 21112 34445
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
...++.+.|+| .+++.+|+++.+.++.- .+-.+.++......|+.++..|++ +.++.|. .||+|--
T Consensus 224 dP~CisYf~NG-Ey~LiGGsdk~L~~fTR---~GvrLGTvg~~D~WIWtV~~~PNs---------Q~v~~GC-qDGTiAC 289 (1081)
T KOG1538|consen 224 DPCCISYFTNG-EYILLGGSDKQLSLFTR---DGVRLGTVGEQDSWIWTVQAKPNS---------QYVVVGC-QDGTIAC 289 (1081)
T ss_pred CchhheeccCC-cEEEEccCCCceEEEee---cCeEEeeccccceeEEEEEEccCC---------ceEEEEE-ccCeeeh
Confidence 56789999998 78888888887655543 367788888888899999999999 6888888 9999998
Q ss_pred EcCCC
Q 020107 322 WMPES 326 (331)
Q Consensus 322 W~~~~ 326 (331)
|++..
T Consensus 290 yNl~f 294 (1081)
T KOG1538|consen 290 YNLIF 294 (1081)
T ss_pred hhhHH
Confidence 88743
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=2.7e-20 Score=146.33 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=157.7
Q ss_pred cCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 104 SSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 104 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
|..+|..++|+|.. ..||+|++|.+|.||++..+. .+++..+.+|...|.-++|+|...+.|++++.|.+|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 78999999999955 569999999999999987632 245778899999999999999888999999999999999
Q ss_pred EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeE
Q 020107 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLV 256 (331)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 256 (331)
++.+++....+. |.+.|.++.|+. +|.+|++.+.|..|||||.+++ ..+.+. ..|.+ .-..+.|-.++ .+
T Consensus 160 nv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-~~v~e~-~~heG~k~~Raifl~~g--~i 230 (472)
T KOG0303|consen 160 NVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-TVVSEG-VAHEGAKPARAIFLASG--KI 230 (472)
T ss_pred eccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-cEeeec-ccccCCCcceeEEeccC--ce
Confidence 999997655543 999999999999 9999999999999999999996 555552 56654 45677888884 47
Q ss_pred EEEEec----CcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 257 LAACMH----NGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 257 ~~~~~~----~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+++|.. ..+.+|+..+.+ +-...++.. .+.|.-=-|.++. .++.-+|..|+.||.|.+.+..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt---------~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDT---------SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCC---------CEEEEEecCCcceEEEEecCCC
Confidence 777643 334455544432 222333433 3334434456665 5777776689999999987654
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.6e-20 Score=142.50 Aligned_cols=241 Identities=12% Similarity=0.112 Sum_probs=176.4
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107 69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 141 (331)
-.++.|++. |.+||+|..||.+ |||..+... |-.+|.+++|+++|+.|++++.|..|.+||+..+.+
T Consensus 26 a~~~~Fs~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-- 99 (405)
T KOG1273|consen 26 AECCQFSRW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-- 99 (405)
T ss_pred cceEEeccC----cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--
Confidence 789999999 9999999999999 999988654 788999999999999999999999999999999864
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc-c-CCCcceEEEEEecCCCCEEEEEecCCe
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-K-IHKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
++.+. -..+|+.+.|+|.+.+.+++.-.+..-.+-++..+. ...+..- . .-.....+..|.+ .|+++++|...|.
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGk 176 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGK 176 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccC-CCCEEEEecCcce
Confidence 66666 467999999999877777776666555666665432 1222210 0 0111223345788 9999999999999
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----cc--eeEEeec--CCcceee
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----AE--VLETYAK--HGSLAYG 290 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~--h~~~v~~ 290 (331)
+.++|..+. +.+..........|.++.++..+ ..++..++|..|+.|++.+.. ++ +.+.+.. ....=..
T Consensus 177 llv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 177 LLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999986 55554223334689999999887 788888899989999887421 11 1111110 1112235
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+.|+.++ .+++.++..-..++||.-..|.+
T Consensus 255 ccfs~dg---------eYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 255 CCFSGDG---------EYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred eeecCCc---------cEEEeccccceeEEEEecCCcce
Confidence 6777777 46666654678999999887755
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.4e-20 Score=144.01 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=161.5
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK- 195 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 195 (331)
..+|++...|+|++||..+++. +..++++...+..+.|... .++.+.+|+.||+|++||+|.......+.... +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~-~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ-QSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC-CCC
Confidence 4689999999999999998754 8889999988999998753 57899999999999999999887766666522 43
Q ss_pred cceEEEEEecCCCCEEEEEec----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 196 MGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
.+..+++.+- .++++++|.+ |-.|.+||+|..++++..+...|...|++++|+|..+.++++++.|+-+.++++.
T Consensus 118 ~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 5677787765 6788888863 6789999999987878887889999999999999999999999999988899986
Q ss_pred Ccc-cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 272 GEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 272 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
... ...+...-.|...|-.+.|..++- +.|..-+ ...+..+|+++.+.
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~y--------krI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKY--------KRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCc--------ceEEEEE-ccCceeEEEccCCC
Confidence 642 222333335778899999998875 5677787 89999999998763
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.3e-20 Score=144.10 Aligned_cols=247 Identities=15% Similarity=0.051 Sum_probs=181.8
Q ss_pred EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-------------CcccCccEEEEEEcCCCCeEEEEecCC
Q 020107 62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-------------EKISSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
..+|.+.|+++.|+.+ +++|++|+.|... +|++.. +..|.+.|.|++|......+++|..++
T Consensus 52 ~~~H~GCiNAlqFS~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSHN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhccccceeeeccC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4679999999999999 9999999999999 998753 223678999999999999999999999
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD 207 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (331)
+|...|+++.+...+..-....+.|+.+..+| ..+.|++.+.++.|.+||.+...................++.|+|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999875422222223345899999999 57899999999999999999766322222223356678899999988
Q ss_pred CCEEEEEecCCeEEEEEecCCCCCceeeee--ec---CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 208 SNTLLTGSYDEYLRVWDVRSISKPVNETSV--CL---GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 208 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
+.+|++.+..+-+.+||++....++.+... .. ...-..+.|+|.| ..+++.-....-.++++-.. .-.+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~-R~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQ-RCFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecc-cceeEecc
Confidence 999999999999999999998777665211 11 1223678999998 55555543333345666553 11222222
Q ss_pred c------CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 283 K------HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 283 ~------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
. ....+.++.|..+. .+++|+ .+-.|++|.+..
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~----------~v~tGS-D~~~i~~WklP~ 323 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY----------TVATGS-DHWGIHIWKLPR 323 (609)
T ss_pred CCCCcceeeeeeeeeeeecce----------eeeccC-cccceEEEecCC
Confidence 1 11245677887774 699999 999999999853
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.2e-20 Score=155.41 Aligned_cols=230 Identities=18% Similarity=0.203 Sum_probs=166.8
Q ss_pred CeEEE--EcCCccE-EEecCCCc-c---------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc-----eeeee
Q 020107 83 PFLAQ--ADADGGL-LRDITGEK-I---------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ-----LEVLQ 143 (331)
Q Consensus 83 ~~l~~--~~~dg~i-iw~~~~~~-~---------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~ 143 (331)
..+|+ ++.-|.| |+++.... . ....|+.+.|+| |...|++++.||.|++|.+..+. ..+..
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence 34444 4556777 88887532 2 356789999999 56779999999999999987642 34566
Q ss_pred eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE
Q 020107 144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223 (331)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 223 (331)
.+..|...|+++.|+|-..+.|++++.|-+|++||+++.+....+.. |++.|..++|+| +|+.+++.+.||+|++|
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g---HtdqIf~~AWSp-dGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG---HTDQIFGIAWSP-DGRRIATVCKDGTLRVY 747 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc---CcCceeEEEECC-CCcceeeeecCceEEEe
Confidence 78899999999999998889999999999999999999987777777 999999999999 99999999999999999
Q ss_pred EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc----EEEEEEcCcccceeEEeecCCcceeeeeecCCCCc
Q 020107 224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG----FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS 299 (331)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 299 (331)
..++.++++.+-.......--.|.|..++ .+++++|.+.. +.+|+........+.+ ..++.+|.---
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t--------~~lDvaps~Lv 818 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYT--------QVLDVAPSPLV 818 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhccCCccee--------eeecccCcccc
Confidence 99998888876333344555678888887 67777776543 2223322221222222 22222222111
Q ss_pred ccccc-cCcEEEEeecCCCeEEEEcCCC
Q 020107 300 LEGKR-KNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 300 ~~~~~-~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.+.++ .+-++++|- .|..|.+|.+-.
T Consensus 819 P~YD~Ds~~lfltGK-GD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGK-GDRFVNMYEVIY 845 (1012)
T ss_pred ccccCCCceEEEecC-CCceEEEEEecC
Confidence 11111 225677777 899999998743
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-18 Score=148.86 Aligned_cols=286 Identities=15% Similarity=0.190 Sum_probs=210.9
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC--cccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA--EEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...|++++|.. +++|+|. .||.|.+|.--. ....-..++.-|...|+++.|+++ |.+|++|
T Consensus 207 ~~t~~~~spn~---~~~Aa~d----------~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~----G~~LlSG 269 (792)
T KOG1963|consen 207 NITCVALSPNE---RYLAAGD----------SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD----GAYLLSG 269 (792)
T ss_pred cceeEEecccc---ceEEEec----------cCCcEEEEeccccccccccceEEEecccccceeEEecC----CceEeec
Confidence 46788888887 8999997 799999997544 222344556789999999999999 9999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeee--------cccceeE
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWK--------AHEFELW 153 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~--------~~~~~v~ 153 (331)
+..|.+ +|.+.+++. -.++|..+.++||+.+.++...|..|.+....+...+ .+..+. ....-.+
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 999999 999998775 2788999999999999999999999999887543210 011111 1244567
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc--------CCCcceEEEEEecCCCCEEEEEe--------cC
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK--------IHKMGVCCIASIPSDSNTLLTGS--------YD 217 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~--------~d 217 (331)
.++++| ..+.++-.+..|.|.+||+-+.+.+..+.... .+...+++++.+. .+.+++|.- .|
T Consensus 350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccC
Confidence 788998 66788888999999999999877665544311 1344578888888 699999863 23
Q ss_pred --CeEEEEEecCCCC---CceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcc--------cceeEEeec
Q 020107 218 --EYLRVWDVRSISK---PVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEK--------AEVLETYAK 283 (331)
Q Consensus 218 --~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 283 (331)
-.+++|-.....+ ....+..+|+..+...++.+..+. ..++++.++.+++|-+.+.. ..+...-.-
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 3578897765322 222334578777666666554333 78888899999999994432 222222224
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
|..++++++|+.|| -++++| .|++|.+||..+
T Consensus 508 ~k~~i~a~~fs~dG----------slla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 HKTPITALCFSQDG----------SLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred ccCcccchhhcCCC----------cEEEEe-cCCEEEEecCCC
Confidence 78899999999998 466666 799999999987
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=6.4e-19 Score=135.15 Aligned_cols=233 Identities=14% Similarity=0.139 Sum_probs=171.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc-cceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+-.+++|-+|.++. ..+|++. .+..|.||.....+ ......+..|...|+.+.|+|. ...|+
T Consensus 9 ~~~pitchAwn~dr---t~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~----snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR---TQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK----SNRIV 71 (361)
T ss_pred ccCceeeeeecCCC---ceEEecc----------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCC----CCcee
Confidence 45678888887776 8999997 68899999988776 3445556789999999999999 88999
Q ss_pred EEcCCccE-EEecC-CCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEE
Q 020107 87 QADADGGL-LRDIT-GEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWA 154 (331)
Q Consensus 87 ~~~~dg~i-iw~~~-~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~ 154 (331)
+++.|... +|... .+.- ++..++++.|+|.++.+++|+.-..|.||-++...- .....-+.+...|++
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 99999888 99883 3322 578889999999999999999999999998876321 111122456778999
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEcc-----CCCcee----------eeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIR-----ESPFKL----------AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
++|+| ++-++++|+.|+.++++..- ...... .+.......+.+..+.|+| +++.|+-.+.|.+
T Consensus 152 ldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 152 LDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDST 229 (361)
T ss_pred eeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCc
Confidence 99999 77899999999999998652 111000 0111112577899999999 9999999999999
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
+.+-|.....+.+......+ -+..++.|-.+ ..+++++.+
T Consensus 230 v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise--~~vv~ag~~ 269 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVATAQ-LPLLSVSWISE--NSVVAAGYD 269 (361)
T ss_pred eEEeecCCCchhccchhhcc-CCceeeEeecC--CceeecCCC
Confidence 99999887643333212222 56666666554 344444433
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.3e-17 Score=141.44 Aligned_cols=283 Identities=20% Similarity=0.343 Sum_probs=202.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEE-cCCCCCCCC-eE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKW-SPVGGNAGP-FL 85 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~-~l 85 (331)
....+.++.+.+.+ ..++.++ .++.+.+|+..........+...+...+..+.+ +++ +. .+
T Consensus 64 ~~~~i~~~~~~~~~---~~~~~~~----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 126 (466)
T COG2319 64 HEDSITSIAFSPDG---ELLLSGS----------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD----GNSIL 126 (466)
T ss_pred ccceEEEEEECCCC---cEEEEec----------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC----cceEE
Confidence 34455566666655 6777776 699999999988742233332222236777777 676 55 45
Q ss_pred EEEcC-CccE-EEecCC-C------cccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 86 AQADA-DGGL-LRDITG-E------KISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 86 ~~~~~-dg~i-iw~~~~-~------~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+..+. |+.+ +|+... . ..|...+..++|+|+++.+++++. ++.+++|++..+. .+..+..|...+.++
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~ 204 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSL 204 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEE
Confidence 55444 8888 999886 2 236788999999999998888886 9999999998753 366777799999999
Q ss_pred eeCCCCCc-EEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107 156 SFDVHQPH-MVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 156 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
+|+| ++. .+++++.|+.+++||.+.+.... .+.. |.... ...|+| ++.++++++.|+.+++||++.....+.
T Consensus 205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 9998 555 55665999999999988665554 3444 66665 338999 778889999999999999998644234
Q ss_pred eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe--ecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
.. ..|...+.++.|+|++ ..+++++.++.+.+|+.... ...... ..|...+..+.|.+++. .++.+
T Consensus 279 ~~-~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 346 (466)
T COG2319 279 TL-SGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETG--KLLSSLTLKGHEGPVSSLSFSPDGS--------LLVSG 346 (466)
T ss_pred EE-ecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCC--ceEEEeeecccCCceEEEEECCCCC--------EEEEe
Confidence 32 5778999999999965 56666666655677755543 333333 37777899999933312 34444
Q ss_pred eecCCCeEEEEcCCCcc
Q 020107 312 CSFYDRLLRIWMPESDC 328 (331)
Q Consensus 312 ~~~~d~~i~iW~~~~~~ 328 (331)
+. .|+.+++|++....
T Consensus 347 ~~-~d~~~~~~~~~~~~ 362 (466)
T COG2319 347 GS-DDGTIRLWDLRTGK 362 (466)
T ss_pred ec-CCCcEEeeecCCCc
Confidence 46 78999999987653
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.6e-20 Score=151.82 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=182.2
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------------ccCccEEEEEEcCCCCeEEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------------ISSSMCLCLEWNPSATSITV 122 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------------~~~~~v~~~~~~~~~~~l~~ 122 (331)
++.....|...|++++|.|. ...|++++.||.+ +|+++... .|.++|.|+...+++..+++
T Consensus 286 ik~tl~s~~d~ir~l~~~~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eeeeeecchhhhhhhhcCCC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 44456778899999999999 8899999999999 99994321 27899999999999999999
Q ss_pred EecCCeEEEEEccccc--------eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107 123 GLSDGSVSIVSVVESQ--------LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH 194 (331)
Q Consensus 123 ~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 194 (331)
|+-||+|+.|++.... ......+.+|...++.+++++ ....|++++.||++++|+...... ..+...+ .
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~-e 438 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK-E 438 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCcc-c
Confidence 9999999999654211 122346789999999999997 778899999999999999987654 3344422 2
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-----cCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-----LGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
.+...++++-.......++...-+.--++++.........-... -...+..+.++|.. .+.+++..+..+++++
T Consensus 439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFD 517 (577)
T ss_pred cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccc
Confidence 33445666654122233333222333333333321111110011 11347788999987 7777887888877777
Q ss_pred EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 270 VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
... +..+.....|...++++++.|+++ +|++++ .|+.+++|++...
T Consensus 518 n~~--~~~l~s~~a~~~svtslai~~ng~---------~l~s~s-~d~sv~l~kld~k 563 (577)
T KOG0642|consen 518 NKT--GKILHSMVAHKDSVTSLAIDPNGP---------YLMSGS-HDGSVRLWKLDVK 563 (577)
T ss_pred ccc--cccchheeeccceecceeecCCCc---------eEEeec-CCceeehhhccch
Confidence 666 688888999999999999999994 999999 9999999998654
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=6.6e-19 Score=143.92 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=150.5
Q ss_pred CCeEEEEcCCccE-EEecCC-----CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 82 GPFLAQADADGGL-LRDITG-----EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
.+.|+.++.||.+ +-+-.. -..|...+.+-.|+|+|.-|+++++||.|++|.-.. -+ ..++.....+|+|+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-ML--RStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-ML--RSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hH--HHHHhhcCceeEEE
Confidence 5689999999998 443322 234788899999999999999999999999999653 22 22333456789999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
+|.|+..+.+++.+ +.+.|=-+.....+..++. |.+-|.++.|+| ..+++++|++|-..++||-.. +++..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G--~~Lf~- 222 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA---HDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG--ANLFT- 222 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccceeEEec---cCcEEEEeecCc-cccceeecCCceeEEeecccC--ccccc-
Confidence 99996666666544 5666666665554555665 999999999999 899999999999999999875 34433
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
...|..+|++++|+|+ ..+ +.++.+..+ +. +...+.|..++||+|| ..++.|. .
T Consensus 223 S~~~ey~ITSva~npd--~~~-~v~S~nt~R---~~----------~p~~GSifnlsWS~DG---------TQ~a~gt-~ 276 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE--KDY-LLWSYNTAR---FS----------SPRVGSIFNLSWSADG---------TQATCGT-S 276 (737)
T ss_pred CChhccceeeeeeccc--cce-eeeeeeeee---ec----------CCCccceEEEEEcCCC---------ceeeccc-c
Confidence 3789999999999998 444 334444432 22 2356789999999999 5666666 6
Q ss_pred CCeEEE
Q 020107 316 DRLLRI 321 (331)
Q Consensus 316 d~~i~i 321 (331)
.|.+.+
T Consensus 277 ~G~v~~ 282 (737)
T KOG1524|consen 277 TGQLIV 282 (737)
T ss_pred CceEEE
Confidence 676644
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=6.8e-17 Score=134.73 Aligned_cols=263 Identities=10% Similarity=0.053 Sum_probs=167.3
Q ss_pred CCCcEEEEeccCcccceEEeEee-ecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCC-Ccc-------cCccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITG-EKI-------SSSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~-~~~-------~~~~v~~ 110 (331)
.++.|++|++.+.. .+..+... +.+....++++|+ +++|++++ .++.+ .|++.. +.. .......
T Consensus 10 ~~~~I~~~~~~~~g-~l~~~~~~~~~~~~~~l~~spd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 10 ESQQIHVWNLNHEG-ALTLLQVVDVPGQVQPMVISPD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCCCEEEEEECCCC-ceeeeeEEecCCCCccEEECCC----CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 58999999996432 23322222 3456788999999 88887664 45666 787752 221 1234568
Q ss_pred EEEcCCCCeEEEEec-CCeEEEEEccccc-e-eeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCcee
Q 020107 111 LEWNPSATSITVGLS-DGSVSIVSVVESQ-L-EVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~ 186 (331)
+.|+|+++++++++. ++.|.+|++++.. . ..+..+. +......++++| +++++ ++...++.|.+||+.+.....
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 999999999888775 8999999997422 1 1122222 233467788999 55555 566677999999998633221
Q ss_pred -----eeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCcee--eeeec------CCceEEEEECCCC
Q 020107 187 -----AFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNE--TSVCL------GGGVWRIKHHPFI 252 (331)
Q Consensus 187 -----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--~~~~~------~~~v~~~~~~~~~ 252 (331)
.... + .......+.|+| +++++++... ++.|.+||++.....+.. ....+ ......+.++|++
T Consensus 163 ~~~~~~~~~-~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 163 AQEPAEVTT-V-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccCCCceec-C-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 1111 1 234567899999 8888888776 899999999842111111 01111 1123468899997
Q ss_pred CCeEEEEE-ecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 253 PGLVLAAC-MHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..++++. .++.+.+|++..... +.+..... ......+.++|++ ++|+++...+++|.+|+++
T Consensus 240 -~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg---------~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 -RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSG---------KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCC---------CEEEEEEccCCcEEEEEEc
Confidence 4455553 467788898865422 22222222 1245578999999 4666555259999999874
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=8.5e-19 Score=131.04 Aligned_cols=245 Identities=13% Similarity=0.144 Sum_probs=180.1
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
..+++|.+.|+++.|..+ + +|.+|..-|.+ +|.+++... +...|+.+.--|+ ..+.+-+.|+.+.+
T Consensus 8 fvLRp~~~~v~s~~fqa~----~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQAN----E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eEeccccchheehhhccc----h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 344689999999999876 3 59999999999 999988653 4567777777776 56788888999999
Q ss_pred EEccccceeeeeeee---------------------------------------------------cccceeEEEeeCCC
Q 020107 132 VSVVESQLEVLQQWK---------------------------------------------------AHEFELWATSFDVH 160 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~---------------------------------------------------~~~~~v~~~~~~~~ 160 (331)
|++..+....+..+. +..+.+++..+.-.
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 998752211111100 01234455554322
Q ss_pred C--CcEEEEEcCCCeEEEEEccCCCceeeee-------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--C
Q 020107 161 Q--PHMVYTGSDDCKFSGWDIRESPFKLAFQ-------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--S 229 (331)
Q Consensus 161 ~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~ 229 (331)
. .-++++|.++|.+.+||+.++..+..+. ....|..+|.++.+.+ .-+.=++|+.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCc
Confidence 2 2357788899999999999874322211 1234899999999988 5556678888888999988653 2
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
.++.....-..-.|..+..-||+ ..++++|-|+++++|.... .+++..++.|...|.+++|+|+. .+|
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~---------~lm 308 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDC---------ELM 308 (323)
T ss_pred ccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCC---------chh
Confidence 22222223334568889999997 7888888999999999988 58888899999999999999997 599
Q ss_pred EEeecCCCeEEEEcC
Q 020107 310 ATCSFYDRLLRIWMP 324 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~ 324 (331)
|++| .|++|.+|++
T Consensus 309 Aaas-kD~rISLWkL 322 (323)
T KOG0322|consen 309 AAAS-KDARISLWKL 322 (323)
T ss_pred hhcc-CCceEEeeec
Confidence 9999 9999999986
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=133.59 Aligned_cols=209 Identities=15% Similarity=0.156 Sum_probs=166.4
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-C
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-S 182 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~ 182 (331)
..+|+|.+|++|...+|++.....|.||.....+ +++..++..|...|+.++|+| ..+.|++|+.|..-++|.... +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 4789999999999999999999999999998877 788899999999999999999 778999999999999999943 3
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
+-.+.+.. ..+....+++.|+| .++.||+|+....|.+|-++..+.- -..+..++.+.|+++.|+|++ -++++++
T Consensus 89 ~WkptlvL-lRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs 165 (361)
T KOG1523|consen 89 TWKPTLVL-LRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGS 165 (361)
T ss_pred eeccceeE-EEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccc
Confidence 33333333 22789999999999 9999999999999999988864221 011125778889999999994 4445555
Q ss_pred ecCcEEEEEEcCcc----------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 261 MHNGFAVVKVGGEK----------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 261 ~~~~~~~~~~~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.|...+++...-.. ++++.++....+.|.++.|+|++ ..|+-.+ .|..+.+=|.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG---------~~lawv~-Hds~v~~~da 235 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG---------NRLAWVG-HDSTVSFVDA 235 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC---------CEeeEec-CCCceEEeec
Confidence 67777776643211 44555565567789999999999 6999999 9999998887
Q ss_pred CCc
Q 020107 325 ESD 327 (331)
Q Consensus 325 ~~~ 327 (331)
...
T Consensus 236 ~~p 238 (361)
T KOG1523|consen 236 AGP 238 (361)
T ss_pred CCC
Confidence 654
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.1e-18 Score=124.49 Aligned_cols=227 Identities=14% Similarity=0.132 Sum_probs=160.2
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC----------------CcccCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG----------------EKISSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
.|.+-+|+|. +++|++|+.+|.+ +..+.. .+.|..+++.++|. ..+|++++ ||.|+
T Consensus 12 tvf~qa~sp~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 12 TVFAQAISPS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHhhCCc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEE
Confidence 4677789999 9999999999999 555432 13378899999997 34566655 49999
Q ss_pred EEEccccce----eeeee--eecc-----cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107 131 IVSVVESQL----EVLQQ--WKAH-----EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199 (331)
Q Consensus 131 i~d~~~~~~----~~~~~--~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 199 (331)
-|.-+.... +++-. ...| -..|+++...|.. +-++.++.|+.++-||+++++....++. |++.|.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rG---HtDYvH 160 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRG---HTDYVH 160 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcC---Ccceee
Confidence 998765211 00000 1111 2468899999955 4455555799999999999998888877 999999
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee--------eeec-CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET--------SVCL-GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
++.--. ....+++|++||++|+||.++.+ .+..+ +.+| ...|.+++-+.+ .+.+|....+.+|.+
T Consensus 161 ~vv~R~-~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 161 SVVGRN-ANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGGPKLSLWHL 234 (325)
T ss_pred eeeecc-cCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc----eEEecCCCceeEEec
Confidence 999855 56689999999999999999963 33221 1222 234667776654 445555566789999
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+..+...+..+.+| |..+.|..+ .++++| ..+.|.-|.+..
T Consensus 235 rsse~t~vfpipa~---v~~v~F~~d-----------~vl~~G-~g~~v~~~~l~G 275 (325)
T KOG0649|consen 235 RSSESTCVFPIPAR---VHLVDFVDD-----------CVLIGG-EGNHVQSYTLNG 275 (325)
T ss_pred cCCCceEEEecccc---eeEeeeecc-----------eEEEec-cccceeeeeecc
Confidence 99766666666655 556677665 677777 778888887653
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.4e-18 Score=142.63 Aligned_cols=260 Identities=14% Similarity=0.125 Sum_probs=186.8
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeEeeecCcEeEEEEcCC
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLYRMDTAGIFDIKWSPV 77 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~ 77 (331)
.++++..|..||+-.++++....|++++ .+|.+.+|+++.... .....+++|.++|.|++..+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~s----------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITAS----------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEec----------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC
Confidence 3457788899999888888778999998 899999999933111 133345889999999999999
Q ss_pred CCCCCCeEEEEcCCccE-EEecCCCc----------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee
Q 020107 78 GGNAGPFLAQADADGGL-LRDITGEK----------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE 140 (331)
Q Consensus 78 ~~~~~~~l~~~~~dg~i-iw~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 140 (331)
++.+++|+.||.| .|++.... .|...++.+++++....|++++.||++++|+......
T Consensus 356 ----~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 356 ----GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred ----ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-
Confidence 9999999999999 99765221 1578889999999999999999999999999876543
Q ss_pred eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc----cCCCcceEEEEEecCCCCEEEEEec
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS----KIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
+........+.-.++.+-.......++...-+.-.+++.........+... +.....+..+.++| ...+.+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEeccc
Confidence 111112122334566665423234444444444445555554444433320 00124477888899 8899999999
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
|+.|+++|..++ .++.. ...|...++++++.|++ ..++++..++.+.+|++... .++.....|
T Consensus 510 d~~Ir~~dn~~~-~~l~s-~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k--~~~~es~~~ 572 (577)
T KOG0642|consen 510 DRSIRFFDNKTG-KILHS-MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVK--TCVLESTAH 572 (577)
T ss_pred CCceeccccccc-ccchh-eeeccceecceeecCCC-ceEEeecCCceeehhhccch--heeeccccc
Confidence 999999999996 55555 48899999999999997 67777778888888887663 444444444
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1e-17 Score=143.97 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~ 113 (331)
+..|++||.+... ...+ ..|...+...+|+|+ ++.|+..+.++ .+ +|++.+++. .......++|
T Consensus 183 ~~~i~i~d~dg~~--~~~l-t~~~~~v~~p~wSPD----G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN--QFIV-NRSSQPLMSPAWSPD----GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC--ceEe-ccCCCccccceEcCC----CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeE
Confidence 5789999988764 3333 457778999999999 88888876543 45 899877542 1233457899
Q ss_pred cCCCCeEEEEe-cCCeEEEE--EccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCeEEEEEccCCCceeeee
Q 020107 114 NPSATSITVGL-SDGSVSIV--SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 114 ~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
+|+|+.|+.+. .+|.+.|| |+.+++. ..+..+...+....|+| ++..|+ +...++...||++..........
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 99999888765 57866655 5555543 34455666788999999 566544 55567888888876433222222
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
. +.. ....|+| +++.|+..+.++ +.+||+.++...... .. .....+.|+|++ ..++.++.+++..+|.
T Consensus 332 ~---~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG-~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 332 G---GRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLS--ST--FLDESPSISPNG-IMIIYSSTQGLGKVLQ 399 (429)
T ss_pred c---CCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEec--CC--CCCCCceECCCC-CEEEEEEcCCCceEEE
Confidence 2 333 4578999 999998887765 556999875321111 11 234567899997 6677777788888888
Q ss_pred EcCcccceeEEeecCCcceeeeeecCCC
Q 020107 270 VGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 270 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+....++....+..|.+.+...+|+|-.
T Consensus 400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 400 LVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEECCCCceEEccCCCCCCCCcccCCCC
Confidence 8766688888898888889999999864
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=136.65 Aligned_cols=192 Identities=22% Similarity=0.370 Sum_probs=146.2
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcC
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNP 115 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~ 115 (331)
.||.+.+.+-... ++.....|.++|.+-+|+|+ |.-|+++++||.+ +|.-...- ....+|+|++|.|
T Consensus 83 ~DGkf~il~k~~r---VE~sv~AH~~A~~~gRW~~d----GtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 83 NDGRFVILNKSAR---VERSISAHAAAISSGRWSPD----GAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred CCceEEEecccch---hhhhhhhhhhhhhhcccCCC----CceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 5999999876553 44445789999999999999 9999999999999 99876642 2468899999999
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
+.+.++-+-. +.+.|=-+..+. .+..++.|++-|.++.|++ ..+++++|+.|-..++||... ..+ +.. ..|.
T Consensus 156 ~S~~vl~c~g-~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G-~~L--f~S-~~~e 227 (737)
T KOG1524|consen 156 NSNSIVFCQG-GHISIKPLAANS--KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG-ANL--FTS-AAEE 227 (737)
T ss_pred CCCceEEecC-CeEEEeeccccc--ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccC-ccc--ccC-Chhc
Confidence 9887665544 455555554432 2567889999999999998 779999999999999999764 323 332 4499
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
.+|++++|+| + ..++.++. +++| +..+..+.|..++|++|| ..+.++++.+.+
T Consensus 228 y~ITSva~np-d-~~~~v~S~-nt~R-------------~~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v 280 (737)
T KOG1524|consen 228 YAITSVAFNP-E-KDYLLWSY-NTAR-------------FSSPRVGSIFNLSWSADG-TQATCGTSTGQL 280 (737)
T ss_pred cceeeeeecc-c-cceeeeee-eeee-------------ecCCCccceEEEEEcCCC-ceeeccccCceE
Confidence 9999999999 6 66777764 3344 124567789999999996 455555555554
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=2.6e-18 Score=128.47 Aligned_cols=223 Identities=18% Similarity=0.235 Sum_probs=162.3
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
.+|.+|. ..|.|++|.+.+.. ....+...+...|+.+.--|. ..|.+-+.|+.+ +|++.....
T Consensus 26 ~rL~sg~----------~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~-----d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 26 ERLMSGL----------SVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPN-----DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred hhhhccc----------ccceEEEEEeecCc-cchhhhhhccceeeceeecCC-----cchhhcCCCceEEEEEccCcce
Confidence 4688887 79999999999875 333332256677888888775 267777788887 777654111
Q ss_pred -----------------------------------------------------------cCccEEEEEEcC-CCC--eEE
Q 020107 104 -----------------------------------------------------------SSSMCLCLEWNP-SAT--SIT 121 (331)
Q Consensus 104 -----------------------------------------------------------~~~~v~~~~~~~-~~~--~l~ 121 (331)
..+.+.+..+.. .+. +++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 023345555432 222 477
Q ss_pred EEecCCeEEEEEccccce--------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc----eeeee
Q 020107 122 VGLSDGSVSIVSVVESQL--------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF----KLAFQ 189 (331)
Q Consensus 122 ~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~ 189 (331)
+|.++|.+.+||+.++.. +.......|..+|.++.+.+ .-+.=++|+.+..+..|.+.-... .....
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 888899999999998621 11233456889999999987 445557788888889998874321 11222
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
. ..-.|..+.+-| |++++||++.|+.||+|..++. +|+.. +..|.+.|++++|+|+. +++++++.|..|.+|+
T Consensus 249 l---knpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl-~pLAV-LkyHsagvn~vAfspd~-~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 249 L---KNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTL-NPLAV-LKYHSAGVNAVAFSPDC-ELMAAASKDARISLWK 321 (323)
T ss_pred e---cCCCccceEEcc-CCcEEeecccCCcEEEEEeccC-Cchhh-hhhhhcceeEEEeCCCC-chhhhccCCceEEeee
Confidence 2 345688899999 9999999999999999999996 66665 58899999999999996 7788888888888898
Q ss_pred Ec
Q 020107 270 VG 271 (331)
Q Consensus 270 ~~ 271 (331)
+.
T Consensus 322 LY 323 (323)
T KOG0322|consen 322 LY 323 (323)
T ss_pred cC
Confidence 63
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=5.3e-17 Score=144.60 Aligned_cols=281 Identities=9% Similarity=0.087 Sum_probs=187.4
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeee--cCcEeEEEEcCCCCCCCCeEE
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMD--TAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+..++.++. ++.+|++|+ .||+|++|+..+.... .+.....+ ...+.++...+. ++.+|
T Consensus 1051 v~k~a~s~~--~~s~FvsgS----------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~----~~~~A 1114 (1431)
T KOG1240|consen 1051 VIKLAVSSE--HTSLFVSGS----------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN----GDQFA 1114 (1431)
T ss_pred ccceeecCC--CCceEEEec----------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC----CCeEE
Confidence 334444433 337999998 8999999998764322 22222333 566999999998 88999
Q ss_pred EEcCCccE-EEecCCCcc--------------cCccE-EEEEEcCC-C-CeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 87 QADADGGL-LRDITGEKI--------------SSSMC-LCLEWNPS-A-TSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~--------------~~~~v-~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
+++.||.+ +.++...+. ..+.+ ...+|... . ..++.+...+.|..||++.....-.......
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 99999999 555544111 12223 33344332 2 3688888899999999987432222233344
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC--CEEEEEe--cCCeEEEEE
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS--NTLLTGS--YDEYLRVWD 224 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~d~~i~iwd 224 (331)
.+.|++++.+| .++.+++|+..|.+.+||+|-+..+..+.. + +..+++.+..+|..+ ...++++ ..+.|.+|+
T Consensus 1195 hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~-P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1195 HGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEH-P-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccC-c-ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 56899999999 778999999999999999998877777765 3 558899998888444 4554444 467899999
Q ss_pred ecCCCCCceeeeee-----------c-----CC---ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------
Q 020107 225 VRSISKPVNETSVC-----------L-----GG---GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----------- 274 (331)
Q Consensus 225 ~~~~~~~~~~~~~~-----------~-----~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 274 (331)
+.++.+.... ... - .. .+.+.- +++.+.+++++++.+|+.|+.....
T Consensus 1272 ~~~g~~~~vl-~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~--~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1272 METGLRQTVL-WASDGAPILSYALPSNDARKPDSLAGISCGV--CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred cccCcceEEE-EcCCCCcchhhhcccccCCCCCcccceeeec--ccCCceeeecCCccceeeccCCCcccccccccCccc
Confidence 9886321111 111 0 01 111222 2334889999999999999875422
Q ss_pred -----------------------------------cceeEEe--------ecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 275 -----------------------------------AEVLETY--------AKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 275 -----------------------------------~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
.+..... ..|..+|+++++..... .+|++
T Consensus 1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q--------~llvs 1420 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ--------PLLVS 1420 (1431)
T ss_pred cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc--------cEEEE
Confidence 0000111 14777888888877764 79999
Q ss_pred eecCCCeEEEEc
Q 020107 312 CSFYDRLLRIWM 323 (331)
Q Consensus 312 ~~~~d~~i~iW~ 323 (331)
++ .||.|+||.
T Consensus 1421 ~s-~dG~IkiWk 1431 (1431)
T KOG1240|consen 1421 SS-RDGVIKIWK 1431 (1431)
T ss_pred ec-CCCeeeecC
Confidence 99 999999995
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=9.9e-19 Score=140.39 Aligned_cols=256 Identities=14% Similarity=0.134 Sum_probs=197.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+..++.+.+...+ ..|+.|+ +.|.|-.+|..+.. +... ..-...|.++.|..+ .+++|++
T Consensus 129 eFGPY~~~ytrnG---rhlllgG----------rKGHlAa~Dw~t~~--L~~E-i~v~Etv~Dv~~LHn----eq~~AVA 188 (545)
T KOG1272|consen 129 EFGPYHLDYTRNG---RHLLLGG----------RKGHLAAFDWVTKK--LHFE-INVMETVRDVTFLHN----EQFFAVA 188 (545)
T ss_pred ccCCeeeeecCCc---cEEEecC----------Cccceeeeecccce--eeee-eehhhhhhhhhhhcc----hHHHHhh
Confidence 4566777777766 7788887 79999999998875 3222 112466999999998 7899988
Q ss_pred cCCccEEEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107 89 DADGGLLRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164 (331)
Q Consensus 89 ~~dg~iiw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (331)
...-..++|-...+.| ...|..+.|-|..-+|++++..|.+..-|+.+|+. +..+....+.+..++-+| -+..
T Consensus 189 QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP-~NaV 265 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNP-YNAV 265 (545)
T ss_pred hhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCC-ccce
Confidence 8776668888877765 46788899999988899999999999999999976 777777778899999999 6688
Q ss_pred EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE
Q 020107 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW 244 (331)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 244 (331)
+-+|...|+|.+|.......+..+.. |.++|.+|++.+ +|.+++|.+.|..++|||+|+..++... .. ..+..
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLc---H~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~-~t--p~~a~ 338 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILC---HRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY-RT--PHPAS 338 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHh---cCCCcceEEECC-CCcEEeecccccceeEeeecccccccee-ec--CCCcc
Confidence 99999999999999998887777776 999999999999 9999999999999999999997544433 22 55677
Q ss_pred EEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecC--CcceeeeeecCCC
Q 020107 245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKH--GSLAYGADWQRGR 297 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h--~~~v~~~~~~~~~ 297 (331)
.+++|.. + +++.+..+.+.+|.-.-.. +..-..+..| .+.|.++.|.|-.
T Consensus 339 ~ls~Sqk--g-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 339 NLSLSQK--G-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred ccccccc--c-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 8888876 4 4455566666666532221 1111112223 3489999999975
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=138.89 Aligned_cols=256 Identities=16% Similarity=0.202 Sum_probs=191.5
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCC--CCeEEEEecCCe
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPS--ATSITVGLSDGS 128 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~--~~~l~~~~~dg~ 128 (331)
...+..|.+.|+.|.|+.. +..|++++.|..+ +|+...... |...|....|-|. ...+++.+.||.
T Consensus 135 ~~kL~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3345779999999999999 9999999999999 999877654 5566666678774 356999999999
Q ss_pred EEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEe
Q 020107 129 VSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASI 204 (331)
Q Consensus 129 i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~ 204 (331)
+++=.+.. +..+....+..|.++|..++.-|..++.|.+++.|+.+.-+|+++......+.....+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99987654 333335566779999999999999999999999999999999998876555554343444 67899999
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCCCC-----ceeeee-----ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107 205 PSDSNTLLTGSYDEYLRVWDVRSISKP-----VNETSV-----CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
|.+.+.+++|+.|..+++||.+...+. +..+.. ...-.|++++|+.++ .-++++-.+..|+++.-....
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEecccccc
Confidence 977889999999999999999874322 222111 233469999999877 556666677776666332222
Q ss_pred c----------ceeEE-eecCCc--ceeeeee-cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 275 A----------EVLET-YAKHGS--LAYGADW-QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 275 ~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+ ..+.. ++||.. .|-++-| -|.. .+++||+ +=|.|.||+-.++.+
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGS-DCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGS-DCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecC-ccceEEEEecchhHH
Confidence 2 23333 788876 3555554 3444 7999999 779999999887754
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=8.1e-17 Score=143.48 Aligned_cols=257 Identities=16% Similarity=0.159 Sum_probs=176.5
Q ss_pred EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------------cCccEEEEEEcCCCCeEEEEecCC
Q 020107 62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------------SSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
...|...|..++.++.. +.++++|+.||++ +|+...... ..+.+.++...+.+..+|+++.||
T Consensus 1044 L~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred hhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 35578888899988874 5899999999999 999876433 256778888889999999999999
Q ss_pred eEEEEEcccccee-----eeee--eecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107 128 SVSIVSVVESQLE-----VLQQ--WKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199 (331)
Q Consensus 128 ~i~i~d~~~~~~~-----~~~~--~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 199 (331)
.|++.+++..... ..+. .+.....|..-++...... .++.+..-+.|..||+++......++. +...+.|+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~vT 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLVT 1199 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Ccccccee
Confidence 9999998862111 1111 1112223344455543444 788889999999999998877666665 33567899
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC--CeEEEEEe--cCcEEEEEEcCccc
Q 020107 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP--GLVLAACM--HNGFAVVKVGGEKA 275 (331)
Q Consensus 200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~ 275 (331)
+++.+| .++++++|...|.+.+||+|- +.++.....++..+|..+..+|-.+ ...+++++ .+-+.+|++....
T Consensus 1200 Si~idp-~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~- 1276 (1431)
T KOG1240|consen 1200 SIVIDP-WCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL- 1276 (1431)
T ss_pred EEEecC-CceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-
Confidence 999999 899999999999999999998 4788877778889999999988654 44555444 4556677766532
Q ss_pred ceeEEeecCCcceeeeee-c-------CCC---CcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 276 EVLETYAKHGSLAYGADW-Q-------RGR---SSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 276 ~~~~~~~~h~~~v~~~~~-~-------~~~---~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...++..-. .+..+.+ . |.. ..+.....+.++.+|+ .|..|+.||.....
T Consensus 1277 -~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg-sd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 -RQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG-SDMKIRKWDPTRPE 1337 (1431)
T ss_pred -ceEEEEcCC-CCcchhhhcccccCCCCCcccceeeecccCCceeeecC-CccceeeccCCCcc
Confidence 222221110 0000000 0 000 0000112236899999 89999999987643
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=2.6e-17 Score=134.67 Aligned_cols=199 Identities=16% Similarity=0.232 Sum_probs=138.3
Q ss_pred CCcEEEEeccCccc---ce-EEeEeeecCcEeEEEE--cCCCCCCCCeEEEEcCCccE-EEecCCC----------cccC
Q 020107 43 NGSISLFNVNAEEK---NL-ELLYRMDTAGIFDIKW--SPVGGNAGPFLAQADADGGL-LRDITGE----------KISS 105 (331)
Q Consensus 43 ~g~i~vw~~~~~~~---~~-~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~ 105 (331)
...+++|+...... ++ +.++++. ...+-+| .++.+. +--|..|-.-|.+ +.+.... ...+
T Consensus 143 g~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~-g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~k 219 (636)
T KOG2394|consen 143 GRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPK-GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINK 219 (636)
T ss_pred CCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCC-CcceEEeeccCceEEecchhhHHHHhhhhcccccc
Confidence 55788888774321 11 1222222 2233334 222222 5567777777777 2222221 1246
Q ss_pred ccEEEEEEcCCCC-eEEEEecCCeEEEEEcccc--------------c------------eeeeeeeecccceeEEEeeC
Q 020107 106 SMCLCLEWNPSAT-SITVGLSDGSVSIVSVVES--------------Q------------LEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 106 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--------------~------------~~~~~~~~~~~~~v~~~~~~ 158 (331)
..|+|+.|-|.++ .++++-.+|.+.+||.+-. . ..++..+.-....|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 8899999999655 4666677999999976420 0 01222333345678899999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
| ++.+|++.+.||.+||+|..+.+....++. .-+...|++|+| |+++|++|++|.-|.||.+... +.+.. -.+
T Consensus 300 ~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~er-RVVAR-GqG 372 (636)
T KOG2394|consen 300 P-DGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEER-RVVAR-GQG 372 (636)
T ss_pred C-CCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcC-CccEEEecCCcceEEEEEeccc-eEEEe-ccc
Confidence 9 999999999999999999998776666655 567899999999 9999999999999999999873 33333 689
Q ss_pred cCCceEEEEECCC
Q 020107 239 LGGGVWRIKHHPF 251 (331)
Q Consensus 239 ~~~~v~~~~~~~~ 251 (331)
|...|..++|.|-
T Consensus 373 HkSWVs~VaFDpy 385 (636)
T KOG2394|consen 373 HKSWVSVVAFDPY 385 (636)
T ss_pred cccceeeEeeccc
Confidence 9999999999983
No 198
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=6.4e-15 Score=127.17 Aligned_cols=275 Identities=21% Similarity=0.384 Sum_probs=199.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCC-CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eEEEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSR-NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQA 88 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~-~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~ 88 (331)
.+..+.|+|.+ .+++.+. . ++.+++|++.... .......|...|.+++|+|+ +. .++++
T Consensus 157 ~v~~~~~~~~~---~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~ 217 (466)
T COG2319 157 SVTSLAFSPDG---KLLASGS----------SLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPD----GGLLIASG 217 (466)
T ss_pred cEEEEEECCCC---CEEEecC----------CCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcCC----cceEEEEe
Confidence 44566677766 6777775 4 9999999999743 33444668999999999988 66 55555
Q ss_pred cCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 DADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
+.|+.+ +|+...... |.... ...|++++..+++++.|+.+++|+...... ....+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~- 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP- 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-
Confidence 999999 897763322 22332 227999998889999999999999987543 2333367888999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCceeeeeec
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
.+..+++++.|+.+++||.++........ ...|...+..+.+ +.++..++.+ ..|+.+.+|++.... .... ...
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~--~~~ 369 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKT--LEG 369 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEE--ecC
Confidence 66777778888899999998876555554 1237778999999 5243555555 688999999999864 2222 233
Q ss_pred CCceEEEEECCCCCCeEEE-EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 240 GGGVWRIKHHPFIPGLVLA-ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
...+..+.+.+ . ...+. ...++.+.+|+.... ........+...+....+.+++ ..+++++ .++.
T Consensus 370 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~ 435 (466)
T COG2319 370 HSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG--SLLRNLDGHTSRVTSLDFSPDG---------KSLASGS-SDNT 435 (466)
T ss_pred CceEEEEEECC-C-CCEEEEecCCCceEEEecccC--eeeeeccCCCCcEEEEEECCCC---------cEEEEec-CCCc
Confidence 33389999999 6 66666 556677778887763 3333333332788889999998 5888888 8999
Q ss_pred EEEEcCCC
Q 020107 319 LRIWMPES 326 (331)
Q Consensus 319 i~iW~~~~ 326 (331)
+++|+..+
T Consensus 436 ~~~~~~~~ 443 (466)
T COG2319 436 IRLWDLKT 443 (466)
T ss_pred EEEEeccC
Confidence 99999876
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=140.33 Aligned_cols=212 Identities=20% Similarity=0.266 Sum_probs=158.1
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcC--CCCeEEEEecCC
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNP--SATSITVGLSDG 127 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg 127 (331)
++..+.+|++.|++++|+.+ |.+|++|+.|-.+ +||....+. |...|.++.|-| +.+.+++|..|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNAD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhhccccceecceeecCC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 33455899999999999999 9999999999999 999876543 678899999998 445789999999
Q ss_pred eEEEEEccc--------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee-------eeeccc
Q 020107 128 SVSIVSVVE--------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL-------AFQNSK 192 (331)
Q Consensus 128 ~i~i~d~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~ 192 (331)
.|+++|+.. +-......+..|...|..++-.|..++.+.+++.||+|+-+|+|...... .+....
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 999999985 12234556678999999999999777999999999999999999754211 111111
Q ss_pred CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-----------------ceeeeeecC-----------CceE
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-----------------VNETSVCLG-----------GGVW 244 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------~~~~~~~~~-----------~~v~ 244 (331)
..--...++.++|.+..+|++|+.|-..++||.|...++ +..+...|. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 123457899999988999999999999999996542211 111111221 1256
Q ss_pred EEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107 245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
-++|+|+|..+|+. -+...++++++...+
T Consensus 278 ~vtfnpNGtElLvs-~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 278 YVTFNPNGTELLVS-WGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEECCCCcEEEEe-eCCeEEEEEeecCCC
Confidence 68999998555544 445667788887753
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.4e-15 Score=117.88 Aligned_cols=229 Identities=16% Similarity=0.185 Sum_probs=159.4
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG 93 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 93 (331)
.+.+.-++.+...|..|+ .+| .++|+.....+.... ......|-.+-|+.. ++|..+.+..
T Consensus 7 ti~~~~~Nqd~~~lsvGs----------~~G-yk~~~~~~~~k~~~~--~~~~~~IvEmLFSSS------LvaiV~~~qp 67 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGS----------KDG-YKIFSCSPFEKCFSK--DTEGVSIVEMLFSSS------LVAIVSIKQP 67 (391)
T ss_pred ceeeeeeccceeEEEccC----------CCc-eeEEecCchHHhhcc--cCCCeEEEEeecccc------eeEEEecCCC
Confidence 344444555557899998 454 788888876521111 111234777888877 7776665333
Q ss_pred --E-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCCCC
Q 020107 94 --L-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVHQP 162 (331)
Q Consensus 94 --i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 162 (331)
+ +.+...... -+.+|.++.++. +.|++.-.+ .|+|||+++.++ +.++. .+...+.++.+++ .+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~-~n 141 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNN-AN 141 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEeccccee--ehhhhccCCCccceEeeccCC-CC
Confidence 2 555544322 256788888754 567666664 499999998754 55443 3455566666665 44
Q ss_pred cEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-EEEEEecCCCCCceeeeee-
Q 020107 163 HMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-LRVWDVRSISKPVNETSVC- 238 (331)
Q Consensus 163 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~- 238 (331)
.+++--+ ..|.|.+||..+-+....+.. |.+.+.+++|++ +|.+|||+++.|+ ||+|.+.++ +.+.++..+
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a---H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~ 216 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINA---HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGT 216 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEe---cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCc
Confidence 5666533 468999999998877777776 999999999999 9999999999886 789999886 444442222
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
....|.+++|+|++ .++.+++..+.++++++...
T Consensus 217 ~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence 24568999999997 68888888899999999763
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=7.1e-19 Score=150.63 Aligned_cols=236 Identities=16% Similarity=0.148 Sum_probs=181.8
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
.+|..+|+|+.|... +.++++|+.|..+ ||...+..+ |.+.|+.++.+.+.-++++++.|..|++|.+.
T Consensus 187 lgH~naVyca~fDrt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT----GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred Hhhhhheeeeeeccc----cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 578899999999999 9999999999999 999877654 78899999999888889999999999999999
Q ss_pred ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee-ecccCCCcceEEEEEecCCCCEEEEE
Q 020107 136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF-QNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
.+. ++..+.+|++.|++++|+| ..+.+.||++++||.+-...+..- .........+.++.|.. .+.-++|+
T Consensus 263 ~~~--pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tg 334 (1113)
T KOG0644|consen 263 DGA--PVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTG 334 (1113)
T ss_pred CCc--hHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccc
Confidence 884 4888999999999999999 237889999999999821111110 00011245677888877 88899999
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
+.|+.-..|.+.... .+...+.-+.++.+-....+++-.+-.+.+|++.. +.+...+.+|...++.+.++
T Consensus 335 s~d~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~--g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT--GQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cCCcccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeeccc--chhhhhhcccccceeeeeec
Confidence 999998888776421 11111222222223224445555555556777766 68888889999999999999
Q ss_pred CCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
|-++ +...+++ .||...|||+-.+..
T Consensus 405 pfn~--------ri~msag-~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 405 PFNP--------RIAMSAG-YDGSTIIWDIWEGIP 430 (1113)
T ss_pred CCCc--------Hhhhhcc-CCCceEeeecccCCc
Confidence 9997 8888999 999999999987754
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=2.1e-17 Score=138.79 Aligned_cols=232 Identities=14% Similarity=0.250 Sum_probs=176.4
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.++||+|+.++ .++|+|+ .|..|.+|+.+-.. .+.-.|.+.|.||.|+|- ...|++++-
T Consensus 55 tVycVAys~dG---krFASG~----------aDK~VI~W~~klEG----~LkYSH~D~IQCMsFNP~----~h~LasCsL 113 (1081)
T KOG1538|consen 55 TVYCVAYAKDG---KRFASGS----------ADKSVIIWTSKLEG----ILKYSHNDAIQCMSFNPI----THQLASCSL 113 (1081)
T ss_pred eEEEEEEccCC---ceeccCC----------CceeEEEecccccc----eeeeccCCeeeEeecCch----HHHhhhcch
Confidence 45677777666 8999998 89999999876543 334469999999999999 889999987
Q ss_pred CccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC----
Q 020107 91 DGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP---- 162 (331)
Q Consensus 91 dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 162 (331)
+..-+|....... ....+.+.+|..||++++.|-.+|+|.+-+........+..--+...+|.+++|+|..+
T Consensus 114 sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 114 SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 6666998876544 35678899999999999999999999998755433222333335678999999998542
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
..+++..-..++..+.+.... +..-.. -.-...|+.+.| +|.+++.|+.|+.+++|--+. ..+-+ .......
T Consensus 194 di~aV~DW~qTLSFy~LsG~~-Igk~r~---L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~G--vrLGT-vg~~D~W 265 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSGKQ-IGKDRA---LNFDPCCISYFT-NGEYILLGGSDKQLSLFTRDG--VRLGT-VGEQDSW 265 (1081)
T ss_pred ceEEEEeccceeEEEEeccee-eccccc---CCCCchhheecc-CCcEEEEccCCCceEEEeecC--eEEee-cccccee
Confidence 467777777888888876432 221111 345678999999 999999999999999996543 22333 3457789
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
|+.++..|++ +.++.+|.|+++..+++-.
T Consensus 266 IWtV~~~PNs-Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 266 IWTVQAKPNS-QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence 9999999998 7888889999988877643
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=126.60 Aligned_cols=271 Identities=17% Similarity=0.226 Sum_probs=179.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAG-PFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~ 89 (331)
.+.-|.|..++ .++.++.| .++.|.+|++...+ -...+ .....++.+++|||+ + .+|.+..
T Consensus 50 ki~yieW~ads---~~ilC~~y---------k~~~vqvwsl~Qpe-w~ckI-deg~agls~~~WSPd----grhiL~tse 111 (447)
T KOG4497|consen 50 KIVYIEWKADS---CHILCVAY---------KDPKVQVWSLVQPE-WYCKI-DEGQAGLSSISWSPD----GRHILLTSE 111 (447)
T ss_pred Hhhheeeeccc---eeeeeeee---------ccceEEEEEeecce-eEEEe-ccCCCcceeeeECCC----cceEeeeec
Confidence 34556777665 67777765 69999999998865 22223 334567999999999 6 5677777
Q ss_pred CCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.+-.+ +|.+.+.+. .+..+..++|+|+|++.+..+.-.....+.+.. ..+..++.++...-..+.+.|+| ++
T Consensus 112 F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg 190 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DG 190 (447)
T ss_pred ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CC
Confidence 78888 999988765 356678999999999988887732222222221 22334555665666788999999 66
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-------------
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS------------- 229 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------- 229 (331)
+.++ +||.--.-.+..+. ..-++..+.|+| .+++|++|+.|+.+|+.+--+.+
T Consensus 191 ~~la---------Vwd~~Leykv~aYe----~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 191 NWLA---------VWDNVLEYKVYAYE----RGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred cEEE---------Eecchhhheeeeee----eccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 6655 57654322222222 246799999999 99999999999999886532211
Q ss_pred -----------C---------------------------------Ccee-e------eeecCCceEEEEECCCCCCeEEE
Q 020107 230 -----------K---------------------------------PVNE-T------SVCLGGGVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 230 -----------~---------------------------------~~~~-~------~~~~~~~v~~~~~~~~~~~~~~~ 258 (331)
. ++.. . +......+-.++|++| ..+++
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D--s~y~a 334 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD--STYAA 334 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC--ceEEe
Confidence 0 0000 0 0001124667999999 67777
Q ss_pred EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+-.++--....+|+.+...+...-....+|....|.|..+ ++++ +. ....+++|.+.-
T Consensus 335 Trnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p--------rL~v-ct-g~srLY~W~psg 392 (447)
T KOG4497|consen 335 TRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP--------RLVV-CT-GKSRLYFWAPSG 392 (447)
T ss_pred eecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc--------eEEE-Ec-CCceEEEEcCCC
Confidence 7666543445555543344444445677899999999996 4444 44 367799998754
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=135.27 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=207.2
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.|..|..||.-..++..|..|++|+ .|..|.+||..... +...+..+|...|..-.|.|... ..-++
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgS----------DD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~--d~ti~ 203 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGS----------DDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSG--DRTIV 203 (559)
T ss_pred cccCCCCccceeeecccCceeeccC----------ccceEEeehhhccC-cccccccccccchhhhhccCCCC--CcCce
Confidence 4566666666666666669999998 89999999998877 44455588999999999999743 45799
Q ss_pred EEcCCccE-EEe---------cCCCcccCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeec-ccc---e
Q 020107 87 QADADGGL-LRD---------ITGEKISSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKA-HEF---E 151 (331)
Q Consensus 87 ~~~~dg~i-iw~---------~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~---~ 151 (331)
+++.||.+ +-. ......|.++|.-++.-|+..+ |.+++.|+.+.-+|++.+........+. +.. .
T Consensus 204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 99999999 222 2223347889999999997765 8999999999999999865433322222 233 5
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce------eeeec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK------LAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
...++.+|.+.+.+++++.|..+++||.+.-... ..+.. .......|+++.|+. ++.-|++.-.|-.|++
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYL 362 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEE
Confidence 7789999988889999999999999999864322 11111 001245699999997 6666777777888999
Q ss_pred EEecCCCC--C---------ceeeeeecC--CceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcce
Q 020107 223 WDVRSISK--P---------VNETSVCLG--GGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 223 wd~~~~~~--~---------~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
+.-....- | +.....+|. ..|..+-|-.-. .-++++|+| +.|.+|+- ..++.++.+.+-...|
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-sEyVvSGSDCGhIFiW~K--~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-SEYVVSGSDCGHIFIWDK--KTGEIIRFMEGDRHVV 439 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc-cceEEecCccceEEEEec--chhHHHHHhhcccceE
Confidence 95433211 1 111134553 347777765422 345555555 44444443 3367777777766699
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.++.=+|..| +||++| -|.-|+||.+.+
T Consensus 440 NCLEpHP~~P---------vLAsSG-id~DVKIWTP~~ 467 (559)
T KOG1334|consen 440 NCLEPHPHLP---------VLASSG-IDHDVKIWTPLT 467 (559)
T ss_pred eccCCCCCCc---------hhhccC-CccceeeecCCc
Confidence 9999999995 999999 999999999843
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.7e-16 Score=120.09 Aligned_cols=221 Identities=13% Similarity=0.074 Sum_probs=156.1
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
...++|++.- ..+|++. .|-.|++|+-.... ...+....+..|++++|-|.. ++.|++|...
T Consensus 101 lr~~aWhqH~---~~fava~----------nddvVriy~ksst~--pt~Lks~sQrnvtclawRPls---aselavgCr~ 162 (445)
T KOG2139|consen 101 LRGVAWHQHI---IAFAVAT----------NDDVVRIYDKSSTC--PTKLKSVSQRNVTCLAWRPLS---ASELAVGCRA 162 (445)
T ss_pred eeeEeechhh---hhhhhhc----------cCcEEEEeccCCCC--CceecchhhcceeEEEeccCC---cceeeeeecc
Confidence 4566777754 6788887 69999999987742 334434456779999999986 6789999999
Q ss_pred ccEEEecCCCcc-------------------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccce
Q 020107 92 GGLLRDITGEKI-------------------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFE 151 (331)
Q Consensus 92 g~iiw~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~ 151 (331)
|..+|.....-. ...+|+++.|++||..+++++. |..|.|||..++...++... ..+.
T Consensus 163 gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg 240 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGG 240 (445)
T ss_pred eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCc
Confidence 988887643110 1467999999999999999887 78999999999876555522 3557
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
+.-+.|+| ++++|++++-|+..++|......-...+.. ..+.|...+|+| .|.+|+.... |.-++|.+.-..++
T Consensus 241 ~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~l---gsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 241 FSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWIL---GSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGED 314 (445)
T ss_pred eeeEEEcC-CCCEEEEecccceeeeehhcccceecceec---cCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCC
Confidence 88999999 889999999999999996554433333444 456899999999 7766554432 34455555432221
Q ss_pred ceee----------------------eeecCCceEEEEECCCCCCeEEEE
Q 020107 232 VNET----------------------SVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 232 ~~~~----------------------~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.... ..-..+++.+++|.|.| .++++.
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~ 363 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVI 363 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEE
Confidence 1110 01124678999999997 444433
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.7e-16 Score=129.79 Aligned_cols=280 Identities=12% Similarity=0.101 Sum_probs=194.2
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec--CcEeEEEEcCCCCCCCCe
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT--AGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 84 (331)
.+......|..+|++. -++|+|.| ...|++||+.... ++. ..|. ..|.-.-.+.+ -..
T Consensus 49 e~p~ast~ik~s~DGq--Y~lAtG~Y----------KP~ikvydlanLS--LKF--ERhlDae~V~feiLsDD----~SK 108 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQ--YLLATGTY----------KPQIKVYDLANLS--LKF--ERHLDAEVVDFEILSDD----YSK 108 (703)
T ss_pred CCccccceeEecCCCc--EEEEeccc----------CCceEEEEcccce--eee--eecccccceeEEEeccc----hhh
Confidence 4455667888888884 57888886 8899999999864 332 3443 33444445555 556
Q ss_pred EEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 85 LAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 85 l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.-..|..|-+....+.. .+.....++++.-.--|++++....|+-++++.|++ +..+......++++..++
T Consensus 109 ~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~- 185 (703)
T KOG2321|consen 109 SVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINE- 185 (703)
T ss_pred heEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecC-
Confidence 6666677777222111111 123344566655444466666667888899999976 677776678899999998
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCc-----ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKM-----GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV 232 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 232 (331)
-..+|++|+.+|.|..||.|.......+... ..|.. .|+++.|+. ++-.+++|..+|.+.|||++. .+|+
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa-~~pl 263 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRA-SKPL 263 (703)
T ss_pred ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEccc-CCce
Confidence 6688999999999999999987665554431 11333 399999998 799999999999999999999 4777
Q ss_pred eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEe
Q 020107 233 NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC 312 (331)
Q Consensus 233 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 312 (331)
........-+|..+.|.+.+.+-.+++.....+++|+-.. ++....+. .+..+..+++-|+. .+++++
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~--Gk~~asiE-pt~~lND~C~~p~s---------Gm~f~A 331 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT--GKPMASIE-PTSDLNDFCFVPGS---------GMFFTA 331 (703)
T ss_pred eecccCCccceeeecccccCCCceEEecchHHhhhccccc--CCceeecc-ccCCcCceeeecCC---------ceEEEe
Confidence 7634455668999999887545555555444445555443 45544444 45669999999998 688888
Q ss_pred ecCCCeEEEEcC
Q 020107 313 SFYDRLLRIWMP 324 (331)
Q Consensus 313 ~~~d~~i~iW~~ 324 (331)
- ++..+..|=+
T Consensus 332 n-e~~~m~~yyi 342 (703)
T KOG2321|consen 332 N-ESSKMHTYYI 342 (703)
T ss_pred c-CCCcceeEEc
Confidence 7 7776655533
No 207
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=6.9e-17 Score=127.76 Aligned_cols=154 Identities=14% Similarity=0.218 Sum_probs=131.9
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------------cCccEEEEEEcCCCCeEEEEecCCeE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------------SSSMCLCLEWNPSATSITVGLSDGSV 129 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i 129 (331)
..+|..+.|.+.. ...|++|+.|..+ +|.+..... |...|+++.|+|+|+.|++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~---~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS---LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCc---ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 4579999999983 3399999999999 998765332 67889999999999999999999999
Q ss_pred EEEEcc--------c------cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 130 SIVSVV--------E------SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 130 ~i~d~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
.+|... + ..+...+.+.+|...|..++|+| +++++++++.|..+++||+..+.....+.. |.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d---h~ 165 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDD---HE 165 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccc---cc
Confidence 999876 1 22444566778999999999998 889999999999999999999988777776 99
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
..+..++|.| -.+++++-+.|...+.+++..
