Query 020107
Match_columns 331
No_of_seqs 645 out of 1445
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 11:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 100.0 9.9E-48 3.4E-52 320.6 35.9 286 8-329 29-334 (344)
2 3ow8_A WD repeat-containing pr 100.0 1.8E-47 6.1E-52 316.7 35.7 282 8-325 31-320 (321)
3 1vyh_C Platelet-activating fac 100.0 5.9E-47 2E-51 324.2 37.2 275 9-324 108-409 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 8.6E-46 2.9E-50 309.4 37.2 273 10-323 56-340 (340)
5 4g56_B MGC81050 protein; prote 100.0 3E-46 1E-50 313.9 34.0 291 8-327 41-344 (357)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-45 8.8E-50 307.1 38.1 289 11-329 18-338 (345)
7 2pbi_B Guanine nucleotide-bind 100.0 6.8E-45 2.3E-49 305.4 38.6 275 10-323 65-354 (354)
8 2xzm_R RACK1; ribosome, transl 100.0 1.8E-44 6E-49 301.9 38.1 286 10-328 22-342 (343)
9 3frx_A Guanine nucleotide-bind 100.0 2.4E-44 8.4E-49 297.9 38.1 279 9-327 17-318 (319)
10 2ynn_A Coatomer subunit beta'; 100.0 1.3E-43 4.5E-48 291.6 37.5 282 9-327 13-303 (304)
11 2hes_X YDR267CP; beta-propelle 100.0 9.7E-44 3.3E-48 295.7 35.6 281 10-326 15-328 (330)
12 3iz6_a 40S ribosomal protein R 100.0 3.2E-44 1.1E-48 304.4 30.7 281 9-328 66-377 (380)
13 1erj_A Transcriptional repress 100.0 2.1E-42 7.1E-47 294.5 38.4 289 8-327 63-390 (393)
14 2ynn_A Coatomer subunit beta'; 100.0 1.4E-42 4.8E-47 285.5 34.2 249 58-329 5-262 (304)
15 1nr0_A Actin interacting prote 100.0 2.3E-42 7.7E-47 310.2 38.2 286 10-328 148-569 (611)
16 4aow_A Guanine nucleotide-bind 100.0 5.6E-42 1.9E-46 286.2 37.7 282 9-328 38-339 (340)
17 4ery_A WD repeat-containing pr 100.0 1.1E-41 3.6E-46 281.4 36.6 278 10-325 24-311 (312)
18 1nr0_A Actin interacting prote 100.0 1.9E-42 6.5E-47 310.7 34.4 280 9-328 18-357 (611)
19 4e54_B DNA damage-binding prot 100.0 8.6E-43 3E-47 300.8 28.9 288 8-330 118-434 (435)
20 3dm0_A Maltose-binding peripla 100.0 5.9E-41 2E-45 305.6 36.9 281 9-326 382-693 (694)
21 3zwl_B Eukaryotic translation 100.0 3.4E-40 1.2E-44 278.2 37.6 281 9-329 32-349 (369)
22 3dwl_C Actin-related protein 2 100.0 5.6E-42 1.9E-46 290.4 25.8 289 8-324 10-377 (377)
23 1vyh_C Platelet-activating fac 100.0 7.3E-41 2.5E-45 286.4 32.9 245 60-329 102-372 (410)
24 2ymu_A WD-40 repeat protein; u 100.0 3.3E-40 1.1E-44 294.7 38.3 268 10-323 304-577 (577)
25 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-40 3.9E-45 281.7 33.4 288 8-327 7-362 (372)
26 4g56_B MGC81050 protein; prote 100.0 2E-41 7E-46 284.5 28.1 262 42-329 24-304 (357)
27 3i2n_A WD repeat-containing pr 100.0 2.1E-40 7.3E-45 278.4 34.2 291 8-329 17-356 (357)
28 2pm9_A Protein WEB1, protein t 100.0 3.1E-41 1.1E-45 289.4 29.6 302 9-328 12-339 (416)
29 4gqb_B Methylosome protein 50; 100.0 2.9E-40 1E-44 275.5 33.8 242 7-273 80-332 (344)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-40 1.7E-44 275.1 33.6 250 61-327 10-284 (345)
31 3ow8_A WD repeat-containing pr 100.0 1.5E-40 5.1E-45 275.2 30.1 245 62-328 28-281 (321)
32 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-40 3.7E-45 291.5 30.3 305 5-327 129-518 (524)
33 1gxr_A ESG1, transducin-like e 100.0 2.4E-39 8.1E-44 269.8 36.8 275 7-324 49-335 (337)
34 2xyi_A Probable histone-bindin 100.0 7.8E-40 2.7E-44 281.9 34.9 303 4-328 40-412 (430)
35 4aez_A CDC20, WD repeat-contai 100.0 1.5E-39 5.3E-44 277.7 35.7 262 42-329 111-383 (401)
36 4gga_A P55CDC, cell division c 100.0 3.2E-39 1.1E-43 277.3 37.8 279 9-327 105-396 (420)
37 2pm7_B Protein transport prote 100.0 1.8E-39 6.1E-44 266.1 34.2 249 61-325 4-284 (297)
38 2pm9_A Protein WEB1, protein t 100.0 8.1E-41 2.8E-45 286.9 26.5 289 7-327 65-415 (416)
39 3ei3_B DNA damage-binding prot 100.0 1.2E-39 4.1E-44 276.8 33.3 278 9-326 73-382 (383)
40 2ymu_A WD-40 repeat protein; u 100.0 6.5E-39 2.2E-43 286.4 39.7 272 9-326 262-539 (577)
41 4h5i_A Guanine nucleotide-exch 100.0 1.1E-38 3.8E-43 268.6 37.0 293 4-328 9-345 (365)
42 3k26_A Polycomb protein EED; W 100.0 1.8E-39 6.3E-44 273.5 32.3 289 8-326 17-366 (366)
43 1sq9_A Antiviral protein SKI8; 100.0 2.6E-39 8.9E-44 275.8 33.3 293 9-327 16-396 (397)
44 1r5m_A SIR4-interacting protei 100.0 7.2E-39 2.5E-43 275.2 36.3 281 8-325 44-424 (425)
45 1gxr_A ESG1, transducin-like e 100.0 6.3E-39 2.2E-43 267.2 34.4 280 8-329 8-299 (337)
46 1got_B GT-beta; complex (GTP-b 100.0 9.8E-39 3.3E-43 266.7 32.7 246 58-328 47-303 (340)
47 3vl1_A 26S proteasome regulato 100.0 3.7E-39 1.3E-43 276.9 30.1 279 12-327 59-366 (420)
48 4ggc_A P55CDC, cell division c 100.0 5.5E-38 1.9E-42 259.6 35.6 277 12-327 28-316 (318)
49 2hes_X YDR267CP; beta-propelle 100.0 2.7E-38 9.4E-43 262.8 33.4 250 59-327 7-281 (330)
50 3iz6_a 40S ribosomal protein R 100.0 1E-39 3.6E-44 276.6 25.1 264 45-328 47-331 (380)
51 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-37 5.6E-42 256.1 37.4 272 9-329 18-299 (313)
52 4ery_A WD repeat-containing pr 100.0 4.7E-38 1.6E-42 259.6 33.6 248 58-329 15-271 (312)
53 3bg1_A Protein SEC13 homolog; 100.0 1.9E-39 6.5E-44 268.2 25.2 253 58-325 5-292 (316)
54 3vl1_A 26S proteasome regulato 100.0 4.2E-38 1.4E-42 270.4 34.4 274 22-326 107-419 (420)
55 2pm7_B Protein transport prote 100.0 1.6E-37 5.5E-42 254.5 34.2 248 8-272 8-285 (297)
56 3gre_A Serine/threonine-protei 100.0 1.7E-38 5.9E-43 274.3 28.8 279 9-323 63-437 (437)
57 2pbi_B Guanine nucleotide-bind 100.0 1.1E-37 3.7E-42 261.6 32.7 248 58-328 56-317 (354)
58 4a11_B DNA excision repair pro 100.0 4.1E-37 1.4E-41 262.9 36.7 291 8-329 42-368 (408)
59 3bg1_A Protein SEC13 homolog; 100.0 1.9E-37 6.6E-42 256.2 29.1 247 8-272 12-293 (316)
60 1erj_A Transcriptional repress 100.0 1.3E-36 4.4E-41 258.8 35.0 261 43-328 39-343 (393)
61 2aq5_A Coronin-1A; WD40 repeat 100.0 4.3E-38 1.5E-42 268.9 25.9 262 42-328 55-344 (402)
62 3f3f_A Nucleoporin SEH1; struc 100.0 6.2E-37 2.1E-41 256.0 31.8 256 58-328 3-339 (351)
63 3frx_A Guanine nucleotide-bind 100.0 8E-37 2.7E-41 252.8 32.0 243 58-327 9-268 (319)
64 3dw8_B Serine/threonine-protei 100.0 8.1E-37 2.8E-41 264.4 32.4 278 8-325 27-445 (447)
65 2xzm_R RACK1; ribosome, transl 100.0 4.7E-36 1.6E-40 250.8 35.4 245 58-328 13-287 (343)
66 3jrp_A Fusion protein of prote 100.0 1.5E-36 5.2E-41 256.9 32.9 253 59-326 4-287 (379)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-36 6.2E-41 292.7 35.4 284 9-328 615-1036(1249)
68 3mkq_A Coatomer beta'-subunit; 100.0 4.6E-36 1.6E-40 278.3 36.6 284 8-327 12-303 (814)
69 3mmy_A MRNA export factor; mRN 100.0 6.9E-36 2.4E-40 251.7 33.2 282 8-324 38-344 (368)
70 3v7d_B Cell division control p 100.0 8.6E-36 2.9E-40 259.4 34.5 262 25-329 133-424 (464)
71 1yfq_A Cell cycle arrest prote 100.0 2E-35 6.7E-40 246.8 34.2 275 8-323 10-321 (342)
72 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-35 7.6E-40 254.6 33.2 259 24-328 143-416 (435)
73 2oaj_A Protein SNI1; WD40 repe 100.0 6.8E-36 2.3E-40 277.8 31.0 239 6-269 14-309 (902)
74 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-36 2.2E-40 277.9 30.7 293 7-328 96-607 (902)
75 1k8k_C P40, ARP2/3 complex 41 100.0 3.9E-35 1.3E-39 247.7 31.2 244 62-326 4-274 (372)
76 1pgu_A Actin interacting prote 100.0 4.4E-35 1.5E-39 263.4 32.7 277 8-328 17-330 (615)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-34 4.6E-39 250.5 34.3 256 24-329 129-394 (445)
78 3dwl_C Actin-related protein 2 100.0 2E-36 6.7E-41 256.4 22.1 245 61-325 6-280 (377)
79 3dm0_A Maltose-binding peripla 100.0 4.9E-35 1.7E-39 266.6 32.2 247 58-328 374-634 (694)
80 1pgu_A Actin interacting prote 100.0 6.4E-35 2.2E-39 262.3 32.5 276 11-327 208-615 (615)
81 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.2E-34 2.1E-38 246.6 36.6 283 8-326 3-391 (450)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7E-34 2.4E-38 246.0 36.5 265 10-327 160-443 (445)
83 3jrp_A Fusion protein of prote 100.0 2.5E-34 8.6E-39 243.2 32.8 248 8-272 10-287 (379)
84 3i2n_A WD repeat-containing pr 100.0 1.1E-34 3.8E-39 243.5 29.8 251 57-327 9-292 (357)
85 2j04_B YDR362CP, TAU91; beta p 100.0 5E-36 1.7E-40 262.1 22.2 243 65-328 132-430 (524)
86 3ei3_B DNA damage-binding prot 100.0 5.3E-35 1.8E-39 248.1 28.0 245 58-329 65-342 (383)
87 3k26_A Polycomb protein EED; W 100.0 2.8E-35 9.7E-40 247.9 26.1 252 60-328 12-320 (366)
88 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-35 5.5E-40 286.0 27.5 274 9-325 961-1248(1249)
89 1r5m_A SIR4-interacting protei 100.0 2.5E-34 8.6E-39 246.9 31.1 259 43-328 24-363 (425)
90 2j04_A TAU60, YPL007P, hypothe 100.0 8.9E-35 3.1E-39 249.1 27.7 264 5-325 11-296 (588)
91 4aow_A Guanine nucleotide-bind 100.0 8E-34 2.7E-38 236.8 33.0 258 46-328 18-288 (340)
92 3jro_A Fusion protein of prote 100.0 5.2E-35 1.8E-39 268.1 27.9 252 60-326 3-285 (753)
93 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-34 8.9E-39 266.5 32.7 247 58-328 5-261 (814)
94 1yfq_A Cell cycle arrest prote 100.0 1.3E-34 4.6E-39 241.8 26.9 241 61-328 6-284 (342)
95 1sq9_A Antiviral protein SKI8; 100.0 1.6E-34 5.3E-39 246.3 27.3 247 58-328 8-324 (397)
96 4e54_B DNA damage-binding prot 100.0 2.1E-34 7.3E-39 248.4 27.9 249 61-329 114-390 (435)
97 3v7d_B Cell division control p 100.0 1.3E-33 4.4E-38 245.6 32.7 270 8-324 161-461 (464)
98 2xyi_A Probable histone-bindin 100.0 1.7E-33 5.7E-38 242.4 32.9 248 6-272 125-410 (430)
99 3gre_A Serine/threonine-protei 100.0 7.5E-35 2.6E-39 251.5 24.2 256 49-329 48-362 (437)
100 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-33 1.3E-37 232.9 33.0 256 8-283 10-349 (351)
101 3dw8_B Serine/threonine-protei 100.0 3.1E-34 1.1E-38 248.2 26.9 244 64-328 26-375 (447)
102 4aez_A CDC20, WD repeat-contai 100.0 2.1E-33 7.2E-38 239.7 31.6 236 9-273 134-381 (401)
103 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-33 1.1E-37 230.5 30.9 241 58-329 10-258 (313)
104 3zwl_B Eukaryotic translation 100.0 1.9E-32 6.5E-37 230.8 35.2 246 59-328 25-306 (369)
105 4gq1_A NUP37; propeller, trans 100.0 3.9E-34 1.3E-38 243.4 23.8 293 4-324 10-387 (393)
106 3jro_A Fusion protein of prote 100.0 9.3E-34 3.2E-38 259.8 26.9 248 8-272 8-285 (753)
107 3vu4_A KMHSV2; beta-propeller 100.0 1E-31 3.4E-36 225.4 31.8 271 8-327 18-337 (355)
108 4gga_A P55CDC, cell division c 100.0 1E-31 3.4E-36 230.7 32.4 234 11-273 149-396 (420)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-32 5.1E-37 234.6 27.0 242 68-328 36-301 (402)
110 3lrv_A PRE-mRNA-splicing facto 100.0 8.4E-32 2.9E-36 225.0 28.8 258 23-325 47-332 (343)
111 4h5i_A Guanine nucleotide-exch 100.0 1.9E-32 6.7E-37 230.5 24.8 240 25-273 84-344 (365)
112 3mmy_A MRNA export factor; mRN 100.0 9.5E-32 3.3E-36 226.4 28.7 250 58-329 31-307 (368)
113 4a11_B DNA excision repair pro 100.0 4.7E-32 1.6E-36 231.5 26.9 262 43-329 22-326 (408)
114 2w18_A PALB2, fancn, partner a 100.0 3.9E-31 1.3E-35 213.4 28.9 264 25-324 55-355 (356)
115 1l0q_A Surface layer protein; 100.0 3.8E-30 1.3E-34 218.8 36.1 263 25-329 3-278 (391)
116 3bws_A Protein LP49; two-domai 100.0 1.8E-30 6E-35 223.8 32.6 276 8-326 121-432 (433)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-30 8.8E-35 223.9 32.0 232 67-324 5-337 (450)
118 1p22_A F-BOX/WD-repeat protein 100.0 9.5E-31 3.3E-35 225.7 28.9 230 63-327 130-366 (435)
119 4gq1_A NUP37; propeller, trans 100.0 1.9E-31 6.7E-36 226.8 22.0 229 24-273 101-390 (393)
120 3vu4_A KMHSV2; beta-propeller 100.0 5E-30 1.7E-34 215.1 30.1 246 48-328 3-273 (355)
121 4ggc_A P55CDC, cell division c 100.0 9.9E-29 3.4E-33 204.0 33.4 234 11-273 69-316 (318)
122 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-30 5.9E-35 222.8 20.3 230 60-329 9-257 (588)
123 1l0q_A Surface layer protein; 100.0 1.5E-27 5.1E-32 202.8 35.9 287 7-328 29-344 (391)
124 3lrv_A PRE-mRNA-splicing facto 100.0 8.8E-29 3E-33 206.7 27.4 231 11-272 78-333 (343)
125 3bws_A Protein LP49; two-domai 100.0 2.5E-28 8.7E-33 210.3 28.8 235 66-328 122-392 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.1E-27 1.1E-31 202.1 29.0 282 11-328 64-389 (415)
127 2w18_A PALB2, fancn, partner a 100.0 2.5E-26 8.5E-31 185.5 23.7 198 46-270 137-355 (356)
128 1ri6_A Putative isomerase YBHE 100.0 6.3E-25 2.2E-29 183.0 32.9 266 42-325 13-307 (343)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-24 3.8E-29 186.2 33.0 230 44-297 159-409 (415)
130 1nir_A Nitrite reductase; hemo 99.9 9.2E-25 3.2E-29 192.4 32.0 274 21-329 146-461 (543)
131 3hfq_A Uncharacterized protein 99.9 1.6E-23 5.3E-28 175.2 34.8 283 25-329 3-322 (347)
132 2ecf_A Dipeptidyl peptidase IV 99.9 9.1E-25 3.1E-29 200.6 28.7 276 10-326 37-413 (741)
133 3u4y_A Uncharacterized protein 99.9 1.1E-23 3.7E-28 174.9 31.7 262 42-328 18-306 (331)
134 2ojh_A Uncharacterized protein 99.9 3.8E-24 1.3E-28 174.3 28.3 245 41-313 19-290 (297)
135 1nir_A Nitrite reductase; hemo 99.9 5.6E-23 1.9E-27 181.0 34.5 283 11-329 180-517 (543)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-24 4.9E-29 198.8 23.4 282 10-326 17-393 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 3E-23 1E-27 189.5 29.2 281 10-328 82-437 (706)
138 1pby_B Quinohemoprotein amine 99.9 1.2E-22 4.2E-27 168.7 26.7 261 25-328 2-312 (337)
139 2ecf_A Dipeptidyl peptidase IV 99.9 4.5E-23 1.5E-27 189.4 25.6 276 12-327 111-460 (741)
140 3vgz_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 161.0 33.3 270 5-298 36-326 (353)
141 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-22 4.4E-27 185.3 26.3 275 12-328 28-393 (706)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-23 1.5E-27 176.9 21.6 195 66-273 36-279 (434)
143 2ojh_A Uncharacterized protein 99.9 2.7E-22 9.2E-27 163.4 25.2 229 8-263 40-293 (297)
144 1ri6_A Putative isomerase YBHE 99.9 2.6E-21 8.8E-26 161.1 30.4 270 8-297 36-334 (343)
145 3scy_A Hypothetical bacterial 99.9 2.2E-20 7.7E-25 156.8 36.1 278 25-329 14-342 (361)
146 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-22 5.7E-27 173.4 20.8 207 104-327 35-279 (434)
147 1z68_A Fibroblast activation p 99.9 1.6E-22 5.5E-27 185.1 19.2 279 12-326 18-391 (719)
148 3o4h_A Acylamino-acid-releasin 99.9 1.5E-21 5.3E-26 174.3 24.8 266 9-326 21-315 (582)
149 1k32_A Tricorn protease; prote 99.9 3.8E-21 1.3E-25 182.6 28.9 272 11-328 297-639 (1045)
150 1k32_A Tricorn protease; prote 99.9 3.3E-21 1.1E-25 183.0 28.4 269 9-325 203-501 (1045)
151 3hfq_A Uncharacterized protein 99.9 8.3E-20 2.8E-24 152.5 30.7 251 10-278 40-323 (347)
152 1jof_A Carboxy-CIS,CIS-muconat 99.9 8.5E-20 2.9E-24 153.5 30.8 277 25-327 3-342 (365)
153 3vgz_A Uncharacterized protein 99.9 2.7E-20 9.4E-25 155.6 27.5 239 65-329 39-306 (353)
154 1jmx_B Amine dehydrogenase; ox 99.9 2.8E-20 9.6E-25 155.3 27.5 273 15-328 5-327 (349)
155 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-20 4.3E-25 172.6 27.1 268 12-298 63-422 (723)
156 3scy_A Hypothetical bacterial 99.9 8E-19 2.7E-23 147.4 33.9 267 10-294 50-360 (361)
157 3u4y_A Uncharacterized protein 99.9 5.4E-20 1.8E-24 152.6 26.3 228 82-329 10-255 (331)
158 1pby_B Quinohemoprotein amine 99.9 2.3E-19 7.9E-24 148.9 24.8 241 11-284 35-320 (337)
159 1z68_A Fibroblast activation p 99.8 6E-19 2.1E-23 161.4 25.5 287 12-328 62-445 (719)
160 3o4h_A Acylamino-acid-releasin 99.8 3.1E-19 1.1E-23 159.4 22.5 228 65-324 20-274 (582)
161 3pe7_A Oligogalacturonate lyas 99.8 2.6E-18 9E-23 145.6 22.2 273 15-325 41-381 (388)
162 4a5s_A Dipeptidyl peptidase 4 99.8 6.8E-18 2.3E-22 154.8 26.4 258 9-292 16-370 (740)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 5E-17 1.7E-21 136.6 29.0 240 11-273 41-342 (365)
164 3fvz_A Peptidyl-glycine alpha- 99.8 1.3E-16 4.5E-21 132.0 25.3 241 66-328 23-324 (329)
165 2oiz_A Aromatic amine dehydrog 99.8 5.7E-16 2E-20 129.7 27.6 255 43-327 30-335 (361)
166 4a5s_A Dipeptidyl peptidase 4 99.8 4.5E-17 1.5E-21 149.4 22.6 237 68-328 18-355 (740)
167 3azo_A Aminopeptidase; POP fam 99.8 3.4E-16 1.2E-20 141.9 27.8 279 10-328 24-371 (662)
168 2xdw_A Prolyl endopeptidase; a 99.8 1.7E-15 5.7E-20 138.4 31.1 242 67-328 125-416 (710)
169 1q7f_A NHL, brain tumor CG1071 99.8 2.1E-15 7.2E-20 122.3 28.1 234 65-327 28-281 (286)
170 3fvz_A Peptidyl-glycine alpha- 99.8 7.7E-15 2.6E-19 121.4 30.7 247 10-272 24-322 (329)
171 3c5m_A Oligogalacturonate lyas 99.8 5.9E-17 2E-21 137.5 18.3 276 12-327 38-385 (396)
172 2dg1_A DRP35, lactonase; beta 99.7 7.5E-15 2.6E-19 121.7 29.9 255 11-297 7-291 (333)
173 2bkl_A Prolyl endopeptidase; m 99.7 1.4E-15 4.9E-20 138.4 27.6 242 65-328 119-399 (695)
174 3pe7_A Oligogalacturonate lyas 99.7 7.4E-16 2.5E-20 130.5 23.5 243 63-329 27-332 (388)
175 1jmx_B Amine dehydrogenase; ox 99.7 2.7E-16 9.2E-21 131.0 19.7 231 71-328 4-286 (349)
176 2gop_A Trilobed protease; beta 99.7 7.9E-15 2.7E-19 122.2 27.2 234 43-325 42-330 (347)
177 3azo_A Aminopeptidase; POP fam 99.7 1.7E-15 5.9E-20 137.3 25.0 250 22-295 88-390 (662)
178 1q7f_A NHL, brain tumor CG1071 99.7 2.4E-14 8.2E-19 116.0 29.0 231 11-272 31-280 (286)
179 3e5z_A Putative gluconolactona 99.7 5.7E-14 2E-18 114.4 28.4 237 64-329 25-289 (296)
180 2z2n_A Virginiamycin B lyase; 99.7 9.2E-13 3.2E-17 107.1 34.1 271 11-328 16-297 (299)
181 1yr2_A Prolyl oligopeptidase; 99.7 1E-13 3.4E-18 127.2 28.3 242 65-328 161-443 (741)
182 3dsm_A Uncharacterized protein 99.7 5.4E-14 1.8E-18 116.2 23.7 253 42-325 15-301 (328)
183 2dg1_A DRP35, lactonase; beta 99.7 5.2E-14 1.8E-18 116.6 23.4 236 67-326 6-263 (333)
184 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-12 6.5E-17 114.0 34.2 262 42-327 175-478 (567)
185 1rwi_B Serine/threonine-protei 99.7 1.2E-13 4.1E-18 110.8 24.5 233 68-329 25-267 (270)
186 3e5z_A Putative gluconolactona 99.7 1.9E-13 6.6E-18 111.3 25.9 223 11-273 29-285 (296)
187 2oiz_A Aromatic amine dehydrog 99.6 2.3E-13 7.7E-18 114.0 26.4 267 14-297 54-359 (361)
188 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5.1E-18 110.2 24.2 233 11-273 25-265 (270)
189 3c5m_A Oligogalacturonate lyas 99.6 1.3E-14 4.4E-19 123.0 18.4 235 68-329 37-332 (396)
190 3no2_A Uncharacterized protein 99.6 5.9E-13 2E-17 107.0 25.8 227 25-284 6-262 (276)
191 2gop_A Trilobed protease; beta 99.6 8.4E-13 2.9E-17 109.9 26.1 233 11-286 60-341 (347)
192 2xdw_A Prolyl endopeptidase; a 99.6 2E-12 6.9E-17 118.1 30.8 237 12-272 127-414 (710)
193 2bkl_A Prolyl endopeptidase; m 99.6 6.7E-13 2.3E-17 120.9 25.2 236 12-272 123-397 (695)
194 2qc5_A Streptogramin B lactona 99.6 5.3E-11 1.8E-15 96.7 31.9 270 11-325 21-299 (300)
195 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-10 5.4E-15 101.9 36.7 291 7-329 194-541 (567)
196 2mad_H Methylamine dehydrogena 99.6 4.2E-11 1.5E-15 100.3 31.3 257 45-329 48-353 (373)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.5E-12 2.9E-16 102.2 26.7 236 66-326 17-299 (314)
198 3dsm_A Uncharacterized protein 99.5 6.1E-12 2.1E-16 103.9 24.5 220 42-282 62-309 (328)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.5E-16 101.1 26.1 234 11-272 19-299 (314)
200 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-12 4.7E-17 108.7 20.2 172 104-297 36-225 (388)
201 1xip_A Nucleoporin NUP159; bet 99.5 1.1E-12 3.6E-17 109.4 19.4 167 68-258 39-230 (388)
202 2z2n_A Virginiamycin B lyase; 99.5 6.2E-11 2.1E-15 96.2 29.2 232 66-325 14-254 (299)
203 3no2_A Uncharacterized protein 99.5 1.1E-11 3.7E-16 99.6 23.4 201 82-297 5-224 (276)
204 3g4e_A Regucalcin; six bladed 99.5 1.1E-10 3.7E-15 95.0 27.5 222 11-260 14-261 (297)
205 3g4e_A Regucalcin; six bladed 99.5 6.6E-10 2.3E-14 90.3 31.5 219 66-298 12-254 (297)
206 3sjl_D Methylamine dehydrogena 99.5 1.9E-10 6.4E-15 95.5 28.3 278 22-329 42-366 (386)
207 3hrp_A Uncharacterized protein 99.5 8.1E-11 2.8E-15 100.0 26.9 232 11-270 132-408 (409)
208 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-10 3.6E-15 107.2 28.6 239 11-271 164-440 (741)
209 3hrp_A Uncharacterized protein 99.5 1.8E-10 6.2E-15 97.9 27.6 233 68-325 132-409 (409)
210 2qc5_A Streptogramin B lactona 99.4 4.7E-10 1.6E-14 91.1 28.8 232 66-325 19-259 (300)
211 3c75_H MADH, methylamine dehyd 99.4 9.1E-11 3.1E-15 99.1 24.8 256 44-329 99-405 (426)
212 3iuj_A Prolyl endopeptidase; h 99.4 3E-10 1E-14 103.3 27.7 243 65-328 127-407 (693)
213 2ghs_A AGR_C_1268P; regucalcin 99.4 3.1E-09 1.1E-13 87.5 29.5 213 68-297 50-283 (326)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 2.3E-09 8E-14 88.3 28.3 220 12-263 51-293 (326)
215 3dr2_A Exported gluconolactona 99.3 4.4E-09 1.5E-13 85.8 26.6 231 58-320 37-301 (305)
216 3iuj_A Prolyl endopeptidase; h 99.3 2.7E-09 9.3E-14 97.0 26.9 224 12-261 131-391 (693)
217 2qe8_A Uncharacterized protein 99.3 2.5E-09 8.5E-14 88.8 23.6 241 58-319 9-314 (343)
218 3dr2_A Exported gluconolactona 99.3 4.6E-09 1.6E-13 85.7 24.4 216 12-265 47-299 (305)
219 1mda_H Methylamine dehydrogena 99.3 8.2E-10 2.8E-14 91.7 19.6 248 45-329 47-349 (368)
220 3sjl_D Methylamine dehydrogena 99.2 1.1E-08 3.8E-13 85.0 23.7 271 8-296 77-384 (386)
221 2mad_H Methylamine dehydrogena 99.2 1.9E-07 6.5E-12 78.2 30.1 250 14-280 70-356 (373)
222 2ece_A 462AA long hypothetical 99.1 1.9E-07 6.7E-12 78.3 27.0 202 112-326 88-352 (462)
223 1npe_A Nidogen, entactin; glyc 99.1 9.8E-07 3.4E-11 70.3 30.2 239 43-297 9-262 (267)
224 2ece_A 462AA long hypothetical 99.1 6.5E-07 2.2E-11 75.2 29.0 211 82-298 95-393 (462)
225 2hz6_A Endoplasmic reticulum t 99.0 1.8E-10 6E-15 96.6 5.9 186 116-329 8-195 (369)
226 1kb0_A Quinohemoprotein alcoho 99.0 2.5E-07 8.6E-12 83.7 26.8 193 117-329 174-510 (677)
227 2qe8_A Uncharacterized protein 99.0 3.2E-08 1.1E-12 82.1 18.4 207 106-327 17-279 (343)
228 1yiq_A Quinohemoprotein alcoho 99.0 7E-07 2.4E-11 80.9 28.3 73 154-229 239-340 (689)
229 2fp8_A Strictosidine synthase; 99.0 1.9E-06 6.6E-11 70.6 28.7 238 67-327 19-314 (322)
230 3c75_H MADH, methylamine dehyd 99.0 2E-07 6.8E-12 78.8 21.8 260 6-281 115-409 (426)
231 1fwx_A Nitrous oxide reductase 99.0 1.7E-07 5.8E-12 81.4 21.1 141 172-329 254-434 (595)
232 3hxj_A Pyrrolo-quinoline quino 99.0 3.9E-08 1.3E-12 80.9 16.7 240 42-325 38-283 (330)
233 1npe_A Nidogen, entactin; glyc 98.9 2.9E-06 9.8E-11 67.6 26.5 200 107-328 37-240 (267)
234 2hz6_A Endoplasmic reticulum t 98.9 7.2E-10 2.5E-14 92.9 5.6 183 82-282 9-200 (369)
235 1yiq_A Quinohemoprotein alcoho 98.9 3.1E-07 1.1E-11 83.2 22.4 188 110-313 239-537 (689)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.2E-06 4E-11 73.6 24.6 247 42-323 111-375 (376)
237 2iwa_A Glutamine cyclotransfer 98.9 4.8E-07 1.7E-11 71.2 20.5 194 108-326 23-237 (266)
238 3q7m_A Lipoprotein YFGL, BAMB; 98.9 5E-06 1.7E-10 69.7 28.1 254 42-329 61-340 (376)
239 1kb0_A Quinohemoprotein alcoho 98.9 8.4E-07 2.9E-11 80.3 24.4 181 110-298 247-532 (677)
240 1mda_H Methylamine dehydrogena 98.9 2.7E-07 9.1E-12 76.7 17.9 226 6-250 62-366 (368)
241 3hxj_A Pyrrolo-quinoline quino 98.8 6.5E-07 2.2E-11 73.5 18.4 210 84-327 109-325 (330)
242 4a2l_A BT_4663, two-component 98.8 7.3E-05 2.5E-09 69.2 32.9 254 43-327 234-527 (795)
243 2iwa_A Glutamine cyclotransfer 98.8 3.3E-06 1.1E-10 66.4 20.4 190 69-273 23-238 (266)
244 1ijq_A LDL receptor, low-densi 98.8 4.7E-05 1.6E-09 62.1 28.7 205 106-328 30-240 (316)
245 3v64_C Agrin; beta propeller, 98.7 7.4E-05 2.5E-09 61.9 29.6 222 43-282 52-283 (349)
246 3v65_B Low-density lipoprotein 98.7 5.5E-05 1.9E-09 63.6 27.5 233 43-293 95-337 (386)
247 2fp8_A Strictosidine synthase; 98.7 4.3E-05 1.5E-09 62.5 25.6 230 11-272 20-313 (322)
248 3nol_A Glutamine cyclotransfer 98.7 5.2E-06 1.8E-10 64.6 18.5 180 108-313 45-244 (262)
249 3v65_B Low-density lipoprotein 98.7 7.9E-05 2.7E-09 62.6 27.1 202 106-327 116-319 (386)
250 3nok_A Glutaminyl cyclase; bet 98.6 4.9E-06 1.7E-10 64.8 17.7 180 108-313 57-254 (268)
251 2p4o_A Hypothetical protein; p 98.6 0.0001 3.5E-09 59.8 26.3 217 67-297 32-269 (306)
252 1fwx_A Nitrous oxide reductase 98.6 2.3E-06 7.8E-11 74.5 16.7 192 115-326 99-361 (595)
253 4a2l_A BT_4663, two-component 98.6 0.00039 1.3E-08 64.3 33.7 249 45-327 283-572 (795)
254 2xe4_A Oligopeptidase B; hydro 98.6 0.00029 9.9E-09 64.7 31.1 191 12-224 176-395 (751)
255 3mbr_X Glutamine cyclotransfer 98.6 4.1E-05 1.4E-09 59.1 21.5 183 106-313 21-223 (243)
256 2xe4_A Oligopeptidase B; hydro 98.6 1.1E-05 3.8E-10 74.0 21.5 196 107-323 175-395 (751)
257 2xbg_A YCF48-like protein; pho 98.6 0.00017 5.8E-09 59.1 29.7 266 10-324 36-320 (327)
258 3p5b_L Low density lipoprotein 98.6 0.00012 4E-09 61.9 26.0 206 106-327 112-321 (400)
259 1k3i_A Galactose oxidase precu 98.6 1.5E-05 5.1E-10 72.1 21.8 281 14-313 190-529 (656)
260 3v64_C Agrin; beta propeller, 98.6 0.00021 7.1E-09 59.2 29.7 202 106-327 73-276 (349)
261 1kv9_A Type II quinohemoprotei 98.5 0.00016 5.5E-09 65.4 27.3 73 154-229 234-335 (668)
262 1ijq_A LDL receptor, low-densi 98.5 0.00027 9.4E-09 57.6 29.5 221 43-281 9-245 (316)
263 3v9f_A Two-component system se 98.5 0.00075 2.6E-08 62.3 30.8 253 45-327 231-525 (781)
264 3sov_A LRP-6, low-density lipo 98.5 0.00033 1.1E-08 57.1 27.9 213 43-269 12-235 (318)
265 3m0c_C LDL receptor, low-densi 98.5 0.00064 2.2E-08 62.3 29.1 222 43-281 403-639 (791)
266 3nol_A Glutamine cyclotransfer 98.4 0.0001 3.4E-09 57.5 19.9 161 44-216 65-244 (262)
267 2ad6_A Methanol dehydrogenase 98.4 0.00019 6.7E-09 63.5 24.2 54 173-229 273-337 (571)
268 3nok_A Glutaminyl cyclase; bet 98.4 0.00021 7.1E-09 55.7 21.2 181 69-264 57-258 (268)
269 2p4o_A Hypothetical protein; p 98.4 0.00051 1.7E-08 55.6 25.0 221 10-261 32-277 (306)
270 3p5b_L Low density lipoprotein 98.4 0.00072 2.5E-08 57.1 32.1 222 43-282 91-328 (400)
271 1kv9_A Type II quinohemoprotei 98.4 5E-05 1.7E-09 68.6 20.1 167 110-284 234-498 (668)
272 3sov_A LRP-6, low-density lipo 98.4 0.00054 1.8E-08 55.8 24.2 202 107-328 36-240 (318)
273 1flg_A Protein (quinoprotein e 98.4 0.00099 3.4E-08 59.1 27.6 55 172-229 291-357 (582)
274 1w6s_A Methanol dehydrogenase 98.4 0.00024 8.2E-09 63.1 23.6 55 172-229 278-344 (599)
275 3mbr_X Glutamine cyclotransfer 98.3 0.00045 1.5E-08 53.3 21.6 159 43-216 42-223 (243)
276 3m0c_C LDL receptor, low-densi 98.3 0.00047 1.6E-08 63.2 25.3 206 106-327 424-633 (791)
277 3v9f_A Two-component system se 98.3 0.0019 6.6E-08 59.6 34.8 253 43-327 277-569 (781)
278 3qqz_A Putative uncharacterize 98.3 0.00082 2.8E-08 52.5 25.2 194 10-224 27-250 (255)
279 3tc9_A Hypothetical hydrolase; 98.3 0.0015 5.2E-08 55.6 26.4 150 69-227 139-301 (430)
280 1n7d_A LDL receptor, low-densi 98.2 7.5E-06 2.6E-10 74.3 11.6 203 107-327 407-615 (699)
281 3tc9_A Hypothetical hydrolase; 98.2 0.0017 5.8E-08 55.4 25.6 149 11-181 138-301 (430)
282 2ad6_A Methanol dehydrogenase 98.2 0.00055 1.9E-08 60.6 22.9 178 111-297 240-518 (571)
283 3qqz_A Putative uncharacterize 98.2 0.0011 3.7E-08 51.8 28.2 201 106-325 27-252 (255)
284 4hw6_A Hypothetical protein, I 98.2 0.0021 7.1E-08 54.8 26.3 235 11-270 140-431 (433)
285 3amr_A 3-phytase; beta-propell 98.0 0.0028 9.4E-08 51.7 21.4 201 75-282 34-272 (355)
286 1w6s_A Methanol dehydrogenase 98.0 0.0019 6.5E-08 57.4 21.8 77 111-189 246-350 (599)
287 1k3i_A Galactose oxidase precu 98.0 0.0003 1E-08 63.6 16.7 187 24-228 254-498 (656)
288 1n7d_A LDL receptor, low-densi 98.0 5E-05 1.7E-09 68.9 11.5 233 43-293 385-633 (699)
289 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0086 2.9E-07 53.6 31.2 211 43-269 14-234 (628)
290 3kya_A Putative phosphatase; s 98.0 0.0031 1E-07 54.3 21.4 161 107-272 140-341 (496)
291 4a0p_A LRP6, LRP-6, low-densit 97.9 0.0066 2.2E-07 54.4 24.1 190 119-326 8-197 (628)
292 2p9w_A MAL S 1 allergenic prot 97.9 0.002 6.8E-08 52.0 18.3 162 148-326 11-215 (334)
293 2p9w_A MAL S 1 allergenic prot 97.9 0.0034 1.2E-07 50.6 19.5 153 69-227 15-215 (334)
294 3amr_A 3-phytase; beta-propell 97.9 0.006 2E-07 49.7 20.9 191 118-325 41-262 (355)
295 1flg_A Protein (quinoprotein e 97.9 0.0021 7E-08 57.1 19.8 180 111-298 251-541 (582)
296 3s94_A LRP-6, low-density lipo 97.8 0.012 3.9E-07 52.7 23.8 201 108-327 42-244 (619)
297 4hw6_A Hypothetical protein, I 97.8 0.011 3.9E-07 50.3 29.1 151 69-227 141-304 (433)
298 2xbg_A YCF48-like protein; pho 97.8 0.0095 3.2E-07 48.7 27.3 224 66-320 35-273 (327)
299 3ei3_A DNA damage-binding prot 97.8 0.029 1E-06 53.8 33.1 288 5-327 549-914 (1158)
300 2xzh_A Clathrin heavy chain 1; 97.6 0.018 6.3E-07 46.2 28.5 189 22-234 76-296 (365)
301 2vpj_A Kelch-like protein 12; 97.5 0.028 9.4E-07 45.1 19.9 184 25-228 16-232 (301)
302 3kya_A Putative phosphatase; s 97.4 0.046 1.6E-06 47.1 27.2 152 69-227 141-341 (496)
303 1bpo_A Protein (clathrin); cla 97.4 0.045 1.5E-06 45.9 28.7 223 24-272 77-331 (494)
304 3pbp_A Nucleoporin NUP82; beta 97.4 0.02 6.7E-07 47.9 17.1 128 43-177 40-208 (452)
305 3s94_A LRP-6, low-density lipo 97.4 0.075 2.5E-06 47.5 31.5 184 126-326 325-510 (619)
306 2vpj_A Kelch-like protein 12; 97.3 0.029 9.8E-07 45.0 17.5 190 116-328 62-280 (301)
307 3ii7_A Kelch-like protein 7; p 97.3 0.051 1.7E-06 43.7 18.6 179 25-228 13-226 (306)
308 3a9g_A Putative uncharacterize 97.2 0.068 2.3E-06 44.1 20.3 147 107-259 30-215 (354)
309 2ism_A Putative oxidoreductase 97.2 0.07 2.4E-06 44.0 26.1 218 67-298 31-327 (352)
310 2ism_A Putative oxidoreductase 97.2 0.072 2.4E-06 43.9 22.3 105 107-215 32-153 (352)
311 3b7f_A Glycosyl hydrolase, BNR 97.1 0.1 3.5E-06 43.7 25.3 183 106-294 177-391 (394)
312 1xi4_A Clathrin heavy chain; a 97.0 0.24 8.2E-06 48.1 21.7 225 22-272 75-331 (1630)
313 3ii7_A Kelch-like protein 7; p 97.0 0.065 2.2E-06 43.0 16.3 190 116-328 55-274 (306)
314 2xn4_A Kelch-like protein 2; s 96.9 0.035 1.2E-06 44.5 14.5 181 25-227 63-276 (302)
315 2xn4_A Kelch-like protein 2; s 96.9 0.1 3.6E-06 41.7 16.8 95 127-228 77-183 (302)
316 3ei3_A DNA damage-binding prot 96.8 0.38 1.3E-05 46.4 33.9 194 117-322 844-1058(1158)
317 3sre_A PON1, serum paraoxonase 96.8 0.16 5.4E-06 41.8 23.4 172 125-313 81-285 (355)
318 3b7f_A Glycosyl hydrolase, BNR 96.8 0.19 6.6E-06 42.0 28.4 218 25-260 23-297 (394)
319 1tl2_A L10, protein (tachylect 96.7 0.12 3.9E-06 39.2 14.8 152 107-273 42-209 (236)
320 1zgk_A Kelch-like ECH-associat 96.7 0.16 5.5E-06 40.8 19.3 183 24-228 25-241 (308)
321 1cru_A Protein (soluble quinop 96.7 0.18 6.1E-06 43.2 17.9 108 107-215 28-162 (454)
322 4asc_A Kelch repeat and BTB do 96.7 0.17 5.7E-06 40.9 18.0 108 114-228 43-175 (315)
323 3das_A Putative oxidoreductase 96.7 0.18 6.3E-06 41.2 17.1 144 148-297 30-213 (347)
324 3pbp_A Nucleoporin NUP82; beta 96.6 0.087 3E-06 44.1 14.2 115 107-223 67-208 (452)
325 1zgk_A Kelch-like ECH-associat 96.6 0.2 6.9E-06 40.2 18.3 190 116-328 70-289 (308)
326 2g8s_A Glucose/sorbosone dehyd 96.5 0.21 7.3E-06 41.1 16.2 150 107-259 19-214 (353)
327 1cru_A Protein (soluble quinop 96.4 0.41 1.4E-05 40.9 20.8 109 150-261 27-163 (454)
328 4asc_A Kelch repeat and BTB do 95.8 0.55 1.9E-05 37.7 15.4 101 120-228 8-127 (315)
329 2zwa_A Leucine carboxyl methyl 95.7 1.2 4.1E-05 40.4 19.7 190 25-228 399-636 (695)
330 2woz_A Kelch repeat and BTB do 95.6 0.72 2.5E-05 37.1 17.9 108 114-228 54-185 (318)
331 2uvk_A YJHT; unknown function, 95.4 0.81 2.8E-05 37.5 15.2 96 116-217 19-128 (357)
332 1tl2_A L10, protein (tachylect 95.4 0.62 2.1E-05 35.3 16.6 107 150-271 41-160 (236)
333 2zwa_A Leucine carboxyl methyl 95.4 1.1 3.8E-05 40.7 17.0 110 115-228 396-523 (695)
334 2xzh_A Clathrin heavy chain 1; 95.2 1 3.5E-05 36.4 24.0 196 7-227 104-332 (365)
335 1xi4_A Clathrin heavy chain; a 95.0 1.3 4.4E-05 43.3 16.4 198 112-330 72-293 (1630)
336 2uvk_A YJHT; unknown function, 94.8 1.4 4.7E-05 36.1 19.8 51 127-179 168-224 (357)
337 3a9g_A Putative uncharacterize 94.2 2 6.8E-05 35.3 25.1 218 67-297 29-323 (354)
338 2woz_A Kelch repeat and BTB do 93.4 2.5 8.5E-05 33.9 16.8 99 120-227 19-136 (318)
339 2g8s_A Glucose/sorbosone dehyd 93.4 2.8 9.5E-05 34.4 26.2 139 67-213 18-214 (353)
340 1sqj_A OXG-RCBH, oligoxylogluc 92.7 6.1 0.00021 36.5 23.6 147 66-217 14-190 (789)
341 3das_A Putative oxidoreductase 92.4 3.8 0.00013 33.5 23.7 109 106-215 32-158 (347)
342 1bpo_A Protein (clathrin); cla 92.3 4.6 0.00016 34.1 24.7 197 6-227 102-331 (494)
343 1sqj_A OXG-RCBH, oligoxylogluc 90.8 10 0.00034 35.1 21.9 164 105-272 14-199 (789)
344 3s25_A Hypothetical 7-bladed b 88.5 8.3 0.00028 30.8 17.1 138 112-273 59-215 (302)
345 2be1_A Serine/threonine-protei 87.7 10 0.00034 30.9 15.3 140 82-224 20-181 (339)
346 3sbq_A Nitrous-oxide reductase 87.6 11 0.00039 33.0 12.1 71 109-181 326-408 (638)
347 2wg3_C Hedgehog-interacting pr 87.5 13 0.00044 31.8 13.3 109 107-216 15-158 (463)
348 2be1_A Serine/threonine-protei 86.6 3.6 0.00012 33.5 8.4 109 118-229 11-132 (339)
349 4gq2_M Nucleoporin NUP120; bet 86.4 17 0.0006 34.3 14.0 38 151-189 237-274 (950)
350 4gq2_M Nucleoporin NUP120; bet 83.7 29 0.001 32.8 14.2 34 106-139 236-269 (950)
351 2cn3_A Xyloglucanase, beta-1,4 83.1 28 0.00095 31.8 28.6 56 10-79 23-84 (737)
352 3a0f_A Xyloglucanase; beta-pro 79.8 37 0.0013 31.2 18.4 147 148-298 19-193 (763)
353 3ott_A Two-component system se 75.1 50 0.0017 30.1 32.2 199 44-266 82-301 (758)
354 3ott_A Two-component system se 74.9 50 0.0017 30.1 33.0 247 45-327 122-402 (758)
355 3sre_A PON1, serum paraoxonase 72.4 38 0.0013 27.7 31.5 180 68-260 51-285 (355)
356 2cn3_A Xyloglucanase, beta-1,4 72.0 59 0.002 29.7 27.3 101 68-171 24-153 (737)
357 3f7f_A Nucleoporin NUP120; nuc 67.3 74 0.0025 28.9 16.9 37 151-190 223-259 (729)
358 4fhn_B Nucleoporin NUP120; pro 67.1 13 0.00045 36.0 7.2 37 153-190 241-277 (1139)
359 4fhn_B Nucleoporin NUP120; pro 63.3 15 0.00053 35.5 6.9 22 307-329 250-271 (1139)
360 3f7f_A Nucleoporin NUP120; nuc 58.7 51 0.0017 29.9 8.7 31 107-139 223-253 (729)
361 3s25_A Hypothetical 7-bladed b 48.7 98 0.0034 24.5 24.3 102 111-227 109-216 (302)
362 3qhy_B Beta-lactamase inhibito 48.4 95 0.0033 24.2 18.0 111 126-251 41-151 (282)
363 3sbq_A Nitrous-oxide reductase 47.5 1.5E+02 0.0052 26.3 18.3 75 151-227 324-408 (638)
364 3a0f_A Xyloglucanase; beta-pro 45.0 1.9E+02 0.0064 26.6 22.8 165 105-272 20-211 (763)
365 3f6k_A Sortilin; protein sorti 44.9 1.8E+02 0.0061 26.4 11.6 65 243-319 92-162 (685)
366 3zwu_A Alkaline phosphatase PH 43.9 1.1E+02 0.0038 27.1 8.4 57 109-167 479-547 (592)
367 1suu_A DNA gyrase subunit A; t 37.0 1.6E+02 0.0054 23.4 21.5 184 25-227 9-231 (312)
368 3no0_A DNA gyrase subunit A; D 35.5 1.6E+02 0.0053 23.0 20.1 150 161-325 79-245 (276)
369 3zwu_A Alkaline phosphatase PH 34.1 1.8E+02 0.0062 25.8 8.3 58 153-214 479-548 (592)
370 1q47_A Semaphorin 3A; beta pro 33.5 1.5E+02 0.0052 25.5 7.6 58 163-222 422-487 (495)
371 4a9v_A PHOX; hydrolase, beta-p 33.5 2.5E+02 0.0087 24.8 9.3 59 107-167 477-547 (592)
372 3uc1_A DNA gyrase subunit A; D 32.6 1.9E+02 0.0066 23.2 24.3 177 42-227 11-228 (327)
373 2zux_A YESW protein; beta-prop 32.0 2.7E+02 0.0091 24.6 21.0 46 83-128 151-202 (591)
374 4hvt_A Ritya.17583.B, post-pro 30.6 3.1E+02 0.011 24.9 25.9 236 69-325 131-429 (711)
375 3al9_A Plexin-A2; beta-propell 28.0 1.9E+02 0.0066 25.2 7.4 68 108-176 402-476 (539)
376 4a9v_A PHOX; hydrolase, beta-p 27.4 3.3E+02 0.011 24.1 9.1 56 242-298 477-543 (592)
377 4gz8_A Semaphorin-3A; multi-do 23.0 2.9E+02 0.0098 25.0 7.6 58 163-222 430-495 (667)
378 3nvq_A Semaphorin-7A; beta-pro 22.4 2.9E+02 0.0099 24.5 7.4 58 119-177 382-445 (590)
379 3uc1_A DNA gyrase subunit A; D 22.2 3E+02 0.01 22.0 21.2 143 24-181 109-279 (327)
380 1zso_A Hypothetical protein; s 22.2 2E+02 0.0068 20.4 5.2 30 110-139 114-143 (164)
381 3qhy_B Beta-lactamase inhibito 21.9 2.8E+02 0.0096 21.5 21.8 174 68-271 25-206 (282)
382 3nvq_A Semaphorin-7A; beta-pro 21.0 3E+02 0.01 24.4 7.2 58 163-222 381-444 (590)
383 1q47_A Semaphorin 3A; beta pro 21.0 3E+02 0.01 23.7 7.1 57 119-176 423-487 (495)
384 4gz8_A Semaphorin-3A; multi-do 21.0 1.6E+02 0.0055 26.5 5.6 49 83-131 430-495 (667)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.9e-48 Score=320.60 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=232.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-------c--ccceEEeEeeecCcEeEEEEcCCC
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-------E--EKNLELLYRMDTAGIFDIKWSPVG 78 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-------~--~~~~~~~~~~~~~~v~~~~~~~~~ 78 (331)
++.++.+++|+|++ .+|++++ ++++++||... . ..........+...|.+++|+|+
T Consensus 29 ~~~~v~~~~fs~dG---~~l~~~s-----------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 93 (344)
T 4gqb_B 29 MERQLEAARYRSDG---ALLLGAS-----------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE- 93 (344)
T ss_dssp CCSEEEEEEECTTS---CEEEEEE-----------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-
T ss_pred ccCCEEEEEECCCC---CEEEEEe-----------CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-
Confidence 45678888888877 8999887 77777776321 1 00122223456788999999998
Q ss_pred CCCCCeEEEEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107 79 GNAGPFLAQADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA 147 (331)
Q Consensus 79 ~~~~~~l~~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 147 (331)
+ .|++|+.||.+ +|++.+++. |...|.+++|+|++++|++|+.|++|++||+++++. +..+.+
T Consensus 94 ---~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~ 167 (344)
T 4gqb_B 94 ---R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRA 167 (344)
T ss_dssp ---T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECC
T ss_pred ---C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcC
Confidence 3 68899999999 999987643 678999999999999999999999999999998754 788999
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
|...|++++|+|++..+|++++.|+.|++||+++++....+.. ..|...+.+++|+|.++.+|++|+.|+.|++||+++
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 9999999999996667899999999999999999987776654 336678999999996778999999999999999998
Q ss_pred CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107 228 ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
. +++.. +..|...|++++|+|++..++++++.|+.+++|++.. + .+..+.+|.+.|++++|+|++. .
T Consensus 247 ~-~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~-~~~~~~~H~~~V~~v~~sp~~~--------~ 313 (344)
T 4gqb_B 247 T-SCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--S-ELFRSQAHRDFVRDATWSPLNH--------S 313 (344)
T ss_dssp ---CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--C-EEEEECCCSSCEEEEEECSSST--------T
T ss_pred C-cEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--C-cEEEEcCCCCCEEEEEEeCCCC--------e
Confidence 6 44544 5789999999999999756677777888889988765 3 3456789999999999999985 6
Q ss_pred EEEEeecCCCeEEEEcCCCccc
Q 020107 308 LVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|+|+| .|++|++|++.+..+
T Consensus 314 llas~s-~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVG-WDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEE-TTSCEEEEECCC---
T ss_pred EEEEEc-CCCeEEEEECCCCCC
Confidence 788999 999999999987643
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=316.70 Aligned_cols=282 Identities=16% Similarity=0.241 Sum_probs=244.2
Q ss_pred ecCcceeEeeecCC-CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE
Q 020107 8 LDGNADAVEFCPQD-SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~-~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+++.+.+|+|+|.. +++.+|++|+ .|+.|+||++..........+.+|...|.+++|+|+ +.+++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs----------~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----~~~l~ 96 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGS----------LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----LPIAA 96 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS----SSEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEc----------CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC----CCEEE
Confidence 45678899998864 2457999999 899999999987653344456889999999999999 89999
Q ss_pred EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 87 QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+++.|+.+ +|++.+.+. +...+.+++|+|++++|++|+.||.|++|++++++. ...+..|...+.+++|+|
T Consensus 97 s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--~~~~~~~~~~v~~~~~sp 174 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--EYSLDTRGKFILSIAYSP 174 (321)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE--EEEEECSSSCEEEEEECT
T ss_pred EEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce--eEEecCCCceEEEEEECC
Confidence 99999999 999987654 456788999999999999999999999999998754 566778888999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
++++|++++.|+.|++||+++++....+.. |...|.+++|+| ++.+|++++.|+.|++||++.. ..... +..|
T Consensus 175 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~-~~~~~-~~~h 247 (321)
T 3ow8_A 175 -DGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHA-NLAGT-LSGH 247 (321)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTC-CEEEE-ECCC
T ss_pred -CCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCc-ceeEE-EcCC
Confidence 889999999999999999999887766665 999999999999 9999999999999999999975 33333 5789
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
...|.+++|+|++ ..+++++.++.+++|++.. ++.+.++.+|...|++++|+|++ ++|++++ .|+.|
T Consensus 248 ~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g---------~~l~s~~-~d~~i 314 (321)
T 3ow8_A 248 ASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNG---------SKIVSVG-DDQEI 314 (321)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTS---------SEEEEEE-TTCCE
T ss_pred CCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCC---------CEEEEEe-CCCeE
Confidence 9999999999997 6788888889999999876 58888999999999999999998 6999999 99999
Q ss_pred EEEcCC
Q 020107 320 RIWMPE 325 (331)
Q Consensus 320 ~iW~~~ 325 (331)
++||..
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999964
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-47 Score=324.16 Aligned_cols=275 Identities=19% Similarity=0.286 Sum_probs=242.8
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+++.+++|+|.+ .+|++|+ .||.|++||+.+++ ....+.+|...|.+++|+|+ +++|++|
T Consensus 108 ~~~V~~~~~~p~~---~~l~s~s----------~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~----~~~l~sg 168 (410)
T 1vyh_C 108 RSPVTRVIFHPVF---SVMVSAS----------EDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS----GKLLASC 168 (410)
T ss_dssp SSCEEEEEECSSS---SEEEEEE----------SSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred CCcEEEEEEcCCC---CEEEEEe----------CCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCC----CCEEEEE
Confidence 3456777777765 8999998 79999999999875 44556889999999999999 8999999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.|+.+ +|++.+.+. |...|.+++|+|++++|++|+.|++|++||++++.. +..+.+|...|.+++|+| +
T Consensus 169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~-~ 245 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQ-D 245 (410)
T ss_dssp ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECT-T
T ss_pred eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCccEEEEEECC-C
Confidence 999999 999987543 678999999999999999999999999999998754 778899999999999998 8
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC--------------------CCEEEEEecCCeEE
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD--------------------SNTLLTGSYDEYLR 221 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~l~~~~~d~~i~ 221 (331)
+.++++++.|+.|++||++++++...+.. |...|.+++|+| + +.+|++|+.|+.|+
T Consensus 246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVATKECKAELRE---HRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeEecC---CCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 89999999999999999999887777766 999999999998 4 56899999999999
Q ss_pred EEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCccc
Q 020107 222 VWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLE 301 (331)
Q Consensus 222 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 301 (331)
+||++++ .++.. +.+|...|.+++|+|++ ..+++++.++.+++|++.. ++.+.++.+|...|++++|+|++
T Consensus 322 iwd~~~~-~~~~~-~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~---- 392 (410)
T 1vyh_C 322 MWDVSTG-MCLMT-LVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDFHKTA---- 392 (410)
T ss_dssp EEETTTT-EEEEE-EECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEEECSSS----
T ss_pred EEECCCC-ceEEE-EECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEcCCC----
Confidence 9999985 44444 57899999999999997 6777888888899999865 57888999999999999999998
Q ss_pred ccccCcEEEEeecCCCeEEEEcC
Q 020107 302 GKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 302 ~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.+|++++ .|++|++|++
T Consensus 393 -----~~l~sgs-~D~~i~vW~~ 409 (410)
T 1vyh_C 393 -----PYVVTGS-VDQTVKVWEC 409 (410)
T ss_dssp -----SCEEEEE-TTSEEEEEC-
T ss_pred -----CEEEEEe-CCCcEEEEeC
Confidence 6999999 9999999986
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.6e-46 Score=309.40 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=234.0
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+.+.+++|+|.+ ++|++|+ .||.|++||+.+.. .......|...|.+++|+|+ +++|++++
T Consensus 56 ~~v~~~~~s~d~---~~l~s~s----------~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~l~s~~ 116 (340)
T 1got_B 56 AKIYAMHWGTDS---RLLLSAS----------QDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS----GNYVACGG 116 (340)
T ss_dssp SCEEEEEECTTS---SEEEEEE----------TTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTT----SSEEEEEE
T ss_pred CceEEEEECCCC---CEEEEEe----------CCCcEEEEECCCCC--cceEeecCCccEEEEEECCC----CCEEEEEe
Confidence 355666676655 8999999 89999999998875 33444778999999999999 99999999
Q ss_pred CCccE-EEecCCCc----------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 90 ADGGL-LRDITGEK----------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 90 ~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
.|+.+ +|++.+.. .|...|.++.|++++. +++++.|+.|++||+++++. +..+.+|...|.+++|+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE--EEEEcCCCCceEEEEEC
Confidence 99999 99987643 2678899999998765 89999999999999998754 77888999999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-e
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-V 237 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~ 237 (331)
| ++.++++|+.|+.|++||++++.....+.. |...|.+++|+| ++++|++++.|++|++||++.. +++.... .