T Consensus 166 ~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 166 HYVQGVAWDP-LNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cccceeecch-hhhhhhhhccCcccceeeeee
Confidence 9999999999 888999999998777777654
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.1e-16 Score=124.56 Aligned_cols=241 Identities=16% Similarity=0.208 Sum_probs=179.4
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-------------EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-------------LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-------------iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
...|..++|.-++. ...|...+.+-.+ +|++.+......+|..++.. ...|+++-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~--tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGE--TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCc--eeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 35688888886642 3445444344444 55555555555566665542 3468888899999999
Q ss_pred Eccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEccCCCceeeeecccCC--------CcceEE
Q 020107 133 SVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIRESPFKLAFQNSKIH--------KMGVCC 200 (331)
Q Consensus 133 d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~ 200 (331)
..+.+. -.++..+..+ ..+..+.-++..+..+++|+.. ..+.+||+.+. .++|...... .-.++.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeecc
Confidence 998543 1234444443 4577777777777888889988 89999999977 4444431111 234678
Q ss_pred EEEecCC--CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee
Q 020107 201 IASIPSD--SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL 278 (331)
Q Consensus 201 ~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
+.|-| . ...|++++.-+.+++||.+.+++|+.+ +.-...+++++...|.+ ..++++-..+.+..++++. +...
T Consensus 208 i~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~-fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~--~kl~ 282 (412)
T KOG3881|consen 208 IRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQ-FDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRG--GKLL 282 (412)
T ss_pred ceecC-CCCCceEEEEecceeEEEecCcccCcceeE-eccccCcceeeeecCCC-cEEEEecccchhheecccC--ceee
Confidence 88988 5 788999999999999999999999988 45567899999999998 6777777778877888877 4555
Q ss_pred EE-eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 279 ET-YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 279 ~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.. +.+-.+.|.++..+|.. +++++|| -|+.|||+|+++..
T Consensus 283 g~~~kg~tGsirsih~hp~~---------~~las~G-LDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTH---------PVLASCG-LDRYVRIHDIKTRK 323 (412)
T ss_pred ccccCCccCCcceEEEcCCC---------ceEEeec-cceeEEEeecccch
Confidence 55 88899999999999998 5999999 99999999999843
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.1e-17 Score=130.38 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=149.5
Q ss_pred EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107 109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (331)
..++|+.+|..+++|+.||++|+|+..... .+.....|...|.++.|+| +++.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 688999999999999999999999966543 3566677899999999999 88999999999 9999999999655544
Q ss_pred ecccCCCcceEEEEEecCCC-----CEEEEEecCCeEEEEEecCCCC----CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 189 QNSKIHKMGVCCIASIPSDS-----NTLLTGSYDEYLRVWDVRSISK----PVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.. .........+.|+. ++ .+++.-..-+.|+.||+..... +... ...-...|++++.+++| .+++.+
T Consensus 224 t~-~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 224 TP-FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred CC-cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCC-cEEEEe
Confidence 43 22344566777876 44 2333334556788877765433 2222 12234479999999997 677777
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+.++.+.+++.... ......-+.|...|+++.|+|+. +++++.+ .|.+..+-.+.-
T Consensus 300 T~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pds---------r~~~svS-s~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDS---------RYLASVS-SDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCc---------Ccccccc-cCCceeEEEEee
Confidence 78888888888775 23333344799999999999998 7999988 888888876643
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=7.2e-15 Score=122.58 Aligned_cols=246 Identities=11% Similarity=0.114 Sum_probs=156.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+.+..+.++|.+ ++|+++.+ .++.|.+|+++... .+..... ........++|+|+ +++|+++
T Consensus 35 ~~~~~l~~spd~---~~lyv~~~---------~~~~i~~~~~~~~g-~l~~~~~~~~~~~p~~i~~~~~----g~~l~v~ 97 (330)
T PRK11028 35 GQVQPMVISPDK---RHLYVGVR---------PEFRVLSYRIADDG-ALTFAAESPLPGSPTHISTDHQ----GRFLFSA 97 (330)
T ss_pred CCCccEEECCCC---CEEEEEEC---------CCCcEEEEEECCCC-ceEEeeeecCCCCceEEEECCC----CCEEEEE
Confidence 456667777665 78777763 47899999997422 2322211 12335678999999 8888877
Q ss_pred cC-CccE-EEecCCCc-c--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc-eee----eeeeecccce
Q 020107 89 DA-DGGL-LRDITGEK-I--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ-LEV----LQQWKAHEFE 151 (331)
Q Consensus 89 ~~-dg~i-iw~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~----~~~~~~~~~~ 151 (331)
+. ++.+ +|++.... . ......+++++|+++++++++. ++.|.+||+++.. +.. ..... ....
T Consensus 98 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~ 176 (330)
T PRK11028 98 SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAG 176 (330)
T ss_pred EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCC
Confidence 64 6666 88876321 1 1234577889999999866554 7999999997632 211 01111 1234
Q ss_pred eEEEeeCCCCCcEEEEEcC-CCeEEEEEccC--CCc--eeeeecccC---CCcceEEEEEecCCCCEEEEEe-cCCeEEE
Q 020107 152 LWATSFDVHQPHMVYTGSD-DCKFSGWDIRE--SPF--KLAFQNSKI---HKMGVCCIASIPSDSNTLLTGS-YDEYLRV 222 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i 222 (331)
...++|+| ++++++++.. ++.|.+||+.. ++. ...+...+. +......+.++| ++++++++. .++.|.+
T Consensus 177 p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 177 PRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISV 254 (330)
T ss_pred CceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEE
Confidence 67899999 7777766665 89999999974 221 122221111 122344688999 888888875 4789999
Q ss_pred EEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107 223 WDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA 275 (331)
Q Consensus 223 wd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
|++......+.... ..-......++++|+++.++++...++.+.+|++....+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 99976432222200 111234668999999844444444578899999876433
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6e-15 Score=127.60 Aligned_cols=281 Identities=12% Similarity=0.110 Sum_probs=194.8
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+|.+++.+ ++.+..- +..+.+|......+ ........|...+++.+++|. ++++|+|.
T Consensus 163 ~~~I~~~~~g---e~~~i~~-----------~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn----~~~~Aa~d 224 (792)
T KOG1963|consen 163 PKSIVDNNSG---EFKGIVH-----------MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN----ERYLAAGD 224 (792)
T ss_pred CccEEEcCCc---eEEEEEE-----------eeeEEEEEecccceeeccchhhhhhcccceeEEeccc----cceEEEec
Confidence 4566676666 6666665 77889998887431 122233446777999999999 99999999
Q ss_pred CCccE-EEecCC-C---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 90 ADGGL-LRDITG-E---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 90 ~dg~i-iw~~~~-~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
.||.+ +|.--. . .-|..+|.+++|+++|.+|++|+..|.+.+|.+.+++.+. +..-..+|..+.++
T Consensus 225 ~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---LPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 225 SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---LPRLGSPILHIVVS 301 (792)
T ss_pred cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc---ccccCCeeEEEEEc
Confidence 99999 886544 1 1167899999999999999999999999999999986433 33346789999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC--------CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI--------HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 230 (331)
| ++.+.+....|..|.+....+......+..... ..+-.+.++++| ..+.++-.+..|.|.+||+.+...
T Consensus 302 ~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 302 P-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDST 379 (792)
T ss_pred C-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccce
Confidence 8 778888888899999988765444333333111 245577889999 888899999999999999988533
Q ss_pred Cceeee----ee------cCCceEEEEECCCCCCeEEEEEe--------cC---cEEEEEEcCcc--cceeEE-eecCCc
Q 020107 231 PVNETS----VC------LGGGVWRIKHHPFIPGLVLAACM--------HN---GFAVVKVGGEK--AEVLET-YAKHGS 286 (331)
Q Consensus 231 ~~~~~~----~~------~~~~v~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~--~~~~~~-~~~h~~ 286 (331)
. ..+. .. +.-.++.++.+-. +.++++.. .+ .+++|...... ..+... ...|..
T Consensus 380 i-~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 380 I-YKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred e-eeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 2 2211 11 1224667777776 44555432 12 23445544332 111222 236877
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.+....+.+... ....+++| .||.++||-+.+
T Consensus 457 ~~vat~~~~~~r-------s~~~vta~-~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 457 AFVATIFLNPTR-------SVRCVTAS-VDGDFKIWVFTD 488 (792)
T ss_pred eeEEEEEecCcc-------cceeEEec-cCCeEEEEEEec
Confidence 777766665542 13899999 999999999844
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=142.36 Aligned_cols=274 Identities=15% Similarity=0.195 Sum_probs=198.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+-+|-.+|.+..+.-.|.++++|+ .|..++||..++.. .+.. .++|.+.|+.++.+.. ..++++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgs----------dd~lvKiwS~et~~-~lAs-~rGhs~ditdlavs~~----n~~iaa 249 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGS----------DDRLVKIWSMETAR-CLAS-CRGHSGDITDLAVSSN----NTMIAA 249 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecC----------ccceeeeeeccchh-hhcc-CCCCccccchhccchh----hhhhhh
Confidence 445665666666666669999998 89999999987765 4444 4899999999999998 789999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc-ccceeeeeeeec-ccceeEEEeeC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV-ESQLEVLQQWKA-HEFELWATSFD 158 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-~~~~v~~~~~~ 158 (331)
++.|..| +|.+..+.. |.+.|++++|+|-. +.+.||++++||.+ ....-....++. ....+.++.|.
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 9999999 999988754 78999999999954 77889999999987 211100011111 12345566666
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
. ....+++++.|+.-..|.+..... +...+.-+..+.....+.++.-.+..+++|++..+ ...+. ...
T Consensus 326 ~-~~~~f~Tgs~d~ea~n~e~~~l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~-l~g 393 (1113)
T KOG0644|consen 326 N-NGDRFLTGSRDGEARNHEFEQLAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHN-LMG 393 (1113)
T ss_pred c-cccccccccCCcccccchhhHhhh---------hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhh-hcc
Confidence 4 677899999999998887654321 22222222222213356777778889999999986 33333 478
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
|...++.+.++|-.+...+.++.++...||++|.. .+++.+ .+ ...+.+.+|+++| ..++... .-|
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg--~pik~y~~g-h~kl~d~kFSqdg---------ts~~lsd-~hg 460 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG--IPIKHYFIG-HGKLVDGKFSQDG---------TSIALSD-DHG 460 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccC--Ccceeeecc-cceeeccccCCCC---------ceEecCC-CCC
Confidence 99999999999998888889999999999999995 333333 34 4667788999998 4555555 567
Q ss_pred eEEEEcCCC
Q 020107 318 LLRIWMPES 326 (331)
Q Consensus 318 ~i~iW~~~~ 326 (331)
.++|.....
T Consensus 461 ql~i~g~gq 469 (1113)
T KOG0644|consen 461 QLYILGTGQ 469 (1113)
T ss_pred ceEEeccCC
Confidence 888776543
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=6e-15 Score=115.69 Aligned_cols=232 Identities=13% Similarity=0.153 Sum_probs=168.4
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc------cCccEEEEEEcCCCCeEEEEecC--CeEEEEEccccc
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI------SSSMCLCLEWNPSATSITVGLSD--GSVSIVSVVESQ 138 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~ 138 (331)
..+..+.|+.+ ...|..|+.||.-+++...... ....|..+-|+. .++|..+.+ ..+++++.+.+.
T Consensus 6 ~ti~~~~~Nqd----~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQD----STLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeeccc----eeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCc
Confidence 34666779988 8899999999988776654322 234455555654 455555443 458888888665
Q ss_pred eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--c
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--Y 216 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~ 216 (331)
. +..+. ....|.++.++. +.|+++-.+. |+|||+++.+.+..+...+.+...+.++++++ .+.+++--+ .
T Consensus 80 ~--ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t 151 (391)
T KOG2110|consen 80 T--ICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTT 151 (391)
T ss_pred e--EEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCC
Confidence 4 33333 345789999875 5566665444 99999999988888877656788898888887 667777654 4
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc--EEEEEEcCcccceeEEeec--CCcceeeee
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG--FAVVKVGGEKAEVLETYAK--HGSLAYGAD 292 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--h~~~v~~~~ 292 (331)
.|.|.+||..+. +++.. ...|.+++-+++|+++| .+++++++.+ |+++.+.+ ++.+.+|+- -...|++++
T Consensus 152 ~GdV~l~d~~nl-~~v~~-I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 152 SGDVVLFDTINL-QPVNT-INAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred CceEEEEEcccc-eeeeE-EEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEE
Confidence 688999999986 55555 47999999999999995 4555555544 35555544 788888873 234789999
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|+|+. ++|+..| ..++|+++.++...
T Consensus 226 Fs~ds---------~~L~~sS-~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 226 FSPDS---------QFLAASS-NTETVHIFKLEKVS 251 (391)
T ss_pred ECCCC---------CeEEEec-CCCeEEEEEecccc
Confidence 99999 6888888 89999999997654
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=7.3e-16 Score=135.70 Aligned_cols=244 Identities=14% Similarity=0.148 Sum_probs=175.7
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEcc
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 135 (331)
+-..+.|+|- ...++++...-.+ +|+.+.++. ....|..+.+-. |..++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 4567888888 7788888866666 999887654 356788888754 45679999999999999754
Q ss_pred cc---ceeeeeeeec-------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 136 ES---QLEVLQQWKA-------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 136 ~~---~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
.. +.+.+..+.+ ..+.-.-+.|.... .+|+++++-..|+|||.........+.. +....|+++.-+-
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTALSADL 1218 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeeccc--CCCccceeecccc
Confidence 32 2223333221 11222446787544 4555555588999999998766555544 2466788887766
Q ss_pred CCCCEEEEEecCCeEEEEEecCCCC-CceeeeeecCCc--eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLGGG--VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
..++++++|..||.|++||.|.... ........|... |..+.+.+.|-+.+++++.++.|++|+++....+...+..
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 5689999999999999999998533 122334678777 9999999987677999999999999999884333333333
Q ss_pred cCC--c-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 283 KHG--S-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 283 ~h~--~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.|. + .++++..++.. ..+|+|+ . +.|+||++....+
T Consensus 1299 ~~~~yGs~lTal~VH~ha---------piiAsGs-~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHA---------PIIASGS-A-QLIKIYSLSGEQL 1337 (1387)
T ss_pred eccccCccceeeeeccCC---------CeeeecC-c-ceEEEEecChhhh
Confidence 333 3 58999999998 5999998 6 9999999986654
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.1e-16 Score=127.24 Aligned_cols=195 Identities=15% Similarity=0.093 Sum_probs=144.5
Q ss_pred eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107 70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 142 (331)
..++|+++ +..|++++.||.+ +|+..... .|...|.++.|+||++.|++-+.| ..+||+.+++.....
T Consensus 148 k~vaf~~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCC----CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 57899999 8999999999999 99965433 378899999999999999999999 999999998733111
Q ss_pred eeeecccceeEEEeeCCCCC---c--EEEEEcCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEEecCCCCEEEEEe
Q 020107 143 QQWKAHEFELWATSFDVHQP---H--MVYTGSDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
.+-.........+.|+. ++ . +++.....+.|+.||+...+.-..++.. -.....|++++.++ ++++++.|+
T Consensus 223 ~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT 300 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT 300 (398)
T ss_pred cCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence 22123344566777775 44 2 2333345567777777644321111110 01244799999999 999999999
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.||.|-+++..+. +.+......|...|+.+.|+|+. +.+...+++....+..+..+
T Consensus 301 ~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 MDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 9999999999986 44444467899999999999997 66677778888888887653
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2e-16 Score=130.05 Aligned_cols=209 Identities=18% Similarity=0.234 Sum_probs=156.1
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.|+||..||.+..++.+|.+||+|+ .|-.+.|||.-..+ .+..+..+|...|.++.|-|... .++++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGS----------DD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tn--nriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGS----------DDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTN--NRIVL 111 (758)
T ss_pred hhccccceecceeecCCCCEEeecC----------CcceEEeecchhcc-eeeeeecccccceeEEeeeccCC--CeEEE
Confidence 5677877777777777779999999 89999999998655 78888899999999999999754 57899
Q ss_pred EEcCCccE-EEecCCCc----------------ccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccce-e-------
Q 020107 87 QADADGGL-LRDITGEK----------------ISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQL-E------- 140 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~----------------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-~------- 140 (331)
+|..|..| ++|+...+ +|...|..++-.|++ ..+.++++||+|+.+|++.... .
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999 99987521 256677788888888 5688999999999999987321 0
Q ss_pred eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc------------------eeeeecccCCC-------
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF------------------KLAFQNSKIHK------- 195 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~~~~~~------- 195 (331)
.+..+...--...++..+|..+.+|++|+.|-..++||.|.... +..+. ++|-
T Consensus 192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~ 269 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNL 269 (758)
T ss_pred HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCccccc
Confidence 01112223345679999999999999999999999999653110 11111 1121
Q ss_pred ----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 196 ----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 196 ----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
..++-+.|+| +|.-|++.-....|.++|+...+.+
T Consensus 270 ~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 270 DRYITCCTYVTFNP-NGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccceeeeEEEEECC-CCcEEEEeeCCeEEEEEeecCCCCc
Confidence 1256678899 7777766666678999999875443
No 217
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.5e-16 Score=135.13 Aligned_cols=305 Identities=15% Similarity=0.255 Sum_probs=216.9
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
.++..++....+..+|.+ +-+|.++ .--+.+.|++..-.+.+-+.....-.|-.+.|+|.... ..
T Consensus 19 lsl~v~~~~~a~si~p~g---rdi~lAs-----------r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~-~~ 83 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSG---RDIVLAS-----------RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAK-PY 83 (1081)
T ss_pred eEEEecCcccceeecccc---chhhhhh-----------hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCC-ce
Confidence 456677888888888887 5666666 33577778877654555552222334889999987432 34
Q ss_pred eEEEEcCCccEEEecCCCcc---------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107 84 FLAQADADGGLLRDITGEKI---------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 84 ~l~~~~~dg~iiw~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
.+++.+....++|++..... |...++.+.|+|+.+ .+++++.|-.+..||+++.. .++..+..-.....
T Consensus 84 wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAAS 162 (1081)
T ss_pred eEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCc
Confidence 56666766777999876432 678899999999765 47888889999999999865 35555555556788
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
.++|+..+++.+++ +....|++||++.+...... . +.|...|+.++|+......+.+++.|++|++||..+..+...
T Consensus 163 qVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s-~-K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCS-L-KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred eeeecccCcchhhh-ccCCceEEEeccCCCcceEE-e-cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 99999766665554 55788999999987643222 1 338899999999876677899999999999999987533332
Q ss_pred eeeeecCCceEEEEECCCCCCeEEEEEecCc-EEEEEEcCc--------ccceeEEeecCCcceeeeeecCCCCcc-ccc
Q 020107 234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNG-FAVVKVGGE--------KAEVLETYAKHGSLAYGADWQRGRSSL-EGK 303 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~ 303 (331)
. ......+|+.-++.|-++++++.-...+. +.+++..+. ..+.+.+|.||...|....|-..+... ..+
T Consensus 240 ~-~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 240 R-TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred e-eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 2 35667789999999988776655433222 222222221 166889999999999988887654210 122
Q ss_pred ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 304 RKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 304 ~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
...-.|+|-+ .|..+++|.+.+.++
T Consensus 319 ~rdfQLVTWS-kD~~lrlWpI~~~i~ 343 (1081)
T KOG0309|consen 319 SRDFQLVTWS-KDQTLRLWPIDSQIQ 343 (1081)
T ss_pred ccceeEEEee-cCCceEeeeccHHHH
Confidence 3345799999 999999999987654
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.2e-15 Score=118.93 Aligned_cols=196 Identities=14% Similarity=0.217 Sum_probs=153.3
Q ss_pred CCCcEEEEeccCcc---cceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC--ccE-EEecCCCcc------------
Q 020107 42 RNGSISLFNVNAEE---KNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD--GGL-LRDITGEKI------------ 103 (331)
Q Consensus 42 ~~g~i~vw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i-iw~~~~~~~------------ 103 (331)
.+|.+++|..+.+. .++..+.. ..++..|.-+|..+ .++++|+.. ..+ +|++...+.
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p---~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDP---YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred cCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCC---ceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 69999999988432 12333322 25688888888743 367778887 444 999887633
Q ss_pred ---cCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 104 ---SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 104 ---~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
.+-.++++.|-+. ...|++++.-+.+++||.+.++ .|+..+.-.+.+++++...| +++.+++|..-|.+..+|
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecC-CCcEEEEecccchhheec
Confidence 1344578889887 6789999999999999999765 67888887888999999998 889999999999999999
Q ss_pred ccCCCceee-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 179 IRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
++.++.... +.. ..+.|++|..+| ...+++++|-|..+||+|+++ .+++.. ......++++.+.++
T Consensus 276 ~r~~kl~g~~~kg---~tGsirsih~hp-~~~~las~GLDRyvRIhD~kt-rkll~k--vYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 276 LRGGKLLGCGLKG---ITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKT-RKLLHK--VYVKSRLTFILLRDD 342 (412)
T ss_pred ccCceeeccccCC---ccCCcceEEEcC-CCceEEeeccceeEEEeeccc-chhhhh--hhhhccccEEEecCC
Confidence 999875544 433 789999999999 889999999999999999998 455554 444566777777654
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.6e-14 Score=123.92 Aligned_cols=233 Identities=9% Similarity=0.033 Sum_probs=152.6
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecCCCcc-----cCccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDITGEKI-----SSSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~~~~~-----~~~~v~~~~~ 113 (331)
...|.++|.+... .+.+ ..+...+...+|+|+ ++.|+..+. +..+ +|++.+++. ....+....|
T Consensus 178 ~~~l~~~d~dg~~--~~~l-t~~~~~~~~p~wSPD----G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~ 250 (429)
T PRK03629 178 PYELRVSDYDGYN--QFVV-HRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAF 250 (429)
T ss_pred ceeEEEEcCCCCC--CEEe-ecCCCceeeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEE
Confidence 3478888888764 3333 335567999999999 888876543 2234 888876542 1334557899
Q ss_pred cCCCCeEEEE-ecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCe--EEEEEccCCCceee
Q 020107 114 NPSATSITVG-LSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCK--FSGWDIRESPFKLA 187 (331)
Q Consensus 114 ~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~ 187 (331)
+|||+.|+.. +.+| .|.+||+.+++. ..+..+...+....|+| +++.|+..+. ++. |.++|+.++.. ..
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~---~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 9999988765 3344 588899987754 23333445678899999 6676655554 444 44446665543 33
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.. +........|+| ++++|+..+.+ ..|.+||+.++. ... +. .........|+|++ ..++.++.+++
T Consensus 326 lt~---~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~-Lt-~~~~~~~p~~SpDG-~~i~~~s~~~~ 396 (429)
T PRK03629 326 ITW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--VQV-LT-DTFLDETPSIAPNG-TMVIYSSSQGM 396 (429)
T ss_pred eec---CCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCC--eEE-eC-CCCCCCCceECCCC-CEEEEEEcCCC
Confidence 333 344456789999 88888776543 358889987753 222 11 12234567899998 56666666665
Q ss_pred EEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
...+.+.+..++....+.+|.+.+...+|+|-
T Consensus 397 ~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 397 GSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 55555555446777778888888999999984
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.2e-13 Score=105.03 Aligned_cols=175 Identities=14% Similarity=0.162 Sum_probs=129.6
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc---------cCccEEEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI---------SSSMCLCLE 112 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~---------~~~~v~~~~ 112 (331)
..+.+.|||=.... ++..+ ....+|.++.+.++ .|++.-.+...+|....... .+....++.
T Consensus 73 ~pNkviIWDD~k~~-~i~el--~f~~~I~~V~l~r~------riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 73 PPNKVIIWDDLKER-CIIEL--SFNSEIKAVKLRRD------RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred CCceEEEEecccCc-EEEEE--EeccceeeEEEcCC------eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 46789999933222 33333 35688999999998 78877766555777663211 122233333
Q ss_pred EcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe-EEEEEccCCCceeeeec
Q 020107 113 WNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK-FSGWDIRESPFKLAFQN 190 (331)
Q Consensus 113 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~ 190 (331)
-..+...||.-+ .-|+|+|-|+...+..+...+.+|...|.|++.+. ++.++|+++..|+ |||||..++..+.++..
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 222333344433 47999999998765434567889999999999996 8999999999997 69999999998888876
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
......|++|+|+| +..+|++.+..|++++|.++..
T Consensus 223 -G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 -GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence 33567899999999 9999999999999999999863
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3e-13 Score=104.32 Aligned_cols=229 Identities=12% Similarity=0.164 Sum_probs=148.9
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC--cEeEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA--GIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
...++|..+. .-+++|. +.-.+||+.+.-++.... ..+.+ .+..|-|-.+ +||-.+
T Consensus 8 ~lsvs~NQD~---ScFava~-----------~~Gfriyn~~P~ke~~~r--~~~~~G~~~veMLfR~N------~laLVG 65 (346)
T KOG2111|consen 8 TLSVSFNQDH---SCFAVAT-----------DTGFRIYNCDPFKESASR--QFIDGGFKIVEMLFRSN------YLALVG 65 (346)
T ss_pred eeEEEEccCC---ceEEEEe-----------cCceEEEecCchhhhhhh--ccccCchhhhhHhhhhc------eEEEec
Confidence 4457787776 7999997 777999999875422111 12222 2444445444 555433
Q ss_pred CCc--c-----E-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec--ccceeEE
Q 020107 90 ADG--G-----L-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA--HEFELWA 154 (331)
Q Consensus 90 ~dg--~-----i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~ 154 (331)
..+ . + |||-....+ -..+|.++.+.+ ..|++.-. +.|.+|...+.- +.+..+.. ......+
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~-~~I~VytF~~n~-k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLE-NKIYVYTFPDNP-KLLHVIETRSNPKGLCS 141 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC--CeEEEEec-CeEEEEEcCCCh-hheeeeecccCCCceEe
Confidence 222 1 1 999544433 256777777765 45555544 789999987431 22333332 2333444
Q ss_pred EeeCCCCCcEEEE-EcCCCeEEEEEccCCCce--eeeecccCCCcceEEEEEecCCCCEEEEEecCCe-EEEEEecCCCC
Q 020107 155 TSFDVHQPHMVYT-GSDDCKFSGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-LRVWDVRSISK 230 (331)
Q Consensus 155 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~ 230 (331)
++-+. +..+|+. |-.-|.|+|-|+...+.. ..+. +|...|.|++.+- +|.++||++..|+ |||||..++ .
T Consensus 142 ~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g-~ 215 (346)
T KOG2111|consen 142 LCPTS-NKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG-T 215 (346)
T ss_pred ecCCC-CceEEEcCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC-c
Confidence 43332 3334443 335699999999876642 3344 4999999999999 9999999999986 799999996 5
Q ss_pred Cceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 231 PVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 231 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
++.++..+ ....|++++|+|+. ..+++++..++++++.+.+.
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence 55553333 34679999999996 66667777788899999774
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.67 E-value=8e-12 Score=104.47 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=177.3
Q ss_pred EEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-ecCcEeEEEEcCCCCCCCCeEEEEcCC----ccE-EEecCC
Q 020107 27 LAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-DTAGIFDIKWSPVGGNAGPFLAQADAD----GGL-LRDITG 100 (331)
Q Consensus 27 la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i-iw~~~~ 100 (331)
+.+|+|.. ...+.|++|+++.....+...... .......++++|+ +++|.+.... |.+ .+.+..
T Consensus 2 ~~vgsy~~------~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~----~~~LY~~~e~~~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 2 LYVGSYTN------GKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD----GRRLYVVNEGSGDSGGVSSYRIDP 71 (345)
T ss_dssp EEEEECCS------SSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT----SSEEEEEETTSSTTTEEEEEEEET
T ss_pred EEEEcCCC------CCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC----CCEEEEEEccccCCCCEEEEEECC
Confidence 45666532 135899999996555445544332 3455788999999 8888888774 456 555544
Q ss_pred C--cc--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccc-cceeeeeeee-----------cccceeEEEee
Q 020107 101 E--KI--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVE-SQLEVLQQWK-----------AHEFELWATSF 157 (331)
Q Consensus 101 ~--~~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~-----------~~~~~v~~~~~ 157 (331)
. .. .......++++|++++|+++.. +|.|.++++.. +.+....... .......++.+
T Consensus 72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 72 DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 2 22 2344567899999999988875 99999999987 3332221111 12245678999
Q ss_pred CCCCCcEEEEE-cCCCeEEEEEccCCC--cee--eeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCC
Q 020107 158 DVHQPHMVYTG-SDDCKFSGWDIRESP--FKL--AFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKP 231 (331)
Q Consensus 158 ~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 231 (331)
+| +++++++. -....|.+|++.... ... .+.. ......+.+.|+| +++++++.. .++.|.++++......
T Consensus 152 ~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 152 SP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp -T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCc
Confidence 99 66655554 455689999998765 211 2222 2467789999999 887775554 6788999999832222
Q ss_pred ceee--eee----c--CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCCCccc
Q 020107 232 VNET--SVC----L--GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 232 ~~~~--~~~----~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 301 (331)
+... ... . ......|+++|+++.++++....+.|.++++....+ +.+..+.........++++|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g---- 303 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG---- 303 (345)
T ss_dssp EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS----
T ss_pred eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC----
Confidence 2111 111 1 125788999999855666666788899999965433 3344444334457899999999
Q ss_pred ccccCcEEEEeecCCCeEEEEcC--CCccc
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMP--ESDCL 329 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~--~~~~~ 329 (331)
++|+.+...++.|.+|++ +++.+
T Consensus 304 -----~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 304 -----RYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp -----SEEEEEETTTTEEEEEEEETTTTEE
T ss_pred -----CEEEEEecCCCeEEEEEEeCCCCcE
Confidence 566655537889999976 45554
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.7e-14 Score=122.85 Aligned_cols=204 Identities=11% Similarity=0.069 Sum_probs=134.1
Q ss_pred ccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 92 GGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 92 g~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
..+ +|+...... +...+.+..|+|+|+.|+.++.+ ..|++||+.+++...+..+.++ ...++|+| ++
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CC
Confidence 344 788765432 35678899999999999887653 4799999988765445444443 34689999 66
Q ss_pred cEEEEE-cCCCeEEEE--EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee
Q 020107 163 HMVYTG-SDDCKFSGW--DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 163 ~~l~~~-~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
+.|+.+ +.+|.+.|| |+.++. ...+.. +...+....|+| +++.|+..+ .++...+|++......... ..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~---~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~--l~ 332 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTS---GAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASL--VG 332 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeecc---CCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE--ec
Confidence 666654 467866555 655554 333433 566788999999 888766554 6788999988654333332 23
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
+.+ ....|+|++ ..++..+. +.+..|++.. ++.......+ ....+.|+|++ ++|+.++ .++.
T Consensus 333 ~~~--~~~~~SpDG-~~ia~~~~-~~i~~~Dl~~--g~~~~lt~~~--~~~~~~~sPdG---------~~i~~~s-~~g~ 394 (429)
T PRK01742 333 GRG--YSAQISADG-KTLVMING-DNVVKQDLTS--GSTEVLSSTF--LDESPSISPNG---------IMIIYSS-TQGL 394 (429)
T ss_pred CCC--CCccCCCCC-CEEEEEcC-CCEEEEECCC--CCeEEecCCC--CCCCceECCCC---------CEEEEEE-cCCC
Confidence 333 567899997 44444444 5555666654 2322211222 23567899998 6899888 7888
Q ss_pred EEEEcC
Q 020107 319 LRIWMP 324 (331)
Q Consensus 319 i~iW~~ 324 (331)
+.+|.+
T Consensus 395 ~~~l~~ 400 (429)
T PRK01742 395 GKVLQL 400 (429)
T ss_pred ceEEEE
Confidence 887775
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.5e-14 Score=120.38 Aligned_cols=232 Identities=11% Similarity=0.079 Sum_probs=147.7
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~ 113 (331)
...|.+||.+... .+.+ ..+...+...+|+|+ ++.|+..+.++ .+ +|++.+++. ......+.+|
T Consensus 183 ~~~l~i~D~~g~~--~~~l-t~~~~~v~~p~wSpD----g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 183 RYALQVADSDGYN--PQTI-LRSAEPILSPAWSPD----GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSF 255 (433)
T ss_pred eEEEEEECCCCCC--ceEe-ecCCCccccccCCCC----CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceE
Confidence 3468889987653 3333 345677999999999 88888776443 34 888876543 2334457899
Q ss_pred cCCCCeEEE-EecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCe--EEEEEccCCCceee
Q 020107 114 NPSATSITV-GLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCK--FSGWDIRESPFKLA 187 (331)
Q Consensus 114 ~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~ 187 (331)
+|+|+.|+. .+.+| .|++||+.+++. ..+..+.......+|+| +++.++..+ .+|. |.++|+.+++. ..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~-~~ 330 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL---TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA-ER 330 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCe---EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EE
Confidence 999998754 44455 599999988754 33444444556789999 666665554 4554 66667766653 33
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.. +.......+|+| +++.|+..+.++ .|.+||+.++ .+. . ..+........|+|++..+++++...+.
T Consensus 331 lt~---~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~--Lt~~~~~~~p~~spdG~~i~~~s~~~g~ 402 (433)
T PRK04922 331 LTF---QGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTG-SVR-T--LTPGSLDESPSFAPNGSMVLYATREGGR 402 (433)
T ss_pred eec---CCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCC-CeE-E--CCCCCCCCCceECCCCCEEEEEEecCCc
Confidence 332 233455789999 888888765433 6999999764 222 2 2233345567999998333333333333
Q ss_pred EEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
-.++.+... +.....+..+.+.+...+|+|
T Consensus 403 ~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 403 GVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 344444333 455566666667778888887
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=1.3e-13 Score=107.45 Aligned_cols=242 Identities=16% Similarity=0.188 Sum_probs=165.0
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---ceEEeEeeec------------CcEeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---NLELLYRMDT------------AGIFDIKWS 75 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~~~~~~~~~~------------~~v~~~~~~ 75 (331)
-+.+|.|...+ ++||+|. .+|.|.+|.-..... .....+..|. ..|+.++|.
T Consensus 27 iis~vef~~~G---e~LatGd----------kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 27 IISAVEFDHYG---ERLATGD----------KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred ceeeEEeeccc---ceEeecC----------CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 35667776666 8999998 899999997654431 2333344443 358999999
Q ss_pred CCCCCCCCeEEEEcCCccE-EEecCCCcc------------------------------------------cCccEEEEE
Q 020107 76 PVGGNAGPFLAQADADGGL-LRDITGEKI------------------------------------------SSSMCLCLE 112 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------------------------------------------~~~~v~~~~ 112 (331)
++.+ ...++..+.|.++ +|.+..... |.-.|.+++
T Consensus 94 ~~~n--~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 94 DDGN--LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred CCCC--ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 8854 4567777888888 887753211 344578899
Q ss_pred EcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecc-----cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--
Q 020107 113 WNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAH-----EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-- 184 (331)
Q Consensus 113 ~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 184 (331)
++.|.+.++++ .|=.|.+|+++-.. .-.+..++.+ ..-|++..|+|...+.++-.+..|+|++-|+|....
T Consensus 172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 99888887775 45789999987521 1112223332 356889999998889999999999999999995321
Q ss_pred --eeeeecc---------cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC------------
Q 020107 185 --KLAFQNS---------KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG------------ 241 (331)
Q Consensus 185 --~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------ 241 (331)
...+... ..--..|..+.|++ +|+++++-.. -+|++||+....+|+.. ...|..
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t-~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVET-YPVHEYLRSKLCSLYEND 327 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceE-EeehHhHHHHHHHHhhcc
Confidence 1111110 00124578899999 9999998754 68999999877777766 233321
Q ss_pred ce---EEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 242 GV---WRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 242 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.| ..++|+.++ ..+++++..+-++++....
T Consensus 328 ~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 328 AIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred chhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence 22 457888875 5667777777777777443
No 226
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=4.6e-14 Score=107.22 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=98.7
Q ss_pred EEEEEcCCCCeEEEEec----------CCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCCCcEEEE--EcCCCeEE
Q 020107 109 LCLEWNPSATSITVGLS----------DGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQPHMVYT--GSDDCKFS 175 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~--~~~dg~i~ 175 (331)
..+.|+++|++|++-.. -|...+|.++.... +...+.. ..++|.+++|+| +++.|++ |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 35678888877554332 23456666644321 2333322 345799999999 5565443 44678999
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
+||++ .+ ..... +...+..+.|+| +|++|++++.+ |.|.+||.++. +.+.. ..|. .+..++|+|+|
T Consensus 87 lyd~~-~~--~i~~~---~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~--~~~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 87 LYDVK-GK--KIFSF---GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-KKIST--FEHS-DATDVEWSPDG 155 (194)
T ss_pred EEcCc-cc--EeEee---cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-EEeec--cccC-cEEEEEEcCCC
Confidence 99997 33 33333 456788999999 99999998754 66999999974 44444 3444 47899999998
Q ss_pred CCeEEEEEe------cCcEEEEEEc
Q 020107 253 PGLVLAACM------HNGFAVVKVG 271 (331)
Q Consensus 253 ~~~~~~~~~------~~~~~~~~~~ 271 (331)
..++++.. ++++++|+..
T Consensus 156 -r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 156 -RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -CEEEEEEeccceeccccEEEEEec
Confidence 44554443 6777777764
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.6e-14 Score=109.72 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=137.7
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEcccc-
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVES- 137 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~- 137 (331)
-.+..++|++. --.+|++..|-.+ +++-..... ....|.|++|-|.+. .|++|+. +-|.+|.....
T Consensus 99 ~dlr~~aWhqH----~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQH----IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechh----hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 45888999997 5678888888888 887665222 367899999999654 5777777 55889987541
Q ss_pred ---c--------eeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 138 ---Q--------LEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 138 ---~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
+ ...+....+| .+|+++.|++ ++..+++++ .|..|.|||..++...+.... ..+.++-+.|+|
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---glgg~slLkwSP 248 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK---GLGGFSLLKWSP 248 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccccc---CCCceeeEEEcC
Confidence 1 0112223445 5899999998 777777776 577899999999987766644 577889999999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
++.+|..+.-|+..++|..........- .-..+.|...+|+|.|..++++....-. ++.+
T Consensus 249 -dgd~lfaAt~davfrlw~e~q~wt~erw--~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl 308 (445)
T KOG2139|consen 249 -DGDVLFAATCDAVFRLWQENQSWTKERW--ILGSGRVQTACWSPCGSFLLFACSGSPR--LYSL 308 (445)
T ss_pred -CCCEEEEecccceeeeehhcccceecce--eccCCceeeeeecCCCCEEEEEEcCCce--EEEE
Confidence 9999999999999999966543222222 3445699999999998555555555444 4444
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=8.6e-16 Score=123.76 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=180.4
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 141 (331)
+-..+.++.+ |..|+.|+.-|.+ .+|..+.+.+ ...|.++.|-.+.+++|++ ....++|||-..-+
T Consensus 131 GPY~~~ytrn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE--- 202 (545)
T KOG1272|consen 131 GPYHLDYTRN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE--- 202 (545)
T ss_pred CCeeeeecCC----ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE---
Confidence 4567888888 9999999999999 7777777664 4667888898887777776 45789999976544
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 221 (331)
+..++.| ..|..+.|-| .--+|++++..|.++.-|+.+++.+..+.. ..+.+..+.-+| -...+-+|...|+|.
T Consensus 203 lHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP-~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNP-YNAVIHLGHSNGTVS 276 (545)
T ss_pred Eeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCC-ccceEEEcCCCceEE
Confidence 4445544 3689999999 557889999999999999999998888877 678888999999 777899999999999
Q ss_pred EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107 222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 301 (331)
+|.... +.|+.. +..|.++|.+|++.++| .+++++|.|..++|||++.. ..+.++.. .-+...+++|..+
T Consensus 277 lWSP~s-kePLvK-iLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~--~ql~t~~t-p~~a~~ls~Sqkg---- 346 (545)
T KOG1272|consen 277 LWSPNS-KEPLVK-ILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNF--YQLHTYRT-PHPASNLSLSQKG---- 346 (545)
T ss_pred ecCCCC-cchHHH-HHhcCCCcceEEECCCC-cEEeecccccceeEeeeccc--cccceeec-CCCcccccccccc----
Confidence 999988 466665 57999999999999998 88899999999999999986 34444443 3456778888876
Q ss_pred ccccCcEEEEeecCCCeEEEEc
Q 020107 302 GKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
+|| +| ....|.||.
T Consensus 347 ------lLA-~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 347 ------LLA-LS-YGDHVQIWK 360 (545)
T ss_pred ------cee-ee-cCCeeeeeh
Confidence 444 44 577899996
No 229
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=7.3e-12 Score=98.76 Aligned_cols=281 Identities=14% Similarity=0.109 Sum_probs=186.0
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEcCCcc---E-E--Ee
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQADADGG---L-L--RD 97 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~---i-i--w~ 97 (331)
..+.+|+|... .+.-|++|++++....+.... -.+.+.++-|+|+|+ ++.|.++..+|. + - ||
T Consensus 3 ~~~YiGtyT~~------~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~----~~~LY~v~~~~~~ggvaay~iD 72 (346)
T COG2706 3 QTVYIGTYTKR------ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD----QRHLYVVNEPGEEGGVAAYRID 72 (346)
T ss_pred eEEEEeeeccc------CCCceEEEEEeCcccccchhhhccccCCCceEEECCC----CCEEEEEEecCCcCcEEEEEEc
Confidence 35666765322 377899999996543333322 235577899999999 888988877643 3 3 33
Q ss_pred cCCCcc--------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccc-cceeeeeeeecccce----------eEEEee
Q 020107 98 ITGEKI--------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVE-SQLEVLQQWKAHEFE----------LWATSF 157 (331)
Q Consensus 98 ~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~~~~~~----------v~~~~~ 157 (331)
-..+.. ...+-+.+++++++++++++.. .|.|.++-++. +.+........|.+. +....+
T Consensus 73 ~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 73 PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 332332 2344478999999999998876 78999999966 544333333345544 888999
Q ss_pred CCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee
Q 020107 158 DVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 158 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 235 (331)
.| +++++++.. .--.|.+|++..++....-...-......+.|.|+| ++++.+... .+++|.+|........+.++
T Consensus 153 tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 153 TP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 99 777777765 345789999997765332222112467789999999 998887766 58999999998743333321
Q ss_pred e------e--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee--EEeecCCcceeeeeecCCCCccccccc
Q 020107 236 S------V--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL--ETYAKHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 236 ~------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
. . ........|..+|+++-+.++--..+.|.++.+....+++. .....+...-.++.+++.+
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-------- 302 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-------- 302 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC--------
Confidence 1 1 12335677899999733333334667888899988754432 2222344446788999998
Q ss_pred CcEEEEeecCCCeEEEEcCCC
Q 020107 306 NSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 306 ~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++|+.++..+..|.++.++.
T Consensus 303 -~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 303 -RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred -CEEEEEccCCCcEEEEEEcC
Confidence 67777763556788887654
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.64 E-value=4.1e-14 Score=110.14 Aligned_cols=218 Identities=10% Similarity=0.118 Sum_probs=151.0
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEe----------cCCCcccCccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRD----------ITGEKISSSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~----------~~~~~~~~~~v~~ 110 (331)
.|.+++||--.+...-...+...-..+++++.+.++ ...|++|-.+|++ -+. ++....|...+..
T Consensus 44 ~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e----~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~ 119 (404)
T KOG1409|consen 44 EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE----SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSA 119 (404)
T ss_pred ccceeeeEEeccccccCchhhhhCCCCceEeeeecc----ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceee
Confidence 799999996544332333343334577999999999 8899999999999 222 2223347888999
Q ss_pred EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
+-|+...+.+++.+.|..+.---.+.+.. +..+.. ....+++.+.- .+...|...|.|.+-.+....+. .+..
T Consensus 120 ~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~-~i~~ 192 (404)
T KOG1409|consen 120 IVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQ-LITT 192 (404)
T ss_pred EEecCCceeEEEeccccceEEEeeccCCc--ccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCc-eEEE
Confidence 99998889999999988875444443322 111110 11112222221 25566666777777666544433 3333
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
..+|.+.++++.|.| ...+|.+|..|..+.+||+-..+. .......|...|..+...+.- ..+++.+.++++.+|++
T Consensus 193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNM 269 (404)
T ss_pred EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEec
Confidence 366999999999999 889999999999999999987433 333367899999988887765 67888888999999988
Q ss_pred cCc
Q 020107 271 GGE 273 (331)
Q Consensus 271 ~~~ 273 (331)
...
T Consensus 270 n~~ 272 (404)
T KOG1409|consen 270 NVK 272 (404)
T ss_pred cce
Confidence 653
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.7e-13 Score=116.53 Aligned_cols=231 Identities=15% Similarity=0.098 Sum_probs=144.8
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-c--cE-EEecCCCcc-----cCccEEEEEEc
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-G--GL-LRDITGEKI-----SSSMCLCLEWN 114 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g--~i-iw~~~~~~~-----~~~~v~~~~~~ 114 (331)
..|.++|.+... ...+ ..+...+.+.+|+|+ ++.|+..+.+ + .+ +|++.+++. ........+|+
T Consensus 176 ~~L~~~D~dG~~--~~~l-~~~~~~v~~p~wSPD----G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQN--AQSA-LSSPEPIISPAWSPD----GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCCC--ceEe-ccCCCCcccceEcCC----CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence 457777765442 3333 346678999999999 8888776643 2 24 889877643 23445678999
Q ss_pred CCCCeEEE-EecCCeEEEEEc--cccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEcc--CCCceeee
Q 020107 115 PSATSITV-GLSDGSVSIVSV--VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIR--ESPFKLAF 188 (331)
Q Consensus 115 ~~~~~l~~-~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~ 188 (331)
|+|+.|+. .+.+|...+|.+ ..+. ...+..+........|+| +++.++..+ .++...+|.+. ++. ...+
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~l 323 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGA-AQRV 323 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCc-eEEE
Confidence 99998764 566777666654 3333 334444444566788999 666655444 45666666554 333 2233
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
.. .........|+| ++++|+..+.++ .|.+||+.++. . .. ...........|+|++ ..++.++.+++.
T Consensus 324 t~---~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~-~-~~--lt~~~~~~~p~~spdg-~~l~~~~~~~g~ 394 (427)
T PRK02889 324 TF---TGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQ-V-TA--LTDTTRDESPSFAPNG-RYILYATQQGGR 394 (427)
T ss_pred ec---CCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCC-e-EE--ccCCCCccCceECCCC-CEEEEEEecCCC
Confidence 32 223344678999 999988776554 69999998753 2 22 1122334678999998 445555444433
Q ss_pred E-EEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 266 A-VVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 266 ~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
. ++-+.. .+.....+..+.+.+...+|+|-
T Consensus 395 ~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 395 SVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 3 333333 35666666667778888899885
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=5.8e-14 Score=109.36 Aligned_cols=243 Identities=16% Similarity=0.213 Sum_probs=171.1
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc------------CccEEEEEEcCCCC--eE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS------------SSMCLCLEWNPSAT--SI 120 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~------------~~~v~~~~~~~~~~--~l 120 (331)
.-|.++.|... |.+||+|..+|.+ ++.-.... .| ...|..+.|.++++ .+
T Consensus 26 diis~vef~~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 26 DIISAVEFDHY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred cceeeEEeecc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 45899999999 9999999999999 43322111 11 45678899998765 47
Q ss_pred EEEecCCeEEEEEccccceee---------------------------------eeee-ecccceeEEEeeCCCCCcEEE
Q 020107 121 TVGLSDGSVSIVSVVESQLEV---------------------------------LQQW-KAHEFELWATSFDVHQPHMVY 166 (331)
Q Consensus 121 ~~~~~dg~i~i~d~~~~~~~~---------------------------------~~~~-~~~~~~v~~~~~~~~~~~~l~ 166 (331)
+..+.|.+|++|.+.....+. .+.+ .+|...|.++.++. +...++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~l 180 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFL 180 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEe
Confidence 778889999999987532111 0111 24778899999996 666666
Q ss_pred EEcCCCeEEEEEccCCCceeeeecccCCC-----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-----Ccee--
Q 020107 167 TGSDDCKFSGWDIRESPFKLAFQNSKIHK-----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK-----PVNE-- 234 (331)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~-- 234 (331)
++ +|=.|-+|.+.-......+...+++. .-|++..|+|...+.|+-.+..|+|++-|+|.... .+.+
T Consensus 181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 65 48899999997544333333223333 45899999997788899999999999999995311 1111
Q ss_pred -------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc------------ce---eeee
Q 020107 235 -------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS------------LA---YGAD 292 (331)
Q Consensus 235 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~v---~~~~ 292 (331)
.+...-..|..+.|+++ +.++.+-..-.+++|++... .+++.++.-|.. .| ..++
T Consensus 260 edp~~rsffseiIsSISDvKFs~s--GryilsRDyltvk~wD~nme-~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHS--GRYILSRDYLTVKLWDLNME-AKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccC--CcEEEEeccceeEEEecccc-CCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 11122346888999999 55666667788999999665 566777765532 22 3578
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|+-++ ..++||| .....++++++.|.
T Consensus 337 ~sg~~---------~~v~TGs-y~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGND---------SYVMTGS-YNNVFRVFNLARGS 362 (433)
T ss_pred EcCCc---------ceEeccc-ccceEEEecCCCCc
Confidence 88887 6999999 99999999977664
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=3.3e-14 Score=116.80 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=151.2
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeee--ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC----------
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQW--KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP---------- 183 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------- 183 (331)
.+--++.|-.-|.|.+.|....+...+... .-....|+++.|-|.+...++++-.+|.+.+||.....
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 455689999999999999876322111111 11246799999999888889999999999999764210
Q ss_pred ----c--------------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE
Q 020107 184 ----F--------------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR 245 (331)
Q Consensus 184 ----~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 245 (331)
. +..+.. -.+.|...+|+| |+.+||+.+.||.+||||+.++ .+.-.+...-+...|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLC 337 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEe---ccccccceeEcC-CCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEE
Confidence 0 001111 245788999999 9999999999999999999974 333334566678999
Q ss_pred EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCc--------------cc----------
Q 020107 246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSS--------------LE---------- 301 (331)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--------------~~---------- 301 (331)
++|+||+ .+++++|.||-+.+|.+.+ .+++..-.+|.+.|..++|.|.--. ..
T Consensus 338 vcWSPDG-KyIvtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 338 VCWSPDG-KYIVTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred EEEcCCc-cEEEecCCcceEEEEEecc--ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 9999998 7788888888888888887 5888888999999999999942100 00
Q ss_pred --ccc-------------cCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 302 --GKR-------------KNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 302 --~~~-------------~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
+.. ..-.+.++| .|-++.+||+...++.
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVG-qDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVG-QDTQLCLWDLTEDVLV 457 (636)
T ss_pred CCCCcCCCcccccccccceEEEeeccc-ccceEEEEecchhhcc
Confidence 000 123688999 9999999999877653
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=6.9e-14 Score=123.24 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=148.0
Q ss_pred EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc----eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 111 LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF----ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
..+....+.++.++.+..+.+||...+.. ......... ...-+-+++ +.-++++|+.-+.|.+|+..... .+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn-~p 168 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDN-KP 168 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccC-Cc
Confidence 44455677899999999999999987643 333332221 112233444 56789999999999999998333 33
Q ss_pred e-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 187 A-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 187 ~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
. +. +|.+.|.++.++- ++.++++.++|.++|+|++.+.+... ....+|+++|+.+.|+|. .+++.+.|-..
T Consensus 169 ~~l~---GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n---~i~t~gedctc 240 (967)
T KOG0974|consen 169 IRLK---GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN---RIITVGEDCTC 240 (967)
T ss_pred ceec---ccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc---eeEEeccceEE
Confidence 3 44 4999999999999 99999999999999999999975544 335899999999999996 67788777777
Q ss_pred EEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 266 AVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++|... +..+..+.+|.. .+..++..++. ..++|++ .|+.+++|++..-.
T Consensus 241 rvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~---------~~~vT~g-~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 241 RVWGVN---GTQLEVYDEHSGKGIWKIAVPIGV---------IIKVTGG-NDSTLKLWDLNGRG 291 (967)
T ss_pred EEEecc---cceehhhhhhhhcceeEEEEcCCc---------eEEEeec-cCcchhhhhhhccc
Confidence 777544 455668888754 78999999887 5899999 99999999986543
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.2e-12 Score=112.97 Aligned_cols=208 Identities=16% Similarity=0.105 Sum_probs=128.0
Q ss_pred EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EE
Q 020107 95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MV 165 (331)
Q Consensus 95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l 165 (331)
+||...... +...+.+.+|+|+++.|+..+. ...|.+||+.+++...+..+ .......+|+| +++ ++
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---~g~~~~~~~Sp-DG~~l~ 263 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---RGINGAPSFSP-DGRRLA 263 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC---CCCccCceECC-CCCEEE
Confidence 677655432 3456888999999999888764 34799999988765433333 33455789999 555 44
Q ss_pred EEEcCCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCe--EEEEEecCCCCCceeeeeecC
Q 020107 166 YTGSDDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEY--LRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 166 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~ 240 (331)
++.+.+| .|++||+.+++.. .+.. +.......+|+| +++.|+..+ .++. |.++|+..+ . ... .....
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~-~lt~---~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g-~-~~~-lt~~g 335 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLT-RLTN---HFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGG-S-AER-LTFQG 335 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeE-ECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C-eEE-eecCC
Confidence 5555555 6999999887633 3333 445567789999 888877766 3455 555565553 2 222 12233
Q ss_pred CceEEEEECCCCCCeEEEEEecC--cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC--C
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHN--GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY--D 316 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~--d 316 (331)
......+|+|+++.++++...++ .+.+|++.. ++.. .+. +........|+|++ ++|+..+.. .
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~-~Lt-~~~~~~~p~~spdG---------~~i~~~s~~~g~ 402 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVR-TLT-PGSLDESPSFAPNG---------SMVLYATREGGR 402 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeE-ECC-CCCCCCCceECCCC---------CEEEEEEecCCc
Confidence 44557899999844333333333 355565543 2322 333 22245567999999 566665512 2
Q ss_pred CeEEEEcCCCc
Q 020107 317 RLLRIWMPESD 327 (331)
Q Consensus 317 ~~i~iW~~~~~ 327 (331)
+.|.+++++..
T Consensus 403 ~~L~~~~~~g~ 413 (433)
T PRK04922 403 GVLAAVSTDGR 413 (433)
T ss_pred eEEEEEECCCC
Confidence 46788887654
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=2.9e-11 Score=101.09 Aligned_cols=266 Identities=15% Similarity=0.091 Sum_probs=156.7
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcC
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNP 115 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~ 115 (331)
.+|.|.+.|..+.+ .+..+..+ ...-..+.|+|+ ++++++++.||.+ ++|+.+.+.. .....++++++
T Consensus 14 ~~~~v~viD~~t~~-~~~~i~~~-~~~h~~~~~s~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 14 GSGSVAVIDGATNK-VVARIPTG-GAPHAGLKFSPD----GRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp GGTEEEEEETTT-S-EEEEEE-S-TTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred CCCEEEEEECCCCe-EEEEEcCC-CCceeEEEecCC----CCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 58999999998875 45544332 233345779999 8999999999999 9999887752 44567899999
Q ss_pred CCCeEEEEec-CCeEEEEEccccceeeeeeeecc-------cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceee
Q 020107 116 SATSITVGLS-DGSVSIVSVVESQLEVLQQWKAH-------EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA 187 (331)
Q Consensus 116 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 187 (331)
+|++++++.. .+.+.++|.++.+. ++.+... ...+..+..+|....++++.-+.+.|.+.|....+....
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9999988865 89999999987643 5554422 345677877774444666666678898889876654322
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCcee-----------eeeecC---------------
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNE-----------TSVCLG--------------- 240 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~-----------~~~~~~--------------- 240 (331)
-.. . .........|+| ++++++++ ..++.|-++|.++.+..... ....|.
T Consensus 166 ~~i-~-~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 166 TTI-K-VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEE-E---TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred eee-c-ccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 221 1 345677889999 88877664 45667878887653211000 000111
Q ss_pred --------------------------CceEEEEECCCCCCeEEE---EEecCcEEEEEEcCcccceeEEeecC-Ccceee
Q 020107 241 --------------------------GGVWRIKHHPFIPGLVLA---ACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYG 290 (331)
Q Consensus 241 --------------------------~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~ 290 (331)
+.-.-+.-+|+++..++. .-..+.+.+++.... +.+.++... ...+..
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHHT--EEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccCCCcEec
Confidence 111335667776433333 123466667776663 555555422 235889
Q ss_pred eeecCCCCcccccccCcEEEEeecCCC-eEEEEcCCCccc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDR-LLRIWMPESDCL 329 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~-~i~iW~~~~~~~ 329 (331)
+.|+++|. ...+|.- ..+ .|.++|..+..+
T Consensus 321 ~ef~~dG~--------~v~vS~~-~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 321 MEFNPDGK--------EVWVSVW-DGNGAIVVYDAKTLKE 351 (369)
T ss_dssp EEE-TTSS--------EEEEEEE---TTEEEEEETTTTEE
T ss_pred cEECCCCC--------EEEEEEe-cCCCEEEEEECCCcEE
Confidence 99999996 5555555 444 899999988654
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4e-12 Score=109.84 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=145.9
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecCCCcc-----cCccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDITGEKI-----SSSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~~~~~-----~~~~v~~~~~ 113 (331)
...|.++|.+... .+.+ ..|...+...+|+|+ ++.|+..+. +..+ +|++.+++. ....+...+|
T Consensus 181 ~~~l~~~d~dg~~--~~~l-t~~~~~v~~p~wSpD----G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 181 IKRLAIMDQDGAN--VRYL-TDGSSLVLTPRFSPN----RQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRF 253 (435)
T ss_pred ceEEEEECCCCCC--cEEE-ecCCCCeEeeEECCC----CCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEE
Confidence 3478888886653 4443 457778999999999 888877654 2345 999877653 3455678899
Q ss_pred cCCCCeEE-EEecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC--eEEEEEccCCCceee
Q 020107 114 NPSATSIT-VGLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC--KFSGWDIRESPFKLA 187 (331)
Q Consensus 114 ~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~ 187 (331)
+|+|+.|+ +.+.++. |.+||+.+++. ..+..+........|+| +++.++..+ .+| .|.++|+..+.. ..
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EE
Confidence 99999875 4445554 77778877654 33444555567889999 666666555 333 688888876653 33
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.. +...+....|+| +++.|+....+ ..|.+||+.... ... ......+....|+|+++.+++++...+.
T Consensus 329 lt~---~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~--~~~--lt~~~~~~~p~~spDG~~i~~~~~~~~~ 400 (435)
T PRK05137 329 ISF---GGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSG--ERI--LTSGFLVEGPTWAPNGRVIMFFRQTPGS 400 (435)
T ss_pred eec---CCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCc--eEe--ccCCCCCCCCeECCCCCEEEEEEccCCC
Confidence 333 345567788999 88888876643 367888875532 222 2223357788999998433333332222
Q ss_pred ---EEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 265 ---FAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 265 ---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
..+|.+... +.....+.. .+.+...+|+|-
T Consensus 401 ~~~~~L~~~dl~-g~~~~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 401 GGAPKLYTVDLT-GRNEREVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCcceEEEEECC-CCceEEccC-CCCccCcccCCC
Confidence 234444332 222334432 345667788774
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2e-12 Score=110.23 Aligned_cols=279 Identities=13% Similarity=0.140 Sum_probs=197.4
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-------------ceEEeEeeecCcEeEEEEcC
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-------------NLELLYRMDTAGIFDIKWSP 76 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~ 76 (331)
....|++|.... .++|+|+ .||.+++..+.+... .+...+.+|+..|.-+.|+.
T Consensus 15 vkL~c~~WNke~---gyIAcgG----------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 15 VKLHCAEWNKES---GYIACGG----------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred ceEEEEEEcccC---CeEEecc----------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 345688898887 7999998 899999998865432 24456688999999999999
Q ss_pred CCCCCCCeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107 77 VGGNAGPFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA 147 (331)
Q Consensus 77 ~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 147 (331)
. .+.|-+...+|.| +|-+-.+.- .++.|.+++|+.+|..++....||.|.+=.++.++. --+.+++
T Consensus 82 ~----~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg 156 (1189)
T KOG2041|consen 82 N----NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKG 156 (1189)
T ss_pred c----cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcch
Confidence 8 8899999999999 998876543 468899999999999999999999998888776542 1223333
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-----eeeeec---ccCCCcceEEEEEe--------cCCCCEE
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-----KLAFQN---SKIHKMGVCCIASI--------PSDSNTL 211 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~---~~~~~~~v~~~~~~--------~~~~~~l 211 (331)
. ....+.|++ +...++.+-.+|.++++|....-. ...... +......|..+.|. | +...|
T Consensus 157 ~--~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~l 232 (1189)
T KOG2041|consen 157 Q--LLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRL 232 (1189)
T ss_pred h--eccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEE
Confidence 2 345789998 667777788889999999764210 000100 11123336666664 3 66789
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc------EEEEEEcCcccceeEEeecCC
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG------FAVVKVGGEKAEVLETYAKHG 285 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~ 285 (331)
+++-..|.+.+-.-.+...|+.. ..+-.+..+.|+++| ..++++|.+.. ...+.....-+..+.+++...
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~---dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg 308 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVV---DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG 308 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEE---ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEecCC
Confidence 99999999988766655455543 445778999999995 44444443211 113333333377888888888
Q ss_pred cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..|++++|-..+ -.+|-+- |+.|++=++.
T Consensus 309 ~~It~lsWEg~g---------LriA~Av--dsfiyfanIR 337 (1189)
T KOG2041|consen 309 SCITGLSWEGTG---------LRIAIAV--DSFIYFANIR 337 (1189)
T ss_pred ceeeeeEEcCCc---------eEEEEEe--cceEEEEeec
Confidence 899999998887 4566554 7776665443
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=3.8e-12 Score=109.94 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=146.2
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~ 113 (331)
...|.++|.+... .+.+ ..+...+...+|+|+ ++.|+.+...+ .+ +|++.+++. ....+.+++|
T Consensus 169 ~~~l~~~d~~g~~--~~~l-~~~~~~~~~p~~Spd----g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGAN--PQTI-TRSREPILSPAWSPD----GQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCCC--CEEe-ecCCCceecccCCCC----CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEE
Confidence 4467888876543 3444 335567889999999 88888776443 44 888877643 2345667899
Q ss_pred cCCCCeEEEE-ecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC--eEEEEEccCCCceee
Q 020107 114 NPSATSITVG-LSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC--KFSGWDIRESPFKLA 187 (331)
Q Consensus 114 ~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~ 187 (331)
+|+++.|+.. +.++ .|++|++.+++. ..+..+........|+| +++.|+..+ .++ .|.++|+.+++. ..
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQL---TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCE---EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 9999987654 4444 588889887653 23333444455678998 666665544 333 577788876653 33
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.. +...+....|+| ++++++..+.++ .|.+||+.+.. ... ...........|+|++ ..++.+...++
T Consensus 317 l~~---~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~--~~~--l~~~~~~~~p~~spdg-~~l~~~~~~~~ 387 (417)
T TIGR02800 317 LTF---RGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGG--ERV--LTDTGLDESPSFAPNG-RMILYATTRGG 387 (417)
T ss_pred eec---CCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCC--eEE--ccCCCCCCCceECCCC-CEEEEEEeCCC
Confidence 333 455677889999 888888888775 78888887632 222 1112234556899998 55666655555
Q ss_pred EEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 265 FAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
...+.+....+.....+..+.+.+...+|+
T Consensus 388 ~~~l~~~~~~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 388 RGVLGLVSTDGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred cEEEEEEECCCceeeECCCCCCCcCCCCCC
Confidence 444444444355555555445555555553
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=1.1e-12 Score=99.66 Aligned_cols=160 Identities=19% Similarity=0.340 Sum_probs=107.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE--
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA-- 88 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-- 88 (331)
.-..+.|+|.+ ++|++-...........--|...+|.++....+...+.....++|.+++|+|+ ++.||+.
T Consensus 7 ~~~~~~W~~~G---~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~----g~~favi~g 79 (194)
T PF08662_consen 7 DDAKLHWQPSG---DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN----GNEFAVIYG 79 (194)
T ss_pred ceEEEEecccC---CEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC----CCEEEEEEc
Confidence 34467788877 66665542110111111234566777755544555553334567999999999 7776554
Q ss_pred cCCccE-EEecCCCcc---cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI---SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
..+..+ +|++..... +...+..+.|+|+|++|++++. .|.|.+||.++.+ .+.... |. .++.++|+| +
T Consensus 80 ~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~~-~~t~~~WsP-d 154 (194)
T PF08662_consen 80 SMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-HS-DATDVEWSP-D 154 (194)
T ss_pred cCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--Eeeccc-cC-cEEEEEEcC-C
Confidence 345666 999975432 4667889999999999999874 4779999998653 355544 33 478999999 7
Q ss_pred CcEEEEEcC------CCeEEEEEccCCC
Q 020107 162 PHMVYTGSD------DCKFSGWDIRESP 183 (331)
Q Consensus 162 ~~~l~~~~~------dg~i~i~d~~~~~ 183 (331)
+++++++.. |..++||+.. |+
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-Ce
Confidence 888888763 7888999986 44
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.4e-12 Score=109.01 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=128.4
Q ss_pred EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE
Q 020107 95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY 166 (331)
Q Consensus 95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 166 (331)
+++...... +...+.+.+|+|||+.|+..+. +..|.+|++.+++...+..+.++ +...+|+| +++.|+
T Consensus 183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SP-DG~~La 258 (429)
T PRK03629 183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSP-DGSKLA 258 (429)
T ss_pred EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECC-CCCEEE
Confidence 666554432 3457889999999999886543 45799999988765444444433 45689999 666555
Q ss_pred -EEcCCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEE--EecCCCCCceeeeeecC
Q 020107 167 -TGSDDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVW--DVRSISKPVNETSVCLG 240 (331)
Q Consensus 167 -~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iw--d~~~~~~~~~~~~~~~~ 240 (331)
+.+.+| .|.+||+.+++... +.. +...+....|+| +++.|+..+. ++...+| |+..+ .... +....