T Consensus 194 ~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~ 267 (340)
T 1got_B 194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTG---HESDINAICFFP-NGNAFATGSDDATCRLFDLRAD-QELMTYSHD 267 (340)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTCSEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEECCT
T ss_pred C-CCCEEEEEeCCCcEEEEECCCCeeEEEEcC---CcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-cEEEEEccC
Confidence 9 789999999999999999999887777766 999999999999 9999999999999999999985 3333311 1
Q ss_pred ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC
Q 020107 238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR 317 (331)
Q Consensus 238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~ 317 (331)
.+...|.+++|+|++ .++++++.++.+++|++.. .+.+..+.+|...|++++|+|++ .+|+|++ .|+
T Consensus 268 ~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~s~dg---------~~l~s~s-~D~ 334 (340)
T 1got_B 268 NIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDG---------MAVATGS-WDS 334 (340)
T ss_dssp TCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTS
T ss_pred CcccceEEEEECCCC-CEEEEECCCCeEEEEEccc--CcEeeEeecCCCcEEEEEEcCCC---------CEEEEEc-CCc
Confidence 233479999999997 6777777888899999876 57788899999999999999998 6999999 999
Q ss_pred eEEEEc
Q 020107 318 LLRIWM 323 (331)
Q Consensus 318 ~i~iW~ 323 (331)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999997
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-46 Score=313.91 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=229.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
++.++.+|+|+|++ .+||+|+.+.. ..-|+.|++|+...... .+......|...|++++|+|+ +. +
T Consensus 41 H~~~V~~v~fSpDG---~~las~s~d~~----~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d----~~-~ 108 (357)
T 4g56_B 41 MEVQIGAVRYRRDG---ALLLAASSLSS----RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE----KG-I 108 (357)
T ss_dssp CCSEEEEEEECSSS---CEEEEEECSSS----SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT----TE-E
T ss_pred ccCCEEEEEECCCC---CEEEEEcCCCC----ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC----CC-E
Confidence 45678889998877 89999982100 00178899999876532 123334578889999999998 54 5
Q ss_pred EEEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107 86 AQADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA 154 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 154 (331)
++++.||.+ +|++.+.+. |...|.+++|+|++++|++|+.||.|++||+++++. +..+.+|...|++
T Consensus 109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~--~~~~~~h~~~v~~ 186 (357)
T 4g56_B 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNC 186 (357)
T ss_dssp EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEE
T ss_pred EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEE
Confidence 567789999 999877542 578899999999999999999999999999998754 7788899999999
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
++|+|.+..++++++.|+.|++||+++++....+.. ..|...+.+++|+|..+.+|++|+.|+.|++||++++ +++..
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~ 264 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQT 264 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEE
Confidence 999996567899999999999999999887665554 3477889999999955789999999999999999985 44443
Q ss_pred eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
+..|...|++++|+|++..++++++.|+.+++|++.. ++.+. ..+|.+.|++++|+|.+. .+|+|+|
T Consensus 265 -~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~-~~~H~~~V~~vafsP~d~--------~~l~s~s- 331 (357)
T 4g56_B 265 -SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFR-DLSHRDFVTGVAWSPLDH--------SKFTTVG- 331 (357)
T ss_dssp -ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEE-ECCCSSCEEEEEECSSST--------TEEEEEE-
T ss_pred -EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeE-ECCCCCCEEEEEEeCCCC--------CEEEEEc-
Confidence 5789999999999999756677777788899998765 45544 458999999999999432 7999999
Q ss_pred CCCeEEEEcCCCc
Q 020107 315 YDRLLRIWMPESD 327 (331)
Q Consensus 315 ~d~~i~iW~~~~~ 327 (331)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999998654
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=307.06 Aligned_cols=289 Identities=17% Similarity=0.238 Sum_probs=233.5
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+.+++|+|.+ ++||+|+ .|+.|+||++...... ......+|...|.+++|+|+ +++|++|+
T Consensus 18 ~v~~l~~sp~g---~~las~~----------~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~l~s~s 80 (345)
T 3fm0_A 18 RCWFLAWNPAG---TLLASCG----------GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC----GNYLASAS 80 (345)
T ss_dssp CEEEEEECTTS---SCEEEEE----------TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT----SSEEEEEE
T ss_pred cEEEEEECCCC---CEEEEEc----------CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC----CCEEEEEE
Confidence 45677887766 8999998 7999999999876422 22234679999999999999 99999999
Q ss_pred CCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEEEeeCC
Q 020107 90 ADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 90 ~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~ 159 (331)
.|+.+ +|++.... .|...|.+++|+|++++|++|+.|+.|++||++++. ...+..+.+|...|.+++|+|
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999 99987643 267899999999999999999999999999998753 344667788999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC--------
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-------- 231 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------- 231 (331)
++.+|++++.|+.|++||.++++....... .+|...|.+++|+| ++++|++++.|++|++||.......
T Consensus 161 -~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 161 -SQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp -SSSCEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred -CCCEEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 788999999999999999987753322222 44999999999999 9999999999999999998543221
Q ss_pred ------ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--cc-----eeEEeecCCcceeeeeecCCCC
Q 020107 232 ------VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--AE-----VLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 232 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
+......|...|++++|+|++ ..+++++.++.+++|+..... .. ......+|...|++++|+|+++
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP 316 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST
T ss_pred CCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc
Confidence 111112378899999999997 778888899999999986532 11 1122358999999999999975
Q ss_pred cccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+|||++ .||+|++|++.++..
T Consensus 317 --------~~laS~s-~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 317 --------GLLASCS-DDGEVAFWKYQRPEG 338 (345)
T ss_dssp --------TEEEEEE-TTSCEEEEEECC---
T ss_pred --------eEEEEcC-CCCcEEEEEecCCCC
Confidence 6999999 999999999987654
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.8e-45 Score=305.39 Aligned_cols=275 Identities=19% Similarity=0.266 Sum_probs=234.8
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+.+.+++|+|.+ .+||+|+ .||.|++||..+.. .......|...|.+++|+|+ +..|++++
T Consensus 65 ~~V~~~~~s~d~---~~l~s~s----------~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp~----g~~lasg~ 125 (354)
T 2pbi_B 65 NKVLCMDWCKDK---RRIVSSS----------QDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAPS----GCAIACGG 125 (354)
T ss_dssp SCEEEEEECTTS---SEEEEEE----------TTSEEEEEETTTCC--EEEEEECSSSCCCEEEECTT----SSEEEEES
T ss_pred CeEEEEEECCCC---CEEEEEe----------CCCeEEEEECCCCC--cceEEecCCCCEEEEEECCC----CCEEEEee
Confidence 346677777655 8999999 89999999988765 33444678889999999999 99999999
Q ss_pred CCccE-EEecCCCc------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 90 ADGGL-LRDITGEK------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 90 ~dg~i-iw~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
.|+.+ +|++.... .|...|.+++|+|+++.|++++.|++|++||+++++. +..+.+|...|.+++
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCLD 203 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEE
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEE
Confidence 99999 99876431 2678899999999999999999999999999998754 788899999999999
Q ss_pred eCCC-CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 157 FDVH-QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 157 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
|+|. ++++|++|+.||.|++||++++++...+.. |...|++++|+| ++.+|++++.|++|++||++.. ..+...
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~-~~~~~~ 278 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET---HESDVNSVRYYP-SGDAFASGSDDATCRLYDLRAD-REVAIY 278 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 9874 357999999999999999999987777766 999999999999 9999999999999999999975 333321
Q ss_pred e-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 236 S-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 236 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
. ..+...+.+++|+|++ ..+++++.++.+++|++.. ++.+..+.+|...|++++|+|++ ++|++++
T Consensus 279 ~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h~~~v~~l~~spdg---------~~l~sgs- 345 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRVSPDG---------TAFCSGS- 345 (354)
T ss_dssp CCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTS---------SCEEEEE-
T ss_pred cCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCC--CceEEEEECCCCcEEEEEECCCC---------CEEEEEc-
Confidence 1 1233478999999997 6777777888999999876 57788899999999999999999 6999999
Q ss_pred CCCeEEEEc
Q 020107 315 YDRLLRIWM 323 (331)
Q Consensus 315 ~d~~i~iW~ 323 (331)
.|++|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
No 8
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.8e-44 Score=301.89 Aligned_cols=286 Identities=14% Similarity=0.180 Sum_probs=229.2
Q ss_pred CcceeEeeec--CCC-CCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-----ceEEeEeeecCcEeEEEEcCCCCCC
Q 020107 10 GNADAVEFCP--QDS-YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-----NLELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 10 ~~~~~v~~~~--~~~-~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
..+.+|+|.+ ..+ ++++||+|+ .|+.|++|++...+. .....+.+|...|.+++|+|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs----------~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---- 87 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGS----------RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---- 87 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEE----------TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----
T ss_pred hhhhheeeEEEeecCCCCCEEEEEc----------CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----
Confidence 3456676622 122 558999999 799999999975431 233445789999999999999
Q ss_pred CCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107 82 GPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA 154 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 154 (331)
+.+|++++.|+.+ +|++.+.+. |...|.+++|+|++++|++++.|+.|++||+.............|...|.+
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 8999999999999 999987653 788999999999999999999999999999975332222222368889999
Q ss_pred EeeCCCC---------CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107 155 TSFDVHQ---------PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 155 ~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~ 225 (331)
++|+|.. ..++++++.|+.|++||.+ .+....+.. |...|.+++|+| ++++|++|+.|+.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~---h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKA---HESNVNHLSISP-NGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTCEEEEEES
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcC---ccccceEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 9999843 2689999999999999943 333444544 999999999999 9999999999999999999
Q ss_pred cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------cCCcceeeeeec
Q 020107 226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-----------KHGSLAYGADWQ 294 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~h~~~v~~~~~~ 294 (331)
+....+... ..+...|.+++|+|+ +.+++++.++++++|++.......+..+. +|...|++++|+
T Consensus 243 ~~~~~~~~~--~~~~~~v~~v~~sp~--~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 243 LNLTYPQRE--FDAGSTINQIAFNPK--LQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCCSSCSEE--EECSSCEEEEEECSS--SCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CCCccccee--ecCCCcEEEEEECCC--CCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 665455554 456778999999999 55677888999999998764333333443 688899999999
Q ss_pred CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|++ ++|++|+ .||.|++|+++++.
T Consensus 319 p~g---------~~l~sg~-~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 319 ALG---------KKLFAGF-TDGVIRTFSFETSA 342 (343)
T ss_dssp SSS---------CCEEEEE-TTSEEEEEEEEEEE
T ss_pred CCC---------CeEEEec-CCceEEEEEEEccC
Confidence 999 6999999 99999999998764
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-44 Score=297.89 Aligned_cols=279 Identities=14% Similarity=0.265 Sum_probs=233.1
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
.+.+.+++|+|..+ ++|++|+ .|+.|++|++...... ....+.+|...|.+++|+|+ +++|
T Consensus 17 ~~~V~~l~~~~~~~--~~l~s~s----------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----g~~l 80 (319)
T 3frx_A 17 NGWVTSLATSAGQP--NLLLSAS----------RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----GAYA 80 (319)
T ss_dssp SSCEEEEEECSSCT--TEEEEEE----------TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT----SSEE
T ss_pred cceEEEEEccCCCc--cEEEEec----------CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC----CCEE
Confidence 34566777777554 7999999 8999999999754321 23345789999999999999 9999
Q ss_pred EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
++++.|+.+ +|++.+++. |...|.+++|+|++++|++|+.|+.|++||++.. .+..+.+|...|.+++|.
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVV 157 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEc
Confidence 999999999 999988654 7889999999999999999999999999999753 366778899999999999
Q ss_pred CC-----CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCce
Q 020107 159 VH-----QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 159 ~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 233 (331)
|. ++..+++++.|+.|++||+++.+....+.. |...|.+++|+| ++.+|++++.|+.|++||+++. +++.
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~-~~~~ 232 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAK-KAMY 232 (319)
T ss_dssp CC------CCEEEEEETTSCEEEEETTTTEEEEEECC---CCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEE
T ss_pred cCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC---CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-cEEE
Confidence 84 234899999999999999998876666655 999999999999 9999999999999999999985 4455
Q ss_pred eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--------cCCcceeeeeecCCCCccccccc
Q 020107 234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--------KHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
. ..+...|.+++|+|+ +.+++++.++++++|++... ..+..+. .|...+.+++|+|++
T Consensus 233 ~--~~~~~~v~~~~~sp~--~~~la~~~~~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-------- 298 (319)
T 3frx_A 233 T--LSAQDEVFSLAFSPN--RYWLAAATATGIKVFSLDPQ--YLVDDLRPEFAGYSKAAEPHAVSLAWSADG-------- 298 (319)
T ss_dssp E--EECCSCEEEEEECSS--SSEEEEEETTEEEEEEETTE--EEEEEECCCCTTCCGGGCCCEEEEEECTTS--------
T ss_pred E--ecCCCcEEEEEEcCC--CCEEEEEcCCCcEEEEeCcC--eeeeccCccccccccCcCcceeEEEECCCC--------
Confidence 4 455678999999999 55667777888999998763 4444443 346679999999999
Q ss_pred CcEEEEeecCCCeEEEEcCCCc
Q 020107 306 NSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 306 ~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++|++++ .|+.|++||+.++
T Consensus 299 -~~l~sg~-~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 -QTLFAGY-TDNVIRVWQVMTA 318 (319)
T ss_dssp -SEEEEEE-TTSCEEEEEEEEC
T ss_pred -CEEEEee-cCceEEEEEEeec
Confidence 7999999 9999999998764
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-43 Score=291.59 Aligned_cols=282 Identities=13% Similarity=0.182 Sum_probs=237.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+|+|+|.+ ++|++|+ .||.|++||+.+.. .......|..+|.+++|+|+ +++|++|
T Consensus 13 ~~~V~~~~fsp~~---~~l~s~~----------~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~l~s~ 73 (304)
T 2ynn_A 13 SDRVKGIDFHPTE---PWVLTTL----------YSGRVELWNYETQV--EVRSIQVTETPVRAGKFIAR----KNWIIVG 73 (304)
T ss_dssp CSCEEEEEECSSS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG----GTEEEEE
T ss_pred CCceEEEEECCCC---CEEEEEc----------CCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCC----CCEEEEE
Confidence 4567778887776 8999998 79999999998875 33444778999999999999 8999999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.|+.+ +|++.+++. |...|.+++|+|++++|++|+.|++|++||++++. .....+.+|...|.+++|+|.+
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTC
T ss_pred CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCC
Confidence 999999 999987654 78899999999999999999999999999998764 3456788999999999999977
Q ss_pred CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 162 PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 162 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
+..|++|+.|+.|++||+++......+.. .|...+..+.|+|. ++.+|++++.|++|++||+++. +++.. +..|.
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~-~~~h~ 228 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-LEGHM 228 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEE-EECCS
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-cccee-eCCCC
Confidence 88999999999999999988765544442 36788999999873 5679999999999999999985 44444 57899
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEEEeecCCCeE
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATCSFYDRLL 319 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~~d~~i 319 (331)
..|.+++|+|++ ..+++++.|+.+++|++.. .+.+.++..|...+++++|+|++. . ++++++ |..+
T Consensus 229 ~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~asg~--~~g~ 295 (304)
T 2ynn_A 229 SNVSFAVFHPTL-PIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGR--------KNYIASGF--DNGF 295 (304)
T ss_dssp SCEEEEEECSSS-SEEEEEETTSCEEEEETTT--CCEEEEECCSSSSEEEEEECTTCG--------GGCEEEEE--TTEE
T ss_pred CCEEEEEECCCC-CEEEEEcCCCeEEEEECCC--CceeeeccCCCccEEEEEECCCCC--------ceEEEEec--CCce
Confidence 999999999997 6777888888999999876 578889999999999999999874 3 577776 6778
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
.+|++.+.
T Consensus 296 ~~~~~~~~ 303 (304)
T 2ynn_A 296 TVLSLGND 303 (304)
T ss_dssp EEEECC--
T ss_pred EEEEeccC
Confidence 88887653
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-44 Score=295.69 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=218.6
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-ee-ecCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RM-DTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.+++|+| ++||+|+ .|+.|++|++........... .. |...|.+++|+|+ +++|++
T Consensus 15 ~~v~~~~~s~-----~~las~~----------~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las 75 (330)
T 2hes_X 15 EKIWSFDFSQ-----GILATGS----------TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----TSLLAA 75 (330)
T ss_dssp SCEEEEEEET-----TEEEEEE----------SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT----SSEEEE
T ss_pred CceeeeccCC-----CEEEEEc----------CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC----CCEEEE
Confidence 4556666654 3899998 799999999987532222222 33 8999999999999 899999
Q ss_pred EcCCccE-EEecCCC-------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc--ceeeeeeeecccce
Q 020107 88 ADADGGL-LRDITGE-------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES--QLEVLQQWKAHEFE 151 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~ 151 (331)
++.|+.+ +|++... ..|...|.+++|+|++++|++|+.|++|++||++.. ..+.+..+.+|...
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 9999999 9998431 236788999999999999999999999999999532 23456778899999
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC--ceeeeecccCCCcceEEEEEecCC--CCEEEEEecCCeEEEEEecC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESP--FKLAFQNSKIHKMGVCCIASIPSD--SNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 227 (331)
|.+++|+| ++.+|++++.|+.|++||.+++. +...+.. |...|.+++|+| + +.+|++++.|++|++||++.
T Consensus 156 v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 156 VKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEE
T ss_pred eEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecC
Confidence 99999999 78999999999999999998763 3444444 999999999999 6 67899999999999999976
Q ss_pred CCC-------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE-eecCCc-ceeeeeecC--C
Q 020107 228 ISK-------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET-YAKHGS-LAYGADWQR--G 296 (331)
Q Consensus 228 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~-~v~~~~~~~--~ 296 (331)
... ....+...|...|++++|+++ +.+++++.++.+++|+......+.... ..+|.. .|.+++|+| +
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC----
T ss_pred CCccccceeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCC
Confidence 421 111111238899999999977 688888899999999987532233333 357887 899999999 4
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+ ++|++++ .||+|++|++++
T Consensus 309 ~---------~~las~s-~Dg~v~~W~~~~ 328 (330)
T 2hes_X 309 K---------TILATGG-DDGIVNFWSLEK 328 (330)
T ss_dssp ----------CCEEEEE-TTSEEEEEEC--
T ss_pred c---------eEEEEec-CCCcEEEEEecc
Confidence 5 6999999 999999999875
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-44 Score=304.37 Aligned_cols=281 Identities=17% Similarity=0.250 Sum_probs=231.9
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+++|+|.+ ++||+|+ .||+|++||+.+.+ .......|...|.+++|+|+ +++|++|
T Consensus 66 ~~~V~~~~~sp~~---~~l~s~s----------~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~----g~~las~ 126 (380)
T 3iz6_a 66 SGKVYSLDWTPEK---NWIVSAS----------QDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPN----GQSVACG 126 (380)
T ss_dssp SSCEEEEEECTTS---SCEEEEE----------TTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTT----SSEEEEC
T ss_pred ccEEEEEEEcCCC---CEEEEEe----------CCCeEEEEECCCCc--cceEEecCCCCEEEEEECCC----CCEEEEe
Confidence 3456777777765 8999999 79999999998875 44455789999999999999 9999999
Q ss_pred cCCccE-EEecCCC-------------cccCccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeee-----ecc
Q 020107 89 DADGGL-LRDITGE-------------KISSSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQW-----KAH 148 (331)
Q Consensus 89 ~~dg~i-iw~~~~~-------------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~ 148 (331)
+.|+.+ +|++... ..|...+.++.|.|++ ..|++|+.|++|++||+++++. +..+ .+|
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h 204 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGH 204 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--EEEECCCSSSSC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--EEEeecccCCCC
Confidence 999999 9998642 2367788899999975 5699999999999999998764 4444 578
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
...|.+++|+|.++++|++|+.|+.|++||++. .+....+.. |...|.+++|+| ++.+|++++.|++|++||+++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC
Confidence 899999999887889999999999999999984 344555555 999999999999 999999999999999999998
Q ss_pred CCCCceeeee------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe----ecCCcceeeeeecCCC
Q 020107 228 ISKPVNETSV------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY----AKHGSLAYGADWQRGR 297 (331)
Q Consensus 228 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~ 297 (331)
+ .++..... .+...|++++|+|++ ..+++++.++.+++|++.. ++.+..+ .+|.+.|++++|+|++
T Consensus 281 ~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 281 G-HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp T-EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTT--CCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred C-cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCC--CceEEEEecccCCCCCceEEEEECCCC
Confidence 5 33332111 122348999999997 6777777888899999866 4555555 5799999999999999
Q ss_pred CcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 298 SSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+|+||+ .|++|++|++....
T Consensus 357 ---------~~l~sgs-~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 357 ---------SALCTGS-WDKNLKIWAFSGHR 377 (380)
T ss_dssp ---------SEEEEEC-TTSCEEEEECCSSS
T ss_pred ---------CEEEEee-CCCCEEEEecCCCc
Confidence 6999999 99999999998764
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-42 Score=294.53 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=233.7
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec------------------CcE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT------------------AGI 69 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~------------------~~v 69 (331)
+...+.+++|+|++ ++||+|+ ++.+++|++.++. .+..+ ..|. ..|
T Consensus 63 h~~~V~~v~fspdg---~~la~g~-----------~~~v~i~~~~~g~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v 126 (393)
T 1erj_A 63 HTSVVCCVKFSNDG---EYLATGC-----------NKTTQVYRVSDGS-LVARL-SDDSAANKDPENLNTSSSPSSDLYI 126 (393)
T ss_dssp CSSCCCEEEECTTS---SEEEEEC-----------BSCEEEEETTTCC-EEEEE-CC-----------------CCCCBE
T ss_pred CCCEEEEEEECCCC---CEEEEEc-----------CCcEEEEEecCCC-EEEEe-cCccccccccccccccccCCCceeE
Confidence 55678889998876 8999987 7899999998765 22222 2222 249
Q ss_pred eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107 70 FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 142 (331)
++++|+|+ +++|++|+.|+.+ +|++.+.+. |...|.+++|+|+++.|++++.|++|++||+++++. .
T Consensus 127 ~~v~~s~d----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~ 200 (393)
T 1erj_A 127 RSVCFSPD----GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--S 200 (393)
T ss_dssp EEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--E
T ss_pred EEEEECCC----CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--E
Confidence 99999999 9999999999999 999987653 788999999999999999999999999999998754 4
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----ccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN----SKIHKMGVCCIASIPSDSNTLLTGSYDE 218 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 218 (331)
..+. +...+.+++|+|.++.++++++.|+.|++||++++.....+.. ..+|...|.+++|+| ++.+|++++.|+
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~ 278 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR 278 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCC
Confidence 4444 5567999999987889999999999999999998876555521 134899999999999 999999999999
Q ss_pred eEEEEEecCCCC----------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107 219 YLRVWDVRSISK----------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 219 ~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
.|++||+++... .....+.+|...|.+++|+|++ ..+++++.++.+++|++.. ++.+..+.+|...|
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~--~~~~~~l~~h~~~v 355 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSV 355 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTT--CCEEEEEECCSSCE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCC--CeEEEEECCCCCCE
Confidence 999999986422 1122346799999999999996 6777777888889998776 57888899999999
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+++|++... .++++++|+|++ .||+|++|++.+.
T Consensus 356 ~~v~~~~~~~---~~p~~~~l~sgs-~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 356 ISVAVANGSS---LGPEYNVFATGS-GDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECSSCT---TCTTCEEEEEEE-TTSEEEEEEEEEC
T ss_pred EEEEecCCcC---cCCCCCEEEEEC-CCCcEEECccccc
Confidence 9999987531 223447999999 9999999998654
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-42 Score=285.47 Aligned_cols=249 Identities=17% Similarity=0.240 Sum_probs=216.6
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|.+.|++++|+|+ +++|++++.||.+ +|++.+... |..+|.+++|+|++++|++|+.|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~----~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPT----EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eEEeecCCCCceEEEEECCC----CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 45567899999999999999 9999999999999 999987643 678899999999999999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeeecccCCCcceEEEEEecCCCC
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
+||+.+++. +..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.. ...+.. |...|.+++|+|.++.
T Consensus 81 vwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 81 VFNYNTGEK--VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMCVAFNPKDPS 154 (304)
T ss_dssp EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECC---CCSCEEEEEECTTCTT
T ss_pred EEECCCCcE--EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcc---cCCcEEEEEECCCCCC
Confidence 999998754 778899999999999999 788999999999999999997743 333444 9999999999996678
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCcccceeEEeecCCcce
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
+|++|+.|++|++||++.. .+.......|...+..+.|+|..+ .++++++.++.+++|++.. ++.+.++.+|...|
T Consensus 155 ~l~sgs~D~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--KSCVATLEGHMSNV 231 (304)
T ss_dssp EEEEEETTSEEEEEETTCS-SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCC-CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC--CccceeeCCCCCCE
Confidence 9999999999999999875 444443456778899999998432 5677777888899999876 58889999999999
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
..++|+|++ .+|++++ .||+|++||+.++.+
T Consensus 232 ~~~~~~p~~---------~~l~s~s-~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 232 SFAVFHPTL---------PIIISGS-EDGTLKIWNSSTYKV 262 (304)
T ss_dssp EEEEECSSS---------SEEEEEE-TTSCEEEEETTTCCE
T ss_pred EEEEECCCC---------CEEEEEc-CCCeEEEEECCCCce
Confidence 999999998 6999999 999999999987653
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-42 Score=310.24 Aligned_cols=286 Identities=16% Similarity=0.278 Sum_probs=231.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.+++|+|.++ .+|++|+ .|+.|++||....+ ....+.+|...|++++|+|+ +++|++++
T Consensus 148 ~~v~~v~f~p~~~--~~l~s~s----------~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fspd----g~~las~s 209 (611)
T 1nr0_A 148 RAMNSVDFKPSRP--FRIISGS----------DDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPD----GSLFASTG 209 (611)
T ss_dssp SCEEEEEECSSSS--CEEEEEE----------TTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred CCceEEEECCCCC--eEEEEEe----------CCCeEEEEECCCCe--EeeeeccccCceEEEEECCC----CCEEEEEE
Confidence 4567888888763 4799998 79999999987764 44556889999999999999 99999999
Q ss_pred CCccE-EEecCCCc-------------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee---------------
Q 020107 90 ADGGL-LRDITGEK-------------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE--------------- 140 (331)
Q Consensus 90 ~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------- 140 (331)
.|+.+ +|++.+++ .|...|.+++|+|++++|++++.|++|++||+.+++..
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 99999 99976542 47789999999999999999999999999999875421
Q ss_pred --------------------------eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec----
Q 020107 141 --------------------------VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---- 190 (331)
Q Consensus 141 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 190 (331)
....+.+|...|++++|+| ++++|++++.|+.|++||+.++.....+..
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 1234457889999999999 889999999999999999987643221100
Q ss_pred ---------------------------------------------------------------------------ccCCC
Q 020107 191 ---------------------------------------------------------------------------SKIHK 195 (331)
Q Consensus 191 ---------------------------------------------------------------------------~~~~~ 195 (331)
...|.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 00123
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA 275 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
..+.+++|+| ++++|++|+.|++|++||+......... ...|...|++++|+|++ .++++++.++.+++|++... +
T Consensus 449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~-~~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~-~ 524 (611)
T 1nr0_A 449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANN-F 524 (611)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGT-T
T ss_pred CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeee-ccCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCC-C
Confidence 4578899999 9999999999999999999874211112 26799999999999997 77888888899999998753 2
Q ss_pred ceeEE--eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 276 EVLET--YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 276 ~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+.... +.+|...|++++|+|++ ++||+++ .|++|++|+++++.
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg---------~~lasgs-~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDN---------VRLATGS-LDNSVIVWNMNKPS 569 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTCTT
T ss_pred ceeeeeeeeecccceeEEEECCCC---------CEEEEEE-CCCcEEEEECCCcc
Confidence 33332 34599999999999999 7999999 99999999998753
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.6e-42 Score=286.18 Aligned_cols=282 Identities=16% Similarity=0.234 Sum_probs=233.7
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
.+.|.+|+|+|..+ ++||+|+ .||+|+|||+...+.. ....+.+|...|.+++|+|+ +++|
T Consensus 38 ~~~V~~v~~sp~~~--~~l~S~s----------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----g~~l 101 (340)
T 4aow_A 38 NGWVTQIATTPQFP--DMILSAS----------RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----GQFA 101 (340)
T ss_dssp SSCEEEEEECTTCT--TEEEEEE----------TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT----SSEE
T ss_pred cCCEEEEEEeCCCC--CEEEEEc----------CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC----CCEE
Confidence 34567788887654 7999999 7999999999865422 33445789999999999999 9999
Q ss_pred EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
++++.|+.+ +|+...... +...+..+.++++++.|++++.|+.+++||+.... .......+|...+..++|+
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-KYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSSCSSCEEEEEEC
T ss_pred EEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-eEEEEeccccCcccceEEc
Confidence 999999999 898877544 46678888999999999999999999999987654 3345566789999999998
Q ss_pred CCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee
Q 020107 159 VHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV 237 (331)
Q Consensus 159 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 237 (331)
+.. ..++++++.|+.|++||+++++....+.. |...|++++|+| ++++|++|+.|+.|++||+++. +++.. .
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~-~~~~~--~ 253 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG-KHLYT--L 253 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTT-EEEEE--E
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecC---CCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccC-ceeee--e
Confidence 743 35788999999999999999887766665 999999999999 9999999999999999999985 45554 5
Q ss_pred ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE---------EeecCCcceeeeeecCCCCcccccccCcE
Q 020107 238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE---------TYAKHGSLAYGADWQRGRSSLEGKRKNSL 308 (331)
Q Consensus 238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 308 (331)
.+...|.+++|+|+ +.+++++.++.+++|++... ..+. ...+|...|++++|+|++ ++
T Consensus 254 ~~~~~v~~~~~~~~--~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~ 320 (340)
T 4aow_A 254 DGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGK--IIVDELKQEVISTSSKAEPPQCTSLAWSADG---------QT 320 (340)
T ss_dssp ECSSCEEEEEECSS--SSEEEEEETTEEEEEETTTT--EEEEEECCC-------CCCCCEEEEEECTTS---------SE
T ss_pred cCCceEEeeecCCC--CceeeccCCCEEEEEECCCC--eEEEeccccceeeeccCCCCCEEEEEECCCC---------CE
Confidence 66788999999998 67888889999999998753 3332 234788999999999998 69
Q ss_pred EEEeecCCCeEEEEcCCCcc
Q 020107 309 VATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 309 l~s~~~~d~~i~iW~~~~~~ 328 (331)
|++|+ .||.|+|||+++|.
T Consensus 321 l~sgs-~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGY-TDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEE-TTSCEEEEEEEC--
T ss_pred EEEEe-CCCEEEEEeCCCcC
Confidence 99999 99999999999885
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-41 Score=281.39 Aligned_cols=278 Identities=19% Similarity=0.304 Sum_probs=232.0
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.+++|+|.+ ++||+|+ .||.|++|++.+.+ ......+|...|.+++|+|+ +++|++++
T Consensus 24 ~~v~~~~~s~~~---~~l~s~~----------~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~~ 84 (312)
T 4ery_A 24 KAVSSVKFSPNG---EWLASSS----------ADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD----SNLLVSAS 84 (312)
T ss_dssp SCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred CcEEEEEECCCC---CEEEEee----------CCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCC----CCEEEEEC
Confidence 346667777655 8999998 79999999998775 44556789999999999999 89999999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.|+.+ +|++.+.+. |...|.+++|+|++++|++|+.||.|++||+++++. +..+..|..+|.+++|+| ++
T Consensus 85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~ 161 (312)
T 4ery_A 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNR-DG 161 (312)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECT-TS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE--EEEecCCCCcEEEEEEcC-CC
Confidence 99999 999987653 678899999999999999999999999999998754 677888999999999998 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
.++++++.|+.|++||+++++....+.. .+...+..++|+| ++.+|++++.|+.|++||+++. +.+.. +..|...
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~-~~~~~~~ 236 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKG-KCLKT-YTGHKNE 236 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTT-EEEEE-ECSSCCS
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC-cEEEE-EEecCCc
Confidence 9999999999999999998876555432 3677899999999 9999999999999999999985 33333 3455544
Q ss_pred eE--EEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec-CCCeE
Q 020107 243 VW--RIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF-YDRLL 319 (331)
Q Consensus 243 v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-~d~~i 319 (331)
+. ...+++.+...+++++.++.+++|++.. ++.+..+.+|...|.+++|+|++ .+|++++. .|++|
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~~~~~d~~i 305 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQGHTDVVISTACHPTE---------NIIASAALENDKTI 305 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEECCCSSCEEEEEECSSS---------SEEEEEECTTTCCE
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhhccCCcEEEEeecCcC---------CceEEEEccCCccE
Confidence 32 2345544436777777888899999876 57888999999999999999998 68888751 49999
Q ss_pred EEEcCC
Q 020107 320 RIWMPE 325 (331)
Q Consensus 320 ~iW~~~ 325 (331)
++|+.+
T Consensus 306 ~~W~~d 311 (312)
T 4ery_A 306 KLWKSD 311 (312)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999975
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-42 Score=310.73 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=234.2
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+|+|+|.+ ++||+++ ++.|++|++.+.. ....+.+|...|++++|+|+ +++||+|
T Consensus 18 ~g~~~~~~~spdg---~~l~~~~-----------~~~v~l~~~~~~~--~~~~~~~h~~~v~~~~~spd----g~~lasg 77 (611)
T 1nr0_A 18 RGTAVVLGNTPAG---DKIQYCN-----------GTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS----GYYCASG 77 (611)
T ss_dssp TTCCCCCEECTTS---SEEEEEE-----------TTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred cCceeEEeeCCCC---CEEEeCC-----------CCEEEEecCCCcc--cCeEecCCCCceEEEEECCC----CcEEEEE
Confidence 5678889998877 8999997 7799999998664 44556889999999999999 9999999
Q ss_pred cCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEE
Q 020107 89 DADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+.||.+ +|++.+.+ .|...|.+++|+|+++.|++++.+ +.|++||.. + ....+.+|...|+++
T Consensus 78 ~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~--~~~~l~gh~~~v~~v 153 (611)
T 1nr0_A 78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--T--SNGNLTGQARAMNSV 153 (611)
T ss_dssp ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--C--BCBCCCCCSSCEEEE
T ss_pred eCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--C--CcceecCCCCCceEE
Confidence 999999 99986432 267899999999999999998865 478888853 2 356788999999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
+|+|+....|++++.|++|++||.++++....+.. |...|.+++|+| ++++|++++.|++|++||++++ +....+
T Consensus 154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g-~~~~~~ 228 (611)
T 1nr0_A 154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG-TKTGVF 228 (611)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC-CEEEEC
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc---ccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC-cEeeee
Confidence 99995445799999999999999988766666655 999999999999 9999999999999999999875 333331
Q ss_pred ee------ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----------------------------------
Q 020107 236 SV------CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----------------------------------- 274 (331)
Q Consensus 236 ~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 274 (331)
.. .|.+.|.+++|+|++ ..+++++.|+.+++|++....
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred ccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 12 799999999999997 677888888889999986421
Q ss_pred ------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 275 ------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 275 ------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++....+.+|...|++++|+|++ ++|++++ .|++|++||+.++.
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg---------~~l~s~s-~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADG---------KTLFSAD-AEGHINSWDISTGI 357 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTTCC
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCC---------CEEEEEe-CCCcEEEEECCCCc
Confidence 11234556899999999999998 7999999 99999999998764
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.6e-43 Score=300.84 Aligned_cols=288 Identities=17% Similarity=0.227 Sum_probs=225.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
++..+.+|+|+|..+ ++||+|+ .||.|+|||+...+........+|.+.|++|+|+|.+ +.+|++
T Consensus 118 ~~~~V~~l~~~P~~~--~~lasGs----------~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~---~~~l~s 182 (435)
T 4e54_B 118 FDRRATSLAWHPTHP--STVAVGS----------KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN---TNQFYA 182 (435)
T ss_dssp CSSCEEEEEECSSCT--TCEEEEE----------TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC---TTEEEE
T ss_pred CCCCEEEEEEeCCCC--CEEEEEe----------CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC---CCEEEE
Confidence 455689999999765 7999999 8999999999877634444456899999999999853 779999
Q ss_pred EcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 88 ADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
++.||++ +|++.+... +...+.+++|+|++++|++|+.||.|++||++.. .+..+.+|...|++++|+
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEEC
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeec
Confidence 9999999 999986543 2455788999999999999999999999999753 356778899999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
|....++++++.|+.|++||+++.+....+....+|...|++++|+| ++.+|++++.|+.|++||++++..+... ..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~--~~ 336 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGL--IP 336 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEE--CC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEE--ec
Confidence 96667899999999999999998776655544456999999999999 9999999999999999999986443332 33
Q ss_pred cCC------ceEEEEECCCCCCeEEEEEe------------cCcEEEEEEcCcccceeEEee-cCCcceeee-eecCCCC
Q 020107 239 LGG------GVWRIKHHPFIPGLVLAACM------------HNGFAVVKVGGEKAEVLETYA-KHGSLAYGA-DWQRGRS 298 (331)
Q Consensus 239 ~~~------~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~~~~~ 298 (331)
|.. .+....|+|++ ..+++++. ++.+++|+... ++.+..+. +|...|.++ +|+|++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--g~~~~~l~~~~~~~v~s~~~fspdg- 412 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--GKMMCQLYDPESSGISSLNEFNPMG- 412 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSS--CCEEEEECCSSCCCCCCEEEECTTS-
T ss_pred ccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCC--CcEEEEEeCCCCCcEEEEEEECCCC-
Confidence 322 23456677765 33444332 23467777655 56666654 688889887 699998
Q ss_pred cccccccCcEEEEeecCCCeEEEEcCCCcccC
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMPESDCLT 330 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~~ 330 (331)
.+|++|+ |+.|+||+++++...
T Consensus 413 --------~~lasg~--d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 413 --------DTLASAM--GYHILIWSQQEARTR 434 (435)
T ss_dssp --------SCEEEEC--SSEEEECCCC-----
T ss_pred --------CEEEEEc--CCcEEEEECCcCeee
Confidence 6888875 889999999988643
No 20
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.9e-41 Score=305.56 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=229.0
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---ceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---NLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
.+.+.+|+|+|.++ ++|++|+ .||.|++|++..... .....+.+|...|.+++|+|+ +++|
T Consensus 382 ~~~V~~v~~~~~~~--~~l~s~s----------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----g~~l 445 (694)
T 3dm0_A 382 TDMVTAIATPIDNA--DIIVSAS----------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----GQFA 445 (694)
T ss_dssp SSCEEEEECCTTCC--SEEEEEE----------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT----SSEE
T ss_pred CceeEEEEecCCCC--CEEEEEe----------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC----CCEE
Confidence 44566777776543 7999999 899999999976432 133455789999999999999 9999
Q ss_pred EEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee-eeeecccceeEEEee
Q 020107 86 AQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL-QQWKAHEFELWATSF 157 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~ 157 (331)
++|+.||.+ +|++.+... |...|.+++|+|+++.|++++.|++|++||........+ ....+|...|.+++|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 999999999 999987643 788999999999999999999999999999865432111 122468889999999
Q ss_pred CCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 158 DVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 158 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+|+. ...+++++.|+.|++||+++.+....+.. |...|++++|+| ++++|++++.|+.|++||++++ +.+..
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~-~~~~~-- 598 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEG-KKLYS-- 598 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTT-EEEEC--
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC-ceEEE--
Confidence 9843 35899999999999999998887766665 999999999999 9999999999999999999985 44444
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-------------------CcceeeeeecCCC
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-------------------GSLAYGADWQRGR 297 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------------------~~~v~~~~~~~~~ 297 (331)
..+...|.+++|+|+ +.+++++.++++++|++... +.+..+..+ ...+++++|+|++
T Consensus 599 ~~~~~~v~~~~~sp~--~~~l~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 599 LEANSVIHALCFSPN--RYWLCAATEHGIKIWDLESK--SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp CBCSSCEEEEEECSS--SSEEEEEETTEEEEEETTTT--EEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred ecCCCcEEEEEEcCC--CcEEEEEcCCCEEEEECCCC--CChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 456778999999999 66777888899999998763 444444322 1237899999999
Q ss_pred CcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 298 SSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++|++|+ .||.|++|++..
T Consensus 675 ---------~~l~sgs-~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 675 ---------STLFSGY-TDGVIRVWGIGR 693 (694)
T ss_dssp ---------SEEEEEE-TTSEEEEEEC--
T ss_pred ---------CEEEEEc-CCCeEEEEeccC
Confidence 7999999 999999999863
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-40 Score=278.17 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=236.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+++|+|.+ ++|++|+ .||.|++||+.+.+ ....+.+|...|.+++|+|+ +++|+++
T Consensus 32 ~~~v~~~~~s~~~---~~l~~~~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~ 92 (369)
T 3zwl_B 32 ERPLTQVKYNKEG---DLLFSCS----------KDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF----TKYCVTG 92 (369)
T ss_dssp SSCEEEEEECTTS---CEEEEEE----------SSSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred eceEEEEEEcCCC---CEEEEEe----------CCCEEEEEeCCCch--hhhhhhhcCCcEEEEEEcCC----CCEEEEE
Confidence 4456677777655 8999998 79999999998875 44455789999999999999 8999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccce---------eeeeeeecc
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQL---------EVLQQWKAH 148 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~---------~~~~~~~~~ 148 (331)
+.||.+ +|++.+.+. +...+.+++|+|+++.+++++.+ |.|++||+..... .....+..|
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 999999 999987654 57889999999999999999998 9999999987532 123344555
Q ss_pred cc--eeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107 149 EF--ELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 149 ~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~ 225 (331)
.. .+.+++|+| +++++++++.||.|++||+++ .+....+.. |...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 173 ~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 173 EGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSP-DLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp TTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred cCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECC-CCCEEEEecCCceEEEEEC
Confidence 55 899999999 788999999999999999998 555555655 899999999999 9999999999999999999
Q ss_pred cCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--------------cEEEEEEcCcccceeEEeecCCcceeee
Q 020107 226 RSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN--------------GFAVVKVGGEKAEVLETYAKHGSLAYGA 291 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 291 (331)
++. +.+.. ..+...+..++|+|++ ..+++++.++ .+++|++.. ++.+..+.+|...|+++
T Consensus 248 ~~~-~~~~~--~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 248 STL-QVLKK--YETDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--EEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp TTC-CEEEE--EECSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTT--CCEEEEEECCSSCEEEE
T ss_pred CCC-ceeee--ecCCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCC--CcchhheecccCcEEEE
Confidence 985 44554 4588999999999997 6666666666 567777665 57888899999999999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|+|++ ++|++++ .||.|++|+++++.+
T Consensus 322 ~~s~~~---------~~l~s~~-~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 322 AISPQG---------TSYASGG-EDGFIRLHHFEKSYF 349 (369)
T ss_dssp EECTTS---------SEEEEEE-TTSEEEEEEECHHHH
T ss_pred EECCCC---------CEEEEEc-CCCeEEEEECccccc
Confidence 999998 6999999 999999999987643
No 22
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-42 Score=290.44 Aligned_cols=289 Identities=11% Similarity=0.091 Sum_probs=220.5
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+++.+++|+|.+ ++||+|+ .||.|++|++.+........+.+|...|.+++|+|+ +++|++
T Consensus 10 ~~~~v~~~~~s~~g---~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s 72 (377)
T 3dwl_C 10 LPKPSYEHAFNSQR---TEFVTTT----------ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----SNRIVT 72 (377)
T ss_dssp CSSCCSCCEECSSS---SEEECCC----------SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----TCCEEE
T ss_pred CCCcEEEEEECCCC---CEEEEec----------CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----CCEEEE
Confidence 46789999999976 8999997 799999999997631233345789999999999999 899999
Q ss_pred EcCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc-eeeeeeeec-ccceeEEE
Q 020107 88 ADADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ-LEVLQQWKA-HEFELWAT 155 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~-~~~~v~~~ 155 (331)
++.|+.+ +|++.+.. .|...|.+++|+|+++.|++++.|+.|++||+++++ ......+.. |...|+++
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999 99998765 267899999999999999999999999999998864 123556666 99999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCc---------------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeE
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPF---------------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 220 (331)
+|+| ++++|++++.|+.|++||++.... ....... .|...|.+++|+| ++++|++++.|+.|
T Consensus 153 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 153 DWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSV 229 (377)
T ss_dssp EECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEE
T ss_pred EEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcE
Confidence 9999 789999999999999999963221 1111112 4899999999999 99999999999999
Q ss_pred EEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccce---------------------
Q 020107 221 RVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEV--------------------- 277 (331)
Q Consensus 221 ~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 277 (331)
++||+++...+. ...+..|...|.+++|+|+ +.+++++.++++.+|+......+.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANE--SAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEET--TEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCC--CCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccc
Confidence 999999875421 2225789999999999999 567777888888787765321000
Q ss_pred ----e---------EEe----------------ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 278 ----L---------ETY----------------AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 278 ----~---------~~~----------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
. ..+ ..|...|+++.+.+... .....|+|+| .||.|++||+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~-----~~~~~~~s~g-~Dg~i~iWdl 377 (377)
T 3dwl_C 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP-----GNITAFTSSG-TDGRVVLWTL 377 (377)
T ss_dssp CCCC-------------------------CCCSSSCSSCEEEEEEEEEET-----TEEEEEEEEE-TTSEEEEECC
T ss_pred ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC-----CceEEEEeec-CCCcEEEecC
Confidence 0 111 12999999999877542 0012699999 9999999986
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-41 Score=286.43 Aligned_cols=245 Identities=16% Similarity=0.216 Sum_probs=218.6
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
..+.+|..+|++++|+|+ +.+|++|+.||.+ +|++.+++. |...|.+++|+|++++|++|+.|++|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~----~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp CEEECCSSCEEEEEECSS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred EeecccCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 345789999999999999 8999999999999 999987654 67899999999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
|+.+.+ .+..+.+|...|.+++|+| +++++++++.|+.|++||++++.+...+.. |...|.++.++| ++.+|+
T Consensus 178 d~~~~~--~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~-~g~~l~ 250 (410)
T 1vyh_C 178 DFQGFE--CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQ-DGTLIA 250 (410)
T ss_dssp ETTSSC--EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECT-TSSEEE
T ss_pred eCCCCc--eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeC---CCccEEEEEECC-CCCEEE
Confidence 998764 4778889999999999999 789999999999999999999988777776 999999999999 999999
Q ss_pred EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC-------------------CCeEEEEEecCcEEEEEEcCc
Q 020107 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI-------------------PGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+|+.|+.|++||+++. ..... +..|...|.+++|+|+. ...+++++.++.+++|++..
T Consensus 251 s~s~D~~v~vwd~~~~-~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~- 327 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATK-ECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST- 327 (410)
T ss_dssp EEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-
T ss_pred EEcCCCeEEEEECCCC-ceeeE-ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-
Confidence 9999999999999885 33333 57899999999999963 24677777888899999876
Q ss_pred ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 274 KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 274 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+..+.++.+|...|++++|+|++ ++|++++ .|+.|++||+.++..
T Consensus 328 -~~~~~~~~~h~~~v~~v~~~~~g---------~~l~s~s-~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 328 -GMCLMTLVGHDNWVRGVLFHSGG---------KFILSCA-DDKTLRVWDYKNKRC 372 (410)
T ss_dssp -TEEEEEEECCSSCEEEEEECSSS---------SCEEEEE-TTTEEEEECCTTSCC
T ss_pred -CceEEEEECCCCcEEEEEEcCCC---------CEEEEEe-CCCeEEEEECCCCce
Confidence 57888999999999999999998 6999999 999999999987643
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-40 Score=294.74 Aligned_cols=268 Identities=19% Similarity=0.358 Sum_probs=228.5
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.+++|+|.+ ++|++++ .||.|++|++.... +.. ..+|...|.+++|+|+ +++|++++
T Consensus 304 ~~v~~~~~~~~~---~~l~t~~----------~d~~i~~w~~~~~~--~~~-~~~~~~~v~~~~~s~~----g~~l~~~~ 363 (577)
T 2ymu_A 304 SSVWGVAFSPDG---QTIASAS----------DDKTVKLWNRNGQH--LQT-LTGHSSSVWGVAFSPD----GQTIASAS 363 (577)
T ss_dssp SCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTSCE--EEE-ECCCSSCEEEEEECTT----SSEEEEEE
T ss_pred CCeEEEEECCCC---CEEEEEe----------CCCeEEEEeCCCCe--eEE-EeCCCCCEEEEEECCC----CCEEEEEe
Confidence 455667777665 8999998 79999999987653 444 3678999999999999 99999999
Q ss_pred CCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107 90 ADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH 163 (331)
Q Consensus 90 ~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (331)
.||.+ +|+..... .|...|.+++|+|++++|++++.|+.|++||.. + +.+..+.+|...|++++|+| ++.
T Consensus 364 ~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~--~~~~~~~~~~~~v~~~~~s~-d~~ 439 (577)
T 2ymu_A 364 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVWGVAFSP-DDQ 439 (577)
T ss_dssp TTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C--CEEEEEECCSSCEEEEEECT-TSS
T ss_pred CCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C--CEEEEecCCCCCeEEEEECC-CCC
Confidence 99999 99975432 267889999999999999999999999999964 3 33677889999999999999 789
Q ss_pred EEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 243 (331)
+|++++.|+.|++||.. ++....+.. |...|.+++|+| ++.+|++++.|+.|++||... +.+.. +..|...|
T Consensus 440 ~l~~~~~d~~v~~w~~~-~~~~~~~~~---~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~~~--~~~~~-~~~h~~~v 511 (577)
T 2ymu_A 440 TIASASDDKTVKLWNRN-GQLLQTLTG---HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG--QLLQT-LTGHSSSV 511 (577)
T ss_dssp EEEEEETTSEEEEEETT-SCEEEEEEC---CSSCEEEEEECT-TSCEEEEEETTSEEEEEETTS--CEEEE-EECCSSCE
T ss_pred EEEEEcCCCEEEEEECC-CCEEEEEcC---CCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcCCC--CEEEE-EeCCCCCE
Confidence 99999999999999975 444555555 999999999999 999999999999999999642 34443 57899999
Q ss_pred EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
++++|+|++ .++++++.++.+++|+. .++.+.++.+|.+.|++++|+|++ ++|+|++ .|++|++||
T Consensus 512 ~~l~~s~dg-~~l~s~~~dg~v~lwd~---~~~~~~~~~~h~~~v~~~~fs~dg---------~~l~s~~-~D~~i~~Wd 577 (577)
T 2ymu_A 512 RGVAFSPDG-QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDG---------QTIASAS-SDKTVKLWN 577 (577)
T ss_dssp EEEEECTTS-SCEEEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTSCEEEEC
T ss_pred EEEEEcCCC-CEEEEEECcCEEEEEeC---CCCEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-CCCEEEEeC
Confidence 999999997 66777777777777773 368889999999999999999998 7999999 999999997
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-40 Score=281.68 Aligned_cols=288 Identities=13% Similarity=0.095 Sum_probs=233.6
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
.+.++.+++|+|.+ ++||+|+ .+|.|++|++.+.+......+.+|...|.+++|+|+ +++|++
T Consensus 7 ~~~~i~~~~~s~~~---~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~ 69 (372)
T 1k8k_C 7 LVEPISCHAWNKDR---TQIAICP----------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----SNRIVT 69 (372)
T ss_dssp CSSCCCEEEECTTS---SEEEEEC----------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----TTEEEE
T ss_pred cCCCeEEEEECCCC---CEEEEEe----------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC----CCEEEE
Confidence 56789999999876 8999997 699999999988742244445789999999999999 899999
Q ss_pred EcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-e-eeeeecccceeEEEe
Q 020107 88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-V-LQQWKAHEFELWATS 156 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~-~~~~~~~~~~v~~~~ 156 (331)
++.||.+ +|++.+.+ .+...|.+++|+|++++|++++.||.|++||++.++.. . ......|...|.+++
T Consensus 70 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred EcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 9999999 99997764 26788999999999999999999999999999886521 1 222356788999999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEcc------------------CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIR------------------ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE 218 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 218 (331)
|+| +++++++++.|+.|++||++ .++....+.. |...|.+++|+| ++.+|++++.|+
T Consensus 150 ~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~ 224 (372)
T 1k8k_C 150 WHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSA-NGSRVAWVSHDS 224 (372)
T ss_dssp ECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECS-SSSEEEEEETTT
T ss_pred EcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECC-CCCEEEEEeCCC
Confidence 999 78999999999999999964 3444444444 899999999999 999999999999
Q ss_pred eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC--cc----------------------
Q 020107 219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG--EK---------------------- 274 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------------- 274 (331)
.|++||+++. +++.. +..|..+|.+++|+|+ +.+++++.++.+++|++.. ..
T Consensus 225 ~i~i~d~~~~-~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 225 TVCLADADKK-MAVAT-LASETLPLLAVTFITE--SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp EEEEEEGGGT-TEEEE-EECSSCCEEEEEEEET--TEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred EEEEEECCCC-ceeEE-EccCCCCeEEEEEecC--CCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 9999999985 44444 5788889999999999 5667777999999999977 21
Q ss_pred --------ccee------EEe-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 275 --------AEVL------ETY-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 275 --------~~~~------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++.. ..+ .+|...|++++|.+... .++.+|+|++ .||.|++|++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-----~~~~~l~s~~-~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTG-MDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEE-TTSEEEEEEHHHH
T ss_pred hhhhcccccccccCccccccccccccCCcceeEEecCCC-----cceeeEEEec-CCCceEEEEecCh
Confidence 1111 223 48999999999774430 0114999999 9999999998764
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-41 Score=284.51 Aligned_cols=262 Identities=15% Similarity=0.185 Sum_probs=199.7
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC------CccE-EEecCCCcc----------c
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA------DGGL-LRDITGEKI----------S 104 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i-iw~~~~~~~----------~ 104 (331)
.+.....|++.... ...|...|++++|+|+ +++|++++. |+.+ +|+...... |
T Consensus 24 g~~~~~~w~~p~~~------p~~H~~~V~~v~fSpD----G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~ 93 (357)
T 4g56_B 24 GSSKGSAWGRPVTA------PACMEVQIGAVRYRRD----GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT 93 (357)
T ss_dssp ----------------------CCCSEEEEEEECSS----SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC
T ss_pred CCccccccCCCCCC------cccccCCEEEEEECCC----CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC
Confidence 36778899876543 2469999999999999 999999998 5566 887765432 5
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee--eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ--QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
...|.+++|+|++. +++++.||+|++||+.+++..... ...+|...|++++|+| ++++|++++.|+.|++||++++
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC
Confidence 67799999999875 556788999999999887543332 3447899999999999 8899999999999999999998
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
+....+.. |...|++++|+|....++++++.|+.|++||+++++.........+...+.+++|+|++..++++++.+
T Consensus 172 ~~~~~~~~---h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d 248 (357)
T 4g56_B 172 AVLKSYNA---HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET 248 (357)
T ss_dssp EEEEEECC---CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred cEEEEEcC---CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence 87777766 999999999999444689999999999999999864333322345778899999999876677777788
Q ss_pred CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+.+++|++.. ++.+.++.+|...|++++|+|++. ++||+++ .|++|+|||++++.+
T Consensus 249 ~~i~~wd~~~--~~~~~~~~~~~~~v~~l~~sp~~~--------~~lasgs-~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 249 GNVSLVNIKN--PDSAQTSAVHSQNITGLAYSYHSS--------PFLASIS-EDCTVAVLDADFSEV 304 (357)
T ss_dssp SCEEEEESSC--GGGCEEECCCSSCEEEEEECSSSS--------CCEEEEE-TTSCEEEECTTSCEE
T ss_pred cceeEEECCC--CcEeEEEeccceeEEEEEEcCCCC--------CEEEEEe-CCCEEEEEECCCCcE
Confidence 8899999887 578889999999999999999985 6899999 999999999988754
No 27
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=278.40 Aligned_cols=291 Identities=17% Similarity=0.279 Sum_probs=231.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCC---CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSR---NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~---~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
+...+.+++|+|.++ .++++|+ . ||.|++|++.+.+ ........|...|.+++|+|+.++ +.+
T Consensus 17 h~~~v~~~~~~p~~~--~l~~~~s----------~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~~ 82 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA--KFVTMGN----------FARGTGVIQLYEIQHGD-LKLLREIEKAKPIKCGTFGATSLQ-QRY 82 (357)
T ss_dssp CSSCEEEEEECTTSS--EEEEEEC------------CCCEEEEEEEECSSS-EEEEEEEEESSCEEEEECTTCCTT-TCC
T ss_pred CCCceEEEEEcCCCc--eEEEecC----------ccCCCcEEEEEeCCCCc-ccceeeecccCcEEEEEEcCCCCC-Cce
Confidence 455788888988774 5677776 4 8999999999875 333334578999999999998322 479
Q ss_pred EEEEcCCccE-EEecCCCc-------ccCccEEEEE------EcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107 85 LAQADADGGL-LRDITGEK-------ISSSMCLCLE------WNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF 150 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~-------~~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 150 (331)
|++++.||.+ +|++.+.+ .|...|.++. |+|+++.|++++.||.|++||+++++ .++..+..|..
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~ 161 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-DPVANMEPVQG 161 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-SCSEEECCCTT
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-CcceeccccCC
Confidence 9999999999 99998765 2678899995 46889999999999999999999865 13555554443
Q ss_pred ----eeEEEe----eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC--CCCEEEEEecCCeE
Q 020107 151 ----ELWATS----FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS--DSNTLLTGSYDEYL 220 (331)
Q Consensus 151 ----~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i 220 (331)
.+.+++ |+| ++.++++++.|+.|++||+++++.... .. |...|.+++|+|. ++.+|++++.|+.|
T Consensus 162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TN---IKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EE---CSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cC---CCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 788888 677 789999999999999999998875333 33 7899999999985 57899999999999
Q ss_pred EEEEecCCCCCceee----eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc-----------------ceeE
Q 020107 221 RVWDVRSISKPVNET----SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA-----------------EVLE 279 (331)
Q Consensus 221 ~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 279 (331)
++||+++. .+.... ...|...|++++|+|++..++++++.++.+++|++..... +.+.
T Consensus 237 ~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 237 HVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 99999985 333321 2379999999999999733677888888999999975321 4677
Q ss_pred EeecCCcceeeeeecCCCCcccccccCcEEE-EeecCCCeEEEEcCCCccc
Q 020107 280 TYAKHGSLAYGADWQRGRSSLEGKRKNSLVA-TCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 280 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~~d~~i~iW~~~~~~~ 329 (331)
.+.+|...|++++|+|++ ++|+ +++ .|+.|++|++.+..+
T Consensus 316 ~~~~~~~~v~~~~~s~~~---------~~l~~s~~-~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDK---------RGLCVCSS-FDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEECSSS---------TTEEEEEE-TTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEcCCC---------CeEEEEec-CCCcEEEEECCCccc
Confidence 888999999999999999 5676 899 999999999987643
No 28
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=289.42 Aligned_cols=302 Identities=15% Similarity=0.200 Sum_probs=242.2
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.+++|+|.+. .+||+|.+......+.+.||.|++|++.............|...|++++|+|+ +.+|+++
T Consensus 12 ~~~v~~~~~sp~g~--~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~ 85 (416)
T 2pm9_A 12 FSRTATFAWSHDKI--PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN----NKIIAGA 85 (416)
T ss_dssp EEESCBCCBCSSSS--CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS----SSCEEEE
T ss_pred hhhcceEeeCCCCC--CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC----CCeEEEE
Confidence 34678889988863 49999943221111112799999999987652111112358889999999999 8999999
Q ss_pred cCCccE-EEecCC----Cc------ccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccc------e-eeeeeeeccc
Q 020107 89 DADGGL-LRDITG----EK------ISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQ------L-EVLQQWKAHE 149 (331)
Q Consensus 89 ~~dg~i-iw~~~~----~~------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~-~~~~~~~~~~ 149 (331)
+.||.+ +|++.. .. .|...|.+++|+|+ +++|++++.||.|++||+.+++ . .....+..|.
T Consensus 86 ~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165 (416)
T ss_dssp ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred ccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence 999999 999987 21 26788999999998 8899999999999999998865 2 1122346788
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEecCC---eEEEE
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVW 223 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iw 223 (331)
..|.+++|+|+.+.++++++.|+.|++||+++++....+... .+|...|.+++|+|....++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 999999999954889999999999999999998776666551 112788999999993347999999998 99999
Q ss_pred EecCCCCCceeeee-ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107 224 DVRSISKPVNETSV-CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 224 d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
|+++...++.. +. .|...|.+++|+|....++++++.++.+++|++.. ++.+..+.+|...|++++|+|+++
T Consensus 246 d~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~---- 318 (416)
T 2pm9_A 246 DLRNANTPLQT-LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--AEQLSQFPARGNWCFKTKFAPEAP---- 318 (416)
T ss_dssp ETTSTTSCSBC-CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS--CCEEEEEECSSSCCCCEEECTTCT----
T ss_pred eCCCCCCCcEE-eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC--CccceeecCCCCceEEEEECCCCC----
Confidence 99986555555 34 79999999999993337788888888889998876 578889999999999999999985
Q ss_pred cccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+|++++ .|+.|++|++.+..
T Consensus 319 ----~~l~s~~-~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 319 ----DLFACAS-FDNKIEVQTLQNLT 339 (416)
T ss_dssp ----TEEEECC-SSSEEEEEESCCCC
T ss_pred ----CEEEEEe-cCCcEEEEEccCCC
Confidence 6999999 99999999998764
No 29
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=275.51 Aligned_cols=242 Identities=13% Similarity=0.103 Sum_probs=199.6
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
..+..+.+++|+|.+ .|++|+ .||.|+|||+.+++.. ......+|...|++++|+|+ +++
T Consensus 80 ~~~~~v~~~~~s~d~----~l~~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd----g~~ 141 (344)
T 4gqb_B 80 QTEAGVADLTWVGER----GILVAS----------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS----GTQ 141 (344)
T ss_dssp EESSCEEEEEEETTT----EEEEEE----------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT----SSE
T ss_pred ccCCCEEEEEEeCCC----eEEEEE----------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC----CCE
Confidence 345678999999864 677777 7999999999887532 23344579999999999999 999
Q ss_pred EEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 85 LAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
|++|+.|+.+ +|++.+.+. |...|.+++|++++. .|++++.|++|++||+++++.........+...+.+++
T Consensus 142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 9999999999 999988654 788999999999885 57899999999999999876533223345666799999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC-CEEEEEecCCeEEEEEecCCCCCceee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS-NTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
|+|.+++++++|+.||.|++||+++++.+..+.. |...|++++|+| ++ .+|++|+.|++|++||+++. +.+.