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~---~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~-lt~~~ 330 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTD---GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG--APQR-ITWEG 330 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccC---CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC--CeEE-eecCC
Confidence 445455 58899998876433 332 345678899999 8888876664 4455555 55443 2222 23344
Q ss_pred CceEEEEECCCCCCeEEEEEec-Cc--EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 241 GGVWRIKHHPFIPGLVLAACMH-NG--FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
.......|+|++ ..++..+.+ +. +.++++.. ++ ...+... .......|+|++ ++|+..+ .++
T Consensus 331 ~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~--g~-~~~Lt~~-~~~~~p~~SpDG---------~~i~~~s-~~~ 395 (429)
T PRK03629 331 SQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT--GG-VQVLTDT-FLDETPSIAPNG---------TMVIYSS-SQG 395 (429)
T ss_pred CCccCEEECCCC-CEEEEEEccCCCceEEEEECCC--CC-eEEeCCC-CCCCCceECCCC---------CEEEEEE-cCC
Confidence 456678999998 444444433 22 34445433 22 2333321 223467899999 6788777 665
Q ss_pred e---EEEEcCCCc
Q 020107 318 L---LRIWMPESD 327 (331)
Q Consensus 318 ~---i~iW~~~~~ 327 (331)
. +.+++++..
T Consensus 396 ~~~~l~~~~~~G~ 408 (429)
T PRK03629 396 MGSVLNLVSTDGR 408 (429)
T ss_pred CceEEEEEECCCC
Confidence 3 778887544
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9e-12 Score=107.69 Aligned_cols=209 Identities=15% Similarity=0.103 Sum_probs=130.6
Q ss_pred EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE-E
Q 020107 95 LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM-V 165 (331)
Q Consensus 95 iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l 165 (331)
+++..+... +...+.+.+|+|+|+.|+..+. +..|.+||+.+++... +..+...+...+|+| +++. +
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SP-DG~~la 261 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSP-DGRKVV 261 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECC-CCCEEE
Confidence 566544432 4567899999999999887764 4689999998876433 333455677889999 5554 4
Q ss_pred EEEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecC
Q 020107 166 YTGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 166 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
++.+.++. |.+||+.++.. ..+.. +........|+| +++.|+..+. ++ .|.++|+... . ... +....
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~---~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~-lt~~~ 333 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTD---SPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGS-N-PRR-ISFGG 333 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccC---CCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCC-C-eEE-eecCC
Confidence 56666654 77778887753 33333 455677899999 8888877663 33 5777787653 2 222 23345
Q ss_pred CceEEEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---
Q 020107 241 GGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD--- 316 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d--- 316 (331)
+.+....|+|++ ..++....+ +...++.+... +.....+.. ...+....|+|++ ++|+..+...
T Consensus 334 ~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~-~~~~~~lt~-~~~~~~p~~spDG---------~~i~~~~~~~~~~ 401 (435)
T PRK05137 334 GRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPD-GSGERILTS-GFLVEGPTWAPNG---------RVIMFFRQTPGSG 401 (435)
T ss_pred CcccCeEECCCC-CEEEEEEcCCCceEEEEEECC-CCceEeccC-CCCCCCCeECCCC---------CEEEEEEccCCCC
Confidence 567778999998 444444333 32334333322 222233322 2346788999998 5665544122
Q ss_pred --CeEEEEcCCCc
Q 020107 317 --RLLRIWMPESD 327 (331)
Q Consensus 317 --~~i~iW~~~~~ 327 (331)
..|.+.+++.+
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 35778887654
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.3e-13 Score=106.83 Aligned_cols=218 Identities=19% Similarity=0.183 Sum_probs=150.2
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccEEEecCCCccc-----CccEEEEEEcCCCCeEEEE-ecCCeEEEEEccccceeeeee
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGLLRDITGEKIS-----SSMCLCLEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQ 144 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~ 144 (331)
-..|||+ ++++|+++.-..++.|..+.+.+ -..|.-+.|..+..+++++ ..++.|.+|++...+. ...
T Consensus 13 ~c~fSp~----g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ck 86 (447)
T KOG4497|consen 13 FCSFSPC----GNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCK 86 (447)
T ss_pred ceeECCC----CCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee--EEE
Confidence 3579999 99999999886669998888775 3556778899888776555 5588999999998765 556
Q ss_pred eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107 145 WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224 (331)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd 224 (331)
+.....++.+++|+|++.+.+.+...+-.|.+|.+.+.+.. .++. .+..+..++|+| ++++.+..+.-.....+.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~---pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPH---PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-Eecc---cccCceeEEECC-CCceeeeeecccHHHHHH
Confidence 77778889999999955578888889999999999987643 3333 345568899999 999988887532222222
Q ss_pred ecCCC--CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107 225 VRSIS--KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 225 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
+...+ ..+.. +....-..+.+.|+|++ . .++ +|+---+ -.+..+. ..-.+..++|+|.+
T Consensus 162 i~~c~~W~ll~~-f~~dT~DltgieWsPdg-~-~la--------Vwd~~Le--ykv~aYe-~~lG~k~v~wsP~~----- 222 (447)
T KOG4497|consen 162 ISSCKAWILLKE-FKLDTIDLTGIEWSPDG-N-WLA--------VWDNVLE--YKVYAYE-RGLGLKFVEWSPCN----- 222 (447)
T ss_pred HHhhHHHHHHHh-cCCCcccccCceECCCC-c-EEE--------Eecchhh--heeeeee-eccceeEEEecccc-----
Confidence 21100 11111 22334456789999995 3 222 2322111 1111121 12467889999988
Q ss_pred cccCcEEEEeecCCCeEEEEc
Q 020107 303 KRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~ 323 (331)
++|+.|+ .|+.+|+-+
T Consensus 223 ----qflavGs-yD~~lrvln 238 (447)
T KOG4497|consen 223 ----QFLAVGS-YDQMLRVLN 238 (447)
T ss_pred ----ceEEeec-cchhhhhhc
Confidence 7999999 999998744
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=1.8e-12 Score=99.02 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=154.1
Q ss_pred eecCcceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec------CcEeEEEEcCCCC
Q 020107 7 ELDGNADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT------AGIFDIKWSPVGG 79 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~ 79 (331)
.-...+..+.|+-...++. .|+-+- ..|.|.+|........ ..+++-. ..-.++.|++.
T Consensus 67 ~dts~~~dm~w~~~~~~g~~~l~~a~----------a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~~~~lslD~~~~-- 132 (339)
T KOG0280|consen 67 TDTSTEFDMLWRIRETDGDFNLLDAH----------ARGQIQLYRNDEDESS--VHLRGLSSKKISVVEALSLDISTS-- 132 (339)
T ss_pred ecccccceeeeeeccCCccceeeecc----------ccceEEEEeeccceee--eeecccchhhhhheeeeEEEeecc--
Confidence 3344566677776655555 344443 6999999988765421 1111111 12457889998
Q ss_pred CCCCeEEEEcCCccE---------EEecCCCcccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107 80 NAGPFLAQADADGGL---------LRDITGEKISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHE 149 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i---------iw~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 149 (331)
+..++++..+|.+ +-..++-+.|.-++...+|+... +.+++|+.|+.+.-||++..+.-.....+.|.
T Consensus 133 --~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 133 --GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred --CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence 8889999999988 44455566788889989987644 57899999999999999954322233356788
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
..|.++.-+|..+.++++|+.|-.|++||.|+. +++..-. -.+.|..+.++|.....++.++.-.-.+|-+....
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 999999999888999999999999999999954 3333322 36889999999965555555555555788888764
Q ss_pred CCC---ceeeeeecCCceEEEEEC
Q 020107 229 SKP---VNETSVCLGGGVWRIKHH 249 (331)
Q Consensus 229 ~~~---~~~~~~~~~~~v~~~~~~ 249 (331)
... .......|.+-++.-.|.
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred ccchheeeeccccccceeeccccc
Confidence 333 222234555555666663
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=3.4e-12 Score=99.66 Aligned_cols=245 Identities=13% Similarity=0.145 Sum_probs=185.8
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc-------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI-------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
...++|.+.|++...-|. ..-+.+.+.|.++ +|--.. ++. -+.++.++++.++...|++|-..|++.
T Consensus 18 ~~~eG~~d~vn~~~l~~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhcCchhhhhhheeccC----CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345788889999999998 7789999999999 775433 332 368899999999999999999999999
Q ss_pred EEEccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107 131 IVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 131 i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 208 (331)
-+.+.. ++....+.+..|...+..+-|+. ....+++.+.|..+.---.+.+.....+.. ....+++.+.-
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~----~~~~t~~~~d~--- 165 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF----ETPASALQFDA--- 165 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe----eccCCCCceee---
Confidence 988765 34445667778999999999996 778899999888876555555544333332 12222333322
Q ss_pred CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107 209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
.+...|...|.|..-.+......+...+.+|.+++.+++|.|.. ++++++..+..+.+|++-.. ......+.+|...|
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGR-KGTAYELQGHNDKV 243 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCC-cceeeeeccchhhh
Confidence 15666767777777777654455555578999999999999975 77778778888899999876 34455677899999
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
..+...+.- +.+.+++ .||.|.+|+++...
T Consensus 244 ~~l~~~~~t---------~~l~S~~-edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 244 QALSYAQHT---------RQLISCG-EDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhh---------eeeeecc-CCCeEEEEecccee
Confidence 999888776 7899999 99999999997653
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.9e-11 Score=102.04 Aligned_cols=200 Identities=20% Similarity=0.222 Sum_probs=152.1
Q ss_pred CCeEEEEcCCccE-EEecCCCccc---------CccEEEEEEc------C--------------CCCeEEEEecCCeEEE
Q 020107 82 GPFLAQADADGGL-LRDITGEKIS---------SSMCLCLEWN------P--------------SATSITVGLSDGSVSI 131 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~i 131 (331)
..++|....||.+ +|+....+.+ .+.+.+..|. | +...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 6799999999999 9999887763 3344444442 2 2336888889999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
|+...++......-..|.+.|.++.++. +-..|.+++.|+.+..|+.........+.. ....+.+++++| ++..+
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcC-CCCEE
Confidence 9999987654444467999999999985 778999999999999999999887778877 678899999999 89999
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC-----CCCeEEEEEecCcEEEEEEcCcc--cceeEEeecC
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF-----IPGLVLAACMHNGFAVVKVGGEK--AEVLETYAKH 284 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h 284 (331)
++++ +.|++||+.+. + +...+.+|.++|.++.|--. |...+-....+..+.+|.+.... ......+...
T Consensus 160 ~~as--~~ik~~~~~~k-e-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~ 235 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETK-E-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVP 235 (541)
T ss_pred Eecc--ceEEEEEccCc-e-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccC
Confidence 9987 78999999984 3 33447999999999999876 43445555567777788876632 2333444433
Q ss_pred Ccceee
Q 020107 285 GSLAYG 290 (331)
Q Consensus 285 ~~~v~~ 290 (331)
..+|+.
T Consensus 236 dipv~~ 241 (541)
T KOG4547|consen 236 DIPVTS 241 (541)
T ss_pred CCCeEe
Confidence 334433
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3e-11 Score=104.54 Aligned_cols=230 Identities=11% Similarity=0.076 Sum_probs=139.9
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-c--cE-EEecCCCcc-----cCccEEEEEEcC
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-G--GL-LRDITGEKI-----SSSMCLCLEWNP 115 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g--~i-iw~~~~~~~-----~~~~v~~~~~~~ 115 (331)
.|.++|.+... ...+ ..+...+....|+|+ ++.|+..+.+ + .+ +|++.+++. ....+....|+|
T Consensus 180 ~l~~~d~~g~~--~~~l-~~~~~~~~~p~wSpD----G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGAR--AVTL-LQSREPILSPRWSPD----GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCC--ceEE-ecCCCceeeeeECCC----CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC
Confidence 47777777653 3333 345667899999999 8888765543 3 34 788876543 123445689999
Q ss_pred CCCeEEE-EecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEEccCCCceeeee
Q 020107 116 SATSITV-GLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 116 ~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~ 189 (331)
+|+.|+. ...+| .|.++|+.+++.. .+..+........|+| +++.++ +...++ .|.++|+.+++.. .+.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt 327 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS---RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVT 327 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE---EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-Eee
Confidence 9998774 44444 6888899877542 3333444566788999 555554 443444 5777788776633 232
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecC-C--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec-CcE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYD-E--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-NGF 265 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~ 265 (331)
. .........|+| +++.++..+.+ + .|.++|+.++.. .. ...........|+|++ ..++.+... +..
T Consensus 328 ~---~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~--~~--lt~~~~~~~p~~spdg-~~i~~~~~~~g~~ 398 (430)
T PRK00178 328 F---VGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV--RI--LTDTSLDESPSVAPNG-TMLIYATRQQGRG 398 (430)
T ss_pred c---CCCCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE--EE--ccCCCCCCCceECCCC-CEEEEEEecCCce
Confidence 2 122334578999 88888776643 3 578889887432 22 1122223356899998 444444433 333
Q ss_pred EEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
.++.+... +.....+..+.+.+...+|+|-
T Consensus 399 ~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 399 VLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 34444333 4444455555667778888874
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=6.1e-09 Score=87.26 Aligned_cols=256 Identities=14% Similarity=0.131 Sum_probs=157.7
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+..++++|.. ++|.+..... ..+|.|..|++......+..+.... ......++++|+ +++|++
T Consensus 37 ~~Ps~l~~~~~~---~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~----g~~l~v 103 (345)
T PF10282_consen 37 ENPSWLAVSPDG---RRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD----GRFLYV 103 (345)
T ss_dssp SSECCEEE-TTS---SEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT----SSEEEE
T ss_pred CCCceEEEEeCC---CEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC----CCEEEE
Confidence 345556666555 7777776110 1378999999987632444443333 234668999999 888888
Q ss_pred EcC-CccE-EEecCCC-c-------------------ccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc--eeee
Q 020107 88 ADA-DGGL-LRDITGE-K-------------------ISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ--LEVL 142 (331)
Q Consensus 88 ~~~-dg~i-iw~~~~~-~-------------------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~~ 142 (331)
+.. +|.+ ++++... . .......++.|+|+++++++... ...|.+|++.... +...
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 875 6666 6665542 1 11345678999999998877654 6689999998754 4333
Q ss_pred eeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc--CCCc--eeeeeccc---CCCcceEEEEEecCCCCEEEEE
Q 020107 143 QQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR--ESPF--KLAFQNSK---IHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 143 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
..+. ......+.++|+|+.....++.-.++.|.++++. .+.. ...+...+ ........|.++| ++++|++.
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvs 262 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVS 262 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEE
Confidence 3332 2345678999999444445666678899999998 3321 11122111 0122678999999 88887776
Q ss_pred e-cCCeEEEEEecCCCCCceee--eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEE
Q 020107 215 S-YDEYLRVWDVRSISKPVNET--SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLET 280 (331)
Q Consensus 215 ~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 280 (331)
. .++.|.+|++......+... ..........++++|++ .+++++. ..+.+.++++...++.+...
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 5 56789999995432223221 12224458999999998 4455444 66788899987665555444
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=2.5e-10 Score=105.78 Aligned_cols=280 Identities=15% Similarity=0.155 Sum_probs=179.8
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEE----eccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLF----NVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
+.+-++.|.+.. +.++++. .+|.|.+. +..... +..+ ..-..+|.+++|||| +++|
T Consensus 76 ~~ivs~~yl~d~---~~l~~~~----------~~Gdi~~~~~~~~~~~~~--~E~V-G~vd~GI~a~~WSPD----~Ell 135 (928)
T PF04762_consen 76 DKIVSFQYLADS---ESLCIAL----------ASGDIILVREDPDPDEDE--IEIV-GSVDSGILAASWSPD----EELL 135 (928)
T ss_pred CcEEEEEeccCC---CcEEEEE----------CCceEEEEEccCCCCCce--eEEE-EEEcCcEEEEEECCC----cCEE
Confidence 346666777766 5666665 69999999 444432 4443 445678999999999 8999
Q ss_pred EEEcCCccE-----EEecC-----------------------CCccc--------------------------CccEEEE
Q 020107 86 AQADADGGL-----LRDIT-----------------------GEKIS--------------------------SSMCLCL 111 (331)
Q Consensus 86 ~~~~~dg~i-----iw~~~-----------------------~~~~~--------------------------~~~v~~~ 111 (331)
+..+.++++ -|+.- ..+.| ...-..+
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 999999888 11110 00000 1123568
Q ss_pred EEcCCCCeEEEEec---C---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC---CCeEEEEEccCC
Q 020107 112 EWNPSATSITVGLS---D---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD---DCKFSGWDIRES 182 (331)
Q Consensus 112 ~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 182 (331)
+|..||+++|+.+- . ..++||+-+ |.+... ...-.+--.+++|.| .+++|++... ...|.+|. |+|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st--SE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE-rNG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST--SEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFE-RNG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec--cccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEe-cCC
Confidence 89999999998875 2 578999976 443222 222233345789999 8898888764 34455555 445
Q ss_pred Cceeeeecc-cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE
Q 020107 183 PFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 183 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
-....|... ......|..+.|++ ++..||.--.|. |.+|-..+-.=-+++ +.......+..+.|+|..+..+.+.+
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 445555552 13567899999999 999999987665 999988874211222 11223344556999998877777777
Q ss_pred ecCcEEEEEEc----Ccc------cceeEEee-----------------------cCCcceeeeeecCCCCcccccccCc
Q 020107 261 MHNGFAVVKVG----GEK------AEVLETYA-----------------------KHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 261 ~~~~~~~~~~~----~~~------~~~~~~~~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
..+.+..+++. ... ...+..+. .-...|.+++|+++. .
T Consensus 369 ~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~---------~ 439 (928)
T PF04762_consen 369 SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN---------S 439 (928)
T ss_pred cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC---------C
Confidence 65666554432 110 00111111 124578999999998 3
Q ss_pred EEEEeecCCCeEEEEcCCC
Q 020107 308 LVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~ 326 (331)
.++... .||.|.+|....
T Consensus 440 ~~avl~-~d~~l~~~~~~~ 457 (928)
T PF04762_consen 440 RFAVLT-SDGSLSIYEWDL 457 (928)
T ss_pred eEEEEE-CCCCEEEEEecC
Confidence 577777 799999998544
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.2e-11 Score=102.02 Aligned_cols=231 Identities=10% Similarity=0.086 Sum_probs=136.9
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-Ccc--E-EEecCCCcc-----cCccEEEEEEcC
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGG--L-LRDITGEKI-----SSSMCLCLEWNP 115 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~--i-iw~~~~~~~-----~~~~v~~~~~~~ 115 (331)
.|.++|.+... .+.+ ..+...+....|+|+ ++.|+..+. ++. + ++++.+++. .........|+|
T Consensus 199 ~l~i~d~dG~~--~~~l-~~~~~~~~~p~wSPD----G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYN--EQML-LRSPEPLMSPAWSPD----GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCC--ceEe-ecCCCcccCceECCC----CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC
Confidence 56666766653 3333 345667889999999 887776543 333 3 777766543 123345689999
Q ss_pred CCCeEEE-EecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEEccCCCceeeee
Q 020107 116 SATSITV-GLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 116 ~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~ 189 (331)
+|+.|+. ...+|. |.++|+.+++. ..+..+.......+|+| +++.++ +...++ .|.++|+.+++.. .+.
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~---~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt 346 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKAL---TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLT 346 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCe---EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEe
Confidence 9998765 455664 77778877654 33333444567789999 555554 444444 4666677766533 332
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
. .........|+| ++++|+..+. ++ .|.++|+.++. ... +... .......|+|++..+++++..++.-.
T Consensus 347 ~---~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~--~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 347 F---EGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGA--MQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred c---CCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCC--eEE-ccCC-CCCCCceECCCCCEEEEEEecCCceE
Confidence 2 222234578999 8888777654 34 35556766542 222 1111 12234579999844444443333333
Q ss_pred EEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 267 VVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
++-+. ..+.....+..+.+.+...+|+|-
T Consensus 419 l~~~~-~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 419 LAAVS-IDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEE-CCCCceEECcCCCCCcCCCccCCC
Confidence 33333 236666667666667788888874
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.3e-11 Score=103.72 Aligned_cols=181 Identities=12% Similarity=-0.024 Sum_probs=114.2
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC---CCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD---DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS 203 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 203 (331)
..|.++|..... ...+..+...+.+.+|+| +++.|+..+. ...|.+||+.+++... +.. ....+....|
T Consensus 176 ~~L~~~D~dG~~---~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~---~~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQN---AQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN---FKGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCCC---ceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eec---CCCCccceEE
Confidence 467777765432 233445667889999999 6677766553 2469999999886433 332 3445678999
Q ss_pred ecCCCCEEE-EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 204 IPSDSNTLL-TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 204 ~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
+| +++.|+ +.+.++...+|.+......... +..+.+......|+|++..+++++...+...+|.+....+. ...+.
T Consensus 248 SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt 324 (427)
T PRK02889 248 SP-DGRTLAVALSRDGNSQIYTVNADGSGLRR-LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT 324 (427)
T ss_pred CC-CCCEEEEEEccCCCceEEEEECCCCCcEE-CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe
Confidence 99 887775 5677888777776532233333 23445556778999998444444333355667777543222 22222
Q ss_pred cCCcceeeeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCCcc
Q 020107 283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPESDC 328 (331)
Q Consensus 283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~~~ 328 (331)
.+.......+|+|++ ++|+..+ .++ .|.+||++++.
T Consensus 325 ~~g~~~~~~~~SpDG---------~~Ia~~s-~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 325 FTGSYNTSPRISPDG---------KLLAYIS-RVGGAFKLYVQDLATGQ 363 (427)
T ss_pred cCCCCcCceEECCCC---------CEEEEEE-ccCCcEEEEEEECCCCC
Confidence 222334467899999 6777666 443 69999998764
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.3e-09 Score=90.74 Aligned_cols=264 Identities=14% Similarity=0.191 Sum_probs=164.6
Q ss_pred CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-------CCc
Q 020107 20 QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-------ADG 92 (331)
Q Consensus 20 ~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-------~dg 92 (331)
.++.|+++|.+. +..++|++..... ... ......++++.|+|- +.+|.+-- ...
T Consensus 42 ~S~~G~lfA~~~-----------~~~v~i~~~~~~~--~~l--t~~~~~~~~L~fSP~----g~yL~T~e~~~i~~~~~~ 102 (566)
T KOG2315|consen 42 YSNNGRLFAYSD-----------NQVVKVFEIATLK--VVL--CVELKKTYDLLFSPK----GNYLLTWEPWAIYGPKNA 102 (566)
T ss_pred EcCCCcEEEEEc-----------CCeEEEEEccCCc--EEE--Eeccceeeeeeeccc----ccccccccccccccCCCC
Confidence 344458999997 8999999998875 211 222237899999998 67776521 111
Q ss_pred cE----EEecCCCcc----------------------------------------------cCccEEEEEEcCCCC--eE
Q 020107 93 GL----LRDITGEKI----------------------------------------------SSSMCLCLEWNPSAT--SI 120 (331)
Q Consensus 93 ~i----iw~~~~~~~----------------------------------------------~~~~v~~~~~~~~~~--~l 120 (331)
.. +|++.+... +...+..+.++|... .+
T Consensus 103 ~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 103 SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence 11 666655211 233445555665422 12
Q ss_pred EE-----EecCCeEEEEEcccccee---eeeeeecccceeEEEeeCCCCCcEEEEEcC-----------CCeEEEEEccC
Q 020107 121 TV-----GLSDGSVSIVSVVESQLE---VLQQWKAHEFELWATSFDVHQPHMVYTGSD-----------DCKFSGWDIRE 181 (331)
Q Consensus 121 ~~-----~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~ 181 (331)
|+ .+.-+.|++|........ ..+.|- ...=-.+.|++....+|+.++. ..++++.++..
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 22 123445666665521110 111111 1112367788644445544432 24788888874
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEE--EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT--GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
..+...+. ..++|.++.|+| ++.-+++ |-+--++.|||++. .++. .-..++=+++-|+|.+ .+++.+
T Consensus 261 ~s~~V~L~----k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~--~~v~---df~egpRN~~~fnp~g-~ii~lA 329 (566)
T KOG2315|consen 261 ESVSVPLL----KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG--KPVF---DFPEGPRNTAFFNPHG-NIILLA 329 (566)
T ss_pred ceEEEecC----CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC--CEeE---eCCCCCccceEECCCC-CEEEEe
Confidence 33333333 488999999999 7766555 44667899999985 4554 3456778899999998 666666
Q ss_pred Eec---CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec-----CCCeEEEEcCCCcc
Q 020107 260 CMH---NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF-----YDRLLRIWMPESDC 328 (331)
Q Consensus 260 ~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~~ 328 (331)
|.. +.+.+||+.+ .+++..+..-. -+-++|+|+| ++++|+.. .|+.++||+.....
T Consensus 330 GFGNL~G~mEvwDv~n--~K~i~~~~a~~--tt~~eW~PdG---------e~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPN--RKLIAKFKAAN--TTVFEWSPDG---------EYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ecCCCCCceEEEeccc--hhhccccccCC--ceEEEEcCCC---------cEEEEEeccccEEecCCeEEEEecCce
Confidence 654 5678898887 47777776543 3568999999 68888874 47899999986543
No 253
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.41 E-value=1.7e-10 Score=87.44 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=160.6
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCC-CCCCeEEEEcCCccE-EEecCCCcccCc----cEEEEEEcC
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGG-NAGPFLAQADADGGL-LRDITGEKISSS----MCLCLEWNP 115 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~~~dg~i-iw~~~~~~~~~~----~v~~~~~~~ 115 (331)
....+-+|++.+..+.+..++ ..|.|-|..- +.-.+||.|+..|.. +|...+.+.|-. ....+....
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 466788888887764555554 3355555310 004589999999999 999998776522 112222211
Q ss_pred ----CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeec
Q 020107 116 ----SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQN 190 (331)
Q Consensus 116 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~ 190 (331)
..-.+..++.|.++++.+++.+......... .-.+.++++++ ++.++++.++...|..|.+..... +..+..
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeecc--ccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 1223677788899999888765332222121 12378999998 889999999999999999976442 212222
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee---eeecCCceEEEEECCCCC-CeEEEEEecCcEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIP-GLVLAACMHNGFA 266 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 266 (331)
....+.-.+..|+. ....+|++..||++.|||+|....|..+. ...|.+.+..+.|++.+. .+|+.+-.-+.+.
T Consensus 200 -a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 -APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred -cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 33455667889998 88899999999999999999976665442 245889999999998653 3455555556778
Q ss_pred EEEEcCcccceeEE-----eecCC-cceeeeeecCCCC
Q 020107 267 VVKVGGEKAEVLET-----YAKHG-SLAYGADWQRGRS 298 (331)
Q Consensus 267 ~~~~~~~~~~~~~~-----~~~h~-~~v~~~~~~~~~~ 298 (331)
+.++++...-.+.. +..|. ..|++..|+.++.
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 88887742111111 11232 3477788887764
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.5e-11 Score=102.30 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=142.6
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCcc
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGG 93 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 93 (331)
.+.++..+ .+++.+|+ ...|+-++++.+. +..-+....++++++..++. ..+|++|+.+|.
T Consensus 138 Dm~y~~~s--cDly~~gs-----------g~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~----hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 138 DMKYHKPS--CDLYLVGS-----------GSEVYRLNLEQGR--FLNPFETDSGELNVVSINEE----HGLLACGTEDGV 198 (703)
T ss_pred cccccCCC--ccEEEeec-----------CcceEEEEccccc--cccccccccccceeeeecCc----cceEEecccCce
Confidence 34444333 36777776 6678888888774 33333445688999999999 779999999999
Q ss_pred E-EEecCCCcc------------c-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 94 L-LRDITGEKI------------S-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 94 i-iw~~~~~~~------------~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+ .||...... + ...|+++.|+.+|-.+++|+.+|.+.|||+++.++. +..-.+...+|..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKL 277 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeee
Confidence 9 999875432 1 234899999999999999999999999999987642 22233456788999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.|.+.+..--+...+...++|||-.+++....+.. ...++.+++-| ++.+++++-.+..+..|=+...
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeec-CCceEEEecCCCcceeEEcccc
Confidence 99875433333344578899999999987666654 56699999999 8889999988888887776653
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=2.7e-10 Score=95.40 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=122.4
Q ss_pred CeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107 118 TSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM 196 (331)
Q Consensus 118 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 196 (331)
++++ +-..+|.|.+.|..+.+. +..+......-..+.++| +++++++++.||.|.++|+.+.+.+..+.. ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV----GG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-----SS
T ss_pred cEEEEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec----CC
Confidence 3443 445689999999988754 677765444445577898 788888889999999999999998888876 55
Q ss_pred ceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee------cCCceEEEEECCCCCCeEEEEEe-cCcEEEE
Q 020107 197 GVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC------LGGGVWRIKHHPFIPGLVLAACM-HNGFAVV 268 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 268 (331)
....+++++ ++++++++. .++.+.++|.++. +++..+... ...++..+..+|.. ..++++-. .+.+.++
T Consensus 79 ~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 79 NPRGIAVSP-DGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEE
T ss_pred CcceEEEcC-CCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEE
Confidence 678899999 998888765 6899999999985 555542211 23467788888886 43444444 3554444
Q ss_pred EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+..+. ..+..+.........+..|.|++ ++++.+.+.+..|-++|.+++.
T Consensus 156 dy~d~-~~~~~~~i~~g~~~~D~~~dpdg---------ry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 156 DYSDP-KNLKVTTIKVGRFPHDGGFDPDG---------RYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp ETTTS-SCEEEEEEE--TTEEEEEE-TTS---------SEEEEEEGGGTEEEEEETTTTE
T ss_pred Eeccc-cccceeeecccccccccccCccc---------ceeeecccccceeEEEeeccce
Confidence 44443 22222233334566789999998 5665554478899999988764
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.9e-10 Score=96.80 Aligned_cols=239 Identities=12% Similarity=0.008 Sum_probs=134.3
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe---EEEEcCCccE---EEecCCCcc-----cCccEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF---LAQADADGGL---LRDITGEKI-----SSSMCLCL 111 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---l~~~~~dg~i---iw~~~~~~~-----~~~~v~~~ 111 (331)
...|.+.|.+... .+.+ ......+..-+|+|+ ++. +++...+|.. +.++.+++. ........
T Consensus 164 ~~~l~~~d~dG~~--~~~l-t~~~~~~~sP~wSPD----G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p 236 (428)
T PRK01029 164 QGELWSVDYDGQN--LRPL-TQEHSLSITPTWMHI----GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMP 236 (428)
T ss_pred cceEEEEcCCCCC--ceEc-ccCCCCcccceEccC----CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccce
Confidence 3467777777654 3333 223445677899999 654 3355556554 556655432 13344567
Q ss_pred EEcCCCCeEEEEec-CC----eEEEEEccccce-eeeeeeecccceeEEEeeCCCCCcEEEE-EcCCCeEEEEE--ccC-
Q 020107 112 EWNPSATSITVGLS-DG----SVSIVSVVESQL-EVLQQWKAHEFELWATSFDVHQPHMVYT-GSDDCKFSGWD--IRE- 181 (331)
Q Consensus 112 ~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d--~~~- 181 (331)
+|+|||+.|+..+. +| .+..|++..+.. ................+|+| +++.|+. ...+|...+|. +..
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc
Confidence 89999998876653 23 344467664211 11222222223446789999 6665554 44566555554 432
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEE
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 258 (331)
+.....+.. +...+....|+| +++.|+..+.+ ..|.+||+.+++ . .. +......+....|+|++..++++
T Consensus 316 g~~~~~lt~---~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~-Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 316 GQSPRLLTK---KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGR-D-YQ-LTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ccceEEecc---CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCC-e-EE-ccCCCCCccceEECCCCCEEEEE
Confidence 222333333 345677889999 88888776543 468999998753 2 22 12233456789999997444444
Q ss_pred EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+...+...+|.+.-..++ ...+....+.+...+|+|..
T Consensus 389 ~~~~g~~~L~~vdl~~g~-~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKK-TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCC-EEEeecCCCcccCceecCCC
Confidence 433333334433332223 23333334556678888754
No 257
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=3.1e-12 Score=109.40 Aligned_cols=208 Identities=20% Similarity=0.241 Sum_probs=152.8
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-cccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccC
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 181 (331)
...+..+..+|.|+-++.++.-|. .+.|+...-. +.+-+. ...-.|-.+.|+|+. +..+++. ....-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~-ppr~l~h~tpw~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFT-PPRWLHHITPWQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCC-CceeeeccCcchhcceecccCCCCceeEEec-Ccchhhhhhhhc
Confidence 345667888899998998888764 4567765321 122221 112236677888753 2344444 455566899875
Q ss_pred CCce-eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 182 SPFK-LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 182 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
.... ..+.. -+|...|+.+.|+|+.+..+++++-|-.+..||+++...|+... ..-...-..++|+... ..+++++
T Consensus 101 ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~-p~vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD-PNVLASS 177 (1081)
T ss_pred CCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-cchhhhc
Confidence 4432 22333 45999999999999999999999999999999999988888773 3444567789999876 4456666
Q ss_pred ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 261 MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
..+.+.+|+.+.. ..++..+++|...|++++|..... ..+.+++ .|++|++||.++..
T Consensus 178 hg~~i~vwd~r~g-s~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~-~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKG-STPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSS-NDGTVKFWDYSKST 235 (1081)
T ss_pred cCCceEEEeccCC-CcceEEecccceeeehHHHhhhhh--------hhhcccC-CCCceeeecccccc
Confidence 6777889999887 778889999999999999988654 6788999 99999999987653
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.2e-10 Score=97.39 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=146.8
Q ss_pred CCCCeEEEEecCCeEEEEEccccceeeeeeee-cccceeEEEeeC------C-------------CCCcEEEEEcCCCeE
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFD------V-------------HQPHMVYTGSDDCKF 174 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~------~-------------~~~~~l~~~~~dg~i 174 (331)
|...++|....||.+++|+...++......-. .-.+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44568999999999999999887642211111 112333444442 2 134578889999999
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG 254 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 254 (331)
.+|+...++....+.. ..|.+.|.++.++. +-..|.+++.|+.+..|+.... + +..........+.+++.+||+ .
T Consensus 83 ~~ys~~~g~it~~~st-~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~-~-~~~~~~~~~~~~~sl~is~D~-~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLST-DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEK-V-IIRIWKEQKPLVSSLCISPDG-K 157 (541)
T ss_pred EEEEecCCeEEEEEec-CCCCCcceeeeccc-ccCceEecCCceeEEEEecccc-e-eeeeeccCCCccceEEEcCCC-C
Confidence 9999999987666665 55999999999988 8889999999999999999873 3 333356777789999999996 5
Q ss_pred eEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 255 LVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.+++++ ..+++|++.. .+.+.+|.||.++|..+.|--+-. +.....+|.+.. .+.-+.+|-++.
T Consensus 158 ~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~---g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLID---GIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEecc---ccccceeeeccc-cccceeEEEEEc
Confidence 555543 5688999988 599999999999999999987700 001114555666 778888998765
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.4e-11 Score=107.60 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=135.2
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG 100 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~ 100 (331)
..++.++ .++.+.+|+..... .+..+...... ...-+-++++ .-++++|+.-+.+ +|....
T Consensus 100 k~i~l~~----------~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~----~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 100 KKIALVT----------SRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAE----ELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred ceEEEEE----------cCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCc----EEEEEeccccccEEEEeccc
Confidence 4566666 58899999988764 22222111111 1223334555 6689999988888 898764
Q ss_pred Ccc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 101 EKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 101 ~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
.+. |.+.|.++.|+.+|.++++.+.|.++++|++++.+... ...-+|...+..++|.| + .+++++.|.+.
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctc 240 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTC 240 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEecc-c--eeEEeccceEE
Confidence 332 68899999999999999999999999999999876433 34557999999999998 3 89999999999
Q ss_pred EEEEccCCCceeeeecccCC-CcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 175 SGWDIRESPFKLAFQNSKIH-KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
++|+....+ ...+.. | ...|..++..+ +...++|++.|+.+++||+..
T Consensus 241 rvW~~~~~~-l~~y~~---h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVNGTQ-LEVYDE---HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecccce-ehhhhh---hhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 999766433 334443 5 45689999988 888999999999999999865
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=9.5e-10 Score=95.09 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=120.0
Q ss_pred CccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCC--eEEEEE
Q 020107 105 SSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDC--KFSGWD 178 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d 178 (331)
...+...+|+|+++.|+.+..+ ..|++||+.+++...+ ..+...+.+++|+| +++.| ++.+.++ .|++||
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECC-CCCEEEEEECCCCCccEEEEE
Confidence 4457888999999998887653 4799999988754333 23444566789999 55544 5555544 588899
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (331)
+.++... .+.. +........|+| +++.|+..+. ++ .|.++|+... . ... +..+...+....|+|++ ..
T Consensus 265 ~~~~~~~-~l~~---~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~-~-~~~-l~~~~~~~~~~~~spdg-~~ 335 (417)
T TIGR02800 265 LDGKQLT-RLTN---GPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGG-E-VRR-LTFRGGYNASPSWSPDG-DL 335 (417)
T ss_pred CCCCCEE-ECCC---CCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCC-C-EEE-eecCCCCccCeEECCCC-CE
Confidence 8876533 3332 444456778999 8887776554 33 5777777653 2 222 23455667788999997 44
Q ss_pred EEEEEecC---cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCC
Q 020107 256 VLAACMHN---GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPES 326 (331)
Q Consensus 256 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~ 326 (331)
++.+..++ .+.++++.. +. ...+... .......|+|++ ++|+..+ .++ .+++.+.+.
T Consensus 336 i~~~~~~~~~~~i~~~d~~~--~~-~~~l~~~-~~~~~p~~spdg---------~~l~~~~-~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDG--GG-ERVLTDT-GLDESPSFAPNG---------RMILYAT-TRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEEccCCceEEEEEeCCC--CC-eEEccCC-CCCCCceECCCC---------CEEEEEE-eCCCcEEEEEEECCC
Confidence 55544443 344444443 22 2223322 234456899998 5666665 333 455555443
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=7.7e-12 Score=116.39 Aligned_cols=190 Identities=12% Similarity=0.225 Sum_probs=143.4
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
++..|.....+|...+.++|+ .||.|++|....++ ++......-+..|+.+.|+.. |..+..+..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs----------~dgsv~~~~w~~~~-~v~~~rt~g~s~vtr~~f~~q----Gnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGS----------QDGSVRMFEWGHGQ-QVVCFRTAGNSRVTRSRFNHQ----GNKFGIVDG 2271 (2439)
T ss_pred ccCceeeecCCCCCceEEecC----------CCceEEEEeccCCC-eEEEeeccCcchhhhhhhccc----CCceeeecc
Confidence 444444444444446778887 79999999988776 455554445577999999999 889999999
Q ss_pred CccE-EEecCC-----CcccCccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 91 DGGL-LRDITG-----EKISSSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 91 dg~i-iw~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
||.+ +|.... .++|+.....+.|-. ..+++++. ++.+.+||..-........ ..|.+.++++++.| .
T Consensus 2272 dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2272 DGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred CCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-c
Confidence 9999 998874 456777778888865 55666543 7899999976533222222 78999999999999 7
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
.++|++|+++|.|++||++..+....++. ++ ...+|++|+..|.|+||++... ..+..
T Consensus 2348 ~qllisggr~G~v~l~D~rqrql~h~~~~------------~~--~~~~f~~~ss~g~ikIw~~s~~-~ll~~ 2405 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA------------LD--TREYFVTGSSEGNIKIWRLSEF-GLLHT 2405 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHHHHHHhhh------------hh--hhheeeccCcccceEEEEcccc-chhhc
Confidence 79999999999999999998765544442 23 4678999999999999999875 44443
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.2e-09 Score=94.57 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=117.0
Q ss_pred CccEEEEEEcCCCCeEEEEec-C--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCe--EEEEE
Q 020107 105 SSMCLCLEWNPSATSITVGLS-D--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCK--FSGWD 178 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~--i~i~d 178 (331)
...+.+..|+|||+.|+..+. + ..|.++|+.+++...+..+.+ .....+|+| +++.| ++.+.++. |.++|
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSP-DGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECC-CCCEEEEEEeCCCCeEEEEEE
Confidence 456778999999999887654 3 368889998876544433332 334789999 55544 45566664 77788
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (331)
+.+++. ..+.. +........|+| +++.|+..+ .++ .|.++|+.++ + ... +..........+|+|+++.+
T Consensus 293 l~tg~~-~~lt~---~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 293 IATKAL-TRITR---HRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG-K-VSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred CCCCCe-EECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC-C-EEE-EecCCCCCcCeeECCCCCEE
Confidence 887653 33333 455667889999 887776655 344 4555566553 2 222 11222334457999998444
Q ss_pred EEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe--EEEEcCCCc
Q 020107 256 VLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL--LRIWMPESD 327 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~--i~iW~~~~~ 327 (331)
+++....+...+|.+.-..++. ..+... .......|+|++ +.|+..+..++. |++++.+..
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~-~~lt~~-~~d~~ps~spdG---------~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAM-QVLTST-RLDESPSVAPNG---------TMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEecCCceEEEEEECCCCCe-EEccCC-CCCCCceECCCC---------CEEEEEEecCCceEEEEEECCCC
Confidence 4443334445565554332332 223322 122345799998 455544414443 677776543
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.2e-11 Score=115.18 Aligned_cols=192 Identities=15% Similarity=0.250 Sum_probs=149.0
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 134 (331)
+.+-..|.+|.=+|. ..+.++|+.||.+ +|....++. .+..|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2205 k~~v~~v~r~~sHp~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 345567899998998 7799999999999 777665443 2477888999999999999999999999998
Q ss_pred cccceeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 135 VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
. . .+....+.|.....++.|-. ..+++++ .++.+.+||..-......+. ..|.+.++++++.| ...+|
T Consensus 2281 ~-p--k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~~qll 2351 (2439)
T KOG1064|consen 2281 S-P--KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-KHQLL 2351 (2439)
T ss_pred C-C--cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-cceEE
Confidence 7 2 45778889999999999874 5666655 57899999987544322222 34999999999999 99999
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
++|+.+|.|++||++.. +..+. +.. +. .+..++.+...+.++||++... ..+.++.
T Consensus 2352 isggr~G~v~l~D~rqr-ql~h~-~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~--~ll~~~p 2407 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQR-QLRHT-FQA---------LD--TREYFVTGSSEGNIKIWRLSEF--GLLHTFP 2407 (2439)
T ss_pred EecCCcCcEEEeehHHH-HHHHH-hhh---------hh--hhheeeccCcccceEEEEcccc--chhhcCc
Confidence 99999999999999973 33333 111 34 2277888888999999999874 5555544
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-10 Score=90.00 Aligned_cols=240 Identities=15% Similarity=0.216 Sum_probs=162.6
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------cc------------CccEEEEEEcCCCC--e
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------IS------------SSMCLCLEWNPSAT--S 119 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~------------~~~v~~~~~~~~~~--~ 119 (331)
...|+++.|... |.+|++|...|.+ ++.-.... .| ...|..+.|..++. .
T Consensus 26 ad~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 356999999999 8999999999998 54433221 11 34577888876553 4
Q ss_pred EEEEecCCeEEEEEcccccee----------------------------------------eeeee-ecccceeEEEeeC
Q 020107 120 ITVGLSDGSVSIVSVVESQLE----------------------------------------VLQQW-KAHEFELWATSFD 158 (331)
Q Consensus 120 l~~~~~dg~i~i~d~~~~~~~----------------------------------------~~~~~-~~~~~~v~~~~~~ 158 (331)
++..+.|.+|++|.+....++ +.+.+ ..|...+.++.++
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 778888999999998653100 00011 3466778899998
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC-----cceEEEEEecCCCCEEEEEecCCeEEEEEecCCC----
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK-----MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS---- 229 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---- 229 (331)
. +...++++ .|-.|.+|++.-......+...++|. .-|++..|+|...+.+.-.+..|.|++-|+|...
T Consensus 182 s-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 182 S-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred C-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 6 65555554 58889999998655433333334454 3589999999777788888889999999999532
Q ss_pred -CCcee---------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC------------cc
Q 020107 230 -KPVNE---------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG------------SL 287 (331)
Q Consensus 230 -~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 287 (331)
..+.+ .+......|..+.|+++ +.++.+-....+++|++... ..++.+..-|. ..
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdyltvkiwDvnm~-k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDYLTVKIWDVNMA-KNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEeccceEEEEecccc-cCCceeechHHHHHHHHHhhhhccc
Confidence 11111 11122346888999999 66677777888999999876 56666665442 23
Q ss_pred ee---eeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 288 AY---GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 288 v~---~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
|. .+.|+-+. ..+++|+ .....-++-.
T Consensus 337 ifdkFeisfSgd~---------~~v~sgs-y~NNfgiyp~ 366 (460)
T COG5170 337 IFDKFEISFSGDD---------KHVLSGS-YSNNFGIYPT 366 (460)
T ss_pred eeeeEEEEecCCc---------ccccccc-cccceeeecc
Confidence 32 46777776 5788887 7776666654
No 265
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.29 E-value=1.8e-08 Score=77.63 Aligned_cols=198 Identities=13% Similarity=0.157 Sum_probs=117.6
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEEccccceeee---eeee-cccceeEEEeeCCCC-----CcEEEEEcCCCeEEEEE
Q 020107 108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL---QQWK-AHEFELWATSFDVHQ-----PHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d 178 (331)
=..++|+||+..||.+...|+|++||+.....-.+ ..+. .-...|..+.|-+.. ...|++-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 35789999999999999999999999986432111 0011 112456666665422 23566777788888777
Q ss_pred ccCC-----CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107 179 IRES-----PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP 253 (331)
Q Consensus 179 ~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (331)
+..+ +....+.....+...|.++.++| ..++|++||.... +. . . . .+-...+++-+.-.+.+
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~--~-~-s--~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN------QD--G-M-S--KASSCGLTAWRILSDSP 192 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC------CC--c-c-c--cccccCceEEEEcCCCC
Confidence 6432 22334444333577899999999 7778777764322 00 0 0 0 12222333333333322
Q ss_pred CeEEEEEecCcEE-------EEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 254 GLVLAACMHNGFA-------VVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 254 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
....+...++.+. ++++-. .+...........|..|..||++ .+||+.. .+|.|.+|++.+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg---------~~La~ih-~sG~lsLW~iPs 260 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDG---------SLLACIH-FSGSLSLWEIPS 260 (282)
T ss_pred cEEEccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCCC---------CEEEEEE-cCCeEEEEecCc
Confidence 3333333333321 222221 11111122346789999999999 7999999 899999999987
Q ss_pred cccC
Q 020107 327 DCLT 330 (331)
Q Consensus 327 ~~~~ 330 (331)
-.+.
T Consensus 261 L~~~ 264 (282)
T PF15492_consen 261 LRLQ 264 (282)
T ss_pred chhh
Confidence 6543
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.3e-09 Score=87.19 Aligned_cols=273 Identities=14% Similarity=0.150 Sum_probs=178.5
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.-.-|+|+|.+ .||++-- ..-|.+|-=..- ..+.+.-...|.-+.|||. .++|++-+.
T Consensus 212 Tetyv~wSP~G---TYL~t~H-----------k~GI~lWGG~~f----~r~~RF~Hp~Vq~idfSP~----EkYLVT~s~ 269 (698)
T KOG2314|consen 212 TETYVRWSPKG---TYLVTFH-----------KQGIALWGGESF----DRIQRFYHPGVQFIDFSPN----EKYLVTYSP 269 (698)
T ss_pred eeeeEEecCCc---eEEEEEe-----------ccceeeecCccH----HHHHhccCCCceeeecCCc----cceEEEecC
Confidence 34568888888 8999886 566899964443 3333334456899999999 999999764
Q ss_pred CccE------------EEecCCCcccCc--------cE-EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc
Q 020107 91 DGGL------------LRDITGEKISSS--------MC-LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE 149 (331)
Q Consensus 91 dg~i------------iw~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 149 (331)
.-.. |||+.++....+ .+ .-..||.|++++|.-.. .+|.||+..+-.+...+.+ .-
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki 346 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--KI 346 (698)
T ss_pred CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--CC
Confidence 3222 999999876321 11 23579999999987766 6788998765322112222 24
Q ss_pred ceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE----------
Q 020107 150 FELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG---------- 214 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---------- 214 (331)
..|....|+| .+++|+-=. .-..+.+-.+.+++.+..... +.-.=..+.|-. +|.+|+.-
T Consensus 347 ~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk-~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 347 SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQK-SGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred ccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEecc-CCcEEEEEEEeecccccc
Confidence 5688899999 666665422 123455666665554444444 444445566666 67776653
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec--CcEEEEEEcCc--ccceeEEeecCCcceee
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH--NGFAVVKVGGE--KAEVLETYAKHGSLAYG 290 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~h~~~v~~ 290 (331)
+.=..+.|+.++.-.-|+.. ......|...+|-|.|+...+.++.. ..+.+|.+... ..+++..+.. ...+.
T Consensus 422 g~f~n~eIfrireKdIpve~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~ 497 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEV--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANT 497 (698)
T ss_pred ceEeeEEEEEeeccCCCcee--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccce
Confidence 22234777888875556655 67788999999999996666666544 34566666532 2445555543 45678
Q ss_pred eeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCC
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPES 326 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~ 326 (331)
+.|+|.| ++++.++- ..|.+.++|++-
T Consensus 498 vfwsPkG---------~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 498 VFWSPKG---------RFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEEcCCC---------cEEEEEEecccccceEEEecch
Confidence 9999999 67766531 578899999863
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=8.5e-11 Score=90.95 Aligned_cols=210 Identities=13% Similarity=0.203 Sum_probs=145.1
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccc---eeeeeeeeccc------------ceeEEEeeCC-CCCcEEEEE
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ---LEVLQQWKAHE------------FELWATSFDV-HQPHMVYTG 168 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~------------~~v~~~~~~~-~~~~~l~~~ 168 (331)
...|+++.|...|.++++|...|.|.+|.-+... .+....+++|. ..|..+.|-. .+.+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999876532 22234455553 4567787764 234567777
Q ss_pred cCCCeEEEEEccCCCce----------------------eee-----------------e-cccCCCcceEEEEEecCCC
Q 020107 169 SDDCKFSGWDIRESPFK----------------------LAF-----------------Q-NSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~----------------------~~~-----------------~-~~~~~~~~v~~~~~~~~~~ 208 (331)
+.|.+|++|.+...... +.+ + ....|...|.++.++. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 88999999998754110 000 0 0134777789999987 66
Q ss_pred CEEEEEecCCeEEEEEecCCCCCceeee-eec-----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----cce-
Q 020107 209 NTLLTGSYDEYLRVWDVRSISKPVNETS-VCL-----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----AEV- 277 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 277 (331)
..++++ .|-.|.+|++........... .+| ..-|++..|+|.....++-+++.+.|++.+++... ...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 666655 578899999987544433311 223 23589999999877788888889999999888421 111
Q ss_pred ---------eEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 278 ---------LETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 278 ---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..-+.+-...|.++.|++++ +++++-. =-+|+|||+...
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ng---------ryIlsRd--yltvkiwDvnm~ 311 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNG---------RYILSRD--YLTVKIWDVNMA 311 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCC---------cEEEEec--cceEEEEecccc
Confidence 11122344578899999998 7888865 689999998654
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=2.1e-09 Score=81.61 Aligned_cols=218 Identities=11% Similarity=-0.025 Sum_probs=138.5
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC---
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG--- 100 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~--- 100 (331)
.+||.|+ ..|...+|...+.+.-+... ..|...|+-+.=.-+. ..-+..++.|.++ +.++..
T Consensus 85 ~~la~gG----------~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 85 VTLADGG----------ASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cEEEecc----------ccceeeeecccCcccceeee-cccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcc
Confidence 4788887 79999999998776333333 4455443322221121 2245566666666 333332
Q ss_pred -CcccCc--cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee-eeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 101 -EKISSS--MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ-QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 101 -~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
...|.. .+.+++++++++++++.+....|..|.+.......+. ........-.+..|+. ....+|++..||++.|
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAI 229 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEE
Confidence 223332 3789999999999999999999999999875433333 2233344556888996 7789999999999999
Q ss_pred EEccCCCceeee--ecccCCCcceEEEEEecCCC--CEEEEEecCCeEEEEEecCCCCCceee-----eeecCC-ceEEE
Q 020107 177 WDIRESPFKLAF--QNSKIHKMGVCCIASIPSDS--NTLLTGSYDEYLRVWDVRSISKPVNET-----SVCLGG-GVWRI 246 (331)
Q Consensus 177 ~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~-~v~~~ 246 (331)
||+|........ ...+.|.+.++.+.|++ .+ .+|...-.=+.+.+.|+|+........ +..|.. .|...
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 999975532222 12355899999999997 43 234444345789999999864322221 112222 36667
Q ss_pred EECCCCCCeEEE
Q 020107 247 KHHPFIPGLVLA 258 (331)
Q Consensus 247 ~~~~~~~~~~~~ 258 (331)
.|+.+++...++
T Consensus 309 ~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 309 NFNNENESNDVK 320 (344)
T ss_pred cccCCCcccccc
Confidence 777765444433
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.1e-09 Score=87.31 Aligned_cols=231 Identities=16% Similarity=0.227 Sum_probs=148.8
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE--EcCCccE----EEecCCCccc---------Ccc
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ--ADADGGL----LRDITGEKIS---------SSM 107 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg~i----iw~~~~~~~~---------~~~ 107 (331)
.+.+++|++..... ...+.|...|+.+.+||.++ ...+|+ -..+|.. ||.......| ...
T Consensus 145 ~nev~f~~~~~f~~---~~~kl~~~~i~~f~lSpgp~--~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad 219 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKT---IQHKLSVSGITMLSLSPGPE--PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD 219 (566)
T ss_pred cceEEEEecCCccc---eeeeeeccceeeEEecCCCC--CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc
Confidence 67899999988542 22345788999999999843 234544 2344544 8877744333 112
Q ss_pred EEEEEEcCCCCeE-EEEec--C---------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEE--EcCCCe
Q 020107 108 CLCLEWNPSATSI-TVGLS--D---------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT--GSDDCK 173 (331)
Q Consensus 108 v~~~~~~~~~~~l-~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~ 173 (331)
=..+.|++-|.-| +.++. | .++++++++.. .....+. ..++|.++.|+| ++..+++ |-.-..
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~--s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE--SVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAK 295 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc--eEEEecC-CCCCceEEEECC-CCCEEEEEEecccce
Confidence 2357788877643 22221 3 35777777632 2233343 478999999999 6554443 456778
Q ss_pred EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECC
Q 020107 174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP 250 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 250 (331)
+.|+|++. ...+.. ..++=+++-|+| .+++++.+|.+ |.|-+||..+ .+.+.. ..-..-+-+.|+|
T Consensus 296 vtifnlr~---~~v~df---~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~---~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 296 VTIFNLRG---KPVFDF---PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN-RKLIAK---FKAANTTVFEWSP 364 (566)
T ss_pred EEEEcCCC---CEeEeC---CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc-hhhccc---cccCCceEEEEcC
Confidence 99999984 334444 467788999999 99999998865 7899999998 344443 2223455689999
Q ss_pred CCCCeEEEEEe-----cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 251 FIPGLVLAACM-----HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 251 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+|+.++.+++. |+++++|+... ..+....- ....+.+.|-|-.
T Consensus 365 dGe~flTATTaPRlrvdNg~KiwhytG---~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYTG---SLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEecC---ceeehhhh-hHhHhheeeeecC
Confidence 99544444444 67888888774 33332211 1146777777654
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.26 E-value=1.4e-10 Score=87.44 Aligned_cols=150 Identities=15% Similarity=0.285 Sum_probs=98.4
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeeeec
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.++.++++..||.+.+++.+. .......+......-.+.+... .++.+.++. .-+..+.|+++..+....-..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence 456799999999999999875 2111111111111111222221 334444433 123456677664432222111
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
....|.+++-+|...+++++|+.||.+.+||.|+...|... +..|+.+++.+-|+|..+..+++++.++. +|.+
T Consensus 178 ---~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGs--lw~w 251 (319)
T KOG4714|consen 178 ---ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGS--LWHW 251 (319)
T ss_pred ---ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCc--EEEE
Confidence 24459999999977888999999999999999997555554 68999999999999998889999988888 6655
Q ss_pred cCc
Q 020107 271 GGE 273 (331)
Q Consensus 271 ~~~ 273 (331)
...
T Consensus 252 das 254 (319)
T KOG4714|consen 252 DAS 254 (319)
T ss_pred cCC
Confidence 543
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=1.1e-07 Score=78.20 Aligned_cols=255 Identities=11% Similarity=0.012 Sum_probs=147.7
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccCc------
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISSS------ 106 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~~------ 106 (331)
+.|.+.|.++.+ .+..+..+.... .+ ++|+ ++.|+++.. +..+ +||..+.+....
T Consensus 27 ~~v~ViD~~~~~-v~g~i~~G~~P~--~~-~spD----g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGR-VLGMTDGGFLPN--PV-VASD----GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCE-EEEEEEccCCCc--ee-ECCC----CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 899999999876 444454443332 24 9999 777777766 4555 999988765311
Q ss_pred -------cEEEEEEcCCCCeEEEEe-c-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 107 -------MCLCLEWNPSATSITVGL-S-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 107 -------~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
....++++|+|++|++.. . +..|.+.|+.+++. +.++.... ...-...++ . ..+ +-+.||.....
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~vp~-~~~vy~t~e-~-~~~-~~~~Dg~~~~v 172 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDVPD-CYHIFPTAN-D-TFF-MHCRDGSLAKV 172 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeCCC-CcEEEEecC-C-ccE-EEeecCceEEE
Confidence 122788999999999876 3 79999999998865 55444311 222222222 2 222 22335555444
Q ss_pred EccCCCceeee--ecccC-----CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC----CCceeeee------ecC
Q 020107 178 DIRESPFKLAF--QNSKI-----HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS----KPVNETSV------CLG 240 (331)
Q Consensus 178 d~~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~------~~~ 240 (331)
.+........- ..+.. ...+ .|.+.++.++.+..+ |+|.+.|+.... .++..... -..
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 33321111100 00000 0112 334436777766666 999999965421 12211000 123
Q ss_pred CceEEEEECCCCCCeEEEE-E--------ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEE
Q 020107 241 GGVWRIKHHPFIPGLVLAA-C--------MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVA 310 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~ 310 (331)
+.+.-++++|+++.++++. + ..+. +|-+...+.+.+..+.- ...+..++++|++ + +|+
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~--V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg---------kp~ly 315 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRF--LFVVDAKTGKRLRKIEL-GHEIDSINVSQDA---------KPLLY 315 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCE--EEEEECCCCeEEEEEeC-CCceeeEEECCCC---------CeEEE
Confidence 3445599999985555433 1 1134 44444444677777663 3478899999998 4 555
Q ss_pred EeecCCCeEEEEcCCCccc
Q 020107 311 TCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 311 s~~~~d~~i~iW~~~~~~~ 329 (331)
+....++.|.+.|+.++..
T Consensus 316 vtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EeCCCCCcEEEEECcCCeE
Confidence 4432688999999988743
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.5e-09 Score=90.93 Aligned_cols=202 Identities=8% Similarity=-0.032 Sum_probs=115.3
Q ss_pred ccEEEEEEcCCCCeE---EEEecC--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCC----eEE
Q 020107 106 SMCLCLEWNPSATSI---TVGLSD--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDC----KFS 175 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l---~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg----~i~ 175 (331)
....+-+|+|||+.+ ++...+ ..|.+.++.+++...+..+.+ .....+|+| +++.|+..+ .+| .+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSP-DG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSP-RKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECC-CCCEEEEEECCCCCcceeEE
Confidence 445667899999753 244444 357888888776544544443 345689999 665555443 323 445
Q ss_pred EEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEec--CCCCCceeeeeecCCceEEEEECC
Q 020107 176 GWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVR--SISKPVNETSVCLGGGVWRIKHHP 250 (331)
Q Consensus 176 i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~ 250 (331)
+|++..+. ....+.. ..........|+| +++.|+..+ .+|...+|.+. ........ +......+....|+|
T Consensus 261 ~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-lt~~~~~~~~p~wSP 336 (428)
T PRK01029 261 SFSLETGAIGKPRRLLN--EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-LTKKYRNSSCPAWSP 336 (428)
T ss_pred EeecccCCCCcceEeec--CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE-eccCCCCccceeECC
Confidence 57776532 1222221 1223446789999 888777655 56765666543 21122222 233445677899999
Q ss_pred CCCCeEEEEEec-C--cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC--CCeEEEEcCC
Q 020107 251 FIPGLVLAACMH-N--GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY--DRLLRIWMPE 325 (331)
Q Consensus 251 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~--d~~i~iW~~~ 325 (331)
++ ..++..+.. + .+.+|++.. ++ ...+......+....|+|++ +.|+..+.. ...|++|+++
T Consensus 337 DG-~~Laf~~~~~g~~~I~v~dl~~--g~-~~~Lt~~~~~~~~p~wSpDG---------~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 337 DG-KKIAFCSVIKGVRQICVYDLAT--GR-DYQLTTSPENKESPSWAIDS---------LHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CC-CEEEEEEcCCCCcEEEEEECCC--CC-eEEccCCCCCccceEECCCC---------CEEEEEECCCCCceEEEEECC
Confidence 98 444444333 2 344555443 23 23333333456789999998 455533212 3578889987
Q ss_pred Ccc
Q 020107 326 SDC 328 (331)
Q Consensus 326 ~~~ 328 (331)
++.
T Consensus 404 ~g~ 406 (428)
T PRK01029 404 TKK 406 (428)
T ss_pred CCC
Confidence 764
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-08 Score=84.81 Aligned_cols=293 Identities=12% Similarity=0.118 Sum_probs=171.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCC-CCCCCcEEEEeccCcccceEEeEe--eecCcEeEEEEcCCCCCCCCe
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDK-PSRNGSISLFNVNAEEKNLELLYR--MDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~-~~~~g~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~ 84 (331)
....+.-|.|+|.. +||++-++.+..... .+....+.|||+.++. ..+.+.. .....-.-..||.+ +++
T Consensus 248 ~Hp~Vq~idfSP~E---kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~D----dKy 319 (698)
T KOG2314|consen 248 YHPGVQFIDFSPNE---KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSHD----DKY 319 (698)
T ss_pred cCCCceeeecCCcc---ceEEEecCCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEeccC----Cce
Confidence 33345566666666 899998876655322 2345689999999986 2222211 11112334789999 899
Q ss_pred EEEEcCCccEEEecCC------CcccCccEEEEEEcCCCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeE
Q 020107 85 LAQADADGGLLRDITG------EKISSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 85 l~~~~~dg~iiw~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
+|.-..++..|++... .......|....|+|.++.||-=.. -..+.+..+.+++. ++.-.-+.-.=.
T Consensus 320 ~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~--iRt~nlfnVsDc 397 (698)
T KOG2314|consen 320 FARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE--IRTKNLFNVSDC 397 (698)
T ss_pred eEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce--eeeccceeeecc
Confidence 9988887776555443 2334567888999999877765332 12344444444322 332222222222
Q ss_pred EEeeCCCCCcEEEEE----------cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec---CCeE
Q 020107 154 ATSFDVHQPHMVYTG----------SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYL 220 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i 220 (331)
.+.|.. ++.+|+.- +.-..+.|+.++.......... -...|...+|-| .|+.+++-+. ..++
T Consensus 398 kLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---lke~vi~FaWEP-~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 398 KLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---LKESVIAFAWEP-HGDKFAVISGNTVKNTV 472 (698)
T ss_pred EEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---cchheeeeeecc-CCCeEEEEEccccccce
Confidence 345554 55555532 2223466777776553222222 477899999999 8877776553 3578
Q ss_pred EEEEecC-CCCCceeeeeecCCceEEEEECCCCCCeEEEEE---ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCC
Q 020107 221 RVWDVRS-ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC---MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 221 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
.+|-+.+ ..++... ..-.....+.+.|+|.| +.+++++ ..+.+..++.... ....+-....-..+.+.|.|.
T Consensus 473 sfY~~e~~~~~~~lV-k~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a--~~k~~~~~eh~~at~veWDPt 548 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLV-KELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYA--DLKDTASPEHFAATEVEWDPT 548 (698)
T ss_pred eEEEeecCCCchhhh-hhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchh--hhhhccCccccccccceECCC
Confidence 8998884 3222221 11223557889999997 5544443 2455666666542 222221122235678999999
Q ss_pred CCcccccccCcEEEEeec-----CCCeEEEEcCCCcc
Q 020107 297 RSSLEGKRKNSLVATCSF-----YDRLLRIWMPESDC 328 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~~ 328 (331)
| ++++|+++ .|.--+||++...+
T Consensus 549 G---------RYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 549 G---------RYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred C---------CEEEEeeehhhhccccceEEEEeecHH
Confidence 9 89999973 34556777766543
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=3.8e-08 Score=93.21 Aligned_cols=240 Identities=11% Similarity=0.117 Sum_probs=148.8
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-------------------CccEEEEEEcCCCCeEEEEec-CCeE
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-------------------SSMCLCLEWNPSATSITVGLS-DGSV 129 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~-dg~i 129 (331)
.+++++.+ +.++++-..++.+ +++....... -.....++++++++.|+++.. ++.|
T Consensus 572 gvavd~~~---g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDLLN---NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEECCC---CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 56777652 4455555666666 6665433110 112467899998887766654 6789
Q ss_pred EEEEccccceeeeee-------eecc-------cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc----
Q 020107 130 SIVSVVESQLEVLQQ-------WKAH-------EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---- 191 (331)
Q Consensus 130 ~i~d~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 191 (331)
+++|+.++....+.. +.+. -.....++++|.++.++++.+.++.|++||..++... .+...
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999987754322211 0000 1123578999866777888888999999999876432 22110
Q ss_pred --c------CCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCCCCcee--------ee--ee---------cCCce
Q 020107 192 --K------IHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSISKPVNE--------TS--VC---------LGGGV 243 (331)
Q Consensus 192 --~------~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--------~~--~~---------~~~~v 243 (331)
. ..-.....|+++| ++. ++++-+.++.|++||+.++...+.. .. .+ .-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 0112456799999 776 5556667799999999864321100 00 00 01124
Q ss_pred EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--------------CCcceeeeeecCCCCcccccccCcEE
Q 020107 244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--------------HGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
..+++++++ .++++-..++.+++|+.... . +.++.+ .-....++++++++ +++
T Consensus 807 ~Gvavd~dG-~LYVADs~N~rIrviD~~tg--~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG---------~ly 873 (1057)
T PLN02919 807 LGVLCAKDG-QIYVADSYNHKIKKLDPATK--R-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG---------RLF 873 (1057)
T ss_pred ceeeEeCCC-cEEEEECCCCEEEEEECCCC--e-EEEEeccCCcCCCCCcccccccCCceEEEEeCCC---------CEE
Confidence 678999987 56777777778888886542 2 222221 12246788999988 678
Q ss_pred EEeecCCCeEEEEcCCCccc
Q 020107 310 ATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~~~~~~ 329 (331)
++-+ .++.|++||++++..
T Consensus 874 VaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEC-CCCEEEEEECCCCcc
Confidence 8877 899999999988643
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=2.1e-08 Score=82.89 Aligned_cols=272 Identities=12% Similarity=0.102 Sum_probs=177.9
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.++..+.++|.+ .+|++.. -..|.+|.-.... .+. ..-...|..+.|+|. +++|.+-+
T Consensus 33 ~p~~~~~~SP~G---~~l~~~~-----------~~~V~~~~g~~~~-~l~---~~~~~~V~~~~fSP~----~kYL~tw~ 90 (561)
T COG5354 33 WPVAYVSESPLG---TYLFSEH-----------AAGVECWGGPSKA-KLV---RFRHPDVKYLDFSPN----EKYLVTWS 90 (561)
T ss_pred cchhheeecCcc---hheehhh-----------ccceEEccccchh-hee---eeecCCceecccCcc----cceeeeec
Confidence 466677777776 8898886 6679999877654 232 333467999999999 99999988
Q ss_pred CCccE----------------EEecCCCccc------Ccc--EE-EEEEcCCCCeEEEEecCCeEEEEEccccce--eee
Q 020107 90 ADGGL----------------LRDITGEKIS------SSM--CL-CLEWNPSATSITVGLSDGSVSIVSVVESQL--EVL 142 (331)
Q Consensus 90 ~dg~i----------------iw~~~~~~~~------~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~ 142 (331)
..+.+ +||+.++.+. ..+ .. -+.|+-+.+++|-- ....+.|+++ ++.. .+.
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCch
Confidence 77763 8988887652 122 33 56788787776554 3467899997 4332 122
Q ss_pred eeeecccceeEEEeeCCC-CCcEEEE-----EcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 143 QQWKAHEFELWATSFDVH-QPHMVYT-----GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
..++ ...+....|+|. +...|+. .+..+.+++|.+...+.+..... ....=..+.|++ .+++|+.--.
T Consensus 169 ~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~-~g~~ll~l~~ 242 (561)
T COG5354 169 KNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQV-LGKYLLVLVM 242 (561)
T ss_pred hhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEec-CCceEEEEEE
Confidence 3332 356888899984 2233333 45678999999987665554444 233345688888 7776654321
Q ss_pred -----------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecC
Q 020107 217 -----------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 217 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
...+.|++++....++. ....++|...+|.|.++++.+++|. .-.+.++++.. .+...+ .
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i~V~---~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~~~--P 314 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSIPVE---KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRFYF--P 314 (561)
T ss_pred EeeecccceeccceEEEEeeccccccee---ccccccceeeeecccCCceeEEecccccceeeccccc---ceEEec--C
Confidence 24588888885322222 3668899999999998777777653 44444555543 433333 3
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC 328 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~ 328 (331)
...-..+.|+|.. ++++.+|+ ..|.|-+|+.....
T Consensus 315 e~~rNT~~fsp~~---------r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 315 EQKRNTIFFSPHE---------RYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred CcccccccccCcc---------cEEEEecCCccccceEEeccCCce
Confidence 3444567788887 78888774 33778888877653
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.21 E-value=1.2e-07 Score=77.92 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=126.1
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc-cE-EEecCCC
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG-GL-LRDITGE 101 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-~i-iw~~~~~ 101 (331)
|+++|.-+ .|...|.+.-.+. .+.-+|.+.|.-..+..+ .+-++.|..|| .+ +++..+.
T Consensus 332 Gd~ia~VS-----------RGkaFi~~~~~~~----~iqv~~~~~VrY~r~~~~----~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 332 GDYIALVS-----------RGKAFIMRPWDGY----SIQVGKKGGVRYRRIQVD----PEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred CcEEEEEe-----------cCcEEEECCCCCe----eEEcCCCCceEEEEEccC----CcceEEeccCCceEEEEecCCc
Confidence 47888887 8888888776653 334578888999999988 67899999999 45 9999887
Q ss_pred cc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC----
Q 020107 102 KI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC---- 172 (331)
Q Consensus 102 ~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---- 172 (331)
+. .-+.|.++..+++|+.++++.....|.++|++++..+.+. +...+-|+.++|+| ++.+++-+--+|
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf~~~~-nsr~iAYafP~gy~tq 469 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEEEEcC-CceeEEEecCcceeee
Confidence 64 3577999999999999999999999999999998764333 34466799999999 778888776554
Q ss_pred eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 173 KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 173 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
.|+++|+..++.. .... ..+.=.+-+|.| ++++|.--+
T Consensus 470 ~Iklydm~~~Kiy-~vTT---~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 470 SIKLYDMDGGKIY-DVTT---PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred eEEEEecCCCeEE-EecC---CcccccCcccCC-CCcEEEEEe
Confidence 6899999987633 3333 233345567888 777766544
No 277
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.6e-08 Score=87.73 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=116.1
Q ss_pred CccEEEEEEcCCCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCC--eEEEEE
Q 020107 105 SSMCLCLEWNPSATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDC--KFSGWD 178 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d 178 (331)
...+....|+|+|+.|+..+.+ ..|.+|++.+++...+.... ..+....|+| +++.|+ +...++ .|.++|
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECC-CCCEEEEEEccCCCceEEEEE
Confidence 4567889999999998776543 46899999887654443333 3345789999 555554 555555 688889
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (331)
+.+++.. .+.. +........|+| +++.|+..+. ++ .|.++|+.+++ ... ............|+|++..+
T Consensus 274 ~~~~~~~-~lt~---~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~--~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 274 LASRQLS-RVTN---HPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGR--AER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred CCCCCeE-Eccc---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEE-eecCCCCccceEECCCCCEE
Confidence 9887643 3333 445566788999 8877665553 33 56666776542 222 11122234467899998443
Q ss_pred EEEEEecCc--EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC--CeEEEEcCCCc
Q 020107 256 VLAACMHNG--FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD--RLLRIWMPESD 327 (331)
Q Consensus 256 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d--~~i~iW~~~~~ 327 (331)
+++...++. +.++++.. ++ ...+.. ........|+|++ ++++..+..+ ..|.+++++.+
T Consensus 346 ~~~~~~~~~~~l~~~dl~t--g~-~~~lt~-~~~~~~p~~spdg---------~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQR--GS-VRILTD-TSLDESPSVAPNG---------TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEccCCceEEEEEECCC--CC-EEEccC-CCCCCCceECCCC---------CEEEEEEecCCceEEEEEECCCC
Confidence 333323333 33344433 22 222221 2223356899998 4665544133 34666676543
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=4.4e-09 Score=90.43 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=163.9
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+++||-.+|....++...+.|.++. .+|.|.+|-+-.++.....+.....+.|.+|+|+.+ |+.++
T Consensus 66 tLeGH~~sV~vvTWNe~~QKLTtSD----------t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d----G~kIc 131 (1189)
T KOG2041|consen 66 TLEGHNASVMVVTWNENNQKLTTSD----------TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD----GTKIC 131 (1189)
T ss_pred hhccCcceEEEEEeccccccccccC----------CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC----CcEEE
Confidence 4677777777666665556777765 899999999988764433443445567999999999 99999
Q ss_pred EEcCCccE---------EEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc---c--eeeeee----eecc
Q 020107 87 QADADGGL---------LRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES---Q--LEVLQQ----WKAH 148 (331)
Q Consensus 87 ~~~~dg~i---------iw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~----~~~~ 148 (331)
..-.||.+ ||.-+- .......+.|++|.+.++.+-.+|.+.+||.... + ..+... +...
T Consensus 132 IvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 132 IVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred EEEccCCEEEEeeccceecchhc---chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 99999988 554332 2233457889999999999999999999997642 1 111111 1111
Q ss_pred cceeEEEeeC-------CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---
Q 020107 149 EFELWATSFD-------VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--- 218 (331)
Q Consensus 149 ~~~v~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--- 218 (331)
...+..+.|. |.+...++.+..+|.+.|..-.+......+.. ...+..+.|++ +|..|++++.+.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt----gm~~vgakWnh-~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT----GMKIVGAKWNH-NGAVLAVCGNDSDAD 283 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec----ccEeecceecC-CCcEEEEccCccccc
Confidence 2235566665 22557899999999999887766554444443 57899999999 999999998653
Q ss_pred ------eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 219 ------YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 219 ------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.|.+|..-. ..+.. +...+..|+.++|-.. ++-++-.-++.+.+-+++.
T Consensus 284 ~~~d~n~v~Fysp~G--~i~gt-lkvpg~~It~lsWEg~--gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 284 EPTDSNKVHFYSPYG--HIVGT-LKVPGSCITGLSWEGT--GLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred CccccceEEEeccch--hheEE-EecCCceeeeeEEcCC--ceEEEEEecceEEEEeecc
Confidence 455554332 22322 4566778999999877 5656666677666666554
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=7.7e-07 Score=70.93 Aligned_cols=267 Identities=12% Similarity=0.102 Sum_probs=167.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.-+++.|.. +.|-++.. .+..|.|..|.++.....+..+-+.- ..+-..++++++ +++|++
T Consensus 40 ~nptyl~~~~~~---~~LY~v~~-------~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~----g~~vf~ 105 (346)
T COG2706 40 GNPTYLAVNPDQ---RHLYVVNE-------PGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED----GRFVFV 105 (346)
T ss_pred CCCceEEECCCC---CEEEEEEe-------cCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC----CCEEEE
Confidence 445556666655 66766652 12378899999987533444442221 233478999999 899999
Q ss_pred EcCCccE--EEecCC---------CcccCc----------cEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeee
Q 020107 88 ADADGGL--LRDITG---------EKISSS----------MCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQW 145 (331)
Q Consensus 88 ~~~dg~i--iw~~~~---------~~~~~~----------~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~ 145 (331)
++..... +..+.. ...|.. -+....+.|++++|++..- --.|.+|++..+++.+....
T Consensus 106 AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 106 ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 8865443 443322 111222 2778899999999888765 55789999998876544332
Q ss_pred e-cccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCC-Cceeeeec---cc---CCCcceEEEEEecCCCCEEEEEec
Q 020107 146 K-AHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRES-PFKLAFQN---SK---IHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 146 ~-~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~~---~~---~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
. .....-+.+.|+| ++++.... --+++|.+|..... .....++. .+ ........|.++| ++++|+++..
T Consensus 186 ~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR 263 (346)
T COG2706 186 EVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR 263 (346)
T ss_pred ccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence 2 2345678999999 66665554 46899999998874 11222221 01 1245677899999 9999988763
Q ss_pred -CCeEEEEEecCCCCCceee--eeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEee-cCCcceeee
Q 020107 217 -DEYLRVWDVRSISKPVNET--SVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYA-KHGSLAYGA 291 (331)
Q Consensus 217 -d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 291 (331)
...|.+|.+......+... ...+........++|.+ .+|+++. ..+.+.++.+...++++-.... .......++
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 3478888887643333321 12233347889999997 5555555 4567888988887766554443 222333444
Q ss_pred ee
Q 020107 292 DW 293 (331)
Q Consensus 292 ~~ 293 (331)
.|
T Consensus 343 ~f 344 (346)
T COG2706 343 KF 344 (346)
T ss_pred EE
Confidence 44
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=90.88 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=121.7
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC----C
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI----S 229 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~ 229 (331)
.++|+-....+-++.+.+..+-+-|+.++. .+.|. ..+.|.++.|.. .++++..|+..|.|..+|+|.. .
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~-~qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGH-QQSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeeccc-ccccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCC
Confidence 446664222223556668888999999885 33444 377899999987 7899999999999999999975 2
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecCCCCcccccccCcE
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSL 308 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 308 (331)
.+... ..|...|+++..-......++++++++.|.+||++... +.-+.++.||...-.-+-+.-+ +.+..
T Consensus 290 ~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-------~eeg~ 360 (425)
T KOG2695|consen 290 WCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-------EEEGS 360 (425)
T ss_pred cceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-------cccce
Confidence 34444 78999999988776444889999999999999998752 3448889998765544444433 33479
Q ss_pred EEEeecCCCeEEEEcCCCcccC
Q 020107 309 VATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 309 l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
++++| +|...|||.+..+.+.
T Consensus 361 I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 361 IFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred EEEcc-CeeEEEEEecccCcee
Confidence 99999 9999999999988764
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=4.7e-07 Score=84.48 Aligned_cols=236 Identities=10% Similarity=0.063 Sum_probs=153.0
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EE----ecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LR----DITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw----~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
...|.++.|.++ ...++.+..+|.+ +. +...... -...|.+++|+||++.|+..+.++++.+.+..
T Consensus 75 ~~~ivs~~yl~d----~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLAD----SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCcEEEEEeccC----CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 356999999999 8889999999999 55 3333332 26789999999999999999999988776432
Q ss_pred c-------------cceeee--------eeeec------------------------ccceeEEEeeCCCCCcEEEEEcC
Q 020107 136 E-------------SQLEVL--------QQWKA------------------------HEFELWATSFDVHQPHMVYTGSD 170 (331)
Q Consensus 136 ~-------------~~~~~~--------~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~ 170 (331)
= +..+++ ..|.| ....-..++|-. |+.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~ 229 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSV 229 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEE
Confidence 0 000000 00100 222345788986 8888888764
Q ss_pred ------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCceeee--eec
Q 020107 171 ------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPVNETS--VCL 239 (331)
Q Consensus 171 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~--~~~ 239 (331)
-..+|||+-. |.....-.. -.+--.+++|.| .|+++|+.-. ...|.+|.-... +.-...+ ...
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~---v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGL-rhgeF~l~~~~~ 303 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEP---VDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGL-RHGEFTLRFDPE 303 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEecccc---CCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCc-EeeeEecCCCCC
Confidence 2578999966 442222111 233345789999 9999998865 345667765432 1111101 134
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
...|..++|++++ .+++.-..+.+.+|...+...-+.+.+.-. ...+..+.|+|..+ ..|.... .+|.
T Consensus 304 ~~~v~~l~Wn~ds--~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L~v~t-~~g~ 372 (928)
T PF04762_consen 304 EEKVIELAWNSDS--EILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRLHVLT-SNGQ 372 (928)
T ss_pred CceeeEEEECCCC--CEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEEEEEe-cCCc
Confidence 5679999999994 455556677799999888655556666532 33455599999876 5566655 5566
Q ss_pred EEEEc
Q 020107 319 LRIWM 323 (331)
Q Consensus 319 i~iW~ 323 (331)
+..++
T Consensus 373 ~~~~~ 377 (928)
T PF04762_consen 373 YEIYD 377 (928)
T ss_pred EEEEE
Confidence 65543
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=5e-07 Score=74.96 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=170.9
Q ss_pred EeeecCCCCCcEEEEEeecccCC-----CCCCCCCcEEEEeccCcccceEEeEeeecCc--Ee-EEEEcCCCCCCCCeEE
Q 020107 15 VEFCPQDSYHHVLAASTYTLQEG-----DKPSRNGSISLFNVNAEEKNLELLYRMDTAG--IF-DIKWSPVGGNAGPFLA 86 (331)
Q Consensus 15 v~~~~~~~~~~~la~g~~~~~~~-----~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~l~ 86 (331)
|.+..++|.+.||.+-.+....+ .-...++.+.+||..++. +...+.+-..+ .+ -+.|+-+ ..++|
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~Wp~~k~s~~----D~y~A 147 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGWPVLKFSID----DKYVA 147 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce--eEeeccccCCcccccceeeeeec----chhhh
Confidence 34444445559999998766521 111234479999999885 33333333333 33 6788888 55655
Q ss_pred EEcCCccEEEecCCCcc--------cCccEEEEEEcCCCCe--EEE-----EecCCeEEEEEccccceeeeeeeecccce
Q 020107 87 QADADGGLLRDITGEKI--------SSSMCLCLEWNPSATS--ITV-----GLSDGSVSIVSVVESQLEVLQQWKAHEFE 151 (331)
Q Consensus 87 ~~~~dg~iiw~~~~~~~--------~~~~v~~~~~~~~~~~--l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 151 (331)
--..+...+.++ +... ....+...+|+|.++. |+. ....+++++|.+..++....+.+.. ..
T Consensus 148 Rvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~ 224 (561)
T COG5354 148 RVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VS 224 (561)
T ss_pred hhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ec
Confidence 443333336665 3222 2356788889996543 443 3457889999998765544444432 22
Q ss_pred eEEEeeCCCCCcEEEEEc-----------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCC
Q 020107 152 LWATSFDVHQPHMVYTGS-----------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDE 218 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~ 218 (331)
-..+.|++ .+++++.-- ....+.+++++... ++.... ..++|...+|.| .++.+++.+ .+-
T Consensus 225 ~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~---~~~pVhdf~W~p-~S~~F~vi~g~~pa 298 (561)
T COG5354 225 GVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD---LKDPVHDFTWEP-LSSRFAVISGYMPA 298 (561)
T ss_pred ccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc---ccccceeeeecc-cCCceeEEeccccc
Confidence 34678887 444443211 12568888888544 332223 588999999999 766666554 788
Q ss_pred eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc---EEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG---FAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
.+.++|++.. +.. ......=..+.|+|.. ..++.+|.++. +.+|+.... ..++..+.+- ...-+.|+|
T Consensus 299 ~~s~~~lr~N---l~~--~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~--n~s~~~wsp 369 (561)
T COG5354 299 SVSVFDLRGN---LRF--YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGL--NTSYCDWSP 369 (561)
T ss_pred ceeecccccc---eEE--ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCc-eEEEEEeecC--CceEeeccC
Confidence 8999999973 332 4455566788999997 66677666543 344444332 3334345543 345678999
Q ss_pred CCCcccccccCcEEEEeec-----CCCeEEEEcCCCc
Q 020107 296 GRSSLEGKRKNSLVATCSF-----YDRLLRIWMPESD 327 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~-----~d~~i~iW~~~~~ 327 (331)
+++ ++.+.-. .|..|+||++...
T Consensus 370 d~q---------F~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 370 DGQ---------FYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred Cce---------EEEecCCCcccccCcceEEEEecCc
Confidence 994 5554421 5789999998643
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=5e-09 Score=83.92 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=105.0
Q ss_pred EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEE---ecCCeEEEEEecCC
Q 020107 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTG---SYDEYLRVWDVRSI 228 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~ 228 (331)
..+..++ ++.+++.+..+....+++.+.... ...+.... -...-+++.+.. +......+ +....+.+|....+
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 3444554 778888888888777777775442 11111111 122334455544 33333333 34445555555542
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCc
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
.+... .+|-+.++.++|+||+ ..++++-.|+.|++-+.... ..+..+- ||+.-|..++.-++.
T Consensus 143 -~~~~~--lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~---------- 206 (390)
T KOG3914|consen 143 -RCEPI--LGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNY---------- 206 (390)
T ss_pred -Ccchh--hhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCc----------
Confidence 33443 7999999999999997 77888888888777666553 4444443 899999999999985
Q ss_pred EEEEeecCCCeEEEEcCCCcccC
Q 020107 308 LVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
.|+|+| .|++|++||+.++.+.
T Consensus 207 ~LlS~s-GD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 207 LLLSGS-GDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeecC-CCCcEEEEecccCCcc
Confidence 789998 8999999999998654
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=4.6e-07 Score=86.04 Aligned_cols=240 Identities=8% Similarity=0.045 Sum_probs=144.1
Q ss_pred eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-ee------------cCcEeEEEEcCCCC
Q 020107 13 DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MD------------TAGIFDIKWSPVGG 79 (331)
Q Consensus 13 ~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~ 79 (331)
..|++.+.+ ++++++-+ .++.|+++|..... ...+.. +. -.....|++.++
T Consensus 571 ~gvavd~~~--g~lyVaDs----------~n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-- 634 (1057)
T PLN02919 571 GKLAIDLLN--NRLFISDS----------NHNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-- 634 (1057)
T ss_pred ceEEEECCC--CeEEEEEC----------CCCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCC--
Confidence 345555543 14555554 58899999986542 222211 11 123578889888
Q ss_pred CCCCeEEEEcCCc-cE-EEecCCCccc----------------------CccEEEEEEcCC-CCeEEEEecCCeEEEEEc
Q 020107 80 NAGPFLAQADADG-GL-LRDITGEKIS----------------------SSMCLCLEWNPS-ATSITVGLSDGSVSIVSV 134 (331)
Q Consensus 80 ~~~~~l~~~~~dg-~i-iw~~~~~~~~----------------------~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~ 134 (331)
+..|+++...+ .+ ..+..+.... -.....++++|+ +..+++...++.|++||.
T Consensus 635 --gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~ 712 (1057)
T PLN02919 635 --KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI 712 (1057)
T ss_pred --CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence 66666665544 34 4444332210 012357899995 445566667899999998
Q ss_pred cccceeeee------eeec------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----------cc
Q 020107 135 VESQLEVLQ------QWKA------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----------SK 192 (331)
Q Consensus 135 ~~~~~~~~~------~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~ 192 (331)
.++...... ...+ .-.....++++|+...++++-+.++.|++||+.++........ ..
T Consensus 713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 776432110 0000 0123457899984444667777889999999987642211100 00
Q ss_pred --------CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee------------eecCCceEEEEECCCC
Q 020107 193 --------IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS------------VCLGGGVWRIKHHPFI 252 (331)
Q Consensus 193 --------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~ 252 (331)
..-.....+++++ +++++++-..++.|++||..+. ......- ...-.....+++++++
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred CCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 0111346889999 8888888889999999999764 2221100 0111256789999997
Q ss_pred CCeEEEEEecCcEEEEEEcCc
Q 020107 253 PGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.++++-+.++.|++|++...
T Consensus 871 -~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 871 -RLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred -CEEEEECCCCEEEEEECCCC
Confidence 67777778888899988664
No 285
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.07 E-value=6.9e-09 Score=91.43 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=136.0
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
+...++.|+-...+..+|+++.+. .+...-....|.-+.. ++..+.+|...|+|.+-|.++.+.+..+.. |+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e--~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a---Hs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE--TRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDA---HS 217 (1118)
T ss_pred CCcceeecchhhheeeeeccccee--eeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeec---cc
Confidence 345677777777788899988654 2333223334666663 558899999999999999999988888887 99
Q ss_pred cceEEEEEecCCCCEEEEEec---------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 196 MGVCCIASIPSDSNTLLTGSY---------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
+.|..+.. .|+.|+++|. |..|++||+|+.+.... ........-++|+|.-...+++++..+...
T Consensus 218 ~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~~~~~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 218 GSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred cceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC---cccccCchhhhhcccccceEEEEeccccee
Confidence 99988877 6789999885 56689999999744333 233333466889998778888888888888
Q ss_pred EEE---EcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 267 VVK---VGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 267 ~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
+.+ +.+. ..-+..+......+.++++++++ +.||.+. .+|.|.+|.-
T Consensus 292 ~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~---------~alafgd-~~g~v~~wa~ 341 (1118)
T KOG1275|consen 292 FVDTATLSNP-PAGVKMVNPNGSGISAFDISSNG---------DALAFGD-HEGHVNLWAD 341 (1118)
T ss_pred eccccccCCC-ccceeEEccCCCcceeEEecCCC---------ceEEEec-ccCcEeeecC
Confidence 888 3332 12233333445569999999999 6999999 9999999983
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=5e-07 Score=77.36 Aligned_cols=222 Identities=8% Similarity=-0.035 Sum_probs=124.2
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe-EEEEcCCc-c--E-EEecCCCcc-----cCccEEEEEEc
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF-LAQADADG-G--L-LRDITGEKI-----SSSMCLCLEWN 114 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~dg-~--i-iw~~~~~~~-----~~~~v~~~~~~ 114 (331)
.|.+=|.+... .+.+... +....-.|+|+ ++. ++..+.++ . + ++++.+++. .........|+
T Consensus 170 ~l~~~d~dg~~--~~~~~~~--~~~~~p~wSpD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~S 241 (419)
T PRK04043 170 NIVLADYTLTY--QKVIVKG--GLNIFPKWANK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVS 241 (419)
T ss_pred eEEEECCCCCc--eeEEccC--CCeEeEEECCC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEEC
Confidence 45555554443 3333232 36778999999 763 66544442 3 3 777766543 23445567899
Q ss_pred CCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCC--eEEEEEccCCCceeee
Q 020107 115 PSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDC--KFSGWDIRESPFKLAF 188 (331)
Q Consensus 115 ~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg--~i~i~d~~~~~~~~~~ 188 (331)
|||+.++.... +..|.++|+.+++...+ ..+........|+| +++.| ++....+ .|.+.|+.+++.....
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L---T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI---TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCcEEEc---ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence 99987665433 45688888877754333 22232234567999 55544 4443434 6788888877643332
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecC---------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD---------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.. ... ...|+| +++.|+..+.. ..|.+.|+..+. ... +.. .+......|+|++...++++
T Consensus 318 ~~----g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~-LT~-~~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 318 FH----GKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRR-LTA-NGVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred cC----CCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEE-CCC-CCCcCCeEECCCCCEEEEEE
Confidence 21 111 248999 88887776643 267788887642 222 122 22334588999985444444
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
...+...++.+.-. +.....+....+.+..
T Consensus 387 ~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 387 YLGNQSALGIIRLN-YNKSFLFPLKVGKIQS 416 (419)
T ss_pred ccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence 33333334444433 4444444433344433
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.04 E-value=1.2e-07 Score=77.95 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=131.0
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---e---c-----CcEeEEE-EcCCCCCCCCeEEEEc
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---D---T-----AGIFDIK-WSPVGGNAGPFLAQAD 89 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~---~-----~~v~~~~-~~~~~~~~~~~l~~~~ 89 (331)
.+|..++... .|.|++||.++.. +..+--+ . . .+..-+. |++.+ +++++..+
T Consensus 276 sDGkrIvFq~-----------~GdIylydP~td~--lekldI~lpl~rk~k~~k~~~pskyledfa~~~---Gd~ia~VS 339 (668)
T COG4946 276 SDGKRIVFQN-----------AGDIYLYDPETDS--LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN---GDYIALVS 339 (668)
T ss_pred CCCcEEEEec-----------CCcEEEeCCCcCc--ceeeecCCccccccccccccCHHHhhhhhccCC---CcEEEEEe
Confidence 4556676664 8899999988764 3332111 0 0 1111222 44443 67888877
Q ss_pred CCccE---EEecCCCcc-cCccEEEEEEcCCCCeEEEEecCC-eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107 90 ADGGL---LRDITGEKI-SSSMCLCLEWNPSATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164 (331)
Q Consensus 90 ~dg~i---iw~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (331)
..... .|+-..-+. +...|.-..+..+++-++.|..|| .+-++|.++++. +.+...-+.|.++..+| +++.
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~-dGK~ 415 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSP-DGKK 415 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcC-CCcE
Confidence 65544 444333332 456677777888888999999999 899999998753 45556677899999998 8899
Q ss_pred EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC----eEEEEEecCC
Q 020107 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE----YLRVWDVRSI 228 (331)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~ 228 (331)
++.+.....|.+.|+.++.....-+. ..+-|+...|+| ++.++|-+--+| .|+++|+...
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS---~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKS---EYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEeccc---ccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 99999999999999999974433333 577899999999 999999876655 6899999874
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=7.2e-09 Score=83.03 Aligned_cols=154 Identities=16% Similarity=0.068 Sum_probs=107.9
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc
Q 020107 110 CLEWNPSATSITVGLSDGSVSIVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF 184 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~ 184 (331)
.+..++.++++|++..+....+++..... .++...... ...-+++.+.. .......+. +...+.+|....+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence 44567788899999988887777776543 222222221 22233444443 223333333 334455555554443
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
...+ . |-..++.++|+| |+.+++++..|..|++-.+... ..+..+..+|..-|..++.-++ ..++++++|+.
T Consensus 145 ~~~l-G---hvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 145 EPIL-G---HVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred chhh-h---hhhhhheeeecC-CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence 3332 3 899999999999 9999999999999999887763 5566667899999999999998 77999999999
Q ss_pred EEEEEEcCc
Q 020107 265 FAVVKVGGE 273 (331)
Q Consensus 265 ~~~~~~~~~ 273 (331)
+++|++...
T Consensus 217 lr~Wd~~sg 225 (390)
T KOG3914|consen 217 LRLWDITSG 225 (390)
T ss_pred EEEEecccC
Confidence 999999873
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.1e-07 Score=82.77 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=177.3
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCC--------CCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGN--------AGP 83 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~ 83 (331)
-.++.|+|.+ ++|.|+ ...|.+-|....+ .+.. ...|...|+.++|.|.+-- ..-
T Consensus 18 ~~A~Dw~~~G----LiAygs-----------hslV~VVDs~s~q-~iqs-ie~h~s~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 18 RNAADWSPSG----LIAYGS-----------HSLVSVVDSRSLQ-LIQS-IELHQSAVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred ccccccCccc----eEEEec-----------CceEEEEehhhhh-hhhc-cccCccceeEEEeccCCCchhccCccccce
Confidence 3466777765 899997 7788998887765 3333 3678899999999986311 133
Q ss_pred eEEEEcCCccE-EEecCCCc------ccCccEEEEEEcC---CC-CeEEEEecCCeEEEEEccccceeeeeeeeccccee
Q 020107 84 FLAQADADGGL-LRDITGEK------ISSSMCLCLEWNP---SA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL 152 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v 152 (331)
+||++...|.| +||..... .+..++..+.|-+ +. ..|++-.....|.+|+..+|+. +-.........
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--FWKYDYSHEIL 158 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--eeccccCCcce
Confidence 68888899999 99987643 3577888888876 33 4577777788999999999864 44444445567
Q ss_pred EEEeeCCCCCcEEEEEcCCCeEEEEEccCCC----ceeeeecccCCCc----------------c---------eEEEEE
Q 020107 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESP----FKLAFQNSKIHKM----------------G---------VCCIAS 203 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~----------------~---------v~~~~~ 203 (331)
.|+.+.|.+...+..-+..|.+.+-+.-..+ ..+.++....|.+ . ...++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 7899999888877777778888777653211 1222222112222 0 123456
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC-eEEEEEecCcEEEEEEcCcc--------
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG-LVLAACMHNGFAVVKVGGEK-------- 274 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------- 274 (331)
+|.-.+.+. ......+.++|++-. .++.. ..-..+.+.-+.+-|+... .+++.-.++.+.+|.-....
T Consensus 239 ~p~~rn~lf-i~~prellv~dle~~-~~l~v-vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 239 SPHWRNILF-ITFPRELLVFDLEYE-CCLAV-VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred ChhhhceEE-EEeccceEEEcchhh-ceeEE-EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 774344443 345677999999874 55554 2333445666777776544 44555566665555543321
Q ss_pred ------cceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 275 ------AEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 275 ------~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+.....+.. .+-........|..+ ..++..= .+|.+.+|.+.++.+
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~--------sa~avl~-s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTP--------SALAVLY-SSGDSTFWQLSNGRI 368 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCCh--------hhhhhhh-hcchhHHHhhhcCCc
Confidence 111111111 112233444555543 4444444 588899999987654
No 290
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=2.4e-06 Score=70.44 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=127.4
Q ss_pred CCCcEEEEeccCcccceEEeEeee------cCcEeEEEEcCCCCCCCCeEEEEcCC--ccE-EEecCCCcccCccEEEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMD------TAGIFDIKWSPVGGNAGPFLAQADAD--GGL-LRDITGEKISSSMCLCLE 112 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~l~~~~~d--g~i-iw~~~~~~~~~~~v~~~~ 112 (331)
++..|.+||..+.+ ....+..+. ......++++|+ +++|++...+ ..+ +.|+.+.+... .+.
T Consensus 75 ~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~d----gk~l~V~n~~p~~~V~VvD~~~~kvv~----ei~ 145 (352)
T TIGR02658 75 RTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPD----NKTLLFYQFSPSPAVGVVDLEGKAFVR----MMD 145 (352)
T ss_pred CCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCC----CCEEEEecCCCCCEEEEEECCCCcEEE----EEe
Confidence 57899999999986 444332211 112447899999 9999988754 555 88888876521 111
Q ss_pred EcCCCCeEEEE--------ecCCeEEEEEccccceeeeee---eecccceeEE-EeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107 113 WNPSATSITVG--------LSDGSVSIVSVVESQLEVLQQ---WKAHEFELWA-TSFDVHQPHMVYTGSDDCKFSGWDIR 180 (331)
Q Consensus 113 ~~~~~~~l~~~--------~~dg~i~i~d~~~~~~~~~~~---~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (331)
. |++..++.. +.||......+.+........ +.....++.. -.|.+.++.++..... |.|.+.|+.
T Consensus 146 v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 146 V-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred C-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence 1 333333333 345554444333311111111 1110000000 0334435566666555 999999965
Q ss_pred CCCc-----eeeeecc----cCCCcceEEEEEecCCCCEEEEEe----------cCCeEEEEEecCCCCCceeeeeecCC
Q 020107 181 ESPF-----KLAFQNS----KIHKMGVCCIASIPSDSNTLLTGS----------YDEYLRVWDVRSISKPVNETSVCLGG 241 (331)
Q Consensus 181 ~~~~-----~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~ 241 (331)
.... ...+... .-....+.-++++| +++.+++.. ..+.|.++|..+. +.+.. ..-..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~--i~vG~ 299 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRK--IELGH 299 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEE--EeCCC
Confidence 4322 2222110 01234445599999 777776642 1257999999885 44554 45567
Q ss_pred ceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEe
Q 020107 242 GVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (331)
.+..++++|+++..++++. .++.+.+++... .+.+.++
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t--~k~i~~i 338 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAET--GKELSSV 338 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC--CeEEeee
Confidence 8999999999853555554 567788888766 4666665
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.9e-09 Score=90.01 Aligned_cols=195 Identities=14% Similarity=0.090 Sum_probs=131.0
Q ss_pred EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCCCeEEEEecCC
Q 020107 62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
+.+|+..|..++--.+ ..-+++++.|.++ +|.+.... .|+.+|.++.|-.+.+++++ .||
T Consensus 731 f~GH~~~iRai~AidN----ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDN----ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG 804 (1034)
T ss_pred ccCcHHHhHHHHhccc----ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence 4678888888876666 6789999999999 99987532 26888999998887776654 578
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEE-cCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEE
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTG-SDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIAS 203 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~ 203 (331)
.|.+||.--++...........+.+..+..-|+ +...++++ +...+|+++|.|.......++.- ++...-+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999876654221122222233333433332 44555554 78899999999988766666552 334567899999
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV 267 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
.| .|+.++.+-..|+|.+.|.|++ +.+.. ..+.......++--.+ +.++.+..+..+.+
T Consensus 885 a~-~GN~lAa~LSnGci~~LDaR~G-~vINs-wrpmecdllqlaapsd--q~L~~saldHslaV 943 (1034)
T KOG4190|consen 885 AD-KGNKLAAALSNGCIAILDARNG-KVINS-WRPMECDLLQLAAPSD--QALAQSALDHSLAV 943 (1034)
T ss_pred cc-CcchhhHHhcCCcEEEEecCCC-ceecc-CCcccchhhhhcCchh--HHHHhhcccceeEe
Confidence 99 9999999999999999999996 33332 2333333444442222 44444445544433
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=4e-09 Score=79.76 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=100.6
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-----CCeEEEEEecCCCCCceee
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-----DEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~ 235 (331)
..+.++++..||.+.+++.+.- .+.....+.-...-.+.++.. .++.+.++.. -+..+.|+++..+..+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~- 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS- 175 (319)
T ss_pred cCCceEecCCCceEEEEechHH--Hhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeeccccccccccc-
Confidence 3467999999999999998862 111111011111122223333 3444444432 234667777764433333
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
......|.+++-+|....++++++.++.+.+|+.++. ..+...+..|+.+++.+-|+|..+ ..|++++ +
T Consensus 176 -~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p--------~~Lft~s-e 244 (319)
T KOG4714|consen 176 -KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNP--------EHLFTCS-E 244 (319)
T ss_pred -ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCc--------hheeEec-C
Confidence 2233449999999987566666666666778888776 455666789999999999999998 7899999 9
Q ss_pred CCeEEEEcCCCc
Q 020107 316 DRLLRIWMPESD 327 (331)
Q Consensus 316 d~~i~iW~~~~~ 327 (331)
||.+-.||..+.
T Consensus 245 dGslw~wdas~~ 256 (319)
T KOG4714|consen 245 DGSLWHWDASTT 256 (319)
T ss_pred CCcEEEEcCCCc
Confidence 999999998754
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=6.9e-06 Score=65.59 Aligned_cols=212 Identities=14% Similarity=0.076 Sum_probs=131.7
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK 146 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 146 (331)
++.|.+.. +.++++--..+.+ .|+..+... .......+.+...+..|+++...+ +.++|+.+++.+.+....
T Consensus 4 gp~~d~~~---g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRD---GRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCC---CEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 46777742 5666666667777 666666543 122367778873335566665544 455699888766665553
Q ss_pred --c-ccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE-EE
Q 020107 147 --A-HEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL-TG 214 (331)
Q Consensus 147 --~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~ 214 (331)
. .....+.+++.| ++++.++.... |.|..++.. ++...... .-...+.|+|+| +++.|+ +-
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----~~~~pNGi~~s~-dg~~lyv~d 152 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----GLGFPNGIAFSP-DGKTLYVAD 152 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----EESSEEEEEEET-TSSEEEEEE
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec----CcccccceEECC-cchheeecc
Confidence 1 346788999998 77777765533 557777776 44333332 345678999999 887655 66
Q ss_pred ecCCeEEEEEecCCCCCcee--eeee-cC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107 215 SYDEYLRVWDVRSISKPVNE--TSVC-LG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY 289 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~--~~~~-~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 289 (331)
+..+.|..+++......+.. .+.. .. +..-.+++..++ .++++....+.+ +.+... ++.+..+.-....++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I--~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRI--VVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE--EEEETT-SCEEEEEE-SSSSEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEE--EEECCC-ccEEEEEcCCCCCEE
Confidence 67889999999754332221 1111 12 247789999986 566555556664 444444 677777775556899
Q ss_pred eeeec-CCC
Q 020107 290 GADWQ-RGR 297 (331)
Q Consensus 290 ~~~~~-~~~ 297 (331)
+++|. ++.
T Consensus 229 ~~~fgg~~~ 237 (246)
T PF08450_consen 229 NCAFGGPDG 237 (246)
T ss_dssp EEEEESTTS
T ss_pred EEEEECCCC
Confidence 99994 454
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.9e-07 Score=81.33 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=166.2
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE------EEecCCCcccCccEEEEEEcCCC------------CeEEEEecCCe
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL------LRDITGEKISSSMCLCLEWNPSA------------TSITVGLSDGS 128 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i------iw~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~ 128 (331)
..-.++.|+|.+ +||-|+..-.. +.-++.-+.|+..|+.+.|.|-. -.||++...|.
T Consensus 16 sN~~A~Dw~~~G-----LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-----LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-----eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336788999984 77777766554 33344455688999999998721 24777778999
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCC--C-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVH--Q-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
|.+||...+.. +..+..+..++..++|-|. + ...|++-....++.+|+..+|+....... ......|+.+.|
T Consensus 91 Iil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y---s~~iLs~f~~DP 165 (1062)
T KOG1912|consen 91 IILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY---SHEILSCFRVDP 165 (1062)
T ss_pred EEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc---CCcceeeeeeCC
Confidence 99999987644 5667778889999999863 2 36777778889999999999986655554 456678899999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCCC---Ccee--eeeecCC-------------------------ceEEEEECCCCCCe
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSISK---PVNE--TSVCLGG-------------------------GVWRIKHHPFIPGL 255 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~~~-------------------------~v~~~~~~~~~~~~ 255 (331)
++...+..-+..|.+.+-+.-.... +.++ +...|.. -...++|+|.-++.
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 9988888888888888776643221 1111 1112221 01236788987565
Q ss_pred EEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 256 VLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++++ ....+.++++.-+ ..+....-..+.+-=++|-|+.. ...|...- .||.+.+|-...
T Consensus 246 lfi~-~prellv~dle~~--~~l~vvpier~~akfv~vlP~~~-------rd~LfclH-~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 246 LFIT-FPRELLVFDLEYE--CCLAVVPIERGGAKFVDVLPDPR-------RDALFCLH-SNGRLTIRVRKE 305 (1062)
T ss_pred EEEE-eccceEEEcchhh--ceeEEEEeccCCcceeEeccCCC-------cceEEEEe-cCCeEEEEEeec
Confidence 5554 5677778887664 55555554455566678888753 25777777 899999997654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=7.4e-06 Score=65.42 Aligned_cols=217 Identities=14% Similarity=0.045 Sum_probs=134.9
Q ss_pred eeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107 13 DAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG 92 (331)
Q Consensus 13 ~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 92 (331)
.++.|.+... .++.+-. ..+.|+.|+..+.. ...+ .......+++... +..|+.+...+
T Consensus 3 Egp~~d~~~g--~l~~~D~----------~~~~i~~~~~~~~~--~~~~---~~~~~~G~~~~~~----~g~l~v~~~~~ 61 (246)
T PF08450_consen 3 EGPVWDPRDG--RLYWVDI----------PGGRIYRVDPDTGE--VEVI---DLPGPNGMAFDRP----DGRLYVADSGG 61 (246)
T ss_dssp EEEEEETTTT--EEEEEET----------TTTEEEEEETTTTE--EEEE---ESSSEEEEEEECT----TSEEEEEETTC
T ss_pred cceEEECCCC--EEEEEEc----------CCCEEEEEECCCCe--EEEE---ecCCCceEEEEcc----CCEEEEEEcCc
Confidence 4567777432 6666665 68999999998874 3222 1223777788843 23555555555
Q ss_pred cEEEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecC--------CeEEEEEccccceeeeeeeecccceeE
Q 020107 93 GLLRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSD--------GSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 93 ~iiw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
..+.+..+++. .....+.+++.++|++.++.... |.|..++.. ++.. .+...-...+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~---~~~~~~~~pN 137 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT---VVADGLGFPN 137 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE---EEEEEESSEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE---EEecCccccc
Confidence 55456555422 34567889999999976665543 567777776 4432 2222344578
Q ss_pred EEeeCCCCCc-EEEEEcCCCeEEEEEccCCCc----eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 154 ATSFDVHQPH-MVYTGSDDCKFSGWDIRESPF----KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 154 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.++|+| +++ ++++-+..+.|..+++..... ...+..........-.+++.. ++++.++....+.|.++|.+ +
T Consensus 138 Gi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G 214 (246)
T PF08450_consen 138 GIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-G 214 (246)
T ss_dssp EEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-S
T ss_pred ceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-c
Confidence 999999 555 556778889999999975432 122222121223478899999 89888887788999999987 3
Q ss_pred CCCceeeeeecCCceEEEEEC-CCCCCeEEEE
Q 020107 229 SKPVNETSVCLGGGVWRIKHH-PFIPGLVLAA 259 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 259 (331)
+.+..+..+ ...+++++|. ++...+++++
T Consensus 215 -~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 215 -KLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred -cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 445543333 3589999994 5553455544
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.8e-09 Score=89.06 Aligned_cols=207 Identities=13% Similarity=0.105 Sum_probs=136.2
Q ss_pred cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
|...|..++--.+.+.+++++.|.+|++|.++. +...+..+++.|..+|.++.|-. +...+++ .||.|++||
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHlWD 810 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHLWD 810 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCcceeec
Confidence 444555554444667899999999999999875 22235667889999999999986 5555554 489999999
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecC-CCCEEEE-EecCCeEEEEEecCCCCCceeee----eecCCceEEEEECCCC
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLT-GSYDEYLRVWDVRSISKPVNETS----VCLGGGVWRIKHHPFI 252 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~ 252 (331)
.--++....+...+.| +.+..+..-|. +..++.. ++...+|+++|.|..+- ..++. ...++.+.+++..|.|
T Consensus 811 PFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEeccCc
Confidence 9877765544432222 22333333331 3444444 47889999999998532 22211 1233568889999987
Q ss_pred CCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE-EcCCCccc
Q 020107 253 PGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI-WMPESDCL 329 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i-W~~~~~~~ 329 (331)
+.++++-+.+.+.+.+.++ +..+..++.-......++- |.+ +.++... .|.++.+ |..-++.+
T Consensus 889 -N~lAa~LSnGci~~LDaR~--G~vINswrpmecdllqlaa-psd---------q~L~~sa-ldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 889 -NKLAAALSNGCIAILDARN--GKVINSWRPMECDLLQLAA-PSD---------QALAQSA-LDHSLAVNWHALDGIM 952 (1034)
T ss_pred -chhhHHhcCCcEEEEecCC--CceeccCCcccchhhhhcC-chh---------HHHHhhc-ccceeEeeehhcCCee
Confidence 6666666778866666665 6777777665554444442 333 5777777 7888888 87766643
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=5.6e-09 Score=82.12 Aligned_cols=162 Identities=11% Similarity=0.087 Sum_probs=110.2
Q ss_pred EEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC-----ceeeeecccCCC
Q 020107 121 TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP-----FKLAFQNSKIHK 195 (331)
Q Consensus 121 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~ 195 (331)
++.+.+-.|.+-+++++-. ..+. ....|.++.|.- ..+++..|.++|.|..+|+|... +...+. |.
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly----h~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY----HD 298 (425)
T ss_pred ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE----cC
Confidence 4555667788889988642 3343 566799999985 78999999999999999999762 122222 89
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEE--CCCCCCeEEEEEecCcEEEEEEc
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKH--HPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
..|+++.....++.+|++.+.+|+|++||+|..+.. +.+ ..+|-..-.-+-+ .+. ++.++++|.|--.++|.+.
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q-YeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ-YEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee-eecccccccccccccccc-cceEEEccCeeEEEEEecc
Confidence 999999887767889999999999999999985432 222 2344332222222 233 3677777766667888888
Q ss_pred CcccceeEEeecC----CcceeeeeecC
Q 020107 272 GEKAEVLETYAKH----GSLAYGADWQR 295 (331)
Q Consensus 272 ~~~~~~~~~~~~h----~~~v~~~~~~~ 295 (331)
. +.++.++.-. ...+.+++|..
T Consensus 377 ~--ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 377 S--GHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred c--CceeeccCCCCccccccccceehhc
Confidence 7 5666666532 22344555543
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.93 E-value=3.2e-06 Score=65.51 Aligned_cols=190 Identities=16% Similarity=0.248 Sum_probs=122.4
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce-EEe--EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEe
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL-ELL--YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRD 97 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~-~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~ 97 (331)
++|++||+-. |..|.|=...+.-..+ ... .+.....-+.++|||+ +.+||.+...|++ ++|
T Consensus 7 ~~Gk~lAi~q-----------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD----~tlLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 7 SDGKLLAILQ-----------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD----CTLLAYAESTGTIRVFD 71 (282)
T ss_pred CCCcEEEEEe-----------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC----CcEEEEEcCCCeEEEEe
Confidence 4558888886 8888887766543222 222 1212334789999999 9999999999999 777
Q ss_pred cCCCcc------------cCccEEEEEEcCCC------CeEEEEecCCeEEEEEcccc---ceeeeeee--e-cccceeE
Q 020107 98 ITGEKI------------SSSMCLCLEWNPSA------TSITVGLSDGSVSIVSVVES---QLEVLQQW--K-AHEFELW 153 (331)
Q Consensus 98 ~~~~~~------------~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~--~-~~~~~v~ 153 (331)
+.+..+ -...|..+.|.+.. ..|++-...|.++-|-+..+ +......+ . .+...|.
T Consensus 72 l~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 72 LMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred cccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 765433 13456666665422 24677777888888776432 22222222 2 2356899
Q ss_pred EEeeCCCCCcEEEEEcC-C----------CeEEEEEccCCCcee-----------------------e---eecccCCCc
Q 020107 154 ATSFDVHQPHMVYTGSD-D----------CKFSGWDIRESPFKL-----------------------A---FQNSKIHKM 196 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~-d----------g~i~i~d~~~~~~~~-----------------------~---~~~~~~~~~ 196 (331)
++.++| .-++|+.|+. . .-+.-|.+-++..-. . +........
T Consensus 152 ~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d 230 (282)
T PF15492_consen 152 SAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD 230 (282)
T ss_pred EEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCC
Confidence 999999 5466665542 1 135566554322100 0 000012366
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.|..|..+| ++..||+...+|.|.+|++.+.
T Consensus 231 ~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 231 GIFKMSLSP-DGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ceEEEEECC-CCCEEEEEEcCCeEEEEecCcc
Confidence 799999999 9999999999999999999875
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=4.5e-09 Score=57.35 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=36.1
Q ss_pred cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
++++.++.+|.+.|++++|+|++ .+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~---------~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG---------NFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS---------SEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc---------ccceeeC-CCCEEEEEC
Confidence 36788999999999999999998 7999999 999999997
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.86 E-value=6.5e-06 Score=70.27 Aligned_cols=260 Identities=11% Similarity=0.023 Sum_probs=138.0
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
..+.+++ .+|.+..+|..+++...+..... ........ + +..+++++.+|.+ .++..+++.
T Consensus 66 ~~v~v~~----------~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v--~----~~~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 66 GKVYAAD----------ADGTVVALDAETGKRLWRVDLDE--RLSGGVGA--D----GGLVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred CEEEEEC----------CCCeEEEEEccCCcEeeeecCCC--CcccceEE--c----CCEEEEEcCCCEEEEEECCCCcE
Confidence 4566665 58899999988776222211111 11111111 2 4467777777777 555544332
Q ss_pred c-----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-----EEEeeCCCCCcEEEEEcCCCe
Q 020107 104 S-----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL-----WATSFDVHQPHMVYTGSDDCK 173 (331)
Q Consensus 104 ~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~ 173 (331)
. ...+.+.... .+..+++++.+|.|..+|.++++. +-.+....... .+.... + ..++.+..++.
T Consensus 128 ~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~ 201 (377)
T TIGR03300 128 LWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER--LWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGK 201 (377)
T ss_pred eeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce--eeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCE
Confidence 1 1111110000 345778888899999999998764 32222211111 011111 2 46778888899
Q ss_pred EEEEEccCCCceeeeecccCCC-cc---eEEEEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEE
Q 020107 174 FSGWDIRESPFKLAFQNSKIHK-MG---VCCIASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKH 248 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~-~~---v~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 248 (331)
+..+|.++++............ .. ...+.-+| ..+..+++++.+|.+..||.++++. +.. ..... ......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~--~~~~~-~~~p~~ 277 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWK--RDASS-YQGPAV 277 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEe--eccCC-ccCceE
Confidence 9999999887544332200000 00 00010011 0245778888899999999988643 222 12211 112222
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+ +.+++...++.+..++... ++.+........ ....... .+ ..|+.++ .+|.|+++|..++
T Consensus 278 --~~-~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i--~g---------~~l~~~~-~~G~l~~~d~~tG 340 (377)
T TIGR03300 278 --DD-NRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV--VG---------GYLVVGD-FEGYLHWLSREDG 340 (377)
T ss_pred --eC-CEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE--EC---------CEEEEEe-CCCEEEEEECCCC
Confidence 22 5666666777766666644 455444321111 1111111 22 4778888 8999999999887
Q ss_pred cc
Q 020107 328 CL 329 (331)
Q Consensus 328 ~~ 329 (331)
.+
T Consensus 341 ~~ 342 (377)
T TIGR03300 341 SF 342 (377)
T ss_pred CE
Confidence 64
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.85 E-value=5e-06 Score=76.28 Aligned_cols=257 Identities=11% Similarity=0.007 Sum_probs=140.4
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.++.|.... +-+..+. ..|.|.+-|..+.. +... ..-..+|.+++|+|+ ++.++..+.
T Consensus 70 ~i~s~~fl~d~---~~i~v~~----------~~G~iilvd~et~~--~eiv-g~vd~GI~aaswS~D----ee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADT---NSICVIT----------ALGDIILVDPETLE--LEIV-GNVDNGISAASWSPD----EELLALITG 129 (1265)
T ss_pred ceEEEEEeccc---ceEEEEe----------cCCcEEEEcccccc--eeee-eeccCceEEEeecCC----CcEEEEEeC
Confidence 45566666655 5555565 69999999887764 4444 334678999999999 999999999
Q ss_pred CccEEEecCCCccc-CccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee---eeeeee-----cccceeEEEeeCCCC
Q 020107 91 DGGLLRDITGEKIS-SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE---VLQQWK-----AHEFELWATSFDVHQ 161 (331)
Q Consensus 91 dg~iiw~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-----~~~~~v~~~~~~~~~ 161 (331)
.++++........- ..+. ...-.+.++.+ .++....=.-+.-..++.. .+...+ .....=+.+.|-- +
T Consensus 130 ~~tll~mT~~f~~i~E~~L-~~d~~~~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-D 206 (1265)
T KOG1920|consen 130 RQTLLFMTKDFEPIAEKPL-DADDERKSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-D 206 (1265)
T ss_pred CcEEEEEeccccchhcccc-ccccccccccc-eecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-C
Confidence 88883332221110 0111 11111222222 2222111111111111110 000000 0111234688985 8
Q ss_pred CcEEEEE-----cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107 162 PHMVYTG-----SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 162 ~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~ 233 (331)
+.++++. .....|++||.. +. ...... .....=.+++|-| .|..+++-. .|+.|.+|.-.....--.
T Consensus 207 g~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se--~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f 281 (1265)
T KOG1920|consen 207 GEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSE--PVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEF 281 (1265)
T ss_pred CcEEEEEEEeccCCceeEEEeccc-ch-hhcccC--cccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCcccccc
Confidence 8888873 333799999987 43 222221 0233446799999 888888864 456788887654322111
Q ss_pred ee-eeecCCceEEEEECCCCCCeEEE---EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 234 ET-SVCLGGGVWRIKHHPFIPGLVLA---ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 234 ~~-~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
.+ +.....++..++|+.++ ..+++ ......+++|.+.+...-+.+.+.-..... +.|+|..+
T Consensus 282 ~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~ 347 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTE 347 (1265)
T ss_pred ccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCc
Confidence 10 12223349999999986 44443 223344888888776544445554333332 77887654
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.4e-07 Score=80.05 Aligned_cols=182 Identities=12% Similarity=0.031 Sum_probs=123.7
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceee
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 141 (331)
..+.+++++.. +|+-|+.+|.+ +.+..... .|... ..+|+++++++.||.|.|..+-+.+.
T Consensus 40 D~is~~av~~~------~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-- 105 (846)
T KOG2066|consen 40 DAISCCAVHDK------FFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-- 105 (846)
T ss_pred hHHHHHHhhcc------eeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence 45778887755 99999999999 66554432 12111 56899999999999999999887754
Q ss_pred eeeeecccceeEEEeeCCC----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 142 LQQWKAHEFELWATSFDVH----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
...+. -..++.+++++|+ ....+++|+.-| +.++.-+--........ ..-.++|.++.| .++++|-++.+
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l-~~~eG~I~~i~W---~g~lIAWand~ 179 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL-SEGEGPIHSIKW---RGNLIAWANDD 179 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee-ecCccceEEEEe---cCcEEEEecCC
Confidence 33333 3457999999995 356899999888 76765442211111112 226789999999 57899999877
Q ss_pred CeEEEEEecCCCCCceeeeeecC-----CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 218 EYLRVWDVRSISKPVNETSVCLG-----GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
| |++||.... +.+..+..++. .-...+.|.++ ..++. |-.+.+.+..+...
T Consensus 180 G-v~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVI-GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 180 G-VKVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVI-GWGDSVKICSIKKR 235 (846)
T ss_pred C-cEEEecccc-ceeeccCCCCCCCCcccCCCceEecCC--CeEEE-ecCCeEEEEEEecc
Confidence 7 999999874 33333222221 12356888887 55544 46677888888843
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.83 E-value=5.9e-06 Score=70.53 Aligned_cols=244 Identities=14% Similarity=0.057 Sum_probs=130.6
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeE-EEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEE-----
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFD-IKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCL----- 109 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~----- 109 (331)
.+|.++.+|..+++...+.. -...+.+ ... . +..++.+..+|.+ .+|..+++.. ..+..
T Consensus 113 ~~g~l~ald~~tG~~~W~~~---~~~~~~~~p~v--~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAK---LSSEVLSPPLV--A----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CCCEEEEEECCCCcEeeeec---cCceeecCCEE--E----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 58999999988775222211 1111211 111 1 2356666667776 5555443320 00100
Q ss_pred -EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc--ce---eEEEeeCC-CCCcEEEEEcCCCeEEEEEccCC
Q 020107 110 -CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE--FE---LWATSFDV-HQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 110 -~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~---v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
+... .+..++.+..+|.+..+|+++++..-...+.... .. ...+.-+| -.+..++.++.+|.+..+|..++
T Consensus 184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 0111 1246788888999999999887642111111000 00 00111111 02356777888999999999988
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeEEEEEe
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~ 261 (331)
+....... . ....... .+..+++++.||.+..+|..+++ .+-.. ...... ...... .+ +.+++.+.
T Consensus 262 ~~~W~~~~----~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~tG~-~~W~~-~~~~~~~~ssp~i--~g-~~l~~~~~ 328 (377)
T TIGR03300 262 RVLWKRDA----S-SYQGPAV---DDNRLYVTDADGVVVALDRRSGS-ELWKN-DELKYRQLTAPAV--VG-GYLVVGDF 328 (377)
T ss_pred cEEEeecc----C-CccCceE---eCCEEEEECCCCeEEEEECCCCc-EEEcc-ccccCCccccCEE--EC-CEEEEEeC
Confidence 75443332 1 1112222 45678888899999999998863 33221 111111 122222 12 56777777
Q ss_pred cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
++.+.+++... ++.+.++..+...+..--...++ .|+.++ .||.|+.+
T Consensus 329 ~G~l~~~d~~t--G~~~~~~~~~~~~~~~sp~~~~~----------~l~v~~-~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSRED--GSFVARLKTDGSGIASPPVVVGD----------GLLVQT-RDGDLYAF 376 (377)
T ss_pred CCEEEEEECCC--CCEEEEEEcCCCccccCCEEECC----------EEEEEe-CCceEEEe
Confidence 78766666544 78887777655444333233333 466666 79999876
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=2.5e-09 Score=90.72 Aligned_cols=199 Identities=17% Similarity=0.162 Sum_probs=134.3
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcC-CCCeEEEEec----CCeEEE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNP-SATSITVGLS----DGSVSI 131 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~i 131 (331)
...+.|++++.+.. ..++++|..+|.| +-..... ..+..++++++|++ |.+.||+|-. |..+.|
T Consensus 56 tqy~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 45588888877632 4689999999999 4433321 12467889999998 4566777743 678999
Q ss_pred EEccccceeee--eeeec-ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107 132 VSVVESQLEVL--QQWKA-HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 132 ~d~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 208 (331)
||+.+.--.|. ..+.+ ......+++|-. +.+++.+|.....++++|+|..... .... .+..+..+.+.|..+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~-~~sv---nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS-VSSV---NTKYVQGITVDPFSP 208 (783)
T ss_pred eecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh-hhhh---hhhhcccceecCCCC
Confidence 99987511111 11222 334556888885 7788999999999999999954322 2222 355677788899888
Q ss_pred CEEEEEecCCeEEEEE-ecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEEec-CcEEEEEEcC
Q 020107 209 NTLLTGSYDEYLRVWD-VRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKVGG 272 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 272 (331)
+++++-. |+.|.+|| .++.+.++..... .....+..++|+|...+++++...+ ..|+.+++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 9988876 99999999 6766666655211 1123589999999886766665544 3445565543
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.4e-08 Score=79.36 Aligned_cols=210 Identities=11% Similarity=0.002 Sum_probs=140.5
Q ss_pred cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCeEEEEEccC
Q 020107 104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCKFSGWDIRE 181 (331)
Q Consensus 104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 181 (331)
|...|+.+ +....+++.+++-||.++.|.... .-.+.+..+..|...+.+++.+- ++.++.+.+. |..++++|+.+
T Consensus 8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 44445544 334567899999999999998765 33455677788999999999885 8888888777 99999999987
Q ss_pred CCceeeeecccCCCcceEEEEEecCCC--C-EEEE-EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDS--N-TLLT-GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
-.....+.. ......+.|....+ . .+++ .-.++.+.++|-+....+......-|..+|..+.+.+.+ ..++
T Consensus 86 ~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~v 160 (558)
T KOG0882|consen 86 FDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAV 160 (558)
T ss_pred cchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-ccee
Confidence 665444443 22222333332122 1 3333 346789999999876555555457899999999999986 3343
Q ss_pred EEEecCcEEEEEEcCc----ccceeEE---------eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 258 AACMHNGFAVVKVGGE----KAEVLET---------YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 258 ~~~~~~~~~~~~~~~~----~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
+....+-+..|..... ..++... +.-......++.|+|++ ..+.+-+ .|..|+++++
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g---------~qistl~-~DrkVR~F~~ 230 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG---------AQISTLN-PDRKVRGFVF 230 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc---------CcccccC-cccEEEEEEe
Confidence 4333343344443310 0111111 11234567889999999 6899999 9999999999
Q ss_pred CCcccC
Q 020107 325 ESDCLT 330 (331)
Q Consensus 325 ~~~~~~ 330 (331)
.++.+.
T Consensus 231 KtGklv 236 (558)
T KOG0882|consen 231 KTGKLV 236 (558)
T ss_pred ccchhh
Confidence 888653
No 306
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.80 E-value=1.9e-09 Score=91.47 Aligned_cols=206 Identities=16% Similarity=0.174 Sum_probs=137.8
Q ss_pred ccEEEEEEcCCC--CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCeEEEEEc
Q 020107 106 SMCLCLEWNPSA--TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCKFSGWDI 179 (331)
Q Consensus 106 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~i~d~ 179 (331)
..+.|+++..+. ..+++|..+|.|.+-..+......-....++....++++|++-+.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345567665543 4688999999999998876433223344567889999999998778888875 4568999999
Q ss_pred cCC--CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107 180 RES--PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 180 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
.+. .+........+......+++|.. +.+++.+|.....++++|+|....... .-....+..+...|-..++ +
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~---svnTk~vqG~tVdp~~~nY-~ 211 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS---SVNTKYVQGITVDPFSPNY-F 211 (783)
T ss_pred ccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh---hhhhhhcccceecCCCCCc-e
Confidence 876 22222221111344566899987 888999999999999999995311111 2233355667777744344 4
Q ss_pred EEEecCcEEEEE-EcCcccceeEEeecCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 258 AACMHNGFAVVK-VGGEKAEVLETYAKHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
++..++-+.+|+ ..+. ..++..+...+ ..+..++|+|... .++++.....++|+++++.
T Consensus 212 cs~~dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPtrt--------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 212 CSNSDGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPTRT--------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eccccCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccCCc--------chhhhhccCcceEEEeccc
Confidence 555688888888 3332 22333222222 2489999999876 7888888566899999974
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=3.8e-08 Score=53.61 Aligned_cols=38 Identities=16% Similarity=0.437 Sum_probs=35.2
Q ss_pred eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
+++..+.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 45788999999999999999 789999999999999997
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.6e-06 Score=74.48 Aligned_cols=197 Identities=12% Similarity=0.186 Sum_probs=132.4
Q ss_pred EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccce-eEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCC--
Q 020107 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFE-LWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESP-- 183 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~-- 183 (331)
+|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+ +.-++.++|++.+.|+ .|++||+...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 467888999999999999888743 2335677777766 4444 3333556787777654 58999997531
Q ss_pred ----ce---eeeec-ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeeeeecCCceEEEEECCCCC
Q 020107 184 ----FK---LAFQN-SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETSVCLGGGVWRIKHHPFIP 253 (331)
Q Consensus 184 ----~~---~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (331)
+. ..+.. .+....++.+++.+. +-..+|.|-.+|.|.++.-+-. +............+|+.+++..++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 22 11221 122467789999998 7888999999999998843221 1112222345577999999999875
Q ss_pred CeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 254 GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..++++ ....+.++.+...+ .....+..|...+.+..+++..+ .++.++ +..|.+|+.+.