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~-~~~~-- 294 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLS-ELFR-- 294 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---CSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCC-EEEE--
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCC-cEEE--
Confidence 9997788999999999999999999988888777 999999999999 65 68999999999999999875 4333
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
..+|.+.|++++|+|+++.++++++.|+.+++|++...
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 47899999999999998566667778999999998763
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=275.07 Aligned_cols=250 Identities=16% Similarity=0.230 Sum_probs=211.7
Q ss_pred eEeeecC-cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeE
Q 020107 61 LYRMDTA-GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSV 129 (331)
Q Consensus 61 ~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i 129 (331)
.+.+|.. .|++++|+|+ +++|++|+.|+.+ +|++.+.. .|...|.+++|+|++++|++|+.|+.|
T Consensus 10 ~~~~h~~~~v~~l~~sp~----g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPA----GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EECCSTTSCEEEEEECTT----SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eecCCCCCcEEEEEECCC----CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 3467877 8999999999 9999999999999 99987652 367899999999999999999999999
Q ss_pred EEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
++|++..+....+..+.+|...|.+++|+| ++++|++++.|+.|++||++++.....+.....|...|.+++|+| ++.
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~ 163 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQE 163 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSS
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCC
Confidence 999998876667788899999999999999 889999999999999999988754433333345999999999999 999
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-------------cc
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-------------AE 276 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 276 (331)
+|++++.|+.|++||.+.........+..|...|++++|+|++ ..+++++.|+.+++|+..... .+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 9999999999999999875322223357899999999999997 778888888999999974321 23
Q ss_pred eeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 277 VLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 277 ~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+.++.+ |...|++++|+|++ ..|++++ .|+.|++|+.+.+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~---------~~l~s~~-~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLT---------GALATAC-GDDAIRVFQEDPN 284 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTT---------CCEEEEE-TTSCEEEEEECTT
T ss_pred eeEEecCCCCCcEEEEEEecCC---------CEEEEEe-CCCeEEEEEeCCC
Confidence 3445555 88999999999998 6999999 9999999998654
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=275.18 Aligned_cols=245 Identities=13% Similarity=0.202 Sum_probs=211.9
Q ss_pred EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
..+|.+.|++++|+|+...++.+|++|+.|+.+ +|++...+ .|...|.+++|++++..+++++.|+.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 357999999999998632226799999999999 99987543 367899999999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
|+.+++. +..+..+...+.+++|+| ++++|++++.|+.|++||+++++....+.. |...|.+++|+| ++++|+
T Consensus 108 d~~~~~~--~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~---~~~~v~~~~~sp-dg~~la 180 (321)
T 3ow8_A 108 DLENGKQ--IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT---RGKFILSIAYSP-DGKYLA 180 (321)
T ss_dssp ETTTTEE--EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEEC---SSSCEEEEEECT-TSSEEE
T ss_pred ECCCCCE--EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecC---CCceEEEEEECC-CCCEEE
Confidence 9998754 677888888999999999 889999999999999999999887766666 888999999999 999999
Q ss_pred EEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107 213 TGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 292 (331)
+|+.|+.|++||++++ +++.. +..|..+|.+++|+|++ .++++++.++.+++|++.. .+...++.+|...|++++
T Consensus 181 sg~~dg~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 181 SGAIDGIINIFDIATG-KLLHT-LEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQH--ANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp EEETTSCEEEEETTTT-EEEEE-ECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTT--CCEEEEECCCSSCEEEEE
T ss_pred EEcCCCeEEEEECCCC-cEEEE-EcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCC--cceeEEEcCCCCceEEEE
Confidence 9999999999999985 44443 57899999999999996 6777777888899999876 577888999999999999
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|+|++ .+|++++ .|++|++||+.++.
T Consensus 256 ~sp~~---------~~l~s~s-~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 256 FCPDD---------THFVSSS-SDKSVKVWDVGTRT 281 (321)
T ss_dssp ECTTS---------SEEEEEE-TTSCEEEEETTTTE
T ss_pred ECCCC---------CEEEEEe-CCCcEEEEeCCCCE
Confidence 99998 6999999 99999999998764
No 32
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=291.52 Aligned_cols=305 Identities=13% Similarity=0.146 Sum_probs=225.8
Q ss_pred eeeecCcceeEeeecCCCC------CcEEEEEeecccC---------CCCCCCCCcEEEEeccCcccce--EEeEeeecC
Q 020107 5 HCELDGNADAVEFCPQDSY------HHVLAASTYTLQE---------GDKPSRNGSISLFNVNAEEKNL--ELLYRMDTA 67 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~------~~~la~g~~~~~~---------~~~~~~~g~i~vw~~~~~~~~~--~~~~~~~~~ 67 (331)
.+.+.+.+.+|+|+|..+. +++||+|++.... -.+++.|++|+||++...+... ......|.+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~ 208 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG 208 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence 4456889999999998632 2799998854211 1234579999999998765222 123456778
Q ss_pred cEeEEEEcCCC---CCCCCeEEEEcCCccE-EEecCCCc-----------------ccCccEEEEEEcCCCCeEEEEecC
Q 020107 68 GIFDIKWSPVG---GNAGPFLAQADADGGL-LRDITGEK-----------------ISSSMCLCLEWNPSATSITVGLSD 126 (331)
Q Consensus 68 ~v~~~~~~~~~---~~~~~~l~~~~~dg~i-iw~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~~d 126 (331)
.|.+++|+|+. +. +.+||+++.||++ +|++.... .|...|.+++|+++ ..|++|+.|
T Consensus 209 ~V~~v~wsp~~~~~~~-~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D 286 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHL-VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN 286 (524)
T ss_dssp SEEEEEECSSCCCSSS-SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred cEEEEEECCCCCCCCC-CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence 89999999961 11 4699999999999 99997542 24678999999986 489999999
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEE--eeCCCCC-cEEEEEcCCCeEEEEEccCCCceeeeecccCCC--cceEEE
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWAT--SFDVHQP-HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK--MGVCCI 201 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~ 201 (331)
|+|++||++++. .+...+.+|...|+++ +|+| ++ ++|++++.|++|++||+++++....+.. |. ..|.++
T Consensus 287 gtV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~---~~~~~~v~~v 361 (524)
T 2j04_B 287 GFVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVS---RFRGSNLVPV 361 (524)
T ss_dssp SEEEEEETTBCS-SCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEE---ECSCCSCCCE
T ss_pred CEEEEEECCCCC-CceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccc---ccccCcccce
Confidence 999999998764 2355678899999999 5676 65 8999999999999999998876666554 44 358899
Q ss_pred EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--------
Q 020107 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-------- 273 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 273 (331)
+|+| ++..+++++.|++|++||+++.. .+.. +.+|.+.|++++|+|++ ..+++++.|+.+++|++...
T Consensus 362 ~fsp-~~~~l~s~~~d~tv~lwd~~~~~-~~~~-l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~ 437 (524)
T 2j04_B 362 VYCP-QIYSYIYSDGASSLRAVPSRAAF-AVHP-LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNS 437 (524)
T ss_dssp EEET-TTTEEEEECSSSEEEEEETTCTT-CCEE-EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC---
T ss_pred EeCC-CcCeEEEeCCCCcEEEEECcccc-ccee-eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccC
Confidence 9999 88899999999999999999863 3333 47899999999999997 56777777777776642110
Q ss_pred ----------------------------------ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 274 ----------------------------------KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 274 ----------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
++..+.++.+|...|++++|+|++ +.+.++|+|+ .||.|
T Consensus 438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~------~~~~~lAsg~-~~g~v 510 (524)
T 2j04_B 438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS------AGGKCYAFSN-SAGLL 510 (524)
T ss_dssp ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST------TTTTEEEEEC-TTSEE
T ss_pred ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC------CccHHHHhhc-cCceE
Confidence 022344566789999999999996 1125899999 99999
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
+||++.-.
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998643
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-39 Score=269.81 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=232.2
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEe-EeeecCcEeEEEEcCCCCCCCC
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELL-YRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
.+...+.+++|+|.+ ++|++++ +|.|++|++...... +... ...|...|.+++|+|+ ++
T Consensus 49 ~h~~~v~~~~~~~~~---~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~ 110 (337)
T 1gxr_A 49 NHGEVVCAVTISNPT---RHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GC 110 (337)
T ss_dssp CCSSCCCEEEECSSS---SEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SS
T ss_pred cCCCceEEEEEecCC---cEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC----CC
Confidence 356678888888876 8999986 999999999875421 2222 1268889999999999 89
Q ss_pred eEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEE
Q 020107 84 FLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWA 154 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~ 154 (331)
+|++++.||.+ +|++.+.+. +...+.+++|+|+++.+++++.||.|++||+++++ .+..+..|...+.+
T Consensus 111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASC 188 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEE
Confidence 99999999999 999987652 56789999999999999999999999999999874 47778889999999
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
++|+| +++.+++++.|+.|++||+++++....+. +...+.+++|+| ++.+|++++.|+.|++||+++. ....
T Consensus 189 ~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~-~~~~- 260 (337)
T 1gxr_A 189 IDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKP-DKYQ- 260 (337)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSS-CEEE-
T ss_pred EEECC-CCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC-CeEE-
Confidence 99999 78999999999999999999887665554 688899999999 9999999999999999999985 3332
Q ss_pred eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
...|...|.+++|+|++ ..+++++.++.+++|++... +.+. ...|...|++++|+|++ ++|++++
T Consensus 261 -~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~--~~~~-~~~~~~~v~~~~~s~~~---------~~l~~~~- 325 (337)
T 1gxr_A 261 -LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYG--ASIF-QSKESSSVLSCDISVDD---------KYIVTGS- 325 (337)
T ss_dssp -ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--CEEE-EEECSSCEEEEEECTTS---------CEEEEEE-
T ss_pred -EcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCC--eEEE-EecCCCcEEEEEECCCC---------CEEEEec-
Confidence 47899999999999997 67777777888899998763 4443 34578899999999998 6999999
Q ss_pred CCCeEEEEcC
Q 020107 315 YDRLLRIWMP 324 (331)
Q Consensus 315 ~d~~i~iW~~ 324 (331)
.||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999996
No 34
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.8e-40 Score=281.89 Aligned_cols=303 Identities=15% Similarity=0.244 Sum_probs=244.7
Q ss_pred eeeeecCcceeEeeecCCCC-------CcEEEEEeecccCCCCCCCCCcEEEEecc------------------------
Q 020107 4 AHCELDGNADAVEFCPQDSY-------HHVLAASTYTLQEGDKPSRNGSISLFNVN------------------------ 52 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~-------~~~la~g~~~~~~~~~~~~~g~i~vw~~~------------------------ 52 (331)
.++.++.|..++.|+|..+. ..+|++|+|... ..+.|.++++.
T Consensus 40 ~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~------~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~ 113 (430)
T 2xyi_A 40 MTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD------EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFG 113 (430)
T ss_dssp EEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS------SCEEEEEEEEEEC----------------------
T ss_pred hhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC------CCCEEEEEEEECCCCcccccccccccccccccccc
Confidence 45678899999999998631 257999997533 36678888654
Q ss_pred Ccccce-EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------c------ccCccEEEEEEc
Q 020107 53 AEEKNL-ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------K------ISSSMCLCLEWN 114 (331)
Q Consensus 53 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~------~~~~~v~~~~~~ 114 (331)
.....+ ......|.+.|++++|+|++ +.+|++++.+|.+ +|++... . .|...+.+++|+
T Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 190 (430)
T 2xyi_A 114 SVCGKIEIEIKINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 190 (430)
T ss_dssp ----CEEEEEEEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC
T ss_pred CCCCceEEEEEEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC
Confidence 000012 23346789999999999973 5699999999999 9999761 1 267789999999
Q ss_pred CCCC-eEEEEecCCeEEEEEccccc-----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC---ce
Q 020107 115 PSAT-SITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP---FK 185 (331)
Q Consensus 115 ~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~ 185 (331)
|+++ +|++|+.||.|++|++..+. ..+...+..|...|.+++|+|.++.+|++++.|+.|++||++++. ..
T Consensus 191 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 9998 89999999999999998732 122456678999999999999778899999999999999999873 34
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
..+.. |...|++++|+|....+|++|+.||.|++||+++...++.. +..|...|.+++|+|+++.++++++.++.+
T Consensus 271 ~~~~~---~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~-~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 271 HTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp EEEEC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-EECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred eEeec---CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE-eecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 44444 99999999999933347999999999999999986566655 567999999999999986678888889999
Q ss_pred EEEEEcCcc------------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 266 AVVKVGGEK------------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 266 ~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++|++.... .+.+..+.+|...|++++|+|+++ .+|++++ .||.|++|++.+..
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--------~~l~s~s-~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------WIICSVS-EDNIMQVWQMAENV 412 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--------TEEEEEE-TTSEEEEEEECHHH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--------CEEEEEE-CCCCEEEeEccccc
Confidence 999997632 267788889999999999999984 4899999 99999999997654
No 35
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-39 Score=277.68 Aligned_cols=262 Identities=19% Similarity=0.286 Sum_probs=219.9
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWN 114 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~ 114 (331)
.+|.|++|++.++. ........|...|.+++|+|+ +++|++++.||.+ +|++.+.+. |...|.+++|
T Consensus 111 ~d~~v~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 184 (401)
T 4aez_A 111 LERNVYVWNADSGS-VSALAETDESTYVASVKWSHD----GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW- 184 (401)
T ss_dssp ETTEEEEEETTTCC-EEEEEECCTTCCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-
T ss_pred CCCeEEEeeCCCCc-EeEeeecCCCCCEEEEEECCC----CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-
Confidence 49999999999876 344443447889999999999 8999999999999 999987653 6889999999
Q ss_pred CCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH 194 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 194 (331)
+++.|++++.||.|++||++... ..+..+.+|...|.+++|+| ++.+|++++.|+.|++||+++++....+.. |
T Consensus 185 -~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~ 258 (401)
T 4aez_A 185 -NRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN---H 258 (401)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC---C
T ss_pred -CCCEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC---C
Confidence 45799999999999999998543 34677888999999999999 889999999999999999998877666665 9
Q ss_pred CcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEE
Q 020107 195 KMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKV 270 (331)
Q Consensus 195 ~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 270 (331)
...|.+++|+|....++++++ .|+.|++||++++ +++.. ..+...|.+++|+|++ ..+++++ .++.+++|++
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNT--VDAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEE--EECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEE
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEE--EeCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEec
Confidence 999999999995556777765 7999999999985 55555 5678899999999997 5555543 5888999999
Q ss_pred cCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 271 GGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
..........+.+|...|++++|+|++ .+|++++ .||.|++|++.++..
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg---------~~l~s~~-~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSALSPDG---------RILSTAA-SDENLKFWRVYDGDH 383 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEEECTTS---------SEEEEEC-TTSEEEEEECCC---
T ss_pred CCccceeEEEecCCCCCEEEEEECCCC---------CEEEEEe-CCCcEEEEECCCCcc
Confidence 875445556678999999999999998 6999999 999999999988754
No 36
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.2e-39 Score=277.35 Aligned_cols=279 Identities=21% Similarity=0.271 Sum_probs=229.3
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE--eeecCcEeEEEEcCCCCCCCCeEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY--RMDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
+.....|+|++. ++||+|. |++|+|||..+++ +...+ ..|...|++|+|+|+ +++|+
T Consensus 105 d~y~~~l~wS~~----n~lAvgl-----------d~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd----g~~la 163 (420)
T 4gga_A 105 DYYLNLVDWSSG----NVLAVAL-----------DNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE----GNYLA 163 (420)
T ss_dssp CTTCBCEEECTT----SEEEEEE-----------TTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT----SSEEE
T ss_pred cccceeEEECCC----CEEEEEe-----------CCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC----CCEEE
Confidence 445677899864 6999997 9999999999876 33333 356778999999999 99999
Q ss_pred EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 87 QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+|+.||.+ +|++.+.+. |...+.+++++ +..|++|+.|+.+++||..... ..+..+.+|...+..+.|+|
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT
T ss_pred EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecC
Confidence 99999999 999988654 67788888874 5799999999999999998754 45677889999999999998
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCCCCEEEEE--ecCCeEEEEEecCCCCCceeee
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSDSNTLLTG--SYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
++.++++++.|+.+++||..+++... .+.....|...|.+++|+|.++.+++++ +.|++|++||++++ .+...
T Consensus 241 -~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~-- 316 (420)
T 4gga_A 241 -DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSA-- 316 (420)
T ss_dssp -TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEE--
T ss_pred -CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cccee--
Confidence 88999999999999999998775422 1222244899999999999777777764 47999999999985 44444
Q ss_pred eecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
..+...+.++.|+|++..++++++ .++.+++|++.. ++++.++.+|.+.|++++|+|++ ++|+||| .
T Consensus 317 ~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~~~V~~l~~spdg---------~~l~S~s-~ 384 (420)
T 4gga_A 317 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDG---------ATVASAA-A 384 (420)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTS---------SCEEEEE-T
T ss_pred eccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-c
Confidence 566778999999999844444444 467899999876 68899999999999999999999 6999999 9
Q ss_pred CCeEEEEcCCCc
Q 020107 316 DRLLRIWMPESD 327 (331)
Q Consensus 316 d~~i~iW~~~~~ 327 (331)
|++|+|||+.+.
T Consensus 385 D~tvriWdv~~~ 396 (420)
T 4gga_A 385 DETLRLWRCFEL 396 (420)
T ss_dssp TTEEEEECCSCS
T ss_pred CCeEEEEECCCC
Confidence 999999998653
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.8e-39 Score=266.06 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=204.9
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCCeE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDGSV 129 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 129 (331)
++.+|...|++++|+|+ +++|++|+.|+.+ +|++... ..|...|.+++|+++ +++|++|+.|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~----g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYY----GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp ECCSCSSCEEEEEECTT----SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred eccCCcCceEEEEECCC----CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 45789999999999999 9999999999999 9998643 237889999999864 8899999999999
Q ss_pred EEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCC-
Q 020107 130 SIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSD- 207 (331)
Q Consensus 130 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 207 (331)
++||+++++...+..+..|...|.+++|+|+. +.+|++++.|+.|++||++++........ .+|...|.+++|+| +
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p-~~ 157 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAP-AT 157 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCEEEEEECC-CC
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccCccceEeecC-Cc
Confidence 99999987655567778899999999999942 68999999999999999987643211111 34999999999999 4
Q ss_pred ------------CCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEc
Q 020107 208 ------------SNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 208 ------------~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 271 (331)
+.+|++|+.|++|++||+++.... ....+..|...|.+++|+|++ ..++++++.|+.+++|++.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 579999999999999999875432 222356899999999999985 3567777788899999997
Q ss_pred Ccccce-eEEe--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 272 GEKAEV-LETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 272 ~~~~~~-~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
...... ...+ ..|...|++++|+|++ ++||+++ .|+.|++|+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~las~~-~D~~v~lw~~~ 284 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKEN 284 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEE-TTSCEEEEEEC
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCC---------CEEEEEc-CCCcEEEEEEC
Confidence 643222 2233 4688899999999998 6999999 99999999976
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-41 Score=286.85 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=235.2
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc--cceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE--KNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
.....+.+++|+|.+ .+||+|+ .||.|++|++.... ........+|...|++++|+|++ +.+
T Consensus 65 ~~~~~v~~~~~s~~~---~~l~~~~----------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~ 128 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNN---KIIAGAL----------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ---DNV 128 (416)
T ss_dssp CCSSCEEEEEECSSS---SCEEEEE----------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS---TTB
T ss_pred ecCCceEEEEECCCC---CeEEEEc----------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCC---CCE
Confidence 355678899998876 8999998 79999999998721 12344457799999999999974 579
Q ss_pred EEEEcCCccE-EEecCCCc---------------ccCccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeeeeec
Q 020107 85 LAQADADGGL-LRDITGEK---------------ISSSMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQWKA 147 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~---------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 147 (331)
|++++.||.+ +|++.+.+ .|...|.+++|+|+ +..|++++.||.|++||+++++. +..+..
T Consensus 129 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~ 206 (416)
T 2pm9_A 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSY 206 (416)
T ss_dssp EEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECC
T ss_pred EEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEec
Confidence 9999999999 99998765 25678999999999 78899999999999999998754 555555
Q ss_pred c------cceeEEEeeCCCCCcEEEEEcCCC---eEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 148 H------EFELWATSFDVHQPHMVYTGSDDC---KFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 148 ~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
+ ...+.+++|+|.+..++++++.|+ .|++||++++ .....+. .+|...|.+++|+|.++.+|++++.|
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~d 284 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRD 284 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCC
Confidence 4 788999999995567999999998 9999999986 3444444 13899999999999778999999999
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE---------------E--
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE---------------T-- 280 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-- 280 (331)
+.|++||+++. +++.. +..|...|.+++|+|+++.++++++.++.+++|++......... .
T Consensus 285 g~v~~wd~~~~-~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (416)
T 2pm9_A 285 NTVLLWNPESA-EQLSQ-FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV 362 (416)
T ss_dssp SEEEEECSSSC-CEEEE-EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred CCEEEeeCCCC-cccee-ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence 99999999985 44444 57899999999999997667888888889999998764311110 0
Q ss_pred ----------------eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 281 ----------------YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 281 ----------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
...|...+++++|+|++ ++|++++ .|+.|+||++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---------~~la~~~-~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG---------KLVQITP-DGKGVSITNPKIS 415 (416)
T ss_dssp ----CCSCCCSSCCCCCSTTCCCSCCCEEETTT---------EEECBCT-TSSCBCCBCCCCC
T ss_pred cccccccccccccccCCccccCCccceEEeeCC---------eEEEEeC-CCCeEEEEEeccC
Confidence 01166788899999999 7999999 9999999999875
No 39
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-39 Score=276.77 Aligned_cols=278 Identities=18% Similarity=0.224 Sum_probs=219.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.+++|+|.++ ++||+|+ .||.|++|++.+..........+|...|.+++|+|++ +.+|+++
T Consensus 73 ~~~v~~~~~~~~~~--~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~ 137 (383)
T 3ei3_B 73 DRRVTSLEWHPTHP--TTVAVGS----------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN---TNQLFVS 137 (383)
T ss_dssp SSCEEEEEECSSCT--TEEEEEE----------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE---EEEEEEE
T ss_pred CCCEEEEEECCCCC--CEEEEEc----------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC---CCEEEEE
Confidence 45677888887654 7999998 7999999999987622222223699999999999932 7899999
Q ss_pred cCCccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 89 DADGGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+.|+.+ +|++.+... +...|.+++|+|++++|++++.||.|++||++ + .++..+..|...|.+++|+|
T Consensus 138 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~--~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G--HEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S--CEEEEEECSSSCEEEEEECS
T ss_pred eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C--CEEEEeccCCCcEEEEEECC
Confidence 999999 999986433 34779999999999999999999999999995 3 34677888999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCC----ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESP----FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
....++++++.|+.|++||+++.+ ....+ . |...|.+++|+|.++.+|++++.|+.|++||+++.......
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 289 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI- 289 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE-
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc-
Confidence 443399999999999999999843 33333 3 89999999999977889999999999999999986443332
Q ss_pred eeec-------C----------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCC
Q 020107 236 SVCL-------G----------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRG 296 (331)
Q Consensus 236 ~~~~-------~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~ 296 (331)
..| . +.+..++|+|++ . + +++.++.+++|++.. ++.+..+.+ |...+..++|+|+
T Consensus 290 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~-~-s~s~d~~i~iwd~~~--~~~~~~l~~~~~~~~~~~~~~s~~ 363 (383)
T 3ei3_B 290 -IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-Q-L-LLNDKRTIDIYDANS--GGLVHQLRDPNAAGIISLNKFSPT 363 (383)
T ss_dssp -EECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-T-T-CTTCCCCEEEEETTT--CCEEEEECBTTBCSCCCEEEECTT
T ss_pred -ccccccccccccceEEeccCCCCceEEEecCCc-c-c-ccCCCCeEEEEecCC--CceeeeecCCCCCceEEEEEEecC
Confidence 323 2 234445566654 2 2 555788899999876 577888876 4567777899999
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+ ++|++++ |+.|++||+++
T Consensus 364 g---------~~l~s~s--d~~i~iw~~~~ 382 (383)
T 3ei3_B 364 G---------DVLASGM--GFNILIWNRED 382 (383)
T ss_dssp S---------SEEEEEE--TTEEEEEECC-
T ss_pred c---------cEEEEec--CCcEEEEecCC
Confidence 8 6899987 89999999975
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.5e-39 Score=286.36 Aligned_cols=272 Identities=19% Similarity=0.342 Sum_probs=231.8
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.+++|+|.+ ++|++++ .++.|++|+.... ......+|...|.+++|+|+ ++.|+++
T Consensus 262 ~~~v~~v~~~~d~---~~l~~~~----------~d~~i~~w~~~~~---~~~~~~~h~~~v~~~~~~~~----~~~l~t~ 321 (577)
T 2ymu_A 262 SSSVNGVAFRPDG---QTIASAS----------DDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPD----GQTIASA 321 (577)
T ss_dssp SSCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTSC---EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred CCCEEEEEEcCCC---CEEEEEe----------CCCEEEEEeCCCc---EEEEEecCCCCeEEEEECCC----CCEEEEE
Confidence 3456677777765 8999998 7999999997653 33445789999999999999 8999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+.|+.+ +|++..... |...+.+++|+|+++.|++++.||.|++||.. + +.+..+.+|...|.+++|+| ++
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~--~~~~~~~~~~~~v~~~~~s~-dg 397 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVRGVAFSP-DG 397 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C--CEEEEEECCSSCEEEEEECT-TS
T ss_pred eCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C--CEEEEecCCCCCeEEEEECC-CC
Confidence 999999 999876543 67889999999999999999999999999965 3 33677888999999999999 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
++|++++.|+.|++||.. ++....+.. |...|.+++|+| ++.+|++++.|+.|++||... +.+. .+..|...
T Consensus 398 ~~l~~~~~d~~v~~~~~~-~~~~~~~~~---~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~--~~~~-~~~~~~~~ 469 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNRN-GQLLQTLTG---HSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG--QLLQ-TLTGHSSS 469 (577)
T ss_dssp SCEEEEETTSEEEEECTT-CCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS--CEEE-EEECCSSC
T ss_pred CEEEEEeCCCEEEEEeCC-CCEEEEecC---CCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC--CEEE-EEcCCCCC
Confidence 999999999999999964 555555555 999999999999 999999999999999999653 3333 35789999
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
|++++|+|++ .++++++.++.+++|+. +++.+..+.+|...|++++|+|++ ++|++++ .|+.|++|
T Consensus 470 v~~~~~spd~-~~las~~~d~~i~iw~~---~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~s~~-~dg~v~lw 535 (577)
T 2ymu_A 470 VRGVAFSPDG-QTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDG---------QTIASAS-DDKTVKLW 535 (577)
T ss_dssp EEEEEECTTS-CEEEEEETTSEEEEEET---TSCEEEEEECCSSCEEEEEECTTS---------SCEEEEE-TTSEEEEE
T ss_pred EEEEEEcCCC-CEEEEEeCCCEEEEEcC---CCCEEEEEeCCCCCEEEEEEcCCC---------CEEEEEE-CcCEEEEE
Confidence 9999999996 66777777777888873 368889999999999999999999 7999999 99999999
Q ss_pred cCCC
Q 020107 323 MPES 326 (331)
Q Consensus 323 ~~~~ 326 (331)
|...
T Consensus 536 d~~~ 539 (577)
T 2ymu_A 536 NRNG 539 (577)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 9754
No 41
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-38 Score=268.56 Aligned_cols=293 Identities=12% Similarity=0.050 Sum_probs=220.7
Q ss_pred eeeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----e----EEeEeeecCcEeEEEEc
Q 020107 4 AHCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----L----ELLYRMDTAGIFDIKWS 75 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----~----~~~~~~~~~~v~~~~~~ 75 (331)
..+.+..|+++++|+|++ .+||+|+.+.. ....++.|++|++...... + ...+..|...|.+++++
T Consensus 9 ~~~~~g~PV~sv~fs~dg---~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 9 ASYNVGYPAYGAKFLNND---TLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp EEEECSSCEEEEEEEETT---EEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE
T ss_pred eecCCCCCEEEEEEeCCC---cEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC
Confidence 455667899999999987 89999872100 0012446999998765421 1 11234567778888876
Q ss_pred CCCCCCCCeEEEEcC-----------CccE-EEecCCCcc---------------cCccEEEEEEcCCCCeEEEEe--cC
Q 020107 76 PVGGNAGPFLAQADA-----------DGGL-LRDITGEKI---------------SSSMCLCLEWNPSATSITVGL--SD 126 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~-----------dg~i-iw~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~--~d 126 (331)
++ .+++|.. |+.+ +|++..... +...+.+++|+|||+++++++ .|
T Consensus 83 ~~------~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 83 KG------IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp TT------EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred CC------EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 55 7777654 4444 787655432 234578999999999987554 68
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
++|++||+++++. +..+. |...|.+++|+| +++++++++. +.+++|+..+++....... ..|...|.+++|+|
T Consensus 157 ~~i~iwd~~~~~~--~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fsp- 229 (365)
T 4h5i_A 157 AIMRIIDPSDLTE--KFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGSCIARKTD-FDKNWSLSKINFIA- 229 (365)
T ss_dssp CEEEEEETTTTEE--EEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCCEEEEECC-CCTTEEEEEEEEEE-
T ss_pred CEEEEeECCCCcE--EEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCcceeeeec-CCCCCCEEEEEEcC-
Confidence 9999999998754 55555 777899999999 8899999885 4567777777665443332 44889999999999
Q ss_pred CCCEEEEEecCC----eEEEEEecCCCCCc--eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107 207 DSNTLLTGSYDE----YLRVWDVRSISKPV--NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET 280 (331)
Q Consensus 207 ~~~~l~~~~~d~----~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
++.++++++.|+ .+++||+....... ...+..|..+|++++|+|++ .++++++.|+.+++|++.. ++++.+
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~--~~~~~~ 306 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKD--LSMSKI 306 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTT--TEEEEE
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCC--CcEEEE
Confidence 999999999887 68899988753222 12246788999999999997 6777777888899999876 577777
Q ss_pred e-ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 281 Y-AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 281 ~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+ .+|...|++++|+|++ ++|||+| .|++|+||++..+.
T Consensus 307 ~~~gH~~~V~~v~fSpdg---------~~laS~S-~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 307 FKQAHSFAITEVTISPDS---------TYVASVS-AANTIHIIKLPLNY 345 (365)
T ss_dssp ETTSSSSCEEEEEECTTS---------CEEEEEE-TTSEEEEEECCTTT
T ss_pred ecCcccCCEEEEEECCCC---------CEEEEEe-CCCeEEEEEcCCCC
Confidence 5 6899999999999999 7999999 99999999997653
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-39 Score=273.52 Aligned_cols=289 Identities=14% Similarity=0.239 Sum_probs=230.1
Q ss_pred ecCcceeEeeecCCCCCc--EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCC
Q 020107 8 LDGNADAVEFCPQDSYHH--VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGN 80 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~--~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ 80 (331)
+.+++.+++|+|..+++. ++++++ ++.|++|++.+.+ .+..+ .. |...|++++|+|+...
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~-----------~~~v~vw~~~~~~-~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVG-----------SNRVTLYECHSQG-EIRLL-QSYVDADADENFYTCAWTYDSNT 83 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEE-----------TTEEEEEEECGGG-CEEEE-EEEECSCTTCCEEEEEEEECTTT
T ss_pred CCCceEEEEEecccCCCCceEEEECC-----------CCEEEEEEcCCCc-EEEee-eeccccCCCCcEEEEEeccCCCC
Confidence 456889999999633323 555555 8899999999765 33333 22 4567999999998432
Q ss_pred CCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeee---eccc
Q 020107 81 AGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQW---KAHE 149 (331)
Q Consensus 81 ~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~ 149 (331)
.+.+|++|+.||.+ +|++.+.+. |...|.+++|+| ++++|++++.||.|++||+++++. +..+ ..|.
T Consensus 84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~ 161 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VAIFGGVEGHR 161 (366)
T ss_dssp CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EEEECSTTSCS
T ss_pred CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EEEeccccccc
Confidence 23589999999999 999987654 688999999999 899999999999999999998754 5555 6799
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-------------------------cccCCCcceEEEEEe
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-------------------------NSKIHKMGVCCIASI 204 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~ 204 (331)
..|.+++|+| ++++|++++.||.|++||+++++....+. ....|...|.+++|+
T Consensus 162 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 162 DEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred CceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 9999999999 88999999999999999999765432221 122388999999998
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCCCC------------ceeeeeecCCceEEEEECCC--CCCeEEEEEecCcEEEEEE
Q 020107 205 PSDSNTLLTGSYDEYLRVWDVRSISKP------------VNETSVCLGGGVWRIKHHPF--IPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 270 (331)
+++|++++.|+.|++||+++.... ....+..|...|++++|+|+ + ..+++++.++.+++|++
T Consensus 241 ---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 241 ---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDL 316 (366)
T ss_dssp ---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEEC
T ss_pred ---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEEC
Confidence 569999999999999999886431 12335678889999999998 6 77778888899999999
Q ss_pred cCcc--cceeEEeecC--CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 271 GGEK--AEVLETYAKH--GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 271 ~~~~--~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.... ......+.+| ...|++++|+|++ ++|++++ .||.|++||+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~-~dg~i~iwd~~~ 366 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS---------SILIAVC-DDASIWRWDRLR 366 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSCEEEEEECTTS---------SEEEEEE-TTSEEEEEEC--
T ss_pred CCCCCccccceEEcccccCCceEEEEeCCCC---------CeEEEEe-CCCEEEEEEecC
Confidence 8743 2255577777 7899999999998 6999999 999999999863
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-39 Score=275.84 Aligned_cols=293 Identities=11% Similarity=0.111 Sum_probs=230.8
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc----cceEEeEeeecCcEeEEEEcCCCCCCC--
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE----KNLELLYRMDTAGIFDIKWSPVGGNAG-- 82 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 82 (331)
.+.+.+++|+| ++|++|+ .||.|++|++.... .........|...|.+++|+|+.+..+
T Consensus 16 ~~~i~~~~~~~-----~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 16 DADIFSVSACN-----SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SSCEEEEEECS-----SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred hcCeEEEEecC-----CeEEEEc----------CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence 45667777766 5888888 79999999998764 123444568999999999998710004
Q ss_pred -CeEEEEcCCccE-EEecCCCcc-----------c-----CccEEEEEEc----CCCCe-EEEEecCCeEEEEEccc---
Q 020107 83 -PFLAQADADGGL-LRDITGEKI-----------S-----SSMCLCLEWN----PSATS-ITVGLSDGSVSIVSVVE--- 136 (331)
Q Consensus 83 -~~l~~~~~dg~i-iw~~~~~~~-----------~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~--- 136 (331)
.+|++++.||.+ +|++.+.+. + ...|.+++|+ |+++. |++++.||.|++||+.+
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 699999999999 999876652 3 4889999999 99999 99999999999999987
Q ss_pred ---cceeeee-----ee-------ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC---Ccce
Q 020107 137 ---SQLEVLQ-----QW-------KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH---KMGV 198 (331)
Q Consensus 137 ---~~~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v 198 (331)
++. +. .+ ..|...|.+++|+| ++ ++++++.|+.|++||+++++....+.....| ...|
T Consensus 161 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 161 ESNSLT--LNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HHHHTT--TCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred ccccce--eeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 543 33 45 34788999999999 66 9999999999999999988766555532337 8899
Q ss_pred EEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeee-------------cCCceEEEEECCCCCCeEEEEEec
Q 020107 199 CCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVC-------------LGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
.+++|+| ++.+|++++.| +.|++||+++. +++.. +.. |...|.+++|+|++ ..+++++.+
T Consensus 237 ~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 312 (397)
T 1sq9_A 237 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG-ERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD 312 (397)
T ss_dssp EEEEECS-STTEEEEEEEETTEEEEEEEETTTC-CEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred ceEEECC-CCCEEEEEecCCCCceEEEEECCCC-cccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence 9999999 99999999999 99999999985 44444 355 89999999999997 677777788
Q ss_pred CcEEEEEEcCcccceeEEee------cC---------------CcceeeeeecCCCCcc-cccccCcEEEEeecCCCeEE
Q 020107 263 NGFAVVKVGGEKAEVLETYA------KH---------------GSLAYGADWQRGRSSL-EGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~~~~-~~~~~~~~l~s~~~~d~~i~ 320 (331)
+.+++|++.. ++.+..+. +| ...|++++|+|++... .+..++++|++++ .||.|+
T Consensus 313 g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~-~dg~i~ 389 (397)
T 1sq9_A 313 GKLRFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC-LDRSIR 389 (397)
T ss_dssp SEEEEEETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE-TTTEEE
T ss_pred CeEEEEEcCC--CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec-CCCcEE
Confidence 8899999877 57788888 77 9999999999996100 0000113899999 999999
Q ss_pred EEcCCCc
Q 020107 321 IWMPESD 327 (331)
Q Consensus 321 iW~~~~~ 327 (331)
+|+++++
T Consensus 390 iw~~~~g 396 (397)
T 1sq9_A 390 WFREAGG 396 (397)
T ss_dssp EEEEEC-
T ss_pred EEEcCCC
Confidence 9999876
No 44
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-39 Score=275.16 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=230.5
Q ss_pred ecCcceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEec----cCccc-----ceEEeEee----------ecC
Q 020107 8 LDGNADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNV----NAEEK-----NLELLYRM----------DTA 67 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~----~~~~~-----~~~~~~~~----------~~~ 67 (331)
..+.+.+++|+|.+ . +||+|+ .||.|++|++ .++.. ....+ .. |..
T Consensus 44 ~~~~v~~~~~s~~~---~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 44 KLDNIVSSTWNPLD---ESILAYGE----------KNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTN 109 (425)
T ss_dssp ECSCCSEEEECSSC---TTEEEEEE----------TBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CB
T ss_pred ccCceEEEEECCCC---CcEEEEec----------CCceEEEEEEecccCCccccccccccccc-cccccccccccCCCC
Confidence 34688999999987 6 999998 7999999999 66541 11111 22 567
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE- 140 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 140 (331)
.|++++|+|+ +++|++++.||.+ +|+..... .|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 110 ~v~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 110 QVTCLAWSHD----GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CEEEEEECTT----SSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred ceEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 8999999999 9999999999999 99954432 26789999999999999999999999999999764321
Q ss_pred -----------------------------------------------------eeeeeecccceeEEEeeCCCCCcEEEE
Q 020107 141 -----------------------------------------------------VLQQWKAHEFELWATSFDVHQPHMVYT 167 (331)
Q Consensus 141 -----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (331)
.+..+..|...|.+++|+| ++.+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEE
Confidence 1123446788899999998 7789999
Q ss_pred EcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEE
Q 020107 168 GSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIK 247 (331)
Q Consensus 168 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 247 (331)
++.|+.|++||+++++....+.. |...|.+++|+| ++ ++++++.|+.|++||+++. +++.. ...|...|.+++
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~ 337 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQN-TLLAL-SIVDGVPIFAGR 337 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECC---CSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTT-EEEEE-EECTTCCEEEEE
T ss_pred EcCCCEEEEEECCCCccceEecC---CCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCC-cEeEe-cccCCccEEEEE
Confidence 99999999999999887777765 899999999999 77 9999999999999999885 43433 467899999999
Q ss_pred ECCCCCCeEEEEEecCcEEEEEEcCcc------------------cceeEEeecCCc--ceeeeeecCCCCcccccccCc
Q 020107 248 HHPFIPGLVLAACMHNGFAVVKVGGEK------------------AEVLETYAKHGS--LAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~ 307 (331)
|+|++ ..+++++.++.+++|++.... .+.+..+.+|.. .|++++|+|++ +
T Consensus 338 ~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~ 407 (425)
T 1r5m_A 338 ISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG---------N 407 (425)
T ss_dssp ECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS---------S
T ss_pred EcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC---------c
Confidence 99997 677777788899999987631 117888889976 99999999999 6
Q ss_pred EEEEeecCCCeEEEEcCC
Q 020107 308 LVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~ 325 (331)
+|++++ .||.|++|+++
T Consensus 408 ~l~~~~-~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAY-SLQEGSVVAIP 424 (425)
T ss_dssp EEEEEE-SSSCCEEEECC
T ss_pred eEEEEe-cCceEEEEeec
Confidence 999999 99999999986
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.3e-39 Score=267.21 Aligned_cols=280 Identities=14% Similarity=0.197 Sum_probs=235.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+.+.+++|+|++ ++++++. .++.+.+|........+ ....|...|++++|+|+ +++|++
T Consensus 8 ~~~~v~~~~~s~dg---~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~----~~~l~~ 68 (337)
T 1gxr_A 8 GSKPAYSFHVTADG---QMQPVPF----------PPDALIGPGIPRHARQI--NTLNHGEVVCAVTISNP----TRHVYT 68 (337)
T ss_dssp EEEECCEEEECSSS---CEEECCC----------CTTSSSSTTCCSEEEEE--EEECCSSCCCEEEECSS----SSEEEE
T ss_pred cCCceeEEEECCCC---CEEEeec----------CCCcEeccccCCccccc--eeccCCCceEEEEEecC----CcEEEE
Confidence 34578889998887 7888886 46666666555543222 23479999999999999 899999
Q ss_pred EcCCccE-EEecCCCc-----------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 88 ADADGGL-LRDITGEK-----------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
++ ||.+ +|++.... .+...|.+++|+|+++.|++++.||.|++||+++++......+..|...+.++
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence 99 9999 99997653 35678999999999999999999999999999987755677788899999999
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 235 (331)
+|+| +++++++++.|+.|++||+++++....+.. |...|.+++|+| ++++|++++.|+.|++||+++. +.+..
T Consensus 148 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-~~~~~- 220 (337)
T 1gxr_A 148 AISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREG-RQLQQ- 220 (337)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-EEEEE-
T ss_pred EECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeec---ccCceEEEEECC-CCCEEEEEecCCcEEEEECCCC-ceEee-
Confidence 9999 889999999999999999998876666665 899999999999 9999999999999999999985 44444
Q ss_pred eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 236 SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
..+...+.+++|+|++ ..+++++.++.+++|++... + ...+..|...|.+++|+|++ ++|++++ .
T Consensus 221 -~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~---------~~l~~~~-~ 285 (337)
T 1gxr_A 221 -HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP--D-KYQLHLHESCVLSLKFAYCG---------KWFVSTG-K 285 (337)
T ss_dssp -EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS--C-EEEECCCSSCEEEEEECTTS---------SEEEEEE-T
T ss_pred -ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC--C-eEEEcCCccceeEEEECCCC---------CEEEEec-C
Confidence 5788999999999997 67777778888999998764 2 34677899999999999998 6999999 9
Q ss_pred CCeEEEEcCCCccc
Q 020107 316 DRLLRIWMPESDCL 329 (331)
Q Consensus 316 d~~i~iW~~~~~~~ 329 (331)
||.|++|++.++..
T Consensus 286 dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 286 DNLLNAWRTPYGAS 299 (337)
T ss_dssp TSEEEEEETTTCCE
T ss_pred CCcEEEEECCCCeE
Confidence 99999999987643
No 46
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.8e-39 Score=266.69 Aligned_cols=246 Identities=19% Similarity=0.236 Sum_probs=210.7
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
....+.+|...|++++|+|+ +++|++|+.||.+ +|++.+.+. |...|.+++|+|++++|++|+.|+.|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTD----SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEEECCCSSCEEEEEECTT----SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hheeecCCCCceEEEEECCC----CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 34556889999999999999 9999999999999 999877643 678899999999999999999999999
Q ss_pred EEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC
Q 020107 131 IVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS 208 (331)
Q Consensus 131 i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 208 (331)
+|++.+.. ......+.+|...|.++.|++ + ..+++++.|+.|++||+++++....+.. |...|.+++|+| ++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~-~~ 196 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAP-DT 196 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECT-TS
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcC---CCCceEEEEECC-CC
Confidence 99998643 234567788999999999987 4 3588999999999999999887766665 999999999999 99
Q ss_pred CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee--cCCc
Q 020107 209 NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA--KHGS 286 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 286 (331)
.+|++|+.|+.|++||+++. .+... +..|...|.+++|+|++ ..+++++.++.+++|++... +.+..+. .+..
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~-~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~ 271 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREG-MCRQT-FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRAD--QELMTYSHDNIIC 271 (340)
T ss_dssp SEEEEEETTSCEEEEETTTC-SEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--EEEEEECCTTCCS
T ss_pred CEEEEEeCCCcEEEEECCCC-eeEEE-EcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC--cEEEEEccCCccc
Confidence 99999999999999999985 43433 57899999999999997 77888888889999998874 4455554 3345
Q ss_pred ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 287 LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 287 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.|++++|+|++ ++|++++ .|+.|++||+.++.
T Consensus 272 ~v~~~~~s~~g---------~~l~~g~-~d~~i~vwd~~~~~ 303 (340)
T 1got_B 272 GITSVSFSKSG---------RLLLAGY-DDFNCNVWDALKAD 303 (340)
T ss_dssp CEEEEEECTTS---------SEEEEEE-TTSEEEEEETTTCC
T ss_pred ceEEEEECCCC---------CEEEEEC-CCCeEEEEEcccCc
Confidence 79999999999 6999999 99999999987654
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-39 Score=276.95 Aligned_cols=279 Identities=13% Similarity=0.063 Sum_probs=227.4
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
...++|+|.+ ++|++|+ .||.|++|++.... .. .....| ..+....|+|+ +++|++++.|
T Consensus 59 ~~~~~~s~~g---~~l~~~~----------~d~~v~i~d~~~~~-~~-~~~~~~-~~~~~~~~~~~----~~~l~~~~~d 118 (420)
T 3vl1_A 59 GKGNTFEKVG---SHLYKAR----------LDGHDFLFNTIIRD-GS-KMLKRA-DYTAVDTAKLQ----MRRFILGTTE 118 (420)
T ss_dssp CTTCEEEEEE---TTEEEEE----------ETTEEEEEECCSEE-TT-TTSCSC-CEEEEEEECSS----SCEEEEEETT
T ss_pred ccceeeeecC---CeEEEEE----------cCCcEEEEEecccc-ee-eEEecC-CceEEEEEecC----CCEEEEEECC
Confidence 3478888876 7889988 69999999998765 22 222333 44555578888 8999999999
Q ss_pred ccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107 92 GGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164 (331)
Q Consensus 92 g~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (331)
|.+ +|++.+.+. |...|.+++|+|++++|++++.|+.|++||+++++. +..+.+|...|.+++|+| ++.+
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~ 195 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIID-RGRN 195 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--CEEEECCSSCEEEEEEET-TTTE
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--ceEEcCCCCcEEEEEEcC-CCCE
Confidence 999 999887543 788999999999999999999999999999998754 677889999999999999 7899
Q ss_pred EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE---------------------ecCCCCEEEEEecCCeEEEE
Q 020107 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS---------------------IPSDSNTLLTGSYDEYLRVW 223 (331)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~~l~~~~~d~~i~iw 223 (331)
|++++.|+.|++||+++++....+.....|...|.++.+ +| ++++|++++.||.|++|
T Consensus 196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEE
T ss_pred EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEE
Confidence 999999999999999998877777653345555666555 67 78899999999999999
Q ss_pred EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccc
Q 020107 224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~ 302 (331)
|+++. .........|...|.+++|+|++..++++++.++.+++|++... ...+..+.+ |...|..+.+. ++
T Consensus 275 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~~-~~----- 346 (420)
T 3vl1_A 275 NVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-ECPVGEFLINEGTPINNVYFA-AG----- 346 (420)
T ss_dssp ETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-TSCSEEEEESTTSCEEEEEEE-TT-----
T ss_pred ECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-cCchhhhhccCCCCceEEEeC-CC-----
Confidence 99986 44444345688999999999998448888888899999999875 344666666 67778888655 55
Q ss_pred cccCcEEEEeecCCCeEEEEcCCCc
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++|++++ .|+.|++|++.+.
T Consensus 347 ----~~l~s~~-~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 347 ----ALFVSSG-FDTSIKLDIISDP 366 (420)
T ss_dssp ----EEEEEET-TTEEEEEEEECCT
T ss_pred ----CEEEEec-CCccEEEEeccCC
Confidence 6999999 9999999998763
No 48
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=259.56 Aligned_cols=277 Identities=21% Similarity=0.272 Sum_probs=224.5
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEe-EeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELL-YRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
..+|+|++. ++||+|. |++|+|||+.+++ .+..+ ...|...|++++|+|+ +++|++|+.
T Consensus 28 ~~~l~WS~~----~~lAvg~-----------D~tV~iWd~~tg~-~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSG----NVLAVAL-----------DNSVYLWSASSGD-ILQLLQMEQPGEYISSVAWIKE----GNYLAVGTS 87 (318)
T ss_dssp CBCEEECTT----SEEEEEE-----------TTEEEEEETTTCC-EEEEEECCSTTCCEEEEEECTT----SSEEEEEET
T ss_pred ceEEEECCC----CEEEEEe-----------CCEEEEEECCCCC-EEEEEEecCCCCeEEEEEECCC----CCEEEEEEC
Confidence 467999865 4899997 9999999999876 33332 2456778999999999 999999999
Q ss_pred CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107 91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH 163 (331)
Q Consensus 91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (331)
||.+ +|++.+.+. |...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.+ ++.
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~ 163 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAP-DGR 163 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECT-TSS
T ss_pred CCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-eeEEEEcCccCceEEEEEcC-CCC
Confidence 9999 999988764 4556665544 56799999999999999988754 45677888999999999998 789
Q ss_pred EEEEEcCCCeEEEEEccCCCceee-eecccCCCcceEEEEEecCCCCEE--EEEecCCeEEEEEecCCCCCceeeeeecC
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTL--LTGSYDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
++++++.|+.|++||+++++.... ......+...|.++.++|..+..+ ++++.++.|++||.+.. ..... ..+.
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~--~~~~ 240 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSA--VDAH 240 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEE--EECS
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccc--ccce
Confidence 999999999999999998764322 122234788999999999555554 45678899999999875 33433 6788
Q ss_pred CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 241 GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
..+..+.|+|.+..++++++ .++.+++|++.. ++++.++.+|.+.|++++|+|++ ++|+|+| .||+|
T Consensus 241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~~~V~~l~~spdg---------~~l~S~s-~D~~v 308 (318)
T 4ggc_A 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDG---------ATVASAA-ADETL 308 (318)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTS---------SCEEEEE-TTTEE
T ss_pred eeeeeeeecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCC---------CEEEEEe-cCCeE
Confidence 89999999999844444444 567899999876 68899999999999999999998 6999999 99999
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
+|||+.+.
T Consensus 309 ~iWd~~~~ 316 (318)
T 4ggc_A 309 RLWRCFEL 316 (318)
T ss_dssp EEECCSCC
T ss_pred EEEECCCC
Confidence 99999653
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=262.83 Aligned_cols=250 Identities=19% Similarity=0.235 Sum_probs=197.9
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---------c-cCccEEEEEEcCCCCeEEEEecCC
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---------I-SSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---------~-~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
...+.+|...|++++|+|+ +|++|+.|+.+ +|++.... . |...|.+++|+|++++|++|+.|+
T Consensus 7 ~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp EEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 3445789999999999988 99999999999 99987631 2 778899999999999999999999
Q ss_pred eEEEEEcccc-----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEE
Q 020107 128 SVSIVSVVES-----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCI 201 (331)
Q Consensus 128 ~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~ 201 (331)
+|++||++.. ....+..+.+|...|.+++|+| ++++|++++.|+.|++||++.. .....+....+|...|.++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 9999998642 2244667889999999999999 7899999999999999999543 2222222224499999999
Q ss_pred EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC-CeEEEEEecCcEEEEEEcCccc-----
Q 020107 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP-GLVLAACMHNGFAVVKVGGEKA----- 275 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 275 (331)
+|+| ++.+|++++.|++|++||.+.........+..|.+.|++++|+|+.. ..+++++.|+.+++|++.....
T Consensus 160 ~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 160 IWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999 99999999999999999998642222233578999999999999853 4567777888999999865311
Q ss_pred -ceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 276 -EVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 276 -~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.....+.+ |...|++++|++++ +|++++ .||.|++|++.++
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~----------~l~s~~-~dg~v~iw~~~~~ 281 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG----------LIASVG-ADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS----------CEEEEE-TTSCEEEEEEETT
T ss_pred eEEeeecccccccceEEEEEcCCC----------EEEEEe-CCCEEEEEEcCCC
Confidence 33445554 89999999999764 899999 9999999998765
No 50
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-39 Score=276.65 Aligned_cols=264 Identities=16% Similarity=0.230 Sum_probs=219.1
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCC
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSA 117 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~ 117 (331)
.+..|+..... ....+.+|.+.|++++|+|+ +++|++|+.||.+ +|++.+.+. |...|.+++|+|++
T Consensus 47 ~~~~~~~~~~~--~~~~l~gH~~~V~~~~~sp~----~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 47 TAVSFNPTDLV--CCRTLQGHSGKVYSLDWTPE----KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120 (380)
T ss_dssp GCCCCCCCCCE--EEEEECCCSSCEEEEEECTT----SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS
T ss_pred cccccccceeE--EeecccccccEEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC
Confidence 34455554442 44556899999999999999 8999999999999 999987643 67789999999999
Q ss_pred CeEEEEecCCeEEEEEcccc-----ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec--
Q 020107 118 TSITVGLSDGSVSIVSVVES-----QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-- 190 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 190 (331)
++|++|+.|+.+++|++.+. .......+.+|...+.++.|.|.++..|++|+.|+.|++||+++++....+..
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 99999999999999998752 22234567889999999999996677899999999999999999887665522
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
..+|...|.++.|+|.++++|++|+.|++|++||++....++.. +.+|.+.|.+++|+|++ ..+++++.|+.+++|++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEET
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEEC
Confidence 24589999999998868899999999999999999865455544 57899999999999997 67888888899999999
Q ss_pred cCcccceeEEeecCC-------cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 271 GGEKAEVLETYAKHG-------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 271 ~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.. ++.+..+..+. ..|++++|+|++ ++|++++ .||.|++||+.++.
T Consensus 279 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~g~-~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 279 RT--GHQLQVYNREPDRNDNELPIVTSVAFSISG---------RLLFAGY-SNGDCYVWDTLLAE 331 (380)
T ss_dssp TT--TEEEEEECCCCSSSCCSSCSCSEEEECSSS---------SEEEEEC-TTSCEEEEETTTCC
T ss_pred CC--CcEEEEecccccccccccCceEEEEECCCC---------CEEEEEE-CCCCEEEEECCCCc
Confidence 87 46666665432 348999999999 6999999 99999999987653
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=256.07 Aligned_cols=272 Identities=15% Similarity=0.169 Sum_probs=227.1
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+++| |.+ ++|++|+ .||.|++||+.+.. .......|...|.+++|+|+ +++|+++
T Consensus 18 ~~~v~~~~~-~~~---~~l~s~~----------~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~l~~~ 77 (313)
T 3odt_A 18 DQDVRDVVA-VDD---SKVASVS----------RDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSE----KELLLFG 77 (313)
T ss_dssp SSCEEEEEE-EET---TEEEEEE----------TTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETT----TTEEEEE
T ss_pred CCCcEEEEe-cCC---CEEEEEE----------cCCcEEEEECCCCE--EEEEeecCCccEEEEEECCC----CCEEEEe
Confidence 345667777 544 7899998 79999999997764 45555788999999999999 8999999
Q ss_pred cCCccE-EEecCCCc---------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 89 DADGGL-LRDITGEK---------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
+.||.+ +|++.... .|...|.+++| +++.+++++.||.|++|| .+ .....+..|...+.+++|.
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~--~~~~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG--SLVYNLQAHNASVWDAKVV 151 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT--EEEEEEECCSSCEEEEEEE
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC--cEEEecccCCCceeEEEEc
Confidence 999999 89876542 26788999999 578999999999999999 23 3467778899999999999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
|.+++.+++++.|+.|++||.. +....+. ..|...+.+++|+| ++. +++++.|+.|++||+++. +++.. +..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~-~~~~~-~~~ 223 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTG-DVLRT-YEG 223 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTC-CEEEE-EEC
T ss_pred cCCCCEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCch-hhhhh-hhc
Confidence 8678999999999999999943 2233332 23889999999999 776 999999999999999985 44444 478
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
|...|.+++|+|++ .+++++.++.+++|++.. ++.+..+..|...|++++|+|++ + +++++ .||.
T Consensus 224 ~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~---------~-~~~~~-~dg~ 288 (313)
T 3odt_A 224 HESFVYCIKLLPNG--DIVSCGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNG---------D-IIVGS-SDNL 288 (313)
T ss_dssp CSSCEEEEEECTTS--CEEEEETTSEEEEECTTT--CCEEEEEECSSSCEEEEEECTTS---------C-EEEEE-TTSC
T ss_pred CCceEEEEEEecCC--CEEEEecCCEEEEEECCC--CceeEEEeccCceEEEEEEccCC---------C-EEEEe-CCCc
Confidence 99999999999995 688888888889998876 57888899999999999999998 4 66788 8999
Q ss_pred EEEEcCCCccc
Q 020107 319 LRIWMPESDCL 329 (331)
Q Consensus 319 i~iW~~~~~~~ 329 (331)
|++|+++++.+
T Consensus 289 i~iw~~~~~~~ 299 (313)
T 3odt_A 289 VRIFSQEKSRW 299 (313)
T ss_dssp EEEEESCGGGC
T ss_pred EEEEeCCCCce
Confidence 99999988754
No 52
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.7e-38 Score=259.55 Aligned_cols=248 Identities=21% Similarity=0.308 Sum_probs=212.9
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|...|++++|+|+ +++|++++.||.+ +|++...+. |...|.+++|+|++++|++++.|+.|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEcccCCcEEEEEECCC----CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 55566889999999999999 8999999999999 999876543 678899999999999999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
+||+++++. +..+.+|...|.+++|+| +++++++++.|+.|++||+++++....+.. |...|.+++|+| ++.+
T Consensus 91 vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~ 163 (312)
T 4ery_A 91 IWDVSSGKC--LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPA---HSDPVSAVHFNR-DGSL 163 (312)
T ss_dssp EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECT-TSSE
T ss_pred EEECCCCcE--EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecC---CCCcEEEEEEcC-CCCE
Confidence 999998754 778889999999999999 789999999999999999999887777766 999999999999 9999
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
|++++.|+.|++||+++. +.+......+..++..++|+|++ ..+++++.++.+++|++.. ++.+..+.+|...+..
T Consensus 164 l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 164 IVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSK--GKCLKTYTGHKNEKYC 239 (312)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTT--TEEEEEECSSCCSSSC
T ss_pred EEEEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCC--CcEEEEEEecCCceEE
Confidence 999999999999999985 44554345667789999999997 6778888888899999876 5778888888765443
Q ss_pred e--eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 291 A--DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 291 ~--~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+ .+++.+. .+|++++ .||.|++||+.++.+
T Consensus 240 ~~~~~~~~~~--------~~l~sg~-~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 240 IFANFSVTGG--------KWIVSGS-EDNLVYIWNLQTKEI 271 (312)
T ss_dssp CCEEEECSSS--------CEEEECC-TTSCEEEEETTTCCE
T ss_pred EEEEEEeCCC--------cEEEEEC-CCCEEEEEECCCchh
Confidence 3 4443332 7999999 999999999987653
No 53
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-39 Score=268.19 Aligned_cols=253 Identities=13% Similarity=0.169 Sum_probs=200.7
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcC--CCCeEEEEecC
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNP--SATSITVGLSD 126 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~--~~~~l~~~~~d 126 (331)
+..+..+|...|++++|+|+ +++|++|+.|+.+ +|++.+.. .|...|.+++|++ ++++|++|+.|
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~----g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYY----GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---------CCEEEEEECGG----GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred eeeecccccCeEEEeeEcCC----CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 44566789999999999999 9999999999999 99987642 2788999999986 48899999999
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
++|++||+++++......+.+|...|.+++|+|+. +.+|++++.|+.|++||++.+...........|...|.+++|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 99999999987655567788899999999999942 68999999999999999987643222223345999999999999
Q ss_pred CC-----------------CCEEEEEecCCeEEEEEecCCCC-CceeeeeecCCceEEEEECCCC---CCeEEEEEecCc
Q 020107 206 SD-----------------SNTLLTGSYDEYLRVWDVRSISK-PVNETSVCLGGGVWRIKHHPFI---PGLVLAACMHNG 264 (331)
Q Consensus 206 ~~-----------------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~ 264 (331)
+ +.+|++|+.|++|++||++.... .....+..|...|.+++|+|++ ...+++++.|+.
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 161 -AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp -CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred -ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 5 46899999999999999975321 1222356899999999999985 256777778888
Q ss_pred EEEEEEcCcc--cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 265 FAVVKVGGEK--AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+++|++.... ......+..|...|++++|+|++ ++||+++ .|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~las~~-~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA---------NILAVSG-GDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT---------CCEEEEE-SSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC---------CEEEEEc-CCCeEEEEEEC
Confidence 9999987621 11233456789999999999998 6999999 99999999975
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-38 Score=270.39 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=221.1
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG 100 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~ 100 (331)
+++++||+|+ .+|.|++||+.... .......|...|++++|+|+ +++|++++.|+.+ +|++.+
T Consensus 107 ~~~~~l~~~~----------~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 107 LQMRRFILGT----------TEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFPS----GEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp SSSCEEEEEE----------TTSCEEEECTTSCE--EEEETTSSSSCEEEEEECTT----SSEEEEEETTSEEEEEETTT
T ss_pred cCCCEEEEEE----------CCCCEEEEeCCCcc--eeeecccccCccEEEEECCC----CCEEEEEeCCCeEEEEeCCC
Confidence 3448999998 79999999998764 44455689999999999999 8999999999999 999987
Q ss_pred Ccc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec---c---------------------cc
Q 020107 101 EKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA---H---------------------EF 150 (331)
Q Consensus 101 ~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------------------~~ 150 (331)
.+. |...|.+++|+|+++.|++++.||.|++||+++++. +..+.. + ..