T Consensus 185 s~lFv~-Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~---------qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 185 SVLFVA-TTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTY---------QFICAG--SEFLYFYDSDG 244 (933)
T ss_pred eeEEEE-ecceeEEEEecCCC-cceeeeccCCccceeeecCCCCc---------cEEEec--CceEEEEcCCC
Confidence 533333 45667888888653 44566778888899999988763 344444 67888888764
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.74 E-value=1.6e-06 Score=73.69 Aligned_cols=109 Identities=17% Similarity=0.290 Sum_probs=82.6
Q ss_pred CcEeEEEEcCCCCCCCCeEEEE----cCCccE-----EEecCCCcc---------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQA----DADGGL-----LRDITGEKI---------SSSMCLCLEWNPSATSITVGLSDGS 128 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~----~~dg~i-----iw~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~ 128 (331)
....++.|+-..+ ..+.+. +.+|.+ ++++...+. .++.+.+++++|+.+.++.|+.||+
T Consensus 206 ~dPl~~~Fs~~~~---~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 206 NDPLDVEFSLNQP---YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred CCcEEEEccCCCC---cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 3457888887643 344442 345555 777766544 3677889999999999999999999
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
|.+||...+. ..+....-..+.++|+| ++..+++|+..|.+.+||+.-..
T Consensus 283 iiLyD~~~~~----t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 283 IILYDTTRGV----TLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEEcCCCe----eeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9999987653 22333456688999999 88999999999999999997554
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.1e-05 Score=69.28 Aligned_cols=197 Identities=8% Similarity=0.024 Sum_probs=109.3
Q ss_pred cEEEEEEcCCCCe-EEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEcc
Q 020107 107 MCLCLEWNPSATS-ITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIR 180 (331)
Q Consensus 107 ~v~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~ 180 (331)
......|+|+++. ++..+. +..|.++|+.+++...+.. ..+......|+|+...++++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 5678899999985 554433 3568999998876544433 334455678999444455555444 568888887
Q ss_pred CCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107 181 ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
++.. ..+.. +........|+| +++.|+..+ ..+ .|.+.|+..++. ...... +. ....|+|+++.+++
T Consensus 266 ~g~~-~~LT~---~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~--g~-~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 266 TKTL-TQITN---YPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH--GK-NNSSVSTYKNYIVY 335 (419)
T ss_pred CCcE-EEccc---CCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccC--CC-cCceECCCCCEEEE
Confidence 7763 33333 233334567999 887666655 333 577777766432 121111 11 23589999844444
Q ss_pred EEEec------CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC--eEEEEcCCCc
Q 020107 258 AACMH------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR--LLRIWMPESD 327 (331)
Q Consensus 258 ~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~--~i~iW~~~~~ 327 (331)
+.... +...++-+.-..+. ...+... .......|+|++ +.|+-.+...+ .|.+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~-~~~~~p~~SPDG---------~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDY-IRRLTAN-GVNQFPRFSSDG---------GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCC-eEECCCC-CCcCCeEECCCC---------CEEEEEEccCCcEEEEEEecCCC
Confidence 44322 21234443322222 2333332 223358899999 45544431222 3556666543
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.8e-06 Score=74.53 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=128.7
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
..+.|+++ .++.|+.|+.+|.|++++.... + .....|... . .++.++++|+.||+|.|-.+-+.+..
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCc---c-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccc
Confidence 34455555 3578999999999999997643 1 233334433 3 47899999999999999999988876
Q ss_pred eeeecccCCCcceEEEEEecC----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 186 LAFQNSKIHKMGVCCIASIPS----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
..+.. ..++.+|+++|+ ..+.+++||.-| +.++.-+-.+...........|+|.++.|..+ +++=.+
T Consensus 107 ~~~df----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~----lIAWan 177 (846)
T KOG2066|consen 107 TQYDF----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN----LIAWAN 177 (846)
T ss_pred eeEec----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc----EEEEec
Confidence 66665 778999999993 257899999988 87776554333222234677899999999954 667778
Q ss_pred cCcEEEEEEcCcccceeEEeecCCc------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 262 HNGFAVVKVGGEKAEVLETYAKHGS------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+.|+++++.... +.+..+..... .-..+.|.+.. .|+.| +.-+|+|..+.
T Consensus 178 d~Gv~vyd~~~~--~~l~~i~~p~~~~R~e~fpphl~W~~~~----------~LVIG--W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTR--QRLTNIPPPSQSVRPELFPPHLHWQDED----------RLVIG--WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEecccc--ceeeccCCCCCCCCcccCCCceEecCCC----------eEEEe--cCCeEEEEEEe
Confidence 999999998774 33333332111 22357787775 44444 46678887776
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5e-07 Score=72.85 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=81.3
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 208 (331)
+++.+..+ +.....+.++...|.+++|+|.+..++..++.+.+|+|.|+++......+.. + ..+.+++|.-++.
T Consensus 175 v~~l~~~~--fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHD--FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCC--cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCc
Confidence 44444433 2334456678889999999997766899999999999999999887777776 4 7899999998778
Q ss_pred CEEEEEecCCeEEEEEecCCCCCcee
Q 020107 209 NTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
++++.|-..|.|.+||++..+.++.+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e 274 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLME 274 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhh
Confidence 89999999999999999997766655
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=5.3e-06 Score=70.65 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=101.2
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCe----EEEEEccCCCceeeeecccCCCcceEE
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCK----FSGWDIRESPFKLAFQNSKIHKMGVCC 200 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~----i~i~d~~~~~~~~~~~~~~~~~~~v~~ 200 (331)
+.++.+..++.+.+..... +....++.|+..+++.+.+.. .+|. -++|+....+....-...-+....|.+
T Consensus 186 l~L~~~~~~klEvL~yirT-E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRT-ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred EEEEEecCCcEEEEEEEEe-cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 4444444444444444433 233467888865666666643 3343 356777655432211111126888999
Q ss_pred EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------
Q 020107 201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------ 274 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 274 (331)
++++| ++..|+.|+.||.|.+||.... +.. .....-.++.++|+|++ ..+++++..+.+.+||+.-..
T Consensus 265 ca~sp-~E~kLvlGC~DgSiiLyD~~~~---~t~-~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 265 CARSP-SEDKLVLGCEDGSIILYDTTRG---VTL-LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EecCc-ccceEEEEecCCeEEEEEcCCC---eee-eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCccceeec
Confidence 99999 9999999999999999999864 222 23445668899999997 677777777888999875432
Q ss_pred -----cceeEEee---cCCcceeeeeecCCC
Q 020107 275 -----AEVLETYA---KHGSLAYGADWQRGR 297 (331)
Q Consensus 275 -----~~~~~~~~---~h~~~v~~~~~~~~~ 297 (331)
++..-.+. .+...+..+.|.+..
T Consensus 339 sEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 339 SEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred cccCCCccEEeeehhccCcchhheeEeccCC
Confidence 11111122 345567788888543
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=4.7e-06 Score=73.78 Aligned_cols=108 Identities=19% Similarity=0.310 Sum_probs=82.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
...-+.|+|.. .+||++++.. .+.|.|.||--.... .....+..| +++++|+|. .-.|+.|-.
T Consensus 17 vsti~SWHPse---PlfAVA~fS~------er~GSVtIfadtGEP-qr~Vt~P~h---atSLCWHpe----~~vLa~gwe 79 (1416)
T KOG3617|consen 17 VSTISSWHPSE---PLFAVASFSP------ERGGSVTIFADTGEP-QRDVTYPVH---ATSLCWHPE----EFVLAQGWE 79 (1416)
T ss_pred cccccccCCCC---ceeEEEEecC------CCCceEEEEecCCCC-Cccccccee---hhhhccChH----HHHHhhccc
Confidence 44556777777 5999998642 258899998544332 222222333 556999999 778999999
Q ss_pred CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
-|.+ +|...+.+. |+.+|..+.|+++|..++++..-|.|.+|...
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9998 998877554 68889999999999999999999999999876
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=8.1e-08 Score=84.87 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=137.4
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.-.|++|+... +.|++|+ -.|.|++|++.++. .......|..+|+-+.-+.+ +..+++.+.
T Consensus 1103 ~fTc~afs~~~---~hL~vG~----------~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~d----gs~~Ltsss 1163 (1516)
T KOG1832|consen 1103 LFTCIAFSGGT---NHLAVGS----------HAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSVD----GSTQLTSSS 1163 (1516)
T ss_pred ceeeEEeecCC---ceEEeee----------ccceEEEEEccCcc--ccccccccccccccccccCC----cceeeeecc
Confidence 34577777666 8999999 59999999999986 44555789999999998888 777776666
Q ss_pred CccE---EEecCCCc--cc-CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee-ee---cccceeEEEeeCCC
Q 020107 91 DGGL---LRDITGEK--IS-SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ-WK---AHEFELWATSFDVH 160 (331)
Q Consensus 91 dg~i---iw~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~---~~~~~v~~~~~~~~ 160 (331)
-... +|+....- .| -....++.|+.....-+.|+.-....+||+.++.. +.+ +. +....-++..|+|
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP- 1240 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSP- 1240 (1516)
T ss_pred ccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCC-
Confidence 6654 99987622 12 23456788887766667777767889999998753 332 21 2223336888999
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
...+++ .||. +||.|..+.+..|.. ... -..-.|+| .++.++..++ |||+|+. +.+.. ...
T Consensus 1241 ~D~LIl---ndGv--LWDvR~~~aIh~FD~---ft~-~~~G~FHP-~g~eVIINSE-----IwD~RTF-~lLh~---VP~ 1301 (1516)
T KOG1832|consen 1241 CDTLIL---NDGV--LWDVRIPEAIHRFDQ---FTD-YGGGGFHP-SGNEVIINSE-----IWDMRTF-KLLHS---VPS 1301 (1516)
T ss_pred CcceEe---eCce--eeeeccHHHHhhhhh---hee-cccccccC-CCceEEeech-----hhhhHHH-HHHhc---Ccc
Confidence 556655 3564 799998877666655 221 22345899 8988888765 8999986 33332 111
Q ss_pred CceEEEEECCCC
Q 020107 241 GGVWRIKHHPFI 252 (331)
Q Consensus 241 ~~v~~~~~~~~~ 252 (331)
-.-..+.|+..|
T Consensus 1302 Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1302 LDQCAVTFNSTG 1313 (1516)
T ss_pred ccceEEEeccCc
Confidence 123456777664
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=2.1e-06 Score=76.41 Aligned_cols=174 Identities=15% Similarity=0.061 Sum_probs=122.2
Q ss_pred eEEEEcCCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 84 FLAQADADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
.++.|+-...+ ..|+.+.+.+ .+.|.-++ .+++.+++|...|+|.+-|.++.+ .+.++..|.+.+.++.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc--eeeeeeccccceeeee
Confidence 44444444444 5555554432 22344443 367889999999999999998764 5899999999998887
Q ss_pred eCCCCCcEEEEEcC---------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 157 FDVHQPHMVYTGSD---------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 157 ~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
. .+++|++++. |..|+|||+|..+.+..++. +.++ .-+.|+|.-...+++++..|...+-|..+
T Consensus 225 v---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 225 V---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred c---cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 5 4588888874 56789999999887777776 3333 66788996678899999999999999544
Q ss_pred CCCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 228 ISKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 228 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
...|... ........+..+.+++++ ..++.+-.++.+.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 4344222 123445569999999996 5555555566666665
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-05 Score=64.73 Aligned_cols=235 Identities=13% Similarity=0.095 Sum_probs=135.7
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..++|+|+.. -++..++ .+..|+|.|+++.. ....+..+ ..+++++|.-+. ..+|..|..
T Consensus 195 ~IrdlafSp~~~--GLl~~as----------l~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde---~h~IYaGl~ 256 (463)
T KOG1645|consen 195 FIRDLAFSPFNE--GLLGLAS----------LGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDE---RHVIYAGLQ 256 (463)
T ss_pred hhhhhccCcccc--ceeeeec----------cCceEEEEecccce--eeeheecc-CCceeeeeccCC---cceeEEecc
Confidence 466788888873 3777777 79999999999875 44444445 789999999885 668999999
Q ss_pred CccE-EEecCCCccc---------CccEEEEEEcC------CCCeEEEEecCCeEEEEEccc--cceeeeeeeeccccee
Q 020107 91 DGGL-LRDITGEKIS---------SSMCLCLEWNP------SATSITVGLSDGSVSIVSVVE--SQLEVLQQWKAHEFEL 152 (331)
Q Consensus 91 dg~i-iw~~~~~~~~---------~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~v 152 (331)
+|.+ ++|++..+.+ ..+|..++.-+ .+..++.... .+..|++.- +.+.++..+. ..+..
T Consensus 257 nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele-~pG~c 333 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE-PPGIC 333 (463)
T ss_pred CceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC-CCcce
Confidence 9999 9998875442 34455544433 2333333333 234565543 2232333332 34556
Q ss_pred EEEeeCCCCCcEEEEEcCCC------eEEE-EEccCCCceeeeecccCC-Cc---c--eEEEEEecCCCCEE-EEEecCC
Q 020107 153 WATSFDVHQPHMVYTGSDDC------KFSG-WDIRESPFKLAFQNSKIH-KM---G--VCCIASIPSDSNTL-LTGSYDE 218 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg------~i~i-~d~~~~~~~~~~~~~~~~-~~---~--v~~~~~~~~~~~~l-~~~~~d~ 218 (331)
.++..++...+.+++.-.+. .+-+ -|-+.+.. +....+.+ .. + -+...+.+.+.+++ .++...+
T Consensus 334 ismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p--Vc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP--VCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred eeeeecCccceEEEEecCCCCCccceeeeeeeccccCce--eeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 67777764455555543321 1111 11111111 11000001 00 0 01111222133444 4455667
Q ss_pred eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
.+.+||..+. ..+.. .+...+|..++......+-+++.-.++.+++++..
T Consensus 412 ~lil~D~~s~-evvQ~--l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHSF-EVVQT--LALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eeEEeccchh-heeee--cccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 8999999985 44444 56678899988776544667777788888887754
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=0.00012 Score=58.70 Aligned_cols=203 Identities=16% Similarity=0.132 Sum_probs=119.4
Q ss_pred cEEEEEEcCC-CCeEEEEecCC-eEEEEEccccceeeeeeeecccce--eEEEeeCCCCCcEEEEEcC-----CCeEEEE
Q 020107 107 MCLCLEWNPS-ATSITVGLSDG-SVSIVSVVESQLEVLQQWKAHEFE--LWATSFDVHQPHMVYTGSD-----DCKFSGW 177 (331)
Q Consensus 107 ~v~~~~~~~~-~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~-----dg~i~i~ 177 (331)
....++.+|. ...++.+-.-| ...+||..+++. ...+....+. --...|+| ++.+|++.-. .|.|-||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence 3456778884 44466665544 567889988764 2222221111 11347898 7888887643 5899999
Q ss_pred Ecc-CCCceeeeecccCCCcceEEEEEecCCCCEEEEEe------------------cCCeEEEEEecCCCCCceee-e-
Q 020107 178 DIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS------------------YDEYLRVWDVRSISKPVNET-S- 236 (331)
Q Consensus 178 d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~-~- 236 (331)
|.. +.+.+.++.. |.-....+.+.| ++..|+++- ++.++.+.|.+++ ..+.+. +
T Consensus 83 d~~~~~~ri~E~~s---~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp 157 (305)
T PF07433_consen 83 DAARGYRRIGEFPS---HGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELP 157 (305)
T ss_pred ECcCCcEEEeEecC---CCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecC
Confidence 999 4444555555 777778888999 886666652 1223444444443 222221 1
Q ss_pred -eecCCceEEEEECCCCCCeEEEEEecCc-----EEEEEEcCcccceeEEee-------cCCcceeeeeecCCCCccccc
Q 020107 237 -VCLGGGVWRIKHHPFIPGLVLAACMHNG-----FAVVKVGGEKAEVLETYA-------KHGSLAYGADWQRGRSSLEGK 303 (331)
Q Consensus 237 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~ 303 (331)
..|.-.|..+++.++ +.++.+....+ .-++-+... ++.+..+. .-.+.+-++++++++.
T Consensus 158 ~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~----- 229 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGR----- 229 (305)
T ss_pred ccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCC-----
Confidence 235567888999988 55555543322 111222221 22222222 1235678999999983
Q ss_pred ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 304 RKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 304 ~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+.+|+= .-+.+.+||..++.+
T Consensus 230 ---~ia~tsP-rGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 230 ---LIAVTSP-RGGRVAVWDAATGRL 251 (305)
T ss_pred ---EEEEECC-CCCEEEEEECCCCCE
Confidence 3445555 889999999998865
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=2.1e-05 Score=72.34 Aligned_cols=203 Identities=14% Similarity=0.154 Sum_probs=128.1
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEc----cC
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI----RE 181 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~----~~ 181 (331)
..|.++.|..+.+.++.+...|.|.+.|.++...+.+.. -...|.+++|+| ++..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 578899999999999999999999999988765543333 356799999999 8888888887777765433 11
Q ss_pred CCc-------------------eeeeecccC------------------CCcceEEEEEecCCCCEEEEEe----cC-Ce
Q 020107 182 SPF-------------------KLAFQNSKI------------------HKMGVCCIASIPSDSNTLLTGS----YD-EY 219 (331)
Q Consensus 182 ~~~-------------------~~~~~~~~~------------------~~~~v~~~~~~~~~~~~l~~~~----~d-~~ 219 (331)
.+. ...|.+..+ -.+.=++|.|-- +|.++|+.. .+ ..
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence 110 111111000 011224588988 899999843 23 79
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE---ecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecC
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC---MHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~ 295 (331)
|++||-.. . +.....+..+.-.+++|-|.| ..+.+.. +++.|.++.-.... +...-.+......|..++|+.
T Consensus 224 irV~drEg-~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDREG-A--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEecccc-h--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 99999872 1 111123344455689999975 4443332 34444444433321 222222333344599999999
Q ss_pred CCCcccccccCcEEEE---eecCCCeEEEEcCCCc
Q 020107 296 GRSSLEGKRKNSLVAT---CSFYDRLLRIWMPESD 327 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s---~~~~d~~i~iW~~~~~ 327 (331)
++ ..||. .. ....|++|-+.+.
T Consensus 300 ~s---------diLAv~~~~~-e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 300 NS---------DILAVVTSNL-ENSLVQLWTTGNY 324 (1265)
T ss_pred CC---------Cceeeeeccc-ccceEEEEEecCe
Confidence 98 57777 55 5566999988764
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.51 E-value=0.00027 Score=56.05 Aligned_cols=212 Identities=13% Similarity=-0.007 Sum_probs=116.0
Q ss_pred CCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107 90 ADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 90 ~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
.+|..+|...-.......+.. ..+++..+++++.++.|..||..+++..-...+....... ... .+..++.++
T Consensus 11 ~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~---~~~~v~v~~ 83 (238)
T PF13360_consen 11 RTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV---DGGRVYVGT 83 (238)
T ss_dssp TTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE---ETTEEEEEE
T ss_pred CCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee---ccccccccc
Confidence 356666666442211121111 2225677888889999999999888653233332111111 111 335566666
Q ss_pred CCCeEEEEEccCCCceeee-ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc------
Q 020107 170 DDCKFSGWDIRESPFKLAF-QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG------ 242 (331)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------ 242 (331)
.++.|..+|..+++..... .....-........... .+..++.+..++.|..+|+++++ .+... ......
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~-~~w~~-~~~~~~~~~~~~ 160 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGK-LLWKY-PVGEPRGSSPIS 160 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTE-EEEEE-ESSTT-SS--EE
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCc-EEEEe-ecCCCCCCccee
Confidence 7889999999999876663 32100011122223333 46788888889999999999874 33331 112111
Q ss_pred ----e-EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 243 ----V-WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 243 ----v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
+ ..+.+. + +.++++..++.+..+++.. ++.+.... ...+..+ ....+ ..|+.++ .++
T Consensus 161 ~~~~~~~~~~~~-~--~~v~~~~~~g~~~~~d~~t--g~~~w~~~--~~~~~~~-~~~~~---------~~l~~~~-~~~ 222 (238)
T PF13360_consen 161 SFSDINGSPVIS-D--GRVYVSSGDGRVVAVDLAT--GEKLWSKP--ISGIYSL-PSVDG---------GTLYVTS-SDG 222 (238)
T ss_dssp EETTEEEEEECC-T--TEEEEECCTSSEEEEETTT--TEEEEEEC--SS-ECEC-EECCC---------TEEEEEE-TTT
T ss_pred eecccccceEEE-C--CEEEEEcCCCeEEEEECCC--CCEEEEec--CCCccCC-ceeeC---------CEEEEEe-CCC
Confidence 1 222323 3 4666666666532334443 44443222 2223332 23444 4788787 899
Q ss_pred eEEEEcCCCccc
Q 020107 318 LLRIWMPESDCL 329 (331)
Q Consensus 318 ~i~iW~~~~~~~ 329 (331)
.|..||+.++..
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999999864
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=7.2e-05 Score=65.14 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=101.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEe-EeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELL-YRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+...|++-.......+++.|+ ..|.+++|+-..+. +... ..+-.+.+..+..+++ ..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~Gs----------S~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~----e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGS----------SAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSV----EYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEec----------ccceEEEEecCchh--hhcccccCccceEEEEEecch----hHhhhhhc
Confidence 344455555555568999998 89999999998875 2222 2233455667778888 78899999
Q ss_pred CCccE-EEecCCC------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEE
Q 020107 90 ADGGL-LRDITGE------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWA 154 (331)
Q Consensus 90 ~dg~i-iw~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~ 154 (331)
..|.+ ++.+... +.|+..|++++|++++..+++|...|.|..-.+..... -....+..-...|-.
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 99998 4444432 22678999999999999999999999999988876210 112222334556777
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
+... +..+|++...- ..+++.+.++
T Consensus 176 lD~~--q~~LLVStl~r--~~Lc~tE~et 200 (726)
T KOG3621|consen 176 LDYL--QSYLLVSTLTR--CILCQTEAET 200 (726)
T ss_pred eecc--cceehHhhhhh--hheeecchhH
Confidence 7765 33444443322 3355655443
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.47 E-value=0.00039 Score=55.76 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=140.3
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCCccE--EEecCCCccc------Ccc-EE-EEEEcCCCCeEEEEec-----CCeEEEEE
Q 020107 69 IFDIKWSPVGGNAGPFLAQADADGGL--LRDITGEKIS------SSM-CL-CLEWNPSATSITVGLS-----DGSVSIVS 133 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~~------~~~-v~-~~~~~~~~~~l~~~~~-----dg~i~i~d 133 (331)
...++.+|.. ...++.+-.-|.. ++|..+++.. ... .+ .-.|+++|++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~---~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTR---PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCC---CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3456677743 5677777777777 7777766542 011 11 3469999999988743 68999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------------------CCCeEEEEEccCCCceeeeecc-cCC
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------------------DDCKFSGWDIRESPFKLAFQNS-KIH 194 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~-~~~ 194 (331)
.. .....+.++..+.-.-..+.+.| ++..|+.+. .+-.+...|.++++.+...... ..|
T Consensus 84 ~~-~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 84 AA-RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred Cc-CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 98 34456778887777777888998 665555542 2345666777888766654441 227
Q ss_pred CcceEEEEEecCCCCEEEEEecCCe-------EEEEEecCCCCCcee---eeeecCCceEEEEECCCCCCeEEEEEec-C
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEY-------LRVWDVRSISKPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMH-N 263 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~ 263 (331)
+-.|+.+++.+ ++..++..-..|. |-+++....-+.+.. ......+.+-+|++++++ ..+++++-- +
T Consensus 162 ~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCC
Confidence 77899999998 7766555443332 333333221000000 012345678999999996 556565544 4
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
.+.+|+... ++.+....- ..+.+++-.+++ +++|.+ .|.+..
T Consensus 240 ~~~~~d~~t--g~~~~~~~l--~D~cGva~~~~~----------f~~ssG--~G~~~~ 281 (305)
T PF07433_consen 240 RVAVWDAAT--GRLLGSVPL--PDACGVAPTDDG----------FLVSSG--QGQLIR 281 (305)
T ss_pred EEEEEECCC--CCEeecccc--CceeeeeecCCc----------eEEeCC--CccEEE
Confidence 445554444 555554432 235566666654 788877 455433
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.2e-05 Score=66.17 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=132.6
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccC-cccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNA-EEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGE 101 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~ 101 (331)
+++.+++ -||.++.|.-.. ....+...+..|...|.+++.+.+ +.++.+.+. |..+ ++++...
T Consensus 21 ~fiiqAS----------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d----g~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 21 KFIIQAS----------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD----GWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred heEEeee----------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc----ceeEeeccCcccceeEEEeecc
Confidence 6888888 699999998766 222344445668888999999999 888898777 8888 7777654
Q ss_pred ccc-----CccEEEEEEcC-CC---CeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC
Q 020107 102 KIS-----SSMCLCLEWNP-SA---TSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD 171 (331)
Q Consensus 102 ~~~-----~~~v~~~~~~~-~~---~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (331)
... ....-.+.|.. .| ..++++. .+|.+.++|-.....+....-.-|..+|..+.+++ .++.+++....
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeecccc
Confidence 431 01111222322 22 1344443 48999999987654444444456899999999997 78889999999
Q ss_pred CeEEEEEccC----CCc--eee------eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 172 CKFSGWDIRE----SPF--KLA------FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 172 g~i~i~d~~~----~~~--~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
|.|.-|.... ++. ... +...+.......++.|+| ++..+.+-+.|..|++++.++++
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 9999999873 111 000 111122456688999999 99999999999999999998863
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=0.00015 Score=62.29 Aligned_cols=181 Identities=13% Similarity=-0.000 Sum_probs=99.7
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeeccc--c---eeEEEeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHE--F---ELWATSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNS 191 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 191 (331)
..++.++.+|.+..+|..+++..-...+.... . ....+.-+|. .+..++.++.+|.+..+|..+++.......
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~- 284 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY- 284 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence 45777888999999999887542111111000 0 0111111220 234566677899999999999875443322
Q ss_pred cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
. ....+.. .+..++.++.++.+..+|..+++..... ..... ...+.... + +.+++...++.+..++.
T Consensus 285 ---~-~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~~~~~~sp~v~-~--g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 285 ---G-SVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQ--SDLLHRLLTAPVLY-N--GYLVVGDSEGYLHWINR 352 (394)
T ss_pred ---C-CccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcc--cccCCCcccCCEEE-C--CEEEEEeCCCEEEEEEC
Confidence 1 1112222 4567778888999999999886432221 11111 11111221 2 66777777777666555
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.+ ++.+...+-....+.+--...+ ..|+.++ .||.|+.+++
T Consensus 353 ~t--G~~~~~~~~~~~~~~s~P~~~~----------~~l~v~t-~~G~l~~~~~ 393 (394)
T PRK11138 353 ED--GRFVAQQKVDSSGFLSEPVVAD----------DKLLIQA-RDGTVYAITR 393 (394)
T ss_pred CC--CCEEEEEEcCCCcceeCCEEEC----------CEEEEEe-CCceEEEEeC
Confidence 44 6777666543333332111123 3666677 8999998765
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=7.1e-06 Score=71.13 Aligned_cols=150 Identities=12% Similarity=0.057 Sum_probs=104.9
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
...+.--+++..+++++.|+.-|.+++|+-..+... .....+....+..+..++ ...++++|+..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 344545556778899999999999999998876542 222333455566777787 778999999999999999887443
Q ss_pred eeeee---cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC---CCCceeeeeecCCceEEEEECCCCCCeEEE
Q 020107 185 KLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI---SKPVNETSVCLGGGVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 185 ~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 258 (331)
..... .-+.|...|++++|++ ++..+++|..-|+|.+-.+... ..+... .....+.|-.+..... .++++
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~-il~~ds~IVQlD~~q~--~LLVS 186 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE-ILSEDSEIVQLDYLQS--YLLVS 186 (726)
T ss_pred CcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce-eeccCcceEEeecccc--eehHh
Confidence 22221 1233778999999999 9999999999999998887761 111122 3455677888877654 44444
Q ss_pred EE
Q 020107 259 AC 260 (331)
Q Consensus 259 ~~ 260 (331)
+.
T Consensus 187 tl 188 (726)
T KOG3621|consen 187 TL 188 (726)
T ss_pred hh
Confidence 43
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00011 Score=65.56 Aligned_cols=201 Identities=9% Similarity=-0.025 Sum_probs=125.7
Q ss_pred EEcCCCCCCCCeEEEEcCCccE-EEec-----CCCcccCcc-EEEEEEcCCCCeEEEEecCC-----eEEEEEcccc---
Q 020107 73 KWSPVGGNAGPFLAQADADGGL-LRDI-----TGEKISSSM-CLCLEWNPSATSITVGLSDG-----SVSIVSVVES--- 137 (331)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~dg~i-iw~~-----~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--- 137 (331)
+|++. +..++.|+.+|.+ +.+- ...+..... +..+....+.++|++.+.|+ .|++|+++.-
T Consensus 30 c~~s~----~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSS----TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCC----CceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 35676 7799999999999 3222 222222233 44443333446777777654 4899999762
Q ss_pred c-eeeee--eeec-----ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc--CCCc-eeeeecccCCCcceEEEEEecC
Q 020107 138 Q-LEVLQ--QWKA-----HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR--ESPF-KLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 138 ~-~~~~~--~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~-~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
. +.++. .+.. ...++.+++.+. +-+.++.|-.+|.|..+.-. ..+- ...+. .....+|+.+.+..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRS- 181 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEec-
Confidence 2 22331 1112 356788899986 67889999999999888532 1111 11122 12478899999987
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCC
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHG 285 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 285 (331)
++..++-...-..|.+|.+.. +.|.......|+.++.|..+++.. +.+++++ ...+.+|+.... ....++. +|.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~--~~cfaf~~g~k 256 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR--GPCFAFEVGEK 256 (933)
T ss_pred CCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc--ceeeeecCCCe
Confidence 666533333446799999985 346666567888999999999875 4455554 455566665543 4445555 555
Q ss_pred c
Q 020107 286 S 286 (331)
Q Consensus 286 ~ 286 (331)
.
T Consensus 257 k 257 (933)
T KOG2114|consen 257 K 257 (933)
T ss_pred E
Confidence 4
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.41 E-value=0.00068 Score=57.24 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=139.5
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee----------------cCcEeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD----------------TAGIFDIK 73 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~----------------~~~v~~~~ 73 (331)
.......|+|.+ +.+|... ++.|++.+..++. ..+....+. -+.-.++-
T Consensus 43 ~~~~~~~~sP~g---~~~~~v~-----------~~nly~~~~~~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~ 107 (353)
T PF00930_consen 43 PKLQDAKWSPDG---KYIAFVR-----------DNNLYLRDLATGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVW 107 (353)
T ss_dssp TTBSEEEE-SSS---TEEEEEE-----------TTEEEEESSTTSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEE
T ss_pred cccccceeecCC---CeeEEEe-----------cCceEEEECCCCC-eEEeccccceeEEcCccceeccccccccccceE
Confidence 456778888886 8999996 8999999887664 232222220 11236788
Q ss_pred EcCCCCCCCCeEEEEcCCccE--EEecCCCccc---CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee---
Q 020107 74 WSPVGGNAGPFLAQADADGGL--LRDITGEKIS---SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW--- 145 (331)
Q Consensus 74 ~~~~~~~~~~~l~~~~~dg~i--iw~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--- 145 (331)
|||+ +++||....|-.- .+.+...... ...+..+.+-.-|.... .-.+.++|+.+++...+...
T Consensus 108 WSpd----~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 108 WSPD----SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp E-TT----SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHH
T ss_pred ECCC----CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeecccc
Confidence 9999 8888887665443 2221111111 12344454432222211 12466788887764322222
Q ss_pred ecccceeEEEeeCCCCCc-EEEE-EcCC---CeEEEEEccCCCceeeeecccCCCcce---EEEEEe-cCCCCEEEEEec
Q 020107 146 KAHEFELWATSFDVHQPH-MVYT-GSDD---CKFSGWDIRESPFKLAFQNSKIHKMGV---CCIASI-PSDSNTLLTGSY 216 (331)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~-~l~~-~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~~~~~ 216 (331)
......+..+.|.+ ++. +++. ..++ ..+.+.|..++......... ....| ....+. +....++.....
T Consensus 180 ~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~ 256 (353)
T PF00930_consen 180 NPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET--SDGWVDVYDPPHFLGPDGNEFLWISER 256 (353)
T ss_dssp HTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEET
T ss_pred CCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec--CCcceeeecccccccCCCCEEEEEEEc
Confidence 23466789999998 555 3332 3333 35677888877654444331 22222 244444 535556666667
Q ss_pred CCeEEEEEecCCCCCceeeeeecCCceEE-EEECCCCCCeEEEEEec--CcEEEEEEcCcccceeEEeecCCcceeeeee
Q 020107 217 DEYLRVWDVRSISKPVNETSVCLGGGVWR-IKHHPFIPGLVLAACMH--NGFAVVKVGGEKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 217 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 293 (331)
||.-+||-+......... +....-.|.. +.|+++++.+++.+..+ ....+|.+.-..+..+..+......-..+.|
T Consensus 257 ~G~~hly~~~~~~~~~~~-lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~ 335 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPRQ-LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF 335 (353)
T ss_dssp TSSEEEEEEETTSSEEEE-SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE
T ss_pred CCCcEEEEEcccccceec-cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE
Confidence 887666666553333222 3444555644 77888874444455432 2445666655423455556544443378999
Q ss_pred cCCCC
Q 020107 294 QRGRS 298 (331)
Q Consensus 294 ~~~~~ 298 (331)
||++.
T Consensus 336 Spdg~ 340 (353)
T PF00930_consen 336 SPDGK 340 (353)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 99985
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.32 E-value=0.00076 Score=57.26 Aligned_cols=241 Identities=12% Similarity=0.038 Sum_probs=123.0
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcccC----ccEEEEEEcCCCCeEEEEecCCeEEEEEccc------
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISS----SMCLCLEWNPSATSITVGLSDGSVSIVSVVE------ 136 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------ 136 (331)
.|+.+.|.++ ..-|+++...|.+ +|.....+... ..-..+.+.+ + ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~----t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPE----TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETT----TTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCC----CceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc----c--cccCCCcceEEehhhCCccc
Confidence 5889999999 7789999999999 76665543321 1111112211 0 11122223444443
Q ss_pred -cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-----CCCcceEEEEEec----C
Q 020107 137 -SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-----IHKMGVCCIASIP----S 206 (331)
Q Consensus 137 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~ 206 (331)
..+.+...+....++|++++.+ +-.+++.|..+|.+.|.|+|.+..+..-.... .....|+++.|.. .
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ccccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1245555666678899999987 55789999999999999999876554432211 1345688888872 1
Q ss_pred C---CCEEEEEecCCeEEEEEecC-CCCCce----eeeeecCCceEEEE-ECCCC-------------------CCeEEE
Q 020107 207 D---SNTLLTGSYDEYLRVWDVRS-ISKPVN----ETSVCLGGGVWRIK-HHPFI-------------------PGLVLA 258 (331)
Q Consensus 207 ~---~~~l~~~~~d~~i~iwd~~~-~~~~~~----~~~~~~~~~v~~~~-~~~~~-------------------~~~~~~ 258 (331)
+ .-.+++|...|.+.+|.+.- ...... .....+.++|..+. ++.+. -.-+++
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 2 25789999999999998862 111111 10113556666554 32111 012455
Q ss_pred EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+++..++++..... +.........-....+.+-+... ...+..|+.-- .+|.|+++.+..-
T Consensus 231 vvSe~~irv~~~~~~--k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~-~~G~i~i~SLP~L 292 (395)
T PF08596_consen 231 VVSESDIRVFKPPKS--KGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLF-NNGSIRIYSLPSL 292 (395)
T ss_dssp EE-SSEEEEE-TT-----EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEE-TTSEEEEEETTT-
T ss_pred EEcccceEEEeCCCC--cccceeeccccccceEEEEeecc----cCCceEEEEEE-CCCcEEEEECCCc
Confidence 566788889888774 32222222223334444532000 00115677776 8999999998763
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.30 E-value=0.00061 Score=58.65 Aligned_cols=222 Identities=9% Similarity=-0.000 Sum_probs=115.2
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCC-CcccCccEEEEEEcCCCCeEEEEecCCeEEEE-Eccccceeeee
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITG-EKISSSMCLCLEWNPSATSITVGLSDGSVSIV-SVVESQLEVLQ 143 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~ 143 (331)
.-....+.++|+ ++.+++++...-.++.... .....+......|.+. +.+|+-...+.|.++ +.+... ..
T Consensus 32 ~~~p~~ls~npn----gr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~---~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPN----GRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV---VK 103 (443)
T ss_dssp SS--SEEEE-TT----SSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T---T-
T ss_pred CcCCeeEEECCC----CCEEEEEcCCEEEEEEccCCcccccCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc---ce
Confidence 344789999999 8888885544434665322 2233455667889984 457777778899996 333221 22
Q ss_pred eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE
Q 020107 144 QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223 (331)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 223 (331)
.++. ...+..+-. +.+|...+ ++.|.+||..+++.+..+.. . +|..+.|++ ++.+++..+.+ .+.++
T Consensus 104 ~i~~-~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v----~-~vk~V~Ws~-~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDV----S-AVKYVIWSD-DGELVALVTKD-SIYIL 170 (443)
T ss_dssp -----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS------E-EEEEE-T-TSSEEEEE-S--SEEEE
T ss_pred EEcC-CcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEec----C-CCcEEEEEC-CCCEEEEEeCC-eEEEE
Confidence 3322 112344432 56666665 44899999999987777764 2 489999999 89999888765 57777
Q ss_pred EecCC---------CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 224 DVRSI---------SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 224 d~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
+.... -.............|.+.+|..+ -++.++ .+.++. +.......+..+ ..+++=+...
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT--~~~lkY--l~~Ge~~~i~~l---d~~~yllgy~ 241 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT--SNHLKY--LVNGETGIIAHL---DKPLYLLGYL 241 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE---TTEEEE--EETTEEEEEEE----SS--EEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc--CCeEEE--EEcCCcceEEEc---CCceEEEEEE
Confidence 65431 01122222344678999999986 333333 235544 333212333333 4567777777
Q ss_pred CCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+.. +.+.... .|+.|..+.++..
T Consensus 242 ~~~---------~~ly~~D-r~~~v~~~~ld~~ 264 (443)
T PF04053_consen 242 PKE---------NRLYLID-RDGNVISYELDLS 264 (443)
T ss_dssp TTT---------TEEEEE--TT--EEEEE--HH
T ss_pred ccC---------CEEEEEE-CCCCEEEEEECHH
Confidence 755 4777777 7888888876543
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=9.2e-07 Score=78.48 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=130.1
Q ss_pred ecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CC-eE
Q 020107 97 DITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DC-KF 174 (331)
Q Consensus 97 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-~i 174 (331)
++....-+....+|++|+.+.+.|++|+..|.|++|++.+|.. .....+|..+|+-+.-+. ++..+++.+. .. ..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccC-CcceeeeeccccCchH
Confidence 3444444678889999999999999999999999999999865 667889999999999886 5665555443 33 46
Q ss_pred EEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---cCCceEEEEECC
Q 020107 175 SGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---LGGGVWRIKHHP 250 (331)
Q Consensus 175 ~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~ 250 (331)
.+|++..- .....+ ..-.++.|+. ....-+.|.......+||+.+. .++..++.+ ....-+...|+|
T Consensus 1170 aLW~~~s~~~~~Hsf-------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhccccccCccccc-------cccceeehhh-hHHHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCC
Confidence 78998752 112222 2346788887 4444455655677999999996 444332222 122336788999
Q ss_pred CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+. .++- .++- +|+++.. +.+..|...+..+ .-.|+|.+ .-++.-+ .|||+.+-.
T Consensus 1241 ~D--~LIl--ndGv--LWDvR~~--~aIh~FD~ft~~~-~G~FHP~g---------~eVIINS------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1241 CD--TLIL--NDGV--LWDVRIP--EAIHRFDQFTDYG-GGGFHPSG---------NEVIINS------EIWDMRTFK 1294 (1516)
T ss_pred Cc--ceEe--eCce--eeeeccH--HHHhhhhhheecc-cccccCCC---------ceEEeec------hhhhhHHHH
Confidence 84 3433 2343 8999874 5555555433221 33588887 5677666 578876643
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.23 E-value=0.0021 Score=55.22 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=113.2
Q ss_pred CeEEEEcCCccE-EEecCCCccc-----CccEEE-EEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE-E
Q 020107 83 PFLAQADADGGL-LRDITGEKIS-----SSMCLC-LEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW-A 154 (331)
Q Consensus 83 ~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~-~ 154 (331)
..++.++.+|.+ -+|..+++.. ...+.+ ... .+..++++..+|.+..+|.++++. +-.......... .
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~~ 196 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV--KWTVNLDVPSLTLR 196 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE--eeeecCCCCccccc
Confidence 356667777776 4444433320 111111 011 245677788899999999998865 322221110000 0
Q ss_pred EeeCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCC-Cc---ceEEEEEecC-CCCEEEEEecCCeEEEEEecCC
Q 020107 155 TSFDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH-KM---GVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 155 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
..-+|. ....++.++.+|.+..+|..+++........... .. ....+..+|. .+..++.++.++.+..+|..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 001110 1235667778999999999988765443321100 00 0111111120 2456777778999999999987
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCc
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~ 307 (331)
+..... .... ...+... + +.+++...++.+..++..+ ++.+-....-.. ...+.... + .
T Consensus 277 ~~~W~~---~~~~-~~~~~~~--~-~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~sp~v~-~----------g 336 (394)
T PRK11138 277 QIVWKR---EYGS-VNDFAVD--G-GRIYLVDQNDRVYALDTRG--GVELWSQSDLLHRLLTAPVLY-N----------G 336 (394)
T ss_pred CEEEee---cCCC-ccCcEEE--C-CEEEEEcCCCeEEEEECCC--CcEEEcccccCCCcccCCEEE-C----------C
Confidence 433222 1111 1122222 2 5566666777766666543 444332221111 11111121 2 3
Q ss_pred EEEEeecCCCeEEEEcCCCccc
Q 020107 308 LVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.|+.++ .||.|+..|.+++..
T Consensus 337 ~l~v~~-~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 337 YLVVGD-SEGYLHWINREDGRF 357 (394)
T ss_pred EEEEEe-CCCEEEEEECCCCCE
Confidence 677777 899999999888754
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.0017 Score=51.29 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=108.5
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+..++|.|... .++|+.. ..+.|.-++.+.. .++.+.-.-.+..-.|++..+ +.++++--
T Consensus 22 ~e~SGLTy~pd~~--tLfaV~d----------~~~~i~els~~G~--vlr~i~l~g~~D~EgI~y~g~----~~~vl~~E 83 (248)
T PF06977_consen 22 DELSGLTYNPDTG--TLFAVQD----------EPGEIYELSLDGK--VLRRIPLDGFGDYEGITYLGN----GRYVLSEE 83 (248)
T ss_dssp S-EEEEEEETTTT--EEEEEET----------TTTEEEEEETT----EEEEEE-SS-SSEEEEEE-ST----TEEEEEET
T ss_pred CCccccEEcCCCC--eEEEEEC----------CCCEEEEEcCCCC--EEEEEeCCCCCCceeEEEECC----CEEEEEEc
Confidence 3578899999763 4666654 6777776665432 344442222355788888877 66666665
Q ss_pred CCccE-EEecCC-----------------CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc--ccee-eeeee---
Q 020107 90 ADGGL-LRDITG-----------------EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE--SQLE-VLQQW--- 145 (331)
Q Consensus 90 ~dg~i-iw~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~-~~~~~--- 145 (331)
.++.+ +.++.. ...++..+-.++|++.++.|+++-+..-..+|.+.. .... .....
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence 67777 444311 111345678999999999888888877777777764 1110 01111
Q ss_pred ---ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC------CcceEEEEEecCCCCEEEEEec
Q 020107 146 ---KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH------KMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 146 ---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
......+.+++++|..+++++....+..|..+| .+++....+....+. -...-.|+|.+ +|++.+++ +
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-E 240 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-E 240 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-T
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-C
Confidence 112345789999998889999999999999999 557666666552211 12467899998 77555544 5
Q ss_pred CCeEEE
Q 020107 217 DEYLRV 222 (331)
Q Consensus 217 d~~i~i 222 (331)
-+...+
T Consensus 241 pNlfy~ 246 (248)
T PF06977_consen 241 PNLFYR 246 (248)
T ss_dssp TTEEEE
T ss_pred CceEEE
Confidence 554443
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.0022 Score=54.51 Aligned_cols=238 Identities=16% Similarity=0.210 Sum_probs=125.7
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc----------------------------------
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---------------------------------- 56 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---------------------------------- 56 (331)
.+..|.+++.. --||+|. ..|.|.||.....+.
T Consensus 3 ~v~~vs~a~~t---~Elav~~----------~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~ 69 (395)
T PF08596_consen 3 SVTHVSFAPET---LELAVGL----------ESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP 69 (395)
T ss_dssp -EEEEEEETTT---TEEEEEE----------TTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--
T ss_pred eEEEEEecCCC---ceEEEEc----------cCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC
Confidence 46778888887 6788887 789999887643210
Q ss_pred -------ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc--------------cCccEEEEEEc
Q 020107 57 -------NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI--------------SSSMCLCLEWN 114 (331)
Q Consensus 57 -------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~ 114 (331)
....+.....++|++++.|.- -++|.|..+|.+ +-|++.... ....++++.|.
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~i-----GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSDI-----GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-BT-----SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred cccccccCchhheeccCCcEeEEecCCC-----cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 011122334678999999755 499999999999 777765332 24567788886
Q ss_pred C-----CC---CeEEEEecCCeEEEEEccc---cce--eeeeeeecccceeEEEe-eCCCC-------------------
Q 020107 115 P-----SA---TSITVGLSDGSVSIVSVVE---SQL--EVLQQWKAHEFELWATS-FDVHQ------------------- 161 (331)
Q Consensus 115 ~-----~~---~~l~~~~~dg~i~i~d~~~---~~~--~~~~~~~~~~~~v~~~~-~~~~~------------------- 161 (331)
. |+ -.+++|...|.+.+|.+.- +.+ +.......+..+|..+. ++.+.
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2 22 3689999999999998752 222 11112223445555444 32111
Q ss_pred -CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec----CCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 162 -PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP----SDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 162 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+.++++++ +..++++...+.+....... .......+.+-+ ..+..|++-..+|.|++|.+... +++....
T Consensus 225 i~g~vVvvS-e~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~ 299 (395)
T PF08596_consen 225 IPGYVVVVS-ESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVS 299 (395)
T ss_dssp --EEEEEE--SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE
T ss_pred cCcEEEEEc-ccceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhccc
Confidence 12444444 78899999887664332222 222333344421 14667888889999999999886 3343311
Q ss_pred ee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 237 VC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 237 ~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.. ....+....++++| . ++.-.+...+.++.++..
T Consensus 300 l~~~~d~~~~~~ssis~~G-d-i~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 300 LPPPLDSRRLSSSSISRNG-D-IFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp -SS---HHHHTT-EE-TTS---EEEE-SSSEEEEEEEES-
T ss_pred CCCccccccccccEECCCC-C-EEEEeCcccEEEEEEEcc
Confidence 11 11234556778885 3 444445556667777664
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=1.5e-05 Score=70.83 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=83.6
Q ss_pred EEEcCCCCeEEEEec----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 111 LEWNPSATSITVGLS----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
.+|+|..+++++++. .|+|.||- ++|++..-.++ .-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence 468888888887764 68888885 34543222222 33467899999 76788888899999999988766443
Q ss_pred eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.... |..+|.-+.|+| +|..++++..-|.+.+|.+...
T Consensus 96 v~~t---h~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 96 VVET---HPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eccC---CCCCceeEEecC-CCCeEEEcCCCceeEEEEeeec
Confidence 3333 999999999999 9999999999999999988743
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.13 E-value=0.00022 Score=64.90 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=91.8
Q ss_pred ecCCeEEEEEccccceeeeeeeecccce-eEEEeeCC----CCCcEEEEEcCCCeEEEEEccCCCceeee-ec-ccCCCc
Q 020107 124 LSDGSVSIVSVVESQLEVLQQWKAHEFE-LWATSFDV----HQPHMVYTGSDDCKFSGWDIRESPFKLAF-QN-SKIHKM 196 (331)
Q Consensus 124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~~~ 196 (331)
.....|+-.|++.|+. +..++.+... |..++-.. -.+...+.|-.+..|..||.|-....... .. .-....
T Consensus 501 ~~~~~ly~mDLe~GKV--V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKV--VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcE--EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3467899999999976 7788776643 55554321 12345667778899999999965421111 11 001344
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
...|++-.. ..+||+|+.+|.||+||-- +.+ ..+.+.+.+.+|..|..+.+| ..++++| ...+.+++.
T Consensus 579 ~Fs~~aTt~--~G~iavgs~~G~IRLyd~~-g~~-AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTE--DGYIAVGSNKGDIRLYDRL-GKR-AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecC--CceEEEEeCCCcEEeeccc-chh-hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEE
Confidence 567777664 4589999999999999943 333 444456778999999999997 5555555 445555554
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.0012 Score=58.23 Aligned_cols=246 Identities=11% Similarity=0.043 Sum_probs=142.7
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEc--CCCCCCCCeEEEEcCCccEEEecC
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWS--PVGGNAGPFLAQADADGGLLRDIT 99 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~~~dg~iiw~~~ 99 (331)
-+|++|.+-. ..+..|-..+++..+ .-+.+.-.....+..++|. |. ..+++.++..
T Consensus 139 ydGr~~find---------k~n~Rvari~l~~~~-~~~i~~iPn~~~~Hg~~~~~~p~----t~yv~~~~e~-------- 196 (635)
T PRK02888 139 YDGRYLFIND---------KANTRVARIRLDVMK-CDKITELPNVQGIHGLRPQKIPR----TGYVFCNGEF-------- 196 (635)
T ss_pred cceeEEEEec---------CCCcceEEEECccEe-eceeEeCCCccCccccCccccCC----ccEEEeCccc--------
Confidence 3456666654 145666666666554 2222223344567777775 55 6677766653
Q ss_pred CCcccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC----CeE
Q 020107 100 GEKISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD----CKF 174 (331)
Q Consensus 100 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i 174 (331)
.+-+.|+|+.+...+. .+.+.+.|.++.+. ...+.- ......++++| ++.++++.+.+ ..+
T Consensus 197 ----------~~PlpnDGk~l~~~~ey~~~vSvID~etmeV--~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 197 ----------RIPLPNDGKDLDDPKKYRSLFTAVDAETMEV--AWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred ----------ccccCCCCCEeecccceeEEEEEEECccceE--EEEEEe-CCCcccceECC-CCCEEEEeccCcccCcce
Confidence 3345667776544433 67788888886543 333332 22446778888 66666666421 233
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC----CCCCceeeeeecCCceEEEEECC
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS----ISKPVNETSVCLGGGVWRIKHHP 250 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~ 250 (331)
..-+.........+.. ..+. .+.+ ++++...+ ++.|.+.|.++ ....+.. ..-......+.++|
T Consensus 263 ~em~a~e~d~~vvfni-----~~ie--a~vk-dGK~~~V~--gn~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSP 330 (635)
T PRK02888 263 AEMMAAERDWVVVFNI-----ARIE--EAVK-AGKFKTIG--GSKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSP 330 (635)
T ss_pred eeeccccCceEEEEch-----HHHH--Hhhh-CCCEEEEC--CCEEEEEECCccccCCcceEEE--EECCCCccceEECC
Confidence 3333322221111111 0010 2234 56666553 67899999987 2233333 67788899999999
Q ss_pred CCCCeEEEEEecCcEEEEEEcCccc----------ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEKA----------EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
|+...+++...++.+.++++..... ..+.+..- ...-...+|.+++ ....|.- -|.+|.
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G---------~aytslf-~dsqv~ 399 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG---------NAYTTLF-LDSQIV 399 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC---------CEEEeEe-ecceeE
Confidence 9966666666788889999877421 11222221 1223356777776 5677776 899999
Q ss_pred EEcCCC
Q 020107 321 IWMPES 326 (331)
Q Consensus 321 iW~~~~ 326 (331)
.|++++
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999876
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0036 Score=51.09 Aligned_cols=263 Identities=12% Similarity=0.014 Sum_probs=146.3
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC------CccE-----EEecCCCcc------cC
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA------DGGL-----LRDITGEKI------SS 105 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i-----iw~~~~~~~------~~ 105 (331)
.++++++|.++++ .+-.+..+.. -.+..+|+ ++.+++++. -|.. +||..+... +.
T Consensus 16 ~~rv~viD~d~~k-~lGmi~~g~~---~~~~~spd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 16 TSRVYVIDADSGK-LLGMIDTGFL---GNVALSPD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp SEEEEEEETTTTE-EEEEEEEESS---EEEEE-TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred cceEEEEECCCCc-EEEEeecccC---CceeECCC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 3579999988765 3444433333 33567899 888877642 2222 899887643 11
Q ss_pred c-cE------EEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 106 S-MC------LCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 106 ~-~v------~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
. .. ..++++.+++++++... --+|.|.|+..++. +.++.. .+ |...-|..+.-+.+-+.||.+.-
T Consensus 88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv--v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV--VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE--EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEE
T ss_pred cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce--eeeecC-CC---EEEEEecCCCceEEEecCCceEE
Confidence 1 11 23567778887666543 66788888887765 455442 11 22222334456778888999999
Q ss_pred EEccC-CCceeee-ecccCCCcce-EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec----------CCce
Q 020107 177 WDIRE-SPFKLAF-QNSKIHKMGV-CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL----------GGGV 243 (331)
Q Consensus 177 ~d~~~-~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~v 243 (331)
..+.. ++..... ..+..-..++ ..-.+.. .+..++--+.+|.|+-.|+.............. .+.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 98884 4332111 1111112222 2223344 455566678899999999886432111101100 1223
Q ss_pred EEEEECCCCCCeEEEEEe--------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 244 WRIKHHPFIPGLVLAACM--------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
.-+++++.. +.+.+.-. +.+-.+|-+...+.+.+.++.- ...+.++..+.+.. .+|.+.+..
T Consensus 241 Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~ 310 (342)
T PF06433_consen 241 QLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAG 310 (342)
T ss_dssp S-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETT
T ss_pred eeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCC
Confidence 346777654 33333221 2245677777766777877763 34677999998875 466544315
Q ss_pred CCeEEEEcCCCcccC
Q 020107 316 DRLLRIWMPESDCLT 330 (331)
Q Consensus 316 d~~i~iW~~~~~~~~ 330 (331)
++.|.+||..++.+.
T Consensus 311 ~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEETTT--EE
T ss_pred CCeEEEEeCcCCcEE
Confidence 899999999998653
No 338
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.0033 Score=49.82 Aligned_cols=211 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCC
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPS 116 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~ 116 (331)
+|.|..||..+++...+.-.........+. ..++ +..+++++.++.+ .++..+++.. ...+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE----TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe----CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence 678889998776532222211101111111 1222 3456666666666 5555444320 00000001 124
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeee-eeccc---ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQ-WKAHE---FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 192 (331)
+..+++++.++.++.+|..+++. +-. ..... .......... .++.++.+..++.|..+|+++++.+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcce--eeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 56677778888999999988865 333 12111 1111122221 25677888889999999999998766665511
Q ss_pred CCC-cc------e-EEEEEecCCCCEEEEEecCCe-EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 193 IHK-MG------V-CCIASIPSDSNTLLTGSYDEY-LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 193 ~~~-~~------v-~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
... .. + ..+.+. ++ .++.++.++. +.+ |+.+++.. .+ .. ...+..+. .+.+ +.+++.+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~-w~--~~-~~~~~~~~-~~~~-~~l~~~~~~~ 222 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKL-WS--KP-ISGIYSLP-SVDG-GTLYVTSSDG 222 (238)
T ss_dssp T-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEE-EE--EC-SS-ECECE-ECCC-TEEEEEETTT
T ss_pred CCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEE-EE--ec-CCCccCCc-eeeC-CEEEEEeCCC
Confidence 111 11 1 223332 34 6666777775 555 99986422 22 23 33333322 2333 5666666778
Q ss_pred cEEEEEEcC
Q 020107 264 GFAVVKVGG 272 (331)
Q Consensus 264 ~~~~~~~~~ 272 (331)
.+..+++..
T Consensus 223 ~l~~~d~~t 231 (238)
T PF13360_consen 223 RLYALDLKT 231 (238)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 877777665
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.1e-05 Score=65.77 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=76.7
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE-EEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC-CIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
...+.-+.|+| .-.++|.+..+|.|.+..+. .+.+..+.. |...++ +++|.| +|+.||+|-.||+|++.|..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecC-CCCEEEEEecCCeEEEEEccC
Confidence 34577899999 88999999999999999888 444555654 566666 999999 999999999999999999998
Q ss_pred CCCCceeeeeecCCceEEEEECCC
Q 020107 228 ISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
+.. +..........|.++.|.+.
T Consensus 94 ~~~-l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 94 GGR-LVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred CCc-eeccccccccchheeecccc
Confidence 643 33324455678888888753
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.007 Score=50.46 Aligned_cols=212 Identities=14% Similarity=0.105 Sum_probs=113.9
Q ss_pred CcceeEeeecCCCC----CcEEEEEeecccCCCCCCCCCcEEEEeccCcc---cceEEeE-eeecCcEeEEEEcCCCCCC
Q 020107 10 GNADAVEFCPQDSY----HHVLAASTYTLQEGDKPSRNGSISLFNVNAEE---KNLELLY-RMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 10 ~~~~~v~~~~~~~~----~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~ 81 (331)
.++.++.......+ ..+|++|+.-...+......|.|.++++.... ..++.+. ....++|++++-.
T Consensus 24 E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~------ 97 (321)
T PF03178_consen 24 EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF------ 97 (321)
T ss_dssp EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE------
T ss_pred ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh------
Confidence 35666666654432 47999998433333222233999999988841 1122221 1123334444322
Q ss_pred CCeEEEEcCCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCCC
Q 020107 82 GPFLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
+ ..|+++. .+.|.+|++...+ +.....+.. ...+.++...
T Consensus 98 ----------------------------------~-~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~-- 138 (321)
T PF03178_consen 98 ----------------------------------N-GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVF-- 138 (321)
T ss_dssp ----------------------------------T-TEEEEEE-TTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEE--
T ss_pred ----------------------------------C-CEEEEee-cCEEEEEEccCcccchhhheecc-eEEEEEEecc--
Confidence 2 2233332 3678888888776 544444433 2356666654
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC------CC-Cc
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI------SK-PV 232 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~-~~ 232 (331)
+++++.|.....+.++..+.... ...+.. ......++++.+-+ +++.++.+..+|.+.++..... .. .+
T Consensus 139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred -ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 36888998888888875554221 222222 22456689999986 5579999999999999988631 11 12
Q ss_pred ee-eeeecCCceEEE---EECC--CCCC-----eEEEEEecCcEEEEE
Q 020107 233 NE-TSVCLGGGVWRI---KHHP--FIPG-----LVLAACMHNGFAVVK 269 (331)
Q Consensus 233 ~~-~~~~~~~~v~~~---~~~~--~~~~-----~~~~~~~~~~~~~~~ 269 (331)
.. .....+..|+++ .+.| .+.. .++.++.+|++..+-
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 22 123445667777 5555 2222 377777888876443
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.01 Score=51.36 Aligned_cols=214 Identities=7% Similarity=0.028 Sum_probs=107.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
+..+..+.++|.+ +++++++ +|.-.|+..... +.. ..+.-....|.+. + .+|+-
T Consensus 32 ~~~p~~ls~npng---r~v~V~g-----------~geY~iyt~~~~----r~k---~~G~g~~~vw~~~----n-~yAv~ 85 (443)
T PF04053_consen 32 EIYPQSLSHNPNG---RFVLVCG-----------DGEYEIYTALAW----RNK---AFGSGLSFVWSSR----N-RYAVL 85 (443)
T ss_dssp SS--SEEEE-TTS---SEEEEEE-----------TTEEEEEETTTT----EEE---EEEE-SEEEE-TS----S-EEEEE
T ss_pred CcCCeeEEECCCC---CEEEEEc-----------CCEEEEEEccCC----ccc---ccCceeEEEEecC----c-cEEEE
Confidence 4457788888877 8888876 999999984332 222 1234566789886 4 46777
Q ss_pred cCCccE-E-EecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-L-RDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-i-w~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
..+..+ + .+...... .+..+..+-. |..|...+. +.|.+||..+++. +..+... +|..+.|++ ++
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~--i~~i~v~--~vk~V~Ws~-~g 156 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKL--IRRIDVS--AVKYVIWSD-DG 156 (443)
T ss_dssp -TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--E--EEEESS---E-EEEEE-T-TS
T ss_pred ECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhhHcce--eeEEecC--CCcEEEEEC-CC
Confidence 667777 5 45543331 1222333322 777777655 4899999998865 6666532 489999998 77
Q ss_pred cEEEEEcCCCeEEEEEccCC-----------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 163 HMVYTGSDDCKFSGWDIRES-----------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
.+++..+.+ .+.+++.... .....+.. -...|.+..|.. + .++-.... .|+. +..+...
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~-d--~fiYtT~~-~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVE-D--CFIYTTSN-HLKY--LVNGETG 226 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEET-T--EEEEE-TT-EEEE--EETTEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEc-C--EEEEEcCC-eEEE--EEcCCcc
Confidence 888877744 6667665432 01112211 256788888875 3 33333333 6665 4443221
Q ss_pred ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
.. .....+++=+...|.. +.+...-.+..+..+.+.
T Consensus 227 ~i---~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 II---AHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE---EE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred eE---EEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence 11 2334556666666643 444454455555555443
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.90 E-value=0.019 Score=52.88 Aligned_cols=156 Identities=8% Similarity=0.042 Sum_probs=98.1
Q ss_pred eEEEeeCCCCCcEEEEEc----------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107 152 LWATSFDVHQPHMVYTGS----------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 221 (331)
+.++.|..+.+.+++.|. ..|.|.++.......+..... ..-++.+.++..- +++++|.- ...|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e-~~v~Gav~aL~~f--ngkllA~I--n~~vr 851 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE-TVVKGAVYALVEF--NGKLLAGI--NQSVR 851 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee-eeeccceeehhhh--CCeEEEec--CcEEE
Confidence 444557753356666665 358888888877333333322 1124555555443 57666654 57899
Q ss_pred EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCCCcc
Q 020107 222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSL 300 (331)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 300 (331)
+|++...+....+ ..+..++..+...-.+ ..++++-.-..+.+......++.....-+ .+....+++.+-.+.
T Consensus 852 Lye~t~~~eLr~e--~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d--- 925 (1096)
T KOG1897|consen 852 LYEWTTERELRIE--CNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD--- 925 (1096)
T ss_pred EEEccccceehhh--hcccCCeEEEEEEecC-cEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc---
Confidence 9999885333333 6777788888777766 56667666677777777766555555444 467788888888775
Q ss_pred cccccCcEEEEeecCCCeEEEEcCCC
Q 020107 301 EGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 301 ~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.++-+- .+|.+.+-..++
T Consensus 926 -------~ylgae-~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 926 -------TYLGAE-NSGNLFTVRKDS 943 (1096)
T ss_pred -------eEEeec-ccccEEEEEecC
Confidence 344444 678887766554
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=9e-05 Score=63.78 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=76.2
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE-EEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW-ATSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
...+.-+.|+|.-..+|.+..+|.|.+..+.- +.+-++.-+...++ +++|.| +++.++.|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence 45577889999999999999999999988873 33566665666666 999999 79999999999999999999987
Q ss_pred ceeeeecccCCCcceEEEEEec
Q 020107 184 FKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
.+..+.. .-...|.++.|.|
T Consensus 96 ~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred ceecccc--ccccchheeeccc
Confidence 6665322 1367788888875
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.88 E-value=0.011 Score=49.31 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=108.3
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEE---eeCCC---CCcEEEEEcC----------CCeEEEEEccCC----Ccee
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWAT---SFDVH---QPHMVYTGSD----------DCKFSGWDIRES----PFKL 186 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~---~~~~l~~~~~----------dg~i~i~d~~~~----~~~~ 186 (331)
..|++.|..+.+......+... ..++++ .+... ...+++.|+. .|.|.++++... ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3678888876654333444433 334443 33321 1467777652 289999999984 1222
Q ss_pred eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.+.. ....++|++++-- ++. |+.+. ++.|.+|++...+.....-.......+.++.... .+++++....++.
T Consensus 81 ~i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 81 LIHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVS 152 (321)
T ss_dssp EEEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEE
T ss_pred EEEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc---cEEEEEEcccCEE
Confidence 2222 2257889998876 344 44443 5889999999854233332233444677777664 5788888889988
Q ss_pred EEEEcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 267 VVKVGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++.+.....+....-+ .....++++.+-+++ ..++.+. .+|.|.++..+.