T Consensus 171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 653 688999999999999999999999999999998754 455543 2 24
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCC
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 229 (331)
.+.+++|+| +++++++++.||.|++||+++++....+. ..|...|.+++|+| ++. +|++++.||.|++||+++.+
T Consensus 249 ~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 249 KKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDG-NNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTT
T ss_pred cccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeC-CCCCEEEEEeCCCeEEEEEcCCCc
Confidence 455566777 78899999999999999999887555443 34889999999999 776 99999999999999999876
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc-------ceeEEeecCCcceeeeeecCCCCcccc
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA-------EVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
.++......|...|.++.+.+. ..+++++.++.+++|++..... .....+.+|...|.+++|+|++.
T Consensus 325 ~~~~~~~~~~~~~v~~~~~~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---- 398 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYFAAG--ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE---- 398 (420)
T ss_dssp SCSEEEEESTTSCEEEEEEETT--EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS----
T ss_pred CchhhhhccCCCCceEEEeCCC--CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC----
Confidence 6666644447888999977643 6777777888899999976321 22334567889999999999982
Q ss_pred cccCcEEEEeecCCCeEEEEcCCC
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.+ ..++++| .+|.+.+|++++
T Consensus 399 -~~-g~l~a~g-~~g~~~~~~~~~ 419 (420)
T 3vl1_A 399 -SN-GEVLEVG-KNNFCALYNLSN 419 (420)
T ss_dssp -SS-CEEEEEE-TTTEEEEEESCC
T ss_pred -Cc-ceEEEEc-CCceEEEEeccC
Confidence 11 1566666 699999999875
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-37 Score=254.46 Aligned_cols=248 Identities=17% Similarity=0.189 Sum_probs=197.4
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+...+.+++|+|.+ ++||+|+ .|+.|+||++..........+.+|...|++++|+|... +++|++
T Consensus 8 h~~~V~~~~~s~~g---~~las~s----------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~--g~~l~s 72 (297)
T 2pm7_B 8 HNEMIHDAVMDYYG---KRMATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS 72 (297)
T ss_dssp CSSCEEEEEECTTS---SEEEEEE----------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGG--CSEEEE
T ss_pred CcCceEEEEECCCC---CEEEEEe----------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCc--CCEEEE
Confidence 44567777887765 8999999 79999999997643234445588999999999986310 679999
Q ss_pred EcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
|+.|+++ +|++.+.+ .|...|.+++|+|+ +++|++++.|+.|++||++++.......+.+|...|.+++
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 9999999 99998753 26788999999997 8899999999999999998754222456778999999999
Q ss_pred eCCCC------------CcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107 157 FDVHQ------------PHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL 220 (331)
Q Consensus 157 ~~~~~------------~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i 220 (331)
|+|.. +.+|++|+.|+.|++||+++++... ......+|...|.+++|+| + +.+|++++.|++|
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp-~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYMASVSQDRTC 231 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC-CCCCceEEEEEECCCcE
Confidence 99842 4689999999999999999766321 1112244999999999999 6 4899999999999
Q ss_pred EEEEecCCCCCce-eee--eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 221 RVWDVRSISKPVN-ETS--VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 221 ~iwd~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
++||++....+.. ... ..|...|++++|+|++ ..+++++.++.+++|+...
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence 9999987432222 112 3678899999999997 6777888888999999864
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=274.28 Aligned_cols=279 Identities=13% Similarity=0.135 Sum_probs=218.7
Q ss_pred cCcceeEeeec-CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC---cccceE-EeEeeecCcEeEEEEcCCCCCCCC
Q 020107 9 DGNADAVEFCP-QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA---EEKNLE-LLYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 9 ~~~~~~v~~~~-~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
.+.+.+++|+| .+ ++||+|+ .||.|++||+.. .. ... .....|...|++++|+|+ +.
T Consensus 63 ~~~V~~~~~s~~~~---~~l~s~s----------~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~----~~ 124 (437)
T 3gre_A 63 PNSITSSAVSPGET---PYLITGS----------DQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPN----FD 124 (437)
T ss_dssp TSCEEEEEEECSSS---CEEEEEE----------TTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTT----SS
T ss_pred CCceEEEEECCCCC---CEEEEec----------CCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCC----CC
Confidence 35688888888 55 8999998 799999999977 32 111 222258999999999998 89
Q ss_pred eEEEEcCCccE-EEecC---CCcc------------------cCccEEEEE--EcCCCCeEEEEecCCeEEEEEccccce
Q 020107 84 FLAQADADGGL-LRDIT---GEKI------------------SSSMCLCLE--WNPSATSITVGLSDGSVSIVSVVESQL 139 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~---~~~~------------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~ 139 (331)
+|++++.||.+ +|++. .++. +...+.++. ++++++.|++++.||.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999999999 99985 2211 234455555 557899999999999999999998754
Q ss_pred eeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC---CCCEEEEE
Q 020107 140 EVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS---DSNTLLTG 214 (331)
Q Consensus 140 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~ 214 (331)
+..+.. |...|++++|+| ++++|++++.||.|++||+++++....+.. .|...|.+++|+|. ++.+|+++
T Consensus 205 --~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 205 --LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp --EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred --eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEE
Confidence 667776 889999999999 789999999999999999999876666652 27789999977652 57799999
Q ss_pred ecCCeEEEEEecCCCCCceeee-----------------------e--ecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 215 SYDEYLRVWDVRSISKPVNETS-----------------------V--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~-----------------------~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
+.|+.|++||+++++ .+..+. . .|...|++++|+ ++ ..+++++.++.+++|+
T Consensus 280 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 280 SSKTFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFS 356 (437)
T ss_dssp STTEEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEE
T ss_pred cCCCcEEEEEcCCCc-EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEE
Confidence 999999999998753 222211 1 166779999999 43 6788888899999999
Q ss_pred EcCcccceeEEeec-------------------------------------CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107 270 VGGEKAEVLETYAK-------------------------------------HGSLAYGADWQRGRSSLEGKRKNSLVATC 312 (331)
Q Consensus 270 ~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 312 (331)
+... +....+.+ |...|++++|+++.+ +.+|+++
T Consensus 357 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~-------~~~l~s~ 427 (437)
T 3gre_A 357 LNEL--SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE-------TPLLVAC 427 (437)
T ss_dssp TTCG--GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS-------SEEEEEE
T ss_pred CCCc--ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC-------ceEEEEE
Confidence 8763 33333333 899999999999821 1699999
Q ss_pred ecCCCeEEEEc
Q 020107 313 SFYDRLLRIWM 323 (331)
Q Consensus 313 ~~~d~~i~iW~ 323 (331)
+ .||.|+||+
T Consensus 428 ~-~dG~I~iw~ 437 (437)
T 3gre_A 428 D-NSGLIGIFQ 437 (437)
T ss_dssp E-TTSCEEEEC
T ss_pred c-CCceEEEeC
Confidence 9 999999996
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=261.63 Aligned_cols=248 Identities=18% Similarity=0.236 Sum_probs=210.8
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
....+.+|...|++++|+|+ +++|++|+.||.+ +|+..+.+. +...|.+++|+|++..|++|+.|+.++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKD----KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEecCCCCeEEEEEECCC----CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 34456899999999999999 8999999999999 999876543 567789999999999999999999999
Q ss_pred EEEccccc----eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 131 IVSVVESQ----LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 131 i~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
+|++.... ......+..|...|.+++|+| ++..|++++.|++|++||+++++....+.. |...|.+++++|.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPS 207 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECCC
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEEeC
Confidence 99986431 123456778999999999998 778999999999999999999988777776 9999999999883
Q ss_pred -CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--
Q 020107 207 -DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-- 283 (331)
Q Consensus 207 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (331)
++++|++|+.|+.|++||++++ +++.. +..|...|.+++|+|++ ..+++++.++.+++|++... +.+..+..
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~-~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~ 282 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSG-QCVQA-FETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRAD--REVAIYSKES 282 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--EEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-cEEEE-ecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCC--cEEEEEcCCC
Confidence 3589999999999999999985 44443 57899999999999997 77888888899999998874 44444543
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+...+.+++|+|++ ++|++++ .|+.|++||+.++.
T Consensus 283 ~~~~~~~~~~s~~g---------~~l~~g~-~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 283 IIFGASSVDFSLSG---------RLLFAGY-NDYTINVWDVLKGS 317 (354)
T ss_dssp CCSCEEEEEECTTS---------SEEEEEE-TTSCEEEEETTTCS
T ss_pred cccceeEEEEeCCC---------CEEEEEE-CCCcEEEEECCCCc
Confidence 34578999999998 6999999 99999999997764
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=262.92 Aligned_cols=291 Identities=15% Similarity=0.187 Sum_probs=227.2
Q ss_pred ecCcceeEeeec-CCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-----------eeecCcEeEEEEc
Q 020107 8 LDGNADAVEFCP-QDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-----------RMDTAGIFDIKWS 75 (331)
Q Consensus 8 ~~~~~~~v~~~~-~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~ 75 (331)
+.+.+.+++|+| .+ ++||+|+ .||.|++|++........... .+|...|.+++|+
T Consensus 42 h~~~v~~~~~s~~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 42 HGGGINTLDIEPVEG---RYMLSGG----------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp CSSCEEEEEECTTTC---CEEEEEE----------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred cCCcEEEEEEecCCC---CEEEEEc----------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc
Confidence 456788888888 55 8999998 799999999987653221111 2488999999999
Q ss_pred CCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCC---CeEEEEecCCeEEEEEccccceeeeeeee
Q 020107 76 PVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSA---TSITVGLSDGSVSIVSVVESQLEVLQQWK 146 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 146 (331)
|++ +.+|++++.||.+ +|++.+.+. +...+.++.|++.+ .++++++.+|.|++||+++++. +..+.
T Consensus 109 ~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~ 183 (408)
T 4a11_B 109 PHD---TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--SHILQ 183 (408)
T ss_dssp TTC---TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--CEEEC
T ss_pred cCC---CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--eeeec
Confidence 942 7799999999999 999988664 46778999999854 4899999999999999998754 67788
Q ss_pred cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeee------------cccCCCcceEEEEEecCCCCEEEE
Q 020107 147 AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQ------------NSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 147 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
.|...|.+++|+|....++++++.||.|++||++++.. ...+. ....|...|.+++|+| ++.+|++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 262 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLT 262 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEE
Confidence 89999999999995444799999999999999987652 22220 1134889999999999 9999999
Q ss_pred EecCCeEEEEEecCCCCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee
Q 020107 214 GSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA 291 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 291 (331)
++.|+.|++||+++.+........ ..........+.......+++++.++.+++|++.. ++.+..+.+|...|+++
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~v~~~ 340 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS--GEQITMLKGHYKTVDCC 340 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT--CCEEEEECCCSSCEEEE
T ss_pred ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC--CcceeeeccCCCeEEEE
Confidence 999999999999986433222000 11111122233333336788888899999999877 68889999999999999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|+|++ ++|++++ .||.|++|+++++..
T Consensus 341 ~~s~~~---------~~l~s~~-~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 341 VFQSNF---------QELYSGS-RDCNILAWVPSLYEP 368 (408)
T ss_dssp EEETTT---------TEEEEEE-TTSCEEEEEECC---
T ss_pred EEcCCC---------CEEEEEC-CCCeEEEEeCCCCCc
Confidence 999998 6999999 999999999988653
No 59
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-37 Score=256.16 Aligned_cols=247 Identities=18% Similarity=0.179 Sum_probs=195.8
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCC-CCCCCCeEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPV-GGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~ 86 (331)
+.+.+.+++|+|.+ ++||+|+ .|+.|+|||+..........+.+|...|++++|+|. . +.+|+
T Consensus 12 H~~~V~~v~~s~~g---~~lasgs----------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~---~~~l~ 75 (316)
T 3bg1_A 12 HEDMIHDAQMDYYG---TRLATCS----------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY---GNILA 75 (316)
T ss_dssp --CCEEEEEECGGG---CEEEEEE----------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGG---SSCEE
T ss_pred ccCeEEEeeEcCCC---CEEEEEe----------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCC---CCEEE
Confidence 34566777777655 8999999 799999999987642334456789999999999863 1 67999
Q ss_pred EEcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccc-eeeeeeeecccceeEE
Q 020107 87 QADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQ-LEVLQQWKAHEFELWA 154 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~ 154 (331)
+|+.|+.+ +|++.+.. .|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ......+.+|...+.+
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 99999999 99998753 26788999999998 7899999999999999998753 2334556789999999
Q ss_pred EeeCCCC----------------CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----CEEEEE
Q 020107 155 TSFDVHQ----------------PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS----NTLLTG 214 (331)
Q Consensus 155 ~~~~~~~----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~ 214 (331)
++|+|.. +.+|++++.|+.|++||++............+|...|.+++|+| ++ .+|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp-~~~~~~~~las~ 234 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP-SIGLPTSTIASC 234 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC-CSSCSCCEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC-CCCCCCceEEEE
Confidence 9999842 36899999999999999976532222222345999999999999 64 789999
Q ss_pred ecCCeEEEEEecCCC--CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 215 SYDEYLRVWDVRSIS--KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+.|++|++||++... ......+..|...|++++|+|++ ..+++++.|+.+++|+...
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence 999999999998631 11122246789999999999997 6788888899999999864
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-36 Score=258.82 Aligned_cols=261 Identities=18% Similarity=0.258 Sum_probs=210.6
Q ss_pred CCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc--------------
Q 020107 43 NGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-------------- 104 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-------------- 104 (331)
+....+|+....... +... ..|...|.+++|+|+ +++|++++ ++.+ +|++.+++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspd----g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 39 NDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND----GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 112 (393)
T ss_dssp SSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT----SSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred CceEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCC----CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence 334556765543211 1122 259999999999999 99999987 5666 9998765431
Q ss_pred ----------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 105 ----------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 105 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
...|.+++|+|++++|++|+.|+.|++||+.+++. +..+.+|...|.+++|+| ++.+|++++.|+.|
T Consensus 113 ~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v 189 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTV 189 (393)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEccCCCCEEEEEEcC-CCCEEEEecCCCcE
Confidence 12489999999999999999999999999998754 777889999999999999 78899999999999
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee------eeecCCceEEEEE
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET------SVCLGGGVWRIKH 248 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~ 248 (331)
++||+++++....+. +...+.+++|+|.++.+|++|+.|+.|++||++++ ..+... ...|...|++++|
T Consensus 190 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 190 RIWDLRTGQCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp EEEETTTTEEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEE
T ss_pred EEEECCCCeeEEEEE----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEE
Confidence 999999987665554 56789999999978899999999999999999875 333321 1468899999999
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCcc----------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGEK----------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
+|++ ..+++++.++.+++|++.... +.....+.+|...|.+++|+|++ .+|++++ .|+.
T Consensus 265 ~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------~~l~sgs-~D~~ 333 (393)
T 1erj_A 265 TRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---------EYILSGS-KDRG 333 (393)
T ss_dssp CTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---------CEEEEEE-TTSE
T ss_pred CCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC---------CEEEEEe-CCCe
Confidence 9997 677788888899999986531 34566788999999999999998 6999999 9999
Q ss_pred EEEEcCCCcc
Q 020107 319 LRIWMPESDC 328 (331)
Q Consensus 319 i~iW~~~~~~ 328 (331)
|++||+.++.
T Consensus 334 v~iwd~~~~~ 343 (393)
T 1erj_A 334 VLFWDKKSGN 343 (393)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCe
Confidence 9999998764
No 61
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.3e-38 Score=268.87 Aligned_cols=262 Identities=14% Similarity=0.207 Sum_probs=214.7
Q ss_pred CCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------cc
Q 020107 42 RNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEK-------------IS 104 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~ 104 (331)
.+|.|+||++...... ......+|...|++++|+| + +.+|++|+.||.+ +|++.+.. .|
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 6999999999664321 2223468999999999999 6 8899999999999 99998762 16
Q ss_pred CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeee--ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQW--KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
...|.+++|+|++ +.|++++.||.|++||+++++. +..+ ..|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc--cEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC
Confidence 7899999999998 6899999999999999998754 6667 78999999999999 889999999999999999999
Q ss_pred CCceeee-ecccCCCcc-eEEEEEecCCCCEEEEE---ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107 182 SPFKLAF-QNSKIHKMG-VCCIASIPSDSNTLLTG---SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 182 ~~~~~~~-~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
++....+ .. |... +.++.|+| ++.+|++| +.|+.|++||+++...++......+...+.+++|+|++ ..+
T Consensus 208 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 282 (402)
T 2aq5_A 208 GTVVAEKDRP---HEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIV 282 (402)
T ss_dssp TEEEEEEECS---SCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEE
T ss_pred CceeeeeccC---CCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEE
Confidence 8776666 33 6655 89999999 89999999 78999999999987665655445678899999999997 555
Q ss_pred EEEE-ecCcEEEEEEcCcccceeEEeec--CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 257 LAAC-MHNGFAVVKVGGEKAEVLETYAK--HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 257 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++++ .++.+++|++.... ..+..+.. |...|.+++|+|++ .++++ .++.+++|++.++.
T Consensus 283 ~~~g~~dg~i~i~d~~~~~-~~~~~l~~~~~~~~v~~~~~sp~~---------~~~~s---~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEA-PFLHYLSMFSSKESQRGMGYMPKR---------GLEVN---KCEIARFYKLHERK 344 (402)
T ss_dssp EEEETTCSCEEEEEECSST-TCEEEEEEECCSSCCSEEEECCGG---------GSCGG---GTEEEEEEEEETTE
T ss_pred EEEEcCCCeEEEEEecCCC-cceEeecccccCCcccceEEeccc---------cccee---cceeEEEEEcCCCc
Confidence 5555 58889999998753 22333333 56899999999998 56654 46799999998753
No 62
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.2e-37 Score=256.03 Aligned_cols=256 Identities=14% Similarity=0.193 Sum_probs=213.3
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcC--CCCeEEEEe
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNP--SATSITVGL 124 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~--~~~~l~~~~ 124 (331)
++.+..+|...|++++|+|+ +++|++++.||.+ +|++.+.. .|...|.+++|+| ++++|++++
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY----GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS----SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccccCcccccceeEEEEcCC----CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 34566889999999999999 8999999999999 99998652 2688999999999 589999999
Q ss_pred cCCeEEEEEccccce-------eeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEEccCCCceeeeec-----
Q 020107 125 SDGSVSIVSVVESQL-------EVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWDIRESPFKLAFQN----- 190 (331)
Q Consensus 125 ~dg~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 190 (331)
.||.|++||+++++. ..+..+..|...|.+++|+| + +.++++++.||.|++||+++++....+..
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 999999999987532 44677788999999999999 6 88999999999999999998876544331
Q ss_pred -----ccCCCcceEEEEEecC--CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC---CeEEEEE
Q 020107 191 -----SKIHKMGVCCIASIPS--DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP---GLVLAAC 260 (331)
Q Consensus 191 -----~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~ 260 (331)
...|...+.+++|+|. ++.++++++.|+.+.+|+...........+..|...|++++|+|++. .++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 1247889999999993 28999999999999888777643222333567999999999999963 3677777
Q ss_pred ecCcEEEEEEcCc--------------------------------------------ccceeEEeecCCcceeeeeecCC
Q 020107 261 MHNGFAVVKVGGE--------------------------------------------KAEVLETYAKHGSLAYGADWQRG 296 (331)
Q Consensus 261 ~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~ 296 (331)
.++.+++|++... ..+.+..+.+|...|++++|+|+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 7888999999763 13667778899999999999999
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+ ++|++++ .||.|++|+++++.
T Consensus 318 ~---------~~l~s~~-~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 318 G---------TILSSAG-DDGKVRLWKATYSN 339 (351)
T ss_dssp S---------CCEEEEE-TTSCEEEEEECTTS
T ss_pred C---------CEEEEec-CCCcEEEEecCcCc
Confidence 8 6999999 99999999998764
No 63
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8e-37 Score=252.82 Aligned_cols=243 Identities=14% Similarity=0.217 Sum_probs=204.4
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC-----------cccCccEEEEEEcCCCCeEEEEec
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE-----------KISSSMCLCLEWNPSATSITVGLS 125 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~ 125 (331)
+...+.+|.+.|++++|+|++ +.+|++|+.|+.+ +|++... +.|...|.+++|+|++++|++|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~---~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQ---PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEccccceEEEEEccCCC---ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 444568999999999999973 4799999999999 9987642 237889999999999999999999
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
|++|++||+++++. +..+.+|...|.+++|+| ++.++++++.|+.|++||++. .+...+.. |...|.++.+.|
T Consensus 86 D~~v~~wd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~---h~~~v~~~~~~~ 158 (319)
T 3frx_A 86 DKTLRLWDVATGET--YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG-QCLATLLG---HNDWVSQVRVVP 158 (319)
T ss_dssp TSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS-CEEEEECC---CSSCEEEEEECC
T ss_pred CCEEEEEECCCCCe--eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEec---cCCcEEEEEEcc
Confidence 99999999998854 778899999999999998 889999999999999999974 34555544 999999999998
Q ss_pred C-----CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE
Q 020107 206 S-----DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET 280 (331)
Q Consensus 206 ~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
. ++..|++++.|+.|++||+++. +.... +..|...|.+++|+|++ .++++++.++.+++|++.. .+.+..
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~-~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~--~~~~~~ 233 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQF-QIEAD-FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAA--KKAMYT 233 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTT-EEEEE-ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTT--TEEEEE
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcc-hhhee-ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CcEEEE
Confidence 3 2348999999999999999875 33332 57899999999999997 6777778888899999877 466777
Q ss_pred eecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 281 YAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 281 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+.. ...|.+++|+|++ .+|++++ +..+++|+++..
T Consensus 234 ~~~-~~~v~~~~~sp~~---------~~la~~~--~~~i~v~~~~~~ 268 (319)
T 3frx_A 234 LSA-QDEVFSLAFSPNR---------YWLAAAT--ATGIKVFSLDPQ 268 (319)
T ss_dssp EEC-CSCEEEEEECSSS---------SEEEEEE--TTEEEEEEETTE
T ss_pred ecC-CCcEEEEEEcCCC---------CEEEEEc--CCCcEEEEeCcC
Confidence 765 4689999999998 5888776 667999998764
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=264.43 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=216.8
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc---------ceEEeEeeec------------
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK---------NLELLYRMDT------------ 66 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~---------~~~~~~~~~~------------ 66 (331)
..+.+.+++|+|.+ ++||+|+ .||.|+||++..... .+...+.+|.
T Consensus 27 ~~~~V~~v~~s~~g---~~la~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 93 (447)
T 3dw8_B 27 EADIISTVEFNHSG---ELLATGD----------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIE 93 (447)
T ss_dssp GGGSEEEEEECSSS---SEEEEEE----------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEEC
T ss_pred ccCcEEEEEECCCC---CEEEEEc----------CCCeEEEEEecCCCCCCcccccceeEeccccccccccccccccccc
Confidence 35688899998866 8999998 799999999987541 1344557787
Q ss_pred CcEeEEEEcCCCCCCC--CeEEEEcCCccE-EEecCC-------------------------------------------
Q 020107 67 AGIFDIKWSPVGGNAG--PFLAQADADGGL-LRDITG------------------------------------------- 100 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~--~~l~~~~~dg~i-iw~~~~------------------------------------------- 100 (331)
..|++++|+|+ + ..|++++.|+.+ +|++..
T Consensus 94 ~~V~~l~~~~~----~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (447)
T 3dw8_B 94 EKINKIRWLPQ----KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPR 169 (447)
T ss_dssp CCCCEEEECCC----CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEE
T ss_pred CceEEEEEcCC----CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccce
Confidence 88999999999 6 799999999999 999865
Q ss_pred ---CcccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee-------eeecccceeEEEeeCCCCCcEEEEEcC
Q 020107 101 ---EKISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ-------QWKAHEFELWATSFDVHQPHMVYTGSD 170 (331)
Q Consensus 101 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~ 170 (331)
...|...|.+++|+|++++|++| .|+.|++||++.... .+. .+.+|...|++++|+|+++++|++++.
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 23478889999999999999998 799999999985321 222 356789999999999943489999999
Q ss_pred CCeEEEEEccCCCc----eeeeecccCCCc------------ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 171 DCKFSGWDIRESPF----KLAFQNSKIHKM------------GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 171 dg~i~i~d~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
||.|++||+++++. ...+.. |.. .|.+++|+| ++.+|++++. +.|++||++...+++..
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEE---PEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECC---C-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred CCeEEEEECcCCccccceeeEecc---CCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccce
Confidence 99999999998875 455554 665 899999999 9999999998 99999999974455554
Q ss_pred eeeecCCc---------------eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------------
Q 020107 235 TSVCLGGG---------------VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA----------------- 282 (331)
Q Consensus 235 ~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 282 (331)
+..|... +..++|+|++ ..+++++.++.+++|++... +.+ .+.
T Consensus 323 -~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 323 -YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTK--RDI-TLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp -EESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTC--CEE-EEECCSTTCCTTCBCCCCCE
T ss_pred -eeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCC--cce-eeeecccccccccccCCccc
Confidence 3455431 3349999997 66777778888999998763 222 222
Q ss_pred ----------------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 283 ----------------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 283 ----------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
.+...|..++|+|++ .+||+++ .+ .+++|.-.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~---------~~la~~~-~~-~~~~~~~~ 445 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKE---------NIIAVAT-TN-NLYIFQDK 445 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSS---------SEEEEEC-SS-CEEEEECC
T ss_pred cccCCcccccccccccccCCceeEEEECCCC---------CEEEEEe-cc-eeeeeccc
Confidence 234578899999998 6899887 44 58888643
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-36 Score=250.81 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=199.5
Q ss_pred eEEeEeeecCcEeEEEE-----cC-CCCCCCCeEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcCCC
Q 020107 58 LELLYRMDTAGIFDIKW-----SP-VGGNAGPFLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNPSA 117 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~-----~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~~~ 117 (331)
....+.+|...|++++| ++ + +++|++|+.|+.+ +|++...+ .|...|.+++|+|++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d----~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENED----SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCC----CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eeeeeccchhhhhheeeEEEeecCCC----CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 34456889999999999 66 5 8899999999999 99986432 367889999999999
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG 197 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 197 (331)
.++++|+.|++|++||+++++. +..+.+|...|.+++|+| ++++|++++.|+.|++||++... .........|...
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~ 164 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDW 164 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCE--EEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcE--EEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCce
Confidence 9999999999999999998754 778889999999999999 78999999999999999998432 3333322458999
Q ss_pred eEEEEEecCCC----------CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107 198 VCCIASIPSDS----------NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV 267 (331)
Q Consensus 198 v~~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
|.+++|+| ++ .+|++++.|+.|++||.+. ... ..+..|...|.+++|+|++ .++++++.++.+++
T Consensus 165 v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 165 VSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIR-YTFKAHESNVNHLSISPNG-KYIATGGKDKKLLI 239 (343)
T ss_dssp EEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEE-EEEECCSSCEEEEEECTTS-SEEEEEETTCEEEE
T ss_pred eeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC--cee-EEEcCccccceEEEECCCC-CEEEEEcCCCeEEE
Confidence 99999999 54 7899999999999999432 222 3357899999999999997 67778888888999
Q ss_pred EEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 268 VKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 268 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|++... ......+. +...|.+++|+|++ .++++ + .|+.|++|++.++.
T Consensus 240 wd~~~~-~~~~~~~~-~~~~v~~v~~sp~~---------~~la~-~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 240 WDILNL-TYPQREFD-AGSTINQIAFNPKL---------QWVAV-G-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EESSCC-SSCSEEEE-CSSCEEEEEECSSS---------CEEEE-E-ESSCEEEEESSSCC
T ss_pred EECCCC-cccceeec-CCCcEEEEEECCCC---------CEEEE-E-CCCCEEEEEeCCCC
Confidence 998543 23334443 45679999999997 56654 5 58999999997653
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=256.87 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=211.1
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCC
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDG 127 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg 127 (331)
...+.+|...|++++|+|+ +++|++++.||.+ +|++... ..|...|.+++|+++ +++|++++.||
T Consensus 4 ~~~~~~h~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp -CCEEECCCCEEEEEECSS----SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEecCCcccEEEEEEcCC----CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 3456899999999999999 8999999999999 9999732 236889999999987 89999999999
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
.|++||+.+++...+..+..|...|.+++|+|.. +.++++++.|+.|++||+++......... ..|...|.+++|+|.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPA 158 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEECCC
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEEcCc
Confidence 9999999988765678888899999999999932 78999999999999999998754443333 348999999999994
Q ss_pred ------------CCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEE
Q 020107 207 ------------DSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 207 ------------~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 270 (331)
++.+|++++.|+.|++||++..... ....+..|...|.+++|+|++ ...+++++.++.+++|++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 4899999999999999999975432 222346789999999999993 378888888999999999
Q ss_pred cCcccceeEE-e--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 271 GGEKAEVLET-Y--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 271 ~~~~~~~~~~-~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.......... + ..|...|++++|+|++ ++|++++ .||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~-~dg~i~iw~~~~ 287 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKENL 287 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEE-SSSSEEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCC---------CEEEEec-CCCcEEEEeCCC
Confidence 8753222222 2 2488899999999999 6999999 899999999873
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-36 Score=292.66 Aligned_cols=284 Identities=13% Similarity=0.159 Sum_probs=236.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.+++|+|.+ ++||+|+ .||.|++||+.+.. ......+|...|.+++|+|+ +++|+++
T Consensus 615 ~~~v~~~~~s~~~---~~l~s~~----------~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~~----~~~l~s~ 675 (1249)
T 3sfz_A 615 TDAVYHACFSQDG---QRIASCG----------ADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSD----DSYIATC 675 (1249)
T ss_dssp SSCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT----SSEEEEE
T ss_pred cccEEEEEECCCC---CEEEEEe----------CCCeEEEEECCCCC--EEEEeccCCCCEEEEEEecC----CCEEEEE
Confidence 3456677777765 8999998 79999999999876 33344789999999999999 9999999
Q ss_pred cCCccE-EEecCCCcc------cCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 89 DADGGL-LRDITGEKI------SSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+.||.+ +|++.+++. |...|.+++|+| ++..+++|+.||.|++||+.+++. +..+.+|...|++++|+|
T Consensus 676 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEEECCCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch--hheecCCCCCEEEEEEec
Confidence 999999 999988654 688999999999 455799999999999999998754 777889999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeec-------------------------------------------------
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQN------------------------------------------------- 190 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------------------------------- 190 (331)
++.++++++.||.|++||+++++....+..
T Consensus 754 -~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 754 -DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp -STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred -CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 889999999999999999987643322210
Q ss_pred ---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107 191 ---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAV 267 (331)
Q Consensus 191 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
..+|...|.+++|+| ++.++++++.|+.|++||+.+. ..+.. ...|...|.+++|+|++ ..+++++.++.+++
T Consensus 833 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~-~~~~~-~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR-LKVAD-CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRV 908 (1249)
T ss_dssp EEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred eEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-ceeee-cCCCccceEEEEECCCC-CEEEEEeCCCeEEE
Confidence 114788899999999 9999999999999999999985 33333 57899999999999987 67888888888899
Q ss_pred EEEcCc--------------------------------------------------------------------------
Q 020107 268 VKVGGE-------------------------------------------------------------------------- 273 (331)
Q Consensus 268 ~~~~~~-------------------------------------------------------------------------- 273 (331)
|++...
T Consensus 909 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 909 WETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988 (1249)
T ss_dssp EEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEE
T ss_pred EEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEE
Confidence 885310
Q ss_pred ---ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 274 ---KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 274 ---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.++....+.+|...|++++|+|++ ++|++++ .||.|++|++.++.
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~s~~-~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADG---------KTLISSS-EDSVIQVWNWQTGD 1036 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSS---------SCEEEEC-SSSBEEEEETTTTE
T ss_pred EcCCCceeeecccCCCceEEEEECCCC---------CEEEEEc-CCCEEEEEECCCCc
Confidence 133445566789999999999998 6999999 99999999998764
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.6e-36 Score=278.25 Aligned_cols=284 Identities=13% Similarity=0.176 Sum_probs=238.5
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+.+.+++|+|.+ .+||+|+ .+|.|++||+.++. .......|...|.+++|+|+ +++|++
T Consensus 12 h~~~v~~i~~sp~~---~~la~~~----------~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~l~~ 72 (814)
T 3mkq_A 12 RSDRVKGIDFHPTE---PWVLTTL----------YSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIAR----KNWIIV 72 (814)
T ss_dssp ECSCEEEEEECSSS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG----GTEEEE
T ss_pred CCCceEEEEECCCC---CEEEEEe----------CCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCC----CCEEEE
Confidence 34567788888766 8999998 79999999998875 44445789999999999999 899999
Q ss_pred EcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 88 ADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.||.+ +|++.+++. |...|.+++|+|+++.|++++.||.|++||+.++. .....+.+|...|.+++|+|.
T Consensus 73 ~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETT
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcC
Confidence 9999999 999987654 67899999999999999999999999999998763 346677889999999999986
Q ss_pred CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-CCCEEEEEecCCeEEEEEecCCCCCceeeeeec
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS-DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
++..+++++.||.|++||++++.....+.. .+...+.+++|+|. ++.+|++++.|+.|++||+++. .++.. +..|
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~-~~~~ 227 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVAT-LEGH 227 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEE-EECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEE-EcCC
Confidence 678999999999999999998776665554 24588999999973 5779999999999999999885 44443 4679
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
...|.+++|+|++ ..+++++.++.+++|++.. ++.+..+..|...+.+++|+|++. ..+++++ .|+.+
T Consensus 228 ~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~-~~~~~ 295 (814)
T 3mkq_A 228 MSNVSFAVFHPTL-PIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGR--------KNYIASG-FDNGF 295 (814)
T ss_dssp SSCEEEEEECSSS-SEEEEEETTSCEEEEETTT--CSEEEEECCSSSSEEEEEECTTCG--------GGEEEEE-ETTEE
T ss_pred CCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC--CcEEEEeecCCCcEEEEEEccCCC--------ceEEEEE-eCCCE
Confidence 9999999999997 5777777788899998876 578888999999999999999984 4434444 48889
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
.+|++..+
T Consensus 296 ~~~~~~~~ 303 (814)
T 3mkq_A 296 TVLSLGND 303 (814)
T ss_dssp EEEECSCC
T ss_pred EEEEcCCC
Confidence 99987654
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=251.73 Aligned_cols=282 Identities=15% Similarity=0.197 Sum_probs=225.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.+.+++|+|...++++|++|+ .||.|++|++......+.....+|...|++++|+|+ +++|++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s 103 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGS----------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD----GSKVFT 103 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEE----------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT----SSEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEEC----------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC----CCEEEE
Confidence 456788999998864458999998 799999999997443554666889999999999999 899999
Q ss_pred EcCCccE-EEecCCCcc-----cCccEEEEEE--cCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 88 ADADGGL-LRDITGEKI-----SSSMCLCLEW--NPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~-----~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
++.||.+ +|++.+.+. |...|.+++| +|++++|++++.||.|++||+++++. +..+..+. .+.++.+.+
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SEEEECSS-CEEEEEEET
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EEEEecCC-CceEEEecC
Confidence 9999999 999988764 6889999999 89999999999999999999998754 56666554 566777664
Q ss_pred CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE----EEEEecCCeEEEEEecCCCC-Ccee
Q 020107 160 HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT----LLTGSYDEYLRVWDVRSISK-PVNE 234 (331)
Q Consensus 160 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~~-~~~~ 234 (331)
..+++++.++.+++||++.......... ..+...+.++.+.+ +... +++++.|+.|++||++.... ....
T Consensus 181 ---~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 ---PMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp ---TEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ---CeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 5788888899999999987654332222 23455667777766 4443 99999999999999987532 1122
Q ss_pred eeeecCC------------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107 235 TSVCLGG------------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 235 ~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
.+..|.. .|++++|+|++ ..+++++.++.+++|++.. ++.+..+.+|...|++++|+|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~g----- 327 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDA--RTKLKTSEQLDQPISACCFNHNG----- 327 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTT--TEEEEECCCCSSCEEEEEECTTS-----
T ss_pred eeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCC--CcEEEEecCCCCCceEEEECCCC-----
Confidence 2345544 79999999997 6788888899999999886 58888999999999999999999
Q ss_pred cccCcEEEEeecCCCeEEEEcC
Q 020107 303 KRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
++|++++ .|+..+.|++
T Consensus 328 ----~~l~~~s-~d~~~~~~~~ 344 (368)
T 3mmy_A 328 ----NIFAYAS-SYDWSKGHEF 344 (368)
T ss_dssp ----SCEEEEE-CCCSTTCGGG
T ss_pred ----CeEEEEe-cccccccccc
Confidence 6999999 7876555554
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.6e-36 Score=259.35 Aligned_cols=262 Identities=15% Similarity=0.213 Sum_probs=220.7
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI 103 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~ 103 (331)
++|++|+ .||.|++||+.+.+ ....+.+|...|.+++|+|+ + .|++|+.||.+ +|++.+.+.
T Consensus 133 ~~l~sgs----------~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~----~-~l~s~s~dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 133 NYVITGA----------DDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG----G-ILVSGSTDRTVRVWDIKKGCC 195 (464)
T ss_dssp TEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEECST----T-EEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEc----------CCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCC----C-EEEEEeCCCCEEEEECCCCcE
Confidence 7999998 79999999998876 44445789999999999998 6 99999999999 999987653
Q ss_pred ------cCccEEEEEEc--CCCCeEEEEecCCeEEEEEcccccee---------------------eeeeeecccceeEE
Q 020107 104 ------SSSMCLCLEWN--PSATSITVGLSDGSVSIVSVVESQLE---------------------VLQQWKAHEFELWA 154 (331)
Q Consensus 104 ------~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------~~~~~~~~~~~v~~ 154 (331)
|...|.+++|+ ++++++++|+.||.|++||+.++... .+..+.+|...+.+
T Consensus 196 ~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 275 (464)
T 3v7d_B 196 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275 (464)
T ss_dssp EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE
T ss_pred EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE
Confidence 68899999998 57789999999999999999875422 14456778888888
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
+. + +++++++++.|+.|++||+++++....+.. |...|.+++|+| ++.++++|+.|+.|++||++++ +++..
T Consensus 276 ~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~-~~~~~ 347 (464)
T 3v7d_B 276 VS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG-ELMYT 347 (464)
T ss_dssp EE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred Ec--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEE
Confidence 75 3 568999999999999999999887777765 999999999999 9999999999999999999985 44444
Q ss_pred eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 235 TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
+..|...|.+++|++ ..+++++.++.+++|++... ...... .|...+..++|+|++ ++|++++
T Consensus 348 -~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~--~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~- 410 (464)
T 3v7d_B 348 -LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY--SRKFSY-HHTNLSAITTFYVSD---------NILVSGS- 410 (464)
T ss_dssp -ECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC--CEEEEE-ECTTCCCEEEEEECS---------SEEEEEE-
T ss_pred -EeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC--ceeeee-cCCCCccEEEEEeCC---------CEEEEec-
Confidence 578999999999984 67888888999999998764 333333 356678888999998 6888887
Q ss_pred CCCeEEEEcCCCccc
Q 020107 315 YDRLLRIWMPESDCL 329 (331)
Q Consensus 315 ~d~~i~iW~~~~~~~ 329 (331)
|+.|++||++++.+
T Consensus 411 -dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 411 -ENQFNIYNLRSGKL 424 (464)
T ss_dssp -TTEEEEEETTTCCE
T ss_pred -CCeEEEEECCCCcE
Confidence 89999999998754
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2e-35 Score=246.81 Aligned_cols=275 Identities=10% Similarity=0.064 Sum_probs=223.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCC-eE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGP-FL 85 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~-~l 85 (331)
+.+.+.+++|+|.+ ++|++|+ .||.|++|++...... .......|...|.+++|+|+ ++ +|
T Consensus 10 h~~~v~~~~~s~~~---~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSK---SLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN----TDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGG---TEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES----SSEEE
T ss_pred CCCcEEEEEEcCCC---CEEEEEc----------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC----CCcEE
Confidence 45678899999866 7999998 7999999999876411 12333578999999999999 89 99
Q ss_pred EEEcCCccE-EEec-CCCc-----c--cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc---------cceeeeeeeec
Q 020107 86 AQADADGGL-LRDI-TGEK-----I--SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE---------SQLEVLQQWKA 147 (331)
Q Consensus 86 ~~~~~dg~i-iw~~-~~~~-----~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~ 147 (331)
++++.||.+ +|++ .+.+ . |...|.+++|+| ++.|++++.|+.|++||+++ ++ ++..+.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~- 148 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK- 148 (342)
T ss_dssp EEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-
T ss_pred EEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-
Confidence 999999999 9999 6643 3 778899999999 99999999999999999986 43 345555
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
|...+.+++|+| +. +++++.|+.|++||+++ +........ ..|...|.+++|+|.++.++++++.||.|++||++
T Consensus 149 ~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 888999999998 43 99999999999999998 553322222 33888999999998456899999999999999998
Q ss_pred CC-----CCCceeeeeecCC---------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-Ccceeee
Q 020107 227 SI-----SKPVNETSVCLGG---------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-GSLAYGA 291 (331)
Q Consensus 227 ~~-----~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~ 291 (331)
.. ..+... +..|.. .|.+++|+|++ ..+++++.++.+++|++.. ++.+..+.+| ...|+++
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 225 DQGDDYNSSKRFA-FRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQT--RKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp TTCCSTTCTTCEE-EECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTT--TEEEEECCCCSSSEEEEE
T ss_pred CCCccccccccee-eecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCcc--HhHhhhhhcccCCCceEe
Confidence 75 244443 456644 99999999987 6777888888999999876 5778889998 9999999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCe-EEEEc
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRL-LRIWM 323 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~-i~iW~ 323 (331)
+ |++ ++|++++ .||. .+.|.
T Consensus 301 ~--~~~---------~~l~s~s-~Dg~~~~~~~ 321 (342)
T 1yfq_A 301 A--CSD---------NILCLAT-SDDTFKTNAA 321 (342)
T ss_dssp E--ECS---------SEEEEEE-ECTHHHHCSS
T ss_pred c--CCC---------CeEEEEe-cCCccccccc
Confidence 9 887 6999999 8998 44443
No 72
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-35 Score=254.63 Aligned_cols=259 Identities=15% Similarity=0.266 Sum_probs=215.6
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK 102 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~ 102 (331)
+++|++|+ .||.|++||+.+.+ ......+|...|.+++| + +++|++|+.||.+ +|++.+.+
T Consensus 143 ~~~l~~g~----------~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~----~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 143 DQKIVSGL----------RDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--D----ERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp SSEEEEEE----------SSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEESSSCC
T ss_pred CCEEEEEe----------CCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--C----CCEEEEEcCCCeEEEEECCCCc
Confidence 38999998 79999999998875 44555789999999999 4 5699999999999 99998765
Q ss_pred c------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee-eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEE
Q 020107 103 I------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE-VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFS 175 (331)
Q Consensus 103 ~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 175 (331)
. |...|.+++|++ +.+++|+.||.|++||+.+++.. ....+.+|...|.+++|. ++++++++.||.|+
T Consensus 205 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIK 279 (435)
T ss_dssp EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEE
Confidence 4 678899999964 69999999999999999886532 235677899999999983 47999999999999
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCe
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 255 (331)
+||+++++....+.. |...|.++.++ +.++++|+.|+.|++||++++ .++.. +..|...|.+++|.+ ..
T Consensus 280 vwd~~~~~~~~~~~~---~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~-~~~~~-~~~h~~~v~~~~~~~---~~ 348 (435)
T 1p22_A 280 VWNTSTCEFVRTLNG---HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-ACLRV-LEGHEELVRCIRFDN---KR 348 (435)
T ss_dssp EEETTTCCEEEEEEC---CSSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEE-ECCCSSCEEEEECCS---SE
T ss_pred EEECCcCcEEEEEcC---CCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCC-CEEEE-EeCCcCcEEEEEecC---CE
Confidence 999999988777776 99999999985 579999999999999999985 44444 578999999999932 67
Q ss_pred EEEEEecCcEEEEEEcCcc-------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 256 VLAACMHNGFAVVKVGGEK-------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+++++.++.+++|++.... ...+..+.+|.+.|++++| ++ .+|++++ .||.|++||+.+..
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~---------~~l~s~s-~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE---------FQIVSSS-HDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS---------SCEEECC-SSSEEEEEC-----
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC---------CEEEEEe-CCCEEEEEECCCCC
Confidence 8888889999999986532 1178888999999999999 44 5899999 99999999997754
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-36 Score=277.78 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=186.2
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
+-+...+.+++|+|.+ ++||+|+ .||.|+||+....+ .... ..|...|.+++|+|. . +|
T Consensus 14 ~gh~~~V~~lafspdg---~~lAsgs----------~Dg~I~lw~~~~~~--~~~~-~~~~~~V~~l~fspg----~-~L 72 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQ---NLLAIAT----------VTGEVHIYGQQQVE--VVIK-LEDRSAIKEMRFVKG----I-YL 72 (902)
T ss_dssp EECSSCEEEEEEETTT---TEEEEEE----------TTSEEEEECSTTCE--EEEE-CSSCCCEEEEEEETT----T-EE
T ss_pred cCCCCCcEEEEECCCC---CEEEEEe----------CCCEEEEEeCCCcE--EEEE-cCCCCCEEEEEEcCC----C-EE
Confidence 3456778899999887 8999999 79999999987654 2222 347788999999994 4 89
Q ss_pred EEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee---------eeeecccc
Q 020107 86 AQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL---------QQWKAHEF 150 (331)
Q Consensus 86 ~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~ 150 (331)
++++.|+.+ +|++.+.+. +...|.+++|+|++++|++|+.||.|++||+++++.... ..+.+|..
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 999999999 999987654 467899999999999999999999999999998754211 23467889
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc---------------cCCCcceEEEEEecCCCCEEEEEe
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS---------------KIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
.|++++|+|.+...+++|+.|+.| +||+++++....+... ..|...|.+++|+| ++.+|++++
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs 230 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIH 230 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEE
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEE
Confidence 999999999656789999999999 9999998766666541 12357899999999 999999999
Q ss_pred cCCeEEEEEecCCCCCcee-ee---e-------------ecCCceEEEEECC----CCCCeEEEEEecC------cEEEE
Q 020107 216 YDEYLRVWDVRSISKPVNE-TS---V-------------CLGGGVWRIKHHP----FIPGLVLAACMHN------GFAVV 268 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~-~~---~-------------~~~~~v~~~~~~~----~~~~~~~~~~~~~------~~~~~ 268 (331)
.|+.|++||++++ +++.. .+ . .|..+|++++|++ ++ ..++++++.+ .+.+|
T Consensus 231 ~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~-~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 231 EDNSLVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY-TSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp TTCCEEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE-EEEEEEEECSTTSSCCCEEEE
T ss_pred CCCeEEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC-CEEEEeCCCCCCCCCceEEEE
Confidence 9999999999885 43321 00 0 1345799999964 32 2455555332 56666
Q ss_pred E
Q 020107 269 K 269 (331)
Q Consensus 269 ~ 269 (331)
+
T Consensus 309 ~ 309 (902)
T 2oaj_A 309 D 309 (902)
T ss_dssp E
T ss_pred e
Confidence 5
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=277.91 Aligned_cols=293 Identities=10% Similarity=0.044 Sum_probs=210.4
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc-eE--------EeEeeecCcEeEEEEcCC
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN-LE--------LLYRMDTAGIFDIKWSPV 77 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~-~~--------~~~~~~~~~v~~~~~~~~ 77 (331)
...+.+.+++|+|.+ ++|++|+ .||.|++||+...... .. ....+|.+.|++++|+|+
T Consensus 96 ~~~~~V~~v~~sp~g---~~l~sgs----------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 96 FVPGKITSIDTDASL---DWMLIGL----------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp ECSSCEEEEECCTTC---SEEEEEE----------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred cCCCCEEEEEECCCC---CEEEEEc----------CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 345678888888776 8999998 8999999999876511 00 123568889999999996
Q ss_pred CCCCCCeEEEEcCCccEEEecCCCcc------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 78 GGNAGPFLAQADADGGLLRDITGEKI------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 78 ~~~~~~~l~~~~~dg~iiw~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
+ ...|++|+.||.++|++.+.+. |...|.+++|+|++++|++|+.||.|++||
T Consensus 163 ~---~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 163 D---IGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp E---EEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred C---CCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 3 4689999999999999987542 236799999999999999999999999999
Q ss_pred ccccceeeeeee---ec-------------ccceeEEEeeCC----CCCcEEEEEcCC-----CeEEEEE----------
Q 020107 134 VVESQLEVLQQW---KA-------------HEFELWATSFDV----HQPHMVYTGSDD-----CKFSGWD---------- 178 (331)
Q Consensus 134 ~~~~~~~~~~~~---~~-------------~~~~v~~~~~~~----~~~~~l~~~~~d-----g~i~i~d---------- 178 (331)
+++++....+.+ .. |...|++++|++ +++.++++|+.+ ..+.+|+
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 988754222222 11 344788888853 122455555433 1444444
Q ss_pred -------------------------------------------------------------ccCCCceee----eecccC
Q 020107 179 -------------------------------------------------------------IRESPFKLA----FQNSKI 193 (331)
Q Consensus 179 -------------------------------------------------------------~~~~~~~~~----~~~~~~ 193 (331)
+.++..... ......
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~ 399 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW 399 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence 332211100 000011
Q ss_pred CCcceEE----------------------------------EEEecCCCCEEEEEecCCeEEEEEecCCCCCc---eeee
Q 020107 194 HKMGVCC----------------------------------IASIPSDSNTLLTGSYDEYLRVWDVRSISKPV---NETS 236 (331)
Q Consensus 194 ~~~~v~~----------------------------------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~ 236 (331)
|...|++ ++|+| ++++|++|+.|++|++||+..+.... ....
T Consensus 400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence 2233444 44567 88999999999999999998753110 1100
Q ss_pred ------eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc------------------------------------
Q 020107 237 ------VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK------------------------------------ 274 (331)
Q Consensus 237 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 274 (331)
..|...|++++|+|++ ..+++++.++.+++|++....
T Consensus 479 l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 479 LSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp HHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred chhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 1688899999999998 778888889999999996531
Q ss_pred -------cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 275 -------AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 275 -------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+++..+.+|.+.|++++|+|++ +||+|+ .|++|++||+++..
T Consensus 558 ~~~~~~g~~~~~~l~~h~~~V~svafSpdG----------~lAsgs-~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 558 PTGVRQGFMPSTAVHANKGKTSAINNSNIG----------FVGIAY-AAGSLMLIDRRGPA 607 (902)
T ss_dssp CTTCSEEEEEEEEECCCSCSEEEEEECBTS----------EEEEEE-TTSEEEEEETTTTE
T ss_pred CCCCCCccceeEEEEcCCCcEEEEEecCCc----------EEEEEe-CCCcEEEEECCCCe
Confidence 03467788999999999999996 899999 99999999998753
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.9e-35 Score=247.74 Aligned_cols=244 Identities=14% Similarity=0.068 Sum_probs=207.2
Q ss_pred EeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcCCCCeEEEEecCCeEEEE
Q 020107 62 YRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNPSATSITVGLSDGSVSIV 132 (331)
Q Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 132 (331)
+..|..+|++++|+|+ +++|++++.|+.+ +|++.+.+ .|...|.+++|+|++++|++++.||.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTT----SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCC----CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 4568899999999999 9999999999999 99998874 268899999999999999999999999999
Q ss_pred EccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee-cccCCCcceEEEEEecCCCCEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ-NSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l 211 (331)
|+++++......+..|...|.+++|+| ++++|++++.|+.|++||++......... ....|...|.+++|+| ++.+|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEE
Confidence 998876555555677899999999998 78999999999999999999876422221 1244899999999999 99999
Q ss_pred EEEecCCeEEEEEecC-----------------CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc
Q 020107 212 LTGSYDEYLRVWDVRS-----------------ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK 274 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
++++.|+.|++||++. ...++.. +..|...|.+++|+|++ ..+++++.++.+++|++..
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-- 233 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADK-- 233 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGG--
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCC--
Confidence 9999999999999752 1123333 45789999999999997 6788888888899999876
Q ss_pred cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
++.+..+..|...|.+++|+|++ .+|+++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~--~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETLPLLAVTFITES---------SLVAAG--HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSCCEEEEEEEETT---------EEEEEE--TTSSCEEEEEET
T ss_pred CceeEEEccCCCCeEEEEEecCC---------CEEEEE--eCCeEEEEEccC
Confidence 57888899999999999999998 566655 599999999987
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.4e-35 Score=263.39 Aligned_cols=277 Identities=14% Similarity=0.147 Sum_probs=232.5
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc----ccceEEeEeeecCc-EeEEEEcC--CCCC
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE----EKNLELLYRMDTAG-IFDIKWSP--VGGN 80 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~----~~~~~~~~~~~~~~-v~~~~~~~--~~~~ 80 (331)
..+.+.+++|+|.+ ++||+++ ++.|++|++.+. . ....+.+|... |++++|+| +
T Consensus 17 ~~~~v~~~~~spdg---~~l~~~~-----------~~~v~v~~~~~~~~~~~--~~~~~~~h~~~~v~~~~~sp~~~--- 77 (615)
T 1pgu_A 17 QRNFTTHLSYDPTT---NAIAYPC-----------GKSAFVRCLDDGDSKVP--PVVQFTGHGSSVVTTVKFSPIKG--- 77 (615)
T ss_dssp CTTCCCCCEEETTT---TEEEEEE-----------TTEEEEEECCSSCCSSC--SEEEECTTTTSCEEEEEECSSTT---
T ss_pred ccCceeEEEECCCC---CEEEEec-----------CCeEEEEECCCCCCccc--cceEEecCCCceEEEEEECcCCC---
Confidence 45678899999987 8999997 889999999876 4 33445789999 99999999 8
Q ss_pred CCCeEEEEcCCccE-EEecCCC--------c------ccCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceee
Q 020107 81 AGPFLAQADADGGL-LRDITGE--------K------ISSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEV 141 (331)
Q Consensus 81 ~~~~l~~~~~dg~i-iw~~~~~--------~------~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~ 141 (331)
+++|++++.||.+ +|++.+. . .|...|.+++|+|++++|++++.+ +.|++||. + ..
T Consensus 78 -~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~--~~ 152 (615)
T 1pgu_A 78 -SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G--NS 152 (615)
T ss_dssp -CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C--CE
T ss_pred -CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C--Cc
Confidence 8999999999999 9999643 1 257889999999999999999987 78999983 3 24
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEecCC-CCEEEEEecC
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASIPSD-SNTLLTGSYD 217 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~~l~~~~~d 217 (331)
+..+.+|...|.+++|+|.+...+++++.|+.|++||+++++....+.. |.. .|.+++|+| + +++|++++.|
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~~l~~~~~d 228 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSP-DSGEFVITVGSD 228 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS---SSCTTCCEEEEEECS-TTCCEEEEEETT
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc---cCCCCceEEEEEECC-CCCCEEEEEeCC
Confidence 6778899999999999994444899999999999999998877766665 888 999999999 7 9999999999
Q ss_pred CeEEEEEecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC----Ccceee
Q 020107 218 EYLRVWDVRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH----GSLAYG 290 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~ 290 (331)
+.|++||++++ +++..+.. .|...|.+++|+ ++ ..+++++.++.+++|++.. ++.+..+..+ ...+.+
T Consensus 229 g~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 229 RKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTT--SKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp CCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTT--TEEEEEEECCTTCGGGCEEE
T ss_pred CeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcccCceeE
Confidence 99999999985 55555224 899999999999 65 6777777888899999876 5677777765 467888
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+.|. ++ .++++++ .|+.|++||+.++.
T Consensus 304 ~~~~-~~---------~~l~~~~-~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 304 VVAT-GN---------GRIISLS-LDGTLNFYELGHDE 330 (615)
T ss_dssp EEEE-ET---------TEEEEEE-TTSCEEEEETTEEE
T ss_pred EEeC-CC---------CeEEEEE-CCCCEEEEECCCCc
Confidence 8886 55 6999999 99999999988643
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.3e-34 Score=250.52 Aligned_cols=256 Identities=14% Similarity=0.251 Sum_probs=219.5
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK 102 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~ 102 (331)
+++|++|+ .||.|++||+.+.+ ......+|...|.+++|+++ +|++|+.||.+ +|++.+.+
T Consensus 129 g~~l~sg~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~------~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 129 GNRIVSGS----------DDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp TTEEEEEE----------TTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTE
T ss_pred CCEEEEEE----------CCCcEEEEECCCCc--EEEEEcCCCCCEEEEEecCC------EEEEEeCCCeEEEEECCcCc
Confidence 48999998 79999999998875 44445789999999999865 99999999999 99998765
Q ss_pred c------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 103 I------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 103 ~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
. |...|.++.|+ ++.+++|+.||.|++||+.+++. +..+.+|...|.+++| ++..+++++.||.|++
T Consensus 191 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 191 CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC--LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE--EEEEECCSSCEEEEEE---CSSCEEEEETTSCEEE
T ss_pred EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE--EEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEE
Confidence 3 67889999995 57899999999999999998754 7778889999999998 3578999999999999
Q ss_pred EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107 177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
||+++++....+.. |...|.++.| ++.++++++.|+.|++||++++ +++.. +..|...+.++.+++ ..+
T Consensus 264 wd~~~~~~~~~~~~---~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~v~~~~~~~---~~l 332 (445)
T 2ovr_B 264 WDPETETCLHTLQG---HTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG-NCIHT-LTGHQSLTSGMELKD---NIL 332 (445)
T ss_dssp EEGGGTEEEEEECC---CSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC-CEEEE-ECCCCSCEEEEEEET---TEE
T ss_pred EECCCCcEeEEecC---CCCceEEEEE---CCCEEEEEeCCCeEEEEECCCC-CEEEE-EcCCcccEEEEEEeC---CEE
Confidence 99999887777765 9999999999 5789999999999999999985 44443 478889999999864 578
Q ss_pred EEEEecCcEEEEEEcCcccceeEEeec---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 257 LAACMHNGFAVVKVGGEKAEVLETYAK---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++++.++.+++|++.. ++.+..+.+ |...|++++|++ ++|++++ .||.|++||+.++..
T Consensus 333 ~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~-----------~~l~s~~-~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFNK-----------NFVITSS-DDGTVKLWDLKTGEF 394 (445)
T ss_dssp EEEETTSCEEEEETTT--CCEEEEECSTTSCSSCEEEEEECS-----------SEEEEEE-TTSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCC--CcEEEEEccCCCCCCCEEEEEECC-----------CEEEEEe-CCCeEEEEECCCCce
Confidence 8888889999999876 577778876 888999999963 4899999 999999999988753
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-36 Score=256.38 Aligned_cols=245 Identities=12% Similarity=0.073 Sum_probs=193.4
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--c------ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--K------ISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
+...+..+|++++|+|+ +++|++++.|+.+ +|++.+. + .|...|.+++|+|++++|++++.|+.|++
T Consensus 6 ~~~~~~~~v~~~~~s~~----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ----RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEEECSSCCSCCEECSS----SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred eEecCCCcEEEEEECCC----CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 34557789999999999 8999999999999 9999875 2 26889999999999999999999999999
Q ss_pred EEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC-CCcceEEEEEecCCCC
Q 020107 132 VSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI-HKMGVCCIASIPSDSN 209 (331)
Q Consensus 132 ~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 209 (331)
||+.+++ ..+...+..|...|.+++|+| ++++|++++.|+.|++||+++++.......... |...|.+++|+| ++.
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCC
Confidence 9999876 445667778999999999999 889999999999999999998763222222233 899999999999 999
Q ss_pred EEEEEecCCeEEEEEecCCC-----------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 210 TLLTGSYDEYLRVWDVRSIS-----------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+|++++.|+.|++||++... .++.. + .|...|.+++|+|++ .++++++.++.+++|++..
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE-Y-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC-C-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECS
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc-c-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCC
Confidence 99999999999999996321 12222 2 889999999999997 6777888888999999987
Q ss_pred ccc--ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 273 EKA--EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 273 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
... ..+..+.+|...|++++|+|++ ++|++++ .|+.+ +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~-~~~~~-~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANES---------AIVAAGY-NYSPI-LLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETT---------EEEEEES-SSSEE-EECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCC---------CEEEEEc-CCcEE-EEEeC
Confidence 522 1277788999999999999998 7888887 66665 66654
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-35 Score=266.60 Aligned_cols=247 Identities=16% Similarity=0.203 Sum_probs=205.6
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------ccCccEEEEEEcCCCCeEEEEec
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------ISSSMCLCLEWNPSATSITVGLS 125 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~ 125 (331)
....+++|.+.|++++|+|++ .++|++|+.|+.+ +|++.... .|...|.+++|+|++++|++|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~---~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDN---ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTC---CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred hhhhcccCCceeEEEEecCCC---CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 334568899999999999984 5799999999999 99987532 27888999999999999999999
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
||+|++||+.+++. ...+.+|...|.+++|+| ++.+|++++.|+.|++||..............+|...|.+++|+|
T Consensus 451 Dg~v~vwd~~~~~~--~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 451 DGELRLWDLAAGVS--TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp TSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred CCcEEEEECCCCcc--eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 99999999998754 778889999999999999 789999999999999999876543333333345899999999999
Q ss_pred CCC--CEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec
Q 020107 206 SDS--NTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK 283 (331)
Q Consensus 206 ~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (331)
++ ..|++++.|++|++||+++. +... .+..|.+.|++++|+|++ .++++++.++.+++|++.. ++.+..+..
T Consensus 528 -~~~~~~l~s~s~d~~v~vwd~~~~-~~~~-~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~--~~~~~~~~~ 601 (694)
T 3dm0_A 528 -NTLQPTIVSASWDKTVKVWNLSNC-KLRS-TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE--GKKLYSLEA 601 (694)
T ss_dssp -CSSSCEEEEEETTSCEEEEETTTC-CEEE-EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT--TEEEECCBC
T ss_pred -CCCcceEEEEeCCCeEEEEECCCC-cEEE-EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC--CceEEEecC
Confidence 54 68999999999999999975 3333 357899999999999997 6777888888999999877 456666554
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...|.+++|+|++ .+|++++ |+.|++||+.++.
T Consensus 602 -~~~v~~~~~sp~~---------~~l~~~~--~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 602 -NSVIHALCFSPNR---------YWLCAAT--EHGIKIWDLESKS 634 (694)
T ss_dssp -SSCEEEEEECSSS---------SEEEEEE--TTEEEEEETTTTE
T ss_pred -CCcEEEEEEcCCC---------cEEEEEc--CCCEEEEECCCCC
Confidence 5679999999997 5666655 7889999998764
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.4e-35 Score=262.30 Aligned_cols=276 Identities=16% Similarity=0.184 Sum_probs=214.3
Q ss_pred cceeEeeecC-CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe---eecCcEeEEEEcCCCCCCCCeEE
Q 020107 11 NADAVEFCPQ-DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR---MDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 11 ~~~~v~~~~~-~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+.+++|+|. + ++|++|+ .+|.|++||+.+.+ .+..+.. .|...|.+++|+ + +.+|+
T Consensus 208 ~v~~~~~~~~~~---~~l~~~~----------~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~----~~~l~ 268 (615)
T 1pgu_A 208 FVRDVEFSPDSG---EFVITVG----------SDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-D----SQKFA 268 (615)
T ss_dssp CEEEEEECSTTC---CEEEEEE----------TTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-S----SSEEE
T ss_pred eEEEEEECCCCC---CEEEEEe----------CCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-C----CCEEE
Confidence 5778888887 5 8999998 79999999998875 3444425 789999999999 7 88999
Q ss_pred EEcCCccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 87 QADADGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+++.||.+ +|++.+.+. ....+.++.|. +++.+++++.||.|++||+.+++ ++..+.+|...|.++
T Consensus 269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDE--VLKTISGHNKGITAL 345 (615)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEE--EEEEECCCSSCEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCc--EEEEEeCCCCCEEEE
Confidence 99999999 999987653 13667888886 88999999999999999998754 355555555555555
Q ss_pred eeCCC--------------------------------CCcEEEEEcCCCeEEEEEc------------------------
Q 020107 156 SFDVH--------------------------------QPHMVYTGSDDCKFSGWDI------------------------ 179 (331)
Q Consensus 156 ~~~~~--------------------------------~~~~l~~~~~dg~i~i~d~------------------------ 179 (331)
+| |. .+..+++++.|+.|++||+
T Consensus 346 ~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 346 TV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp ET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred Ee-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence 54 31 1344445554554444444
Q ss_pred --------------------------------------------------cCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 180 --------------------------------------------------RESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 180 --------------------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
.+++... .....|...|.+++|+| ++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~g~ 501 (615)
T 1pgu_A 425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISP-SET 501 (615)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECT-TSS
T ss_pred CCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECC-CCC
Confidence 3332110 22245889999999999 999
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeee-cCCceEEEEECC----------CCCCeEEEEEecCcEEEEEEcCccccee
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVC-LGGGVWRIKHHP----------FIPGLVLAACMHNGFAVVKVGGEKAEVL 278 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
+|++++.|+.|++||+.+. +++.. +.. |...|++++|+| ++ .++++++.++.+++|++... .+.+
T Consensus 502 ~l~~~~~dg~i~iw~~~~~-~~~~~-~~~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-~~~~ 577 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSR-EVKTS-RWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRP-MKII 577 (615)
T ss_dssp EEEEEETTSCEEEEETTTT-EEEEC-CSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCT-TCCE
T ss_pred EEEEcCCCCeEEEeeCCCC-cceeE-eecCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCC-ceec
Confidence 9999999999999999985 44444 344 999999999999 76 67777778889999999774 3778
Q ss_pred EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..+.+|...|++++|+|++ + |++++ .|+.|++|+++.+
T Consensus 578 ~~~~~h~~~v~~l~~s~~~---------~-l~s~~-~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 578 KALNAHKDGVNNLLWETPS---------T-LVSSG-ADACIKRWNVVLE 615 (615)
T ss_dssp EETTSSTTCEEEEEEEETT---------E-EEEEE-TTSCEEEEEEC--
T ss_pred hhhhcCccceEEEEEcCCC---------C-eEEec-CCceEEEEeeecC
Confidence 8899999999999999998 7 99999 9999999998753
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=246.62 Aligned_cols=283 Identities=12% Similarity=0.035 Sum_probs=220.2
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc--ceEEeE-----------------------
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK--NLELLY----------------------- 62 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~--~~~~~~----------------------- 62 (331)
+..++.+|+|+|.+ ++|+++. ++.|++||+.+++. .+....
T Consensus 3 ~~~p~~~v~~s~dg---~~l~~~~-----------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (450)
T 2vdu_B 3 VIHPLQNLLTSRDG---SLVFAII-----------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSE 68 (450)
T ss_dssp EECCCCEEEECSSS---SEEEEEE-----------TTEEEEEEEETTTEEEEEEEEECCC--------------------
T ss_pred ccccEEEEEecCCC---CEEEEEe-----------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccc
Confidence 45678899998887 7888776 88999999877651 011110
Q ss_pred ------------------------------eeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecC--CCcc-----
Q 020107 63 ------------------------------RMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDIT--GEKI----- 103 (331)
Q Consensus 63 ------------------------------~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~--~~~~----- 103 (331)
..|...|++++|+|+ +++| ++++.||.+ +|++. +.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~ 144 (450)
T 2vdu_B 69 NENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD----ESRLIACADSDKSLLVFDVDKTSKNVLKLRK 144 (450)
T ss_dssp -------------------------------CCCCCEEEEEECTT----SSEEEEEEGGGTEEEEEEECSSSSSCEEEEE
T ss_pred ccccccccccCcCccccccCccccCCCCCCCccCCceEEEEEcCC----CCEEEEEECCCCeEEEEECcCCCCceeeeee
Confidence 123447999999999 8885 899999999 99998 5432
Q ss_pred ---cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee--eeeeeecccceeEEEeeCCCC---CcEEEEEcCCCeEE
Q 020107 104 ---SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE--VLQQWKAHEFELWATSFDVHQ---PHMVYTGSDDCKFS 175 (331)
Q Consensus 104 ---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~ 175 (331)
+...|.+++|+|++++|++|+.+|.|++|++.+++.. +...+.+|...|++++|+| + +.+|++++.|+.|+
T Consensus 145 ~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 145 RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEE
T ss_pred cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEE
Confidence 3578999999999999999999999999999876532 3346778999999999999 6 78999999999999
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee------------------
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV------------------ 237 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------ 237 (331)
+||+++++....+. .+|...|.+++|+ ++.+|++++.|+.|++||++++ +.+..+..
T Consensus 224 vwd~~~~~~~~~~~--~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 224 ISHYPQCFIVDKWL--FGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp EEEESCTTCEEEEC--CCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----
T ss_pred EEECCCCceeeeee--cCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccc
Confidence 99999887665533 2399999999999 8899999999999999999985 43433211
Q ss_pred ------ecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc---ceeEEeecCCcceeeeeecCCCCcccccccCc
Q 020107 238 ------CLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA---EVLETYAKHGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 238 ------~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
.....|.+++|+|++ ..+++++ .++.+++|++.+... ..+..+..| ..|.+++|+|++
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~---------- 366 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE---------- 366 (450)
T ss_dssp ------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE----------
T ss_pred cccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc----------
Confidence 234578999999987 5666666 788899999932223 667778887 889999999964
Q ss_pred EEEEeecC------CCeEEEEcCCC
Q 020107 308 LVATCSFY------DRLLRIWMPES 326 (331)
Q Consensus 308 ~l~s~~~~------d~~i~iW~~~~ 326 (331)
++++.+.. +..|.+|.++.
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 66665413 45588887643
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7e-34 Score=246.00 Aligned_cols=265 Identities=14% Similarity=0.219 Sum_probs=223.3
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+.+.++.|. +++|++|+ .||.|++||+.+++ ......+|...|.++.|++. .|++++
T Consensus 160 ~~v~~~~~~-----~~~l~s~~----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~------~l~s~s 216 (445)
T 2ovr_B 160 GGVWSSQMR-----DNIIISGS----------TDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEK------RVVSGS 216 (445)
T ss_dssp SCEEEEEEE-----TTEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETT------EEEEEE
T ss_pred CCEEEEEec-----CCEEEEEe----------CCCeEEEEECCcCc--EEEEECCCCCcEEEEEecCC------EEEEEe
Confidence 445566664 26899998 79999999998875 34445789999999999765 899999
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.||.+ +|++.+.+. |...+.+++| +++.+++|+.||.|++||+++++ .+..+.+|...|.+++| ++
T Consensus 217 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~ 289 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DG 289 (445)
T ss_dssp TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CS
T ss_pred CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CC
Confidence 99999 999987653 6788999999 78899999999999999999874 47788889999999999 45
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---c
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---L 239 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~ 239 (331)
..+++++.|+.|++||+++++....+.. |...+.++.++ ++++++++.||.|++||++++ +++.. +.. |
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~-~~~~~-~~~~~~~ 361 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELK---DNILVSGNADSTVKIWDIKTG-QCLQT-LQGPNKH 361 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEEEE---TTEEEEEETTSCEEEEETTTC-CEEEE-ECSTTSC
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEcC---CcccEEEEEEe---CCEEEEEeCCCeEEEEECCCC-cEEEE-EccCCCC
Confidence 7899999999999999999987777766 89999988875 569999999999999999885 44444 233 8
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-----ecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-----AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
...|.+++|++ ..+++++.++.+++|++.. ++.+..+ .+|.+.|++++|+|++ .++++++
T Consensus 362 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~la~~~- 426 (445)
T 2ovr_B 362 QSAVTCLQFNK---NFVITSSDDGTVKLWDLKT--GEFIRNLVTLESGGSGGVVWRIRASNTK---------LVCAVGS- 426 (445)
T ss_dssp SSCEEEEEECS---SEEEEEETTSEEEEEETTT--CCEEEEEEECTTGGGTCEEEEEEECSSE---------EEEEEEC-
T ss_pred CCCEEEEEECC---CEEEEEeCCCeEEEEECCC--CceeeeeeccccCCCCceEEEEEecCCE---------EEEEEcc-
Confidence 88999999975 6788888888899999877 4666666 4788999999999998 7999999
Q ss_pred CCCe----EEEEcCCCc
Q 020107 315 YDRL----LRIWMPESD 327 (331)
Q Consensus 315 ~d~~----i~iW~~~~~ 327 (331)
.||+ |.+||++..
T Consensus 427 ~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSSSSCCEEEEEECCCC
T ss_pred cCCCCccEEEEEECCCC
Confidence 9998 999999865
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=243.24 Aligned_cols=248 Identities=18% Similarity=0.198 Sum_probs=203.5
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.+.+++|+|.+ ++||+|+ .||.|++|++............+|...|++++|+|+.. +.+|++
T Consensus 10 h~~~v~~~~~s~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s 74 (379)
T 3jrp_A 10 HNELIHDAVLDYYG---KRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS 74 (379)
T ss_dssp CCCCEEEEEECSSS---SEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG--CSEEEE
T ss_pred CcccEEEEEEcCCC---CEEEEEE----------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC--CCEEEE
Confidence 45567788887766 8999998 79999999998544345555678999999999986521 569999
Q ss_pred EcCCccE-EEecCCCcc--------cCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 88 ADADGGL-LRDITGEKI--------SSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
++.||.+ +|++.+.+. |...|.+++|+|+ ++.|++++.||.|++||+..+.......+..|...|.+++
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 9999999 999988641 6788999999999 9999999999999999999875545566778999999999
Q ss_pred eCCC------------CCcEEEEEcCCCeEEEEEccCCCceee-eecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107 157 FDVH------------QPHMVYTGSDDCKFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL 220 (331)
Q Consensus 157 ~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i 220 (331)
|+|. ++.++++++.|+.|++||++++..... ......|...|.+++|+| + +.+|++++.|+.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTC 233 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEETTSCE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC-CCCCCCeEEEEeCCCEE
Confidence 9985 578999999999999999997764322 222345999999999999 7 8999999999999
Q ss_pred EEEEecCCCCCceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 221 RVWDVRSISKPVNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 221 ~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
++||++....+.... ...|...|++++|+|++ ..+++++.++.+++|++..
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 999999864332221 12378899999999997 6777888899999999873
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=243.52 Aligned_cols=251 Identities=16% Similarity=0.221 Sum_probs=202.8
Q ss_pred ceEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEcC---CccE-EEecCCCcc-------cCccEEEEEEcCC---CCeEE
Q 020107 57 NLELLYRMDTAGIFDIKWSPVGGNAG-PFLAQADA---DGGL-LRDITGEKI-------SSSMCLCLEWNPS---ATSIT 121 (331)
Q Consensus 57 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~---dg~i-iw~~~~~~~-------~~~~v~~~~~~~~---~~~l~ 121 (331)
.+..+..+|...|.+++|+|+ + .++++++. ||.+ +|++.+.+. |...|.+++|+|+ +++|+
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~----~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPC----SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTT----SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred HhhhhccCCCCceEEEEEcCC----CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEE
Confidence 455666889999999999998 5 45667776 8999 999987654 5779999999998 69999
Q ss_pred EEecCCeEEEEEccccceeeeeeeecccceeEEEe------eCCCCCcEEEEEcCCCeEEEEEccCCC-ceeeeecccC-
Q 020107 122 VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS------FDVHQPHMVYTGSDDCKFSGWDIRESP-FKLAFQNSKI- 193 (331)
Q Consensus 122 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~- 193 (331)
+|+.||.|++||+.+++ ..+..+.+|...|.+++ |+| ++++|++++.|+.|++||+++++ ....+.....
T Consensus 85 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp EEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred EecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 99999999999999875 24677889999999995 566 77899999999999999999876 4555544111
Q ss_pred CCcceEEEE----EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEE
Q 020107 194 HKMGVCCIA----SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFA 266 (331)
Q Consensus 194 ~~~~v~~~~----~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~ 266 (331)
+...+.++. |+| ++.+|++++.|+.|++||+++. +... ...|...|.+++|+| ++ ..+++++.++.++
T Consensus 163 ~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNM-ALRW--ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFH 237 (357)
T ss_dssp CCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTT-EEEE--EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEE
T ss_pred CCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccC-ceee--ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEE
Confidence 234899998 677 8999999999999999999985 3333 378899999999999 65 7788888889999
Q ss_pred EEEEcCcccce---eEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 267 VVKVGGEKAEV---LETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 267 ~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
+|++....... ...+.+|...|++++|+|++. .+|++++ .||.|++||+.++
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~-~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAG-GAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEE-TTSEEEEEEEECC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEe-CCCcEEEeecCCC
Confidence 99997642111 123448999999999999983 3899999 9999999998754
No 85
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-36 Score=262.06 Aligned_cols=243 Identities=13% Similarity=0.135 Sum_probs=188.8
Q ss_pred ecCcEeEEEEcCCCCCCC-----CeEEE-------------------EcCCccE-EEecCCCcc----------cCccEE
Q 020107 65 DTAGIFDIKWSPVGGNAG-----PFLAQ-------------------ADADGGL-LRDITGEKI----------SSSMCL 109 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~-----~~l~~-------------------~~~dg~i-iw~~~~~~~----------~~~~v~ 109 (331)
+.+.|.+|+|+|+.+... ++||+ ++.|+.+ ||++.+.+. |...|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 467788888888731100 45555 5567778 999977642 357799
Q ss_pred EEEEcCC------CCeEEEEecCCeEEEEEccccce---------eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 110 CLEWNPS------ATSITVGLSDGSVSIVSVVESQL---------EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 110 ~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
+++|+|+ +.+||+++.||+|++||+..+.. .+...+.+|...|++++|+| + ..|++|+.||+|
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV 289 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFV 289 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEE
Confidence 9999996 57899999999999999986532 12346778999999999997 4 589999999999
Q ss_pred EEEEccCCCc-eeeeecccCCCcceEEE--EEecCCC-CEEEEEecCCeEEEEEecCCCCCceeeeeecC--CceEEEEE
Q 020107 175 SGWDIRESPF-KLAFQNSKIHKMGVCCI--ASIPSDS-NTLLTGSYDEYLRVWDVRSISKPVNETSVCLG--GGVWRIKH 248 (331)
Q Consensus 175 ~i~d~~~~~~-~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~ 248 (331)
++||++++.. ...+.. |...|++| .|+| ++ .+|++++.|++|++||+++. ++... +..|. ..|.+++|
T Consensus 290 ~lWD~~~~~~~~~~~~~---H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~-~~~~~-~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 290 AEFDLTDPEVPSFYDQV---HDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDI-ATTKT-TVSRFRGSNLVPVVY 363 (524)
T ss_dssp EEEETTBCSSCSEEEEC---SSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGH-HHHCE-EEEECSCCSCCCEEE
T ss_pred EEEECCCCCCceEEeec---ccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCC-Ccccc-cccccccCcccceEe
Confidence 9999997643 233454 99999999 5677 76 89999999999999999985 33333 24554 35889999
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+|++ ..+++++.++.+++|++.. +..+.++.+|.+.|++++|+|++ ++|++|+ .|++|++||+....
T Consensus 364 sp~~-~~l~s~~~d~tv~lwd~~~--~~~~~~l~gH~~~V~sva~Sp~g---------~~l~Sgs-~Dgtv~lwd~~~~~ 430 (524)
T 2j04_B 364 CPQI-YSYIYSDGASSLRAVPSRA--AFAVHPLVSRETTITAIGVSRLH---------PMVLAGS-ADGSLIITNAARRL 430 (524)
T ss_dssp ETTT-TEEEEECSSSEEEEEETTC--TTCCEEEEECSSCEEEEECCSSC---------CBCEEEE-TTTEEECCBSCSST
T ss_pred CCCc-CeEEEeCCCCcEEEEECcc--cccceeeecCCCceEEEEeCCCC---------CeEEEEE-CCCEEEEEechHhh
Confidence 9986 5677777888899999876 46667788999999999999998 6999999 99999999987653
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-35 Score=248.13 Aligned_cols=245 Identities=16% Similarity=0.163 Sum_probs=196.0
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCC-CeEEEEcCCccE-EEecCCCcc--------cCccEEEEEEcC-CCCeEEEEecC
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAG-PFLAQADADGGL-LRDITGEKI--------SSSMCLCLEWNP-SATSITVGLSD 126 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i-iw~~~~~~~--------~~~~v~~~~~~~-~~~~l~~~~~d 126 (331)
+.....+|...|++++|+|+ + ++|++|+.||.+ +|++.+.+. |...|.+++|+| +++.|++++.|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPT----HPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEEECCCSSCEEEEEECSS----CTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred eEEeccCCCCCEEEEEECCC----CCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34455789999999999999 6 899999999999 999986532 678999999999 67899999999
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
+.|++||+++.....+.....|...|.+++|+| ++.+|++++.|+.|++||++ ++....+.. |...|.+++|+|
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---h~~~v~~~~~~~- 214 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKL---HKAKVTHAEFNP- 214 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEEC---SSSCEEEEEECS-
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEecc---CCCcEEEEEECC-
Confidence 999999999654333333334558899999999 88999999999999999995 555666655 999999999999
Q ss_pred CCC-EEEEEecCCeEEEEEecCCC---CCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107 207 DSN-TLLTGSYDEYLRVWDVRSIS---KPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 207 ~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (331)
++. +|++++.|+.|++||+++.+ ..+.. ..|...|.+++|+| ++ ..+++++.++.+++|++... +....+
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~--~~~~~~ 289 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDW--SKPDQI 289 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBT--TSCSEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCC--cccccc
Confidence 777 99999999999999999843 22333 47999999999999 76 77888888899999998764 333444
Q ss_pred ecCC-----------------cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 282 AKHG-----------------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 282 ~~h~-----------------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+|. ..+..++|+|++ ++ +++ .|+.|++||+.++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg---------~~--s~s-~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD---------QL--LLN-DKRTIDIYDANSGGL 342 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCT---------TT--CTT-CCCCEEEEETTTCCE
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCc---------cc--ccC-CCCeEEEEecCCCce
Confidence 4332 233346666665 34 778 899999999987653
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.8e-35 Score=247.91 Aligned_cols=252 Identities=15% Similarity=0.215 Sum_probs=208.8
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCC----CCeEEEE
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPS----ATSITVG 123 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~----~~~l~~~ 123 (331)
.+..+|...|++++|+|+.+.+...+++++.++.+ +|++.+.+. +...|.+++|+|+ +++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 55568999999999998421114567777777788 999986543 3477999999998 6689999
Q ss_pred ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107 124 LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS 203 (331)
Q Consensus 124 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 203 (331)
+.||.|++||+.+++. +..+.+|...|.+++|+|.++++|++++.||.|++||+++++....+.....|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQC--IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCE--EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceE--eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 9999999999998754 77788899999999999867899999999999999999998877666433449999999999
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCCCCcee---------------------------eeeecCCceEEEEECCCCCCeE
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNE---------------------------TSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
+| ++.+|++++.|+.|++||+++.+ .... ....|...|.+++|++ ..+
T Consensus 170 ~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 244 (366)
T 3k26_A 170 DL-LGEKIMSCGMDHSLKLWRINSKR-MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLI 244 (366)
T ss_dssp CT-TSSEEEEEETTSCEEEEESCSHH-HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEE
T ss_pred CC-CCCEEEEecCCCCEEEEECCCCc-cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC---CEE
Confidence 99 99999999999999999998742 1111 1123889999999992 688
Q ss_pred EEEEecCcEEEEEEcCccc------------ceeEEeecCCcceeeeeecCC--CCcccccccCcEEEEeecCCCeEEEE
Q 020107 257 LAACMHNGFAVVKVGGEKA------------EVLETYAKHGSLAYGADWQRG--RSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
++++.++.+++|++..... ..+..+.+|...|++++|+|+ + ++|++++ .||.|++|
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~~l~~~~-~dg~i~vw 314 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ---------KMLALGN-QVGKLYVW 314 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS---------SEEEEEC-TTSCEEEE
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC---------cEEEEEe-cCCcEEEE
Confidence 8888899999999977432 457888899999999999999 7 7999999 99999999
Q ss_pred cCCCcc
Q 020107 323 MPESDC 328 (331)
Q Consensus 323 ~~~~~~ 328 (331)
|+.++.
T Consensus 315 d~~~~~ 320 (366)
T 3k26_A 315 DLEVED 320 (366)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 998864
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-35 Score=286.05 Aligned_cols=274 Identities=14% Similarity=0.139 Sum_probs=234.5
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.+++++|.+ +++++|+ .+|.|++|++.... ......+|...|++++|+|+ +++|+++
T Consensus 961 ~~~i~~~~~sp~g---~~l~~g~----------~~g~i~i~d~~~~~--~~~~~~~h~~~v~~l~~s~d----g~~l~s~ 1021 (1249)
T 3sfz_A 961 EAQVSCCCLSPHL---EYVAFGD----------EDGAIKIIELPNNR--VFSSGVGHKKAVRHIQFTAD----GKTLISS 1021 (1249)
T ss_dssp CSCEEEEEECTTS---SEEEEEE----------TTSCCEEEETTTTS--CEEECCCCSSCCCCEEECSS----SSCEEEE
T ss_pred cCcEEEEEEcCCC---CEEEEEc----------CCCCEEEEEcCCCc--eeeecccCCCceEEEEECCC----CCEEEEE
Confidence 4567788888876 8999998 79999999998875 44445789999999999999 8999999
Q ss_pred cCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 89 DADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
+.||.+ +|++.+.+. |...+.++.|+|++ .+++++.||.|++||+.+++. ...+.+|...|.+++|+| ++
T Consensus 1022 ~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~s~-d~ 1097 (1249)
T 3sfz_A 1022 SEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI--ERDFTCHQGTVLSCAISS-DA 1097 (1249)
T ss_dssp CSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC--CEEEECCSSCCCCEEECS-SS
T ss_pred cCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce--eEEEcccCCcEEEEEECC-CC
Confidence 999999 999987654 67889999999965 578899999999999998864 777888999999999999 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee-------
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET------- 235 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------- 235 (331)
.++++++.|+.|++||+.+++....+.. |...|++++|+| ++.+|++++.||.|++||+.+++ .+...
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~~~~l~~---h~~~v~~~~~s~-dg~~lat~~~dg~i~vwd~~~~~-~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSPLHELKG---HNGCVRCSAFSL-DGILLATGDDNGEIRIWNVSDGQ-LLHSCAPISVEE 1172 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSCSBCCCC---CSSCEEEEEECS-SSSEEEEEETTSCCCEEESSSSC-CCCCCCCCC---
T ss_pred CEEEEEcCCCcEEEEECCCcceeeeecc---CCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCCCc-eEEEeccccccc
Confidence 8999999999999999999887777766 999999999999 99999999999999999999853 33221
Q ss_pred -eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec
Q 020107 236 -SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 236 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 314 (331)
...|.+.|++++|+|++ ..++++ + +.+++|++.. ++.+..+..|...|++++|+|++ ++|++++
T Consensus 1173 ~~~~~~~~v~~l~fs~dg-~~l~s~-~-g~v~vwd~~~--g~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~- 1237 (1249)
T 3sfz_A 1173 GTATHGGWVTDVCFSPDS-KTLVSA-G-GYLKWWNVAT--GDSSQTFYTNGTNLKKIHVSPDF---------RTYVTVD- 1237 (1249)
T ss_dssp ----CCSCCCEEEECTTS-SCEEEE-S-SSEEEBCSSS--CBCCCCCCCSSCCCCCCEECSSS---------CCEEEEC-
T ss_pred cccccCceEEEEEECCCC-CEEEEC-C-CeEEEEECCC--CceeeeeeccCCcccEEEECCCC---------CEEEEec-
Confidence 25688999999999996 444444 3 7888888776 57777888899999999999998 6999999
Q ss_pred CCCeEEEEcCC
Q 020107 315 YDRLLRIWMPE 325 (331)
Q Consensus 315 ~d~~i~iW~~~ 325 (331)
.||.|++|++.
T Consensus 1238 ~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1238 NLGILYILQVL 1248 (1249)
T ss_dssp TTCCEEEECCC
T ss_pred CCcEEEEEeec
Confidence 99999999975
No 89
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=246.85 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=205.2
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEec----CCCcc-------------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDI----TGEKI------------- 103 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~----~~~~~------------- 103 (331)
...+.+|+++... .......|...|++++|+|+ ++ +|++++.||.+ +|++ .+.+.
T Consensus 24 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 1r5m_A 24 NSIDSSDDLDGFV--KILKEIVKLDNIVSSTWNPL----DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP 97 (425)
T ss_dssp ----------CCC--EECEEEEECSCCSEEEECSS----CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred ccccccccchhhh--hheeeeeccCceEEEEECCC----CCcEEEEecCCceEEEEEEecccCCcccccccccccccccc
Confidence 4556777776653 22222456789999999999 88 99999999999 9999 66551
Q ss_pred ---------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 104 ---------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 104 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
|...|.+++|+|++++|++++.||.|++||. +++ .+..+..|...|.+++|+| ++++|++++.|+.|
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 173 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA--LLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVT 173 (425)
T ss_dssp CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCCE
T ss_pred ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC--eeeeccCCCccEEEEEECC-CCCEEEEEecCCeE
Confidence 3558999999999999999999999999994 343 3677888999999999999 78899999999999
Q ss_pred EEEEccCCCceeeee-----------------------------------------------------cccCCCcceEEE
Q 020107 175 SGWDIRESPFKLAFQ-----------------------------------------------------NSKIHKMGVCCI 201 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~-----------------------------------------------------~~~~~~~~v~~~ 201 (331)
++||+++++....+. ....|...|.++
T Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 999998765432211 112478899999
Q ss_pred EEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe
Q 020107 202 ASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (331)
+|+| ++.+|++++.|+.|++||+++. +++.. +..|...|.+++|+|++ .+++++.++.+++|++.. ++.+..+
T Consensus 254 ~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~-~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~--~~~~~~~ 326 (425)
T 1r5m_A 254 EFND-TNKLLLSASDDGTLRIWHGGNG-NSQNC-FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ--NTLLALS 326 (425)
T ss_dssp EEET-TTTEEEEEETTSCEEEECSSSB-SCSEE-ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT--TEEEEEE
T ss_pred EECC-CCCEEEEEcCCCEEEEEECCCC-ccceE-ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC--CcEeEec
Confidence 9999 8999999999999999999985 44444 46799999999999984 788888888899999876 5788888
Q ss_pred ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 282 AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 282 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
..|...|.+++|+|++ ++|++++ .||.|++|++.++.
T Consensus 327 ~~~~~~i~~~~~s~~~---------~~l~~~~-~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 327 IVDGVPIFAGRISQDG---------QKYAVAF-MDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTCCEEEEEECTTS---------SEEEEEE-TTSCEEEEECHHHH
T ss_pred ccCCccEEEEEEcCCC---------CEEEEEE-CCCeEEEEECCCCc
Confidence 8999999999999998 6999999 99999999997654
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-35 Score=249.15 Aligned_cols=264 Identities=10% Similarity=0.066 Sum_probs=208.2
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
+..+..-+.+|+|+|++ +++|+++ .|++|+ +....+ .+ .+|...|++++|+|+ +
T Consensus 11 ~~~~~~~v~sv~~SpDG---~~iASas----------~D~TV~--d~~~~~----~l-~gh~~~v~~V~FsPd----g-- 64 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDG---TLYLTTF----------PDISIG--QPKYAK----DI-NCNSKNLFHVKEFPL----E-- 64 (588)
T ss_dssp SCCCSSSSCCEEECTTS---CEEEECS----------SSEEEE--EECCCS----CC-SSBGGGTEEEEEECC----C--
T ss_pred HhHhhccEEEEEECCCC---CEEEEEc----------CCceee--cccccc----ee-cCCCccEEEEEECCC----C--
Confidence 44677889999999988 8999998 899999 643332 22 689999999999999 7
Q ss_pred EEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-----eeEE
Q 020107 85 LAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-----ELWA 154 (331)
Q Consensus 85 l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~v~~ 154 (331)
.++.. +|+..... .+...|.+++|+|+|+.||+++.||.|++||.+. .+..+. |.. .+.+
T Consensus 65 -----~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -----FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -----CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEE
T ss_pred -----CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEE
Confidence 56666 77655332 2468899999999999999999999999999653 355555 554 4999
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCc-------eeeeec-ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPF-------KLAFQN-SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 226 (331)
++|+| ++++|++|+.||+|++||+.++.. ...+.. ..+|...|.+++|+| ++ +++++.|++|++||+.
T Consensus 135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCC
T ss_pred EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECC
Confidence 99999 899999999999999999998753 233321 144888999999999 77 8888999999999998
Q ss_pred CCCCC--ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeee--cCCCCcccc
Q 020107 227 SISKP--VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADW--QRGRSSLEG 302 (331)
Q Consensus 227 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~ 302 (331)
..... ...+...|...|.+++|+ + ..+++++ ++.+++|++... +......+|...|++++| +|++
T Consensus 211 ~~~~~~~~~tL~~~h~~~V~svaFs-g--~~LASa~-~~tIkLWd~~~~--~~~~~~~gh~~~V~~va~~~s~d~----- 279 (588)
T 2j04_A 211 ASSHQPVSRMIQNASRRKITDLKIV-D--YKVVLTC-PGYVHKIDLKNY--SISSLKTGSLENFHIIPLNHEKES----- 279 (588)
T ss_dssp SSSSCCCEEEEECCCSSCCCCEEEE-T--TEEEEEC-SSEEEEEETTTT--EEEEEECSCCSCCCEEEETTCSSC-----
T ss_pred CCccccceeeecccccCcEEEEEEE-C--CEEEEEe-CCeEEEEECCCC--eEEEEEcCCCceEEEEEeeeCCCC-----
Confidence 75321 122123688899999999 3 6666665 688899988763 332223389999999999 9998
Q ss_pred cccCcEEEEeecCCCeEEEEcCC
Q 020107 303 KRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 303 ~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
..+++++ +||+ ++|..+
T Consensus 280 ----~~La~a~-edG~-klw~~d 296 (588)
T 2j04_A 280 ----TILLMSN-KTSY-KVLLED 296 (588)
T ss_dssp ----EEEEECS-SCEE-EEEESS
T ss_pred ----CEEEEEc-CCCC-EEEeec
Confidence 6899998 9999 999875
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8e-34 Score=236.78 Aligned_cols=258 Identities=14% Similarity=0.207 Sum_probs=204.6
Q ss_pred EEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEE
Q 020107 46 ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEW 113 (331)
Q Consensus 46 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~ 113 (331)
++++.....+..++..+++|.+.|++|+|+|++ +++|++|+.|+.+ +|++...+. |...|.+++|
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~---~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTC---TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCC---CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence 444454444434666678999999999999984 5799999999999 999876432 5788999999
Q ss_pred cCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC
Q 020107 114 NPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 114 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 193 (331)
+|++++|++++.|+.|++|+...... ......+...+....+++ .+..+++++.|+.+++||+..... .... ...
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~-~~~~-~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTT--TRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK-YTVQ-DES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-EEEC-SSS
T ss_pred CCCCCEEEEEcccccceEEeecccce--eeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce-EEEE-ecc
Confidence 99999999999999999999987654 555566777888999998 778999999999999999986543 2222 245
Q ss_pred CCcceEEEEEecCC-CCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 194 HKMGVCCIASIPSD-SNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 194 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
|...+..++|++.. ..++++++.|+.|++||+++. +.+.. +..|.++|++++|+|++ .++++++.++.+++|++..
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~-~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTN-HIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeE-ecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEecc
Confidence 89999999998832 357889999999999999985 33333 57899999999999997 6778888888999999877
Q ss_pred cccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 273 EKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 273 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.+.+..+.. ...|..+.|+|++ .+++++ .|+.|++||++++.
T Consensus 247 --~~~~~~~~~-~~~v~~~~~~~~~----------~~~~~~-~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 247 --GKHLYTLDG-GDIINALCFSPNR----------YWLCAA-TGPSIKIWDLEGKI 288 (340)
T ss_dssp --TEEEEEEEC-SSCEEEEEECSSS----------SEEEEE-ETTEEEEEETTTTE
T ss_pred --CceeeeecC-CceEEeeecCCCC----------ceeecc-CCCEEEEEECCCCe
Confidence 466666665 4679999999986 566666 79999999998753
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=268.10 Aligned_cols=252 Identities=17% Similarity=0.247 Sum_probs=208.9
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC--------cccCccEEEEEEcCC--CCeEEEEecCCe
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE--------KISSSMCLCLEWNPS--ATSITVGLSDGS 128 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~--------~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 128 (331)
.+..+|.+.|++++|+|+ +++|++|+.||.+ +|++... ..|...|.+++|+|+ ++.|++|+.||.
T Consensus 3 ~~l~gH~~~V~~l~~s~d----g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYY----GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp -----CCCCEEEECCCSS----SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eecccCcceeEEEEECCC----CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 355789999999999999 8999999999999 9998743 237889999999988 899999999999
Q ss_pred EEEEEccccceeeeeeeecccceeEEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC-
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS- 206 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 206 (331)
|++||+.+++...+..+..|...|++++|+|.. ++.+++++.||.|++||++++........ ..|...|.++.|+|.
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEECCCC
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEecCcc
Confidence 999999988766678888899999999999932 88999999999999999998754333333 348999999999994
Q ss_pred -----------CCCEEEEEecCCeEEEEEecCCCCC--ceeeeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEc
Q 020107 207 -----------DSNTLLTGSYDEYLRVWDVRSISKP--VNETSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 207 -----------~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 271 (331)
++.+|++|+.||.|++||+++.... ....+..|.+.|++++|+|++ ...+++++.++.+++|++.
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 4889999999999999999986432 222346789999999999993 3788888889999999998
Q ss_pred Ccccc---eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 272 GEKAE---VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 272 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..... .......|...|++++|+|++ ++|++++ .||.|++|++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------~~l~s~s-~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSG-GDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTT---------CCEEEEC-SSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCC---------CEEEEEc-CCCEEEEEecCC
Confidence 75322 223334688999999999998 6999999 999999999985
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.6e-34 Score=266.53 Aligned_cols=247 Identities=17% Similarity=0.244 Sum_probs=214.0
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|...|++++|+|+ +++|++++.||.+ +|++.++.. |...|.+++|+|+++.|++++.||.|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPT----EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEEECSCEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred cceeeecCCCceEEEEECCC----CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 44566899999999999999 9999999999999 999987643 688999999999999999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCC
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
+||+.+++. +..+.+|...|++++|+| ++.+|++++.||.|++||++++ .....+.. |...|.+++|+|.++.
T Consensus 81 vw~~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 81 VFNYNTGEK--VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG---HEHFVMCVAFNPKDPS 154 (814)
T ss_dssp EEETTTCCE--EEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEEC---CSSCEEEEEEETTEEE
T ss_pred EEECCCCcE--EEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcC---CCCcEEEEEEEcCCCC
Confidence 999998754 777888999999999999 7889999999999999999986 33445554 8999999999996678
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC--CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP--FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL 287 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 287 (331)
.|++++.|+.|++||++.. .+.......+...+..++|+| ++ ..+++++.++.+++|++.. ++.+..+.+|...
T Consensus 155 ~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~ 230 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQT--KSCVATLEGHMSN 230 (814)
T ss_dssp EEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTT--TEEEEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCC--CcEEEEEcCCCCC
Confidence 9999999999999999875 444443445558999999999 64 5677777778888888866 5778889999999
Q ss_pred eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 288 AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|.+++|+|++ ++|++++ .||.|++||+.++.
T Consensus 231 v~~~~~~~~~---------~~l~~~~-~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 231 VSFAVFHPTL---------PIIISGS-EDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEEEECSSS---------SEEEEEE-TTSCEEEEETTTCS
T ss_pred EEEEEEcCCC---------CEEEEEe-CCCeEEEEECCCCc
Confidence 9999999998 6999999 99999999998754
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-34 Score=241.75 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=206.1
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----c-----cCccEEEEEEcCCCC-eEEEEecCCeE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----I-----SSSMCLCLEWNPSAT-SITVGLSDGSV 129 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----~-----~~~~v~~~~~~~~~~-~l~~~~~dg~i 129 (331)
+..+|...|++++|+|+ +++|++++.||.+ +|++.... . |...|.+++|+|+++ +|++|+.||.|
T Consensus 6 ~~~~h~~~v~~~~~s~~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEGG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cccCCCCcEEEEEEcCC----CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 34579999999999999 8999999999999 99998766 2 678999999999999 99999999999
Q ss_pred EEEEc-cccceeeeeeeec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC---------CCceeeeecccCCCcc
Q 020107 130 SIVSV-VESQLEVLQQWKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE---------SPFKLAFQNSKIHKMG 197 (331)
Q Consensus 130 ~i~d~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~ 197 (331)
++||+ .+++. ..+.+ |...|.+++|+| ++.+++++.|+.|++||+++ ++....+. |...
T Consensus 82 ~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~ 152 (342)
T 1yfq_A 82 LKVDLIGSPSF---QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----VKNK 152 (342)
T ss_dssp EEECSSSSSSE---EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----SCCC
T ss_pred EEEEeccCCce---EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----eCCc
Confidence 99999 87653 56677 999999999998 68999999999999999987 55444433 7889
Q ss_pred eEEEEEecCCCCEEEEEecCCeEEEEEecC-CCCCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCc--
Q 020107 198 VCCIASIPSDSNTLLTGSYDEYLRVWDVRS-ISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGE-- 273 (331)
Q Consensus 198 v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 273 (331)
|.+++|+| ++ +++++.|+.|++||+++ ...+.......|...|.+++|+| ++ ..+++++.++.+++|++...
T Consensus 153 v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 153 IFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCC
T ss_pred eEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCc
Confidence 99999998 55 99999999999999998 65555544567889999999999 86 67788888888899988764
Q ss_pred c--cceeEEeecCCc---------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 274 K--AEVLETYAKHGS---------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 274 ~--~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
. .+....+..|.. .|++++|+|++ ++|++++ .||.|++||+.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~-~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAG-SDGIISCWNLQTRK 284 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEE-TTSCEEEEETTTTE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCC---------CEEEEec-CCceEEEEcCccHh
Confidence 1 366777887765 99999999998 6999999 99999999998765
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-34 Score=246.30 Aligned_cols=247 Identities=12% Similarity=0.142 Sum_probs=205.4
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------c------cCccEEEEEEcCC----C---
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------I------SSSMCLCLEWNPS----A--- 117 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~------~~~~v~~~~~~~~----~--- 117 (331)
....+.+|...|++++|+|. +|++++.||.+ +|++...+ . |...|.+++|+|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp EEEESSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhhhhhhhhcCeEEEEecCC------eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 34455789999999999986 99999999999 99998876 1 6788999999999 9
Q ss_pred CeEEEEecCCeEEEEEccccce---eeeeeeecc-----cceeEEEeeC----CCCCcE-EEEEcCCCeEEEEEccC---
Q 020107 118 TSITVGLSDGSVSIVSVVESQL---EVLQQWKAH-----EFELWATSFD----VHQPHM-VYTGSDDCKFSGWDIRE--- 181 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~dg~i~i~d~~~--- 181 (331)
++|++++.||.|++||+.+++. .....+..| ...|.+++|+ | ++.. |++++.||.|++||+++
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999999999987642 114566667 5899999999 8 6788 99999999999999998
Q ss_pred ---CCcee-----eeec----ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee---c---CCce
Q 020107 182 ---SPFKL-----AFQN----SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC---L---GGGV 243 (331)
Q Consensus 182 ---~~~~~-----~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~---~~~v 243 (331)
++... .+.. ...|...|.+++|+| ++ +|++++.|+.|++||+++. +++.. +.. | ...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL-RPLYN-FESQHSMINNSNSI 236 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT-EEEEE-EECCC---CCCCCE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC-ceeEE-EeccccccccCCcc
Confidence 55544 4421 023788999999999 88 9999999999999999985 44444 455 7 8999
Q ss_pred EEEEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeec-------------CCcceeeeeecCCCCcccccccCc
Q 020107 244 WRIKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAK-------------HGSLAYGADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~ 307 (331)
.+++|+|++ ..+++++.+ +.+++|++.. ++.+..+.+ |...|.+++|+|++ +
T Consensus 237 ~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~ 304 (397)
T 1sq9_A 237 RSVKFSPQG-SLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG---------E 304 (397)
T ss_dssp EEEEECSST-TEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSS---------S
T ss_pred ceEEECCCC-CEEEEEecCCCCceEEEEECCC--CcccceeccCcccccccccccccCCcEEEEEECCCC---------C
Confidence 999999996 677777777 7889999876 577888888 99999999999998 6
Q ss_pred EEEEeecCCCeEEEEcCCCcc
Q 020107 308 LVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+|++++ .|+.|++||+.++.
T Consensus 305 ~l~~~~-~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 305 TLCSAG-WDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEEE-TTSEEEEEETTTTE
T ss_pred EEEEEe-CCCeEEEEEcCCCc
Confidence 999999 99999999998764
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-34 Score=248.40 Aligned_cols=249 Identities=15% Similarity=0.154 Sum_probs=191.8
Q ss_pred eEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc--------ccCccEEEEEEcC-CCCeEEEEecCCeEE
Q 020107 61 LYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK--------ISSSMCLCLEWNP-SATSITVGLSDGSVS 130 (331)
Q Consensus 61 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 130 (331)
...+|...|++|+|+|.+ ..+||+|+.||.| +|++.+.+ .|...|.+++|+| ++++|++|+.||+|+
T Consensus 114 ~~~~~~~~V~~l~~~P~~---~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTH---PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EEEECSSCEEEEEECSSC---TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cCCCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 346788899999999964 5699999999999 99987653 2688999999998 678999999999999
Q ss_pred EEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 131 IVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
+||++++..........+...+.+++|+| ++.+|++|+.||.|++||++.. ....+.. |...|++++|+|....+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~---h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK-ELWNLRM---HKKKVTHVALNPCCDWF 265 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC-BCCCSBC---CSSCEEEEEECTTCSSE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc-eeEEEec---ccceEEeeeecCCCceE
Confidence 99998765433333334455678999998 8899999999999999999754 3445554 99999999999944568
Q ss_pred EEEEecCCeEEEEEecCCCCCce-eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc---
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVN-ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS--- 286 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--- 286 (331)
|++++.|+.|++||+++...... .....|...|++++|+|++ ..+++++.++.+++|++... .....+..|..
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQW--DCPLGLIPHPHRHF 342 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSS--SSEEEECCCCCCCC
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCC--ccceEEeccccccc
Confidence 99999999999999988543221 1135789999999999997 77888888999999998763 44555554432
Q ss_pred ---ceeeeeecCCCCcccccccCcEEEEee-----------cCCCeEEEEcCCCccc
Q 020107 287 ---LAYGADWQRGRSSLEGKRKNSLVATCS-----------FYDRLLRIWMPESDCL 329 (331)
Q Consensus 287 ---~v~~~~~~~~~~~~~~~~~~~~l~s~~-----------~~d~~i~iW~~~~~~~ 329 (331)
.+..+.|+|++ .++++++ ..++.|++||..++.+
T Consensus 343 ~~~~~~~~~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 343 QHLTPIKAAWHPRY---------NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp SSSCCCBCEECSSS---------SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred ccceeEEEEEcCCC---------CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 23345666665 2333332 1446899999988753
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-33 Score=245.64 Aligned_cols=270 Identities=13% Similarity=0.184 Sum_probs=218.3
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.+.+++|+|.+ +|++|+ .||.|++||+.+.. ....+.+|...|.+++|++... +.+|++
T Consensus 161 h~~~V~~l~~~~~~----~l~s~s----------~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~--~~~l~s 222 (464)
T 3v7d_B 161 HDGGVWALKYAHGG----ILVSGS----------TDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKN--IKYIVT 222 (464)
T ss_dssp CSSCEEEEEECSTT----EEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEESSS--CEEEEE
T ss_pred CCcCEEEEEEcCCC----EEEEEe----------CCCCEEEEECCCCc--EEEEECCCCCccEEEEEecCCC--CCEEEE
Confidence 34567777776643 888888 79999999999875 4445578999999999995311 689999
Q ss_pred EcCCccE-EEecCCCcc-----------------------------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 88 ADADGGL-LRDITGEKI-----------------------------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
++.||.+ +|++.+... |...+.++ +++++.+++|+.||.|++||+.++
T Consensus 223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999 999876542 34445555 567899999999999999999987
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
+ .+..+.+|...|.+++|+| +++.+++++.||.|++||+++++....+.. |...|.++.|+ +.+|++++.|
T Consensus 301 ~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~---~~~l~s~s~d 371 (464)
T 3v7d_B 301 K--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLS---DKFLVSAAAD 371 (464)
T ss_dssp E--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEC---SSEEEEEETT
T ss_pred c--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEc---CCEEEEEeCC
Confidence 4 4778889999999999998 889999999999999999999887777766 99999999996 4799999999
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEE-eecCCcceeeeeecCC
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLET-YAKHGSLAYGADWQRG 296 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 296 (331)
|.|++||+++.. .... ..+...+..++|+|++ .++++++++.+++|++.. ++.+.. +.+|...|++++|+..
T Consensus 372 g~v~vwd~~~~~-~~~~--~~~~~~~~~~~~~~~~--~~l~~~~dg~i~iwd~~~--g~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 372 GSIRGWDANDYS-RKFS--YHHTNLSAITTFYVSD--NILVSGSENQFNIYNLRS--GKLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp SEEEEEETTTCC-EEEE--EECTTCCCEEEEEECS--SEEEEEETTEEEEEETTT--CCEEESCTTTTCSEEEEEEEETT
T ss_pred CcEEEEECCCCc-eeee--ecCCCCccEEEEEeCC--CEEEEecCCeEEEEECCC--CcEEehhhccCCCcEEEEEecCC
Confidence 999999999853 3333 4677788899999985 455556689999999887 466664 5678999999999843
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.++++++ .||.+.+|-+
T Consensus 445 ----------~l~~~~~-~~g~~~i~~l 461 (464)
T 3v7d_B 445 ----------TLVAAVE-KDGQSFLEIL 461 (464)
T ss_dssp ----------EEEEEEE-ETTEEEEEEE
T ss_pred ----------EEEEEEE-eCCeEEEEEe
Confidence 5777777 7887766643
No 98
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-33 Score=242.44 Aligned_cols=248 Identities=19% Similarity=0.283 Sum_probs=202.0
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc--------ccceEEeEeeecCcEeEEEEcCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE--------EKNLELLYRMDTAGIFDIKWSPV 77 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~ 77 (331)
+.+.+.+.+++|+|.++ .+||+|+ .+|.|++|++... .......+.+|...|.+++|+|+
T Consensus 125 ~~h~~~v~~l~~~p~~~--~~lat~~----------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 192 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNA--CVIATKT----------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN 192 (430)
T ss_dssp EEESSCCSEEEEETTEE--EEEEEEC----------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred EcCCCcEEEEEECCCCC--cEEEEEC----------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC
Confidence 45677899999999743 7999998 7999999999862 11233344789999999999999
Q ss_pred CCCCCC-eEEEEcCCccE-EEecCCCc-------------ccCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccc-ee
Q 020107 78 GGNAGP-FLAQADADGGL-LRDITGEK-------------ISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQ-LE 140 (331)
Q Consensus 78 ~~~~~~-~l~~~~~dg~i-iw~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~ 140 (331)
+. +|++++.||.+ +|++.... .|...|.+++|+| ++..|++++.||.|++||++++. ..
T Consensus 193 ----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 193 ----LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp ----STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred ----CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence 66 99999999999 99998721 2677899999999 67788999999999999999752 23
Q ss_pred eeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
++..+..|...|++++|+|....++++|+.||.|++||+++. .....+.. |...|.+++|+|....+|++++.|+.
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 466677899999999999965568999999999999999984 44555655 99999999999933367999999999
Q ss_pred EEEEEecCCCC------------CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 220 LRVWDVRSISK------------PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 220 i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
|++||++.... .+......|...|++++|+|+++.++++++.++.+++|++..
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999987332 222334578889999999999855788888888899999865
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=251.49 Aligned_cols=256 Identities=12% Similarity=0.117 Sum_probs=198.3
Q ss_pred EeccCcccceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCC---Cc--------ccCccEEEEEEcC
Q 020107 49 FNVNAEEKNLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITG---EK--------ISSSMCLCLEWNP 115 (331)
Q Consensus 49 w~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~---~~--------~~~~~v~~~~~~~ 115 (331)
|+.... .+..+..+|.+.|++++|+| + +++|++|+.||.+ +|++.+ .. .|...|.+++|+|
T Consensus 48 w~~~g~--~~~~~~~~h~~~V~~~~~s~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 121 (437)
T 3gre_A 48 GNLRGK--LIATLMENEPNSITSSAVSPGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP 121 (437)
T ss_dssp GGCCCC--EEEEECTTTTSCEEEEEEECSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT
T ss_pred ccccce--EEeeeccCCCCceEEEEECCCC----CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC
Confidence 764443 35555578999999999999 8 8899999999999 999876 22 2678999999999
Q ss_pred CCCeEEEEecCCeEEEEEcc---ccceeeeeeeec------------ccceeEEEe--eCCCCCcEEEEEcCCCeEEEEE
Q 020107 116 SATSITVGLSDGSVSIVSVV---ESQLEVLQQWKA------------HEFELWATS--FDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d 178 (331)
+++.|++++.||.|++||++ .++. ...+.. +...+.++. ++| ++.++++++.|+.|++||
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence 99999999999999999995 3332 222221 334455555 445 678999999999999999
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC--CC-e
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI--PG-L 255 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~-~ 255 (331)
+++++....+.. ..|...|++++|+| ++.+|++|+.||.|++||+++. +++..+...|..+|.+++|+|.. ++ .
T Consensus 199 ~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 199 IRTLERLQIIEN-SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp TTTCCEEEEEEC-CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred CCCCeeeEEEcc-CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccE
Confidence 999887777765 23788999999999 8999999999999999999984 55555334778899999777641 14 5
Q ss_pred EEEEEecCcEEEEEEcCcccceeEEeec--------------------------CCcceeeeeecCCCCcccccccCcEE
Q 020107 256 VLAACMHNGFAVVKVGGEKAEVLETYAK--------------------------HGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
+++++.++.+++|++.. ++.+..+.+ |...|++++|+ ++ ++|
T Consensus 276 l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l 343 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVK--GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KIL 343 (437)
T ss_dssp EEEESTTEEEEEEETTT--TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEE
T ss_pred EEEEcCCCcEEEEEcCC--CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEE
Confidence 55555666689999876 455666654 44556666777 43 699
Q ss_pred EEeecCCCeEEEEcCCCccc
Q 020107 310 ATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~~~~~~ 329 (331)
++++ .|+.|++||+.++..
T Consensus 344 ~s~~-~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 344 LTDE-ATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEG-GGTEEEEEETTCGGG
T ss_pred EecC-CCCeEEEEECCCccc
Confidence 9999 999999999988754
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-33 Score=232.95 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=198.7
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccc--eEEeEeeecCcEeEEEEcC--CCCCCCC
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN--LELLYRMDTAGIFDIKWSP--VGGNAGP 83 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~ 83 (331)
+...+.+++|+|.+ ++||+|+ .||.|++|++...... ....+.+|...|++++|+| + +.
T Consensus 10 H~~~v~~~~~~~~~---~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d----~~ 72 (351)
T 3f3f_A 10 HDDLVHDVVYDFYG---RHVATCS----------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEY----GR 72 (351)
T ss_dssp CSSCEEEEEECSSS---SEEEEEE----------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGG----CS
T ss_pred cccceeEEEEcCCC---CEEEEee----------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCC----CC
Confidence 34556777777655 8999998 7999999999875422 3344567999999999999 5 78
Q ss_pred eEEEEcCCccE-EEecCCCc---------------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeee-
Q 020107 84 FLAQADADGGL-LRDITGEK---------------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQ- 144 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~---------------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 144 (331)
+|++++.||.+ +|++...+ .|...|.+++|+|+ +++|++++.||.|++||+++++......
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence 99999999999 99998752 25788999999999 9999999999999999998764311111
Q ss_pred ----------eecccceeEEEeeCCC--CCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCC----
Q 020107 145 ----------WKAHEFELWATSFDVH--QPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDS---- 208 (331)
Q Consensus 145 ----------~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 208 (331)
...|...+.+++|+|. ++..+++++.++.+.+|+...++...... ...|...|++++|+| ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~p-~~~~~~ 230 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-LPGHKSLIRSISWAP-SIGRWY 230 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE-CCCCCSCEEEEEECC-CSSCSS
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee-cCCCCcceeEEEECC-CCCCcc
Confidence 1257788999999984 38899999999999888877765422222 345999999999999 76
Q ss_pred CEEEEEecCCeEEEEEecCCCC--------------------------------------------CceeeeeecCCceE
Q 020107 209 NTLLTGSYDEYLRVWDVRSISK--------------------------------------------PVNETSVCLGGGVW 244 (331)
Q Consensus 209 ~~l~~~~~d~~i~iwd~~~~~~--------------------------------------------~~~~~~~~~~~~v~ 244 (331)
++|++++.|+.|++||++.... .....+..|...|+
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 8999999999999999987421 11122456889999
Q ss_pred EEEECCCCCCeEEEEEecCcEEEEEEcCcc-cceeEEeec
Q 020107 245 RIKHHPFIPGLVLAACMHNGFAVVKVGGEK-AEVLETYAK 283 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 283 (331)
+++|+|++ .++++++.++.+++|++.... .+.+..+..
T Consensus 311 ~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 349 (351)
T 3f3f_A 311 SVSWNLTG-TILSSAGDDGKVRLWKATYSNEFKCMSVITA 349 (351)
T ss_dssp EEEECSSS-CCEEEEETTSCEEEEEECTTSCEEEEEEEC-
T ss_pred EEEEcCCC-CEEEEecCCCcEEEEecCcCcchhheeehcc
Confidence 99999997 678888888899999998642 334444443
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=248.22 Aligned_cols=244 Identities=17% Similarity=0.221 Sum_probs=192.0
Q ss_pred eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc-----------------ccC------------ccEEEEEE
Q 020107 64 MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK-----------------ISS------------SMCLCLEW 113 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~-----------------~~~------------~~v~~~~~ 113 (331)
.+.+.|++++|+|+ +++|++|+.||.+ +|++.+.+ .|. ..|.+++|
T Consensus 26 ~~~~~V~~v~~s~~----g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 26 AEADIISTVEFNHS----GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp CGGGSEEEEEECSS----SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred cccCcEEEEEECCC----CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence 36788999999999 9999999999999 99988654 144 77999999
Q ss_pred cCCC--CeEEEEecCCeEEEEEcccccee-------------------------------------eeee-eecccceeE
Q 020107 114 NPSA--TSITVGLSDGSVSIVSVVESQLE-------------------------------------VLQQ-WKAHEFELW 153 (331)
Q Consensus 114 ~~~~--~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------~~~~-~~~~~~~v~ 153 (331)
+|++ ..|++++.|+.|++||+.+++.. +... ..+|...|.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9998 78999999999999999864321 1112 357999999
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cceeeee----cccCCCcceEEEEEecCCC-CEEEEEecCCeEEEEEecC
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQ----NSKIHKMGVCCIASIPSDS-NTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~ 227 (331)
+++|+| ++++|+++ .|+.|++||+++. +....+. ....|...|++++|+| ++ .+|++++.|+.|++||+++
T Consensus 182 ~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 182 SISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcC
Confidence 999999 78899998 7999999999843 3232210 1234899999999999 76 9999999999999999998
Q ss_pred CCCC---ceeeeeecCC------------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc-----
Q 020107 228 ISKP---VNETSVCLGG------------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL----- 287 (331)
Q Consensus 228 ~~~~---~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----- 287 (331)
.... +.. +..|.. .|.+++|+|++ .++++++. +.+++|++... ++.+..+.+|...
T Consensus 259 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~-~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 259 SALCDRHSKL-FEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNME-NRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp CSSSCTTCEE-ECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCC-SSCSCCEESCGGGTTTHH
T ss_pred CccccceeeE-eccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCC-ccccceeecccccccccc
Confidence 6431 232 355554 89999999985 55555555 88999998763 5677778887642
Q ss_pred ----------eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 288 ----------AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 288 ----------v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+..++|+|++ ++|++++ .||.|++||+.++.
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~---------~~l~s~s-~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSD---------SVVMTGS-YNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTS---------SEEEEEC-STTEEEEEETTTCC
T ss_pred ccccccccccceEEEECCCC---------CEEEEec-cCCEEEEEEcCCCc
Confidence 2348999998 6999999 99999999998764
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-33 Score=239.74 Aligned_cols=236 Identities=16% Similarity=0.182 Sum_probs=198.8
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...+.+++|+|.+ ++|++|+ .+|.|++||+.+.+ ......+|...|.+++|++. .|+++
T Consensus 134 ~~~v~~v~~s~~~---~~l~~~~----------~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~------~l~~~ 192 (401)
T 4aez_A 134 STYVASVKWSHDG---SFLSVGL----------GNGLVDIYDVESQT--KLRTMAGHQARVGCLSWNRH------VLSSG 192 (401)
T ss_dssp TCCEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTCC--EEEEECCCSSCEEEEEEETT------EEEEE
T ss_pred CCCEEEEEECCCC---CEEEEEC----------CCCeEEEEECcCCe--EEEEecCCCCceEEEEECCC------EEEEE
Confidence 5678899999866 8999998 79999999998875 33444689999999999554 99999
Q ss_pred cCCccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC
Q 020107 89 DADGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (331)
+.||.+ +|++.... .|...|.+++|+|+++.|++|+.||.|++||+++++. +..+..|...|.+++|+|.
T Consensus 193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPW 270 (401)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTT
T ss_pred cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCC
Confidence 999999 99998432 2688999999999999999999999999999998654 6677889999999999996
Q ss_pred CCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE--EecCCeEEEEEecCCCCCceeee
Q 020107 161 QPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT--GSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 161 ~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+..++++++ .|+.|++||+++++....+. +...|.+++|+| ++.++++ |+.|+.|++||+++........+
T Consensus 271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~ 345 (401)
T 4aez_A 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345 (401)
T ss_dssp STTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence 677888866 79999999999988776665 577899999999 8999988 44899999999998533233224
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
..|...|.+++|+|++ ..+++++.++.+++|++...
T Consensus 346 ~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 346 PAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC-
T ss_pred cCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCC
Confidence 6899999999999997 67777888888999999874
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=230.45 Aligned_cols=241 Identities=20% Similarity=0.251 Sum_probs=204.1
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
+...+.+|...|++++| |+ +.+|++++.||.+ +|++.+... |...|.+++|+|+++.|++++.||.|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VD----DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EE----TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHhhCCCCCcEEEEe-cC----CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 44556889999999999 88 8899999999999 999987653 688999999999999999999999999
Q ss_pred EEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 131 IVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 131 i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
+|++.... ...+..+..|...|.+++|+ ++++++++.|+.|++|| .++....+.. |...+.++.|.|.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~---~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQA---HNASVWDAKVVSFSEN 156 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEEC---CSSCEEEEEEEETTTT
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEeccc---CCCceeEEEEccCCCC
Confidence 99987642 23466778899999999994 47899999999999999 4444555555 9999999999987889
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY 289 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 289 (331)
++++++.|+.|++||.. .........|...+.+++|+|++ .+++++.++.+++|++.. ++.+..+.+|...|+
T Consensus 157 ~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 157 KFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHT--GDVLRTYEGHESFVY 229 (313)
T ss_dssp EEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETT--EEEEEETTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred EEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCC--eEEEccCCCeEEEEECCc--hhhhhhhhcCCceEE
Confidence 99999999999999943 33444223489999999999995 488888888999999876 578888999999999
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+++|+|++ .|++++ .||.|++||+.++..