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~---------~~~i~~D-~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDE---------DTIIVGD-KDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SS---------SEEEEEE-TTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCC---------cEEEEEc-CCCeEEEEEECC
Confidence 8877764222322222 235578899998776 4788888 899999998764
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.0085 Score=47.35 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=105.7
Q ss_pred ccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 106 SMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 106 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
..+..++|+|+.+ ++++....+.|..++.+ ++......+.+ ......+++.. ++.++++--+++.+.++++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 4588999999766 45666668888888865 55422222333 34577888874 666777666789999999843221
Q ss_pred ---e---eeee--cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC--CCCCcee-ee------eecCCceEEEE
Q 020107 185 ---K---LAFQ--NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS--ISKPVNE-TS------VCLGGGVWRIK 247 (331)
Q Consensus 185 ---~---~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~-~~------~~~~~~v~~~~ 247 (331)
. ..+. ....+...+-.++|+| ..+.|+.+-+..-..+|.++. ....+.. .. ......+..++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1 1222 1123566799999999 666666677777777887765 1111111 00 11234578899
Q ss_pred ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC---------cceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 248 HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG---------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
++|....+++.+..... ++.+... ++.+..+.-.. ..--+++|.++| .|...+ +-+.
T Consensus 178 ~~p~t~~lliLS~es~~--l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G----------~LYIvs-EpNl 243 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRL--LLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG----------NLYIVS-EPNL 243 (248)
T ss_dssp EETTTTEEEEEETTTTE--EEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT------------EEEEE-TTTE
T ss_pred EcCCCCeEEEEECCCCe--EEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCC----------CEEEEc-CCce
Confidence 99987455555444444 4444433 66555544111 246689999987 344445 6666
Q ss_pred EEEE
Q 020107 319 LRIW 322 (331)
Q Consensus 319 i~iW 322 (331)
.+++
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0047 Score=53.09 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=114.8
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEc---CC-ccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEe-cCCe--EEEE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQAD---AD-GGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGL-SDGS--VSIV 132 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~---~d-g~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~ 132 (331)
...+..-+|+|+ +..++-.. .. ..+ ++++.+++.. ...-..-+|+|||+.|+... .||. |.++
T Consensus 192 ~~~~~~p~ws~~----~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 192 GSLILTPAWSPD----GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred CcceeccccCcC----CCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 345777789998 55544332 11 224 7777776542 23334567999999866554 4665 5555
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
|+..+.. ..+....+.-+.=.|+|++..++++.+..|. |.++|...... ..+.. ....-..-.|+| ++++
T Consensus 268 dl~~~~~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~---~~~~~~~p~~Sp-dG~~ 339 (425)
T COG0823 268 DLDGKNL---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF---SGGGNSNPVWSP-DGDK 339 (425)
T ss_pred cCCCCcc---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec---cCCCCcCccCCC-CCCE
Confidence 6665542 2233333333466899954455555556665 55556665543 33333 222222778899 8888
Q ss_pred EEEEecC-Ce--EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107 211 LLTGSYD-EY--LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL 287 (331)
Q Consensus 211 l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 287 (331)
++..+.. |. |.+.|+.+... .. ..........-.|.|++..++..++..++-.++.+... ++....+....+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~-~~--~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~-g~~~~~~~~~~~~ 415 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGK-IR--ILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD-GRVSRPLPLADGD 415 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCc-EE--EccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc-ceeEEEEeccCcc
Confidence 8877743 44 66666655432 22 23444445566778887444444444433334444333 3333333333334
Q ss_pred eeeeeecC
Q 020107 288 AYGADWQR 295 (331)
Q Consensus 288 v~~~~~~~ 295 (331)
+..-+|+|
T Consensus 416 ~~~p~w~~ 423 (425)
T COG0823 416 VRVPAWSP 423 (425)
T ss_pred eecccccC
Confidence 44444443
No 347
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.84 E-value=0.013 Score=49.43 Aligned_cols=199 Identities=9% Similarity=0.032 Sum_probs=92.8
Q ss_pred CCCeEEEEe-cCCeEEEEEcccc--ceeeeeeeec---cc----ceeEEEeeCCCCCcEEEEEc------CCCeEEEEEc
Q 020107 116 SATSITVGL-SDGSVSIVSVVES--QLEVLQQWKA---HE----FELWATSFDVHQPHMVYTGS------DDCKFSGWDI 179 (331)
Q Consensus 116 ~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~~---~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~ 179 (331)
+.++|++.+ ..+.|.|+|+.+. +....+.+.. +. .....+..-| ++.+++++- .-|.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 445666665 6889999999852 2222333332 11 1222333334 666777642 2357888888
Q ss_pred cCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--------------------cCCeEEEEEecCCCCCceeeeeec
Q 020107 180 RESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--------------------YDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
.+.+....+.........-+.+-|.| ..+.++|.. ...++.+||+.+. ++++.+..+.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~idLg~ 242 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQTIDLGE 242 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEEEES-T
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeEEecCC
Confidence 87766666655222344567788888 778888753 2468999999984 5565533333
Q ss_pred CC-ceEEEEECCC--CCCeEEEEEecCcEEEEEEcCcc-----cceeEEeecC-----------------Ccceeeeeec
Q 020107 240 GG-GVWRIKHHPF--IPGLVLAACMHNGFAVVKVGGEK-----AEVLETYAKH-----------------GSLAYGADWQ 294 (331)
Q Consensus 240 ~~-~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h-----------------~~~v~~~~~~ 294 (331)
.+ .+..|+|..+ ...-++.+.-... +|.+.... .+.+..+..- ..-|+++..|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~--i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSS--IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EE--EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCceEEEEecCCCCccceEEEEeccce--EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 33 4667777654 3223333333333 55554421 2233333211 2458999999
Q ss_pred CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.|+ ++|....+.+|.|+.||+.+-.
T Consensus 321 lDD---------rfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 321 LDD---------RFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TTS----------EEEEEETTTTEEEEEE-SSTT
T ss_pred cCC---------CEEEEEcccCCcEEEEecCCCC
Confidence 998 7887777799999999998743
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=8.8e-05 Score=39.37 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=33.2
Q ss_pred ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
+....+..|...|.++.|.+.. .++++++ .|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG---------KYLASAS-DDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC---------CEEEEec-CCCeEEEcC
Confidence 4566777889999999999987 6899999 999999996
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=0.0098 Score=46.18 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred eecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-E
Q 020107 17 FCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-L 95 (331)
Q Consensus 17 ~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-i 95 (331)
.+++.. .++..|+ -.+.+.--|..+++...+.+.. ..|.+-+.- - +++++.|...|.+ +
T Consensus 18 V~~dsk--T~v~igS----------Hs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-v----gdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 18 VCNDSK--TLVVIGS----------HSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-V----GDFVVLGCYSGGLYF 77 (354)
T ss_pred EecCCc--eEEEEec----------CCceEEEecCCCCcEEeehhhC---ceeeeeeEE-E----CCEEEEEEccCcEEE
Confidence 344443 7888898 5888888888887633333322 223222222 2 5689999999988 4
Q ss_pred EecCCCccc-----CccE-EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107 96 RDITGEKIS-----SSMC-LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 96 w~~~~~~~~-----~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
-+..++..- ...| ......+++..+..|+.|+..+..|.++... +...+.......+-+..| ....|..+.
T Consensus 78 l~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c--VykskcgG~~f~sP~i~~-g~~sly~a~ 154 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAP-GDGSLYAAI 154 (354)
T ss_pred EEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce--EEecccCCceeccceecC-CCceEEEEe
Confidence 444443210 0111 1223467899999999999999999987643 555554343334445555 334444445
Q ss_pred CCCeEEEEEccCC
Q 020107 170 DDCKFSGWDIRES 182 (331)
Q Consensus 170 ~dg~i~i~d~~~~ 182 (331)
..|.+.--.....
T Consensus 155 t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 155 TAGAVLAVTKNPY 167 (354)
T ss_pred ccceEEEEccCCC
Confidence 5565554444433
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0032 Score=42.23 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred ceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 12 ADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 12 ~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
+.++.++.+..++ +.|++|+ .|..|++|+-+.. +..+ .....|+.+.-... ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs----------~D~~IRvf~~~e~---~~Ei--~e~~~v~~L~~~~~-----~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS----------DDFEIRVFKGDEI---VAEI--TETDKVTSLCSLGG-----GRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEec----------CCcEEEEEeCCcE---EEEE--ecccceEEEEEcCC-----CEEEEEec
Confidence 5678888876554 5788888 8999999986653 3333 23466888776665 37999999
Q ss_pred CccE--------EEecCCCcccCccEEEEEEcC---CC-CeEEEEecCCeEE
Q 020107 91 DGGL--------LRDITGEKISSSMCLCLEWNP---SA-TSITVGLSDGSVS 130 (331)
Q Consensus 91 dg~i--------iw~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~ 130 (331)
+|++ +|.+.+.. .+.++.+.. +| +.|++|-.+|.|-
T Consensus 62 NGTVGvY~~~~RlWRiKSK~----~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 62 NGTVGVYDRSQRLWRIKSKN----QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCEEEEEeCcceeeeeccCC----CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999 77776543 345554432 33 2588888888764
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.004 Score=41.80 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=65.9
Q ss_pred eEEEeeCC---CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 152 LWATSFDV---HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 152 v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
|+++++.. +..+.|++|+.|..||+|+-. ..+..+.. ...|+++.-.. +..|+.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e----~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE----TDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec----ccceEEEEEcC--CCEEEEEecCCEEEEEeCcc-
Confidence 44555443 244789999999999999865 34566664 67788888775 47799999999999997643
Q ss_pred CCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCc
Q 020107 229 SKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNG 264 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~ 264 (331)
+... ......+.++.+.. ++...++++-+++.
T Consensus 73 -RlWR---iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 73 -RLWR---IKSKNQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred -eeee---eccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 3332 23334466665543 33235666655554
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.67 E-value=0.027 Score=47.67 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=123.6
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----------------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS----------------- 104 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~----------------- 104 (331)
.+.+.+||+.++. ...+... ...+....|||+ ++.++-.... .+ +++..+....
T Consensus 22 ~~~y~i~d~~~~~--~~~l~~~-~~~~~~~~~sP~----g~~~~~v~~~-nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGE--ITPLTPP-PPKLQDAKWSPD----GKYIAFVRDN-NLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTE--EEESS-E-ETTBSEEEE-SS----STEEEEEETT-EEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCc--eEECcCC-ccccccceeecC----CCeeEEEecC-ceEEEECCCCCeEEeccccceeEEcCccce
Confidence 5689999999875 4444332 567899999999 8888877654 45 6655433210
Q ss_pred ------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeeccc---ceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 105 ------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHE---FELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 105 ------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
-..-..+-|+||+++|+.... +..|..+.+.. +.... ..+..+.+- .-+.--. .-.+
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~--------~~~~~~~yp~~~~~~YP-k~G~~np----~v~l 160 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD--------YSPPDSQYPEVESIRYP-KAGDPNP----RVSL 160 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE--------ESSSTESS-EEEEEE---BTTS-------EEEE
T ss_pred eccccccccccceEECCCCCEEEEEEECCcCCceEEeec--------cCCccccCCcccccccC-CCCCcCC----ceEE
Confidence 112256889999998877644 44444444322 11111 133444432 1111111 1246
Q ss_pred EEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEe--cCC---eEEEEEecCCCCCceeeeeecCCce---
Q 020107 175 SGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGS--YDE---YLRVWDVRSISKPVNETSVCLGGGV--- 243 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~--~d~---~i~iwd~~~~~~~~~~~~~~~~~~v--- 243 (331)
.|+|+.+++.. .+... ......+..+.|.+ ++..|+..- .+. .+.++|..++...... .....+.|
T Consensus 161 ~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~~~ 237 (353)
T PF00930_consen 161 FVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVDVY 237 (353)
T ss_dssp EEEESSSTCCC-EE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSSSS
T ss_pred EEEECCCCcEE-EeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-EecCCcceeee
Confidence 77899877643 22211 12466789999999 777344332 222 4667788764332222 23333333
Q ss_pred EEEEEC-CCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee-eeecCCCC
Q 020107 244 WRIKHH-PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG-ADWQRGRS 298 (331)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~ 298 (331)
....|. +++..++..+-.++--+++.+... +.....+....-.|.. +.|.+++.
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~-~~~~~~lT~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLD-GGKPRQLTSGDWEVTSILGWDEDNN 293 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETT-SSEEEESS-SSS-EEEEEEEECTSS
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccc-ccceeccccCceeecccceEcCCCC
Confidence 245554 777566666666666677777665 3334455544555644 66777763
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.0061 Score=53.96 Aligned_cols=165 Identities=9% Similarity=0.031 Sum_probs=102.1
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE---EEecCCCcccCccEEEEEE------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL---LRDITGEKISSSMCLCLEW------ 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i---iw~~~~~~~~~~~v~~~~~------ 113 (331)
.+.+.+.|.++.+ ....+.- .+....++++|+ ++++++.+.+... +-.+...... ..+.|
T Consensus 214 ~~~vSvID~etme-V~~qV~V--dgnpd~v~~spd----Gk~afvTsyNsE~G~tl~em~a~e~d----~~vvfni~~ie 282 (635)
T PRK02888 214 RSLFTAVDAETME-VAWQVMV--DGNLDNVDTDYD----GKYAFSTCYNSEEGVTLAEMMAAERD----WVVVFNIARIE 282 (635)
T ss_pred eEEEEEEECccce-EEEEEEe--CCCcccceECCC----CCEEEEeccCcccCcceeeeccccCc----eEEEEchHHHH
Confidence 5566666666543 2222211 224466788888 8888887644333 3333332211 22333
Q ss_pred --cCCCCeEEEEecCCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc---
Q 020107 114 --NPSATSITVGLSDGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--- 184 (331)
Q Consensus 114 --~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 184 (331)
.++|++... .++.|.+.|..+ +. ..+..+. -......+.++|+....++++..+.++.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 283 EAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 346777665 357899999887 22 2244443 3456789999994444455555789999999987542
Q ss_pred ---------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 185 ---------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 185 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
..... -.......+|.+ +++...+..-|..|..||+..
T Consensus 359 ~~~~~~~~vvaeve----vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE----LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec----cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 11222 133456778888 888888888999999999875
No 354
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.005 Score=52.93 Aligned_cols=164 Identities=10% Similarity=-0.049 Sum_probs=97.0
Q ss_pred eecccceeEEEeeCCCCCcEEEEE---cCC-CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE-EEecCCe
Q 020107 145 WKAHEFELWATSFDVHQPHMVYTG---SDD-CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL-TGSYDEY 219 (331)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~l~~~---~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~ 219 (331)
+......+..-+|+| ++..++.. ... ..+.++|+.+++....... ...-..-+|+| +++.|+ +...||.
T Consensus 188 l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fsp-DG~~l~f~~~rdg~ 261 (425)
T COG0823 188 LTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSP-DGSKLAFSSSRDGS 261 (425)
T ss_pred ecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCC-CCCEEEEEECCCCC
Confidence 333445677778888 44443322 222 4699999999886665553 34445578999 666554 4556675
Q ss_pred --EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 220 --LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 220 --i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
|.+.|+.... ... +....+.-..=.|+|+|+.++.++...+.-.+|.+..+ +.....+......-..-.|+|++
T Consensus 262 ~~iy~~dl~~~~--~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGKN--LPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQVTRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCCc--cee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCceeEeeccCCCCcCccCCCCC
Confidence 5555666532 222 22333333466899999777777766666677777665 33334444333333367899999
Q ss_pred CcccccccCcEEEEeecCCCe--EEEEcCCCc
Q 020107 298 SSLEGKRKNSLVATCSFYDRL--LRIWMPESD 327 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~--i~iW~~~~~ 327 (331)
++|+..+..+|. |.+.++.++
T Consensus 338 ---------~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 338 ---------DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ---------CEEEEEeccCCceeeEEeccCCC
Confidence 566666523455 666665444
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00018 Score=38.09 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=28.0
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd 224 (331)
|...|.++.|.+ .+.++++++.|+.+++||
T Consensus 11 ~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 888999999999 778999999999999996
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.038 Score=47.67 Aligned_cols=186 Identities=14% Similarity=0.088 Sum_probs=100.1
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-------ccCccEE-----EE
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-------ISSSMCL-----CL 111 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-------~~~~~v~-----~~ 111 (331)
.|+||+..... +..+ ....+.|.++.|+.+ . .|++-..||.+ ++++.... .....|. ..
T Consensus 62 ~I~iys~sG~l--l~~i-~w~~~~iv~~~wt~~----e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSI-PWDSGRIVGMGWTDD----E-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred EEEEECCCCCE--eEEE-EECCCCEEEEEECCC----C-eEEEEEcCCEEEEEeCCCceeechhhhccccCccccccccc
Confidence 59999888764 4444 223378999999887 3 56666789998 88775433 1112222 22
Q ss_pred EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE----------EeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA----------TSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
.+..+| +++-..++.+.+..-..... ..+.+..-...... ..++. +....+....++.+.+.+-..
T Consensus 134 ~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 134 WFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEccc
Confidence 222233 44444455554443222110 01111000000000 11222 223333334445555343322
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
.+. +. ..+++..|+.|| +++++|.-..+|.+.+.+..- .+.+.+....-......+.|+.+
T Consensus 210 ~~~---i~----~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 210 FKQ---ID----SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ccc---cc----CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECC
Confidence 111 11 246899999999 999999999999999987654 34555533344467788999876
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.036 Score=45.07 Aligned_cols=216 Identities=14% Similarity=0.043 Sum_probs=119.7
Q ss_pred CCeEEEEcCCccEEEecCCC-c----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee------------
Q 020107 82 GPFLAQADADGGLLRDITGE-K----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ------------ 144 (331)
Q Consensus 82 ~~~l~~~~~dg~iiw~~~~~-~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------ 144 (331)
++.|+.|..+|..++++... . .+...|..+...++-+.+++-+ |+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~ 85 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT 85 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccc
Confidence 67899999999557776221 1 1344588898888777766654 4999999988632211100
Q ss_pred eecccceeEEEe-eCCCCCcEEEEEcCCCeEEEEEccCC-----CceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107 145 WKAHEFELWATS-FDVHQPHMVYTGSDDCKFSGWDIRES-----PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE 218 (331)
Q Consensus 145 ~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 218 (331)
.......+...+ -....+...+.......|.+|..... +....+.. ...+.+++|.+ +.++.|..++
T Consensus 86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l----p~~~~~i~~~~---~~i~v~~~~~ 158 (275)
T PF00780_consen 86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL----PDPPSSIAFLG---NKICVGTSKG 158 (275)
T ss_pred cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc----CCCcEEEEEeC---CEEEEEeCCc
Confidence 011223344444 11223333444444568999888763 23344443 57889999974 6777776544
Q ss_pred eEEEEEecCCCCCceeeee-e-----------cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--EeecC
Q 020107 219 YLRVWDVRSISKPVNETSV-C-----------LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--TYAKH 284 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h 284 (331)
..+.|+.++ .+... .. . ...++..+....+ .++++. ++.-..++... +..+ .+. -
T Consensus 159 -f~~idl~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~Ll~~--~~~g~fv~~~G---~~~r~~~i~-W 227 (275)
T PF00780_consen 159 -FYLIDLNTG-SPSEL-LDPSDSSSSFKSRNSSSKPLGIFQLSDN--EFLLCY--DNIGVFVNKNG---EPSRKSTIQ-W 227 (275)
T ss_pred -eEEEecCCC-CceEE-eCccCCcchhhhcccCCCceEEEEeCCc--eEEEEe--cceEEEEcCCC---CcCcccEEE-c
Confidence 778898864 22111 11 1 1123334444433 455442 33322333332 2222 222 2
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.....++++... +|+..+ ++.|.||++.++.+
T Consensus 228 ~~~p~~~~~~~p-----------yli~~~--~~~iEV~~~~~~~l 259 (275)
T PF00780_consen 228 SSAPQSVAYSSP-----------YLIAFS--SNSIEVRSLETGEL 259 (275)
T ss_pred CCchhEEEEECC-----------EEEEEC--CCEEEEEECcCCcE
Confidence 335556666442 677776 56699999999864
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.038 Score=47.70 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=34.7
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
.|.+|+.... . +..+.-..+.+.++.|+. + ..|+....||.+++||+..
T Consensus 62 ~I~iys~sG~-l--l~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGK-L--LSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCC-E--eEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence 5888987643 2 333333337899999985 4 4566667899999999973
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0093 Score=55.26 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=112.1
Q ss_pred CCeEEEEcCCccE-----EEecC---CCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeE
Q 020107 82 GPFLAQADADGGL-----LRDIT---GEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 82 ~~~l~~~~~dg~i-----iw~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
+..++.|+..|.+ .|++. .++....+|.+++|+.+|..++.|-.+|.|.+||...++. ++.+..|..+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCccc
Confidence 4478899999988 44443 2333578999999999999999999999999999998754 555555554444
Q ss_pred EE---eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE
Q 020107 154 AT---SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD 224 (331)
Q Consensus 154 ~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd 224 (331)
.+ .+.. ++..++++...|. +|.+.-.+....+. ...+..+.|.++.--| +. .+..-+.+. ..+.-
T Consensus 177 ~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~nk~~L~~~~~kskcl~sg~~g~Vis~s~i~-~e-~l~~~~v~h-f~~v~ 250 (1206)
T KOG2079|consen 177 GVIFVGRTS-QNSKLLTSDTGGS--FWKLVFNKALLNMNTDKSKCLLSGKNGEVISASPIS-DE-NLGSLLVSH-FGFVS 250 (1206)
T ss_pred eEEEEEEeC-CCcEEEEccCCCc--eEEEEechhhhcccchHHHHhhcCCCCceEecccCC-cc-hhhhhheee-eeEEE
Confidence 43 3333 4456888877776 55543222100000 0011345565554444 21 111111111 00111
Q ss_pred ecCCC-----CCceeeeeecCCceEEEE-----ECC----CCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcc
Q 020107 225 VRSIS-----KPVNETSVCLGGGVWRIK-----HHP----FIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSL 287 (331)
Q Consensus 225 ~~~~~-----~~~~~~~~~~~~~v~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~ 287 (331)
+.... .|+.......++.+..++ ++. -.....++++..+++.+..+...++....... .-.+.
T Consensus 251 L~p~~sIvt~fPi~f~~q~pPa~v~~~~~~s~~ins~~ts~e~~~~ia~s~nNkL~v~sI~~sn~~~ql~~~~~~efa~S 330 (1206)
T KOG2079|consen 251 LVPLSSIVTLFPIKFMYQKPPAGVVGSGSHSKLINSDSTSVEEDVVIAASYNNKLVVKSIPNSNFYAQLQPRREGEFAGS 330 (1206)
T ss_pred eecccceeeecceEEEEecCCCceeccccceeeeeccccccccceEEEEEeCCeEEEEEEecccceEEEeeccccccccc
Confidence 11100 111111111122221111 111 11256788888899999988776433322222 23567
Q ss_pred eeeeeecCCC
Q 020107 288 AYGADWQRGR 297 (331)
Q Consensus 288 v~~~~~~~~~ 297 (331)
+..+.|-+..
T Consensus 331 ilsi~W~~s~ 340 (1206)
T KOG2079|consen 331 ILSIHWRRST 340 (1206)
T ss_pred hhheeeeccc
Confidence 8889998874
No 360
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.38 E-value=0.054 Score=44.24 Aligned_cols=268 Identities=13% Similarity=0.091 Sum_probs=124.5
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-e---cCcEeEEEEcCCCCC
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-D---TAGIFDIKWSPVGGN 80 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~ 80 (331)
++..+.+...|.|.... .-+|+|. .+.| +....+.+........ . .....+|.|...
T Consensus 12 ~l~t~~~l~dV~F~d~~---~G~~VG~-----------~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--- 72 (302)
T PF14870_consen 12 SLPTDKPLLDVAFVDPN---HGWAVGA-----------YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--- 72 (302)
T ss_dssp E-S-SS-EEEEEESSSS----EEEEET-----------TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT---
T ss_pred ecCCCCceEEEEEecCC---EEEEEec-----------CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC---
Confidence 34456678889998443 6788886 5543 3433332222222111 1 123667777644
Q ss_pred CCCeEEEEcCCccEEEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc--cceeeeeeeeccc
Q 020107 81 AGPFLAQADADGGLLRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE--SQLEVLQQWKAHE 149 (331)
Q Consensus 81 ~~~~l~~~~~dg~iiw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~ 149 (331)
..++ ++..|.++.....++ .-+.....+....++..++ ++..|.| |.... ..++. ......
T Consensus 73 --~g~i-vG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~~--~~~~~~ 144 (302)
T PF14870_consen 73 --EGWI-VGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQA--VVSETS 144 (302)
T ss_dssp --EEEE-EEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEEE--EE-S--
T ss_pred --ceEE-EcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCeeE--cccCCc
Confidence 2344 445566533222211 1122233333333333333 3444554 33333 23322 223344
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC--
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS-- 227 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-- 227 (331)
..+..+.-++ ++.+++++.......-||.-...-.+.-.. ....|.+|.|.| ++.+.+++ ..|.|++=+...
T Consensus 145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---SSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC---ccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 6688888886 888888887666667788654322222222 467899999999 77665544 888888876221
Q ss_pred --CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccc
Q 020107 228 --ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 228 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~ 302 (331)
..+++.. .....-.+..++|.++ ..+.+++..+. ++.-.+. ++.-+..+ .-...++.+.|.+..
T Consensus 219 ~~w~~~~~~-~~~~~~~~ld~a~~~~--~~~wa~gg~G~--l~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~----- 287 (302)
T PF14870_consen 219 ETWSEPIIP-IKTNGYGILDLAYRPP--NEIWAVGGSGT--LLVSTDG-GKTWQKDRVGENVPSNLYRIVFVNPD----- 287 (302)
T ss_dssp EEE---B-T-TSS--S-EEEEEESSS--S-EEEEESTT---EEEESST-TSS-EE-GGGTTSSS---EEEEEETT-----
T ss_pred cccccccCC-cccCceeeEEEEecCC--CCEEEEeCCcc--EEEeCCC-CccceECccccCCCCceEEEEEcCCC-----
Confidence 1111111 0122334889999988 55556666665 4544443 44444443 234578899998765
Q ss_pred cccCcEEEEeecCCCeEEEE
Q 020107 303 KRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW 322 (331)
+-++-| .+|.|--|
T Consensus 288 ----~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 288 ----KGFVLG--QDGVLLRY 301 (302)
T ss_dssp ----EEEEE---STTEEEEE
T ss_pred ----ceEEEC--CCcEEEEe
Confidence 455555 58988766
No 361
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.34 E-value=0.076 Score=44.98 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=95.8
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEee---ec----CcEeEEEEcCCCCCCCCeEEEE--cCCc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRM---DT----AGIFDIKWSPVGGNAGPFLAQA--DADG 92 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~---~~----~~v~~~~~~~~~~~~~~~l~~~--~~dg 92 (331)
.++|++.+ ...+.|+|+|+.+.... +.++... +. ..-..+.--|+ +.+++++ +.+|
T Consensus 87 Rr~Li~Pg---------L~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~----G~imIS~lGd~~G 153 (461)
T PF05694_consen 87 RRYLILPG---------LRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD----GRIMISALGDADG 153 (461)
T ss_dssp S-EEEEEB---------TTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS------EEEEEEEETTS
T ss_pred CCcEEeee---------eccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC----ccEEEEeccCCCC
Confidence 46777776 36899999999865432 2222221 11 11233344556 6677664 3333
Q ss_pred cE-----EEecCCCcc---------cCccEEEEEEcCCCCeEEEEe--------------------cCCeEEEEEccccc
Q 020107 93 GL-----LRDITGEKI---------SSSMCLCLEWNPSATSITVGL--------------------SDGSVSIVSVVESQ 138 (331)
Q Consensus 93 ~i-----iw~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~ 138 (331)
.- +.|-++.+. ....-+.+-|.|..+.+++.. ...++.+||+.+.+
T Consensus 154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 22 333332211 123345677778777777653 24689999999886
Q ss_pred eeeeeeeec--ccceeEEEeeC--CCCCcEEEEEcCCCeEEEEEc-cCCCc--eeeeeccc----------------CCC
Q 020107 139 LEVLQQWKA--HEFELWATSFD--VHQPHMVYTGSDDCKFSGWDI-RESPF--KLAFQNSK----------------IHK 195 (331)
Q Consensus 139 ~~~~~~~~~--~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~-~~~~~--~~~~~~~~----------------~~~ 195 (331)
. ++++.- .......+.|. |....-++.+.-...|..|-- ..++- ..++.... .-.
T Consensus 234 ~--~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 234 L--LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp E--EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred E--eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 5 444442 22345566665 423334444445555555543 33221 11222100 012
Q ss_pred cceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeee-----------------cCCceEEEEECCCCCCeEE
Q 020107 196 MGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVC-----------------LGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~ 257 (331)
.-|+.|.++. |.++|.... .+|.|+.||+.....|...-... ..+...-+..|-|++.+++
T Consensus 312 ~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 312 PLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -----EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 4478999999 777766655 78999999999876665441111 1223466888888855555
Q ss_pred EEE
Q 020107 258 AAC 260 (331)
Q Consensus 258 ~~~ 260 (331)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 543
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.00043 Score=52.31 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=85.8
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
..+...+.+|.|+-++++..+.. .+..+-+... .. -+.-...++.|+.+|.|.+|........... .......
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~-~~s~~e~ 103 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKES--CRSERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDR-VCSGEES 103 (238)
T ss_pred hhhccccCCcccccchhhhhhhh--hhhhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHHHh-hhccccc
Confidence 34556677899999988864321 1110112222 11 1114567999999999999988742221111 1122223
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC-cceeeeeecCCCCcccccccCcEEEEe--ecCCCeE
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG-SLAYGADWQRGRSSLEGKRKNSLVATC--SFYDRLL 319 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~--~~~d~~i 319 (331)
|.++.-.-+...+..+++.++.++.|.+.. .+.+.....|+ .++..+..+..+ ++++++ | .|..+
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~~~~~e~~ivv~sd---------~~i~~a~~S-~d~~~ 171 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHNFESGEELIVVGSD---------EFLKIADTS-HDRVL 171 (238)
T ss_pred ceeccccccccceeEEeccCCceeeecccc--CceeeeeccccCCCcceeEEecCC---------ceEEeeccc-cchhh
Confidence 333332223223677777888877777765 46666666677 566666666666 577777 7 78888
Q ss_pred EEEcCCC
Q 020107 320 RIWMPES 326 (331)
Q Consensus 320 ~iW~~~~ 326 (331)
+.|+++.
T Consensus 172 k~W~ve~ 178 (238)
T KOG2444|consen 172 KKWNVEK 178 (238)
T ss_pred hhcchhh
Confidence 8888864
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.30 E-value=0.013 Score=53.86 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=97.9
Q ss_pred CCcEEEEE-cCCCeEEEEEccCCCceeeeecccCCCcc-eEEEEEec----CCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 161 QPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSKIHKMG-VCCIASIP----SDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 161 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
+.++|+.- .....|+-.|+..++.+..+.. |... |..++-.. .++..-+.|-.+..+..||.|-....+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 34454443 4568899999999999999988 5433 55443221 12345566777889999999975332221
Q ss_pred -e--eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 235 -T--SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 235 -~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
. .........+++-+.+ +.+++++.+|.|++|+--. .+....+.+-..+|.+++.+.|| ++|+.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DG---------kwila 635 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADG---------KWILA 635 (794)
T ss_pred ccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCC---------cEEEE
Confidence 0 1223445677777766 8899999999999998432 23333455777899999999999 46555
Q ss_pred eecCCCeEEEEcC
Q 020107 312 CSFYDRLLRIWMP 324 (331)
Q Consensus 312 ~~~~d~~i~iW~~ 324 (331)
.. +..|.+.+.
T Consensus 636 Tc--~tyLlLi~t 646 (794)
T PF08553_consen 636 TC--KTYLLLIDT 646 (794)
T ss_pred ee--cceEEEEEE
Confidence 54 677777775
No 364
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.018 Score=51.83 Aligned_cols=192 Identities=9% Similarity=0.035 Sum_probs=94.8
Q ss_pred CCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCc
Q 020107 116 SATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPF 184 (331)
Q Consensus 116 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 184 (331)
++...++|+.+ ..+..||+.++.+..+..+.........+.. ++.+.+.|+.++ .+..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 45566666643 3477889888766444443322222222222 567788888654 478899887642
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----------------------eEEEEEecCCCCCceeee-eecC
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----------------------YLRVWDVRSISKPVNETS-VCLG 240 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~-~~~~ 240 (331)
...-.. +........+.. ++.+.+.||.++ .+..||..+.. ..... ....
T Consensus 380 ~~~~~m-p~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~ 453 (557)
T PHA02713 380 KMLPDM-PIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTG 453 (557)
T ss_pred EECCCC-CcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCcc
Confidence 221111 101111122222 677778887653 46677776531 11100 0001
Q ss_pred CceEEEEECCCCCCeEEEEEecC------cEEEEEEcC-cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHN------GFAVVKVGG-EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
..-.+++...+ .+++.+|.++ .+..|+... .+...+..+....... +++.. ++ .+.+.||
T Consensus 454 r~~~~~~~~~~--~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~~-~~---------~iyv~Gg 520 (557)
T PHA02713 454 TIRPGVVSHKD--DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTILH-DN---------TIMMLHC 520 (557)
T ss_pred cccCcEEEECC--EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEEE-CC---------EEEEEee
Confidence 00112222222 4555554331 233455544 3344444444332222 22222 33 6889999
Q ss_pred cCCC--eEEEEcCCCcccC
Q 020107 314 FYDR--LLRIWMPESDCLT 330 (331)
Q Consensus 314 ~~d~--~i~iW~~~~~~~~ 330 (331)
.|+ .+..||+.++...
T Consensus 521 -~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 521 -YESYMLQDTFNVYTYEWN 538 (557)
T ss_pred -ecceeehhhcCccccccc
Confidence 888 7888998887653
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.088 Score=47.58 Aligned_cols=174 Identities=8% Similarity=-0.026 Sum_probs=94.1
Q ss_pred ccEEEEEEcCCCCeEEEEe------cCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------
Q 020107 106 SMCLCLEWNPSATSITVGL------SDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------ 171 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 171 (331)
..+.+.+.+|+|+.++... .|. .|.+++.. +....+ ..+ ...+.-.|+| ++..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~l--t~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQV--LEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceee--ecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence 3567888999999876665 243 45555542 222122 222 2377889998 65555555422
Q ss_pred ------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE---EEecCCCCCc---eeeeeec
Q 020107 172 ------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV---WDVRSISKPV---NETSVCL 239 (331)
Q Consensus 172 ------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~---~~~~~~~ 239 (331)
+.+.+.+++.+.... . ....|..+.|+| ++..++... ++.|.+ -....+...+ ..+....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~---~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---R---VPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCceEEEEeccCchhhh---c---cCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence 233333443332211 1 356799999999 998887765 477776 3322322111 1111223
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCC
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRG 296 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~ 296 (331)
...+.++.|.+++ .|++........+|.+.-. +.....+.. ....+..++-++.
T Consensus 496 ~~~~~~l~W~~~~--~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 496 GDTAVSLDWRTGD--SLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred CCccccceEecCC--EEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc
Confidence 3446889999995 3455444444445665443 222112222 3556777777664
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.21 E-value=0.14 Score=45.44 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCC------------------eEEEEEccCCCceeeeecccCCCc----ceEEEEEe---cCCCC---EEE
Q 020107 161 QPHMVYTGSDDC------------------KFSGWDIRESPFKLAFQNSKIHKM----GVCCIASI---PSDSN---TLL 212 (331)
Q Consensus 161 ~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~----~v~~~~~~---~~~~~---~l~ 212 (331)
....++.++.++ .|.-+|..+++....++.. .|.. ......+. ..++. .++
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence 346677776555 7999999999877665541 1211 00111111 11232 678
Q ss_pred EEecCCeEEEEEecCCCC
Q 020107 213 TGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~ 230 (331)
.++.+|.+...|.++++.
T Consensus 306 ~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EECCCceEEEEECCCCcE
Confidence 888999999999999743
No 367
>PHA02713 hypothetical protein; Provisional
Probab=97.13 E-value=0.025 Score=50.91 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=54.0
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccC-CCceeeeecccCCCcceEE
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRE-SPFKLAFQNSKIHKMGVCC 200 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~ 200 (331)
.+..||..++++..+..+.........+.+ ++.+.+.|+.+ ..+..||..+ .+-...-.. +........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~ 508 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHT 508 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-Cccccccee
Confidence 577899988877655544322222222222 45777777754 2467899887 443222111 112223333
Q ss_pred EEEecCCCCEEEEEecCC--eEEEEEecCC
Q 020107 201 IASIPSDSNTLLTGSYDE--YLRVWDVRSI 228 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 228 (331)
+.+ ++.+.++|+.|+ .+..||..+.
T Consensus 509 ~~~---~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 509 ILH---DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE---CCEEEEEeeecceeehhhcCcccc
Confidence 333 678999999888 6777777763
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.019 Score=49.24 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=92.7
Q ss_pred CCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC------CcEEEEEcCCCeEEEEEccCCCceeee
Q 020107 116 SATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ------PHMVYTGSDDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 116 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (331)
+.++ +..+.....++-.|++.|+. +..++-+.. |.-+.+.|.. ...-+.|-.+..|.-||.|-... ..+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-cee
Confidence 3344 44555567788889999876 777776664 7777777632 12234566788999999984332 111
Q ss_pred ecccCC----CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 189 QNSKIH----KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 189 ~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
...+.| .....|.+-. ...++++|+.+|.||+||- .+ ....+.+.+.+.+|..+..+.+| ..++++| +..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~-~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty 493 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IG-RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY 493 (644)
T ss_pred eeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hh-hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence 111112 2234455444 3558999999999999997 33 33344467889999999999996 4555554 445
Q ss_pred EEEEEE
Q 020107 265 FAVVKV 270 (331)
Q Consensus 265 ~~~~~~ 270 (331)
+.+.+.
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 545444
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.06 E-value=0.098 Score=40.88 Aligned_cols=134 Identities=17% Similarity=0.084 Sum_probs=86.9
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM 196 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 196 (331)
..+++.|+..+.+.-.|..+++..-...+ ..++.+-+.- -+++++.|...|.+++.+..++.....+.. .+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----LE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----hh
Confidence 34678888899999999988865222222 2234333332 246799999999999999999987777775 22
Q ss_pred ceEE-EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE-EEEECCCCCCeEEEEEecCc
Q 020107 197 GVCC-IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW-RIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 197 ~v~~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 264 (331)
.|.+ ....+ ++.++..|+.|++.+..|.++. ..+.. ..-.+.+. +=+..|.. +.+.++...+.
T Consensus 94 ~vk~~a~~d~-~~glIycgshd~~~yalD~~~~-~cVyk--skcgG~~f~sP~i~~g~-~sly~a~t~G~ 158 (354)
T KOG4649|consen 94 TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTY-GCVYK--SKCGGGTFVSPVIAPGD-GSLYAAITAGA 158 (354)
T ss_pred hhccceEEcC-CCceEEEecCCCcEEEeccccc-ceEEe--cccCCceeccceecCCC-ceEEEEeccce
Confidence 3322 33345 8899999999999999999984 44444 33333332 23344422 44555555555
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.02 E-value=0.13 Score=41.72 Aligned_cols=225 Identities=12% Similarity=0.117 Sum_probs=124.7
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK 102 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~ 102 (331)
++.|++|+ .+| +++++..... ....+ .+...|..+...|+ -+.|++-+. +.+ ++++....
T Consensus 7 ~~~L~vGt----------~~G-l~~~~~~~~~-~~~~i--~~~~~I~ql~vl~~----~~~llvLsd-~~l~~~~L~~l~ 67 (275)
T PF00780_consen 7 GDRLLVGT----------EDG-LYVYDLSDPS-KPTRI--LKLSSITQLSVLPE----LNLLLVLSD-GQLYVYDLDSLE 67 (275)
T ss_pred CCEEEEEE----------CCC-EEEEEecCCc-cceeE--eecceEEEEEEecc----cCEEEEEcC-CccEEEEchhhc
Confidence 47899998 677 9999993332 12222 23344999999998 556665544 777 55544321
Q ss_pred cc--------------------CccEEEEE--EcCCCCeEEEEecCCeEEEEEcccc--ce-eeeeeeecccceeEEEee
Q 020107 103 IS--------------------SSMCLCLE--WNPSATSITVGLSDGSVSIVSVVES--QL-EVLQQWKAHEFELWATSF 157 (331)
Q Consensus 103 ~~--------------------~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~~~~~~~~~~v~~~~~ 157 (331)
.. ...+...+ -...+...++......|.+|..... +. ...+++.- ...+.+++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~ 146 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAF 146 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEE
Confidence 11 12223333 1123333333444458888888763 22 34555553 467889999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC---------CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI---------HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.+ +.++.|..+ ...+.|+.++.....+..... ...++..+... ++.+|++ .|..-.+.|...
T Consensus 147 ~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~--~~~~g~fv~~~G- 217 (275)
T PF00780_consen 147 LG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLC--YDNIGVFVNKNG- 217 (275)
T ss_pred eC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEE--ecceEEEEcCCC-
Confidence 74 567776644 477899997765444322110 11234344433 3445543 344444555543
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
.+.......-...+.++++.. .++++. .++.+.++++.+ +++++++...
T Consensus 218 -~~~r~~~i~W~~~p~~~~~~~---pyli~~-~~~~iEV~~~~~--~~lvQ~i~~~ 266 (275)
T PF00780_consen 218 -EPSRKSTIQWSSAPQSVAYSS---PYLIAF-SSNSIEVRSLET--GELVQTIPLP 266 (275)
T ss_pred -CcCcccEEEcCCchhEEEEEC---CEEEEE-CCCEEEEEECcC--CcEEEEEECC
Confidence 222221234455677777754 344444 457788998888 5777777653
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0038 Score=34.93 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=26.0
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
...|.+++|+|..++||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568888899988889999999998888874
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.0035 Score=47.59 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
-+..+++|+.+|.|.+|....... ....+......|.+.--.-.++.+..++..+|.|+.|++.-.+....... |.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc---cc
Confidence 346799999999999998863111 11111122233333333323556889999999999999987765444443 55
Q ss_pred -cceEEEEEecCCCCEEEEE--ecCCeEEEEEecC
Q 020107 196 -MGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRS 227 (331)
Q Consensus 196 -~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~ 227 (331)
.++....... .+..++.. +.|..++.|++..
T Consensus 145 ~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 4444444444 45555555 6666666666654
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0054 Score=56.72 Aligned_cols=103 Identities=18% Similarity=0.318 Sum_probs=74.0
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
.+..++.|+..|.+...|...+ ..+...-..-..+|++++|+. ++..++.|-.+|.|.+||...++..+.+.. |.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e---~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITE---HG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeee---cC
Confidence 4456889999999999988753 222222223467899999995 899999999999999999999888877777 44
Q ss_pred cceEE---EEEecCCCCEEEEEecCCeEEEEEec
Q 020107 196 MGVCC---IASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 196 ~~v~~---~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
.+.+. +.+.. ++..++++...|. +|.+.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 44433 33444 4556788777775 56553
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.94 E-value=0.34 Score=45.17 Aligned_cols=220 Identities=9% Similarity=0.022 Sum_probs=136.4
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE---------
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL--------- 94 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------- 94 (331)
..||.+. .+.+++..++.-++. .+.+ .-......+++.+. ...+++.+.....
T Consensus 685 d~l~~~~-----------~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~----sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 685 DSLASAN-----------GGALTIGTIDEIQKLHIRTV--PLGESPRRICYQES----SLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred ceEEEec-----------CCceEEEEecchhhcceeee--cCCCChhheEeccc----ceEEEEEecccccchhhcCCcc
Confidence 5677775 788888888775422 2222 22344667777775 4444444332211
Q ss_pred ------EEecCCCcc---c-------CccEEEEEEcCC-CCeEEEEec----------CCeEEEEEccc-cceeeeeeee
Q 020107 95 ------LRDITGEKI---S-------SSMCLCLEWNPS-ATSITVGLS----------DGSVSIVSVVE-SQLEVLQQWK 146 (331)
Q Consensus 95 ------iw~~~~~~~---~-------~~~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~~ 146 (331)
+.|-.+.+. | ...+.+..|..| +.++++|.. .|.|.++.... ++++.+.+..
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 344333222 1 223455568777 667887753 58889998887 5444444433
Q ss_pred cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
- ++.+.++.. .+++++| +-+..|++|+..+.+....-. .+..++..+...- .++.+++|..-+.+.+.-.+
T Consensus 828 v-~Gav~aL~~--fngkllA--~In~~vrLye~t~~~eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 828 V-KGAVYALVE--FNGKLLA--GINQSVRLYEWTTERELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred e-ccceeehhh--hCCeEEE--ecCcEEEEEEccccceehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEe
Confidence 2 344555543 2445554 346889999998875443333 3788889998888 89999999998999888877
Q ss_pred CCCCCceee-eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 227 SISKPVNET-SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 227 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
..+..+.+. ..-+....+++.+-.+ ..++.+-..+.+.+....+
T Consensus 899 ~~eg~f~evArD~~p~Wmtaveil~~--d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 899 GDEGNFEEVARDYNPNWMTAVEILDD--DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred ccCCceEEeehhhCccceeeEEEecC--ceEEeecccccEEEEEecC
Confidence 654333331 2346677888888776 6666776777766666654
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.16 Score=40.59 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=94.7
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCCcc-EEEecCCCccc-------CccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADADGG-LLRDITGEKIS-------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-iiw~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 136 (331)
-...+.++.|+|+ .+.|++...... +++-...++.- -...-.+.+..++++.++--.++.+.++.+..
T Consensus 84 ~~~nvS~LTynp~----~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 84 ETANVSSLTYNPD----TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccceeeCCC----cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3455999999999 555555544444 44444443331 11123566666666666666688888887765
Q ss_pred cce--------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC-------CcceEEE
Q 020107 137 SQL--------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH-------KMGVCCI 201 (331)
Q Consensus 137 ~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~~ 201 (331)
... .++............++|.| ..+.|..+-.-.-+.||................+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 421 01111122255678999999 5566666666666777766543311111110011 2347888
Q ss_pred EEecCCCCEEEEEecCCeEEEEEecC
Q 020107 202 ASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
.|++..+.+|+-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 99987888888888999888888775
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.85 E-value=0.29 Score=44.30 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=80.5
Q ss_pred CCeEEEEcCCc--cE-----EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecC------CeEEEEEccccceee
Q 020107 82 GPFLAQADADG--GL-----LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSD------GSVSIVSVVESQLEV 141 (331)
Q Consensus 82 ~~~l~~~~~dg--~i-----iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~ 141 (331)
+.+++.|+.++ .. .++..+... ....-.+++.. ++...++|+.| .++..||..++++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 55777787775 22 444444321 22222333333 45677888888 367889999888765
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
+..+........... .++.+.++|+.|| .+..||.++.+-...-. .............++.+.++||.
T Consensus 364 ~a~M~~~R~~~~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~----m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP----MLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred cCCccCccccceeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCC----CCcceeeeEEEEECCEEEEEcCc
Confidence 555543333232222 2668889999886 47788888765322221 12233333333337888888886
Q ss_pred CC------eEEEEEecCC
Q 020107 217 DE------YLRVWDVRSI 228 (331)
Q Consensus 217 d~------~i~iwd~~~~ 228 (331)
++ ++..||..+.
T Consensus 437 ~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCCccccceEEEEcCCCC
Confidence 64 4677877763
No 377
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.85 E-value=0.0066 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
....|.+++|+| ..++||.+..+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 356799999999 99999999999999999983
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.83 E-value=0.28 Score=42.59 Aligned_cols=240 Identities=12% Similarity=0.047 Sum_probs=126.2
Q ss_pred EeEEEEcCCCCCCCCeEEEE-cCCcc----E-EEecCCCcccCcc-----EEEEEEcCCCCeEEEEecC-----------
Q 020107 69 IFDIKWSPVGGNAGPFLAQA-DADGG----L-LRDITGEKISSSM-----CLCLEWNPSATSITVGLSD----------- 126 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~-~~dg~----i-iw~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d----------- 126 (331)
+....++|+ ++++|.+ +..|. + +.|+.+++..... ...+.|.++++.|+....+
T Consensus 126 ~~~~~~Spd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 446789999 7777755 44444 2 8999887653222 1238999998887665432
Q ss_pred CeEEEEEccccceeeeeeeecccce--eEEEeeCCCCCcEEEE-EcCC---CeEEEEEccCC----CceeeeecccCCCc
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFE--LWATSFDVHQPHMVYT-GSDD---CKFSGWDIRES----PFKLAFQNSKIHKM 196 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~-~~~d---g~i~i~d~~~~----~~~~~~~~~~~~~~ 196 (331)
..|+.|.+.+........+...... ...+..++ ++++++. .... ..+.+.|+..+ .....+.. ...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~ 277 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---RED 277 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSS
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCC
Confidence 2378888877554323444433322 56778887 6666554 3322 35778888764 11222222 333
Q ss_pred ce-EEEEEecCCCCEEEEEe---cCCeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 197 GV-CCIASIPSDSNTLLTGS---YDEYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 197 ~v-~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
.+ ..+... .+.+++... ..+.|.-.++..... ........+.. .+..+.... ..++..-..++...+.
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK---DYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET---TEEEEEEEETTEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC---CEEEEEEEECCccEEE
Confidence 34 334333 343433332 345677777776532 12223455555 455555544 3455555555544444
Q ss_pred EcCcc-cceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCccc
Q 020107 270 VGGEK-AEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDCL 329 (331)
Q Consensus 270 ~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~~ 329 (331)
+.+.. +.....+.. -.+.|..+...++.. .+.++.++ .-.++..||+.++.+
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~--------~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSD--------ELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-S--------EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCC--------EEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44433 344444332 344566666656554 45555542 346888899888764
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.80 E-value=0.19 Score=40.23 Aligned_cols=153 Identities=12% Similarity=-0.065 Sum_probs=85.1
Q ss_pred eeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEE-ec
Q 020107 151 ELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWD-VR 226 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd-~~ 226 (331)
.+.+.++++ ++..++... ....+.++... ........ ...+..-.|++ ++...+....+...+++. ..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~----g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT----GGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc----CCccccccccC-CCCEEEEEcCCCceEEEEecC
Confidence 688999998 556554444 33445555443 32333222 33788889999 777777766666666664 22
Q ss_pred CCCC-CceeeeeecCCceEEEEECCCCCCeEEEEEe--cCcEEEEEEcC-ccc------ceeEEeecCCcceeeeeecCC
Q 020107 227 SISK-PVNETSVCLGGGVWRIKHHPFIPGLVLAACM--HNGFAVVKVGG-EKA------EVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 227 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~------~~~~~~~~h~~~v~~~~~~~~ 296 (331)
.+.. +...-.....+.|..++++||+....++... .+.+.+--+.. ..+ ............+++++|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 2222 2211011122289999999999655555522 34555544432 222 111222233568899999999
Q ss_pred CCcccccccCcEEEEeecCCCeEE
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
. .+++.+...++.+.
T Consensus 177 ~---------~L~V~~~~~~~~~~ 191 (253)
T PF10647_consen 177 S---------TLVVLGRSAGGPVV 191 (253)
T ss_pred C---------EEEEEeCCCCCcee
Confidence 8 56655552444333
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.79 E-value=0.12 Score=46.66 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=79.7
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------CCC--eEEEEEccCCCceeeeecccCCCcc
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------DDC--KFSGWDIRESPFKLAFQNSKIHKMG 197 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 197 (331)
+|.+.-.+ .+...++....+....+.+.+++| +++.++... .|. .|.+++.. +. ...+.. ...
T Consensus 328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~-~~~lt~----g~~ 398 (591)
T PRK13616 328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GV-AVQVLE----GHS 398 (591)
T ss_pred CCeEEEec--CCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Cc-ceeeec----CCC
Confidence 56554433 222233333323334678889999 666555443 233 45555542 22 233322 223
Q ss_pred eEEEEEecCCCCEEEEEecC------------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 198 VCCIASIPSDSNTLLTGSYD------------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
...-.|+| ++..+++.... +.+.+.+++.+ .. . ....+.|..++|+||+....++. .+.+
T Consensus 399 ~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g-e~-~---~~~~g~Issl~wSpDG~RiA~i~--~g~v 470 (591)
T PRK13616 399 LTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS-AV-A---SRVPGPISELQLSRDGVRAAMII--GGKV 470 (591)
T ss_pred CCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCc-hh-h---hccCCCcCeEEECCCCCEEEEEE--CCEE
Confidence 78889999 87777666432 22222233221 11 1 13356799999999985544444 3555
Q ss_pred EEEEE-cCcccc-ee---EEee-cCCcceeeeeecCCC
Q 020107 266 AVVKV-GGEKAE-VL---ETYA-KHGSLAYGADWQRGR 297 (331)
Q Consensus 266 ~~~~~-~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~ 297 (331)
.+--+ ....+. .+ ..+. +-...+.+++|..++
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 44222 222232 11 1122 233346889999998
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.12 Score=44.55 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=87.1
Q ss_pred EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC-------CEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS-------NTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
++.++.....|+-.|+..++.+..+.. +.. |+-+.+.| +. ..-+.|-.|..|.-||.|-.........
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 455566677899999999999999988 444 77777877 32 2234566788899999996443222111
Q ss_pred eec----CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 237 VCL----GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 237 ~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
..| .....|.+-..+ +.+++++.++.|++|+--. .+....+.+-..+|..+..+.+|.
T Consensus 423 q~kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred eccccccccccceeeecCC--ceEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCc
Confidence 222 223455555555 8899999999999988633 233445677888999999999994
No 382
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.66 E-value=0.34 Score=44.19 Aligned_cols=108 Identities=8% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCCeEEEEecCCeEEEEEccc-------c-----------ceeeeeeeecccceeEEEeeC--CCCCcEEEEEcCCCeEE
Q 020107 116 SATSITVGLSDGSVSIVSVVE-------S-----------QLEVLQQWKAHEFELWATSFD--VHQPHMVYTGSDDCKFS 175 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~ 175 (331)
..+.|+++..||.|.+|.+++ . ..+|...+. -...+++++++ . ..++||+++....|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEE
Confidence 446788899999999997643 0 011222333 23468899987 5 567888888888888
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCC--CC---EEEEEecCCeEEEEEe
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--SN---TLLTGSYDEYLRVWDV 225 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~d~~i~iwd~ 225 (331)
||-...............+..-|.+|+|.+.+ +. .+++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87665422111111011256779999998743 22 7888889999999988
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.62 E-value=0.25 Score=39.18 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 108 CLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
...+.|..++.++-+.+.-| .|+.+|+.+++......+.. ..--..++.. +..+....=.++...+||..+-+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 34666766666666666655 78999999987644444432 2222334443 3466666678899999999988777
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eecCC---ceEEEEECCCCCCeEEEEE-
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGG---GVWRIKHHPFIPGLVLAAC- 260 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~~- 260 (331)
..+.. ...=..++. ++..|+.......|.++|..+.+. ...+. ..... .++.+.|-. +.+.+--
T Consensus 124 ~~~~y----~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i~---G~IyANVW 192 (264)
T PF05096_consen 124 GTFPY----PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYIN---GKIYANVW 192 (264)
T ss_dssp EEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEET---TEEEEEET
T ss_pred EEEec----CCcceEEEc---CCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEEc---CEEEEEeC
Confidence 77765 334455653 566666666677899999887532 22211 12222 355677763 4555554
Q ss_pred ecCcEEEEEEcCcccceeEEeec------------C---CcceeeeeecCCCCcccccccCcEEEEee
Q 020107 261 MHNGFAVVKVGGEKAEVLETYAK------------H---GSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~------------h---~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
..+. |+.+...+++....+.- + ..-.+++++.|... ++++||=
T Consensus 193 ~td~--I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~--------~l~vTGK 250 (264)
T PF05096_consen 193 QTDR--IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD--------RLFVTGK 250 (264)
T ss_dssp TSSE--EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT--------EEEEEET
T ss_pred CCCe--EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC--------EEEEEeC
Confidence 3344 56666655676665531 1 34678999999885 7788774
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.59 E-value=0.32 Score=39.89 Aligned_cols=233 Identities=8% Similarity=0.003 Sum_probs=99.5
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCccc---CccEEEEEEcCCCCeEEEEecCC
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKIS---SSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
+.+...-...+.+|.|... ..-+++|. .+.+ -|........ .....++.|..+ +.+++ +..+
T Consensus 9 ~~v~l~t~~~l~dV~F~d~----~~G~~VG~-~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g 81 (302)
T PF14870_consen 9 QQVSLPTDKPLLDVAFVDP----NHGWAVGA-YGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG 81 (302)
T ss_dssp EEEE-S-SS-EEEEEESSS----S-EEEEET-TTEEEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT
T ss_pred EEeecCCCCceEEEEEecC----CEEEEEec-CCEEEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc
Confidence 3333344567999999955 55666665 4555 3443332222 234667777643 33444 4555
Q ss_pred eEEEEEcccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 128 SVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 128 ~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
.| +...+.+ .++.+..-..-......+.... +...+++ +..|. ||-...+-..-.... ..-...+..+.-++
T Consensus 82 ~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~- 154 (302)
T PF14870_consen 82 LL-LHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTWQAVV-SETSGSINDITRSS- 154 (302)
T ss_dssp EE-EEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSEEEEE--S----EEEEEE-T-
T ss_pred eE-EEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCeeEcc-cCCcceeEeEEECC-
Confidence 43 3333333 2322211001111222333222 3333333 34454 343333322211111 11456788888888
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE----ee
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET----YA 282 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 282 (331)
++.+++++.......-||--. .........-...|..|.|.|++ .+++++ ..+.++.-+.... .+.... ..
T Consensus 155 dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~s~~~~~-~~~w~~~~~~~~ 229 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQFSDDPDD-GETWSEPIIPIK 229 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTE-EEEE---B-TTS
T ss_pred CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCC-CEEEEe-CCcEEEEccCCCC-ccccccccCCcc
Confidence 999999998777677787543 22333234567889999999995 554544 4444333321111 111111 11
Q ss_pred cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
...-.+.+++|.+++ ...|+|+ .|.+..
T Consensus 230 ~~~~~~ld~a~~~~~---------~~wa~gg--~G~l~~ 257 (302)
T PF14870_consen 230 TNGYGILDLAYRPPN---------EIWAVGG--SGTLLV 257 (302)
T ss_dssp S--S-EEEEEESSSS----------EEEEES--TT-EEE
T ss_pred cCceeeEEEEecCCC---------CEEEEeC--CccEEE
Confidence 122247889999887 5777666 565543
No 385
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.43 Score=40.94 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=118.2
Q ss_pred EEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCce
Q 020107 109 LCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFK 185 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 185 (331)
..++.++.++.+++.. .++.|.+.|....+. ...... ......++++|.+....++-. .++.+.+.|..+.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--LGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccce--eeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 4677888888655554 468999999776543 222221 225668899984444444444 3689999998888766
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee---eeecCCceEEEEECCCCCCeEEEEEe
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
..... -..+ ..+++.| ++..++... .++.|.+.|.... ....-. ..........+.++|++...+++-..
T Consensus 154 ~~~~v---G~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 ATIPV---GNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEec---CCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 65433 2233 8899999 887555554 7889999997663 211100 02333455778999998444444444
Q ss_pred cCcEEEEEEcCcccceeEE-ee-cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 262 HNGFAVVKVGGEKAEVLET-YA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~-~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
...-.+..+.......... .. +-. ....+...|++ ..+.......+.+.+-|..+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g---------~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG---------KAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC---------CEEEEEecCCCeEEEEeCCCC
Confidence 3212244443332333333 11 122 45668888888 455554314577777766553
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.26 Score=44.58 Aligned_cols=185 Identities=12% Similarity=0.136 Sum_probs=101.9
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcCCccE------EEe
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADADGGL------LRD 97 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~i------iw~ 97 (331)
.+.++|+++. ....-..+..||...++ ......-.... =.+++- -+ +.+.|+|+.||.- .||
T Consensus 334 ~lYv~GG~~~----~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~~-l~----g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 334 KLYVVGGYDS----GSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVAV-LD----GKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred EEEEEccccC----CCcccceEEEecCCCCc--eeccCCccCccccceeEE-EC----CEEEEEeccccccccccEEEec
Confidence 5778887542 01134677788887765 22221111111 111111 12 6789999999876 666
Q ss_pred cCCCcccC-----ccEEEEEE-cCCCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE
Q 020107 98 ITGEKISS-----SMCLCLEW-NPSATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV 165 (331)
Q Consensus 98 ~~~~~~~~-----~~v~~~~~-~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 165 (331)
..+.+.+. ........ .-++...++|+.+ .++..||..++++..+..+........ ++. .++.+.
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iY 479 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIY 479 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEE
Confidence 66654421 11222222 2266677777754 457889999988866666553333333 332 256888
Q ss_pred EEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-----EEEEEecC
Q 020107 166 YTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-----LRVWDVRS 227 (331)
Q Consensus 166 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~ 227 (331)
+.|+.|+ +|..||..+.+-... ...+.....+..+.+ ++.+.++|+.|+. |..||..+
T Consensus 480 vvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 480 VVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence 8888776 377899887764333 211112333322333 6778888887763 55565554
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=0.00032 Score=63.11 Aligned_cols=177 Identities=20% Similarity=0.289 Sum_probs=103.8
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.-|.|||+-+..-++.++- +++.|++.+.+... +.++++|...+.+++|-.. + ++...
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~----------~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~----g-~~~l~- 241 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGL----------KGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAE----G-VLKLA- 241 (1283)
T ss_pred CCcceeeecccccccceeeecc----------CCCceeEeeechHH---HHHHHhcCCCcccHHHHhh----c-hhhhe-
Confidence 3557899999988666777775 78999998887754 2444669999999988776 2 22211
Q ss_pred CCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cc--eeeeeeeeccc-ceeEEEeeCCCC----
Q 020107 90 ADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQ--LEVLQQWKAHE-FELWATSFDVHQ---- 161 (331)
Q Consensus 90 ~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~-~~v~~~~~~~~~---- 161 (331)
..+|||..++.++.||.++.|.+.- ++ ..++..++.|+ .+-.|.-++.+.
T Consensus 242 ----------------------~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v 299 (1283)
T KOG1916|consen 242 ----------------------SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV 299 (1283)
T ss_pred ----------------------eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCC
Confidence 1688999999999999988887643 11 12345566665 222222233211
Q ss_pred --C--cEEEEEc-CCCeEEEEEccCCCce-----eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 162 --P--HMVYTGS-DDCKFSGWDIRESPFK-----LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 162 --~--~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
+ .++++++ .+..+++|.....+|. ..+.....|...|+.+.....--..++.-..++.|.+|--+.
T Consensus 300 ~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 300 SIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 1 1233433 4567888887766654 112111123333333221110012244456788888886554
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.45 E-value=0.19 Score=44.15 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=90.5
Q ss_pred ceeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC----CCCEEEEEecCCeEEEE
Q 020107 150 FELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS----DSNTLLTGSYDEYLRVW 223 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~iw 223 (331)
.++..++|.- +...+++.- .+|.+++=|.+ ++. .-..|..+.|.|. .+.+||+- ....|.+|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~------viG----qFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK------VIG----QFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVW 87 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCcc------Eee----ccceeeeeeecCcccCCCCceEEEe-ccceEEEE
Confidence 4688999972 434444432 23333322211 111 2345899999984 23455555 46789999
Q ss_pred EecCCC----CCceeeeeecCC----ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 224 DVRSIS----KPVNETSVCLGG----GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 224 d~~~~~----~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
-+.... +.+....-.... -...+.|+|.. ..+.+-...+.-.+..+..+..+...-++ -.+.|.+.+|.+
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~ 165 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK 165 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecC
Confidence 986321 111110111111 22457899985 45555455555456666665455555554 467899999999
Q ss_pred CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
||. +++++.| ..=.-++||-...
T Consensus 166 DG~--------RLVVAvG-SsLHSyiWd~~qK 188 (671)
T PF15390_consen 166 DGQ--------RLVVAVG-SSLHSYIWDSAQK 188 (671)
T ss_pred cCC--------EEEEEeC-CeEEEEEecCchh
Confidence 997 7777777 6667789986544
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.084 Score=49.69 Aligned_cols=142 Identities=11% Similarity=-0.025 Sum_probs=89.6
Q ss_pred ccEEEEEEcCCCCeEEEEec--CCeEEEEEcccccee---eeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 106 SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLE---VLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~---~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
.++..+...+|+...++... +-.|..||+++-... ....+. ....-..++.|+|.=....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 44555666677766444433 447889999862110 011111 1223456788998656677888889999
Q ss_pred EEEEccCCCc-eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC-CCceeeeeecCCceEEEEECCCC
Q 020107 175 SGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS-KPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 175 ~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
++..+..... ...+. -....++++|+| .|..++.|-..|++.-|...-.. ..+..........|.+|+|-...
T Consensus 181 ~V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecce
Confidence 9988764322 22222 466789999999 99999999999999888664321 11111001125789999998773
No 390
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.33 E-value=0.71 Score=41.10 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred EEcCCCCeEEEEecCC------------------eEEEEEccccceeeeeeeecccc---------eeEEEeeCCCCC--
Q 020107 112 EWNPSATSITVGLSDG------------------SVSIVSVVESQLEVLQQWKAHEF---------ELWATSFDVHQP-- 162 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~-- 162 (331)
.+.+.+..+++++.++ .|.-+|.++++..=......+.. .+..+. ..++
T Consensus 223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~ 300 (488)
T cd00216 223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKP 300 (488)
T ss_pred eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc--ccCCCe
Confidence 4445567788887665 78889998886522222221210 011111 0122
Q ss_pred -cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE------------------ecCCeEEEE
Q 020107 163 -HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG------------------SYDEYLRVW 223 (331)
Q Consensus 163 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~------------------~~d~~i~iw 223 (331)
..++.++.+|.+...|.++++.+...... ...+...| ..++.+ ..+|.+.-.
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 36788889999999999999866554430 01122222 222221 235778888
Q ss_pred EecCCCCCceeeeeecC------Cce--EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107 224 DVRSISKPVNETSVCLG------GGV--WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK 283 (331)
Q Consensus 224 d~~~~~~~~~~~~~~~~------~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (331)
|+.+++.........+. .+. ..+... + +.+++++.++.+..++. .+++.+-+++-
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~--g-~~v~~g~~dG~l~ald~--~tG~~lW~~~~ 434 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA--G-NLVFAGAADGYFRAFDA--TTGKELWKFRT 434 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEec--C-CeEEEECCCCeEEEEEC--CCCceeeEEEC
Confidence 88876433332111000 111 112222 2 56666667777555554 44777776653
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.33 E-value=0.16 Score=44.49 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=88.8
Q ss_pred ccEEEEEEcCCCCeEE-EEe--cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC---CcEEEEEcCCCeEEEEEc
Q 020107 106 SMCLCLEWNPSATSIT-VGL--SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ---PHMVYTGSDDCKFSGWDI 179 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~-~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~ 179 (331)
.++..++|. ||+.++ +.- .+|.+++=|. ..+. .-..|..+.|.|.. ..-+++......|.+|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-----~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-----KVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc-----cEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 467788886 555533 322 2444433221 1122 33458899999841 223445556789999998
Q ss_pred cCC-----Cceeeeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107 180 RES-----PFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 180 ~~~-----~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
... +....... .....--...+.|+| ....|++-.....-.+++.+.....+.. .....+.|.+.+|.+||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVka-Di~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKA-DIKTSGLIHCACWTKDG 167 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEE-eccCCceEEEEEecCcC
Confidence 621 11111110 000111234577999 8888887776666667788775444443 35667889999999999
Q ss_pred CCeEEEEEecCcEEEEE
Q 020107 253 PGLVLAACMHNGFAVVK 269 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ 269 (331)
..++++.|+.=..++|+
T Consensus 168 ~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CEEEEEeCCeEEEEEec
Confidence 77777776643333444
No 392
>PHA03098 kelch-like protein; Provisional
Probab=96.31 E-value=0.33 Score=43.79 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCCeEEEEecCC------eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCCCc
Q 020107 116 SATSITVGLSDG------SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRESPF 184 (331)
Q Consensus 116 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 184 (331)
++..++.|+.++ .+..||..+.++..+..+.........+.+ ++.+++.|+.+ ..+..||..+.+-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 445566665432 577888888776444333322222222222 55777888765 3577888876543
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecC
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRS 227 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~ 227 (331)
...-.. +..... .+++.. ++.+.+.||.+ ..+..||..+
T Consensus 371 ~~~~~l-p~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 371 REEPPL-IFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eeCCCc-CcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 221111 101111 122222 56777777732 3578888875
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.22 E-value=0.029 Score=30.39 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=27.2
Q ss_pred ceeEEEeeCCCCC--cEEEEEcCCCeEEEEEccC
Q 020107 150 FELWATSFDVHQP--HMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 150 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 181 (331)
+.+.+++|+|... .+|+.+-..+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998555 6888888899999999995
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.22 E-value=0.35 Score=43.67 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=70.1
Q ss_pred eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEEC--CCCCCeEEEEEecCcEEEEEEcCc--
Q 020107 198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHH--PFIPGLVLAACMHNGFAVVKVGGE-- 273 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 273 (331)
+.-+.-+. -++..++.+....+.|||.+...-...+ .....+.|..+.|. |++ +.+++.|....+.++.-...
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEE-SFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEee-eecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhh
Confidence 33344444 3444444445568999999986422222 22447889999987 455 67888899888777654211
Q ss_pred -----ccceeEEe--ecCC-cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 274 -----KAEVLETY--AKHG-SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 274 -----~~~~~~~~--~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
....+..+ ..|+ .+|.+..|.++| .++.++ ++.+.|++-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----------~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----------TLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCC----------eEEEEe--CCEEEEECC
Confidence 12233333 3444 589999999998 455554 678888764
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.15 E-value=0.74 Score=39.55 Aligned_cols=91 Identities=8% Similarity=-0.047 Sum_probs=53.6
Q ss_pred EEEEcCCCCeEEEEecCCeEEE---EEccc-c--ceeeeee----eecc-cceeEEEeeCCC----------CCcEEEEE
Q 020107 110 CLEWNPSATSITVGLSDGSVSI---VSVVE-S--QLEVLQQ----WKAH-EFELWATSFDVH----------QPHMVYTG 168 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~i~i---~d~~~-~--~~~~~~~----~~~~-~~~v~~~~~~~~----------~~~~l~~~ 168 (331)
.++.+|+++.|+.+..+..+.+ |+... + ....... +... ...|+++.|-|- +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4566777777777766655544 43311 1 0011111 1111 146776666542 34689999
Q ss_pred cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI 204 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 204 (331)
..+|.|++|... +..+..-.. |..+|..|...
T Consensus 86 ~ssG~vrfyte~-G~LL~~Q~~---h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVLLLSQLL---HEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chHHHHHhc---CccceEEEEec
Confidence 999999999974 544444444 78888888765
No 396
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.53 Score=37.72 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=136.8
Q ss_pred CCCcEEEEeccCcccceEEeEeeec-CcEeEEEEcCCCCCCCCeEEEEc-CCccEEEecCCCccc---------CccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDT-AGIFDIKWSPVGGNAGPFLAQAD-ADGGLLRDITGEKIS---------SSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~-~dg~iiw~~~~~~~~---------~~~v~~ 110 (331)
.+.-++|.|+.+...+...- .... +--.++..+ +++..++. .||.++.|+.....+ ......
T Consensus 104 ~ssGL~IvDIS~P~sP~~~~-~lnt~gyaygv~vs------Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~ 176 (370)
T COG5276 104 WSSGLRIVDISTPDSPTLIG-FLNTDGYAYGVYVS------GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD 176 (370)
T ss_pred CCCceEEEeccCCCCcceec-cccCCceEEEEEec------CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence 46679999998876443322 2222 333444444 44777777 677777777765432 111123
Q ss_pred EEEcCCCCeEEEEecCCeEEEEEccccceee-eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 111 LEWNPSATSITVGLSDGSVSIVSVVESQLEV-LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
++. .|++-..+..|+-+.+.|+....... +.... -...+.++..++ +..+++. .+--+.+-|....+....+.
T Consensus 177 v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsd-nr~y~vv--y~egvlivd~s~~ssp~~~g 250 (370)
T COG5276 177 VAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSD-NRAYLVV--YDEGVLIVDVSGPSSPTVFG 250 (370)
T ss_pred EEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecC-CeeEEEE--cccceEEEecCCCCCceEee
Confidence 333 46777888889999999998754221 22222 233677888775 4334433 34557788888776555554
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
... ...+.++.--|..+++......+.-+-+-|+.+...|...-.....+ .-..+..+. ..+..+-.+ ...++
T Consensus 251 sye--t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~---~y~yiadkn-~g~vV 324 (370)
T COG5276 251 SYE--TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYG---NYNYIADKN-TGAVV 324 (370)
T ss_pred ccc--cCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEec---CeeEeccCC-ceEEE
Confidence 421 22233332112256777777778888888888765554431111222 333444443 222233222 33355
Q ss_pred EEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 269 KVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
+..+. +......+....+.+.+.+-+. +.+.+.. .++.+.+|+.
T Consensus 325 ~~s~~--s~m~~~~g~~ti~~s~~v~~~~---------q~~y~~d-~~~gl~i~~~ 368 (370)
T COG5276 325 DASPP--SMMDKRPGRPTIGQSCDVSVDT---------QIIYSTD-YNGGLSIIEY 368 (370)
T ss_pred eCCCh--hhcccccCcceEeeecceEEEe---------eEEEEee-cCCCEEEEEe
Confidence 55442 2222222223334444555554 5677777 8899999875
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.11 Score=48.90 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=82.8
Q ss_pred eeEEEeeCCCCCcE--EEEEcCCCeEEEEEccCCCcee-----eeec---ccCCCcceEEEEEecCCCCEEEEEecCCeE
Q 020107 151 ELWATSFDVHQPHM--VYTGSDDCKFSGWDIRESPFKL-----AFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220 (331)
Q Consensus 151 ~v~~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 220 (331)
++..+...+ +... ++..+.+-.|..||+++-.... .+.. .........++.|+|.-....+.+..|+.|
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 344444444 4332 3334445578899998643211 1111 000233457888998556678888899999
Q ss_pred EEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCcceeeeeecCC
Q 020107 221 RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGSLAYGADWQRG 296 (331)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~ 296 (331)
++..+......... .......++++|+|.| ..++++-..+.+..|... .+....+.+ ....|.++.|...
T Consensus 181 ~V~~~~~~~~~v~s--~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~---leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS--FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS---LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcc--cCcccceeeEEecccc-ceeeEecCCCeEEEeecc---cceeecccCCCcCCCcceeEEEEecc
Confidence 99888764333333 4667789999999997 455555555554333332 232222221 1467999999887
Q ss_pred C
Q 020107 297 R 297 (331)
Q Consensus 297 ~ 297 (331)
.
T Consensus 255 ~ 255 (1405)
T KOG3630|consen 255 Q 255 (1405)
T ss_pred e
Confidence 6
No 398
>PHA03098 kelch-like protein; Provisional
Probab=96.04 E-value=0.48 Score=42.75 Aligned_cols=105 Identities=7% Similarity=0.082 Sum_probs=54.4
Q ss_pred CCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccC
Q 020107 116 SATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRE 181 (331)
Q Consensus 116 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~ 181 (331)
+++..+.|+.+ ..+..||+.++++..+..+....... +++.. ++.+++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 45666666631 46888999887775444332211111 22222 45677777643 2388899887
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecC
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRS 227 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 227 (331)
.+-...-.. +........+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 466 ~~W~~~~~~-~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 466 NKWTELSSL-NFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CceeeCCCC-CcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 653222111 101111122222 56677777754 3577777665
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.72 Score=38.05 Aligned_cols=195 Identities=9% Similarity=-0.025 Sum_probs=98.7
Q ss_pred EEcCCCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 112 EWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 112 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.|.++...|+ +--..+.|.-|+..+++. ..+. ....+.++..- +.+..|+++. ..+.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~-~p~~~~~~~~~-d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK---RVFP-SPGGFSSGALI-DAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce---EEEE-CCCCcccceee-cCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 4666666444 444578888898876643 2333 22233444433 2445555554 3456677655543222222
Q ss_pred -ccC-CCcceEEEEEecCCCCEEEEEec------C---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 191 -SKI-HKMGVCCIASIPSDSNTLLTGSY------D---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 191 -~~~-~~~~v~~~~~~~~~~~~l~~~~~------d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
... .....+.+...| ++.+.++... + ..=.+|-+..... .......+-..-+.|+|||+++.++++=
T Consensus 104 ~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 104 PEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEe
Confidence 111 124456777888 6665554333 0 0113443332112 2221233344567899999985455454
Q ss_pred EecCcEEEEEEcCcc----cc-eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC-eEEEEcCC
Q 020107 260 CMHNGFAVVKVGGEK----AE-VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR-LLRIWMPE 325 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~----~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~-~i~iW~~~ 325 (331)
+..+.+..+.+.... .+ ....+....+..-+++...++ .+.+++. .+| .|.+|+.+
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG---------~lw~~a~-~~g~~v~~~~pd 243 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG---------NLWVAAV-WGGGRVVRFNPD 243 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC---------CEEEecc-cCCceEEEECCC
Confidence 444665555554211 11 112222334555566666666 4554444 344 99999988
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.96 E-value=0.25 Score=44.56 Aligned_cols=106 Identities=9% Similarity=0.011 Sum_probs=68.8
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC-CCcEEEEEcCCCeEEEEEccC-----C----Cce
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH-QPHMVYTGSDDCKFSGWDIRE-----S----PFK 185 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-----~----~~~ 185 (331)
-++..++-+...++.|||.+.+..+....+ .....|.++.|... +++.+++.+..+.|.+|--.. . ..+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 344444444456899999998876555556 35668999999742 567788888889998885421 1 112
Q ss_pred eeeecccCCC-cceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 186 LAFQNSKIHK-MGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 186 ~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
..+.. ..++ .+|....|.+ +|.+++.. ++.+.|+|-.
T Consensus 119 ~~i~i-~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 119 RKIDI-SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEe-ecCCCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence 22322 1233 6789999998 77655544 3678888754
No 401
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.92 E-value=1.6 Score=41.35 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=97.1
Q ss_pred EEecCCCcccCccEEEEEEc---C----CCCeEEEEecCCeEEEEEccccc-------------eeeeeeeec---ccce
Q 020107 95 LRDITGEKISSSMCLCLEWN---P----SATSITVGLSDGSVSIVSVVESQ-------------LEVLQQWKA---HEFE 151 (331)
Q Consensus 95 iw~~~~~~~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~---~~~~ 151 (331)
.|.+.. ..+|..|+|. . ...+|++- ....+.|+...-.+ ..++..+.. ...+
T Consensus 73 ~w~i~~----~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~ 147 (765)
T PF10214_consen 73 AWSIDD----GSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFP 147 (765)
T ss_pred eeEcCC----CCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCc
Confidence 555443 3677888887 2 12344443 44566666621111 122333331 2346
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCC--CceeeeecccCC----------CcceEEEEEecCCCCEEEEEecCCe
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRES--PFKLAFQNSKIH----------KMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
..+++|+|.+...||.....|...|||+... .....+.....+ .+.-..|.|.+ +.+.|++++. ..
T Consensus 148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SK 225 (765)
T ss_pred cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-Cc
Confidence 7799999988899999999999999999211 111111111111 12334788887 7777777765 56
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+.++|+++...............|..+.-+|.....++.-.+ ..+..+++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 899999875331111124455678899988874444333322 4444444444
No 402
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=1 Score=38.64 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=115.4
Q ss_pred EeEEEEcCCCCCCCCe-EEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEec---CCeEEEEEccccc
Q 020107 69 IFDIKWSPVGGNAGPF-LAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQ 138 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~-l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~ 138 (331)
-..++.++. +.. .+....+..+ +-+..+.... ......++++++++.+.++.. ++.+.+.|..+++
T Consensus 76 p~~i~v~~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCC----CCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 456777877 554 4444444555 6664443321 224567899999988877766 6888888888775
Q ss_pred eeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
. .........+ ..+++.| +++ .+++-..++.|.+.|........ .-...-.-......+.+.| ++..+.+...
T Consensus 152 ~--~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~ 226 (381)
T COG3391 152 V--TATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVAND 226 (381)
T ss_pred E--EEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEec
Confidence 4 3333333334 8899999 555 55555588999999977654332 1000001233456788899 7776555543
Q ss_pred C---CeEEEEEecCCCCCceeeeeecCC-ceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 217 D---EYLRVWDVRSISKPVNETSVCLGG-GVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 217 d---~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
. +.+...|..+.. +......-.. ....+..+|++....++....+.+.+.+...
T Consensus 227 ~~~~~~v~~id~~~~~--v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 227 GSGSNNVLKIDTATGN--VTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred cCCCceEEEEeCCCce--EEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 3 588888887742 2221112222 4667899999854444445546655555444
No 403
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.83 E-value=0.87 Score=37.66 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=83.1
Q ss_pred CeEEEEcCCccE-EEecC-CCccc----------CccEE-EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-
Q 020107 83 PFLAQADADGGL-LRDIT-GEKIS----------SSMCL-CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH- 148 (331)
Q Consensus 83 ~~l~~~~~dg~i-iw~~~-~~~~~----------~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 148 (331)
.-+.+-+.||.+ ...+. .++.. ..++. .-++...+..++--+.+|.|+-.|+.....+....+..-
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 367788888888 33332 11111 11111 112333444555577889999988887654444443211
Q ss_pred ---------cceeEEEeeCCCCCcEEEEEc-------CCC--eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 149 ---------EFELWATSFDVHQPHMVYTGS-------DDC--KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 149 ---------~~~v~~~~~~~~~~~~l~~~~-------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
.+.-.-+++++..+.+++.-. .|+ .|-++|+.+++.+..+.. ..++.+|..+.++..+
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPL 303 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-E
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcE
Confidence 122345677763434433322 122 567778888887777776 4567899999855556
Q ss_pred EEEE-ecCCeEEEEEecCCCCCcee
Q 020107 211 LLTG-SYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 211 l~~~-~~d~~i~iwd~~~~~~~~~~ 234 (331)
|++. ..++.+.+||..++ +.+..
T Consensus 304 L~~~~~~~~~l~v~D~~tG-k~~~~ 327 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATG-KLVRS 327 (342)
T ss_dssp EEEEETTTTEEEEEETTT---EEEE
T ss_pred EEEEcCCCCeEEEEeCcCC-cEEee
Confidence 6554 46899999999996 44444
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.82 E-value=0.042 Score=29.80 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.7
Q ss_pred cceEEEEEecCCC--CEEEEEecCCeEEEEEecC
Q 020107 196 MGVCCIASIPSDS--NTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 196 ~~v~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~ 227 (331)
+.|+++.|+|..+ .+|+..-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998444 6888888889999999995
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.85 Score=36.48 Aligned_cols=222 Identities=16% Similarity=0.125 Sum_probs=116.0
Q ss_pred eEEEEcCCccEEEecCCCcccCccEEEEEEcCCCCe-EEEEecCCe-EEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSATS-ITVGLSDGS-VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 84 ~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
..++.+.+|+++..+.- ......+.|+|..+. ++.+-.-|+ ..++|....+......-.....-.-.-.|+| +
T Consensus 50 g~a~~~eaGk~v~~~~l----paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-d 124 (366)
T COG3490 50 GAATLSEAGKIVFATAL----PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-D 124 (366)
T ss_pred eEEEEccCCceeeeeec----ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-C
Confidence 46667777777433322 122346777776544 555555443 4678877654321111111111111236888 7
Q ss_pred CcEEEEEcCC-----CeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE--------EecC
Q 020107 162 PHMVYTGSDD-----CKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW--------DVRS 227 (331)
Q Consensus 162 ~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw--------d~~~ 227 (331)
+.+|++.-.| |.|-|||.+.+- .+-++. .|.-....+.+.+ |+..++... |-|..- ++.+
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~---t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNlds 198 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS---THGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDS 198 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccc---cCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhh
Confidence 8888776543 789999998542 133344 3888888999999 898887763 334333 2222
Q ss_pred CCCCceeeee---------------ecCCceEEEEECCCCCCeEEEEEecCcE-----EEEEEcCcccceeEEeec----
Q 020107 228 ISKPVNETSV---------------CLGGGVWRIKHHPFIPGLVLAACMHNGF-----AVVKVGGEKAEVLETYAK---- 283 (331)
Q Consensus 228 ~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---- 283 (331)
+ +|...++. .+.-.|..+...++ +.+..+|...+- -++-.... ++.+..+.-
T Consensus 199 M-ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~ 274 (366)
T COG3490 199 M-EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQ 274 (366)
T ss_pred c-CccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHH
Confidence 2 22111111 12234666777777 555555543220 01111111 222222221
Q ss_pred ---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 284 ---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 284 ---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
-...|-+++.+.+. .+++..+-..+...+||.+++..
T Consensus 275 ~~~~anYigsiA~n~~~---------glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 275 TAAFANYIGSIAANRRD---------GLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred HHHHHhhhhheeecccC---------CeEEEecCCCCeEEEEEcCCCcE
Confidence 12245567776655 34444442667888999988754
No 406
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.63 E-value=0.72 Score=35.30 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=84.8
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC---C---eEEEE---EccCC--Cce-
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD---C---KFSGW---DIRES--PFK- 185 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~~~--~~~- 185 (331)
+.|+.+...+.|.+|++.+...++...+..- +.|..+.++. .++++++--.+ . .+|+| +.... +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 5565657778899999996666667777643 6789999997 78999886432 2 55654 22210 111
Q ss_pred --------------------eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCc---eee-------
Q 020107 186 --------------------LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV---NET------- 235 (331)
Q Consensus 186 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~------- 235 (331)
..+.. + -..++.+++..|..|++++.+ ++.+.+|.+....... ...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiEl-P-l~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIEL-P-LSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred EEEcccccccCCCCccccceEEEEe-c-CCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhh
Confidence 11111 1 245678899999777766644 5779999886532101 110
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
....+-.+..+++..+ +++..++..++++++
T Consensus 183 ~~~~~~~p~~v~ic~~----yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAICEG----YIAVMSDLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEEEee----EEEEecCCEEEEEEE
Confidence 0111223566676653 445556666666665
No 407
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.63 E-value=1.6 Score=39.25 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=37.0
Q ss_pred eEEEEEccCCCceeeeecccCCCc-------ceEEEEEecCCCC---EEEEEecCCeEEEEEecCCC
Q 020107 173 KFSGWDIRESPFKLAFQNSKIHKM-------GVCCIASIPSDSN---TLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 173 ~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~ 229 (331)
.|.-.|+++++..-.++..+ |.. ...-+.+.. ++. .++.+.++|.+.+.|.++++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred eEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCc
Confidence 67778999998877777622 321 111222222 454 78899999999999999864
No 408
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.52 E-value=0.0046 Score=52.33 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=96.8
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEE-EecCCeEEEEEccccceee
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITV-GLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~ 141 (331)
.-....|-|. +.-++.++.+-.+ .+|-..... .+.....++|..++..+++ +-..+.+.+||+.+..-+.
T Consensus 36 ~pi~~~w~~e----~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPE----GHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecC----CCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3445667887 5557777777776 565544332 2455667889888877544 4558999999998743211
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEE
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLR 221 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 221 (331)
+ .+.+ ...-.-+.|++ ....++.+...|.+.|++..+.+....... |...++++++.+ .++.+.++.|..+.
T Consensus 112 L-E~gg-~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~l--Ed~vil~dcd~~L~ 183 (615)
T KOG2247|consen 112 L-ESGG-TSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTL--EDYVILCDCDNTLS 183 (615)
T ss_pred H-hccC-cchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecc--cceeeecCcHHHHH
Confidence 1 1211 11122278887 777888888999999999988765555544 889999999998 55677777776554
Q ss_pred EE
Q 020107 222 VW 223 (331)
Q Consensus 222 iw 223 (331)
+-
T Consensus 184 v~ 185 (615)
T KOG2247|consen 184 VT 185 (615)
T ss_pred Hh
Confidence 43
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=95.48 E-value=1.6 Score=38.82 Aligned_cols=187 Identities=4% Similarity=-0.113 Sum_probs=89.0
Q ss_pred CCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--CeEEEEEccCCCceeee
Q 020107 116 SATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--CKFSGWDIRESPFKLAF 188 (331)
Q Consensus 116 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~ 188 (331)
++..+++|+.+ ..+..||..++++..+..+.........+. .++.+.+.|+.+ ..+..||..+.+-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~---~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP---ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE---ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 34445666643 256778888876655444432222222222 256777777754 35778887655322111
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCCCCceeeeeecCCc--eEEEEECCCCCCeEEEEEecC
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSISKPVNETSVCLGGG--VWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~ 263 (331)
.. +........+.. ++.+.+.||.++ .+..||.++. .... ......+ -.+++- -+ +.+.+.|+
T Consensus 348 ~l-~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~--~W~~-~~~m~~~r~~~~~~~-~~--~~IYv~GG-- 415 (480)
T PHA02790 348 SL-LKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD--QWQF-GPSTYYPHYKSCALV-FG--RRLFLVGR-- 415 (480)
T ss_pred CC-CCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC--EEEe-CCCCCCccccceEEE-EC--CEEEEECC--
Confidence 11 101111222222 677888887654 4667887652 1111 0000001 011221 12 33444432
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCCCccc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPESDCL 329 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~~~~~ 329 (331)
...+++........+..+....... +++.. ++ ++.+.|| .+ ..+..||++++..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~-~~---------~IYviGG-~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNP-ELIIV-DN---------KLLLIGG-FYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCcccc-EEEEE-CC---------EEEEECC-cCCCcccceEEEEECCCCeE
Confidence 2346666544444443332212222 23332 33 5788887 54 4688999887754
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.12 E-value=1.8 Score=36.65 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=91.0
Q ss_pred EEcCCCCCCCCeEEEEcCCccE---EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee
Q 020107 73 KWSPVGGNAGPFLAQADADGGL---LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ 143 (331)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~dg~i---iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 143 (331)
+|.+++ .++|..+..+|.- +-++.+.+.. ........++|+++.++-......|+-.|+++.+...+.
T Consensus 42 ~ft~dG---~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDG---RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS----EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCC---CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 466662 3566666667766 5566655431 111224556788888766656678888999987654555
Q ss_pred eeecccceeEEEeeCC-CCCcEEEEEc----------------------CCCeEEEEEccCCCceeeeecccCCCcceEE
Q 020107 144 QWKAHEFELWATSFDV-HQPHMVYTGS----------------------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCC 200 (331)
Q Consensus 144 ~~~~~~~~v~~~~~~~-~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 200 (331)
.+. ...+-...|.. .+...++-.- -...|.-.|+.+++...++.. ...+..
T Consensus 119 ~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~----~~wlgH 192 (386)
T PF14583_consen 119 EVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED----TDWLGH 192 (386)
T ss_dssp E----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE----SS-EEE
T ss_pred ECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec----CccccC
Confidence 443 33343345532 2334332221 124566678888776555554 778899
Q ss_pred EEEecCCCCEEEEEecC---C-eEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 201 IASIPSDSNTLLTGSYD---E-YLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.|+|.++.+|+-|-+. . .-|||-++.......... ......+..=-|.|+|..++..+...++
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCC
Confidence 99999778777777542 2 136777765332222111 1223345556788988655555443333
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.09 E-value=2 Score=37.01 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=61.6
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc------c-------cCccEEEEEEcCCCCeEEEEecCCeE
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK------I-------SSSMCLCLEWNPSATSITVGLSDGSV 129 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~------~-------~~~~v~~~~~~~~~~~l~~~~~dg~i 129 (331)
......+.++.|.++ +.+++++ ..|.+++....++ . ....+.++.|.+++..+++ +..|.+
T Consensus 277 ~~~~~~l~~v~~~~d----g~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v 350 (398)
T PLN00033 277 RASARRIQNMGWRAD----GGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGIL 350 (398)
T ss_pred CCCccceeeeeEcCC----CCEEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcE
Confidence 334556899999988 6666655 5676744433321 1 1234788999877665554 566877
Q ss_pred EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
....-....++....-..-....+.+.|.+ +++.++ .+.+|.|.-|
T Consensus 351 ~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 351 LRSTDGGKSWKRDKGADNIAANLYSVKFFD-DKKGFV-LGNDGVLLRY 396 (398)
T ss_pred EEeCCCCcceeEccccCCCCcceeEEEEcC-CCceEE-EeCCcEEEEe
Confidence 665433333322221122245678999875 444444 4557877554
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=95.05 E-value=1.8 Score=36.38 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=82.3
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEE-EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSG-WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
...+..+.+.| ++.+++++. .|.+.. +|-. ++.-.... ..-...++++.+.| ++..++++ ..|.+++=....
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~--~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPG-QTAWTPHQ--RNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCCC-CCeEEEee--CCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC
Confidence 45688899987 655555544 565443 2211 12111111 12456789999998 77776665 567664322222
Q ss_pred CCCCceeeeee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCccc
Q 020107 228 ISKPVNETSVC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 228 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~ 301 (331)
+ ........+ ....+..+.+.|+ +.+++++..+. ++.-.+. ++.-.... .-....+.+.|..++
T Consensus 245 G-~sW~~~~~~~~~~~~~l~~v~~~~~--~~~~~~G~~G~--v~~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~---- 314 (334)
T PRK13684 245 L-ESWSKPIIPEITNGYGYLDLAYRTP--GEIWAGGGNGT--LLVSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPE---- 314 (334)
T ss_pred C-CccccccCCccccccceeeEEEcCC--CCEEEEcCCCe--EEEeCCC-CCCCeECCcCCCCCcceEEEEEeCCC----
Confidence 2 211110011 2245788999987 44666666665 3333332 33333322 222357778877665
Q ss_pred ccccCcEEEEeecCCCeEEEEcCC
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+.++.| ..|.|--|+-.
T Consensus 315 -----~~~~~G--~~G~il~~~~~ 331 (334)
T PRK13684 315 -----KGFVLG--QRGVLLRYVGS 331 (334)
T ss_pred -----ceEEEC--CCceEEEecCC
Confidence 466655 58999888754
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=95.01 E-value=2.4 Score=37.69 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCCeEEEEecC---CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc
Q 020107 116 SATSITVGLSD---GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 116 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 192 (331)
+++..+.|+.+ ..+..||.+++++.....+.........+++ ++.+.+.|+ .+.+||.++.+-...-.. +
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m-~ 434 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDP-I 434 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCC-C
Confidence 56666676654 3477899988777554433322222222222 456666663 577899876643221111 1
Q ss_pred CCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecC
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRS 227 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~ 227 (331)
...... +++.. ++.+.+.||.+ ..+..||..+
T Consensus 435 ~~r~~~-~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 435 YPRDNP-ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcccc-EEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 112222 22222 57788888764 2455666554
No 414
>PRK10115 protease 2; Provisional
Probab=94.96 E-value=3.2 Score=38.78 Aligned_cols=237 Identities=9% Similarity=-0.040 Sum_probs=113.2
Q ss_pred cEeEEEEcCCCCCCCCeEEEEc-CCccE-----EEecCCCcccCcc----EEEEEEcCCCCeEEEEecC------CeEEE
Q 020107 68 GIFDIKWSPVGGNAGPFLAQAD-ADGGL-----LRDITGEKISSSM----CLCLEWNPSATSITVGLSD------GSVSI 131 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~-~dg~i-----iw~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d------g~i~i 131 (331)
.+..+.|+|+ +++|+.+. .+|.- +-++.++...... -..++|.++++.|+....+ ..|..
T Consensus 128 ~l~~~~~Spd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4778899999 77776653 34443 6667655521111 2468999999877665442 36777
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccC--CCceeeeecccCCCcceEEEEEecC
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRE--SPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
+++.++..+....+........-..+.+.++.+++..+ .++.+.+++... +.....+.. .......+. +.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~-~~- 278 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR---RKDHEYSLD-HY- 278 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC---CCCCEEEEE-eC-
Confidence 88877632222333322222332223333555444333 345788888533 322222222 122222222 32
Q ss_pred CCCEEEEEec--CC--eEEEEEecCCCCCceeeeeec-C-CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107 207 DSNTLLTGSY--DE--YLRVWDVRSISKPVNETSVCL-G-GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET 280 (331)
Q Consensus 207 ~~~~l~~~~~--d~--~i~iwd~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
. ..|..-+. .. .|...++... ..... +..+ . ..+..+.+..+ .++++...++..+++.+... ...+..
T Consensus 279 ~-~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~-l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~~~-~~~~~~ 352 (686)
T PRK10115 279 Q-HRFYLRSNRHGKNFGLYRTRVRDE-QQWEE-LIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQINRK-TREVIG 352 (686)
T ss_pred C-CEEEEEEcCCCCCceEEEecCCCc-ccCeE-EECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEcCC-CCceEE
Confidence 2 33333322 12 3433444421 22223 2344 3 36888888743 44444444444444444332 233333
Q ss_pred ee-cCCcceeeeeec--CCCCcccccccCcEEEEeec--CCCeEEEEcCCCc
Q 020107 281 YA-KHGSLAYGADWQ--RGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESD 327 (331)
Q Consensus 281 ~~-~h~~~v~~~~~~--~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~ 327 (331)
+. .....+..+.++ ++.. .++++.++ .-+.+..+|+.++
T Consensus 353 l~~~~~~~~~~~~~~~~~~~~--------~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 353 IAFDDPAYVTWIAYNPEPETS--------RLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred ecCCCCceEeeecccCCCCCc--------eEEEEEecCCCCCEEEEEECCCC
Confidence 33 222223333344 2221 45555442 3467788887665
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=1.6 Score=35.12 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=98.9
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
..+..+.++ +++...+..+.-+++.|+.+.....+..+..-.+-..++.. .+++...+.-|.-+.+.|+.+++..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence 334455564 46788888888899999988653222222222244455554 4577777775666778999877643
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
...-........-..++. .+++-..+..|+-+.+.|+.+...|...-.......+.++..+++ ..+++. .+.++
T Consensus 162 ~lagrya~~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vv-y~egv 235 (370)
T COG5276 162 QLAGRYALPGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVV-YDEGV 235 (370)
T ss_pred eeeeeeccCCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEE-cccce
Confidence 322211112333345666 467888888999999999998877766533444557889988887 444444 45566
Q ss_pred EEEEEcCc
Q 020107 266 AVVKVGGE 273 (331)
Q Consensus 266 ~~~~~~~~ 273 (331)
.+.+....
T Consensus 236 livd~s~~ 243 (370)
T COG5276 236 LIVDVSGP 243 (370)
T ss_pred EEEecCCC
Confidence 66666554
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.77 E-value=2 Score=36.64 Aligned_cols=138 Identities=11% Similarity=-0.026 Sum_probs=69.2
Q ss_pred eeEEEeeCCCCCcEEEEEc-----------CCC-eEEEEEccCC--Cc--eeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 151 ELWATSFDVHQPHMVYTGS-----------DDC-KFSGWDIRES--PF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
....++|.+ +++++++-. ..+ .|.+++-..+ +. ...+.. .-.....+++.+ ++ +++ +
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l~~p~Gi~~~~-~G-lyV-~ 87 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---ELSMVTGLAVAV-GG-VYV-A 87 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CCCCccceeEec-CC-EEE-e
Confidence 356788887 667666542 223 6766665432 21 122322 234568899988 77 444 4
Q ss_pred ecCCeEEEEEecCCCC---Cceeeeee-------cCCceEEEEECCCCCCeEEEEEecCc-----------------EEE
Q 020107 215 SYDEYLRVWDVRSISK---PVNETSVC-------LGGGVWRIKHHPFIPGLVLAACMHNG-----------------FAV 267 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~---~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 267 (331)
......++.|.....+ ....+... +......++|.|++ .++++.+.... -.+
T Consensus 88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence 4444333445432111 11111111 12347789999996 55555553211 125
Q ss_pred EEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 268 VKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 268 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+++.... ..+..+........+++|++++
T Consensus 167 ~r~~pdg-~~~e~~a~G~rnp~Gl~~d~~G 195 (367)
T TIGR02604 167 FRYNPDG-GKLRVVAHGFQNPYGHSVDSWG 195 (367)
T ss_pred EEEecCC-CeEEEEecCcCCCccceECCCC
Confidence 5554432 2223333223345689999987
No 417
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.75 E-value=2 Score=35.48 Aligned_cols=204 Identities=11% Similarity=0.046 Sum_probs=105.3
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-----------ccCccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK-----------ISSSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~-----------~~~~~v~~ 110 (331)
..+.|.-|+..++. ...+ . +.+.+.++..-.. +..|+++. .|..+++..... ......+.
T Consensus 45 ~~~~i~r~~~~~g~--~~~~-~-~p~~~~~~~~~d~----~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 45 LGGRIHRLDPETGK--KRVF-P-SPGGFSSGALIDA----GGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CCCeEEEecCCcCc--eEEE-E-CCCCcccceeecC----CCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 57788888877553 2222 1 2233344443333 33444443 333323322111 11244567
Q ss_pred EEEcCCCCeEEEEec-----------CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEc
Q 020107 111 LEWNPSATSITVGLS-----------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDI 179 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~ 179 (331)
+...|+|.+-+.... -|.|+.++. .+.. ++.+..+-..-+.++|+|++..++++=+..+.|.-|++
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~--~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV--VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE--EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 778888876554433 244555554 2322 33344445566789999943344444455588888877
Q ss_pred cC--CCc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCCCceeeeeecCCceEEEEECC-CCC
Q 020107 180 RE--SPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIP 253 (331)
Q Consensus 180 ~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 253 (331)
.. +.. ...+.......+..-.++... ++++.+++..+| .|..|+.. + +.+.....+. ..+++++|-- +.+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~-~~~t~~~FgG~~~~ 268 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPV-KRPTNPAFGGPDLN 268 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-C-cEEEEEECCC-CCCccceEeCCCcC
Confidence 62 111 111111111345556667776 777775554444 89999988 3 5555522232 6677777765 332
Q ss_pred CeEEEEEe
Q 020107 254 GLVLAACM 261 (331)
Q Consensus 254 ~~~~~~~~ 261 (331)
.+++++..
T Consensus 269 ~L~iTs~~ 276 (307)
T COG3386 269 TLYITSAR 276 (307)
T ss_pred EEEEEecC
Confidence 34444433
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.66 E-value=2.7 Score=36.55 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=116.0
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc-
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG- 92 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg- 92 (331)
.+.....+|++++||.+--. +++..-.++++|+.+++ .+...... ..-..+.|.++ ++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~-----~G~e~~~l~v~Dl~tg~-~l~d~i~~--~~~~~~~W~~d----~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSD-----GGSEWYTLRVFDLETGK-FLPDGIEN--PKFSSVSWSDD----GKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEE-----TTSSEEEEEEEETTTTE-EEEEEEEE--EESEEEEECTT----SSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecC-----CCCceEEEEEEECCCCc-CcCCcccc--cccceEEEeCC----CCEEEEEEeCcc
Confidence 34344445666899888521 11235569999999885 22222121 12223999999 66655544332
Q ss_pred -c------E----EEecCCCccc---------Ccc-EEEEEEcCCCCeEEEEec---C-CeEEEEEcccc--ceeeeeee
Q 020107 93 -G------L----LRDITGEKIS---------SSM-CLCLEWNPSATSITVGLS---D-GSVSIVSVVES--QLEVLQQW 145 (331)
Q Consensus 93 -~------i----iw~~~~~~~~---------~~~-v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~--~~~~~~~~ 145 (331)
. . .|.+.+.... ... ...+..++++++|+.... + ..+.+.++..+ .......+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 2 2 6666554321 222 567889999999765443 3 45788888764 01112333
Q ss_pred eccccee-EEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc---eeeeecccCCCc--ceEEEEEecCCCCEEEEEec
Q 020107 146 KAHEFEL-WATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF---KLAFQNSKIHKM--GVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 146 ~~~~~~v-~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~ 216 (331)
......+ ..+... ++.+++... ..+.|...++..... ...+.. +.. .+..+... ...+++.--.
T Consensus 273 ~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~--~~~Lvl~~~~ 345 (414)
T PF02897_consen 273 SPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF--KDYLVLSYRE 345 (414)
T ss_dssp EESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEE
T ss_pred eCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE--CCEEEEEEEE
Confidence 3233333 333332 444444443 346777788887663 112222 444 45555543 3455555555
Q ss_pred CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 217 DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 217 d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
++ .|+++|+.. ..........-.+.|..+...++.+.+++..++
T Consensus 346 ~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 346 NGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred CCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 65 477788872 122333223344556666666665455555443
No 419
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=1.8 Score=34.65 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=107.1
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCC-cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNG-SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g-~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
..+......|.++|..| .-++.+- +-| ...++|......+..........---.=.|||+ +.+
T Consensus 64 ~~lpaR~Hgi~~~p~~~--ravafAR----------rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~d----G~~ 127 (366)
T COG3490 64 TALPARGHGIAFHPALP--RAVAFAR----------RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPD----GRL 127 (366)
T ss_pred eecccccCCeecCCCCc--ceEEEEe----------cCCceEEEECCCCCcCcEEEecccCceeecccccCCC----CcE
Confidence 34445566788999887 6777775 344 467788887763322221110001112348999 888
Q ss_pred EEEEcCC-----ccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecC-------C-----------eEEEEE
Q 020107 85 LAQADAD-----GGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSD-------G-----------SVSIVS 133 (331)
Q Consensus 85 l~~~~~d-----g~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d-------g-----------~i~i~d 133 (331)
|...-.| |.| +++....-. +.-....+.|.+||+.++.+... | ++.+.|
T Consensus 128 LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred EEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 8876544 333 888764322 22334578899999998876530 1 233333
Q ss_pred ccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeeccc----CCCcceEEEE
Q 020107 134 VVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSK----IHKMGVCCIA 202 (331)
Q Consensus 134 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~ 202 (331)
..++.+....++. .+...+..++..+ ++..++.+-..| --.+=-.+.++....+...+ .-...|-+|+
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 3333321122222 2334456666654 444433332111 11111112222222222210 0134577888
Q ss_pred EecCCCCEEEEEecCCeEEEEEecCC
Q 020107 203 SIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 203 ~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.+..++-..+|.-..+...+||..++
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCCC
Confidence 88744555555556678889999996
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=1.6 Score=37.45 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=84.5
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeee-ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-ccCC
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQW-KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-SKIH 194 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 194 (331)
.+..+.+...|.+.-|..........-.+ ....++|.++.|++ +.+.++.--.+..|.+++....+....... -+..
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 33333334445556666554221111122 22456899999999 889999999999999999854332222221 1223
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
...|....|.. ..-+|.....| +-+|-....++.+.. ...|...|.=..|+|+-.-.+++++
T Consensus 112 ~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekrslRl-Vks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 112 NANILGFCWTS--STEIAFITDQG-IEFYQVLPEKRSLRL-VKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred cceeEEEEEec--CeeEEEEecCC-eEEEEEchhhhhhhh-hhhcccCccEEEEccccceEeeecc
Confidence 45588889985 45566665544 777777665444433 4567778888888888644555555
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=1.1 Score=38.44 Aligned_cols=135 Identities=11% Similarity=0.002 Sum_probs=84.8
Q ss_pred EEEeeCCCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC
Q 020107 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 230 (331)
+.+-|. +.+..+.+...|.+.-|-..... ....+.. ...++|.++.|++ |.+.+|+--.|..|.+++.... +
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d-~ 99 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPD-N 99 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeee--cCCCceeEEEecc-CcceEEEEecCceEEEEecCCC-c
Confidence 445554 23333333345555666555332 2223322 2466999999999 9999999999999999998542 2
Q ss_pred Cceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 231 PVNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 231 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+..+. ....+..|....|+... -+ +--.+.++.++.+... .+.++..+.|.-.|.=..|.++.
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s~--e~-A~i~~~G~e~y~v~pe-krslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSST--EI-AFITDQGIEFYQVLPE-KRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecCe--eE-EEEecCCeEEEEEchh-hhhhhhhhhcccCccEEEEcccc
Confidence 22221 12334458889998863 23 3334567778888765 45555666777778778888876
No 422
>PRK10115 protease 2; Provisional
Probab=94.56 E-value=4 Score=38.12 Aligned_cols=197 Identities=8% Similarity=0.000 Sum_probs=100.2
Q ss_pred ccEEEEEEcCCCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEE
Q 020107 106 SMCLCLEWNPSATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFS 175 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 175 (331)
-.+..+.|+|++++|+.+.. ...|++.|+.++... ...+.. . -..++|.+++..++++...+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 34567889999998877644 235888898877521 112221 1 14589998443444444322 3677
Q ss_pred EEEccCC--CceeeeecccCCCcceE-EEEEecCCCCEEEEEec---CCeEEEEEecCCC-CCceeeeeecC-CceEEEE
Q 020107 176 GWDIRES--PFKLAFQNSKIHKMGVC-CIASIPSDSNTLLTGSY---DEYLRVWDVRSIS-KPVNETSVCLG-GGVWRIK 247 (331)
Q Consensus 176 i~d~~~~--~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~-~~~~~~~~~~~-~~v~~~~ 247 (331)
.+++.++ +....+.. ...... .+..+. ++.+++..+. ++.+.+++..... .+... ..+. +....+.
T Consensus 203 ~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~ 276 (686)
T PRK10115 203 RHTIGTPASQDELVYEE---KDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF--LPRRKDHEYSLD 276 (686)
T ss_pred EEECCCChhHCeEEEee---CCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE--EECCCCCEEEEE
Confidence 8888877 33344443 122222 223333 6666555443 3568888854321 22222 2222 2222332
Q ss_pred ECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecC-C-cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 248 HHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKH-G-SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
+... .+++.+.. ....+++.+.-........+-.+ . ..+.++.+..+ .++++.. .++.-+++-+
T Consensus 277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~-~~g~~~l~~~ 343 (686)
T PRK10115 277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEER-QRGLTSLRQI 343 (686)
T ss_pred -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEE-eCCEEEEEEE
Confidence 2221 34443322 23344554433211222333344 2 36778888744 4677776 7777666544
Q ss_pred C
Q 020107 325 E 325 (331)
Q Consensus 325 ~ 325 (331)
+
T Consensus 344 ~ 344 (686)
T PRK10115 344 N 344 (686)
T ss_pred c
Confidence 3
No 423
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.48 E-value=1.1 Score=31.40 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=68.0
Q ss_pred EEEcCCCCeEEEEecCCeEEEEEccccc------eeeeeeeecccceeEEEeeCC---C-CCcEEEEEcCCCeEEEEEcc
Q 020107 111 LEWNPSATSITVGLSDGSVSIVSVVESQ------LEVLQQWKAHEFELWATSFDV---H-QPHMVYTGSDDCKFSGWDIR 180 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~v~~~~~~~---~-~~~~l~~~~~dg~i~i~d~~ 180 (331)
-.|....+.|++++.-|.|.|++..... ...+..+. -...|++++-.+ . ....|+.|+ ...|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4566666788888899999999876431 12233333 234566665443 2 345677766 5678899999
Q ss_pred CCCceeeeecccCCCcceEEEEEecC---CCCEEEEEecCCeEEEEEecC
Q 020107 181 ESPFKLAFQNSKIHKMGVCCIASIPS---DSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~iwd~~~ 227 (331)
....+.... -.+.|+++.+-.. ...++++|+ +..|.-||...
T Consensus 82 ~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred cCchhhhhh----CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 776443333 3577888877431 234555554 56677777654
No 424
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.42 E-value=0.0082 Score=50.88 Aligned_cols=134 Identities=8% Similarity=0.080 Sum_probs=94.6
Q ss_pred EEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeee
Q 020107 109 LCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 188 (331)
....|-+.+..++.++.+..+..||-.... ..... .......++|....+..++.+-..+.+.+||+.+.. .+.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce---ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHH
Confidence 456788888889999999999999965432 22222 344566788887444566677788999999998654 2233
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
.....|.... +.|++ ....++.+-..|.+.+++....++.+.. -.|..+++++++.+.+
T Consensus 113 E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVM--GKHQRRGTQIAVTLED 171 (615)
T ss_pred hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhhhh--cccccceeEEEecccc
Confidence 3212233333 78888 7788888889999999999886444443 3488899999999873
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.41 E-value=4.1 Score=37.58 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=67.4
Q ss_pred CCCEEEEEecCCeEEEEEecCCC-------------------CCceeeeeecCCceEEEEEC--CCCCCeEEEEEecCcE
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSIS-------------------KPVNETSVCLGGGVWRIKHH--PFIPGLVLAACMHNGF 265 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~ 265 (331)
+...|+.+..||.|.+|..+..- +|.. .......++.++++ ... .+++++.....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f--~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF--HLRVGASAWGLDIHDYKKS-RLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCe--EeecCCceeEEEEEecCcc-eEEEEecCCceE
Confidence 45688999999999999763210 1222 24456688999998 442 444444445556
Q ss_pred EEEEEcCcccceeE-EeecCCcceeeeeecCCCCcccccccC-cEEEEeecCCCeEEEEcC
Q 020107 266 AVVKVGGEKAEVLE-TYAKHGSLAYGADWQRGRSSLEGKRKN-SLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~~~~d~~i~iW~~ 324 (331)
.++-......+... .-..|...|-+++|.++.. ++.+ ..|++++ -.|.+-+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~----d~~G~v~v~a~d-I~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL----DPNGHVKVVATD-ISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCC----CCccceEEEEEe-ccCcEEEEEE
Confidence 66655442111111 1113566889999998762 1112 2777788 8999988877
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.20 E-value=4.9 Score=37.59 Aligned_cols=66 Identities=23% Similarity=0.383 Sum_probs=50.2
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccEE------EecCC----Ccc-----------------cCccEEEEEEcCC---C
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGLL------RDITG----EKI-----------------SSSMCLCLEWNPS---A 117 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~ii------w~~~~----~~~-----------------~~~~v~~~~~~~~---~ 117 (331)
.|..|..+|+ +++|+..+..|..+ |-... ++. +...|..+.|+|. +
T Consensus 86 ~v~~i~~n~~----g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 86 EVHQISLNPT----GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eEEEEEECCC----CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 5889999999 99999999888772 32111 110 2456788999996 4
Q ss_pred CeEEEEecCCeEEEEEcccc
Q 020107 118 TSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~ 137 (331)
..|++-..|+++|+||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 78999999999999999763
No 427
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=2.5 Score=34.06 Aligned_cols=163 Identities=9% Similarity=0.064 Sum_probs=96.4
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
..+.++.|+|+.+.|++......-.++=..+|+......+.+ -.....+.+.. ++.+.++--+++.+.++.+......
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccE
Confidence 448899999999998888877776666555665522222332 22345667764 6667777678888888877654321
Q ss_pred e-----eeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-ee-------cCCceEEEEECC
Q 020107 186 L-----AFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VC-------LGGGVWRIKHHP 250 (331)
Q Consensus 186 ~-----~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~-------~~~~v~~~~~~~ 250 (331)
. .+.. ........-.++|.| ....|...-+-.-+.||........+.... .. .-..|..+.|++
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 1 1211 111256778999999 666666666667788887765332222100 01 123477889998
Q ss_pred CCCCeEEEEEecCcEEEEEEcCc
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
..+.++ +-+.+.+ .+..+...
T Consensus 243 ~~~~LL-VLS~ESr-~l~Evd~~ 263 (316)
T COG3204 243 ITNSLL-VLSDESR-RLLEVDLS 263 (316)
T ss_pred CCCcEE-EEecCCc-eEEEEecC
Confidence 763444 4444333 24444443
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.11 E-value=4.1 Score=38.08 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=55.2
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC----------CCc-e--eeeec-----ccCCCcceEEEEEecC--CC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE----------SPF-K--LAFQN-----SKIHKMGVCCIASIPS--DS 208 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~--~~~~~-----~~~~~~~v~~~~~~~~--~~ 208 (331)
...|..+..+| ++.+++..+..|.. |..+.. ++. + ..+.. ...+...|..+.|+|. ++
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 35788999998 77888877765544 444321 111 0 01100 1224567999999994 25
Q ss_pred CEEEEEecCCeEEEEEecCCCCCcee
Q 020107 209 NTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
..|++-..|+++|+||+.....|...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEE
Confidence 78889999999999999876555444
No 429
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.04 E-value=4.4 Score=36.51 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=60.0
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeeeecccceeE----------EEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELW----------ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
+..+++++.++.|.-+|..+++..-....... ..+. .+++. +..++.++.|+.|.-.|.++++.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEe
Confidence 45677778888888889888764221111111 1111 11221 2457778889999999999998765
Q ss_pred eeecccCCC--cceEE-EEEecCCCCEEEEEe------cCCeEEEEEecCCCC
Q 020107 187 AFQNSKIHK--MGVCC-IASIPSDSNTLLTGS------YDEYLRVWDVRSISK 230 (331)
Q Consensus 187 ~~~~~~~~~--~~v~~-~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~ 230 (331)
..... .+. ..+.+ -.+. ++ .++++. .+|.|.-+|.++++.
T Consensus 145 ~~~~~-~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 145 SKKNG-DYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ecccc-cccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 55431 111 11111 1111 33 444443 268899999988643
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.79 E-value=3.9 Score=34.97 Aligned_cols=104 Identities=8% Similarity=-0.013 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCeEEEEe-----------cCC-eEEEEEccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCe
Q 020107 108 CLCLEWNPSATSITVGL-----------SDG-SVSIVSVVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCK 173 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 173 (331)
...|+|.++|+.+++-. ..+ .|.+++-.. ++......+.........+++.+ ++ +++ +.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCeE
Confidence 44667777777655532 223 676665432 33322334433334567888886 55 444 444443
Q ss_pred EEEEEccCC-----CceeeeecccC----CCcceEEEEEecCCCCEEEEEe
Q 020107 174 FSGWDIRES-----PFKLAFQNSKI----HKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 174 i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
.++.|.... +....+..... +......+.|.| ++.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence 344455321 22222222221 234578899999 877665544
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.69 E-value=2.6 Score=32.78 Aligned_cols=150 Identities=8% Similarity=-0.053 Sum_probs=84.8
Q ss_pred CccEEEEEEcCCCCeEEEEec---------CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEE
Q 020107 105 SSMCLCLEWNPSATSITVGLS---------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 175 (331)
+.+.+.-..+|+|++.+-... .|.++.|-... +. ..+...-..-+.++|+.+...+.++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-Cc---eeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 344556667889988432222 24455554432 21 112222233457889864445556666777887
Q ss_pred EEE--ccCCCce---eeeeccc--C-CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEE
Q 020107 176 GWD--IRESPFK---LAFQNSK--I-HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIK 247 (331)
Q Consensus 176 i~d--~~~~~~~---~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 247 (331)
-|| ..++... ..+...+ + ..-..-.+++.. .+++.++.-..++|...|..+++ .+.++ .-....|++++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK-~L~ei-klPt~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGK-ILLEI-KLPTPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCc-EEEEE-EcCCCceEEEE
Confidence 777 4444321 1122111 0 011123344555 78888888889999999999974 44442 34477899999
Q ss_pred ECCCCCCeEEEEEe
Q 020107 248 HHPFIPGLVLAACM 261 (331)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (331)
|-...-..+.+++.
T Consensus 261 FgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 261 FGGKNLDILYVTTA 274 (310)
T ss_pred ecCCCccEEEEEeh
Confidence 97643345555544
No 432
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.64 E-value=7 Score=37.44 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=48.7
Q ss_pred eeecCcceeEeeecCCC---CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC-
Q 020107 6 CELDGNADAVEFCPQDS---YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA- 81 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~---~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 81 (331)
.+++.-+.|++..+... .-++++.|+ .++.++++.++...........+-..++.++.+-+.....
T Consensus 579 ~tl~~~vac~ai~~~~~g~krsrfla~a~----------~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~ 648 (1205)
T KOG1898|consen 579 VTLSTDVACLAIGQDPEGEKRSRFLALAS----------VDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGG 648 (1205)
T ss_pred eeeceeehhhccCCCCcchhhcceeeeec----------cccceeEEEecCcceEEEccccccCCCccceEEEEecccCC
Confidence 35667788888877652 225799998 6999999999865422222223334445555554433221
Q ss_pred ----CCeEEEEcCCccE
Q 020107 82 ----GPFLAQADADGGL 94 (331)
Q Consensus 82 ----~~~l~~~~~dg~i 94 (331)
.-+|.+|-.+|.+
T Consensus 649 ~~~~~L~l~~GL~NGvl 665 (1205)
T KOG1898|consen 649 TDVAQLYLLIGLRNGVL 665 (1205)
T ss_pred ccceeEEEEecccccEE
Confidence 1257778888877
No 433
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.11 E-value=1.4 Score=37.71 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=93.7
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc----eeE-EEeeCCCCCcEEEEEcCCCeEEEE-Ec
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF----ELW-ATSFDVHQPHMVYTGSDDCKFSGW-DI 179 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i~i~-d~ 179 (331)
..+..+-..|+++.+.+-+. .++.++++.+...+..+......+ .|+ .+..- ..+..+..++.||.|.-| |.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCceeeeeee
Confidence 34556678899999887766 778889887654322211111111 122 11111 256678888889988766 66
Q ss_pred cCCCceeee---ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107 180 RESPFKLAF---QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 180 ~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
+.... +.+ ..++-....+..+.-.. +.+-+++-...|++.++..... +++.. ...-..+.-+++||.+ -.
T Consensus 299 r~~~~-p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-~~lL~--~~~~~~~~~~~~Sp~~--~~ 371 (733)
T COG4590 299 RRDGQ-PHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-KLLLF--ERAYQAPQLVAMSPNQ--AY 371 (733)
T ss_pred ecCCC-CcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-cceeh--hhhhcCcceeeeCccc--ch
Confidence 64432 211 11111233444443333 5567888888999998876653 33333 3333467788999985 33
Q ss_pred EEEEecCcEEEEEEcCcc
Q 020107 257 LAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~ 274 (331)
+..-..++++++.+.+..
T Consensus 372 Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 372 LLSEDQGKIRLAQLENRN 389 (733)
T ss_pred heeecCCceEEEEecCCC
Confidence 444566788888887753
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.08 E-value=1.2 Score=38.40 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE-Eee-CCCC----------------CcEEEEE
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA-TSF-DVHQ----------------PHMVYTG 168 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~----------------~~~l~~~ 168 (331)
.+.++..+|.+++.++...-|.|.++|+.++.. ++.+++..+.-.. +.. .+.. --+++-+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 467889999999888888889999999998744 5556554322111 000 0000 0134445
Q ss_pred cCCCeEEEEEccCCCceeeeec
Q 020107 169 SDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
-.-|.|.||.++++..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 6788999999998876666654
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.07 E-value=5 Score=34.08 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=91.1
Q ss_pred CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEec
Q 020107 20 QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDI 98 (331)
Q Consensus 20 ~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~ 98 (331)
+.++|+.|+.++- .+....+++.|+.+++ +..+..+.........++|+ .+.++-......+ --++
T Consensus 43 ft~dG~kllF~s~-------~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~----~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 43 FTDDGRKLLFASD-------FDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPD----DRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp B-TTS-EEEEEE--------TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TT----SSEEEEEETTTEEEEEET
T ss_pred cCCCCCEEEEEec-------cCCCcceEEEEcccCE--EEECccCCCCCccceEEecC----CCeEEEEECCCeEEEEEC
Confidence 3455565555541 1124455566666664 55553432233345667787 5565443333344 4455
Q ss_pred CCCcc------cCccEEEEEEc--CCCCeEEEEec-----------------------CCeEEEEEccccceeeeeeeec
Q 020107 99 TGEKI------SSSMCLCLEWN--PSATSITVGLS-----------------------DGSVSIVSVVESQLEVLQQWKA 147 (331)
Q Consensus 99 ~~~~~------~~~~v~~~~~~--~~~~~l~~~~~-----------------------dg~i~i~d~~~~~~~~~~~~~~ 147 (331)
.+.+. +..-+-...|. .++.. ++|.. ...|.-.|+.+++...+ + .
T Consensus 110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v--~-~ 185 (386)
T PF14583_consen 110 DTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV--F-E 185 (386)
T ss_dssp TT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE--E-E
T ss_pred CcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE--E-e
Confidence 55432 12222233443 23333 22221 13455566766654222 2 2
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCC---C-eEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEe-----cC
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDD---C-KFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-----YD 217 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~d 217 (331)
....+..+.|+|.++.+|+-|-+. . .-|||-+++.. ....+.. ......+..=-|.| +|..|.--+ .+
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWVP-DGSTIWYDSYTPGGQD 263 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T-TSS-EEEEEEETTT--
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCcccccccccC-CCCEEEEEeecCCCCc
Confidence 345677899999888888887642 2 23677766432 2222222 11233455556788 666554422 24
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
..|.-+|..+.+.. . +.... ....+--+++ +.++++-
T Consensus 264 ~~i~~~d~~t~~~~--~-~~~~p-~~~H~~ss~D--g~L~vGD 300 (386)
T PF14583_consen 264 FWIAGYDPDTGERR--R-LMEMP-WCSHFMSSPD--GKLFVGD 300 (386)
T ss_dssp EEEEEE-TTT--EE--E-EEEE--SEEEEEE-TT--SSEEEEE
T ss_pred eEEEeeCCCCCCce--E-EEeCC-ceeeeEEcCC--CCEEEec
Confidence 45666777765322 1 12222 3445555677 4555443
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.59 E-value=3.8 Score=31.53 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=82.8
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC------eEEEE---Eec-CCCCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE------YLRVW---DVR-SISKPV 232 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~iw---d~~-~~~~~~ 232 (331)
+.|+.+...+.|.+|++.+..+...... + .-+.|..+.++. .|++++|--.+. .+|+| ... ....++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-S-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-c-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 4444446678899999995443332222 1 357899999999 899999975432 45654 222 111222
Q ss_pred ee---------------------eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc--ce--eEEee----c
Q 020107 233 NE---------------------TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA--EV--LETYA----K 283 (331)
Q Consensus 233 ~~---------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~----~ 283 (331)
.. ...+...++.+++..|-. +.++++ .++.+.+|.+..... +. +.-|. .
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVG-CGNKLVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEE-cCCEEEEEEEEEEEEecccccEEechhhhhh
Confidence 21 123344567888888876 555554 456777877754322 11 11111 1
Q ss_pred C-Cc-ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 284 H-GS-LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 284 h-~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
| .+ ....+++.. .++|..+ +-.+++..+.
T Consensus 184 ~~~~~~p~~v~ic~-----------~yiA~~s--~~ev~Vlkl~ 214 (215)
T PF14761_consen 184 HIDNFKPTQVAICE-----------GYIAVMS--DLEVLVLKLE 214 (215)
T ss_pred eecCceEEEEEEEe-----------eEEEEec--CCEEEEEEEe
Confidence 1 11 244555554 3788776 7788877654
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=6.9 Score=34.43 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=27.4
Q ss_pred eeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCce
Q 020107 151 ELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 151 ~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
.+..++|+|+. ...+..-+.|..+|+||+......
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46678999965 566777778999999999876544
No 438
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.36 E-value=4.9 Score=32.26 Aligned_cols=144 Identities=10% Similarity=-0.064 Sum_probs=82.7
Q ss_pred cEEEEEEcCCCCeEEEEe---cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEE-ccCC
Q 020107 107 MCLCLEWNPSATSITVGL---SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWD-IRES 182 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~ 182 (331)
.+.+.+++++++.++... ....++++...... ...+. ...+..-.|++ ++...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~~--g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVLT--GGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeecc--CCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence 567888899998776655 33455555543221 11122 23677889998 566666666666666663 3333
Q ss_pred Ccee-eeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCC--Cce-----eeeeecCCceEEEEECCC
Q 020107 183 PFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISK--PVN-----ETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 183 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~-----~~~~~~~~~v~~~~~~~~ 251 (331)
.... .... ..-...|.++.++| ++..++.-. .++.|.+=-+..... +.. .........+..+.|.++
T Consensus 99 ~~~~~~v~~-~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 99 TGEPVEVDW-PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred cceeEEecc-cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 3222 1222 11122899999999 888877765 356777765543211 111 111233467899999999
Q ss_pred CCCeEEEE
Q 020107 252 IPGLVLAA 259 (331)
Q Consensus 252 ~~~~~~~~ 259 (331)
. .+++.+
T Consensus 177 ~-~L~V~~ 183 (253)
T PF10647_consen 177 S-TLVVLG 183 (253)
T ss_pred C-EEEEEe
Confidence 5 333333
No 439
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.36 E-value=7.3 Score=34.21 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=85.1
Q ss_pred CCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC------CcEEEEEcCCCeEEEEEccCCCc-eee
Q 020107 116 SATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ------PHMVYTGSDDCKFSGWDIRESPF-KLA 187 (331)
Q Consensus 116 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~ 187 (331)
+..+|+ .|.....++-.|++.|+. +..+..|..- -+.|.|.. ...-+.|-.+..|.-.|.|-... +..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv--veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV--VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccccee--eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 444443 344566777778887765 7777766643 56777731 12234455566666677765332 222
Q ss_pred eecccCCCcceEEEEEec---CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 188 FQNSKIHKMGVCCIASIP---SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
... ...++.-.|+. ....++|+++..|-|++||--.- ...+.+.+.+..|..+..+.+| ..++++|. ..
T Consensus 554 ~es----KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~G-k~ilaTCk-~y 625 (776)
T COG5167 554 VES----KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANG-KHILATCK-NY 625 (776)
T ss_pred eee----hhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCC-cEEEEeec-ce
Confidence 221 22222222221 13568999999999999997542 2223346778889999999987 56666654 45
Q ss_pred EEEEEEc
Q 020107 265 FAVVKVG 271 (331)
Q Consensus 265 ~~~~~~~ 271 (331)
+.+.++.
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 5555554
No 440
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.36 E-value=4.3 Score=31.65 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=67.6
Q ss_pred EEEEEcCCCCeEEEEec-CCeEEEEE--cccccee---eeeeeec----ccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 109 LCLEWNPSATSITVGLS-DGSVSIVS--VVESQLE---VLQQWKA----HEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~-dg~i~i~d--~~~~~~~---~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
+.++|+.+.+.+..... +-+|.-|| ..++... .+..++. .....-.++... ++++.+++-..++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 57889988887765544 77887787 4444321 1222221 011112334443 788899999999999999
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
..+++.+..+.. ....|+|++|---+-..|++..