T Consensus 230 ~~~~~~~~----------~l~~~~-~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 230 CIKLLPNG----------DIVSCG-EDRTVRIWSKENGSL 258 (313)
T ss_dssp EEEECTTS----------CEEEEE-TTSEEEEECTTTCCE
T ss_pred EEEEecCC----------CEEEEe-cCCEEEEEECCCCce
Confidence 99999997 588888 899999999988753
No 104
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=230.77 Aligned_cols=246 Identities=11% Similarity=0.112 Sum_probs=206.1
Q ss_pred EEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 59 ELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
...+.+|...|++++|+|+ +++|++++.||.+ +|++.+.+. |...|.+++|+|++++|++++.||.|++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKE----GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEECCSSCEEEEEECTT----SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cEEEEEeeceEEEEEEcCC----CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3445789999999999999 8999999999999 999987654 6889999999999999999999999999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCCCceeeeec--------ccCCCc--
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRESPFKLAFQN--------SKIHKM-- 196 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~--------~~~~~~-- 196 (331)
||+.+++. +..+. +...+.+++|+| ++.++++++.+ +.|++||++.......+.. ...|..
T Consensus 101 wd~~~~~~--~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 101 WDVSNGQC--VATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EETTTCCE--EEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EECCCCcE--EEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 99998754 55555 788999999999 78899999988 9999999987654222211 112444
Q ss_pred ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107 197 GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE 276 (331)
Q Consensus 197 ~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
.+.+++|+| ++++|++++.|+.|++||+++...++.. +..|...|.+++|+|++ ..+++++.++.+++|++.. ++
T Consensus 177 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~--~~ 251 (369)
T 3zwl_B 177 AATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDS-IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVST--LQ 251 (369)
T ss_dssp CEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEE-EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT--CC
T ss_pred ceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEE-EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCC--Cc
Confidence 899999999 9999999999999999999984344443 57799999999999986 6777777888899999876 46
Q ss_pred eeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCC--------------eEEEEcCCCcc
Q 020107 277 VLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDR--------------LLRIWMPESDC 328 (331)
Q Consensus 277 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~--------------~i~iW~~~~~~ 328 (331)
.+..+. +...+..++|+|++ +++++++ .++ .+++||+.++.
T Consensus 252 ~~~~~~-~~~~~~~~~~~~~~---------~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 252 VLKKYE-TDCPLNTAVITPLK---------EFIILGG-GQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEEEEE-CSSCEEEEEECSSS---------SEEEEEE-CCC-------------CEEEEEETTTCC
T ss_pred eeeeec-CCCCceeEEecCCC---------ceEEEee-cCCCceEEEEecCCCcceeEEEecCCCc
Confidence 666666 67889999999999 6888888 787 89999987764
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.9e-34 Score=243.42 Aligned_cols=293 Identities=13% Similarity=0.084 Sum_probs=204.8
Q ss_pred eeeeecCcceeEeeecCCCCC-cEEEEEeecccCCCCCCCCCcEEEEeccCccc------ceEEeE-eeecCcEeEEEEc
Q 020107 4 AHCELDGNADAVEFCPQDSYH-HVLAASTYTLQEGDKPSRNGSISLFNVNAEEK------NLELLY-RMDTAGIFDIKWS 75 (331)
Q Consensus 4 ~~~~~~~~~~~v~~~~~~~~~-~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~------~~~~~~-~~~~~~v~~~~~~ 75 (331)
..+.++..+.++.|+...+.. +++++|. ++.|.+|+...... ...... ..+...+..+.|+
T Consensus 10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (393)
T 4gq1_A 10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGH-----------DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFS 78 (393)
T ss_dssp EECCTTCCEEEEEECTTSGGGTTEEEEEE-----------SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEEC
T ss_pred eEecCCCCCeEEEEeCCCCCCCCEEEEEC-----------CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeec
Confidence 456678889999998766544 5777776 88999998754321 111111 1234456666665
Q ss_pred CCCC----------------CCCCeEEEEcCCccE-EEecCCCc-----------ccCccEEEEEEcC--------CCCe
Q 020107 76 PVGG----------------NAGPFLAQADADGGL-LRDITGEK-----------ISSSMCLCLEWNP--------SATS 119 (331)
Q Consensus 76 ~~~~----------------~~~~~l~~~~~dg~i-iw~~~~~~-----------~~~~~v~~~~~~~--------~~~~ 119 (331)
+... ..+.+|++++.|+++ +|+....+ .|...|.+++|+| ++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 79 SSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp TTCEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred CCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 4210 004579999999999 99987653 3788999999998 7889
Q ss_pred EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee----------
Q 020107 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ---------- 189 (331)
Q Consensus 120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 189 (331)
|++|+.|++|++||++++.. +..+..|...+.+++|+|.+.++|++++.|+.|++||+++++......
T Consensus 159 las~s~D~tv~~Wd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGP--ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEETTSEEEEEEEETTEE--EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred EEEEECCCeEEEEECCCCce--eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 99999999999999987643 556667888999999999656789999999999999999875432211
Q ss_pred ------------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce--------------
Q 020107 190 ------------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV-------------- 243 (331)
Q Consensus 190 ------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v-------------- 243 (331)
...+|...+.++.|.+.++..|++++.|+++++||+..... ... +..|...+
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~-l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNE-ISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECS
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-Cce-EeeecCccccEEEccccccccc
Confidence 01247788999999844999999999999999999987432 111 12333222
Q ss_pred ----EEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCe
Q 020107 244 ----WRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRL 318 (331)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~ 318 (331)
....|+|...+.++++++ ++.+++|++.. ++....+.+|...|.+++|+|++ ++||+++ .| .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG---------~~LA~as-~~-G 381 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDG---------SHLAIAT-EG-S 381 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTS---------SEEEEEE-SS-E
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCC---------CEEEEEe-CC-C
Confidence 233455544466666665 66788888776 46667777889999999999999 7999998 55 5
Q ss_pred EEEEcC
Q 020107 319 LRIWMP 324 (331)
Q Consensus 319 i~iW~~ 324 (331)
+.+|++
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666654
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-34 Score=259.80 Aligned_cols=248 Identities=18% Similarity=0.194 Sum_probs=201.4
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
+.+.+.+++|+|.+ ++|++|+ .||.|++|++............+|...|++++|+|+.. +.+|++
T Consensus 8 H~~~V~~l~~s~dg---~~latg~----------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~~~l~s 72 (753)
T 3jro_A 8 HNELIHDAVLDYYG---KRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF--GTILAS 72 (753)
T ss_dssp CCCCEEEECCCSSS---CCEEEEE----------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS--CSEEEE
T ss_pred CcceeEEEEECCCC---CeEEEEE----------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC--CCEEEE
Confidence 34456666666654 8999998 79999999998544345555678999999999997622 569999
Q ss_pred EcCCccE-EEecCCCc--------ccCccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 88 ADADGGL-LRDITGEK--------ISSSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 88 ~~~dg~i-iw~~~~~~--------~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
|+.||.+ +|++.+.+ .|...|.+++|+|+ ++.+++|+.||.|++||++++.......+.+|...|.+++
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 9999999 99998864 26789999999999 9999999999999999999875545667788999999999
Q ss_pred eCCC------------CCcEEEEEcCCCeEEEEEccCCCcee-eeecccCCCcceEEEEEecCC---CCEEEEEecCCeE
Q 020107 157 FDVH------------QPHMVYTGSDDCKFSGWDIRESPFKL-AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYL 220 (331)
Q Consensus 157 ~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i 220 (331)
|+|. ++..+++|+.||.|++||++++.... ......+|...|++++|+| + +.+|++++.||.|
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP-TVLLRSYLASVSQDRTC 231 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC-CCSSSEEEEEEESSSCE
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc-CCCCCCEEEEEecCCEE
Confidence 9984 47899999999999999999875421 2222244999999999999 7 8999999999999
Q ss_pred EEEEecCCCCCce---eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 221 RVWDVRSISKPVN---ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 221 ~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
++||+++...+.. .....|...|++++|+|++ ..+++++.++.+++|++..
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCS
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCC
Confidence 9999998532211 1124588899999999997 6777888888999999873
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1e-31 Score=225.43 Aligned_cols=271 Identities=12% Similarity=0.050 Sum_probs=199.7
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-E
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-A 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~ 86 (331)
....+.+|+|+|++ ++||+|+ +..+++|++.... .....+...+..+++.++ ...+ +
T Consensus 18 h~~~V~~v~fs~dg---~~la~g~-----------~~~~~iw~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~ 75 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQ---SCLILST-----------LKSFEIYNVHPVA----HIMSQEMRHLSKVRMLHR----TNYVAF 75 (355)
T ss_dssp -CCCCCEEEECTTS---SEEEEEC-----------SSEEEEEEETTEE----EEEEEECSCCCEEEECTT----SSEEEE
T ss_pred CCCceEEEEECCCC---CEEEEEc-----------CCEEEEEecCCcc----eeeeeecCCeEEEEEcCC----CCEEEE
Confidence 45678889998877 8999997 4568999988654 222334446888899988 5666 5
Q ss_pred EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEeeCC
Q 020107 87 QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 87 ~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
+++.|+.+ +|++.+++. +...|.+++|+++. ++++ .++.|++||+.++ +. +..+.. +...+++++
T Consensus 76 ~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~--~~~~~~---~~~~~~~s~ 147 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR--ITDDIR---FGGVCEFSN 147 (355)
T ss_dssp ECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB--SSCCEE---EEEEEEEET
T ss_pred EECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee--eEEecc---CCceEEEEc
Confidence 67788888 999987654 46789999998753 4443 4789999999876 32 444443 344556665
Q ss_pred CCCcEEEE--EcCCCeEEEEEccCCC----------------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe-E
Q 020107 160 HQPHMVYT--GSDDCKFSGWDIRESP----------------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY-L 220 (331)
Q Consensus 160 ~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i 220 (331)
.+++. |+.+|.|++||++++. ....+. +|...|++++|+| ++.+|++++.|++ |
T Consensus 148 ---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~-~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 148 ---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNR-KSDMVATCSQDGTII 220 (355)
T ss_dssp ---TEEEEEESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECT-TSSEEEEEETTCSEE
T ss_pred ---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECC-CCCEEEEEeCCCCEE
Confidence 44554 6899999999999764 133344 4999999999999 9999999999998 9
Q ss_pred EEEEecCCCCCceeeeee-cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-----------------
Q 020107 221 RVWDVRSISKPVNETSVC-LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA----------------- 282 (331)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 282 (331)
++||++++ +++..+..+ |...|++++|+|++ ..+++++.++.+++|++..........+.
T Consensus 221 ~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 221 RVFKTEDG-VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEETTTC-CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEECCCC-cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99999985 555552224 99999999999997 67778888889999999764322222211
Q ss_pred ----cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 283 ----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 283 ----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+......++|++++ ++|++++ .||.+++|++..+
T Consensus 299 ~~~~~~~~~~~~~a~~~d~---------~~l~~~~-~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISES---------SLVVVWP-HTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCTTCCCCEEEESSSS---------EEEEEET-TTTEEEEEEEEEE
T ss_pred EeccCCCCCceEEEEeCCC---------CEEEEEe-CCCeEEEEEEEcC
Confidence 112234678999998 7999999 8999999998654
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1e-31 Score=230.73 Aligned_cols=234 Identities=18% Similarity=0.263 Sum_probs=196.6
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.+|+|+|.+ ++||+|+ .||.|+|||+.+.+ ......+|...+.++.|++. +|++|+.
T Consensus 149 ~V~sv~fspdg---~~lasgs----------~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~~~------~l~sgs~ 207 (420)
T 4gga_A 149 YISSVAWIKEG---NYLAVGT----------SSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNSY------ILSSGSR 207 (420)
T ss_dssp CEEEEEECTTS---SEEEEEE----------TTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETT------EEEEEET
T ss_pred cEEEEEECCCC---CEEEEEE----------CCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeCCC------EEEEEeC
Confidence 47888888876 8999999 79999999999876 44445789999999988765 9999999
Q ss_pred CccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEEEeeCCC
Q 020107 91 DGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 91 dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 160 (331)
|+.+ +|+..... .|...+..+.|+|+++.+++++.|+.+++|+...++. ..+.....|...|.+++|+|.
T Consensus 208 d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287 (420)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred CCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence 9999 99877643 3678899999999999999999999999999987542 234566778999999999997
Q ss_pred CCcEEEEE--cCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeee
Q 020107 161 QPHMVYTG--SDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 161 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+..+++++ +.|+.|++||+++++....+.. ...+.++.|+| ++..+++++ .|+.|++||++++ +++.. +
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~-l 360 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDA----HSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM-AKVAE-L 360 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTTTEEEEEEEC----SSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC-CEEEE-E
T ss_pred cccEEEEEeecCCCEEEEEeCCccccceeecc----ccceeeeeecC-CCCeEEEEEecCCCEEEEEECCCC-cEEEE-E
Confidence 77777764 5799999999999987766664 56789999999 777777654 7999999999986 45554 5
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.+|.+.|++++|+|++ ..+++++.|+.+++|++.+.
T Consensus 361 ~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 361 KGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCS
T ss_pred cCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Confidence 7899999999999997 67888888889999999874
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-32 Score=234.60 Aligned_cols=242 Identities=15% Similarity=0.133 Sum_probs=192.7
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC----------cccCccEEEEEEcC-CCCeEEEEecCCeEEEEEcc
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE----------KISSSMCLCLEWNP-SATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~----------~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 135 (331)
....++++|+. ..++++++.||.+ +|++... ..|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 36 ~~~~~~~~~~~---~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKF---MALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSE---EEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCe---EEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 34568889882 2244457889999 9998542 12788999999999 89999999999999999998
Q ss_pred ccce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE
Q 020107 136 ESQL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 136 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
++.. .++..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++....+.. ..|...|.+++|+| ++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSR-DGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTCCSCEEEEEECT-TSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCCCCceEEEEECC-CCCE
Confidence 8643 346778899999999999994457999999999999999999877766621 23899999999999 9999
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCc-eEEEEECCCCCCeEEEEE----ecCcEEEEEEcCcccceeEEe-ecC
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGG-VWRIKHHPFIPGLVLAAC----MHNGFAVVKVGGEKAEVLETY-AKH 284 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~h 284 (331)
|++++.|+.|++||+++. +.+......|.+. +.++.|+|+ +.+++++ .++.+++|++..... .+... ..|
T Consensus 191 l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~~d~~i~iwd~~~~~~-~~~~~~~~~ 266 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSE--GKILTTGFSRMSERQVALWDTKHLEE-PLSLQELDT 266 (402)
T ss_dssp EEEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECST--TEEEEEEECTTCCEEEEEEETTBCSS-CSEEEECCC
T ss_pred EEEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCC--CcEEEEeccCCCCceEEEEcCccccC-CceEEeccC
Confidence 999999999999999985 4555422567665 899999998 4455554 678888999877522 23333 357
Q ss_pred CcceeeeeecCCCCcccccccCcEEE-EeecCCCeEEEEcCCCcc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVA-TCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~~d~~i~iW~~~~~~ 328 (331)
...+..++|+|++ ++|+ +++ .|+.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~---------~~l~~~g~-~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDT---------NIVYLCGK-GDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTT---------TEEEEEET-TCSCEEEEEECSST
T ss_pred CCceeEEEEcCCC---------CEEEEEEc-CCCeEEEEEecCCC
Confidence 7889999999998 4665 565 79999999998765
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-32 Score=225.03 Aligned_cols=258 Identities=9% Similarity=-0.004 Sum_probs=191.6
Q ss_pred CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC--
Q 020107 23 YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT-- 99 (331)
Q Consensus 23 ~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~-- 99 (331)
++.+|++|+ .||.|++||+.+++ .+..+. ...|.++.|+|. +++++.|+.+ +|+..
T Consensus 47 d~~~l~sg~----------~Dg~v~iwd~~~~~-~~~~~~---~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~ 105 (343)
T 3lrv_A 47 DKWVCMCRC----------EDGALHFTQLKDSK-TITTIT---TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQ 105 (343)
T ss_dssp EEEEEEEEE----------ETTEEEEEEESSSS-CEEEEE---EECCCTTCCCCS-------EEEECSTTEEEEEETTTE
T ss_pred CCCEEEEEC----------CCCcEEEEECCCCc-EEEEEe---cCCceeeeeCCc-------eEEecCCCeEEEEEccCc
Confidence 447899998 79999999999876 333332 456888888765 8999999999 77554
Q ss_pred -------CCc-------ccCccEEEEEEcC--CCCeEEEEecCCeEEEEEccccceeeeeee-ecccceeEEEeeCCCCC
Q 020107 100 -------GEK-------ISSSMCLCLEWNP--SATSITVGLSDGSVSIVSVVESQLEVLQQW-KAHEFELWATSFDVHQP 162 (331)
Q Consensus 100 -------~~~-------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 162 (331)
+.+ .|...|.+++|+| +++++++++.||.|++||+++++. +... ..+...+++++|+| ++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~p-dg 182 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHK-DS 182 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECT-TS
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECC-CC
Confidence 333 1347799999999 999999999999999999998765 3333 33556799999999 88
Q ss_pred cEEEEEcCCCeEEEEEccCCCce-eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee-eeeecC
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFK-LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE-TSVCLG 240 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 240 (331)
.+|++|+.||.|++||+++++.. ..+.. .|...|++++|+| ++.+|++++ |+.|++||+++.+..... .+..|.
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE 258 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred CEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence 99999999999999999998765 34432 3899999999999 999999999 559999999986432211 011133
Q ss_pred Cce--EEEEECCCCCCeEEEEEe-cCcEEEEEEcCcccceeEEeecCCcceeeeeecC---CCCcccccccCcEEEEeec
Q 020107 241 GGV--WRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR---GRSSLEGKRKNSLVATCSF 314 (331)
Q Consensus 241 ~~v--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~ 314 (331)
..+ .+++|+|++ .++++++. ++.+++|++.... +... . .++..+.|.+ +. ..+++++
T Consensus 259 ~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~-~~~~-~----~~~~~~~~~~~~~~~---------~~l~~~~- 321 (343)
T 3lrv_A 259 FKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT-KNWT-K----DEESALCLQSDTADF---------TDMDVVC- 321 (343)
T ss_dssp ---CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT-CSEE-E----EEEEECCC----CCC---------CEEEEEE-
T ss_pred ccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc-cceE-e----cCceeEecCcccccc---------ceeEEEe-
Confidence 334 369999997 56666666 8889999986642 2111 1 5677888888 55 5788888
Q ss_pred CCCeEEEEcCC
Q 020107 315 YDRLLRIWMPE 325 (331)
Q Consensus 315 ~d~~i~iW~~~ 325 (331)
.|+.+.++-..
T Consensus 322 ~d~~~~~~~~~ 332 (343)
T 3lrv_A 322 GDGGIAAILKT 332 (343)
T ss_dssp ETTEEEEEEEC
T ss_pred cCCceEEEEec
Confidence 79999887543
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-32 Score=230.49 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=181.3
Q ss_pred cEEEEEeecccCC-CCCCCCCcEEEEeccCcccceEEeEe-------eecCcEeEEEEcCCCCCCCCeEEEE--cCCccE
Q 020107 25 HVLAASTYTLQEG-DKPSRNGSISLFNVNAEEKNLELLYR-------MDTAGIFDIKWSPVGGNAGPFLAQA--DADGGL 94 (331)
Q Consensus 25 ~~la~g~~~~~~~-~~~~~~g~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~l~~~--~~dg~i 94 (331)
+.+++|....... -.+..|+.+++|++......+..... .+...+.+++|+|+ +++|+++ +.|+.+
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD----g~~la~as~~~d~~i 159 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE----GTVAAIASSKVPAIM 159 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT----SSCEEEEESCSSCEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC----CCEEEEEECCCCCEE
Confidence 6777765211000 11235889999998876533332211 12345889999999 8887654 468999
Q ss_pred -EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE
Q 020107 95 -LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG 168 (331)
Q Consensus 95 -iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 168 (331)
+|++.+.+. |...|.+++|+|+++++++++.+ .+++|+..+++.........|...|.+++|+| ++..++++
T Consensus 160 ~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~ 237 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAA 237 (365)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEE
T ss_pred EEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEE
Confidence 999988654 56789999999999999999865 56667666665444455667889999999999 88899998
Q ss_pred cCCC----eEEEEEccCCCceee-eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCce
Q 020107 169 SDDC----KFSGWDIRESPFKLA-FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGV 243 (331)
Q Consensus 169 ~~dg----~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 243 (331)
+.|+ .+++||+........ ......|...|++++|+| ++++||+|+.|++|+|||++++ +++..+..+|..+|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~-~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDL-SMSKIFKQAHSFAI 315 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-EEEEEETTSSSSCE
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCC-cEEEEecCcccCCE
Confidence 8777 688999887653211 111234899999999999 9999999999999999999985 56665456899999
Q ss_pred EEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
++++|+|++ .+|++++.|+.+++|++...
T Consensus 316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDS-TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTS-CEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Confidence 999999997 77888888999999999653
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.5e-32 Score=226.42 Aligned_cols=250 Identities=14% Similarity=0.132 Sum_probs=201.0
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc-------cCccEEEEEEcCCCCeEEEEecCCe
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI-------SSSMCLCLEWNPSATSITVGLSDGS 128 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~ 128 (331)
......+|...|++++|+|+..+ +++|++|+.||.+ +|++.+ ... |...|.+++|+|++++|++++.||.
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLP-GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSS-SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEeccCCCCceEEEEEcCCCCC-ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 33455789999999999999211 2799999999999 999986 222 6889999999999999999999999
Q ss_pred EEEEEccccceeeeeeeecccceeEEEee--CCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 129 VSIVSVVESQLEVLQQWKAHEFELWATSF--DVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 129 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
|++||+++++. + .+..|...|.+++| +| ++.+|++++.|+.|++||+++++....+.. ...+.++.+.+
T Consensus 110 v~iwd~~~~~~--~-~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~- 180 (368)
T 3mmy_A 110 AKMWDLSSNQA--I-QIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQL----PERCYCADVIY- 180 (368)
T ss_dssp EEEEETTTTEE--E-EEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEEC----SSCEEEEEEET-
T ss_pred EEEEEcCCCCc--e-eeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEec----CCCceEEEecC-
Confidence 99999998754 3 35669999999999 77 778999999999999999999987777775 34677777764
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC---CeEEEEEecCcEEEEEEcCccc-ceeEEee
Q 020107 207 DSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP---GLVLAACMHNGFAVVKVGGEKA-EVLETYA 282 (331)
Q Consensus 207 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 282 (331)
..+++++.++.+++||++............+...+..+.+.++.. ..+++++.++.+++|++..... ..+..+.
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 588889999999999999865444443334455666666655431 1277778888899999987543 6677888
Q ss_pred cCCc------------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 283 KHGS------------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 283 ~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+|.. .|++++|+|++ ++|++++ .||.|++||+.++..
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~-~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVH---------GTLATVG-SDGRFSFWDKDARTK 307 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTT---------CCEEEEE-TTSCEEEEETTTTEE
T ss_pred eeecccccccccccccceEEEEEecCC---------CEEEEEc-cCCeEEEEECCCCcE
Confidence 8876 79999999998 6999999 999999999987643
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=231.52 Aligned_cols=262 Identities=16% Similarity=0.184 Sum_probs=203.4
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCcc-----------------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEKI----------------- 103 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~~----------------- 103 (331)
++.+++|+++... ......+|.+.|++++|+| + +++|++++.||.+ +|++.+...
T Consensus 22 ~~~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNK--DRDVERIHGGGINTLDIEPVE----GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECT--TEEECCCCSSCEEEEEECTTT----CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCc--ceeeeeccCCcEEEEEEecCC----CCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence 5668888887765 4556678999999999999 8 8899999999999 999986532
Q ss_pred --cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC--CcEEEEEcCCCeEEEEE
Q 020107 104 --SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ--PHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 104 --~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~i~d 178 (331)
|...|.+++|+| ++.+|++++.||.|++||+.+++. ...+. +...+.++.|+|.. +.++++++.++.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 778899999999 777999999999999999998754 44444 67789999999843 34899999999999999
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEecCCCCCceee--------------eeecCCce
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVRSISKPVNET--------------SVCLGGGV 243 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~~~v 243 (331)
+++++....+.. |...|.+++|+| ++. +|++++.||.|++||++....++... ...|...|
T Consensus 173 ~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 173 LKSGSCSHILQG---HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SSSSCCCEEECC---CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred CCCcceeeeecC---CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 999887777766 999999999999 666 69999999999999998764343331 14688899
Q ss_pred EEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC--Cc--ceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 244 WRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH--GS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
.+++|+|++ ..+++++.++.+++|++... +....+..+ .. ....+.+..... ..+++++ .|+.|
T Consensus 249 ~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~i 316 (408)
T 4a11_B 249 NGLCFTSDG-LHLLTVGTDNRMRLWNSSNG--ENTLVNYGKVCNNSKKGLKFTVSCGCS--------SEFVFVP-YGSTI 316 (408)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEEETTTC--CBCCCCCCCCCCCCSSCCCCEECCSSS--------SCEEEEE-ETTEE
T ss_pred eEEEEcCCC-CEEEEecCCCeEEEEECCCC--ccceeccccccccccccceeEEecCCC--------ceEEEEe-cCCEE
Confidence 999999986 67888888899999999874 222222211 11 111122222211 4566666 79999
Q ss_pred EEEcCCCccc
Q 020107 320 RIWMPESDCL 329 (331)
Q Consensus 320 ~iW~~~~~~~ 329 (331)
++||+.++..
T Consensus 317 ~v~d~~~~~~ 326 (408)
T 4a11_B 317 AVYTVYSGEQ 326 (408)
T ss_dssp EEEETTTCCE
T ss_pred EEEECcCCcc
Confidence 9999987653
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.9e-31 Score=213.45 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=179.0
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcc-cceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE--EEecCCC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEE-KNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL--LRDITGE 101 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--iw~~~~~ 101 (331)
..+++++ ...|++|+..... ........+|..+|..+.+.|+. ..++.++-.+-.+ ++.+.-.
T Consensus 55 ~~~~~~~-----------~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 55 PCIITAC-----------EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDV---YNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEE-----------SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTC---CSCEEEEECSSSEEEEEEECC-
T ss_pred cEEEEec-----------cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcc---cceeeeeeccccccceEEEEEC
Confidence 3677776 8899999998862 12444557788899999999974 3355555433333 2221111
Q ss_pred cc------------cCccEEEEEEcCCCCeEEEEe--cCCeEEEEEccc-cceeeeeeeecccceeEEEeeCC--CCCcE
Q 020107 102 KI------------SSSMCLCLEWNPSATSITVGL--SDGSVSIVSVVE-SQLEVLQQWKAHEFELWATSFDV--HQPHM 164 (331)
Q Consensus 102 ~~------------~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 164 (331)
.- +...+..+ ++++.+.++. .|+.|++|++.. ++. +..+..|...++.++|+| .++.+
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~--~~s~~~~~~~v~~l~fs~~~g~~~~ 195 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGG--KENQFLMPPEETILTFAEVQGMQEA 195 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCE--EEEEEECCCSSCEEEEEEEETSTTE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCce--eeeeccCCCceeeEEeeccCCCCce
Confidence 00 11222222 3333344432 389999999954 543 566677888888888886 25689
Q ss_pred EEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE------------EEEecCCeEEEEEecCCCCCc
Q 020107 165 VYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL------------LTGSYDEYLRVWDVRSISKPV 232 (331)
Q Consensus 165 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~ 232 (331)
|++++.|++|+|||+++++++..+.....+...+.+++|+| ++.++ ++|+.|++|++||..++ +.+
T Consensus 196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l 273 (356)
T 2w18_A 196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSV 273 (356)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTT-EEE
T ss_pred EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEE
Confidence 99999999999999999998888875122244688889999 88876 66889999999999875 333
Q ss_pred eeee----eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee-eeeecCCCCcccccccCc
Q 020107 233 NETS----VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY-GADWQRGRSSLEGKRKNS 307 (331)
Q Consensus 233 ~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~ 307 (331)
.... .+|...+.+..++ + ..+++++.|+.+++|++.. ++.+.++.+|...+. .++|+|++ +
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~t--Gk~l~tL~gH~~~vvs~vafSPDG---------~ 339 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLL--GQCTALLPPVSDQHWSFVKWSGTD---------S 339 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTT--CSEEEEECCC--CCCCEEEECSSS---------S
T ss_pred EEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCC--CcEEEEecCCCCCeEEEEEECCCC---------C
Confidence 3211 2444444444444 2 4566666788999999977 689999999988666 58999999 6
Q ss_pred EEEEeecCCCeEEEEcC
Q 020107 308 LVATCSFYDRLLRIWMP 324 (331)
Q Consensus 308 ~l~s~~~~d~~i~iW~~ 324 (331)
+|+||+ .|++|+|||+
T Consensus 340 ~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp EEEEEC-TTSCEEEEEE
T ss_pred EEEEEE-CCCcEEEecC
Confidence 999999 9999999986
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.8e-30 Score=218.81 Aligned_cols=263 Identities=11% Similarity=0.106 Sum_probs=204.4
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCCc
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGEK 102 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~~ 102 (331)
.++++++ .++.|++||+.+++ .......| ..+.+++|+|+ ++.| ++++.|+.+ +|++.+.+
T Consensus 3 ~l~vs~~----------~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~d----g~~l~~~~~~d~~i~v~d~~~~~ 65 (391)
T 1l0q_A 3 FAYIANS----------ESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPD----GTKVYVANAHSNDVSIIDTATNN 65 (391)
T ss_dssp EEEEEET----------TTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT----SSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEEcC----------CCCEEEEEECCCCe--EEEEeecC-CCcceEEECCC----CCEEEEECCCCCeEEEEECCCCe
Confidence 4667776 79999999998875 33333444 45899999999 7766 677789999 99998765
Q ss_pred c-----cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEE
Q 020107 103 I-----SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFS 175 (331)
Q Consensus 103 ~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~ 175 (331)
. ....+.+++|+|+++.|++++ .++.|++||+.+++. +..+.. ...+.+++|+| +++.+ ++++.++.|+
T Consensus 66 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--AGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred EEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE--EEEEeC-CCCcceEEECC-CCCEEEEEeCCCCEEE
Confidence 4 245899999999999876554 579999999998754 555554 44689999999 55555 7888999999
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG 254 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 254 (331)
+||+++++....+.. ...+.+++|+| +++.+ ++++.|+.|++||+++. +.... ..+...+.+++|+|++ .
T Consensus 142 ~~d~~~~~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~-~~~~~--~~~~~~~~~~~~~~~g-~ 212 (391)
T 1l0q_A 142 VINTVTKAVINTVSV----GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTN-SVIDT--VKVEAAPSGIAVNPEG-T 212 (391)
T ss_dssp EEETTTTEEEEEEEC----CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-EEEEE--EECSSEEEEEEECTTS-S
T ss_pred EEECCCCcEEEEEec----CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCC-eEEEE--EecCCCccceEECCCC-C
Confidence 999998876666654 45679999999 77766 67788999999999885 44443 5677789999999997 5
Q ss_pred eEEEEE---ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 255 LVLAAC---MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 255 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+++++ .++.+.+|++.. ++.+..+..|. .+.+++|+|++. .++++++ .|+.|++||++++.+
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~--------~l~~s~~-~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGK--------KVYVALS-FXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSS--------EEEEEET-TTTEEEEEETTTTEE
T ss_pred EEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCC--------EEEEEcC-CCCEEEEEECCCCcE
Confidence 555555 578888888866 46677777665 478999999984 3447777 899999999987643
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.8e-30 Score=223.84 Aligned_cols=276 Identities=11% Similarity=0.117 Sum_probs=213.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE----eEeeecCcEeEEEEcCCCCCCCC
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL----LYRMDTAGIFDIKWSPVGGNAGP 83 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~ 83 (331)
....+.+++|+|.+ .++++++ .++.|++||+.+++ .... ...+|...|.+++|+|+ +.
T Consensus 121 ~~~~~~~~~~s~~~---~~~~~~~----------~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~v~~~~~~~~----~~ 182 (433)
T 3bws_A 121 TGFQPKSVRFIDNT---RLAIPLL----------EDEGMDVLDINSGQ-TVRLSPPEKYKKKLGFVETISIPEH----NE 182 (433)
T ss_dssp CSSCBCCCEESSSS---EEEEEBT----------TSSSEEEEETTTCC-EEEECCCHHHHTTCCEEEEEEEGGG----TE
T ss_pred CCCCceEEEEeCCC---eEEEEeC----------CCCeEEEEECCCCe-EeeecCcccccccCCceeEEEEcCC----CE
Confidence 34456688888832 6777776 68899999998775 2221 22467788999999999 89
Q ss_pred eEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 84 FLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
++++++.|+.+ +|++.+.+. +...+.+++|+|+++.+++++ .++.|++||+++++. +..+.. ...+.++
T Consensus 183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~-~~~~~~~ 259 (433)
T 3bws_A 183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE--IRKTDK-IGLPRGL 259 (433)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEECCC-CSEEEEE
T ss_pred EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--EEEecC-CCCceEE
Confidence 99999999999 999987543 467899999999999885554 799999999988754 555554 3468999
Q ss_pred eeCCCCCcEEEEEc--------CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEecCCeEEEEEec
Q 020107 156 SFDVHQPHMVYTGS--------DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGSYDEYLRVWDVR 226 (331)
Q Consensus 156 ~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 226 (331)
+|+| +++.+++++ .|+.|++||+++++....+. |...+.+++|+| +++ ++++++.|+.|++||++
T Consensus 260 ~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 260 LLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECS-STTEEEEEETTTTEEEEEETT
T ss_pred EEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECC-CCCEEEEEecCCCEEEEEECC
Confidence 9999 777777777 58899999999887555443 566899999999 775 56777899999999999
Q ss_pred CCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---------------CcEEEEEEcCcccceeEEeecCCcceeee
Q 020107 227 SISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---------------NGFAVVKVGGEKAEVLETYAKHGSLAYGA 291 (331)
Q Consensus 227 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 291 (331)
+. +.... ..+...+.+++|+|++ ..+++++.+ +.+.+|++.. ++.+..+.. ...+.++
T Consensus 334 ~~-~~~~~--~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~--~~~~~~~~~-~~~~~~~ 406 (433)
T 3bws_A 334 EK-KVQKS--IPVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--DTVKEFWEA-GNQPTGL 406 (433)
T ss_dssp TT-EEEEE--EECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT--TEEEEEEEC-SSSEEEE
T ss_pred CC-cEEEE--ecCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCC--CcEEEEecC-CCCCceE
Confidence 74 44444 5678889999999997 455555542 4778888765 566777765 4578999
Q ss_pred eecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 292 DWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+|+|++ ++|++++..|+.|++|+++.
T Consensus 407 ~~s~dg---------~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 407 DVSPDN---------RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECTTS---------CEEEEEETTTTEEEEEEETT
T ss_pred EEcCCC---------CEEEEEECCCCeEEEEEecC
Confidence 999998 57776651599999999874
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-30 Score=223.92 Aligned_cols=232 Identities=14% Similarity=0.001 Sum_probs=188.0
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc---c---------------------------------------
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK---I--------------------------------------- 103 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~---~--------------------------------------- 103 (331)
.++.+++|+|+ +++|+++. ++.+ +|++.+++ .
T Consensus 5 ~p~~~v~~s~d----g~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRD----GSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSS----SSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCC----CCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 57899999999 88666664 5667 99987665 1
Q ss_pred ---------------------cCccEEEEEEcCCCCeE-EEEecCCeEEEEEcc--ccceeeeeeee--cccceeEEEee
Q 020107 104 ---------------------SSSMCLCLEWNPSATSI-TVGLSDGSVSIVSVV--ESQLEVLQQWK--AHEFELWATSF 157 (331)
Q Consensus 104 ---------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~--~~~~~v~~~~~ 157 (331)
+...|.+++|+|++++| ++++.||.|++||+. +++. +..+. .|...|.+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEEEECSSCEEEEEE
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeecccCCCCceEEEE
Confidence 11259999999999996 889999999999998 6644 44444 56788999999
Q ss_pred CCCCCcEEEEEcCCCeEEEEEccCCCcee----eeecccCCCcceEEEEEecCC---CCEEEEEecCCeEEEEEecCCCC
Q 020107 158 DVHQPHMVYTGSDDCKFSGWDIRESPFKL----AFQNSKIHKMGVCCIASIPSD---SNTLLTGSYDEYLRVWDVRSISK 230 (331)
Q Consensus 158 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~ 230 (331)
+| ++.+|++++.+|.+++|++.++.... .+.. |...|.+++|+| + +.+|++++.|+.|++||+++. .
T Consensus 158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~-~ 231 (450)
T 2vdu_B 158 AE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---HVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC-F 231 (450)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---CSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT-T
T ss_pred cC-CCCEEEEEeCCCcEEEEecCCcccccccceeeec---ccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC-c
Confidence 99 88999999999999999998876544 4444 999999999999 8 889999999999999999985 4
Q ss_pred CceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------------------------CC
Q 020107 231 PVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------------------------HG 285 (331)
Q Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------h~ 285 (331)
.+......|...|.+++|+ ++ .++++++.++.+++|++.. ++.+..+.. ..
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 4544346899999999999 65 7788888888999999876 456666652 23
Q ss_pred cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 286 SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 286 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
..|.+++|+|++ ++|++++..|+.|++|++
T Consensus 308 ~~v~~i~~~~~~---------~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 308 FAVSKIIKSKNL---------PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCEEEEEECSSS---------SEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEEeCCC---------CEEEEEECCCCeEEEEEe
Confidence 568999999998 566666536999999999
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.5e-31 Score=225.67 Aligned_cols=230 Identities=17% Similarity=0.264 Sum_probs=195.8
Q ss_pred eeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 63 RMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
..|...|.++.| + +++|++|+.||.+ +|++.+.+. |...|.+++| +++.|++|+.||.|++||+.
T Consensus 130 ~~~~~~v~~~~~--d----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEE--C----CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 345667998887 4 6699999999999 999987653 7889999998 78899999999999999999
Q ss_pred ccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 136 ESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
+++. +..+.+|...|.+++|++ +.+++++.||.|++||++++..........+|...|.+++| +++++++++
T Consensus 202 ~~~~--~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~ 273 (435)
T 1p22_A 202 TGEM--LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSAS 273 (435)
T ss_dssp SCCE--EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEE
T ss_pred CCcE--EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEe
Confidence 8854 778889999999999975 58999999999999999988765333333459999999999 468999999
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
.|+.|++||+++. +++.. +..|...|.++.|++ ..+++++.++.+++|++.. ++.+.++.+|...|.+++|
T Consensus 274 ~dg~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 274 GDRTIKVWNTSTC-EFVRT-LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp TTSEEEEEETTTC-CEEEE-EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEC--
T ss_pred CCCeEEEEECCcC-cEEEE-EcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCC--CCEEEEEeCCcCcEEEEEe--
Confidence 9999999999985 44444 578999999999953 6788888899999999987 5888899999999999999
Q ss_pred CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 296 GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++ .+|++++ .||.|++||+.++
T Consensus 345 ~~---------~~l~sg~-~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 DN---------KRIVSGA-YDGKIKVWDLVAA 366 (435)
T ss_dssp CS---------SEEEEEE-TTSCEEEEEHHHH
T ss_pred cC---------CEEEEEe-CCCcEEEEECCCC
Confidence 44 5899999 9999999998654
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-31 Score=226.76 Aligned_cols=229 Identities=13% Similarity=0.059 Sum_probs=165.4
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccce---EEeEeeecCcEeEEEEcC--------CCCCCCCeEEEEcCCc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL---ELLYRMDTAGIFDIKWSP--------VGGNAGPFLAQADADG 92 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~~~~~l~~~~~dg 92 (331)
+.+||+|+ .|++|+|||....+... ...+.+|.+.|++++|+| + +++||+++.|+
T Consensus 101 ~~~las~~----------~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d----~~~las~s~D~ 166 (393)
T 4gq1_A 101 SLFLACVC----------QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA----EQVIASVGDDC 166 (393)
T ss_dssp EEEEEEEE----------TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE----EEEEEEEETTS
T ss_pred CCEEEEEe----------CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC----CCEEEEEECCC
Confidence 36899998 89999999998865221 123468999999999998 5 78999999999
Q ss_pred cE-EEecCCCcc------cCccEEEEEEcCCCC-eEEEEecCCeEEEEEccccceee-----------------------
Q 020107 93 GL-LRDITGEKI------SSSMCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEV----------------------- 141 (331)
Q Consensus 93 ~i-iw~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~----------------------- 141 (331)
++ +||+.+... |...+.+++|+|++. +|++++.||+|++||+++++...
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99 999976543 678999999999875 79999999999999998754211
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEE------------------EE
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCI------------------AS 203 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~------------------~~ 203 (331)
.....+|...+.++.|.+.++..+++++.|+.+++||+..++....+.. |...+..+ .+
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccEEEccccccccccCcceeEEE
Confidence 0112357778899999855889999999999999999987765444433 33333222 23
Q ss_pred ec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 204 IP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 204 ~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+| .++.++++|+.||.|++||+.++.. ... ...|..+|.+++|+|++ .++++++++++.+|++...
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~-~~~~~~~V~svafspdG--~~LA~as~~Gv~lvrL~gf 390 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDS-NSI-PIQLGMPIVDFCWHQDG--SHLAIATEGSVLLTRLMGF 390 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTC-CEE-EEECSSCEEEEEECTTS--SEEEEEESSEEEEEEEGGG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcE-EEE-ecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEeCc
Confidence 33 2344677888999999999998643 333 47889999999999994 5566778899999998763
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5e-30 Score=215.11 Aligned_cols=246 Identities=9% Similarity=-0.044 Sum_probs=179.6
Q ss_pred EEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc----cCccEEEEEEcCCCCeE-EE
Q 020107 48 LFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI----SSSMCLCLEWNPSATSI-TV 122 (331)
Q Consensus 48 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~----~~~~v~~~~~~~~~~~l-~~ 122 (331)
+|++.... ++. ....|...|++++|+|+ +++|++|+.++..+|++..... +...+..+++.++++.+ ++
T Consensus 3 i~s~~~~~-~~~-~~~~h~~~V~~v~fs~d----g~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRN-PIV-PENHVSNPVTDYEFNQD----QSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ------------------CCCCCEEEECTT----SSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEE
T ss_pred cccccccC-Ccc-ccccCCCceEEEEECCC----CCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEE
Confidence 34444443 232 33779999999999999 9999999998866999876543 12346678888888887 56
Q ss_pred EecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-CceeeeecccCCCcceEEE
Q 020107 123 GLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQNSKIHKMGVCCI 201 (331)
Q Consensus 123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~ 201 (331)
++.|+.|++||..+++. +..+. +...|.+++|++ + .++++. ++.|++||+.+. +....+.. +...+
T Consensus 77 ~~~d~~v~iWd~~~~~~--~~~~~-~~~~v~~v~~~~-~--~~~~~~-~~~i~i~d~~~~~~~~~~~~~------~~~~~ 143 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQD--VSRIK-VDAPVKDLFLSR-E--FIVVSY-GDVISVFKFGNPWKRITDDIR------FGGVC 143 (355)
T ss_dssp CSSTTEEEEEETTTTEE--EEEEE-CSSCEEEEEECS-S--EEEEEE-TTEEEEEESSTTCCBSSCCEE------EEEEE
T ss_pred ECCccEEEEEECCCCcE--EEEEE-CCCceEEEEEcC-C--EEEEEE-cCEEEEEECCCCceeeEEecc------CCceE
Confidence 77789999999998754 55665 566899999987 3 344443 789999999987 54444432 34455
Q ss_pred EEecCCCCEEEE--EecCCeEEEEEecCCC--------------CCceeeeeecCCceEEEEECCCCCCeEEEEEecCc-
Q 020107 202 ASIPSDSNTLLT--GSYDEYLRVWDVRSIS--------------KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNG- 264 (331)
Q Consensus 202 ~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 264 (331)
++++ .++++ |+.||.|++||+++.. .+....+..|.++|++++|+|++ .++++++.++.
T Consensus 144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~ 219 (355)
T 3vu4_A 144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTI 219 (355)
T ss_dssp EEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSE
T ss_pred EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCE
Confidence 6665 45555 6899999999999753 12123357899999999999996 67777777777
Q ss_pred EEEEEEcCcccceeEEee-c-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 265 FAVVKVGGEKAEVLETYA-K-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+++|++.. ++.+.++. + |...|++++|+|++ ++|++++ .|++|++||+.++.
T Consensus 220 v~iwd~~~--~~~~~~~~~g~h~~~v~~~~~s~~~---------~~l~s~s-~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 220 IRVFKTED--GVLVREFRRGLDRADVVDMKWSTDG---------SKLAVVS-DKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEETTT--CCEEEEEECTTCCSCEEEEEECTTS---------CEEEEEE-TTCEEEEEESSCCS
T ss_pred EEEEECCC--CcEEEEEEcCCCCCcEEEEEECCCC---------CEEEEEE-CCCEEEEEEccCCC
Confidence 99999886 57888888 5 99999999999998 6999999 99999999997653
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=9.9e-29 Score=203.99 Aligned_cols=234 Identities=18% Similarity=0.255 Sum_probs=188.9
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.+|+|+|.+ ++||+|+ .||.|++|++.+++ ......+|...+.++.+.+. .+++++.
T Consensus 69 ~V~~v~~~~~~---~~l~sgs----------~Dg~v~iw~~~~~~--~~~~~~~h~~~~~~~~~~~~------~l~s~~~ 127 (318)
T 4ggc_A 69 YISSVAWIKEG---NYLAVGT----------SSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNSY------ILSSGSR 127 (318)
T ss_dssp CEEEEEECTTS---SEEEEEE----------TTSEEEEEETTTTE--EEEEEECCSSCEEEEEEETT------EEEEEET
T ss_pred eEEEEEECCCC---CEEEEEE----------CCCcEEEeecCCce--eEEEecCccceEEEeecCCC------EEEEEec
Confidence 46778887776 8999999 79999999999886 44445789888888776655 9999999
Q ss_pred CccE-EEecCCCc-------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--eeeeeeecccceeEEEeeCCC
Q 020107 91 DGGL-LRDITGEK-------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVH 160 (331)
Q Consensus 91 dg~i-iw~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 160 (331)
++.+ +|+..... .|...+..+.+.+++++|++++.||.|++||+++++. ........+...|.+++++|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 9999 77766543 2678899999999999999999999999999987643 223445567888999999986
Q ss_pred CCcEE--EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeee
Q 020107 161 QPHMV--YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 161 ~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+...+ ++++.++.|++||.+......... +...+..+.|+| .+..+++++ .|+.|++||++++ +++.. +
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~-l 280 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM-AKVAE-L 280 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC-CEEEE-E
T ss_pred CCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCC-cEEEE-E
Confidence 66654 456788999999999877544433 678899999999 777766554 7999999999985 55554 5
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
.+|.+.|++++|+|++ .++++++.|+.+++|++.+.
T Consensus 281 ~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 281 KGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCC
T ss_pred cCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Confidence 7899999999999997 67888888888999998764
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=222.75 Aligned_cols=230 Identities=11% Similarity=0.002 Sum_probs=177.6
Q ss_pred EeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC---cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc
Q 020107 60 LLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE---KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE 136 (331)
Q Consensus 60 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 136 (331)
...+.-...|.+++|+|+ |+++|+++.|+++. +.... +.|...|.+++|+|+| .++.+.+|+.+.
T Consensus 9 ~~~~~~~~~v~sv~~SpD----G~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 9 VDRKEFEDWKNNLTWARD----GTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ 76 (588)
T ss_dssp ECSCCCSSSSCCEEECTT----SCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred ccHhHhhccEEEEEECCC----CCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence 333445678999999999 99999999999994 33222 3578999999999998 455555555432
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc-----ceEEEEEecCCCCEE
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM-----GVCCIASIPSDSNTL 211 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l 211 (331)
. ....+ .|...|.+++|+| ++..|++++.||.|++||... ....+ . |.. .|.+++|+| ++++|
T Consensus 77 ~---~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l---~-~~~~~~~~sv~svafSP-DG~~L 144 (588)
T 2j04_A 77 N---GLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNL---D-SKGNLSSRTYHCFEWNP-IESSI 144 (588)
T ss_dssp S---CSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEEC---C-CSSCSTTTCEEEEEECS-SSSCE
T ss_pred c---eEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeec---c-CCCccccccEEEEEEcC-CCCEE
Confidence 2 22333 3578899999999 889999999999999999543 22222 2 443 599999999 99999
Q ss_pred EEEecCCeEEEEEecCCCC--C----ceee---eeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc-eeEEe
Q 020107 212 LTGSYDEYLRVWDVRSISK--P----VNET---SVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE-VLETY 281 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~--~----~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (331)
++|+.||+|++||+..+.. + +..+ ..+|...|.+++|+|+ + +++++.|+.+++|++...... ...++
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g-Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED--V-LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT--E-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC--c-EEEEeCCCeEEEEECCCCccccceeee
Confidence 9999999999999998531 1 2221 1456789999999999 5 888999999999998775322 34566
Q ss_pred -ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 282 -AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 282 -~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+|...|.+++|+ + +.||+++ +++|++||+.++.+
T Consensus 222 ~~~h~~~V~svaFs--g---------~~LASa~--~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 222 QNASRRKITDLKIV--D---------YKVVLTC--PGYVHKIDLKNYSI 257 (588)
T ss_dssp ECCCSSCCCCEEEE--T---------TEEEEEC--SSEEEEEETTTTEE
T ss_pred cccccCcEEEEEEE--C---------CEEEEEe--CCeEEEEECCCCeE
Confidence 4788999999999 4 5899988 69999999987754
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.5e-27 Score=202.78 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=205.5
Q ss_pred eecCcceeEeeecCCCCCcEE-EEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE
Q 020107 7 ELDGNADAVEFCPQDSYHHVL-AASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~l-a~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 85 (331)
.....+.+++|+|.+ ++| ++++ .++.|++||+.+++ .+..+ .. ...+.+++|+|+ +++|
T Consensus 29 ~~~~~~~~~~~s~dg---~~l~~~~~----------~d~~i~v~d~~~~~-~~~~~-~~-~~~v~~~~~spd----g~~l 88 (391)
T 1l0q_A 29 PVGSNPMGAVISPDG---TKVYVANA----------HSNDVSIIDTATNN-VIATV-PA-GSSPQGVAVSPD----GKQV 88 (391)
T ss_dssp ECSSSEEEEEECTTS---SEEEEEEG----------GGTEEEEEETTTTE-EEEEE-EC-SSSEEEEEECTT----SSEE
T ss_pred ecCCCcceEEECCCC---CEEEEECC----------CCCeEEEEECCCCe-EEEEE-EC-CCCccceEECCC----CCEE
Confidence 344567888998877 555 6665 59999999998875 33333 33 348999999999 7766
Q ss_pred E-EEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeE-EEEecCCeEEEEEccccceeeeeeeecccceeEEEee
Q 020107 86 A-QADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSI-TVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSF 157 (331)
Q Consensus 86 ~-~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 157 (331)
+ +++.++.+ +|++.+.+. +...+.+++|+|+++.+ ++++.++.|++||+.+++. +..+..+ ..+.+++|
T Consensus 89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~ 165 (391)
T 1l0q_A 89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSVG-RSPKGIAV 165 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEECC-SSEEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEecC-CCcceEEE
Confidence 4 55667888 999987654 34578999999999987 6777799999999988754 5555544 45689999
Q ss_pred CCCCCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCce
Q 020107 158 DVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVN 233 (331)
Q Consensus 158 ~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~ 233 (331)
+| +++.+ ++++.++.|++||+++++....+. +...+.+++|+| ++.+|++++ .++.|++||+++. +++.
T Consensus 166 ~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~ 238 (391)
T 1l0q_A 166 TP-DGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTN-KITA 238 (391)
T ss_dssp CT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTT-EEEE
T ss_pred CC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCC-eEEE
Confidence 99 55554 788899999999999887655554 466899999999 888888887 6899999999875 4444
Q ss_pred eeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCccee---eeeecCCCCc-----------
Q 020107 234 ETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAY---GADWQRGRSS----------- 299 (331)
Q Consensus 234 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~----------- 299 (331)
. ......+.+++|+|+++.++++++.++.+++|++.. ++.+..+..|..+.. .+.+.|++..
T Consensus 239 ~--~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~ 314 (391)
T 1l0q_A 239 R--IPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT--NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNIT 314 (391)
T ss_dssp E--EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCC
T ss_pred E--EecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC--CcEEEEEECCcCCCccceeeecccccccccccccccccc
Confidence 4 333456899999999733335556678888888876 566777765544321 1222221100
Q ss_pred ccccccC--cEEEEeecCCCeEEEEcCCCcc
Q 020107 300 LEGKRKN--SLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 300 ~~~~~~~--~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
....+.. ..+...+ .|..+++|++.++.
T Consensus 315 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 315 SGYIFLSEPVQFTDLS-KDATEWKWDFGDGS 344 (391)
T ss_dssp SSEEETTCCEEEEECC-BSCSEEEEECSSSC
T ss_pred cccccccceEEEEeCC-CCceEEEEECCCCc
Confidence 0000001 3466667 79999999998764
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.8e-29 Score=206.73 Aligned_cols=231 Identities=11% Similarity=0.090 Sum_probs=171.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcc--------cceEEeEeeecCcEeEEEEcC--CCCC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEE--------KNLELLYRMDTAGIFDIKWSP--VGGN 80 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~--~~~~ 80 (331)
.+.++.++|. +++|+ .|+.|++|+..... ..+......|...|.+++|+| +
T Consensus 78 ~v~~~~~~~~------~~s~s----------~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 138 (343)
T 3lrv_A 78 NPRTGGEHPA------IISRG----------PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN--- 138 (343)
T ss_dssp CCCTTCCCCS------EEEEC----------STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC------
T ss_pred CceeeeeCCc------eEEec----------CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC---
Confidence 3444445443 77887 79999999876321 123344446668899999999 8
Q ss_pred CCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec-ccce
Q 020107 81 AGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFE 151 (331)
Q Consensus 81 ~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~ 151 (331)
+++|++++.||.+ +|++.+.+. +...+.+++|+|++.+|++|+.||.|++||+++++. ....+.. |..+
T Consensus 139 -~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~-~~~~~~~~h~~~ 216 (343)
T 3lrv_A 139 -TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ-ASSRFPVDEEAK 216 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS-CCEECCCCTTSC
T ss_pred -CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC-CccEEeccCCCC
Confidence 8899999999999 999987654 345799999999999999999999999999998764 1156676 9999
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--EEEEEecCCCCEEEEEec-CCeEEEEEecCC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV--CCIASIPSDSNTLLTGSY-DEYLRVWDVRSI 228 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 228 (331)
|++++|+| ++.+|++++ ++.|++||+++.+....+.....|...+ .+++|+| ++.+|++++. |+.|++|++...
T Consensus 217 v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 217 IKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEccc
Confidence 99999999 889999999 5599999999987655554322233444 4699999 9999999998 999999999875
Q ss_pred CCCceeeeeecCCceEEEEECC---CCCCeEEEEEecCcEEEEEEcC
Q 020107 229 SKPVNETSVCLGGGVWRIKHHP---FIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.+.... .++..++|.| +. ..+++++.++.+.++-...
T Consensus 294 ~~~~~~------~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 294 TKNWTK------DEESALCLQSDTADF-TDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TCSEEE------EEEEECCC----CCC-CEEEEEEETTEEEEEEECS
T ss_pred ccceEe------cCceeEecCcccccc-ceeEEEecCCceEEEEecC
Confidence 333221 5678888888 54 5666777777765554433
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.5e-28 Score=210.33 Aligned_cols=235 Identities=8% Similarity=-0.047 Sum_probs=188.9
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEEEE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSIVS 133 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 133 (331)
...+.+++|+|+ +.++++++.++.+ +|++.+++. |...+.+++|+++++.+++++.|+.|++||
T Consensus 122 ~~~~~~~~~s~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 122 GFQPKSVRFIDN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp SSCBCCCEESSS----SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred CCCceEEEEeCC----CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 345779999996 8899999999999 999987543 355899999999999999999999999999
Q ss_pred ccccceeeeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 134 VVESQLEVLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
+++++. +..+..|...+.+++|+| ++..+ ++++.++.|++||+++++....+.. ...+.+++|+| ++++++
T Consensus 198 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~g~~l~ 269 (433)
T 3bws_A 198 LKTLAY--KATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK----IGLPRGLLLSK-DGKELY 269 (433)
T ss_dssp TTTCCE--EEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC----CSEEEEEEECT-TSSEEE
T ss_pred CCCceE--EEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC----CCCceEEEEcC-CCCEEE
Confidence 988754 666777888999999999 55555 6666899999999998876555543 45699999999 888888
Q ss_pred EEe--------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 213 TGS--------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 213 ~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
+++ .|+.|++||++++ +.+.. ..+...+..++|+|+++.++++++.++.+.+|++.. ++.+..+. +
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~-~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--~~~~~~~~-~ 343 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKE-KLIDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--KKVQKSIP-V 343 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTT-EEEEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--TEEEEEEE-C
T ss_pred EEECCCCccccCCCeEEEEECCCC-cEEee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--CcEEEEec-C
Confidence 888 4889999999875 44443 466678999999999744555556778888888875 45666665 6
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeecC---------------CCeEEEEcCCCcc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFY---------------DRLLRIWMPESDC 328 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~---------------d~~i~iW~~~~~~ 328 (331)
...+.+++|+|++ ++|++++ . ||.|++||+.++.
T Consensus 344 ~~~~~~~~~s~dg---------~~l~~~~-~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 344 FDKPNTIALSPDG---------KYLYVSC-RGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp SSSEEEEEECTTS---------SEEEEEE-CCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCCCCeEEEcCCC---------CEEEEEe-cCCCccccccccccccceEEEEEECCCCc
Confidence 7789999999998 5777766 4 5799999998764
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.1e-27 Score=202.07 Aligned_cols=282 Identities=11% Similarity=0.078 Sum_probs=201.3
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCC----cEEEEec--cCcccceEEeEeeecCcEeEEEEcCC-------
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNG----SISLFNV--NAEEKNLELLYRMDTAGIFDIKWSPV------- 77 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g----~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~~------- 77 (331)
.+....|.+.+. +++++|+.... .+| .|+|||+ .+++......+.+|...+..+++++.
T Consensus 64 ~~~~~~w~~~g~--~~~~~g~~~~~------~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 64 EVQPAAWSALGI--DAVVVGQVTPN------PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GCCHHHHHTTTC--CEEEEEEEEEC------TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHhcCC--CEEEEEEEEEC------CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 445566666665 68888863211 367 8999999 77653334556788888888877751
Q ss_pred -C---CCCCCeEEEEcCC------ccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCC---eEEEEEccccc
Q 020107 78 -G---GNAGPFLAQADAD------GGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDG---SVSIVSVVESQ 138 (331)
Q Consensus 78 -~---~~~~~~l~~~~~d------g~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~ 138 (331)
. .. +..++.++.+ +.+ +|++..... |...+.+++|+|+++.|++++.++ .|++||+.+++
T Consensus 136 ~g~~~~~-~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 136 TGIKGAF-RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp HSSCCCT-TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred cCCCCcC-CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 0 00 2355555443 567 999976543 567899999999999999999875 99999999876
Q ss_pred eeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCe--EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 139 LEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCK--FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
. ..+..+...+.+++|+| +++.|+ +++.++. |++||+++++. ..+.. |...+.+++|+| +++.|++++
T Consensus 215 ~---~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~---~~~~~~~~~~sp-dg~~l~~~s 285 (415)
T 2hqs_A 215 V---RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD---GRSNNTEPTWFP-DSQNLAFTS 285 (415)
T ss_dssp E---EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCC---CSSCEEEEEECT-TSSEEEEEE
T ss_pred E---EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcC---CCCcccceEECC-CCCEEEEEE
Confidence 4 34556777899999999 666565 7766654 99999998764 34443 788899999999 999888887
Q ss_pred c-CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeecCCccee
Q 020107 216 Y-DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAKHGSLAY 289 (331)
Q Consensus 216 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~ 289 (331)
. ++ .|.+||+.+. +. .. ...+...+..++|+|++ ..++.++.+ ..+.+|++.. ++. ..+..|. .+.
T Consensus 286 ~~~g~~~i~~~d~~~~-~~-~~-l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~--~~~-~~l~~~~-~~~ 357 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGG-AP-QR-ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLAT--GGV-QVLSSTF-LDE 357 (415)
T ss_dssp CTTSSCEEEEEETTSS-CC-EE-CCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTT--CCE-EECCCSS-SCE
T ss_pred CCCCCcEEEEEECCCC-CE-EE-EecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCC--CCE-EEecCCC-CcC
Confidence 6 45 6777788764 22 22 24567789999999997 555555554 2455666554 333 4555554 899
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCC---eEEEEcCCCcc
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDR---LLRIWMPESDC 328 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~---~i~iW~~~~~~ 328 (331)
+++|+|++ ++|++++ .++ .|++||++.+.
T Consensus 358 ~~~~spdg---------~~l~~~s-~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 358 TPSLAPNG---------TMVIYSS-SQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEECTTS---------SEEEEEE-EETTEEEEEEEETTSCC
T ss_pred CeEEcCCC---------CEEEEEE-cCCCccEEEEEECCCCc
Confidence 99999999 6888887 666 89999987654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.5e-26 Score=185.55 Aligned_cols=198 Identities=7% Similarity=-0.035 Sum_probs=138.6
Q ss_pred EEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcccCccEEEEEEcC---CCCeEEE
Q 020107 46 ISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKISSSMCLCLEWNP---SATSITV 122 (331)
Q Consensus 46 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~~~---~~~~l~~ 122 (331)
+.+|++.+++ .+.....+|...|..++++|+ ++.+++-. .|...+..++|++ +++.|++
T Consensus 137 ~~v~~l~~g~-lv~ss~~g~d~~V~~~~~s~d----G~~~~s~~-------------~~~~~v~~l~fs~~~g~~~~LaS 198 (356)
T 2w18_A 137 KAVLGLTKRR-LVSSSGTLSDQQVEVMTFAED----GGGKENQF-------------LMPPEETILTFAEVQGMQEALLG 198 (356)
T ss_dssp EEEEEETTTE-EEEEESSSTTCEEEEEEECTT----SCEEEEEE-------------ECCCSSCEEEEEEEETSTTEEEE
T ss_pred EEEEecCCCc-EEEecccCCCCcEEEEEECCC----Cceeeeec-------------cCCCceeeEEeeccCCCCceEEE
Confidence 6666665432 222223446666777777666 55555321 2556677888888 7799999
Q ss_pred EecCCeEEEEEccccceeeeeeeeccc---ceeEEEeeCCCCCcEE------------EEEcCCCeEEEEEccCCCceee
Q 020107 123 GLSDGSVSIVSVVESQLEVLQQWKAHE---FELWATSFDVHQPHMV------------YTGSDDCKFSGWDIRESPFKLA 187 (331)
Q Consensus 123 ~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~ 187 (331)
++.|++|++||+++++. ++.+.+|. ..+.+++|+| ++.++ ++|+.|++|++||..+++....
T Consensus 199 gS~D~TIkIWDl~TGk~--l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 199 TTIMNNIVIWNLKTGQL--LKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp EETTSEEEEEETTTCCE--EEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred ecCCCcEEEEECCCCcE--EEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 99999999999999865 77777543 3577779999 66765 6688899999999999876554
Q ss_pred eec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceE-EEEECCCCCCeEEEEEecCc
Q 020107 188 FQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVW-RIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 188 ~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 264 (331)
+.. ..+|...+.+..+ ++.++++++.|++|+|||+.++ +.+.. +.+|...+. .++|+|++ .++++++.|+.
T Consensus 276 ~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG-k~l~t-L~gH~~~vvs~vafSPDG-~~LaSGS~D~T 349 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG-QCTAL-LPPVSDQHWSFVKWSGTD-SHLLAGQKDGN 349 (356)
T ss_dssp EEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC-SEEEE-ECCC--CCCCEEEECSSS-SEEEEECTTSC
T ss_pred EEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC-cEEEE-ecCCCCCeEEEEEECCCC-CEEEEEECCCc
Confidence 421 2346655544444 4679999999999999999985 55554 456776655 68999997 67778888889
Q ss_pred EEEEEE
Q 020107 265 FAVVKV 270 (331)
Q Consensus 265 ~~~~~~ 270 (331)
+++|++
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=6.3e-25 Score=183.02 Aligned_cols=266 Identities=9% Similarity=0.056 Sum_probs=179.3
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC-ccE-EEecC--CCcc-------cCccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD-GGL-LRDIT--GEKI-------SSSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-g~i-iw~~~--~~~~-------~~~~v~~ 110 (331)
.++.|++|+++............+...+..++|+|+ +++|++++.+ +.+ +|++. ++.. ....+..
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 88 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC----CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcE
Confidence 599999999964221111222346678999999999 8888888776 788 99987 3332 1246788
Q ss_pred EEEcCCCCeEEEEec-CCeEEEEEccccc-eeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccC-CCcee
Q 020107 111 LEWNPSATSITVGLS-DGSVSIVSVVESQ-LEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRE-SPFKL 186 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~ 186 (331)
++|+|+++.|++++. ++.|.+||+..+. ......+.. ...+.+++|+| +++.+++++ .++.|++||+.+ ++...
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceee
Confidence 999999998877665 8899999994322 122344443 34588999999 666666655 899999999987 54322
Q ss_pred ee--ecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCce--eeeeec------CCceEEEEECCCCCCe
Q 020107 187 AF--QNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVN--ETSVCL------GGGVWRIKHHPFIPGL 255 (331)
Q Consensus 187 ~~--~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~--~~~~~~------~~~v~~~~~~~~~~~~ 255 (331)
.. .........+..++|+| ++++++++ ..++.|.+||+......+. ...... ...+..++|+|++ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~ 244 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG-RH 244 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS-SE
T ss_pred ecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC-CE
Confidence 11 11111345788999999 88866555 4889999999964222221 111111 2356689999997 44
Q ss_pred EEEEE-ecCcEEEEEEcCc--ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 256 VLAAC-MHNGFAVVKVGGE--KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 256 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+++++ .++.+.+|++... ..+.+..+..+.. +.+++|+|++ ++|++++..++.|.+|+++
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg---------~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG---------KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS---------SEEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC---------CEEEEecCCCCeEEEEEEc
Confidence 55444 6788999999842 2345555555544 8899999998 4555554268999999554
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.1e-24 Score=186.22 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=177.1
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc---cE-EEecCCCcc-----cCccEEEEEEc
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG---GL-LRDITGEKI-----SSSMCLCLEWN 114 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg---~i-iw~~~~~~~-----~~~~v~~~~~~ 114 (331)
+.|++||++... ...+ ..|...|.+++|+|+ ++.|++++.++ .+ +|++.+++. +...+.+++|+
T Consensus 159 ~~i~i~d~~g~~--~~~l-~~~~~~v~~~~~Spd----g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 159 YELRVSDYDGYN--QFVV-HRSPQPLMSPAWSPD----GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS 231 (415)
T ss_dssp EEEEEEETTSCS--CEEE-EEESSCEEEEEECTT----SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC
T ss_pred ceEEEEcCCCCC--CEEE-eCCCCcceeeEEcCC----CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc
Confidence 799999998643 4444 578899999999999 89999998875 66 999987654 45678999999
Q ss_pred CCCCeEE-EEecCCe--EEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CC--eEEEEEccCCCceeee
Q 020107 115 PSATSIT-VGLSDGS--VSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DC--KFSGWDIRESPFKLAF 188 (331)
Q Consensus 115 ~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~ 188 (331)
|+++.|+ +++.++. |++||+.+++. ..+..|...+.+++|+| +++.|++++. ++ .|.+||+.+++. ..+
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l 306 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI 306 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence 9999887 5665554 99999988653 45666788899999999 7777776665 45 677789887763 333
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN-- 263 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-- 263 (331)
.. +...+.+++|+| ++++|++++.+ ..|++||+.+++ . .. +..+. .+.+++|+|++ ..++.++.++
T Consensus 307 ~~---~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~-l~~~~-~~~~~~~spdg-~~l~~~s~~~~~ 377 (415)
T 2hqs_A 307 TW---EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG-V-QV-LSSTF-LDETPSLAPNG-TMVIYSSSQGMG 377 (415)
T ss_dssp CC---SSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCC-E-EE-CCCSS-SCEEEEECTTS-SEEEEEEEETTE
T ss_pred ec---CCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCC-E-EE-ecCCC-CcCCeEEcCCC-CEEEEEEcCCCc
Confidence 33 677899999999 99999888865 589999998753 2 22 23443 89999999997 5566666666
Q ss_pred -cEEEEEEcCcccceeEEeecCCcceeeeeecCCC
Q 020107 264 -GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
.+.+|++. +.....+.+|.+.|.+++|+|..
T Consensus 378 ~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 378 SVLNLVSTD---GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEETT---SCCEEECCCSSSEEEEEEECCCC
T ss_pred cEEEEEECC---CCcEEEeeCCCCCCcCCcccccc
Confidence 34444443 56778889999999999999975
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9.2e-25 Score=192.35 Aligned_cols=274 Identities=11% Similarity=0.016 Sum_probs=205.0
Q ss_pred CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEec-
Q 020107 21 DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDI- 98 (331)
Q Consensus 21 ~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~- 98 (331)
+|++.+++++. .++.|.+||..+.+ .+..+..++. +..++|+|+ +++|++++.|+.+ +|++
T Consensus 146 ~p~~~~~vs~~----------~d~~V~v~D~~t~~-~~~~i~~g~~--~~~v~~spd----g~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 146 DLPNLFSVTLR----------DAGQIALVDGDSKK-IVKVIDTGYA--VHISRMSAS----GRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CGGGEEEEEEG----------GGTEEEEEETTTCC-EEEEEECSTT--EEEEEECTT----SCEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEEc----------CCCeEEEEECCCce-EEEEEecCcc--cceEEECCC----CCEEEEECCCCeEEEEECc
Confidence 34447777776 69999999998876 3444422333 889999999 9999999999999 9999
Q ss_pred -CCCcc-----cCccEEEEEEcC----CCCeEEEEec-CCeEEEEEccccceeeeeeeec----------c-cceeEEEe
Q 020107 99 -TGEKI-----SSSMCLCLEWNP----SATSITVGLS-DGSVSIVSVVESQLEVLQQWKA----------H-EFELWATS 156 (331)
Q Consensus 99 -~~~~~-----~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~----------~-~~~v~~~~ 156 (331)
.+.+. +...+..++|+| +++++++++. +++|.+||..+.+. +..+.. | ...+..+.
T Consensus 209 ~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 209 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceeecccCcccCccccccCCceEEEE
Confidence 66543 245578999999 9999999985 89999999988754 444443 2 23688999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 235 (331)
++|.++.++++...++.|.+||..+.+....... . +...+..+.|+| ++++|++++ .+++|.+||..++ +.+..+
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg-~l~~~i 362 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDR-RLSALV 362 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCC-eEEEee
Confidence 9996777888889999999999988765442222 1 566788999999 888766554 6899999999985 444432
Q ss_pred ee---ecCCceEEEEECCCCCCeEEEEE--ecCcEEEEEEcCcc-----cceeEEeecCCcceeeeeecCCCCccccccc
Q 020107 236 SV---CLGGGVWRIKHHPFIPGLVLAAC--MHNGFAVVKVGGEK-----AEVLETYAKHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
.. +|.+....+ ++|++ +.+++++ .++.+.+|++.... .+.++++.+|...+..++++|++
T Consensus 363 ~~g~~ph~g~g~~~-~~p~~-g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-------- 432 (543)
T 1nir_A 363 DVGKTPHPGRGANF-VHPKY-GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-------- 432 (543)
T ss_dssp ECSSSBCCTTCEEE-EETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC--------
T ss_pred ccCCCCCCCCCccc-CCCCC-ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC--------
Confidence 11 255444443 46775 4444544 46888999987622 68899999999889999999999
Q ss_pred CcEEEEeecC-------CCeEEEEcCCCccc
Q 020107 306 NSLVATCSFY-------DRLLRIWMPESDCL 329 (331)
Q Consensus 306 ~~~l~s~~~~-------d~~i~iW~~~~~~~ 329 (331)
++|++++ . +++|.+||++++..
T Consensus 433 -~~l~v~~-~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 433 -SHLYVDT-TFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp -CEEEECC-TTCSSHHHHTCEEEEETTCTTS
T ss_pred -CcEEEec-CCCCCcccCceEEEEECCCCCC
Confidence 5777764 2 67999999998753
No 131
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.94 E-value=1.6e-23 Score=175.16 Aligned_cols=283 Identities=12% Similarity=0.101 Sum_probs=189.4
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEE-eEeeecCcEeEEEEcCCCCCCCCeEEEEcC---CccE-EEecC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLEL-LYRMDTAGIFDIKWSPVGGNAGPFLAQADA---DGGL-LRDIT 99 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i-iw~~~ 99 (331)
+.+++|+|.. ..++.|++|.++.....+.. ....+...+..++|+|+ ++ |++++. ++.+ +|++.
T Consensus 3 ~~~~vg~y~~------~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd----g~-l~~~~~~~~~~~v~~~~~~ 71 (347)
T 3hfq_A 3 ERILFGTYTK------KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK----DC-LYSVDKEDDEGGIAAWQID 71 (347)
T ss_dssp EEEEEEECCS------SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT----CE-EEEEEEETTEEEEEEEEEE
T ss_pred cEEEEEeccC------CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC----Ce-EEEEEecCCCceEEEEEec
Confidence 4677777532 23667999988764333333 22345667889999999 77 555543 5777 99986
Q ss_pred CCcc--------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEcc-ccceeeeeeeec---------ccceeEEEeeCCC
Q 020107 100 GEKI--------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVV-ESQLEVLQQWKA---------HEFELWATSFDVH 160 (331)
Q Consensus 100 ~~~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~---------~~~~v~~~~~~~~ 160 (331)
++.. +...+..++|+|++++|++++ .++.|.+|++. .+....+..+.. ....+.+++|+|
T Consensus 72 ~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp- 150 (347)
T 3hfq_A 72 GQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP- 150 (347)
T ss_dssp TTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-
T ss_pred CCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-
Confidence 5542 345667899999999988887 68999999995 334333443322 122478899999
Q ss_pred CCcEEEEEcCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCeEEEEEecCCCCCcee--ee
Q 020107 161 QPHMVYTGSDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEYLRVWDVRSISKPVNE--TS 236 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~--~~ 236 (331)
+++++++...++.|++||+. +++..............+..++|+| +++++++ +..++.|.+|++......+.. ..
T Consensus 151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 65677777788999999998 4432222111111234678899999 8886555 567889999999852122111 11
Q ss_pred eecC------CceEEEEECCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107 237 VCLG------GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 237 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
.... ..+..++|+|+++.++++...++.+.+|++... ..+.+..+..+...+..++|+|++ ++|
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg---------~~l 300 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE---------AFV 300 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS---------SEE
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC---------CEE
Confidence 1112 458899999997334445555788999999743 235566666667778999999999 577
Q ss_pred EEeecCCCeEEEE--cCCCccc
Q 020107 310 ATCSFYDRLLRIW--MPESDCL 329 (331)
Q Consensus 310 ~s~~~~d~~i~iW--~~~~~~~ 329 (331)
++++..++.|.+| |.+++.+
T Consensus 301 ~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 301 VVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEcCCCcEEEEEEeCCCCeE
Confidence 7666245999999 5556544
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=9.1e-25 Score=200.60 Aligned_cols=276 Identities=9% Similarity=0.009 Sum_probs=200.2
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCC-CC-----cEEEEeccCcccceEEeEeeec-----------------
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSR-NG-----SISLFNVNAEEKNLELLYRMDT----------------- 66 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~-~g-----~i~vw~~~~~~~~~~~~~~~~~----------------- 66 (331)
..+..++|+|++ ++|++++ . ++ .|++||+.+++ ...+...+.
T Consensus 37 ~~~~~~~~SpdG---~~la~~~----------~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (741)
T 2ecf_A 37 PTLMKPKVAPDG---SRVTFLR----------GKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRE 101 (741)
T ss_dssp CCCEEEEECTTS---SEEEEEE----------CCSSCTTEEEEEEEETTTCC--EEEEECGGGTC---------------
T ss_pred CCCCCceEecCC---CEEEEEe----------ccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhh
Confidence 357789998887 8999988 4 66 89999998875 333333332
Q ss_pred -------CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---cc-----cCccEEEEEEcCCCCeEEEEecCCeEE
Q 020107 67 -------AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---KI-----SSSMCLCLEWNPSATSITVGLSDGSVS 130 (331)
Q Consensus 67 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 130 (331)
..|.+++|+|+ +++|++++. +.+ +|++.+. .. +...+..++|+|+|+.|+.++. +.|+
T Consensus 102 ~~~~~~~~~v~~~~~SpD----g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~ 175 (741)
T 2ecf_A 102 RQRIAAMTGIVDYQWSPD----AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLW 175 (741)
T ss_dssp -----CCEESCCCEECTT----SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEE
T ss_pred hhhhccccCcceeEECCC----CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEE
Confidence 23889999999 999998887 777 9999877 43 3567899999999999998874 6999
Q ss_pred EEEccccceeeeeeeecccce----------------eEEEeeCCCCCcEEEEEcCCC----------------------
Q 020107 131 IVSVVESQLEVLQQWKAHEFE----------------LWATSFDVHQPHMVYTGSDDC---------------------- 172 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~~dg---------------------- 172 (331)
+||+.+++.. .....+... +..++|+| +++.|++++.|+
T Consensus 176 ~~d~~~g~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 176 VIDLASGRQM--QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp EEETTTTEEE--ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred EEecCCCCEE--EeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 9999887542 222222221 47899999 778888877665
Q ss_pred -----------eEEEEEccC-CCceeeeecccCCCcceEEEEEecCCCCEEEEEec-----CCeEEEEEecCCCCCceee
Q 020107 173 -----------KFSGWDIRE-SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-----DEYLRVWDVRSISKPVNET 235 (331)
Q Consensus 173 -----------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~ 235 (331)
.|.+||+.+ ++....... ..|...+..++| | +++.|++.+. +..|++||+.+++ ....
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~- 327 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLG-KEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVL- 327 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCC-SCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC-EEEE-
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCC-CCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc-eEEE-
Confidence 789999988 764433221 237788999999 9 9998887764 5689999998853 2222
Q ss_pred eeecCC----ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeee-eecCCCCcccccccCcEEE
Q 020107 236 SVCLGG----GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGA-DWQRGRSSLEGKRKNSLVA 310 (331)
Q Consensus 236 ~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~ 310 (331)
...+.. .+..++|+|++ .+++++..++...+|.+... +. ...+..|...+..+ .|+|++. .+++
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~--------~l~~ 396 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKAG--------LAYF 396 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTTT--------EEEE
T ss_pred EEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCCC--------EEEE
Confidence 233332 45689999997 45555555566778887644 34 67788888888887 5999984 3444
Q ss_pred EeecCCC--eEEEEcCCC
Q 020107 311 TCSFYDR--LLRIWMPES 326 (331)
Q Consensus 311 s~~~~d~--~i~iW~~~~ 326 (331)
+++ .++ .++||+++.
T Consensus 397 ~~~-~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 397 RAG-IESARESQIYAVPL 413 (741)
T ss_dssp EEC-SSCTTCBEEEEEET
T ss_pred EEe-CCCCceEEEEEEEc
Confidence 555 566 899999753
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.1e-23 Score=174.93 Aligned_cols=262 Identities=8% Similarity=0.032 Sum_probs=177.6
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCCcc-------cCccEEEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGEKI-------SSSMCLCLE 112 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~~~-------~~~~v~~~~ 112 (331)
.++.|++||+.+++ +......+...+ .++|+|+ ++++++++. ++.+ +|++.+.+. +..+..+++
T Consensus 18 ~~~~v~~~d~~~~~--~~~~~~~~~~~~-~~~~s~d----g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
T 3u4y_A 18 HLRRISFFSTDTLE--ILNQITLGYDFV-DTAITSD----CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD 90 (331)
T ss_dssp GGTEEEEEETTTCC--EEEEEECCCCEE-EEEECSS----SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred CCCeEEEEeCcccc--eeeeEEccCCcc-eEEEcCC----CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence 68999999998875 333334455566 9999999 776655554 7788 999987764 123333499
Q ss_pred EcCCCCeEEEEecCC---eEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCe-EEEEEccCCCceee
Q 020107 113 WNPSATSITVGLSDG---SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCK-FSGWDIRESPFKLA 187 (331)
Q Consensus 113 ~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~ 187 (331)
|+|++++++++..++ .|.+||+.+++. +..+.. .....+++|+| +++ ++++...++. |.+|++........
T Consensus 91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIPI-PYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp ECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEEC-CTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred ECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEEC-CCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 999999999655553 899999988754 445543 33568999999 555 5555566688 99999986443211
Q ss_pred e--ecccCCCcceEEEEEecCCCCEEE-EEecCCeEEEEEecCCCCC---ceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 188 F--QNSKIHKMGVCCIASIPSDSNTLL-TGSYDEYLRVWDVRSISKP---VNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 188 ~--~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
. .. ......+..++|+| ++++++ ++..++.|++||+.++ +. +.. ......+..++|+|+++.++++...
T Consensus 167 ~~~~~-~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~--~~~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 167 TGQEF-ISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQNP-ENITLLNA--VGTNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEEEE-ECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSST-TSCEEEEE--EECSSCCCCEEECTTSSEEEEECSS
T ss_pred cCCcc-ccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCCC-cccceeee--ccCCCCCceEEECCCCCEEEEEEcC
Confidence 1 11 11355689999999 888554 4556899999999875 43 333 4456778899999997334444445
Q ss_pred cCcEEEEEEcCcccceeEEeecC----Ccc---eeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 262 HNGFAVVKVGGEKAEVLETYAKH----GSL---AYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
++.+.+|++.....+.+..+..+ ... ...++|+|++. .+++++. .++.|.+||+++..
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~-~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET--------KLFISAN-ISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS--------EEEEEET-TTTEEEEEETTSCE
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC--------EEEEecC-CCCcEEEEEecCCc
Confidence 66677777765322224444332 222 24589999994 3345555 67899999998653
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=3.8e-24 Score=174.34 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=178.4
Q ss_pred CCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCC-Ccc------c-CccEEEE
Q 020107 41 SRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITG-EKI------S-SSMCLCL 111 (331)
Q Consensus 41 ~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~-~~~------~-~~~v~~~ 111 (331)
..++.|++||+.+.+ ...+ ..|...|.+++|+|+ +++|++++ ++.+ +|++.+ .+. + ...+.++
T Consensus 19 ~~~~~i~~~d~~~~~--~~~~-~~~~~~v~~~~~spd----g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRK--MRVV-WQTPELFEAPNWSPD----GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp CCCEEEEEEETTTTE--EEEE-EEESSCCEEEEECTT----SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred CcceeEEEEeCCCCc--eeee-ccCCcceEeeEECCC----CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence 368999999998875 3333 458889999999999 89999887 6677 999988 543 1 3567889
Q ss_pred EEcCCCCeEEEEec--CCeEEEEEc--cccceeeeeeeecccceeEEEeeCCCCCcEEE-EEcCCCeEEEEEccCC-Cce
Q 020107 112 EWNPSATSITVGLS--DGSVSIVSV--VESQLEVLQQWKAHEFELWATSFDVHQPHMVY-TGSDDCKFSGWDIRES-PFK 185 (331)
Q Consensus 112 ~~~~~~~~l~~~~~--dg~i~i~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~-~~~ 185 (331)
+|+|+++.|++++. ++...+|.+ .+++ ...+..+. .+..++|+| +++.++ ++..++.+++|+++.. ...
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT---PRLMTKNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC---CEECCSSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc---eEEeecCC-CccceEECC-CCCEEEEEECCCCceEEEEEECCCCcc
Confidence 99999999999983 345555554 4443 23343333 488999999 556554 7888999999997532 223
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec--
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH-- 262 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-- 262 (331)
..+.. +...+.++.|+| +++.|+.++ .++.+++|+++........ +..+...+..++|+|++ ..+++++.+
T Consensus 166 ~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg-~~l~~~~~~~~ 239 (297)
T 2ojh_A 166 TRLTH---GEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVER-ITDSAYGDWFPHPSPSG-DKVVFVSYDAD 239 (297)
T ss_dssp EECCC---SSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEE-CCCCSEEEEEEEECTTS-SEEEEEEEETT
T ss_pred eEccc---CCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEE-EecCCcccCCeEECCCC-CEEEEEEcCCC
Confidence 33333 778899999999 888777666 5899999999743344433 45677789999999997 555555544
Q ss_pred ---------CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 263 ---------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 263 ---------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
..+.+|++.......+..+.+|...+..++|+|++ ++|++++
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg---------~~l~~~~ 290 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG---------DEFAYVR 290 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS---------SEEEEEE
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC---------CEEEEEE
Confidence 34677776654344455566888899999999999 5777776
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.6e-23 Score=181.04 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=202.7
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEec--cCcccceEEeEeeecCcEeEEEEcC----CCCCCCCe
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNV--NAEEKNLELLYRMDTAGIFDIKWSP----VGGNAGPF 84 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~ 84 (331)
.+..++++|++ ++|++++ .++.|++||+ .+.+ .+..+ . +...+..++|+| + +++
T Consensus 180 ~~~~v~~spdg---~~l~v~~----------~d~~V~v~D~~~~t~~-~~~~i-~-~g~~p~~va~sp~~~~d----g~~ 239 (543)
T 1nir_A 180 AVHISRMSASG---RYLLVIG----------RDARIDMIDLWAKEPT-KVAEI-K-IGIEARSVESSKFKGYE----DRY 239 (543)
T ss_dssp TEEEEEECTTS---CEEEEEE----------TTSEEEEEETTSSSCE-EEEEE-E-CCSEEEEEEECCSTTCT----TTE
T ss_pred ccceEEECCCC---CEEEEEC----------CCCeEEEEECcCCCCc-EEEEE-e-cCCCcceEEeCCCcCCC----CCE
Confidence 45677787776 8999998 6899999999 5543 33333 3 455689999999 8 889
Q ss_pred EEEEcC-CccE-EEecCCCcc----------------c-CccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeee
Q 020107 85 LAQADA-DGGL-LRDITGEKI----------------S-SSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQ 144 (331)
Q Consensus 85 l~~~~~-dg~i-iw~~~~~~~----------------~-~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~ 144 (331)
|++++. ++.+ +||..+.+. | ...+.++.++|+++. +++...++.|.+||+.+.+...+..
T Consensus 240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE
Confidence 998885 7888 998876543 1 126788999998776 5556679999999998765422334
Q ss_pred eecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeec-ccCCCcceEEEEEecCCCCEEEEEe-cCCeEE
Q 020107 145 WKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQN-SKIHKMGVCCIASIPSDSNTLLTGS-YDEYLR 221 (331)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~ 221 (331)
+. +...+..++|+| +++++ +++..+++|.+||+.+++....+.. ..+|......+ ++|..+.+++++. .|++|.
T Consensus 320 i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 320 IG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp EE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred ec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEE
Confidence 43 556688999999 66654 5556789999999999987766653 12255444333 4773367777775 589999
Q ss_pred EEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEEE-------ecCcEEEEEEcCccccee-EEe------
Q 020107 222 VWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-------MHNGFAVVKVGGEKAEVL-ETY------ 281 (331)
Q Consensus 222 iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~------ 281 (331)
+||+.+.+ +.+.. +..|.+.+..++++|++ ..+.+.. .++.+.+|++...+ .. ..+
T Consensus 397 v~d~~~~~~~~~~~~~v~~-l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~--~~~~~~~v~~~~ 472 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAE-LQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD--AKYQVLPIAEWA 472 (543)
T ss_dssp EEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT--SCCEEECHHHHH
T ss_pred EEEeCCCCCchhcCeEEEE-EEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC--CCeEEeechhhc
Confidence 99998721 33333 56777888999999997 4444443 26799999998753 33 333
Q ss_pred --ecCCcceeeeeecCCCCcccccccCcEEEEee----cCCCeEEEEcCCCccc
Q 020107 282 --AKHGSLAYGADWQRGRSSLEGKRKNSLVATCS----FYDRLLRIWMPESDCL 329 (331)
Q Consensus 282 --~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~----~~d~~i~iW~~~~~~~ 329 (331)
..+...+..++|+|++. .++.+. ..|+.|.|||.+++.+
T Consensus 473 ~~~~~~~~~~~~~~~~~g~---------~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGD---------EVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CCCSSCCEEEEEEECSSSS---------EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred ccCCCCCceEeccCCCCCC---------EEEEEeecCCCCCCeEEEEECCCceE
Confidence 35678899999999994 555432 1479999999998764
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.4e-24 Score=198.78 Aligned_cols=282 Identities=8% Similarity=0.039 Sum_probs=191.6
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~ 86 (331)
....+++|+|++ ++++++ .+|.|++||+.+++ ...+...|.. .|.+++|||+ +++|+
T Consensus 17 ~~~~~~~~spdg---~~~~~~-----------~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpD----g~~l~ 76 (723)
T 1xfd_A 17 IHDPEAKWISDT---EFIYRE-----------QKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPD----REYAL 76 (723)
T ss_dssp CCCCCCCBSSSS---CBCCCC-----------SSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTT----SSEEE
T ss_pred ccccccEEcCCC---cEEEEe-----------CCCCEEEEECCCCc--EEEEeccccccccccceEEECCC----CCEEE
Confidence 456788888876 677663 58999999999876 3444455554 4999999999 99999
Q ss_pred EEcCC---------ccE-EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 87 QADAD---------GGL-LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 87 ~~~~d---------g~i-iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
+++.+ +.+ +|++.+++. +...+..++|+|+|+.|+.++. +.|++||+.+++.. .....+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~--~~~~~~ 153 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI--RVVSTG 153 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE--EEECCC
T ss_pred EEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE--EEecCC
Confidence 98765 555 999987653 1223778999999999999886 79999999887542 222222
Q ss_pred cc------------------eeEEEeeCCCCCcEEEEEcCCC----------------------------------eEEE
Q 020107 149 EF------------------ELWATSFDVHQPHMVYTGSDDC----------------------------------KFSG 176 (331)
Q Consensus 149 ~~------------------~v~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i 176 (331)
.. .+.+++|+| +++.|++++.++ .|++
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 22 237899999 778888776543 7999
Q ss_pred EEccCCCceeeeecc---cCCCcceEEEEEecCCCCEEEEEec----CCeEEEEEecCCCCCceeeeeecCCceE----E
Q 020107 177 WDIRESPFKLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSISKPVNETSVCLGGGVW----R 245 (331)
Q Consensus 177 ~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~v~----~ 245 (331)
||+.+++....+... ..+...+..++|+| +++++++... +..|++||+.++ +........+.+.+. .
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCC
Confidence 999987754444430 11367899999999 9988877653 357999999875 333321233444443 7
Q ss_pred EEECCCCCCeEEEEEe-cC----cEEEEEEc-Ccccc--eeEEeecCCcceee-eeecCCCCcccccccCcEEEEeecCC
Q 020107 246 IKHHPFIPGLVLAACM-HN----GFAVVKVG-GEKAE--VLETYAKHGSLAYG-ADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~-~~~~~--~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
++|+|+++.++++++. ++ ...+|.+. ...+. ....+..+...+.. ++|+|++ +.|+..+..+
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg---------~~l~~~~~~~ 381 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG---------NKIYFLSTED 381 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT---------TEEEEEESSS
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC---------CEEEEEEcCC
Confidence 8999998555554343 33 34455554 22222 13444433344444 6999999 5776555144
Q ss_pred --CeEEEEcCCC
Q 020107 317 --RLLRIWMPES 326 (331)
Q Consensus 317 --~~i~iW~~~~ 326 (331)
+.+++|+++.
T Consensus 382 ~~~~~~l~~~~~ 393 (723)
T 1xfd_A 382 LPRRRQLYSANT 393 (723)
T ss_dssp CTTCCEEEEECS
T ss_pred CCcceEEEEEeC
Confidence 8899999853
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=3e-23 Score=189.48 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=197.2
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+.+++|+|+ ..++.+. ++.|++||+.+++ ...+ ..+...+.+++|+|+ ++.|+.+
T Consensus 82 ~~v~~~~~spd----~~~~~~~-----------~~~i~~~d~~~~~--~~~l-~~~~~~~~~~~~Spd----G~~la~~- 138 (706)
T 2z3z_A 82 FPSFRTLDAGR----GLVVLFT-----------QGGLVGFDMLARK--VTYL-FDTNEETASLDFSPV----GDRVAYV- 138 (706)
T ss_dssp CCCEEEEETTT----TEEEEEE-----------TTEEEEEETTTTE--EEEE-ECCTTCCTTCEECTT----SSEEEEE-
T ss_pred cCceeEEECCC----CeEEEEE-----------CCEEEEEECCCCc--eEEc-cCCcccccCCcCCCC----CCEEEEE-
Confidence 35778888876 3555555 7999999998764 3333 346677999999999 8899885
Q ss_pred CCccE-EEecCC-----Cccc------Ccc--------------EEEEEEcCCCCeEEEEe-------------------
Q 020107 90 ADGGL-LRDITG-----EKIS------SSM--------------CLCLEWNPSATSITVGL------------------- 124 (331)
Q Consensus 90 ~dg~i-iw~~~~-----~~~~------~~~--------------v~~~~~~~~~~~l~~~~------------------- 124 (331)
.++.+ +|++.+ ++.. ... +.++.|+|||+.|++++
T Consensus 139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~ 218 (706)
T 2z3z_A 139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEA 218 (706)
T ss_dssp ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSC
T ss_pred ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 67888 999987 5431 121 47899999999999987
Q ss_pred --------------cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCce
Q 020107 125 --------------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFK 185 (331)
Q Consensus 125 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 185 (331)
.+..|.+||+.+++...+.....|...+..++|+| +++.|++++.++ .|++||+.+++..
T Consensus 219 ~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 219 ESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp EEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred ceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 45789999999876433332235667899999999 778888877665 8999999988433
Q ss_pred eeeecccCCCc---ceEEEEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEE-EEECCCCCCeEEEEE
Q 020107 186 LAFQNSKIHKM---GVCCIASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWR-IKHHPFIPGLVLAAC 260 (331)
Q Consensus 186 ~~~~~~~~~~~---~v~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~ 260 (331)
..+.. ..+.. .+.++.|+| .++++++++..|+.+++|++......+.. +..+...+.. ++|+|++ ..++.++
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~v~~~~~~spdg-~~l~~~~ 374 (706)
T 2z3z_A 298 RTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWEVTNFAGFDPKG-TRLYFES 374 (706)
T ss_dssp EEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSCEEEEEEECTTS-SEEEEEE
T ss_pred eEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeEEEeeeEEcCCC-CEEEEEe
Confidence 33322 11222 346789998 25668899999999999998732333333 3556667876 8999997 4555555
Q ss_pred ecCc---EEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---CeEEEEcCCCcc
Q 020107 261 MHNG---FAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD---RLLRIWMPESDC 328 (331)
Q Consensus 261 ~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d---~~i~iW~~~~~~ 328 (331)
.+++ ..+|.+....++ ...+. |...+.+++|+|++ ++|+.....+ +.|++||++++.
T Consensus 375 ~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg---------~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDG---------SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTS---------SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCC---------CEEEEEecCCCCCcEEEEEECCCCe
Confidence 5442 567766544333 33443 66778999999999 4666553133 569999998764
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.2e-22 Score=168.70 Aligned_cols=261 Identities=10% Similarity=0.015 Sum_probs=184.9
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC-cEeEEEEcCCCCCCCCeE-EEEcCCccE-EEecCCC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA-GIFDIKWSPVGGNAGPFL-AQADADGGL-LRDITGE 101 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l-~~~~~dg~i-iw~~~~~ 101 (331)
++|++++ .++.|++||+.+.+ .+..+..++.. .+..++|+|+ ++.+ +++..++.+ +|++.+.
T Consensus 2 ~~~v~~~----------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~d----g~~l~v~~~~~~~v~~~d~~~~ 66 (337)
T 1pby_B 2 DYILAPA----------RPDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPG----GRIAYATVNKSESLVKIDLVTG 66 (337)
T ss_dssp EEEEEEE----------TTTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTT----SSEEEEEETTTTEEEEEETTTC
T ss_pred cEEEEcC----------CCCeEEEEECCCCc-EEEEEEcCCCCCCccceEEcCC----CCEEEEEeCCCCeEEEEECCCC
Confidence 5778887 79999999998865 33333222222 4889999999 7655 566667888 9998775
Q ss_pred ccc-----Cc------cEEEEEEcCCCCeEEEEe------------cCCeEEEEEccccceeeeeeeecccceeEEEeeC
Q 020107 102 KIS-----SS------MCLCLEWNPSATSITVGL------------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD 158 (331)
Q Consensus 102 ~~~-----~~------~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 158 (331)
+.. .. .+..++|+|+++.++++. .++.|.+||+.+++. +..+.. ...+.+++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s 143 (337)
T 1pby_B 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWA 143 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEEC
T ss_pred CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEeC-CCCcceeEEC
Confidence 531 11 566899999999998886 579999999987654 444443 4457889999
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CC-------------------
Q 020107 159 VHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DE------------------- 218 (331)
Q Consensus 159 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~------------------- 218 (331)
| +++.++++ ++.|.+||+.+++....+.. ..+..+ +.|+| ++..++..+. ++
T Consensus 144 ~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~-~~~~~~---~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 144 R-DGSKLYGL--GRDLHVMDPEAGTLVEDKPI-QSWEAE---TYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp T-TSSCEEEE--SSSEEEEETTTTEEEEEECS-TTTTTT---TBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred C-CCCEEEEe--CCeEEEEECCCCcEeeeeec-cccCCC---ceeCC-CccEEeeeccCCCceeeeeecccccccccccc
Confidence 9 66767666 68899999998876555543 111122 36788 6665544432 22
Q ss_pred ----eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 219 ----YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 219 ----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
.|.+||+.+.+.. ......+...+..++|+|++ ..++++ ++.+.+|++.. ++.+..+.. ...+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEK--NASIKRVPL-PHSYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTT--TEEEEEEEC-SSCCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCC--CcCcceecC-CCceeeEEEC
Confidence 4689999885432 33245666788899999997 444444 68888888765 455666553 3467899999
Q ss_pred CCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 295 RGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 295 ~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
|++ ++|++++ .++.|++||++++.
T Consensus 289 ~dg---------~~l~~~~-~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 289 TDG---------STVWLGG-ALGDLAAYDAETLE 312 (337)
T ss_dssp TTS---------CEEEEES-BSSEEEEEETTTCC
T ss_pred CCC---------CEEEEEc-CCCcEEEEECcCCc
Confidence 998 5777778 89999999998764
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4.5e-23 Score=189.39 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=198.5
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCccc-ceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEK-NLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
+.+++|+|++ ++|++++ ++.|++||+.++.. ....+ ..|...+..++|+|+ +++|+.++.
T Consensus 111 v~~~~~SpDg---~~l~~~~-----------~~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD----G~~la~~~~ 171 (741)
T 2ecf_A 111 IVDYQWSPDA---QRLLFPL-----------GGELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK----GGFVSFIRG 171 (741)
T ss_dssp SCCCEECTTS---SEEEEEE-----------TTEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT----SSEEEEEET
T ss_pred cceeEECCCC---CEEEEEe-----------CCcEEEEECCCCCcceEEEc-ccCCcccccccCCCC----CCEEEEEeC
Confidence 5678888877 8999998 59999999987610 12222 456778999999999 999998875
Q ss_pred CccE-EEecCCCccc------Ccc----------------EEEEEEcCCCCeEEEEecCC--------------------
Q 020107 91 DGGL-LRDITGEKIS------SSM----------------CLCLEWNPSATSITVGLSDG-------------------- 127 (331)
Q Consensus 91 dg~i-iw~~~~~~~~------~~~----------------v~~~~~~~~~~~l~~~~~dg-------------------- 127 (331)
+.+ +|++.+++.. ... +.+++|+|||+.|++++.|+
T Consensus 172 -~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 172 -RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp -TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred -CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 466 9998875431 111 47799999999999988765
Q ss_pred -------------eEEEEEccc-cceeeeeeeecccceeEEEeeCCCCCcEEEEEc-----CCCeEEEEEccCCCceeee
Q 020107 128 -------------SVSIVSVVE-SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-----DDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 128 -------------~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~ 188 (331)
.|.+||+.+ ++...+.....|...+..++| | +++.|++++ .+..|++||+.+++....+
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 788999987 764322211247788999999 9 777777654 3578999999998866655
Q ss_pred ecccCCCc----ceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-EECCCCCCeEEEEEecC
Q 020107 189 QNSKIHKM----GVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-KHHPFIPGLVLAACMHN 263 (331)
Q Consensus 189 ~~~~~~~~----~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~ 263 (331)
.. +.. .+..+.|+| +++++++++.|+.++||.+..... ... +..+...+..+ .|+|++ ..++.++.++
T Consensus 329 ~~---~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~-l~~~~~~v~~~~~~s~dg-~~l~~~~~~~ 401 (741)
T 2ecf_A 329 HE---TSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAA-LTHGNWSVDELLAVDEKA-GLAYFRAGIE 401 (741)
T ss_dssp EE---ECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSSC-EEE-SCCSSSCEEEEEEEETTT-TEEEEEECSS
T ss_pred Ec---CCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCCC-eee-eeecceEEEeEeEEeCCC-CEEEEEEeCC
Confidence 54 322 456889999 888999999999888988874333 332 45677788887 599997 4555555444
Q ss_pred ---cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC---CeEEEEcCCCc
Q 020107 264 ---GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD---RLLRIWMPESD 327 (331)
Q Consensus 264 ---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d---~~i~iW~~~~~ 327 (331)
.+++|.+... +.....+.. ...+..++|+|++. +|+...... ..+.+|+.+.+
T Consensus 402 ~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~---------~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 402 SARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNAS---------VYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSS---------EEEEEEEETTEEEEEEEEETTSC
T ss_pred CCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCC---------EEEEEecCCCCCCeEEEEEcCCC
Confidence 6789988654 344555655 56788999999994 555443133 47888887554
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=3.6e-21 Score=160.96 Aligned_cols=270 Identities=9% Similarity=0.032 Sum_probs=189.8
Q ss_pred eeeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCe
Q 020107 5 HCELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPF 84 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 84 (331)
...+...+..++++|.+ +++++++..... ...++.|.+||..+.+ ....+ . ....+..++|+|+ ++.
T Consensus 36 ~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~---~~~~~~v~~~d~~~~~-~~~~~-~-~~~~~~~~~~s~d----g~~ 102 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQE---NALWLATSQSRK---LDKGGVVYRLDPVTLE-VTQAI-H-NDLKPFGATINNT----TQT 102 (353)
T ss_dssp EEEEESSEEEEEEETTT---TEEEEEECCCTT---TEESEEEEEECTTTCC-EEEEE-E-ESSCCCSEEEETT----TTE
T ss_pred hhhhccCccceEECCCC---CEEEEEcCCCcC---CCCCccEEEEcCCCCe-EEEEE-e-cCCCcceEEECCC----CCE
Confidence 34556678889999976 667666521000 0016789999998875 33333 2 2345789999999 774
Q ss_pred -EEEEcCCccE-EEecCCCccc------Cc---------cEEEEEEcCCCCeEEEEe--cCCeEEEEEccccceeeeeee
Q 020107 85 -LAQADADGGL-LRDITGEKIS------SS---------MCLCLEWNPSATSITVGL--SDGSVSIVSVVESQLEVLQQW 145 (331)
Q Consensus 85 -l~~~~~dg~i-iw~~~~~~~~------~~---------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 145 (331)
+++...++.+ +|+..+.+.. .. .+.++.|+|+++.++++. .++.|.+||+.+++. +..+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~--~~~~ 180 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL--KTAI 180 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--EEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--EEEe
Confidence 4555667888 9998776541 11 268899999999887776 478999999988754 5555
Q ss_pred ecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc-cCCCcceEEEEEecCCCCEEEEEe-cCCeEEEE
Q 020107 146 KAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVW 223 (331)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iw 223 (331)
..+...+..++|+| +++.+++++.++.|.+||+.+++....+... .++...+..++|+| +++++++++ .++.|.+|
T Consensus 181 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 181 QNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp CCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEE
T ss_pred cCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEE
Confidence 54555688999998 7788888888999999999988766655541 12455688999999 887666665 45999999
Q ss_pred EecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 224 DVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
|+.++ +.+.. ..... ...++|+|+++.++++...++.+.+|+... ++.+..+... ..+.+++|+|++.
T Consensus 259 d~~~~-~~~~~--~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 259 DTRNG-NILAK--VAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp ETTTC-CEEEE--EECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-SEEEEEEECTTSC
T ss_pred ECCCC-cEEEE--EEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-CCCCeEEEcCCCC
Confidence 99875 44443 22222 367999999833444444577788887655 4666666643 4678999999983
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.3e-22 Score=185.34 Aligned_cols=275 Identities=9% Similarity=0.011 Sum_probs=186.8
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce-EEeEeee----------------cCcEeEEEE
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL-ELLYRMD----------------TAGIFDIKW 74 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~-~~~~~~~----------------~~~v~~~~~ 74 (331)
+..+.|. + +.++.+. .++ | +||+.+++. . ..+...+ ...|.+++|
T Consensus 28 ~~~~~w~--g---~~~~~~~----------~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 89 (706)
T 2z3z_A 28 VVGLQWM--G---DNYVFIE----------GDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD 89 (706)
T ss_dssp CTTCEEE--T---TEEEEEE----------TTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEE
T ss_pred CCCCcCc--C---CeEEEEe----------CCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEE
Confidence 4557787 3 4555555 466 8 999988762 1 3332221 146999999
Q ss_pred cCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-----cceeeee
Q 020107 75 SPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-----SQLEVLQ 143 (331)
Q Consensus 75 ~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~ 143 (331)
+|+ +.++++. ++.+ +|++.+.+. +...+.+++|+|+|+.|+++ .++.|++|++.+ ++.. .
T Consensus 90 spd----~~~~~~~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~--~ 160 (706)
T 2z3z_A 90 AGR----GLVVLFT--QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI--A 160 (706)
T ss_dssp TTT----TEEEEEE--TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE--E
T ss_pred CCC----CeEEEEE--CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE--E
Confidence 999 5566654 4788 999987654 34567789999999999885 679999999987 6542 2
Q ss_pred eeecccce--------------eEEEeeCCCCCcEEEEEc---------------------------------CCCeEEE
Q 020107 144 QWKAHEFE--------------LWATSFDVHQPHMVYTGS---------------------------------DDCKFSG 176 (331)
Q Consensus 144 ~~~~~~~~--------------v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i 176 (331)
....+... +.+++|+| +++.|++++ .+..|++
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 22222222 47899999 788888876 4468999
Q ss_pred EEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecCCCCCceeee-eecCC---ceEEEE
Q 020107 177 WDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRSISKPVNETS-VCLGG---GVWRIK 247 (331)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~---~v~~~~ 247 (331)
||+.+++....... ..|...+.+++|+| +++.|++++.++ .|++||+.+++. ..... ..+.. .+..++
T Consensus 240 ~d~~~~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 240 YHLATGKTVYLQTG-EPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EETTTTEEEECCCC-SCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSSCCCCCSCCE
T ss_pred EECCCCceEeeccC-CCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCCeECccCCce
Confidence 99998764433322 23677899999999 999999988776 899999987522 22212 22222 246789
Q ss_pred ECC--CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceee-eeecCCCCcccccccCcEEEEeecCCC----eEE
Q 020107 248 HHP--FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYG-ADWQRGRSSLEGKRKNSLVATCSFYDR----LLR 320 (331)
Q Consensus 248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~~d~----~i~ 320 (331)
|+| ++ .+++++..++.+++|.+... +..+..+..|...+.. ++|+|++. .++++++ .++ .|.
T Consensus 317 ~sp~~dg-~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~--------~l~~~~~-~~~~~~~~l~ 385 (706)
T 2z3z_A 317 FLPGSNN-QFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGT--------RLYFEST-EASPLERHFY 385 (706)
T ss_dssp ECTTCSS-EEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSS--------EEEEEES-SSCTTCBEEE
T ss_pred eecCCCC-EEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCC--------EEEEEec-CCCCceEEEE
Confidence 999 86 45555555666788888743 5667777778777877 79999984 3444444 555 777
Q ss_pred EEcCCCcc
Q 020107 321 IWMPESDC 328 (331)
Q Consensus 321 iW~~~~~~ 328 (331)
.|+++++.
T Consensus 386 ~~d~~~~~ 393 (706)
T 2z3z_A 386 CIDIKGGK 393 (706)
T ss_dssp EEETTCCC
T ss_pred EEEcCCCC
Confidence 77877654
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.5e-23 Score=176.93 Aligned_cols=195 Identities=10% Similarity=-0.013 Sum_probs=146.8
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC-----------c----------ccCccEEEEEEcCCCCeEE---
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE-----------K----------ISSSMCLCLEWNPSATSIT--- 121 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~-----------~----------~~~~~v~~~~~~~~~~~l~--- 121 (331)
...++.++++++ +.++++++.++..+|+.... . .+...|.+++|+|++++|+
T Consensus 36 ~~~~n~lavs~~----~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 36 KERSSLLAVSNK----YGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM 111 (434)
T ss_dssp CSCCBCEEEETT----TTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCCccEEEEecC----CCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEE
Confidence 345889999999 88999999998446553210 0 0234699999999999999
Q ss_pred -EEecCCeEEEEEcccc-----ce----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecc
Q 020107 122 -VGLSDGSVSIVSVVES-----QL----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNS 191 (331)
Q Consensus 122 -~~~~dg~i~i~d~~~~-----~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 191 (331)
+|+.|+.|++||+.+. +. ..+..+.+|...|.+++|+|.++++|++++.||.|++||++++........
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~- 190 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP- 190 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-
Confidence 7788999999999764 11 123456678999999999996589999999999999999998754333333
Q ss_pred cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-------cCCceEEEEECCCCCCeEEEE-EecC
Q 020107 192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-------LGGGVWRIKHHPFIPGLVLAA-CMHN 263 (331)
Q Consensus 192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~-~~~~ 263 (331)
|...|++++|+| ++++|++|+.||.|++||++ + ..... ... |...|.+++|+++ ..++++ +..+
T Consensus 191 --~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~-~~~~~-~~~~~~~~~~~~~~v~~v~w~~~--~~~l~~~~~~d 262 (434)
T 2oit_A 191 --STVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-L-QEKKV-IPCPPFYESDHPVRVLDVLWIGT--YVFAIVYAAAD 262 (434)
T ss_dssp --GGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-C-CEEEE-ECCCTTCCTTSCEEEEEEEEEET--TEEEEEEEETT
T ss_pred --CCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-C-ccccc-ccCCcccCCCCceeEEEEEEecC--ceEEEEEccCC
Confidence 888999999999 89999999999999999998 2 22222 111 2348999999997 444433 3222
Q ss_pred -------cEEEEEEcCc
Q 020107 264 -------GFAVVKVGGE 273 (331)
Q Consensus 264 -------~~~~~~~~~~ 273 (331)
.+++|++...
T Consensus 263 g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 263 GTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCSSSCCEEEEEECCCT
T ss_pred CccCCCCceEEEEeccC
Confidence 2778888764
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.7e-22 Score=163.36 Aligned_cols=229 Identities=16% Similarity=0.117 Sum_probs=166.9
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccC-cccceEEeEeee-cCcEeEEEEcCCCCCCCCeE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNA-EEKNLELLYRMD-TAGIFDIKWSPVGGNAGPFL 85 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l 85 (331)
....+.+++|+|.+ ++|+++. ++.|++||+.+ .+ ...+...+ ...+.+++|+|+ +++|
T Consensus 40 ~~~~v~~~~~spdg---~~l~~~~-----------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spd----g~~l 99 (297)
T 2ojh_A 40 TPELFEAPNWSPDG---KYLLLNS-----------EGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPD----GALY 99 (297)
T ss_dssp ESSCCEEEEECTTS---SEEEEEE-----------TTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTT----SSEE
T ss_pred CCcceEeeEECCCC---CEEEEEc-----------CCeEEEEeCCCCCC--ceEeccccccccccceEECCC----CCEE
Confidence 45678889998877 8999987 88999999988 64 33443444 467899999999 8899
Q ss_pred EEEcC--CccE-EEec--CCCcc----cCccEEEEEEcCCCCeEE-EEecCCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 86 AQADA--DGGL-LRDI--TGEKI----SSSMCLCLEWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 86 ~~~~~--dg~i-iw~~--~~~~~----~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
++++. ++.. +|.+ .+... ....+..++|+|+++.|+ ++..++.+++|+++.... ....+..+...+.++
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 178 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGP 178 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEE
T ss_pred EEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccc
Confidence 99883 3444 5544 44332 234588899999999877 677899999999654221 234555677789999
Q ss_pred eeCCCCCcEEEEE-cCCCeEEEEEcc-CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----------CeEEE
Q 020107 156 SFDVHQPHMVYTG-SDDCKFSGWDIR-ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----------EYLRV 222 (331)
Q Consensus 156 ~~~~~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------~~i~i 222 (331)
+|+| ++..++.+ ..++.+++|+++ .+.....+.. |...+.++.|+| ++++|++++.+ +.|.+
T Consensus 179 ~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 179 DYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred eECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEE
Confidence 9999 66666554 468999999987 3444444444 778899999999 99998888766 56999
Q ss_pred EEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 223 WDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
||+.+.+.........|...+..++|+|++ ..+++++.++
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~ 293 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYFP 293 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEECC
T ss_pred EecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEecc
Confidence 999875332222234778899999999997 5555555544
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.6e-21 Score=161.10 Aligned_cols=270 Identities=11% Similarity=0.125 Sum_probs=175.1
Q ss_pred ecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEE
Q 020107 8 LDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
....+.+++|+|.+ ++|++++. .++.|++|+++.....+..+.. .....+..++|+|+ +++|+
T Consensus 36 ~~~~~~~~~~spdg---~~l~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~ 99 (343)
T 1ri6_A 36 VPGQVQPMVVSPDK---RYLYVGVR---------PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ----GQFVF 99 (343)
T ss_dssp CSSCCCCEEECTTS---SEEEEEET---------TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT----SSEEE
T ss_pred cCCCCceEEECCCC---CEEEEeec---------CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCC----CCEEE
Confidence 44567788888876 77777772 2499999999832112222211 12337899999999 88776
Q ss_pred EEc-CCccE-EEecC---CCcc-----cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccc-cceeeee--eeec-ccce
Q 020107 87 QAD-ADGGL-LRDIT---GEKI-----SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVE-SQLEVLQ--QWKA-HEFE 151 (331)
Q Consensus 87 ~~~-~dg~i-iw~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~-~~~~ 151 (331)
+++ .++.+ +|++. .... ....+.+++|+|+++.+++++ .++.|.+||+.+ ++..... .+.. ....
T Consensus 100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 179 (343)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred EEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence 655 47778 99983 2111 234578899999999888887 799999999987 5543322 2332 2346
Q ss_pred eEEEeeCCCCCcE-EEEEcCCCeEEEEEccC--CCc--eeeeecccC---CCcceEEEEEecCCCCEEE-EEecCCeEEE
Q 020107 152 LWATSFDVHQPHM-VYTGSDDCKFSGWDIRE--SPF--KLAFQNSKI---HKMGVCCIASIPSDSNTLL-TGSYDEYLRV 222 (331)
Q Consensus 152 v~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i 222 (331)
+..++|+| ++++ ++++..++.|.+||+.. ++. ...+...+. ....+..++|+| ++++|+ ++..++.|.+
T Consensus 180 ~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 180 PRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITV 257 (343)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred cceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEE
Confidence 88899999 5664 45566899999999964 332 112221111 134577899999 887776 4557999999
Q ss_pred EEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc--ceeEEeecCCcceeeeeecCCC
Q 020107 223 WDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA--EVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 223 wd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
||+......... ........+..++|+|++ ..+++++ .++.+.+|++....+ +.+..+.. .....+++|.++.
T Consensus 258 ~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 258 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEECTTSCCEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred EEEcCCCCceEEeeeecCCCccceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 999842111111 112333448899999997 5555555 568888998875433 33444443 2345677777654
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=2.2e-20 Score=156.85 Aligned_cols=278 Identities=14% Similarity=0.060 Sum_probs=183.7
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC----ccE-EEecC
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD----GGL-LRDIT 99 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d----g~i-iw~~~ 99 (331)
.++.+|+|.. ..++.|++|.++.....+..+...+...+..++|+|+ +++|++++.+ +.+ +|++.
T Consensus 14 ~~~~vg~y~~------~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd----g~~l~~~~~~~~~~~~v~~~~~~ 83 (361)
T 3scy_A 14 LTMLVGTYTS------GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD----GKFVYSVNEFSKDQAAVSAFAFD 83 (361)
T ss_dssp EEEEEEECCS------SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT----SSEEEEEECCSSTTCEEEEEEEE
T ss_pred eEEEEEeccC------CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC----CCEEEEEEccCCCCCcEEEEEEe
Confidence 5788888742 2477899999875433344443336777889999999 8889988886 677 88876
Q ss_pred CC--cc--------cCccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccc-eeeeeee---ec--------ccceeEEEe
Q 020107 100 GE--KI--------SSSMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQ-LEVLQQW---KA--------HEFELWATS 156 (331)
Q Consensus 100 ~~--~~--------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~---~~--------~~~~v~~~~ 156 (331)
.. .. +......+++ ++++|++++ .++.|.+|++.... ...+... .+ +...+.+++
T Consensus 84 ~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 84 KEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp TTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred CCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 52 21 2345667777 788777776 58899999997532 1111111 11 122357899
Q ss_pred eCCCCCc-EEEEEcCCCeEEEEEccCCCc------e------eeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEE
Q 020107 157 FDVHQPH-MVYTGSDDCKFSGWDIRESPF------K------LAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRV 222 (331)
Q Consensus 157 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i 222 (331)
|+| +++ ++++...++.|++|++..... . ..... .+...+..++|+| +++++++++ .++.|.+
T Consensus 162 ~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 162 ITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNS-DGKFAYLINEIGGTVIA 237 (361)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTCEEEE
T ss_pred ECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcC-CCCEEEEEcCCCCeEEE
Confidence 999 666 455555689999999886542 1 11121 2456688999999 998887777 6899999
Q ss_pred EEecCCCCCceeee---eecCCceEEEEECCCCCCeEEEEEe--cCcEEEEEEcCcccc--eeEEeecCCcceeeeeecC
Q 020107 223 WDVRSISKPVNETS---VCLGGGVWRIKHHPFIPGLVLAACM--HNGFAVVKVGGEKAE--VLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 223 wd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~ 295 (331)
||+.++........ ..+...+..++|+|++ ..++++.. ++.+.+|++....++ .+..+.. ...+.+++|+|
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp 315 (361)
T 3scy_A 238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP 315 (361)
T ss_dssp EEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT
T ss_pred EEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC
Confidence 99986421111101 1223456899999997 45555554 477999999743233 4445544 55788999999
Q ss_pred CCCcccccccCcEEEEeecCCCeEEEE--cCCCccc
Q 020107 296 GRSSLEGKRKNSLVATCSFYDRLLRIW--MPESDCL 329 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s~~~~d~~i~iW--~~~~~~~ 329 (331)
++ ++|++++..++.|.+| |.+++.+
T Consensus 316 dg---------~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 316 NG---------KYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp TS---------CEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CC---------CEEEEEECCCCCEEEEEEECCCCcE
Confidence 99 5666665367999996 4445543
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=1.7e-22 Score=173.40 Aligned_cols=207 Identities=9% Similarity=-0.039 Sum_probs=151.0
Q ss_pred cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce--------eeee-----eeecccceeEEEeeCCCCCcEEE----
Q 020107 104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL--------EVLQ-----QWKAHEFELWATSFDVHQPHMVY---- 166 (331)
Q Consensus 104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~-----~~~~~~~~v~~~~~~~~~~~~l~---- 166 (331)
+...+..+++++++.++++++.++ +++|+...-.. ..+. ....+...|.+++|+| ++++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEe
Confidence 344578899999999999999888 88887643100 0000 0112456799999999 778888
Q ss_pred EEcCCCeEEEEEccCC--------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee
Q 020107 167 TGSDDCKFSGWDIRES--------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC 238 (331)
Q Consensus 167 ~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 238 (331)
+++.|+.|++||+++. +....+....+|...|.+++|+|..+.+|++++.||+|++||+++. ..... ...
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-~~~ 190 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-TLP 190 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-EEC
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-ccC
Confidence 7889999999999765 2222334345589999999999944899999999999999999985 22222 356
Q ss_pred cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------CCcceeeeeecCCCCcccccccCcEEEE
Q 020107 239 LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------HGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 239 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
|...|.+++|+|++ ..+++++.++.+++|++.. +....+.. |...|.++.|+++. .++++
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~---------~~l~~ 257 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPTL---QEKKVIPCPPFYESDHPVRVLDVLWIGTY---------VFAIV 257 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTTC---CEEEEECCCTTCCTTSCEEEEEEEEEETT---------EEEEE
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccCC---cccccccCCcccCCCCceeEEEEEEecCc---------eEEEE
Confidence 88899999999997 7778888888888888762 33344433 33489999999987 46654
Q ss_pred eecCCC------eEEEEcCCCc
Q 020107 312 CSFYDR------LLRIWMPESD 327 (331)
Q Consensus 312 ~~~~d~------~i~iW~~~~~ 327 (331)
.+..|| .+++|++.+.