T Consensus 240 p~tGK~L~eikl---Pt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKL---PTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEc---CCCceEEEEecCCCccEEEEEe
Confidence 999999999888 5888999999642334454443
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.15 E-value=7.2 Score=33.68 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=63.7
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC----Cceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK----PVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
....+.++.+.+ ++.+++++ .+|.+.. ....+.. .+...... ....+..+.|.++ +.++++|..+. ++
T Consensus 279 ~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d--~~~~a~G~~G~--v~ 351 (398)
T PLN00033 279 SARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK--KEAWAAGGSGI--LL 351 (398)
T ss_pred CccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCC--CcEEEEECCCc--EE
Confidence 355688999988 77777665 5565433 3333211 12221111 2235889999988 56677777665 33
Q ss_pred EEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 269 KVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 269 ~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
...+. ++.-.... .-....+.+.|.+++ +.+++| .+|.|.-|
T Consensus 352 ~s~D~-G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~~G--~~G~il~~ 396 (398)
T PLN00033 352 RSTDG-GKSWKRDKGADNIAANLYSVKFFDDK---------KGFVLG--NDGVLLRY 396 (398)
T ss_pred EeCCC-CcceeEccccCCCCcceeEEEEcCCC---------ceEEEe--CCcEEEEe
Confidence 33332 33323222 334578899998876 466665 58888665
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=9.9 Score=35.06 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=97.5
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc---------CccEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS---------SSMCLCLE 112 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---------~~~v~~~~ 112 (331)
.-.|+||++.+.. +..+.-.| +.+-.|.|+.+ ..|++...+|.+ ++++...... ...|..+.
T Consensus 63 ~~~I~If~~sG~l--L~~~~w~~-~~lI~mgWs~~-----eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNISGQL--LGRILWKH-GELIGMGWSDD-----EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred ceeEEEEeccccc--hHHHHhcC-CCeeeecccCC-----ceEEEEeccceEEEeecchhhhcccccccccccCceeEEE
Confidence 3458888877763 44442223 37889999987 367778899999 7776553321 22344444
Q ss_pred EcCCCCeEEEEecCCeEEEEE-ccccceeeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCc-eeee
Q 020107 113 WNPSATSITVGLSDGSVSIVS-VVESQLEVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPF-KLAF 188 (331)
Q Consensus 113 ~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 188 (331)
+..+| +++-..+|.+.+-. .+..........+....+-.|-...+.. ...++-....-...++-...... ...+
T Consensus 135 ~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 135 FFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44444 44444455554433 3221111111111111111222211111 11222111000112222222211 1112
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
.. ....+..+..+| +..+|+--..+|.|.+-+.... +.+.+.......+...++|..+
T Consensus 213 ~~---~~~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 213 SW---PNSSVVKISVSP-NRRFLALYTETGKIWVVSIDLS-QILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CC---CCceEEEEEEcC-CcceEEEEecCCcEEEEecchh-hhhhccCCCCCCchHhceeecC
Confidence 21 235678899999 8999999999999999888763 4444422233344447888776
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.04 E-value=3.1 Score=29.28 Aligned_cols=114 Identities=5% Similarity=-0.113 Sum_probs=68.6
Q ss_pred EEEecCCCCEEEEEecCCeEEEEEecCCC-------CCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEE
Q 020107 201 IASIPSDSNTLLTGSYDEYLRVWDVRSIS-------KPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 270 (331)
-.|.. ....|+.++.-|+|.|++..... .++. +......|++++-.+ +...-++..|+...+..|++
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS--FLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCcee--EEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 34555 44578888888999999876432 2233 356677888876444 33355666667788899999
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+...-..+ .-.+.|.++.+-.-+. ....+++.|| +..|.=+|.+-.
T Consensus 81 ~~N~d~Fyk---e~~DGvn~i~~g~~~~-----~~~~l~ivGG--ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYK---EVPDGVNAIVIGKLGD-----IPSPLVIVGG--NCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhh---hCccceeEEEEEecCC-----CCCcEEEECc--eEEEEEeCCCCc
Confidence 875322222 2234566665533221 1125667666 777777665543
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=91.48 E-value=7.7 Score=32.67 Aligned_cols=221 Identities=7% Similarity=-0.048 Sum_probs=104.1
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCcc--cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKI--SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
...+.+|.|... ..-++++. +|.+ -|....... ....+.++.|.++ ..+++ +..|.|.. .+
T Consensus 45 ~~~l~~v~F~d~----~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~--S~ 115 (334)
T PRK13684 45 EANLLDIAFTDP----NHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH--TT 115 (334)
T ss_pred CCceEEEEEeCC----CcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE--EC
Confidence 457899999855 55666665 5655 455433222 2334677887643 33444 45555433 33
Q ss_pred c--cceeeeee---eecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 136 E--SQLEVLQQ---WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 136 ~--~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
. ..++.+.. +..+. ....+..+ ...++. +..|.|..= ...++.=..+.. .-...+..+.+.| ++.+
T Consensus 116 DgG~tW~~~~~~~~~~~~~--~~i~~~~~--~~~~~~-g~~G~i~~S-~DgG~tW~~~~~--~~~g~~~~i~~~~-~g~~ 186 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPGSP--YLITALGP--GTAEMA-TNVGAIYRT-TDGGKNWEALVE--DAAGVVRNLRRSP-DGKY 186 (334)
T ss_pred CCCCCCeEccCCcCCCCCc--eEEEEECC--Ccceee-eccceEEEE-CCCCCCceeCcC--CCcceEEEEEECC-CCeE
Confidence 2 12322211 11221 22222222 223333 334444221 122222111111 1245688999998 7766
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCc
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGS 286 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~ 286 (331)
++++. .|.+.. ..+...+........-...++.+.+.+++ .+++.+..+. .+.. ....+..-..... ...
T Consensus 187 v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~vg~~G~-~~~~-s~d~G~sW~~~~~~~~~~~~ 260 (334)
T PRK13684 187 VAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDG--NLWMLARGGQ-IRFN-DPDDLESWSKPIIPEITNGY 260 (334)
T ss_pred EEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCC--CEEEEecCCE-EEEc-cCCCCCccccccCCcccccc
Confidence 66654 454432 11222232333223445678999999984 3444444443 2222 1221222221111 123
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
.+.++.+.+++ ..++ ++ .+|.|..
T Consensus 261 ~l~~v~~~~~~---------~~~~-~G-~~G~v~~ 284 (334)
T PRK13684 261 GYLDLAYRTPG---------EIWA-GG-GNGTLLV 284 (334)
T ss_pred ceeeEEEcCCC---------CEEE-Ec-CCCeEEE
Confidence 57788888876 4554 44 5776653
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.43 E-value=0.3 Score=45.16 Aligned_cols=191 Identities=9% Similarity=-0.039 Sum_probs=104.5
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC--CCceeeeec--ccCCCcceEEE
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE--SPFKLAFQN--SKIHKMGVCCI 201 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~~~~~~v~~~ 201 (331)
.+.+++-+....-. .-..+++..+.+-.+.|...+...+. -.=|.+.+||+.- |+....+.. .......+.-|
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 45677766654211 01223455667777777532322222 3346788998863 333222221 12234556677
Q ss_pred EEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-----------EECCCCCCeEEEEEecCcEEEE
Q 020107 202 ASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-----------KHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 202 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
.|+|. +.-++..+-.++.|++..+....+.+ +..|...+..+ ..+||| ..+++.+.++.++.|
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l---~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALRSL---FRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY 262 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHHHH---HHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence 77764 34566667778899988877643322 23476665543 368887 778888888888888
Q ss_pred EEcCcc---cceeEEeecCCc-ceeeeeecCCCCccccccc---CcEEEEeecCCCeEEEEcCCC
Q 020107 269 KVGGEK---AEVLETYAKHGS-LAYGADWQRGRSSLEGKRK---NSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 269 ~~~~~~---~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~---~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.+.-.. .+++...+.|.+ +-.+.-+..... ...+ =.++++++.....+++|.-..
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~---~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEI---LVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccc---cCCccceeEEEEecccCCcceeEeeccc
Confidence 775432 455666666663 222222322210 0000 034555552556789997543
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.05 E-value=1.5 Score=39.68 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCCCeEEEEecCCeEEEEEccc----cceeeeeeeec--------------------ccceeEEEeeCC---CCCcEEEE
Q 020107 115 PSATSITVGLSDGSVSIVSVVE----SQLEVLQQWKA--------------------HEFELWATSFDV---HQPHMVYT 167 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~---~~~~~l~~ 167 (331)
++...++++..||.+....... +..-....+.. ....+..+++++ .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667889999999998887764 11000000000 112344455543 25678999
Q ss_pred EcCCCeEEEEEccCCCceeee
Q 020107 168 GSDDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~~~ 188 (331)
.+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885544
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=12 Score=36.94 Aligned_cols=141 Identities=11% Similarity=0.049 Sum_probs=82.8
Q ss_pred cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe-cC------CCCEEEEEecCCeEEEEEecCCCCC-----ceee-
Q 020107 169 SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI-PS------DSNTLLTGSYDEYLRVWDVRSISKP-----VNET- 235 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~------~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~- 235 (331)
+.|..+.+|+..++.....+.. -...|..|..- |- .=++++.-+.--.|.++-+...+.+ ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~---~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG---LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc---hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 3588999999998766666655 44455555432 20 1123333333344555544322111 1110
Q ss_pred -eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC--cc---------------------cceeEEeecCCcceeee
Q 020107 236 -SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG--EK---------------------AEVLETYAKHGSLAYGA 291 (331)
Q Consensus 236 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------~~~~~~~~~h~~~v~~~ 291 (331)
....+..|.++....+ +.++.+|.+++ +|.+.- .. +..+.....+.++|..+
T Consensus 173 ~i~~dg~~V~~I~~t~n--GRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTEN--GRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred eeecCCceEEEEEeccC--CcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 1122456888886666 67777778887 555421 11 12112122567789999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
...... +.+.+-+ +.++|++|++..
T Consensus 249 ~ID~SR---------~IlY~ls-ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSR---------NILYVLS-EKGTVSAYDIGG 273 (1311)
T ss_pred Eecccc---------ceeeeec-cCceEEEEEccC
Confidence 888887 6888988 999999999976
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.75 E-value=8.1 Score=31.60 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=121.1
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-----cccceEEeEee-----ecCcEeEEEEcCCCCC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-----EEKNLELLYRM-----DTAGIFDIKWSPVGGN 80 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ 80 (331)
....|+++|.++ -+++.. ..+...+||... ...++...... .....+.+.|+....-
T Consensus 24 N~WGia~~p~~~--~WVadn-----------gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANT-----------GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF 90 (336)
T ss_pred ccceeEecCCCC--EEEecC-----------CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce
Confidence 345688888774 344444 488999999872 12123322221 1235778888755110
Q ss_pred --------CCCeEEEEcCCccE-EEecCCCcc------------cCccE-EEEEEcC--CCCeEEEEec-CCeEEEEEcc
Q 020107 81 --------AGPFLAQADADGGL-LRDITGEKI------------SSSMC-LCLEWNP--SATSITVGLS-DGSVSIVSVV 135 (331)
Q Consensus 81 --------~~~~l~~~~~dg~i-iw~~~~~~~------------~~~~v-~~~~~~~--~~~~l~~~~~-dg~i~i~d~~ 135 (331)
....++.+++||+| -|...-... ....| ..+++.. .+.+|..+.. .++|.++|-.
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 01246778899999 777422111 01222 2344432 3455655543 7888888754
Q ss_pred ccceeeeeeeec----------------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107 136 ESQLEVLQQWKA----------------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199 (331)
Q Consensus 136 ~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 199 (331)
-.+...-..+.. ..--|+-..-.+ +.+.=+.+..-|.|-+||+. ++.++.+.. .+.-....
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as-~g~LNaPW 247 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVAS-SGRLNAPW 247 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEecc-CCcccCCc
Confidence 322110000100 001111111122 12223334455799999987 455555543 22334456
Q ss_pred EEEEecC-----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecC-----CceEEEEECCC-----CCCeEEEEEec
Q 020107 200 CIASIPS-----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG-----GGVWRIKHHPF-----IPGLVLAACMH 262 (331)
Q Consensus 200 ~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-----~~~~~~~~~~~ 262 (331)
.|+..|. .+.+|+----||+|..||..++. -+-.+..... ..++.|+|... .+.++.+++-+
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~-~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA-QLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc-eeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 6666552 46677776789999999998753 2222112222 24677888762 12455555543
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.71 E-value=2.2 Score=33.33 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=44.1
Q ss_pred EcCCCCeEEEEecCCeEEEEEccccceeeee----e-ee-------cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107 113 WNPSATSITVGLSDGSVSIVSVVESQLEVLQ----Q-WK-------AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR 180 (331)
Q Consensus 113 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~-~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (331)
+..++++|++-+.+|.+++||+.+++..... . +. .....|..+.++. ++.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 3447788999999999999999986531111 0 11 2345677777774 555555554 4677777766
Q ss_pred CC
Q 020107 181 ES 182 (331)
Q Consensus 181 ~~ 182 (331)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 450
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.58 E-value=3.8 Score=30.67 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=25.5
Q ss_pred cCccEEEEEEcCCC------CeEEEEecCCeEEEEEcc
Q 020107 104 SSSMCLCLEWNPSA------TSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 104 ~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~ 135 (331)
....+..++|+|.| -.|++-+.+|.|.+|...
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 34578999999954 258888889999999876
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.57 E-value=2.6 Score=32.97 Aligned_cols=72 Identities=8% Similarity=0.008 Sum_probs=44.6
Q ss_pred CcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-----eee-------ecCCceEEEEECCCCCCeEEEEEec
Q 020107 195 KMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-----TSV-------CLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
..++..+.. .+.+|++.+.+|.+++||+.+.+..+.. ++. .....|..+..+.+| ..++.-++
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G--~PiV~lsn 86 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG--VPIVTLSN 86 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC--CEEEEEeC
Confidence 344544543 6788999999999999999986432221 111 344567888888664 44444455
Q ss_pred CcEEEEEEc
Q 020107 263 NGFAVVKVG 271 (331)
Q Consensus 263 ~~~~~~~~~ 271 (331)
+....|+..
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 555555543
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.07 E-value=10 Score=31.83 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=39.3
Q ss_pred CcceEEEEEecC------CCCEEEEEecCCeEEEEEecCCCCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCc
Q 020107 195 KMGVCCIASIPS------DSNTLLTGSYDEYLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 195 ~~~v~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
...+..+.|-+. .+.+|++.-..+.|....+......... ++.....++..+++.|++ .++++...++.
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~ 328 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGK 328 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTT
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-eEEEEECCCCe
Confidence 345666776631 3446666656678888888754332222 112344579999999996 56666655666
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=7.3 Score=29.90 Aligned_cols=176 Identities=8% Similarity=0.017 Sum_probs=90.0
Q ss_pred CCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107 116 SATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 116 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 193 (331)
++.++.+.+. ...|++||+++++......+.. ..+..--............-.+|.-..+|.++-++...+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y--- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY--- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc---
Confidence 3444555544 4579999999876533333331 11111111111223333445688889999998877666664
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc---eEEEEECCCCCCeEEEE-EecCcEEEEE
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG---VWRIKHHPFIPGLVLAA-CMHNGFAVVK 269 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~-~~~~~~~~~~ 269 (331)
.+.=..++. ++..|..+....+++.-|..+....-.........+ ++.+.|-. +.+.+. -..+. +.+
T Consensus 130 -~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd---G~lyANVw~t~~--I~r 200 (262)
T COG3823 130 -EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD---GELYANVWQTTR--IAR 200 (262)
T ss_pred -CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec---cEEEEeeeeecc--eEE
Confidence 444455554 344455555556677767665422111111122222 23344443 233332 22333 444
Q ss_pred EcCcccceeEEee------------cCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 270 VGGEKAEVLETYA------------KHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 270 ~~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
+...+++.+..+. .|....+++++.|+.. ++++||-
T Consensus 201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~--------r~~iTGK 248 (262)
T COG3823 201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQD--------RFLITGK 248 (262)
T ss_pred EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCC--------eEEEecC
Confidence 4444444443332 3455678899999885 6777763
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.78 E-value=13 Score=32.37 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccE-EEecCCCccc----------CccEEEEEEcC----CCC-eEEEEecCCeEEEEEccccc-------
Q 020107 82 GPFLAQADADGGL-LRDITGEKIS----------SSMCLCLEWNP----SAT-SITVGLSDGSVSIVSVVESQ------- 138 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~~----------~~~v~~~~~~~----~~~-~l~~~~~dg~i~i~d~~~~~------- 138 (331)
...|++|+..|.+ |+........ +.+|..++.-+ ... .||+ -.-..+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 6799999999999 8877654432 56777776432 222 3444 455778888874311
Q ss_pred eeeeeeeeccc--ceeEEEeeCCC----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 139 LEVLQQWKAHE--FELWATSFDVH----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 139 ~~~~~~~~~~~--~~v~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
.-.+..+..|. .....+++-|. +..++..-+.||.+.+++-+.-.....+.. ---...+.|.| ..+.|+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~----~llPgPl~Y~~-~tDsfv 190 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD----FLLPGPLCYCP-RTDSFV 190 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC----CCCCcCeEEee-cCCEEE
Confidence 11122222232 12233333222 247889999999999999775432222221 22234467788 778899
Q ss_pred EEecCCeEEEEEec
Q 020107 213 TGSYDEYLRVWDVR 226 (331)
Q Consensus 213 ~~~~d~~i~iwd~~ 226 (331)
+++.+..+..|...
T Consensus 191 t~sss~~l~~Yky~ 204 (418)
T PF14727_consen 191 TASSSWTLECYKYQ 204 (418)
T ss_pred EecCceeEEEecHH
Confidence 99988999998764
No 455
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=7.8 Score=37.87 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.7
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCC
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.+ ++..++++..||.+.+||...+
T Consensus 243 ~~-~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SR-DGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cc-CCceEEEEEecCCEEeeecCCC
Confidence 56 7899999999999999999875
No 456
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=89.50 E-value=16 Score=33.00 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=95.3
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc--cCCCcceEEEEEecCCCCEEEEEecC--------
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS--KIHKMGVCCIASIPSDSNTLLTGSYD-------- 217 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d-------- 217 (331)
....|.++.|.- +..+++|=-.---+.+.|+..++...++-.. ++... -.||.+.++|+--|.|
T Consensus 324 ~gE~IysvRF~G-d~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~-----YLHP~~e~~LlGiG~~~~~~~~~~ 397 (521)
T PF09826_consen 324 PGERIYSVRFMG-DRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSD-----YLHPYDENHLLGIGKDTDEDEGTG 397 (521)
T ss_pred CCceEEEEEEeC-CeEEEEEEeecCceEEEECCCCCCCceeeEEECccchh-----ceeECCCCeEEEEcccCccccccc
Confidence 457899999985 6677777766667889999887654443321 22222 3456555565555432
Q ss_pred ----CeEEEEEecCCCCCceeeeeec--CC-------ceEEEEECCCCCCeEEEEEe-------cCcEEEEEEc-Ccccc
Q 020107 218 ----EYLRVWDVRSISKPVNETSVCL--GG-------GVWRIKHHPFIPGLVLAACM-------HNGFAVVKVG-GEKAE 276 (331)
Q Consensus 218 ----~~i~iwd~~~~~~~~~~~~~~~--~~-------~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~ 276 (331)
=+|.+||+.....|........ .+ .-.++.|.+.. ++++.--. ..+..++++. ...-.
T Consensus 398 ~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~-~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~ 476 (521)
T PF09826_consen 398 WTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEK-NLLAFPVSSSYGYFNFQGAYVFSIDPEDGFT 476 (521)
T ss_pred ccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCC-CEEEEEEEEccCccccceEEEEEEeCCCCeE
Confidence 2477899998766655421111 11 13457777764 44333222 2567788888 33233
Q ss_pred eeEEeecCCc-------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 277 VLETYAKHGS-------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 277 ~~~~~~~h~~-------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
....+. |.. .+....+..+ .|.+.+ ++.|+++++++.
T Consensus 477 ~~g~i~-h~~~~~~~~~~~~R~lyi~d-----------~lYtvS--~~~i~~~~l~t~ 520 (521)
T PF09826_consen 477 LKGKIT-HPSPDYYYSYQIQRSLYIGD-----------TLYTVS--DNGIKAYDLNTL 520 (521)
T ss_pred EEEEEE-ccCcccccccceeEEEEECC-----------EEEEEE--CCEEEEEehHhc
Confidence 344443 433 2555555554 677777 889999998764
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.51 E-value=12 Score=30.23 Aligned_cols=201 Identities=12% Similarity=-0.022 Sum_probs=112.0
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
.-..++-.|||..-+++...|.|--.|..+++.+ ..-.+....-..+...| ++..-++-+.. .|.-.|.++.. ..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~--~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~e-vt 137 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVE--TYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLE-VT 137 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceE--EEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccc-eE
Confidence 3456777888888888888888888888888652 22223344456677777 44444443222 56666666554 44
Q ss_pred eeecccC-CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 187 AFQNSKI-HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 187 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
.|..... -........|.+ .+++-.++.. |.---.|... ..+..+........+.|+-.|++ ...+++-..+.+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdG-svwyaslagnai 212 (353)
T COG4257 138 RFPLPLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPAR--NVISVFPAPQGGGPYGICATPDG-SVWYASLAGNAI 212 (353)
T ss_pred EeecccccCCCcccceeeCC-CccEEEeecc-ccceecCccc--CceeeeccCCCCCCcceEECCCC-cEEEEeccccce
Confidence 4444222 245678888999 8888888752 2221112221 22333223455567788899997 666666566664
Q ss_pred EEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..++......+.+..-.........+--+|.+ +.-+|-. ..+.+..+|..+.
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig---------~~wittw-g~g~l~rfdPs~~ 264 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---------RAWITTW-GTGSLHRFDPSVT 264 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccC---------cEEEecc-CCceeeEeCcccc
Confidence 33433332122222112212223334444554 4555554 5777777776554
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=17 Score=32.24 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=49.2
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc---------CCCceee---------eecccCCCcceEEEEEecCC--CC
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIR---------ESPFKLA---------FQNSKIHKMGVCCIASIPSD--SN 209 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~---------~~~~~~~~~~v~~~~~~~~~--~~ 209 (331)
-.|..+..++ .+..++..+.+|.+.++=.+ .++.... +.. ....-.+..++|+|.. ..
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-ss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-SSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-cCCceeeeeccccCCccCCc
Confidence 4577788887 67777777778876655422 1211110 001 1122346788999954 56
Q ss_pred EEEEEecCCeEEEEEecCC
Q 020107 210 TLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~ 228 (331)
.|..-+.|..||+||+...
T Consensus 182 hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eEEEEecCcEEEEEecCCc
Confidence 7888889999999999865
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.46 E-value=2.8 Score=38.07 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.0
Q ss_pred cEEEEeecCCCeEEEEcCCCccc
Q 020107 307 SLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 307 ~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+|++.+ .|++||+||+.++..
T Consensus 231 ~~l~tl~-~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 231 TFLFTLS-RDHTLRIWSLETGQC 252 (547)
T ss_dssp TEEEEEE-TTSEEEEEETTTTCE
T ss_pred CEEEEEe-CCCeEEEEECCCCeE
Confidence 6899999 999999999999865
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.06 E-value=13 Score=30.32 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=59.2
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc------CCCeEEEEEccCCCceeeeec-c-cCCCcce
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS------DDCKFSGWDIRESPFKLAFQN-S-KIHKMGV 198 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~v 198 (331)
..|++||....++.... .+-.+.|+++.|.. +..+++.|. ....+..||..+..-. .+.. . ..-.++|
T Consensus 16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCC--CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcE
Confidence 46899999987773332 23467899999984 666776664 4567888998876421 1211 0 1124678
Q ss_pred EEEEEecCCCC-EEEEEe-cC--CeEEEEEecCC
Q 020107 199 CCIASIPSDSN-TLLTGS-YD--EYLRVWDVRSI 228 (331)
Q Consensus 199 ~~~~~~~~~~~-~l~~~~-~d--~~i~iwd~~~~ 228 (331)
..+.+...+.. +.+.|. .+ ..|..||=.+.
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 88887654444 444443 23 34666765543
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.98 E-value=13 Score=32.67 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=86.9
Q ss_pred CCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC------CCEEEEEecCCeEEEEEecCCCCCce
Q 020107 161 QPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD------SNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 161 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
+.++| ..|+....++-.|+..++.+..+.. |..- -+.|.|.. ...-++|-.+..|.-.|.|-....+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec---CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 44444 4456667888899999999889987 5554 57777731 12234455566676667776433332
Q ss_pred eeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEE
Q 020107 234 ETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVA 310 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 310 (331)
. .....-++.-.|+. ...+++++++..+.|++++--.. +....+.+-...|-.+....+|. .+|+
T Consensus 553 v--~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~--rAKtalP~lG~aIk~idvta~Gk--------~ila 620 (776)
T COG5167 553 V--VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK--RAKTALPGLGDAIKHIDVTANGK--------HILA 620 (776)
T ss_pred e--eeehhccccccccccccccCceEEEecCCCceeeehhhcc--hhhhcCcccccceeeeEeecCCc--------EEEE
Confidence 2 22222222222322 12278888888888888876542 22334556677889999999995 5566
Q ss_pred EeecCCCeEEEEcC
Q 020107 311 TCSFYDRLLRIWMP 324 (331)
Q Consensus 311 s~~~~d~~i~iW~~ 324 (331)
|| ...|.+-|+
T Consensus 621 TC---k~yllL~d~ 631 (776)
T COG5167 621 TC---KNYLLLTDV 631 (776)
T ss_pred ee---cceEEEEec
Confidence 65 344444443
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.93 E-value=6.1 Score=29.56 Aligned_cols=33 Identities=3% Similarity=0.036 Sum_probs=26.6
Q ss_pred ceeEEEeeCCC-----CCcEEEEEcCCCeEEEEEccCC
Q 020107 150 FELWATSFDVH-----QPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 150 ~~v~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
..+..++|+|. .+.+|++.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 37889999983 2468899999999999987643
No 463
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.86 E-value=14 Score=30.34 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=109.8
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeeeeeec-----ccceeEEEeeCCC-----------CCcEEE
Q 020107 108 CLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQQWKA-----HEFELWATSFDVH-----------QPHMVY 166 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~-----------~~~~l~ 166 (331)
-+.|+++|.+..-++....+...+||... -....+..+.. .....+.+.|+.. ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 45788888888777777788888998861 11112223321 1235677777641 113467
Q ss_pred EEcCCCeEEEEEccCCCc---eeeeecccCCCcce-EEEEEecC-CCCEEEEE-ecCCeEEEEEecCCCCCceeeeeecC
Q 020107 167 TGSDDCKFSGWDIRESPF---KLAFQNSKIHKMGV-CCIASIPS-DSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 167 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v-~~~~~~~~-~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
.+++||+|.-|...-... ...+.........| ..+++... .+++|+.. -..++|.+||-.-.+..+. ....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~---g~F~ 181 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP---GSFI 181 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC---CCcc
Confidence 788999999998643322 11111101112333 34454431 24455444 4678999998654211110 0111
Q ss_pred Cc-------eEEEEECCCCCCeEEEEEecC----------cEEEEEEcCcccceeEEee--cCCcceeeeeecCCCCccc
Q 020107 241 GG-------VWRIKHHPFIPGLVLAACMHN----------GFAVVKVGGEKAEVLETYA--KHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 241 ~~-------v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~ 301 (331)
.+ ...|+--.. .++++-...+ +.-.+++.+..+++++++. +.-..-+.++..|.. .
T Consensus 182 DP~iPagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~---F 256 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES---F 256 (336)
T ss_pred CCCCCCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh---h
Confidence 11 111111111 2222222211 1115555555578888774 344566778876642 1
Q ss_pred ccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+...+.+|+ +-+-||+|..+|..++.
T Consensus 257 G~~sg~lLV-GNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 257 GSLSGALLV-GNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCCeEE-eecCCceeEEecCCCCc
Confidence 112224444 44479999999998765
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.70 E-value=26 Score=33.43 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=47.0
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
.-..+.|.+ +.+.|+.++ ...+.++|+++......+.. ......|..+.-+|.+..+++.-. ...|...|...
T Consensus 205 ~w~rI~W~~-~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~-~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 205 NWKRILWVS-DSNRLLVCN-RSKLMLIDFESNWQTEYLVT-AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cceeeEecC-CCCEEEEEc-CCceEEEECCCCCccchhcc-CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 345778876 556666665 46788999998765442222 225677888888884344444443 26688888877
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.28 E-value=20 Score=30.62 Aligned_cols=193 Identities=10% Similarity=0.053 Sum_probs=98.7
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE------EeeCCCCCc--EEEEEcCC---CeEEEEEccCCC-
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA------TSFDVHQPH--MVYTGSDD---CKFSGWDIRESP- 183 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~--~l~~~~~d---g~i~i~d~~~~~- 183 (331)
...+++....++-+.+||+..... ..+.. +.++. +.+. +.. ++++..++ ..|++|.+....
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~l---q~~~~--Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKEL---QSLPV--GRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EE---EEE-S--S-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred ccceEEEEeCCCCEEEEcCCCcEE---EeecC--CCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 345667777788899999986543 33321 12222 2332 112 23333332 479999886321
Q ss_pred ceeeeecc----cCCCcceEEEEE--ecCCCC-EEEEEecCCeEEEEEecCCCC------CceeeeeecCCceEEEEECC
Q 020107 184 FKLAFQNS----KIHKMGVCCIAS--IPSDSN-TLLTGSYDEYLRVWDVRSISK------PVNETSVCLGGGVWRIKHHP 250 (331)
Q Consensus 184 ~~~~~~~~----~~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~ 250 (331)
.+..+... ......++.+++ +|.++. ++++...+|.+.-|-+..... ++.+ ....+.+..+....
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~--f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE--FKVGSQPEGCVVDD 217 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE--EE-SS-EEEEEEET
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE--ecCCCcceEEEEec
Confidence 12222110 001234666665 343343 667778899999888863222 2232 34556788888877
Q ss_pred CCCCeEEEEEecCcEEEEEEcCcc-----cceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEK-----AEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
.. +.++.+-.+-+ ||.+.-.. ++.+....+ ...-|.+++.-.... ..+.+|+|.- .+++..+|+
T Consensus 218 e~-g~LYvgEE~~G--IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-----g~gYLivSsQ-G~~sf~Vy~ 288 (381)
T PF02333_consen 218 ET-GRLYVGEEDVG--IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD-----GKGYLIVSSQ-GDNSFAVYD 288 (381)
T ss_dssp TT-TEEEEEETTTE--EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC-----C-EEEEEEEG-GGTEEEEEE
T ss_pred cc-CCEEEecCccE--EEEEecCCCCCCcceeeecccccccccCccceEEEecCC-----CCeEEEEEcC-CCCeEEEEe
Confidence 65 77777766666 77765431 233333332 345677787754321 1123455554 788999999
Q ss_pred CCC
Q 020107 324 PES 326 (331)
Q Consensus 324 ~~~ 326 (331)
.+.
T Consensus 289 r~~ 291 (381)
T PF02333_consen 289 REG 291 (381)
T ss_dssp SST
T ss_pred cCC
Confidence 764
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.04 E-value=35 Score=33.14 Aligned_cols=178 Identities=14% Similarity=0.136 Sum_probs=95.7
Q ss_pred eEEEEEccccceeeeeeeecc--cceeEEEeeCCCCCc-EEEEEc-----------CCCeEEEEEccCCCceeeeecccC
Q 020107 128 SVSIVSVVESQLEVLQQWKAH--EFELWATSFDVHQPH-MVYTGS-----------DDCKFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~ 193 (331)
.|++.|..+++..+...+... ...+..+.|+..+.. +++++. .+|.++.|++-.......+-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 478888877765444333322 234556667643333 333332 235567777643332222221011
Q ss_pred CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
-...| .+.+|..+ ++++| ....+++||+.+ ++++..... .....|..+++... .++++...+.+..+....
T Consensus 934 ~~~~v--~Ai~~f~~-~~Lag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~~---RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 934 IPGPV--GAICPFQG-RVLAG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYGA---RIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred CCccc--eEEeccCC-EEEEe-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecce---EEEEeeccceEEEEEEec
Confidence 12334 45567344 55444 457899999987 344433122 23667888888764 566776777776666665
Q ss_pred cccceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 273 EKAEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 273 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
. .+.+..+-+ -...|+.+.+-..+ .+|.+. .=|.+.+-.+.
T Consensus 1006 ~-~n~l~~fadD~~pR~Vt~~~~lD~~----------tvagaD-rfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1006 E-DNQLIVFADDPVPRHVTALELLDYD----------TVAGAD-RFGNIAVVRIP 1048 (1205)
T ss_pred C-CCeEEEEeCCCccceeeEEEEecCC----------ceeecc-ccCcEEEEECC
Confidence 5 344444432 23456666666554 566665 55666665543
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.04 E-value=3.6 Score=21.83 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=20.5
Q ss_pred CCCCeEEEEec-CCeEEEEEccccceeeeeeee
Q 020107 115 PSATSITVGLS-DGSVSIVSVVESQLEVLQQWK 146 (331)
Q Consensus 115 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~ 146 (331)
|+++.|+++.. +++|.++|..+++. +..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~--~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV--IATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE--EEEEE
Confidence 56777776664 88999999876643 44443
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.36 E-value=24 Score=30.71 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=102.3
Q ss_pred eeecCcceeEeeecCCCCC--cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC
Q 020107 6 CELDGNADAVEFCPQDSYH--HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~--~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
..+......+.+-|++... +++.+=+ -||.+.+|+-+... +...... ---.-.+.|.|. .+
T Consensus 125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS----------~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~----tD 187 (418)
T PF14727_consen 125 HSLQRTAYNMCCGPFGGVKGRDFICVQS----------MDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPR----TD 187 (418)
T ss_pred EecccceeEEEEEECCCCCCceEEEEEe----------cCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeec----CC
Confidence 3445556666677776433 5666665 79999999977643 2332222 111334677777 77
Q ss_pred eEEEEcCCccE-EEecC------C---------------Ccc-------cCccEEEEE---EcCCCCeEEEEecCCeEEE
Q 020107 84 FLAQADADGGL-LRDIT------G---------------EKI-------SSSMCLCLE---WNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~------~---------------~~~-------~~~~v~~~~---~~~~~~~l~~~~~dg~i~i 131 (331)
.|++++.+..+ -+... . .+. -...+..+. ++.....+++-++ .++..
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~ 266 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFC 266 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence 88888888777 11110 0 000 022333333 2222223333333 45555
Q ss_pred EEccccceeeeeeeeccccee--EEE--eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEE---Ee
Q 020107 132 VSVVESQLEVLQQWKAHEFEL--WAT--SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIA---SI 204 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v--~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~---~~ 204 (331)
.+.. |.+...+.+....... ..+ ...|.....++.++.++.+.||.=.+- .+...- ...+| ++. +.
T Consensus 267 l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L----~WsA~l-~~~PV-al~v~~~~ 339 (418)
T PF14727_consen 267 LKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL----VWSAQL-PHVPV-ALSVANFN 339 (418)
T ss_pred EcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE----EEecCC-CCCCE-EEEecccC
Confidence 5543 4544444443322111 112 112212235888899999999964422 232210 12222 333 23
Q ss_pred cCCCCEEEEEecCCeEEEEEecC
Q 020107 205 PSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 205 ~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
. -...|++-+.+|.+.+-=+.+
T Consensus 340 ~-~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 340 G-LKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C-CCceEEEEcCCCcEEEEEeCC
Confidence 3 456888999999999887766
No 469
>PLN02193 nitrile-specifier protein
Probab=85.29 E-value=27 Score=31.14 Aligned_cols=108 Identities=8% Similarity=0.085 Sum_probs=54.3
Q ss_pred CCCeEEEEecC-----CeEEEEEccccceeeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCC
Q 020107 116 SATSITVGLSD-----GSVSIVSVVESQLEVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESP 183 (331)
Q Consensus 116 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 183 (331)
++...+.|+.+ ..+..||+.+.++..+..+.. ....-.+++. .++++++.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 44555666544 357889998877754433310 1111112222 2456777777543 46778877654
Q ss_pred ceeeeec--ccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCC
Q 020107 184 FKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSI 228 (331)
Q Consensus 184 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~ 228 (331)
-...-.. .+.....-..+.+ ++++++.++.+ ..+.+||+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence 2211100 0001111112222 56677777755 45888888763
No 470
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.09 E-value=36 Score=32.44 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=62.1
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeeeecccc--------eeEEEeeCC---------------CCCcEEEEEcCCCe
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF--------ELWATSFDV---------------HQPHMVYTGSDDCK 173 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~v~~~~~~~---------------~~~~~l~~~~~dg~ 173 (331)
+..+++++.++.|.-.|.++++. +-.+..... ....+++.. .....++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~--lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE--KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 55677778888888888888764 222221110 011222211 12347888889999
Q ss_pred EEEEEccCCCceeeeecccCCCcce-------------EEEEEecC-CCCEEEEEec----------CCeEEEEEecCCC
Q 020107 174 FSGWDIRESPFKLAFQNSKIHKMGV-------------CCIASIPS-DSNTLLTGSY----------DEYLRVWDVRSIS 229 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~-~~~~l~~~~~----------d~~i~iwd~~~~~ 229 (331)
|.-.|.++++....+.. .+.| ..+.-.|. .+..+++|+. +|.|+-+|.++++
T Consensus 272 LiALDA~TGk~~W~fg~----~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN----NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred EEEEECCCCCEEEEecC----CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 99999999987655432 1111 01111110 1345666642 6889999999875
Q ss_pred C
Q 020107 230 K 230 (331)
Q Consensus 230 ~ 230 (331)
.
T Consensus 348 l 348 (764)
T TIGR03074 348 L 348 (764)
T ss_pred E
Confidence 4
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.82 E-value=20 Score=29.29 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=65.5
Q ss_pred CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe------cCCeEEEEEecCCCCCceeeee----ecCC
Q 020107 172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS------YDEYLRVWDVRSISKPVNETSV----CLGG 241 (331)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~----~~~~ 241 (331)
..|++||..+.+-...-.. -.+.|++|.|.. +..+++.|. ....+..||+.+. ....... ...+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG---ISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCCCC---ceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCC
Confidence 4689999887653332222 567899999985 566666664 3456888998864 2222111 2357
Q ss_pred ceEEEEECCCCCC-eEEEEEe-cCcEEEEEEcCcccceeEE-eecCCcceeeeeecCC
Q 020107 242 GVWRIKHHPFIPG-LVLAACM-HNGFAVVKVGGEKAEVLET-YAKHGSLAYGADWQRG 296 (331)
Q Consensus 242 ~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 296 (331)
+|..+.+...... .++++.. .+...+......+...+.. .-+....|.++.+-|-
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 8888887544333 4444432 2333344444333333322 2222445666665554
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.75 E-value=27 Score=30.78 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee-----cccceeEEEeeCCC
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK-----AHEFELWATSFDVH 160 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 160 (331)
....|+|.|+++.|++--..|.|++++..++....+..+. ........++++|+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3467888888866655444688888876544322222111 13566789999983
No 473
>PLN02193 nitrile-specifier protein
Probab=84.39 E-value=29 Score=30.87 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=38.4
Q ss_pred CCCeEEEEecC----CeEEEEEccccceeeeeee---ecccceeEEEeeCCCCCcEEEEEcCC--------------CeE
Q 020107 116 SATSITVGLSD----GSVSIVSVVESQLEVLQQW---KAHEFELWATSFDVHQPHMVYTGSDD--------------CKF 174 (331)
Q Consensus 116 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d--------------g~i 174 (331)
+++..+.++.+ ..+.+||+.+.++..+... ........++.+ ++++++.|+.. ..+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCccccccCccceeccE
Confidence 56666666654 4688999998877544332 111111122222 45778888753 247
Q ss_pred EEEEccCCCc
Q 020107 175 SGWDIRESPF 184 (331)
Q Consensus 175 ~i~d~~~~~~ 184 (331)
.++|+.+.+-
T Consensus 405 ~~~D~~t~~W 414 (470)
T PLN02193 405 FALDTETLQW 414 (470)
T ss_pred EEEEcCcCEE
Confidence 8888876643
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.34 E-value=23 Score=29.68 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=58.8
Q ss_pred eeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecc------------cCCCcceEEEEEecCCCCEEE
Q 020107 151 ELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNS------------KIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~ 212 (331)
...++++.+ ++.++++.-.+ ..|..++.. ++....+... .......-+|+++| ++..|+
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF 162 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence 345677744 67777776666 788888876 5443333211 11456788999999 888666
Q ss_pred EEec-----CC---------eEEEEEec--CCCCCceeeeee--------cCCceEEEEECCCC
Q 020107 213 TGSY-----DE---------YLRVWDVR--SISKPVNETSVC--------LGGGVWRIKHHPFI 252 (331)
Q Consensus 213 ~~~~-----d~---------~i~iwd~~--~~~~~~~~~~~~--------~~~~v~~~~~~~~~ 252 (331)
+..+ |+ .++++.+. +...+..++... ....|..+.+-+++
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~ 226 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG 226 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC
Confidence 6543 22 15555444 322233332222 34678889999986
No 475
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.30 E-value=6.3 Score=36.57 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=56.8
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-----EEecCCCccc---------CccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-----LRDITGEKIS---------SSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-----iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
+.-..+.|-|. |..+++-..||.- ++--.++-.| ...+..++|+.....++++. ...|++|
T Consensus 247 g~e~~LSWkpq----gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lw 321 (1243)
T COG5290 247 GMEHQLSWKPQ----GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLW 321 (1243)
T ss_pred cchhccccccC----CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEE
Confidence 33445899999 9999998877654 3222222222 23345667776655555543 4789999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
-...-.+-..... .-..+.-+.|+|...+.++..+
T Consensus 322 ttkNyhWYLK~e~--~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 322 TTKNYHWYLKVER--QIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred EccceEEEEEEee--cCCCcceeeeccccCcEEEEec
Confidence 8776544222222 2345677899986555554443
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.92 E-value=26 Score=29.95 Aligned_cols=204 Identities=13% Similarity=0.165 Sum_probs=105.1
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc---CccEEEEEE----cCCCCe--EEEEec-C---CeEEEEEccc
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS---SSMCLCLEW----NPSATS--ITVGLS-D---GSVSIVSVVE 136 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---~~~v~~~~~----~~~~~~--l~~~~~-d---g~i~i~d~~~ 136 (331)
+|=.+|.+|. ..+++....++-+ ++++...... .+.++.+.. .-.++. |++++. + .+|++|.+..
T Consensus 58 AIWvnp~dp~-kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~ 136 (381)
T PF02333_consen 58 AIWVNPADPA-KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP 136 (381)
T ss_dssp EEE--SS-GG-G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET
T ss_pred cEecCCCCcc-cceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC
Confidence 3444666554 5567666676666 8888876542 233333221 113433 455543 2 4799998763
Q ss_pred --cceeeeee----eecccceeEEEee--CCCCC-cEEEEEcCCCeEEEEEccC---CC----ceeeeecccCCCcceEE
Q 020107 137 --SQLEVLQQ----WKAHEFELWATSF--DVHQP-HMVYTGSDDCKFSGWDIRE---SP----FKLAFQNSKIHKMGVCC 200 (331)
Q Consensus 137 --~~~~~~~~----~~~~~~~v~~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~---~~----~~~~~~~~~~~~~~v~~ 200 (331)
+.+..+.. +......++.+|+ +|.++ -+++....+|.+..|-+.. +. .++.|.. ...+-.
T Consensus 137 ~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EG 212 (381)
T PF02333_consen 137 DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEG 212 (381)
T ss_dssp TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEE
T ss_pred CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceE
Confidence 32222111 1111234566665 34333 3666777889988887752 22 2444444 457888
Q ss_pred EEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-----ecCCceEEEEEC--CCCCCeEEEEEe-cCcEEEEEEcC
Q 020107 201 IASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-----CLGGGVWRIKHH--PFIPGLVLAACM-HNGFAVVKVGG 272 (331)
Q Consensus 201 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 272 (331)
+.... ....|+.+-++.-|.-|+.+........... .....|-.|+.- +++.++|++++. ++...+|+...
T Consensus 213 CVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 213 CVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 88887 6678899989888888887643222112111 123456666664 455577777774 45566676654
Q ss_pred cccceeEEe
Q 020107 273 EKAEVLETY 281 (331)
Q Consensus 273 ~~~~~~~~~ 281 (331)
. ...+..|
T Consensus 292 ~-~~~~g~f 299 (381)
T PF02333_consen 292 P-NAYVGSF 299 (381)
T ss_dssp T---EEEEE
T ss_pred C-CcccceE
Confidence 3 3334444
No 477
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.33 E-value=22 Score=28.61 Aligned_cols=162 Identities=10% Similarity=-0.066 Sum_probs=81.2
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCC
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPS 116 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~ 116 (331)
...|+.+|+.+++ ......-...---..++...+ ++..-.-.++.. ++|..+.+.. ...-..++ .+
T Consensus 67 ~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~~d-----~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~d 138 (264)
T PF05096_consen 67 QSSLRKVDLETGK-VLQSVPLPPRYFGEGITILGD-----KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SD 138 (264)
T ss_dssp EEEEEEEETTTSS-EEEEEE-TTT--EEEEEEETT-----EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--EC
T ss_pred cEEEEEEECCCCc-EEEEEECCccccceeEEEECC-----EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cC
Confidence 5578899988875 222211111111122222222 233333444444 7777665431 23334555 46
Q ss_pred CCeEEEEecCCeEEEEEccccceeeeeeeecccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc--
Q 020107 117 ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-- 191 (331)
Q Consensus 117 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 191 (331)
++.|+.+.....|+++|..+-+............ .++.+.|. ++...+=.=....|...|..+++....+...
T Consensus 139 g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 139 GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHH
T ss_pred CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHh
Confidence 7788888888899999987643311111122222 34445554 4555555556666777777777655443220
Q ss_pred -------c---CCCcceEEEEEecCCCCEEEEE
Q 020107 192 -------K---IHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 192 -------~---~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
. +...-.+.|++.|..+.+++||
T Consensus 217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 217 RPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp HHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred hhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 0 0145689999999556666666
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.88 E-value=5.3 Score=21.16 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
..++++...++.|.++|..+++....+..
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 34555555788999999987765555554
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.53 E-value=56 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
.+..+|..+.+.. ...++.+-++.++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 4678999999998 788999999999999999987
No 480
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=81.48 E-value=4.1 Score=21.57 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=15.9
Q ss_pred CCCeEEEEecCCeEEEEEccc
Q 020107 116 SATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~ 136 (331)
.+..+++++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456899999999999998753
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.23 E-value=31 Score=28.84 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=29.7
Q ss_pred CCCCeEEEEecCC----eEEEEEccccceeeeeeeec-c-cc---eeEEEeeCCCCCcEEEEEcCC
Q 020107 115 PSATSITVGLSDG----SVSIVSVVESQLEVLQQWKA-H-EF---ELWATSFDVHQPHMVYTGSDD 171 (331)
Q Consensus 115 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~-~-~~---~v~~~~~~~~~~~~l~~~~~d 171 (331)
.+++..+.|+.++ .+..||+++.++..+..+.. . .. ....+.. .++.+++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI--NESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE--CCCEEEEECCcC
Confidence 3566677776653 35688998877754433211 0 10 1112222 255778888765
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.16 E-value=37 Score=29.66 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=89.1
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcccCc------------cEE-EEEEcCCCCeEEEEecCCeEEEE-
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSS------------MCL-CLEWNPSATSITVGLSDGSVSIV- 132 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~~~------------~v~-~~~~~~~~~~l~~~~~dg~i~i~- 132 (331)
..|..+-..|+ ++.|..-+.+...++++.+...... .|. .+..-..+..++++..||.|..|
T Consensus 221 ~~v~qllL~Pd----g~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPD----GKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCC----CCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 34666777888 7887776664333666554433211 111 11112245568889999998877
Q ss_pred Eccccc---eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 133 SVVESQ---LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 133 d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
|.+.+. ...++.++-...++..+.-. ++.+-+++-+..|++.++.....+....-. --..+.-++++| .+.
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~Sp-~~~ 370 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAMSP-NQA 370 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeeeCc-ccc
Confidence 554422 22233333333344444332 255678888899999888766544322212 233667789999 888
Q ss_pred EEEEEecCCeEEEEEecCC
Q 020107 210 TLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~ 228 (331)
++++-. .|.|+++.+++.
T Consensus 371 ~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 371 YLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hheeec-CCceEEEEecCC
Confidence 888764 577999998874
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.54 E-value=33 Score=28.69 Aligned_cols=66 Identities=8% Similarity=0.051 Sum_probs=37.3
Q ss_pred CCCeEEEEec-----CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC----eEEEEEccCCC
Q 020107 116 SATSITVGLS-----DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC----KFSGWDIRESP 183 (331)
Q Consensus 116 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 183 (331)
+++..+.|+. ...+..||+.+.++..+..+.... .....+.. .++++.+.|+.++ .+..||+.+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~-~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVK-LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEE-ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4555566653 246888999888775554332211 11111112 2557778887654 35688888754
No 484
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.45 E-value=63 Score=31.96 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.8
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL 94 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i 94 (331)
.....++|.|. ..++|.+...|.+
T Consensus 36 ~~~~~~afD~~----q~llai~t~tg~i 59 (993)
T KOG1983|consen 36 STPSALAFDPT----QGLLAIGTRTGAI 59 (993)
T ss_pred CCCcceeeccc----cceEEEEEecccE
Confidence 34667889999 8899999999999
No 485
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.44 E-value=53 Score=30.46 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=80.9
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------ccCc-cEEEEEEcCC------CCeEEEEec-C-
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------ISSS-MCLCLEWNPS------ATSITVGLS-D- 126 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~~~~-~v~~~~~~~~------~~~l~~~~~-d- 126 (331)
...|-++.|.++ ++.+++.-.+|.+ +|+..... .+.. .+++ .|.++ ..++++.+. +
T Consensus 129 ~~kvv~Ik~~~~----~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~ 203 (670)
T PF10395_consen 129 DDKVVGIKFSSD----GKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSN 203 (670)
T ss_pred ccceEEEEEecC----CCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCC
Confidence 567899999988 8899999999999 88882211 1111 1112 22221 234444433 2
Q ss_pred --CeEEEEEc--cccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC---cceE
Q 020107 127 --GSVSIVSV--VESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK---MGVC 199 (331)
Q Consensus 127 --g~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~ 199 (331)
-..+++.+ +..+...+.....+........|.-+.|.+..- .++.|.+|++..-+....+.....-. ..+.
T Consensus 204 ~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~v 281 (670)
T PF10395_consen 204 SKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLV 281 (670)
T ss_pred CcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccce
Confidence 34677777 222221121111122223333344334443333 67899999998776555555411111 2333
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 200 CIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
++. |...+.++.+ .+..|.+.|+.-
T Consensus 282 Sl~--~~s~nRvLLs-~~nkIyLld~~~ 306 (670)
T PF10395_consen 282 SLK--PPSPNRVLLS-VNNKIYLLDLKF 306 (670)
T ss_pred Eee--cCCCCeEEEE-cCCEEEEEeehh
Confidence 333 2244554444 357899999975
No 486
>PLN02153 epithiospecifier protein
Probab=78.91 E-value=38 Score=28.55 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=28.6
Q ss_pred eEEEEEccccceeeeeeeec----ccceeEEEeeCCCCCcEEEEEcCC-----------CeEEEEEccCCC
Q 020107 128 SVSIVSVVESQLEVLQQWKA----HEFELWATSFDVHQPHMVYTGSDD-----------CKFSGWDIRESP 183 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~ 183 (331)
.+.+||+.+.++..+..+.. ....-.+++.. ++++++.|+.+ ..+.+||..+.+
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 57778888776654433210 11111122222 45677777753 247788887654
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.87 E-value=46 Score=29.42 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=36.4
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc----cCCCcceEEEEEec
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS----KIHKMGVCCIASIP 205 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~ 205 (331)
-...+.++|.| ++.+|++--..|.|++++..++......... .........|+++|
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 34567999998 7777766554699999986654322221110 11357789999998
No 488
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=78.23 E-value=44 Score=28.89 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=77.2
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC-CCEEEEEecCCe--EEEEE
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD-SNTLLTGSYDEY--LRVWD 224 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~--i~iwd 224 (331)
...+|.++.|.. +-.++++--.-.-+.+.|+.+++..+.+... .-+-.+--.+|.+ +.+|-.|..+|. |.+||
T Consensus 426 ~gERIYAvRf~g-dv~yiVTfrqtDPlfviDlsNPenPkvlGeL---KIPGfS~YLHpigen~~lGvG~~~g~vKiSLFd 501 (603)
T COG4880 426 PGERIYAVRFVG-DVLYIVTFRQTDPLFVIDLSNPENPKVLGEL---KIPGFSEYLHPIGENRLLGVGAYQGGVKISLFD 501 (603)
T ss_pred CCceEEEEEEeC-ceEEEEEEeccCceEEEEcCCCCCCceeEEE---ecCCchhhccccCCCcEEEeecccCCceEEEEe
Confidence 456899999985 6667777777777889999887765544331 1111222235533 455666777775 55788
Q ss_pred ecCCCCCceeeeee---cCC----ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 225 VRSISKPVNETSVC---LGG----GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 225 ~~~~~~~~~~~~~~---~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
+.....|....... --. .-....|.|.. +.++.-...++. ++.+.+. ..+..-..|...+...-|..+-
T Consensus 502 iSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~-~ifFlPay~~gy-if~iedg--~kl~k~~e~k~na~RA~fi~dy 577 (603)
T COG4880 502 ISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEA-EIFFLPAYLGGY-IFFIEDG--SKLRKRAERKLNADRAFFIKDY 577 (603)
T ss_pred ccCCCCchhhhheehhhhcchhhhccceeecCCcc-cEEEecccCccE-EEEEecC--ceeeehhhhcccceeeEEecce
Confidence 87754433220000 001 11234455554 333333333443 6666553 3333334566666666676664
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=76.68 E-value=84 Score=31.29 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=82.1
Q ss_pred cEEEEEc---------CCCeEEEEEccC-----CCc-----eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEE
Q 020107 163 HMVYTGS---------DDCKFSGWDIRE-----SPF-----KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVW 223 (331)
Q Consensus 163 ~~l~~~~---------~dg~i~i~d~~~-----~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iw 223 (331)
.++++|. .-|.++|+|+-. ++. .+.+.. +..++.|..++=- +|. |+++ ...+|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~-eE~KGtVsavceV--~G~-l~~~-~GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYI-EEQKGTVSAVCEV--RGH-LLSS-QGQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeeh-hhcccceEEEEEe--ccE-EEEc-cCcEEEEE
Confidence 4677764 248899999853 211 222222 2356777777644 454 4444 34679999
Q ss_pred EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-c-CCcceeeeeecCCCCccc
Q 020107 224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-K-HGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~ 301 (331)
+++.....+..-+....--+.++..-. ++++++--..++.++....+ +..+..+. . ..-.++++.|--++..
T Consensus 1122 ~l~r~~~ligVaFiD~~~yv~s~~~vk---nlIl~gDV~ksisfl~fqee-p~rlsL~srd~~~l~v~s~EFLVdg~~-- 1195 (1366)
T KOG1896|consen 1122 KLDRDSELIGVAFIDLPLYVHSMKVVK---NLILAGDVMKSISFLGFQEE-PYRLSLLSRDFEPLNVYSTEFLVDGSN-- 1195 (1366)
T ss_pred EeccCCcceeeEEeccceeEEehhhhh---hheehhhhhhceEEEEEccC-ceEEEEeecCCchhhceeeeeEEcCCe--
Confidence 995544444332233332333333222 56777666677766666654 33333222 1 2336788888888752
Q ss_pred ccccCcEEEEeecCCCeEEEEcCC
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
-.++.+. .|+.|+++-..
T Consensus 1196 -----L~flvsD-a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1196 -----LSFLVSD-ADRNIHVYMYA 1213 (1366)
T ss_pred -----eEEEEEc-CCCcEEEEEeC
Confidence 3566666 78988887544
No 490
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=76.42 E-value=7.1 Score=18.82 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=20.1
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
..|.+++..+ .+++.+...+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577888654 7888888889999873
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.01 E-value=9.3 Score=19.93 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=18.8
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCC--CeEEEE
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD--RLLRIW 322 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d--~~i~iW 322 (331)
....-....|+||+. .|+-++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk---------~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGK---------YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSS---------EEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCC---------EEEEEecCCCCCCcCEE
Confidence 344567789999994 555444266 776666
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.95 E-value=7.4 Score=19.27 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.7
Q ss_pred cEEEEEcCCCeEEEEEccCCCce
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
..++.++.+|.+..+|.++++..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 46777888999999999888654
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.95 E-value=62 Score=28.94 Aligned_cols=137 Identities=9% Similarity=0.003 Sum_probs=61.4
Q ss_pred eEEEEcCCccEEEecCCCcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccc-ceeEEEeeCCCCC
Q 020107 84 FLAQADADGGLLRDITGEKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHE-FELWATSFDVHQP 162 (331)
Q Consensus 84 ~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 162 (331)
..+.-..+|.+.|.+.....+... +...++|.+++... ..+..+|+. |+......+.... .-=..+..-| ++
T Consensus 129 ~~~~iD~~G~Vrw~~~~~~~~~~~---~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nG 201 (477)
T PF05935_consen 129 YTYLIDNNGDVRWYLPLDSGSDNS---FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NG 201 (477)
T ss_dssp EEEEEETTS-EEEEE-GGGT--SS---EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS
T ss_pred eEEEECCCccEEEEEccCccccce---eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-CC
Confidence 444445566666666554443322 55677888776555 788888886 4332223332210 0112455556 66
Q ss_pred cEEEEEcC-------------CCeEEEEEccCCCceeeeeccc----------------------CCC--cceEEEEEec
Q 020107 163 HMVYTGSD-------------DCKFSGWDIRESPFKLAFQNSK----------------------IHK--MGVCCIASIP 205 (331)
Q Consensus 163 ~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~----------------------~~~--~~v~~~~~~~ 205 (331)
++|+.+.. .-.|..+| .+++.+..+.... ... ..++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 77766651 11244444 4444433332210 000 2388999999
Q ss_pred CCCCEEEEEecCCeEEEEEecCC
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.++.+++++-.-..|...|.+++
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS
T ss_pred CCCeEEEEcCcceEEEEEECCCC
Confidence 55555555544557777786553
No 494
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=74.10 E-value=61 Score=28.40 Aligned_cols=139 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEEcCCCeEEEEEc-------cCCCceeee-ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107 166 YTGSDDCKFSGWDI-------RESPFKLAF-QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV 237 (331)
Q Consensus 166 ~~~~~dg~i~i~d~-------~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 237 (331)
+-...|..+.+|+. ........+ .. +...+.++ +++-...|.|++|+--.....+.....
T Consensus 40 Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~---~~~~i~~v---------~lv~p~~G~v~f~~~I~~~l~~~t~~~ 107 (422)
T PF08801_consen 40 AWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDG---SSSSIPGV---------GLVKPKTGRVVFWESISHLLVLATPSQ 107 (422)
T ss_dssp EEEEETTEEEEEE--SS--GG--EEEEE--------------SE---------EEEE-TT-EEEEES-TT-TT--EEEE-
T ss_pred EEEEECCEEEEEeccCCCCCcCcccccceecCC---CCCCCceE---------EEEEcCCCCEEecccchhhhhcCcccc
Q ss_pred ----------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-------------------------cceeEEee
Q 020107 238 ----------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-------------------------AEVLETYA 282 (331)
Q Consensus 238 ----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 282 (331)
-..++.....-.-.. ..++++...+.+......+.. ...+....
T Consensus 108 i~l~gv~~~~l~~~e~~~~~~~~~~-~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~ 186 (422)
T PF08801_consen 108 ISLLGVSYSELLSGELSTSLTNVEP-SGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFS 186 (422)
T ss_dssp -----------------EEEEEEET-TTEEEEETT--EEEEEE-TTS-EEEEE-TT------------------------
T ss_pred ccccccceeeecCCceEEECCCCce-EEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcc
Q ss_pred cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 283 KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 283 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.....|..+...+.. +.+++.. .+|.|.+|++..+
T Consensus 187 ~~~~~I~~v~~d~~r---------~~ly~l~-~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 187 DPRPKIVQVAVDPSR---------RLLYTLT-SDGSIQVWDLGPG 221 (422)
T ss_dssp -----EEEEEEETTT---------TEEEEEE-SSE-EEEEEE-SS
T ss_pred cchhceeeEEecCCc---------CEEEEEe-CCCcEEEEEEeCC
No 495
>PLN02153 epithiospecifier protein
Probab=72.71 E-value=57 Score=27.51 Aligned_cols=53 Identities=8% Similarity=0.133 Sum_probs=27.9
Q ss_pred eEEEEEccccceeeeeeeecc-cc---eeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCCC
Q 020107 128 SVSIVSVVESQLEVLQQWKAH-EF---ELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRESP 183 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 183 (331)
.+.+||+.+.++..+...... .. ....+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 577788877665433222110 00 1222222 45677777753 357788887654
No 496
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.36 E-value=12 Score=19.54 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.++.++.+|.|.-.|.++++.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356668999999999999987766665
No 497
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.82 E-value=60 Score=27.35 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=107.2
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------ccCccEEEEEEcCC---CCeEEEEecC-----
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------ISSSMCLCLEWNPS---ATSITVGLSD----- 126 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~---~~~l~~~~~d----- 126 (331)
..++|+|.|+ ++++++ ...|.| +.+..... ........++++|+ ...|.+....
T Consensus 3 ~P~~~a~~pd----G~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPD----GRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETT----SCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCC----CcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3578999999 777665 448888 44411111 12455688999994 3444444331
Q ss_pred ----CeEEEEEcccc--ce---e-eeeeeec---ccceeEEEeeCCCCCcEEEEEcCC-------------CeEEEEEcc
Q 020107 127 ----GSVSIVSVVES--QL---E-VLQQWKA---HEFELWATSFDVHQPHMVYTGSDD-------------CKFSGWDIR 180 (331)
Q Consensus 127 ----g~i~i~d~~~~--~~---~-~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~ 180 (331)
..|.-|....+ .. + .+..+.. .......++|.| ++.+.++.+.. |.|.-.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 23444444433 11 1 1112221 223456799999 66776666533 233333322
Q ss_pred CCC------------ceeeeecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCC------------------
Q 020107 181 ESP------------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSIS------------------ 229 (331)
Q Consensus 181 ~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~------------------ 229 (331)
..- ....+.. ++. ....++|+|.++.++++= +.|..=.|--++.+.
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~--GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAY--GLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE----S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred CcCCCCCccccCCCceEEEEEe--CCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 110 0011111 122 246789999336655542 223222222222211
Q ss_pred ----------CCceeeeeecCCceEEEEECCCC-----CCeEEEEEe-cCcEEEEEEcCcccce--eEE-eecCCcceee
Q 020107 230 ----------KPVNETSVCLGGGVWRIKHHPFI-----PGLVLAACM-HNGFAVVKVGGEKAEV--LET-YAKHGSLAYG 290 (331)
Q Consensus 230 ----------~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-~~~h~~~v~~ 290 (331)
.|+.. ..+...+..+.|.... .+.++++.. ...|..+.+... ++. ... +......+.+
T Consensus 234 ~~~~~~~~~~~P~~~--~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~r~~~ 310 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFA--YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED-GSVTEEEEFLGGFGGRPRD 310 (331)
T ss_dssp CTGSS-TTS---SEE--ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEEECTTSSS-EEE
T ss_pred ccccCCCCcCcccee--ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC-CCccceEEccccCCCCceE
Confidence 11221 3344566777776432 234555544 345555555432 221 122 2344558999
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
+++.||+ .+.++-. .+|.|.
T Consensus 311 v~~~pDG---------~Lyv~~d-~~G~iy 330 (331)
T PF07995_consen 311 VAQGPDG---------ALYVSDD-SDGKIY 330 (331)
T ss_dssp EEEETTS---------EEEEEE--TTTTEE
T ss_pred EEEcCCC---------eEEEEEC-CCCeEe
Confidence 9999998 5777766 688774
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.82 E-value=14 Score=34.19 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=46.5
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
...++++.-+| .+..++.+..||.|++|+....+....... ..+-..+.|.. .-|++...|..+.-|.-.
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~----~~p~~nlv~tn---hgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEE----AKPKENLVFTN---HGLVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhh----cCCccceeeec---cceEEEeccchhheeecc
Confidence 34577888888 888999999999999999876554434433 33344455543 235666667766666543
No 499
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.38 E-value=1e+02 Score=29.00 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=35.2
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
--.|+||++.. +. +..+......+-.+.|+. ...|+....+|++++|++-..
T Consensus 63 ~~~I~If~~sG-~l--L~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 63 RPYIRIFNISG-QL--LGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ceeEEEEeccc-cc--hHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchh
Confidence 34688888763 32 333332233677999984 466777889999999998743
No 500
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=67.58 E-value=64 Score=25.97 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=42.0
Q ss_pred CccEEEEEEcC------CC-CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE---eeCCCCCcEEEEEcCCCeE
Q 020107 105 SSMCLCLEWNP------SA-TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT---SFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 105 ~~~v~~~~~~~------~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i 174 (331)
...|+|++--. +. ..|+.|.++|.|.|.|...-.. +..+.-..-++.-. .|.. -...++.+++||.|
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~i--l~~~~lpsvPv~i~~~G~~de-vdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTI--LKQVQLPSVPVFISVSGQYDE-VDYRIVVACRDGKI 252 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhhee--EEEEecCCCceEEEEEeeeec-cceEEEEEeCCCEE
Confidence 45577776432 11 3699999999999999876543 33333223233211 2211 34567888889988
Q ss_pred EEE
Q 020107 175 SGW 177 (331)
Q Consensus 175 ~i~ 177 (331)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 653
Done!