T Consensus 258 ~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 258 YAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTCCSSSCCEEEEEECCCT
T ss_pred EccCCCccCCCCceEEEEeccC
Confidence 332443 3899998754
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.6e-22 Score=185.06 Aligned_cols=279 Identities=9% Similarity=-0.009 Sum_probs=188.0
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC---cEeEEEEcCCCCCCCCeEEEE
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA---GIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~ 88 (331)
...++|+|++ ++++.+ .++.|++||+.+++ ...+...|.. .+.+++|||+ +++|+.+
T Consensus 18 ~~~~~~s~dg---~~~~~~-----------~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpD----g~~la~~ 77 (719)
T 1z68_A 18 TFFPNWISGQ---EYLHQS-----------ADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPD----RQFVYLE 77 (719)
T ss_dssp CCCCEESSSS---EEEEEC-----------TTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTT----SSEEEEE
T ss_pred CCccEECCCC---eEEEEc-----------CCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCC----CCeEEEE
Confidence 3478888877 666665 38999999999876 4444454443 4899999999 9999988
Q ss_pred cC---------CccE-EEecCCCcc---c--CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-
Q 020107 89 DA---------DGGL-LRDITGEKI---S--SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL- 152 (331)
Q Consensus 89 ~~---------dg~i-iw~~~~~~~---~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v- 152 (331)
+. ++.+ +|++.+++. . ...+..++|+|||+.|+.+. ++.|++|++.+++...+. ..++...+
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-~~~~~~~v~ 155 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-FNGRENKIF 155 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-CCCBTTTEE
T ss_pred ecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-cCCCcCCeE
Confidence 76 6777 999988765 2 35678899999999999885 789999999887542221 12222212
Q ss_pred ----------------EEEeeCCCCCcEEEEEcCCC----------------------------------eEEEEEccCC
Q 020107 153 ----------------WATSFDVHQPHMVYTGSDDC----------------------------------KFSGWDIRES 182 (331)
Q Consensus 153 ----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~ 182 (331)
.+++|+| +++.|++++.|. .|++||+.++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~ 234 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP 234 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred cccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence 4899999 888888877542 7889999877
Q ss_pred Cce--eeee---cccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEE----ecCCCCCceeee---eecCCceE--
Q 020107 183 PFK--LAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWD----VRSISKPVNETS---VCLGGGVW-- 244 (331)
Q Consensus 183 ~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~~---~~~~~~v~-- 244 (331)
+.. ..+. ....|...+.+++|+| ++.++++.... ..|.+|| ..++ +...... ..|.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 312 (719)
T 1z68_A 235 AYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGF 312 (719)
T ss_dssp HHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSS
T ss_pred CccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccc
Confidence 542 1111 0123788899999999 78777774432 2488889 6553 2222211 35666676
Q ss_pred ---EEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC----C
Q 020107 245 ---RIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY----D 316 (331)
Q Consensus 245 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~----d 316 (331)
.++|+|++..+++.++ .++...+|.+....++ ...+..+...+..+.++ ++ +.|+..+.. +
T Consensus 313 ~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~---------~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 313 FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQ---------DSLFYSSNEFEEYP 381 (719)
T ss_dssp SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CS---------SEEEEEESCGGGCT
T ss_pred cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eC---------CEEEEEEecCCCCC
Confidence 8899999855555444 3444445555433233 55666666667777777 66 355544413 4
Q ss_pred CeEEEEcCCC
Q 020107 317 RLLRIWMPES 326 (331)
Q Consensus 317 ~~i~iW~~~~ 326 (331)
+.+++|.++.
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 8899998753
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.5e-21 Score=174.31 Aligned_cols=266 Identities=12% Similarity=0.014 Sum_probs=188.3
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
..++.+|+++|++ +.||+++. .+|.++||++++++ ...+...+...+..++|+|+ ++++++
T Consensus 21 ~~~~~~~~~~~DG---~~la~~s~---------~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd-----~~l~~~ 81 (582)
T 3o4h_A 21 AVEKYSLQGVVDG---DKLLVVGF---------SEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG-----RVILVR 81 (582)
T ss_dssp HSCEEEEEEEETT---TEEEEEEE---------ETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS-----EEEEEE
T ss_pred ccchheeecCCCC---CeEEEEEc---------cCCceeEEEEcCCC--cEeeecccccccccccCCCC-----eEEEEe
Confidence 4578899999887 88998872 39999999986654 44443333368999999987 266666
Q ss_pred cC---CccE-EEecCC----Ccc---cCccEEEEEEcCCCCe-EEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 89 DA---DGGL-LRDITG----EKI---SSSMCLCLEWNPSATS-ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 89 ~~---dg~i-iw~~~~----~~~---~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
+. +... +|.+.. ... ........+|+|+++. +++...++.+.+||+.+++...+. . +.. .+++
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~-~~~--~~~~ 156 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA--R-LPG--FGFV 156 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE--E-ESS--CEEE
T ss_pred ccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee--c-CCC--ceEE
Confidence 54 2333 554432 211 1223446688888864 334444455569999987643322 2 222 7899
Q ss_pred eCCCCCcEEEEEcCC----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCCCC
Q 020107 157 FDVHQPHMVYTGSDD----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSISK 230 (331)
Q Consensus 157 ~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~ 230 (331)
|+| +++.+++++.+ +.|++||+.+++.. .+.. |...+..++|+| +++.|+++..++ .|++||+.+++
T Consensus 157 ~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~---~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~- 229 (582)
T 3o4h_A 157 SDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS---GEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGS- 229 (582)
T ss_dssp EEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC---SSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCC-
T ss_pred ECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec---CCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCc-
Confidence 999 88899877766 78999999988744 4444 788899999999 999999888888 89999998753
Q ss_pred CceeeeeecCCceEEEE--------ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccc
Q 020107 231 PVNETSVCLGGGVWRIK--------HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEG 302 (331)
Q Consensus 231 ~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 302 (331)
.. ....+...+..++ |+|++ .+++++..++.+++|.+ ++... .+.+.+.+++|+ ++
T Consensus 230 ~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~----g~~~~---~~~~~v~~~~~s-dg----- 293 (582)
T 3o4h_A 230 VE--DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID----GERVE---APQGNHGRVVLW-RG----- 293 (582)
T ss_dssp EE--ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET----TEEEC---CCSSEEEEEEEE-TT-----
T ss_pred EE--EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE----CCeec---cCCCceEEEEec-CC-----
Confidence 33 3466777777777 99998 77777777888888887 23322 345678899999 77
Q ss_pred cccCcEEEEeecCC---CeEEEEcCCC
Q 020107 303 KRKNSLVATCSFYD---RLLRIWMPES 326 (331)
Q Consensus 303 ~~~~~~l~s~~~~d---~~i~iW~~~~ 326 (331)
+++++++ .+ ..|.+|+..+
T Consensus 294 ----~~l~~~s-~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 ----KLVTSHT-SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ----EEEEEEE-ETTEEEEEEEETTCC
T ss_pred ----EEEEEEc-CCCCCCeEEEEcCCC
Confidence 6888887 56 3477887764
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.8e-21 Score=182.59 Aligned_cols=272 Identities=11% Similarity=-0.011 Sum_probs=198.7
Q ss_pred cceeEeee-cCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC-cEeEEEEcCCCCCCCCeEEEE
Q 020107 11 NADAVEFC-PQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA-GIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 11 ~~~~v~~~-~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+..++|+ |++ ++||+++ ++.|++|++.... ...+ ..|.. .+..++|+ + ++.|+.+
T Consensus 297 ~v~~~~~S~pdG---~~la~~~-----------~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~s-d----g~~l~~~ 354 (1045)
T 1k32_A 297 SKFAEDFSPLDG---DLIAFVS-----------RGQAFIQDVSGTY--VLKV-PEPLRIRYVRRGGD-T----KVAFIHG 354 (1045)
T ss_dssp GGGEEEEEECGG---GCEEEEE-----------TTEEEEECTTSSB--EEEC-SCCSCEEEEEECSS-S----EEEEEEE
T ss_pred ccceeeecCCCC---CEEEEEE-----------cCEEEEEcCCCCc--eEEc-cCCCcceEEeeeEc-C----CCeEEEE
Confidence 57889998 776 8899987 8899999998764 3333 45666 89999999 8 8888888
Q ss_pred cCCccE--EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 89 DADGGL--LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 89 ~~dg~i--iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.++.+ +|++.+... +...+..++|+|+++.|++++.++.|++||+.+++. ......|...+.+++|+| +
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~~Sp-D 431 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFTISD-N 431 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECT-T
T ss_pred ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCccceEECC-C
Confidence 876655 567765432 456789999999999999999999999999998765 444557888899999999 7
Q ss_pred CcEEEEEcCCC----------eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC-
Q 020107 162 PHMVYTGSDDC----------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK- 230 (331)
Q Consensus 162 ~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~- 230 (331)
+++|++++.++ .|++||+.+++ ...+.. |...+..+.|+| +++.|++++.++...+|+......
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~---~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~ 506 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT---ENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFS 506 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC---SSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEE
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC---CCcccCCceEcC-CCCEEEEEecccCCcCcchhccccc
Confidence 78887776544 89999999876 444444 788899999999 999999999877777776432110
Q ss_pred ------------------C----------------------ceeeeeecCCceEEEEECCCCCCeEEE-----------E
Q 020107 231 ------------------P----------------------VNETSVCLGGGVWRIKHHPFIPGLVLA-----------A 259 (331)
Q Consensus 231 ------------------~----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~ 259 (331)
+ ....+..+.+.+..++++|++ ..+++ +
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~ 585 (1045)
T 1k32_A 507 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQ 585 (1045)
T ss_dssp CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHH
T ss_pred cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCccccccc
Confidence 0 001112355778999999985 33443 1
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+.++...+|.+....++ ...+. ..+..++|+|++ +.|++++ .+ .|++||++++.
T Consensus 586 ~~~~~~~l~~~d~~~~~-~~~l~---~~v~~~~~S~DG---------~~l~~~~-~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 586 GAPEKGVLLKYDVKTRK-VTEVK---NNLTDLRLSADR---------KTVMVRK-DD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCCEEEEEEETTTCC-EEEEE---EEEEEEEECTTS---------CEEEEEE-TT-SCEEEEESSCT
T ss_pred ccCCCceEEEEECCCCc-EEEee---cCcceEEECCCC---------CEEEEEc-CC-cEEEEeCccCc
Confidence 22233344444333233 23333 568899999999 6888887 45 89999998765
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.3e-21 Score=182.98 Aligned_cols=269 Identities=12% Similarity=0.065 Sum_probs=200.9
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.+.+.++.|++. .+++++. .++.+.||.++........+ ..|. .+..++|+|+ ++.|+.+
T Consensus 203 ~~~v~~~~~s~d----~l~~~~~----------~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD----G~~la~~ 262 (1045)
T 1k32_A 203 STHVSSPVIVGH----RIYFITD----------IDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD----GRRILFS 262 (1045)
T ss_dssp SSCCEEEEEETT----EEEEEEC----------TTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES----SSCEEEE
T ss_pred CCcccceEEeCC----EEEEEEe----------ccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC----CCEEEEE
Confidence 456667777654 4555655 68899999876533234433 3343 4677899999 8888887
Q ss_pred cCCccE-EEecCCCcc----------------cCccEEEEEEc-CCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107 89 DADGGL-LRDITGEKI----------------SSSMCLCLEWN-PSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF 150 (331)
Q Consensus 89 ~~dg~i-iw~~~~~~~----------------~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 150 (331)
. ++.+ +|++..... +...+.+++|+ |+|+.|++++ ++.|.+|++..++. ..+..|..
T Consensus 263 ~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~---~~~~~~~~ 337 (1045)
T 1k32_A 263 K-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV---LKVPEPLR 337 (1045)
T ss_dssp E-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE---EECSCCSC
T ss_pred e-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce---EEccCCCc
Confidence 4 7777 888743322 12257899999 9999999887 78999999987653 33455666
Q ss_pred -eeEEEeeCCCCCcEEEEEcCCCeEE-EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 151 -ELWATSFDVHQPHMVYTGSDDCKFS-GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 151 -~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.+..++|+ ++..++.++.+..+. +||+.+++... +.. |...+..++|+| ++++|++++.++.|++||+.++
T Consensus 338 ~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~---~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 338 IRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-FEE---NLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp EEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-CCC---CCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred ceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-ecC---CccceeeeEECC-CCCEEEEECCCCeEEEEECCCC
Confidence 89999999 667788888788888 99998765332 323 788899999999 9999999999999999999875
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEEecC----------cEEEEEEcCcccceeEEeecCCcceeeeeecCCCC
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN----------GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
+. ......|.+.+..++|+|++ ..+++++.++ .+.+|++.. ++ ...+..|...+..++|+|++
T Consensus 411 -~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~~~l~~~~~~~~~~~~spdG- 483 (1045)
T 1k32_A 411 -KP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-IFAATTENSHDYAPAFDADS- 483 (1045)
T ss_dssp -CE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-EEECSCSSSBEEEEEECTTS-
T ss_pred -ce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCC--Cc-EEEeeCCCcccCCceEcCCC-
Confidence 32 33235788899999999997 5555555543 667777654 33 66777888889999999999
Q ss_pred cccccccCcEEEEeecCCCeEEEEcCC
Q 020107 299 SLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 299 ~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
++|++++ .++...+|+..
T Consensus 484 --------~~l~~~s-~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 --------KNLYYLS-YRSLDPSPDRV 501 (1045)
T ss_dssp --------CEEEEEE-SCCCCCEECSS
T ss_pred --------CEEEEEe-cccCCcCcchh
Confidence 6888888 88888888754
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=8.3e-20 Score=152.52 Aligned_cols=251 Identities=11% Similarity=0.104 Sum_probs=164.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+..++|+|.+ ++++++.. ..++.|++|++..+..........+...+..++|+|+ +++|++++
T Consensus 40 ~~p~~~a~spdg---~l~~~~~~--------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd----g~~l~~~~ 104 (347)
T 3hfq_A 40 QNPTYLALSAKD---CLYSVDKE--------DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA----RQLVYSAN 104 (347)
T ss_dssp SCCCCEEECTTC---EEEEEEEE--------TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT----TTEEEEEE
T ss_pred CCcceEEEccCC---eEEEEEec--------CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC----CCEEEEEe
Confidence 456667777765 64444430 0268999999976542222222446677899999999 88888777
Q ss_pred -CCccE-EEecCC-Ccc-------c----------CccEEEEEEcCCCCeEEEEecCCeEEEEEcc-ccceeeeeeeecc
Q 020107 90 -ADGGL-LRDITG-EKI-------S----------SSMCLCLEWNPSATSITVGLSDGSVSIVSVV-ESQLEVLQQWKAH 148 (331)
Q Consensus 90 -~dg~i-iw~~~~-~~~-------~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~ 148 (331)
.++.+ +|++.. +.. . ...+.+++|+|+++.+++...++.|.+|++. +++......+..+
T Consensus 105 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 105 YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence 67778 999852 111 0 1237789999999966666668999999998 4544333333322
Q ss_pred -cceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccC--CCce--eeeecccC---CCcceEEEEEecCCCCEE-EEEecCC
Q 020107 149 -EFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRE--SPFK--LAFQNSKI---HKMGVCCIASIPSDSNTL-LTGSYDE 218 (331)
Q Consensus 149 -~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~l-~~~~~d~ 218 (331)
...+..++|+| +++ ++++...++.|.+|++.. ++.. ..+...+. ....+..++|+| ++++| ++...++
T Consensus 185 ~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~ 262 (347)
T 3hfq_A 185 AGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYN 262 (347)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTT
T ss_pred CCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCC
Confidence 23577899999 666 555567889999999985 3321 11221110 114588999999 88877 5555689
Q ss_pred eEEEEEecCCCC-CceeeeeecCCceEEEEECCCCCCeEEEEEe-cCcEEEEEEcCccccee
Q 020107 219 YLRVWDVRSISK-PVNETSVCLGGGVWRIKHHPFIPGLVLAACM-HNGFAVVKVGGEKAEVL 278 (331)
Q Consensus 219 ~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 278 (331)
.|.+||+..... ........+...+..++|+|++ ..+++++. ++.+.+|++...++++.
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999974211 1111123445678999999997 45555554 47788998866544443
No 152
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.89 E-value=8.5e-20 Score=153.54 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=180.1
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC-
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT- 99 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~- 99 (331)
..|.+|+|. .++.|.+|+++.....+..+... ....+..++|+|+ +++|++++.+ .+ +|++.
T Consensus 3 ~~~~vg~~~--------~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd----g~~l~~~~~~-~v~~~~~~~ 69 (365)
T 1jof_A 3 HHLMIGTWT--------PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE----RKNIYGAAMK-KWSSFAVKS 69 (365)
T ss_dssp EEEEEEESS--------SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT----SSEEEEEEBT-EEEEEEEEE
T ss_pred EEEEEEEcc--------CCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC----CCEEEEEccc-eEEEEEECC
Confidence 357778752 23579998876433234433221 2346889999999 8899988888 66 99986
Q ss_pred CCccc-------CccEEEEEEcCCCCe--EEEEe-------------cCCeEEEEEccc-cceee-eeeee-cccceeEE
Q 020107 100 GEKIS-------SSMCLCLEWNPSATS--ITVGL-------------SDGSVSIVSVVE-SQLEV-LQQWK-AHEFELWA 154 (331)
Q Consensus 100 ~~~~~-------~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~-~~~~~-~~~~~v~~ 154 (331)
+++.. ......++|+|+++. ++++. .+|.+.+|++.. ++... +..+. .+...+.+
T Consensus 70 ~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 149 (365)
T 1jof_A 70 PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE
Confidence 44321 122445789999994 45553 689999999974 44321 11111 24567899
Q ss_pred EeeCCCCCcEEEEEc-CCCeEEEEEcc-CCCceeeeecc-cCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCC-C
Q 020107 155 TSFDVHQPHMVYTGS-DDCKFSGWDIR-ESPFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSI-S 229 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~-~ 229 (331)
++|+| ++++++++. .++.|++||+. +++........ +.|...+..++|+| +++++++++. ++.|.+|++... .
T Consensus 150 ~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 150 MVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCC
Confidence 99999 777666654 46899999998 66543221110 12456799999999 9988887775 789999988632 1
Q ss_pred CCc---eeee-e-----ecCC------ceEEEE-ECCCCCCeEEEEE-ecC-----cEEEEEEcCcccceeE---EeecC
Q 020107 230 KPV---NETS-V-----CLGG------GVWRIK-HHPFIPGLVLAAC-MHN-----GFAVVKVGGEKAEVLE---TYAKH 284 (331)
Q Consensus 230 ~~~---~~~~-~-----~~~~------~v~~~~-~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~---~~~~h 284 (331)
+.. .... . .+.. .+..++ |+|++ ..++++. ..+ .+.+|++... ++... ....+
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~ 305 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTP 305 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECS
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecC
Confidence 211 1100 1 1121 588999 99997 4444444 334 7899999742 44332 23345
Q ss_pred CcceeeeeecC---CCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 285 GSLAYGADWQR---GRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 285 ~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
...+..++|+| ++ ++|++++..++.|++|+++..
T Consensus 306 ~~~~~~~a~sp~~~dg---------~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 306 TSGGHSNAVSPCPWSD---------EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCTTCCCEEECTTCT---------TEEEEECSSSCEEEEEEEETT
T ss_pred CCCcccceecCCCcCC---------CEEEEEEcCCCeEEEEEEchh
Confidence 55677899999 67 678877623599999998765
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2.7e-20 Score=155.62 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=173.1
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCC-------ccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEE-ecCCeEE
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADAD-------GGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVG-LSDGSVS 130 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~ 130 (331)
....+..++|+|+ ++.+++++.+ +.+ +|+..+.+.. ...+..++|+|+++.++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ----ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETT----TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCC----CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4467889999999 8888877744 456 9998876542 3456789999999976555 4489999
Q ss_pred EEEccccceeeeeeeecccc---------eeEEEeeCCCCCcEEEEEc--CCCeEEEEEccCCCceeeeecccCCCcceE
Q 020107 131 IVSVVESQLEVLQQWKAHEF---------ELWATSFDVHQPHMVYTGS--DDCKFSGWDIRESPFKLAFQNSKIHKMGVC 199 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 199 (331)
+||+.+++. +..+..+.. .+.+++|+| +++.+++++ .++.|.+||+.+++....+.. +...+.
T Consensus 115 ~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~ 188 (353)
T 3vgz_A 115 AIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---TGKMST 188 (353)
T ss_dssp EEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECC---CCTTCC
T ss_pred EEeCCCCee--EEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecC---CCCccc
Confidence 999998765 444443321 268899999 656555554 588999999998876666653 455688
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee---ecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCccc
Q 020107 200 CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV---CLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKA 275 (331)
Q Consensus 200 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 275 (331)
+++|+| +++++++++.++.|.+||+.+. +....... .+...+..++|+|++ ..+++++ .++.+.+|++.. +
T Consensus 189 ~~~~s~-dg~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~--~ 263 (353)
T 3vgz_A 189 GLALDS-EGKRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRN--G 263 (353)
T ss_dssp CCEEET-TTTEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTT--C
T ss_pred eEEECC-CCCEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCC--C
Confidence 899999 9999999999999999999875 33333112 245568889999998 4444444 447777787755 4
Q ss_pred ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+.+..+.... ...++|+|++. .++++.. .++.|.+||+.++..
T Consensus 264 ~~~~~~~~~~--~~~~~~s~dg~--------~l~v~~~-~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 264 NILAKVAAPE--SLAVLFNPARN--------EAYVTHR-QAGKVSVIDAKSYKV 306 (353)
T ss_dssp CEEEEEECSS--CCCEEEETTTT--------EEEEEET-TTTEEEEEETTTTEE
T ss_pred cEEEEEEcCC--CceEEECCCCC--------EEEEEEC-CCCeEEEEECCCCeE
Confidence 6666665433 26799999984 3566665 799999999987643
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=2.8e-20 Score=155.25 Aligned_cols=273 Identities=9% Similarity=0.051 Sum_probs=172.1
Q ss_pred EeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeE-EEEcCCcc
Q 020107 15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFL-AQADADGG 93 (331)
Q Consensus 15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l-~~~~~dg~ 93 (331)
+++.+.+ .++++++ .++.|++||+.+.+ ....+.......+..++|+|+ ++.+ ++...++.
T Consensus 5 ~~~~~~~---~~~v~~~----------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~d----g~~~~v~~~~~~~ 66 (349)
T 1jmx_B 5 PALKAGH---EYMIVTN----------YPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPD----NRTAYVLNNHYGD 66 (349)
T ss_dssp CCCCTTC---EEEEEEE----------TTTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTT----SSEEEEEETTTTE
T ss_pred ccccCCC---EEEEEeC----------CCCeEEEEECCCCc-EEEEEecCCCCCCceeEECCC----CCEEEEEeCCCCc
Confidence 3444443 7888887 69999999998875 333332222225789999999 7755 55667888
Q ss_pred E-EEecCCCccc------------CccEEEEEEcCCCCeEEEEecC------------CeEEEEEcccccee-eeeeeec
Q 020107 94 L-LRDITGEKIS------------SSMCLCLEWNPSATSITVGLSD------------GSVSIVSVVESQLE-VLQQWKA 147 (331)
Q Consensus 94 i-iw~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~-~~~~~~~ 147 (331)
+ +|++.+.+.. ...+..++|+|+++++++++.+ +.|.+||+.+++.. .+..+.
T Consensus 67 i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~- 145 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP- 145 (349)
T ss_dssp EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred EEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence 8 9998876531 1126789999999999998865 89999999885432 223333
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-C-C---------------C----cceEEEEEecC
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-I-H---------------K----MGVCCIASIPS 206 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~-~---------------~----~~v~~~~~~~~ 206 (331)
+...+.+++|+| +++ +++++ +.|.+||+.+++....+.... . + . .....+++++
T Consensus 146 ~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (349)
T 1jmx_B 146 MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK- 220 (349)
T ss_dssp CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC-
Confidence 344688999999 666 55554 349999999887655554310 0 0 0 0234566654
Q ss_pred CCCEEEE-EecCCeEEEEEecCCCCCceeeeeecCCceEEEEECC-CCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 207 DSNTLLT-GSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 207 ~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
++..... ......+..+|..+.+..... ...+...+..++|+| ++ ..++++ ++.+.+|++.. ++.+..+..
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~--~~~~~~~~~- 293 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKTGKTHTQE-FADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQ--RKLIKAANL- 293 (349)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEE-EEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTT--TEEEEEEEC-
T ss_pred CCcCCccccccceeEEEEeccCCcEEecc-cccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECcc--CeEEEEEcC-
Confidence 3211100 000111222444432211111 223556788999999 86 455554 77888888765 455555553
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...+.+++|+|++ ++|++++ .++.|++||++++.
T Consensus 294 ~~~~~~~~~s~dg---------~~l~~~~-~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 294 DHTYYCVAFDKKG---------DKLYLGG-TFNDLAVFNPDTLE 327 (349)
T ss_dssp SSCCCEEEECSSS---------SCEEEES-BSSEEEEEETTTTE
T ss_pred CCCccceEECCCC---------CEEEEec-CCCeEEEEeccccc
Confidence 3457899999998 5666677 79999999998764
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.3e-20 Score=172.63 Aligned_cols=268 Identities=10% Similarity=0.031 Sum_probs=176.2
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE--eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY--RMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+.+++|+|++ ++||+++..... ...+.++.+++||+.+++ ...+. ..|...+..++|||+ ++.|+.++
T Consensus 63 v~~~~~SpDg---~~l~~~~~~~~~-~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~SPd----G~~la~~~ 132 (723)
T 1xfd_A 63 AIRYEISPDR---EYALFSYNVEPI-YQHSYTGYYVLSKIPHGD--PQSLDPPEVSNAKLQYAGWGPK----GQQLIFIF 132 (723)
T ss_dssp CSEEEECTTS---SEEEEEESCCCC-SSSCCCSEEEEEESSSCC--CEECCCTTCCSCCCSBCCBCSS----TTCEEEEE
T ss_pred cceEEECCCC---CEEEEEecCccc-eeecceeeEEEEECCCCc--eEeccCCccccccccccEECCC----CCEEEEEE
Confidence 6788888877 889988721000 000124889999998875 22221 234445899999999 88999888
Q ss_pred CCccE-EEecCCCccc------Cc------------------cEEEEEEcCCCCeEEEEecCC-----------------
Q 020107 90 ADGGL-LRDITGEKIS------SS------------------MCLCLEWNPSATSITVGLSDG----------------- 127 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~~------~~------------------~v~~~~~~~~~~~l~~~~~dg----------------- 127 (331)
. +.+ +|++.+++.. .. .+.+++|+|||+.|++++.++
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 211 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence 6 566 9998775431 12 226899999999999887543
Q ss_pred -----------------eEEEEEccccceeeeeeeec------ccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEcc
Q 020107 128 -----------------SVSIVSVVESQLEVLQQWKA------HEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIR 180 (331)
Q Consensus 128 -----------------~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~ 180 (331)
.|++||+.+++. ...+.. +...+..++|+| +++++++... +..|++||+.
T Consensus 212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 212 TVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETT
T ss_pred cceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCC
Confidence 799999987753 233333 366789999999 7777766543 3579999999
Q ss_pred CCCceeeeecccCCCcce----EEEEEecCCCCEEEE--EecCC------eEEEEEecCCCCC--ceeeeeecCCceEE-
Q 020107 181 ESPFKLAFQNSKIHKMGV----CCIASIPSDSNTLLT--GSYDE------YLRVWDVRSISKP--VNETSVCLGGGVWR- 245 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~--~~~d~------~i~iwd~~~~~~~--~~~~~~~~~~~v~~- 245 (331)
+++....+.. .+...+ ..+.|+| +++.|+. +..++ .|.+||....... ... +......+..
T Consensus 289 ~g~~~~~~~~--~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-l~~~~~~~~~~ 364 (723)
T 1xfd_A 289 TGVCTKKHED--ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS-ITSGDWDVTKI 364 (723)
T ss_dssp TCCEEEEEEE--ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB-SCCSSSCEEEE
T ss_pred CCcceEEEEe--ccCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE-eecCCeEEEee
Confidence 8876555433 133333 3789999 8886664 44666 4666663232221 222 1233344554
Q ss_pred EEECCCCCCeEEEEEec---CcEEEEEEcCcccceeEEeec---CCcceeeeeecCCCC
Q 020107 246 IKHHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLETYAK---HGSLAYGADWQRGRS 298 (331)
Q Consensus 246 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~ 298 (331)
++|+|++ ..++.++.+ +.+++|.+..........+.. |...+..++|+|++.
T Consensus 365 ~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 365 LAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp EEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred eEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 6999998 555555444 567899987543223333443 667789999999984
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=8e-19 Score=147.39 Aligned_cols=267 Identities=11% Similarity=0.074 Sum_probs=170.6
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee--ecCcEeEEEEcCCCCCCCCeEEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM--DTAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
..+..++|+|.+ ++|++++.. ...++.|.+|+++.....+..+... +......+++ + +++|++
T Consensus 50 ~~p~~l~~spdg---~~l~~~~~~------~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d----g~~l~~ 114 (361)
T 3scy_A 50 ANPSYLIPSADG---KFVYSVNEF------SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N----GKNIVT 114 (361)
T ss_dssp SCCCSEEECTTS---SEEEEEECC------SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C----SSEEEE
T ss_pred CCCceEEECCCC---CEEEEEEcc------CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C----CCEEEE
Confidence 345567777766 788888721 0024899999998742234433332 3445777777 5 666666
Q ss_pred Ec-CCccE-EEecCCCccc--------------------CccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc------
Q 020107 88 AD-ADGGL-LRDITGEKIS--------------------SSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ------ 138 (331)
Q Consensus 88 ~~-~dg~i-iw~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~------ 138 (331)
++ .++.+ +|++...... ...+.+++|+|+++++++++. ++.|.+|++....
T Consensus 115 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 115 ANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp EETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred EECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 65 57777 9998643211 123477999999997766554 8999999987543
Q ss_pred -eeee----eeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCce--eeeecccCCCcceEEEEEecCCCCE
Q 020107 139 -LEVL----QQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNT 210 (331)
Q Consensus 139 -~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~ 210 (331)
+... ............++|+| +++++++++ .++.|.+||+.+++.. ..+.....+...+..++|+| ++++
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~ 272 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKY 272 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSE
T ss_pred ceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCE
Confidence 2111 11122345678999999 667665555 7899999999876532 22222233445678999999 9998
Q ss_pred EEEEecC--CeEEEEEecCCCCCcee-eeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEee-cCC
Q 020107 211 LLTGSYD--EYLRVWDVRSISKPVNE-TSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYA-KHG 285 (331)
Q Consensus 211 l~~~~~d--~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~ 285 (331)
|+++..+ +.|.+|++......+.. ........+..++|+|++ ..+++++ .++.+.+|.+...++++..... .+.
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~ 351 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV 351 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence 8776654 89999999732122111 112225578899999997 4555555 5677888888765455443321 244
Q ss_pred cceeeeeec
Q 020107 286 SLAYGADWQ 294 (331)
Q Consensus 286 ~~v~~~~~~ 294 (331)
..+.++.|.
T Consensus 352 ~~p~~v~~~ 360 (361)
T 3scy_A 352 DKPVCLKFV 360 (361)
T ss_dssp SSEEEEEEE
T ss_pred CCCeEEEEc
Confidence 567788775
No 157
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=5.4e-20 Score=152.56 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=162.7
Q ss_pred CCeEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeE
Q 020107 82 GPFLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELW 153 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~ 153 (331)
...+++.+.++.+ +|++.+++. +...+ .++|+|+++.+++++. ++.|.+||+.+++. ....+..+..+..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMA 87 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCcc
Confidence 4567888888888 999887654 23445 9999999997776666 89999999988764 1444555555555
Q ss_pred EEeeCCCCCcEEEEEcCCC---eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE-EecCCe-EEEEEecCC
Q 020107 154 ATSFDVHQPHMVYTGSDDC---KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT-GSYDEY-LRVWDVRSI 228 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~-i~iwd~~~~ 228 (331)
+++|+| ++++++++..++ .|.+||+.+++....+.. ...+.+++|+| +++++++ ...++. |.+|++...
T Consensus 88 ~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 88 DVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTT
T ss_pred ceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECC-CCCEEEEEecCCCceEEEEEECCC
Confidence 599999 778777655553 899999998876665553 45579999999 8775544 455588 999999864
Q ss_pred CCCcee--eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccce---eEEeecCCcceeeeeecCCCCccccc
Q 020107 229 SKPVNE--TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEV---LETYAKHGSLAYGADWQRGRSSLEGK 303 (331)
Q Consensus 229 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~ 303 (331)
...... ........+..++|+|+++.++++...++.+.+|++.. ++. +..+.. ...+..++|+|++.
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~--~~~~~~~~~~~~-~~~~~~~~~spdg~----- 233 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN--PENITLLNAVGT-NNLPGTIVVSRDGS----- 233 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--TTSCEEEEEEEC-SSCCCCEEECTTSS-----
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--CcccceeeeccC-CCCCceEEECCCCC-----
Confidence 322111 11244566899999999733444444567788898875 344 666654 46678999999993
Q ss_pred ccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 304 RKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 304 ~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.++++.. .++.|.+||++++.+
T Consensus 234 ---~l~v~~~-~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 234 ---TVYVLTE-STVDVFNFNQLSGTL 255 (331)
T ss_dssp ---EEEEECS-SEEEEEEEETTTTEE
T ss_pred ---EEEEEEc-CCCEEEEEECCCCce
Confidence 2445555 688999999988754
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.3e-19 Score=148.90 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=168.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee----cCcEeEEEEcCCCCCCCCeEE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD----TAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~ 86 (331)
.+..++|+|.+ ++++++.. .++.|.+||+.+.+ .+..+...+ ...+..++|+|+ ++.|+
T Consensus 35 ~~~~~~~s~dg---~~l~v~~~---------~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~ 97 (337)
T 1pby_B 35 TPMVPMVAPGG---RIAYATVN---------KSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAALSPD----GKTLA 97 (337)
T ss_dssp CCCCEEECTTS---SEEEEEET---------TTTEEEEEETTTCC-EEEEEECCBTTEEEECTTCEEECTT----SSEEE
T ss_pred CccceEEcCCC---CEEEEEeC---------CCCeEEEEECCCCC-eEeeEEcCCcccccccccceEECCC----CCEEE
Confidence 57889998877 55544431 58899999998765 333332222 226788999999 88888
Q ss_pred EEc------------CCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 87 QAD------------ADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 87 ~~~------------~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
+++ .++.+ +|++.+.+. ....+.+++|+|++++|+++ ++.|.+||+.+++. ...+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--~~~~~~~ 173 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--VEDKPIQ 173 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--EEEECST
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--eeeeecc
Confidence 885 46778 999987653 23456788999999998888 68999999988754 4444433
Q ss_pred cceeEEEeeCCCCCcEEEEEcCCC-----------------------eEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 149 EFELWATSFDVHQPHMVYTGSDDC-----------------------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 149 ~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
.. ...+.|+|+...+++++..++ .|.+||+.+++.. .+.. ..+...+.+++|+|
T Consensus 174 ~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNP 250 (337)
T ss_dssp TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECT
T ss_pred cc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECC
Confidence 20 113378884333333333333 4689999988754 3333 33667889999999
Q ss_pred CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
++++++++ ++.|.+||+.+. +.+.. ......+.+++|+|++ ..+++++.++.+.+|++.. ++.+..+..+
T Consensus 251 -dg~~l~~~--~~~v~~~d~~~~-~~~~~--~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~--~~~~~~~~~~ 320 (337)
T 1pby_B 251 -AKTRAFGA--YNVLESFDLEKN-ASIKR--VPLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAET--LEKKGQVDLP 320 (337)
T ss_dssp -TSSEEEEE--ESEEEEEETTTT-EEEEE--EECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTT--CCEEEEEECG
T ss_pred -CCCEEEEe--CCeEEEEECCCC-cCcce--ecCCCceeeEEECCCC-CEEEEEcCCCcEEEEECcC--CcEEEEEEcC
Confidence 99988888 799999999874 44443 3455678999999997 5566667778888888766 4666666544
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6e-19 Score=161.44 Aligned_cols=287 Identities=10% Similarity=0.038 Sum_probs=185.8
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccce--EEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNL--ELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
+.+++|+|++ ++||+++..... -..+.++.|++||+.+++ .+ ..+ ...+..++|||+ ++.|+.+.
T Consensus 62 ~~~~~~SpDg---~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~-~~~~~~l----~~~~~~~~~SPD----G~~la~~~ 128 (719)
T 1z68_A 62 ASNYGLSPDR---QFVYLESDYSKL-WRYSYTATYYIYDLSNGE-FVRGNEL----PRPIQYLCWSPV----GSKLAYVY 128 (719)
T ss_dssp CSEEEECTTS---SEEEEEEEEEEC-SSSCEEEEEEEEETTTTE-ECCSSCC----CSSBCCEEECSS----TTCEEEEE
T ss_pred eeeEEECCCC---CeEEEEecCcee-EEeecceEEEEEECCCCc-cccceec----CcccccceECCC----CCEEEEEE
Confidence 6788898877 888888711000 000015899999998875 10 222 256899999999 88999886
Q ss_pred CCccE-EEecCCCccc-------CccE-----------------EEEEEcCCCCeEEEEecCC-----------------
Q 020107 90 ADGGL-LRDITGEKIS-------SSMC-----------------LCLEWNPSATSITVGLSDG----------------- 127 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~~-------~~~v-----------------~~~~~~~~~~~l~~~~~dg----------------- 127 (331)
++.+ +|++.+++.. ...+ .+++|+|||+.|++++.|.
T Consensus 129 -~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 129 -QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp -TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred -CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 6677 9998765431 1112 4899999999999987652
Q ss_pred -----------------eEEEEEcccccee---ee---eeeecccceeEEEeeCCCCCcEEEEEcCC----CeEEEEE--
Q 020107 128 -----------------SVSIVSVVESQLE---VL---QQWKAHEFELWATSFDVHQPHMVYTGSDD----CKFSGWD-- 178 (331)
Q Consensus 128 -----------------~i~i~d~~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d-- 178 (331)
.|++||+.+++.. .+ ..+.+|...+..++|+| ++.++++.... ..|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEEC
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEccc
Confidence 7889999876531 11 12345788899999999 57777664322 3588899
Q ss_pred --ccCCCceeeee-cccCCCcceE-----EEEEecCCCCEEEE--EecCC--eEEEEEecCCCCCceeeeeecCCceEEE
Q 020107 179 --IRESPFKLAFQ-NSKIHKMGVC-----CIASIPSDSNTLLT--GSYDE--YLRVWDVRSISKPVNETSVCLGGGVWRI 246 (331)
Q Consensus 179 --~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 246 (331)
+.+++....+. ....|...+. .+.|+| +++.|+. ...++ .|.+||+... . ... +..+...+..+
T Consensus 287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~-~-~~~-lt~~~~~v~~~ 362 (719)
T 1z68_A 287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVE-N-AIQ-ITSGKWEAINI 362 (719)
T ss_dssp SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCST-T-CEE-CSCSSSCEEEE
T ss_pred CCCCCCceEEEEecccccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCC-c-eEe-cccCceEEEEE
Confidence 77766554442 0012566665 789999 8875544 44555 4666676653 2 222 34455567777
Q ss_pred EECCCCCCeEEEEEec-----CcEEEEEEcCcccc-eeEEee----cCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107 247 KHHPFIPGLVLAACMH-----NGFAVVKVGGEKAE-VLETYA----KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
.++ ++ +.++.++.. +..++|.+....+. ....+. +|...+..+.|+|++. .++++++ .+
T Consensus 363 ~~~-d~-~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~--------~l~~~~s-~~ 431 (719)
T 1z68_A 363 FRV-TQ-DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK--------YYALVCY-GP 431 (719)
T ss_dssp EEE-CS-SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS--------SEEEEEC-CB
T ss_pred EEE-eC-CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC--------EEEEEcC-CC
Confidence 777 65 555555554 56778888653232 123333 2667788999999984 4444554 33
Q ss_pred --CeEEEEcCCCcc
Q 020107 317 --RLLRIWMPESDC 328 (331)
Q Consensus 317 --~~i~iW~~~~~~ 328 (331)
..+.+|+++++.
T Consensus 432 ~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 432 GIPISTLHDGRTDQ 445 (719)
T ss_dssp SSCEEEEECSSSCC
T ss_pred CCCeEEEEECCCCC
Confidence 578899987764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=3.1e-19 Score=159.38 Aligned_cols=228 Identities=10% Similarity=-0.028 Sum_probs=159.8
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcC-CccE-EEecCCCcc-----cC-ccEEEEEEcCCCCeEEEEec---CCeEEEEE
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADA-DGGL-LRDITGEKI-----SS-SMCLCLEWNPSATSITVGLS---DGSVSIVS 133 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~i-iw~~~~~~~-----~~-~~v~~~~~~~~~~~l~~~~~---dg~i~i~d 133 (331)
+..+|++++|+|+ ++.||.++. ||.+ ||++.+++. +. ..+..++|+|+ +.+++++. +....+|.
T Consensus 20 ~~~~~~~~~~~~D----G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVD----GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEET----TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCC----CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999 999998887 9999 999866543 23 57889999999 77777664 45556665
Q ss_pred ccc--cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 134 VVE--SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
+.. .... . .+... ..+...+|+|+....+++...++.+.+||+.+++....... .. .+++|+| ++++|
T Consensus 95 ~~~~~~g~~-~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~----~~--~~~~~sp-DG~~l 164 (582)
T 3o4h_A 95 VNTSRPGEE-Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL----PG--FGFVSDI-RGDLI 164 (582)
T ss_dssp EETTSTTCC-E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE----SS--CEEEEEE-ETTEE
T ss_pred EeccCCCcc-c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC----CC--ceEEECC-CCCEE
Confidence 543 2111 1 22211 12335577774334444444445555999998865444433 22 7899999 99999
Q ss_pred EEEecC----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC--cEEEEEEcCcccceeEEeecCC
Q 020107 212 LTGSYD----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN--GFAVVKVGGEKAEVLETYAKHG 285 (331)
Q Consensus 212 ~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~ 285 (331)
++++.+ +.|++||+.++ +.. . +..+.+.+..++|+|++ ..++++..++ .+.+|++.. ++.. .+.+|.
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g-~~~-~-l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~--~~~~-~~~~~~ 237 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSG-GLR-V-FDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRD--GSVE-DLELPS 237 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTC-CCE-E-ECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTT--CCEE-ECCCSC
T ss_pred EEEEEcCCCCeEEEEEcCCCC-Cce-E-eecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCC--CcEE-EccCCC
Confidence 988877 78999999875 333 2 46788889999999997 4555444455 344444433 4544 677888
Q ss_pred cceeeee--------ecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 286 SLAYGAD--------WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 286 ~~v~~~~--------~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
..+..++ |+|++ .++++++ .|+.+++|++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg---------~~~~~~~-~~g~~~l~~~ 274 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDG---------RLAVVAR-REGRSAVFID 274 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTS---------CEEEEEE-ETTEEEEEET
T ss_pred cChhhhhhccccceeEcCCC---------cEEEEEE-cCCcEEEEEE
Confidence 8888888 99998 6899998 8999999998
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.6e-18 Score=145.57 Aligned_cols=273 Identities=10% Similarity=-0.027 Sum_probs=169.3
Q ss_pred EeeecCCCCCcEEEEEeecccCCCCCCCCC--cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCc
Q 020107 15 VEFCPQDSYHHVLAASTYTLQEGDKPSRNG--SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADG 92 (331)
Q Consensus 15 v~~~~~~~~~~~la~g~~~~~~~~~~~~~g--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 92 (331)
.+|+|++ ++||.++. .+| .|.+||+.+.+ ...+...+...+..+.|+|+ ++.|+.++.++
T Consensus 41 ~~~SpDg---~~l~~~~~---------~~g~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~spd----g~~l~~~~~~~ 102 (388)
T 3pe7_A 41 KCFTRDG---SKLLFGGA---------FDGPWNYYLLDLNTQV--ATQLTEGRGDNTFGGFLSPD----DDALFYVKDGR 102 (388)
T ss_dssp CCBCTTS---CEEEEEEC---------TTSSCEEEEEETTTCE--EEECCCSSCBCSSSCEECTT----SSEEEEEETTT
T ss_pred ccCCCCC---CEEEEEEc---------CCCCceEEEEeCCCCc--eEEeeeCCCCCccceEEcCC----CCEEEEEeCCC
Confidence 4566665 88888871 255 47778887764 45554555555667889999 99999999888
Q ss_pred cE-EEecCCCcc------cCccEEEE--EEcCCCCeEEEE----------------------ecCCeEEEEEccccceee
Q 020107 93 GL-LRDITGEKI------SSSMCLCL--EWNPSATSITVG----------------------LSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 93 ~i-iw~~~~~~~------~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~ 141 (331)
.+ +|++.+++. +...+... .++|+++.++.. ..+..|.+||+.+++.
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-- 180 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-- 180 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--
Confidence 88 999988654 22223233 348899887743 2347899999998764
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecccCCC--cceEEEEEecCCCCEEEE
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNSKIHK--MGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~ 213 (331)
..+..+...+..++|+|.+++.|+....+ ..|.++|+..+... .+.. +. ..+..+.|+| +++.|+.
T Consensus 181 -~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~---~~~~~~~~~~~~sp-dg~~l~~ 254 (388)
T 3pe7_A 181 -TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT---HAEGESCTHEFWVP-DGSALVY 254 (388)
T ss_dssp -EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC---CCTTEEEEEEEECT-TSSCEEE
T ss_pred -EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee---CCCCcccccceECC-CCCEEEE
Confidence 23334556788999998345666555543 37888887765433 3322 23 3578899999 8887755
Q ss_pred Eec-CC----eEEEEEecCCCCCceeeeeecCCc---eEEEEECCCCCCeEEEE--------EecCcEEEEEEcCcccce
Q 020107 214 GSY-DE----YLRVWDVRSISKPVNETSVCLGGG---VWRIKHHPFIPGLVLAA--------CMHNGFAVVKVGGEKAEV 277 (331)
Q Consensus 214 ~~~-d~----~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 277 (331)
.+. ++ .|.+||+.+++.........+... ...++|+|++..++++. ..+..+.+|++.. ..
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~---~~ 331 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN---GT 331 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT---TE
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC---Cc
Confidence 443 22 399999988642221111110000 11237899975444433 2334555666544 33
Q ss_pred eEEeecCCc-----------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 278 LETYAKHGS-----------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 278 ~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+..+..|.. .+..++|+|++ +.|+..+..++...||.++
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg---------~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 332 QHRVARHDTSWKVFEGDRQVTHPHPSFTPDD---------KQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEEECCCCCCCBTTBSSTTCCCCEECTTS---------SEEEEEECTTSSCEEEEEE
T ss_pred eEEeccccCcccccccccccCCCCccCCCCC---------CEEEEEecCCCceeEEEEE
Confidence 445555555 57889999999 4565554267777776543
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=6.8e-18 Score=154.75 Aligned_cols=258 Identities=11% Similarity=0.043 Sum_probs=167.4
Q ss_pred cCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-----EeEEEEcCCCCCCCC
Q 020107 9 DGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-----IFDIKWSPVGGNAGP 83 (331)
Q Consensus 9 ~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~ 83 (331)
..+...++|+|++ ++|+++ +|.|++|++.+++ ...+...|... ..++.|||+ ++
T Consensus 16 ~~~~~~~~w~~dg---~~~~~~------------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spd----g~ 74 (740)
T 4a5s_A 16 RLKLYSLRWISDH---EYLYKQ------------ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD----GQ 74 (740)
T ss_dssp CCCCCCEEECSSS---EEEEEE------------TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTT----SS
T ss_pred cccccccEECCCC---cEEEEc------------CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCC----CC
Confidence 3456789999887 777774 7899999999886 34455666532 245889999 99
Q ss_pred eEEEEcCCc---------cE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc
Q 020107 84 FLAQADADG---------GL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH 148 (331)
Q Consensus 84 ~l~~~~~dg---------~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 148 (331)
+|+.++.+. .+ +|++.+++. +...+...+|+|||+.||.+ .++.|++|++.+++...+ +..++
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l-t~~g~ 152 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI-TWTGK 152 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC-CSCCB
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE-cCCCC
Confidence 999988763 34 999988764 35678999999999999888 468999999987754222 12222
Q ss_pred ccee-----------------EEEeeCCCCCcEEEEEcCCC------------------------------------eEE
Q 020107 149 EFEL-----------------WATSFDVHQPHMVYTGSDDC------------------------------------KFS 175 (331)
Q Consensus 149 ~~~v-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~ 175 (331)
...+ ..+.|+| +++.|+..+.|. .|+
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 2212 3589999 778777764221 578
Q ss_pred EEEccC---CCc--eeeeecc---cCCCcceEEEEEecCCCCEEEEEec----CCeEEEEEecCCC----C--Cceeeee
Q 020107 176 GWDIRE---SPF--KLAFQNS---KIHKMGVCCIASIPSDSNTLLTGSY----DEYLRVWDVRSIS----K--PVNETSV 237 (331)
Q Consensus 176 i~d~~~---~~~--~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~----~--~~~~~~~ 237 (331)
+||+.+ ++. ...+... .+|...+..++|+| +++.++.... +..|.+||+.+++ . .......
T Consensus 232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 899988 632 2222210 02677899999999 8886665533 3479999999864 1 1111114
Q ss_pred ecCCceE-----EEEECCCCCCeEEEEEec-CcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107 238 CLGGGVW-----RIKHHPFIPGLVLAACMH-NGFAVVKVGGEKAEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 238 ~~~~~v~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 292 (331)
.+.+.|. ...|+|++..+++..+.. +...++.+... +.....+....-.|..+.
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~-~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSSCEESCCSSSCEEEEE
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC-CCceEecccCCEEEEEEE
Confidence 4555554 789999984444244433 33444444433 333344444444555543
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=5e-17 Score=136.64 Aligned_cols=240 Identities=9% Similarity=-0.010 Sum_probs=158.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEecc-CcccceEEeEeee-cCcEeEEEEcCCCCCCCCe--EE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVN-AEEKNLELLYRMD-TAGIFDIKWSPVGGNAGPF--LA 86 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~--l~ 86 (331)
.+..++++|.+ ++|++++ .+ .|.+|++. +++ +....... .+.+..++|+|+ +++ ++
T Consensus 41 ~~~~~a~spdg---~~l~~~~----------~~-~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~spd----g~~l~~~ 100 (365)
T 1jof_A 41 PISWMTFDHER---KNIYGAA----------MK-KWSSFAVKSPTE--IVHEASHPIGGHPRANDADTN----TRAIFLL 100 (365)
T ss_dssp CCSEEEECTTS---SEEEEEE----------BT-EEEEEEEEETTE--EEEEEEEECCSSGGGGCTTSC----CEEEEEE
T ss_pred CCcEEEECCCC---CEEEEEc----------cc-eEEEEEECCCCC--EEEeeEeecCCCCccEEECCC----CCEEEEE
Confidence 45667777766 7888887 34 89999997 443 32222211 133667899999 774 45
Q ss_pred EEc-------------CCccE-EEecCC-Ccc----------cCccEEEEEEcCCCCeEEEEec-CCeEEEEEcc-ccce
Q 020107 87 QAD-------------ADGGL-LRDITG-EKI----------SSSMCLCLEWNPSATSITVGLS-DGSVSIVSVV-ESQL 139 (331)
Q Consensus 87 ~~~-------------~dg~i-iw~~~~-~~~----------~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~ 139 (331)
+++ .+|.+ +|++.. ++. +...+.+++|+|+|++++++.. ++.|++|++. +++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 554 57888 998863 321 2356889999999998887764 7899999998 6665
Q ss_pred eeeeeee--cccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEcc--CCCcee---eeeccc----CCCc------ceEEE
Q 020107 140 EVLQQWK--AHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIR--ESPFKL---AFQNSK----IHKM------GVCCI 201 (331)
Q Consensus 140 ~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~---~~~~~~----~~~~------~v~~~ 201 (331)
..+..+. .+...+..++|+| +++++++++ .++.|.+|++. +++... .+...+ +|.. .+..+
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 259 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE
Confidence 4444443 2356689999999 777776655 57899999876 344321 122211 1222 58899
Q ss_pred E-EecCCCCEEEEEecC-C-----eEEEEEecCCCCCcee--eeeecCCceEEEEECC---CCCCeEEEEEe-cCcEEEE
Q 020107 202 A-SIPSDSNTLLTGSYD-E-----YLRVWDVRSISKPVNE--TSVCLGGGVWRIKHHP---FIPGLVLAACM-HNGFAVV 268 (331)
Q Consensus 202 ~-~~~~~~~~l~~~~~d-~-----~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~---~~~~~~~~~~~-~~~~~~~ 268 (331)
+ |+| ++++|+++..+ + .|.+|++....+.... ....+...+..++|+| ++ ..+++++. ++.+.+|
T Consensus 260 ~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIY 337 (365)
T ss_dssp EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEE
T ss_pred EEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCeEEEE
Confidence 9 999 99888777643 2 8999999732232211 1122455677899999 66 56666655 4788889
Q ss_pred EEcCc
Q 020107 269 KVGGE 273 (331)
Q Consensus 269 ~~~~~ 273 (331)
++...
T Consensus 338 ~~~~~ 342 (365)
T 1jof_A 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEchh
Confidence 88764
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.3e-16 Score=132.03 Aligned_cols=241 Identities=9% Similarity=0.048 Sum_probs=171.8
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCC------------------------ccE-EEecCCCcc-------cCccEEEEEE
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADAD------------------------GGL-LRDITGEKI-------SSSMCLCLEW 113 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~d------------------------g~i-iw~~~~~~~-------~~~~v~~~~~ 113 (331)
-+.+.+|+++|+ ++++++...+ +.+ +|+..+++. +-.....+++
T Consensus 23 l~~v~~va~d~~----G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSK----NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTT----CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred cCCceEEEECCC----CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence 356999999999 8888888877 356 888876543 1246789999
Q ss_pred cCCCCeEEEEecCCeEEEEEccccceeeeeee---------ecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCC
Q 020107 114 NPSATSITVGLSDGSVSIVSVVESQLEVLQQW---------KAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESP 183 (331)
Q Consensus 114 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 183 (331)
+++++.+++...++.|++|+..... ..+..+ ..+......++++|.++.++++.+ .++.|++||. .++
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC
Confidence 9999988888889999999986532 123333 233446889999985677778776 6999999994 455
Q ss_pred ceeeeecc-------cCCCcceEEEEEecCC-CCEEEEEecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCC
Q 020107 184 FKLAFQNS-------KIHKMGVCCIASIPSD-SNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPG 254 (331)
Q Consensus 184 ~~~~~~~~-------~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 254 (331)
....+... +.+-..+..|+++| + +.++++...++.|++||..++ +.+..+. ..+...+..++++| + .
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g-~ 252 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-G-F 252 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-T-E
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-C-E
Confidence 45444321 01223489999999 6 788888888999999999864 3333311 23566789999999 2 3
Q ss_pred eEEEEE-------ecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcC
Q 020107 255 LVLAAC-------MHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMP 324 (331)
Q Consensus 255 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~ 324 (331)
.+.+.+ ....+.+|+... ++.+..+. ++.....+++++|++ .++++.. .++.|++|++
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG---------~lyvad~-~~~~I~~~~~ 320 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDG---------TVYIGDA-HTNTVWKFTL 320 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTS---------EEEEEES-SSCCEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCC---------CEEEEEC-CCCEEEEEeC
Confidence 333322 123566666554 67777763 567788999999998 6888888 8999999998
Q ss_pred CCcc
Q 020107 325 ESDC 328 (331)
Q Consensus 325 ~~~~ 328 (331)
+...
T Consensus 321 ~~~~ 324 (329)
T 3fvz_A 321 TEKM 324 (329)
T ss_dssp EECS
T ss_pred Cccc
Confidence 6543
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=5.7e-16 Score=129.73 Aligned_cols=255 Identities=13% Similarity=0.080 Sum_probs=168.9
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCccc-------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKIS------- 104 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~------- 104 (331)
++.|++||..+.+ .+..+ ..+..+ .++|+|+ ++++++++. ++.+ +|+..+.+..
T Consensus 30 d~~v~v~D~~t~~-~~~~i-~~g~~p--~i~~spd----g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 30 ESRVHVYDYTNGK-FLGMV-PTAFNG--HVQVSND----GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GCEEEEEETTTCC-EEEEE-ECCEEE--EEEECTT----SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred cCeEEEEECCCCe-EEEEe-cCCCCC--ceEECCC----CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 7799999988775 33333 333333 8999999 899988863 4556 9998765432
Q ss_pred -----CccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 105 -----SSMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 105 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
......++++|++++|+++.. +++|.+||+.+++. +.. +.. .. ...+.+.|.....+++.+.||.+.+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~ 177 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLT 177 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEE
Confidence 123457899999999999874 68999999998754 454 432 21 2335667755577888899999999
Q ss_pred EEccC-CCceeeee---cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee------c----CCc
Q 020107 177 WDIRE-SPFKLAFQ---NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC------L----GGG 242 (331)
Q Consensus 177 ~d~~~-~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~----~~~ 242 (331)
|++.. ++...... .......++ .+.+.| ++..++..+.++.|.++|+......+...... . ...
T Consensus 178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEECCCCcEeeeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 99875 43221111 111122222 333466 66677777789999999997542221110000 0 111
Q ss_pred eEEEEECCCCCCeEEEEEe-----------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEE
Q 020107 243 VWRIKHHPFIPGLVLAACM-----------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVAT 311 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 311 (331)
...++|+|++ +.++++.. .+.+.+|++.. .+.+.++..+. +.+++|+|++ ++|++
T Consensus 256 ~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--~~~v~~i~~~~--p~~ia~spdg---------~~l~v 321 (361)
T 2oiz_A 256 YNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--KQRVARIPGRD--ALSMTIDQQR---------NLMLT 321 (361)
T ss_dssp SSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTT--TEEEEEEECTT--CCEEEEETTT---------TEEEE
T ss_pred eeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCC--CcEEEEEecCC--eeEEEECCCC---------CEEEE
Confidence 2237899997 44444433 23566666555 68888888776 9999999999 68888
Q ss_pred eecCCCeEEEEcCCCc
Q 020107 312 CSFYDRLLRIWMPESD 327 (331)
Q Consensus 312 ~~~~d~~i~iW~~~~~ 327 (331)
++ . +.|.+||++++
T Consensus 322 ~n-~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 322 LD-G-GNVNVYDISQP 335 (361)
T ss_dssp EC-S-SCEEEEECSSS
T ss_pred eC-C-CeEEEEECCCC
Confidence 87 6 99999999987
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=4.5e-17 Score=149.37 Aligned_cols=237 Identities=8% Similarity=-0.015 Sum_probs=157.5
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc------C-----ccEEEEEEcCCCCeEEEEecC---------
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS------S-----SMCLCLEWNPSATSITVGLSD--------- 126 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~------~-----~~v~~~~~~~~~~~l~~~~~d--------- 126 (331)
....++|+|+ +++++++ |+.+ +|++.+++.. . .....++|+|||+.|+.++.+
T Consensus 18 ~~~~~~w~~d----g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISD----HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSS----SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCC----CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 4668999999 8888886 8888 9999877641 1 122347899999999998876
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce--------
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV-------- 198 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v-------- 198 (331)
+.+.+||+.+++. ..+..+...+...+|+| +++.|+.+. ++.|++||+.+++..+. .. .++...+
T Consensus 92 ~~~~~~d~~~~~~---~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~l-t~-~g~~~~~~~g~~~~v 164 (740)
T 4a5s_A 92 ASYDIYDLNKRQL---ITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRI-TW-TGKEDIIYNGITDWV 164 (740)
T ss_dssp EEEEEEETTTTEE---CCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEEC-CS-CCBTTTEEESBCCHH
T ss_pred eEEEEEECCCCcE---EEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEE-cC-CCCccceecCccccc
Confidence 5677999998864 33555677899999999 778888775 78999999988764332 21 1122222
Q ss_pred ---------EEEEEecCCCCEEEEEecCC------------------------------------eEEEEEecC---CCC
Q 020107 199 ---------CCIASIPSDSNTLLTGSYDE------------------------------------YLRVWDVRS---ISK 230 (331)
Q Consensus 199 ---------~~~~~~~~~~~~l~~~~~d~------------------------------------~i~iwd~~~---~~~ 230 (331)
..+.|+| |++.|+..+.|. .|++||+.+ ++.
T Consensus 165 ~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 165 YEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred ccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 3589999 999998876432 477788876 421
Q ss_pred -Cceeeee-----ecCCceEEEEECCCCCCeEEEEEecC----cEEEEEEcCcc----cceeEEe--ecCCccee-----
Q 020107 231 -PVNETSV-----CLGGGVWRIKHHPFIPGLVLAACMHN----GFAVVKVGGEK----AEVLETY--AKHGSLAY----- 289 (331)
Q Consensus 231 -~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~--~~h~~~v~----- 289 (331)
....+.. .+...+..++|+|++ ..++.....+ .+.+|++.... ...+..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 1222111 266779999999996 3343333221 36666665532 0011112 34555554
Q ss_pred eeeecCCCCcccccccCcEEE-EeecCC--CeEEEEcCCCcc
Q 020107 290 GADWQRGRSSLEGKRKNSLVA-TCSFYD--RLLRIWMPESDC 328 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~-s~~~~d--~~i~iW~~~~~~ 328 (331)
...|+|++ +.|+ ..+..+ ..|++|+++++.
T Consensus 323 ~p~fspDG---------~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 323 EPHFTLDG---------NSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CCEECTTS---------SEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CceEcCCC---------CEEEEEEEcCCCceEEEEEECCCCc
Confidence 78999999 4555 555133 468888887664
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=3.4e-16 Score=141.93 Aligned_cols=279 Identities=9% Similarity=-0.055 Sum_probs=175.8
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEe---------EEEEc--CCC
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIF---------DIKWS--PVG 78 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~ 78 (331)
..+..+++++.. .+++.+. ...++...||...... ....+ ..|...+. ...|+ |+
T Consensus 24 ~~~~~~~~s~~~---~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD- 89 (662)
T 3azo_A 24 GRPACVGAVGDE---VWWVAPR--------PAEAGRATLVRRRADG-AEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA- 89 (662)
T ss_dssp SCCEEEEEETTE---EEEEEEE--------TTTTTEEEEEEECTTS-CEEES-SCTTCCBCCCGGGTCCCCEEEECCSS-
T ss_pred CccceeEEcCCe---EEEEecC--------cccCCcEEEEEECCCC-Cccee-CCCCccccccccccCCccceeeeecC-
Confidence 356677777543 4555552 0147889999864433 33333 44555555 66666 88
Q ss_pred CCCCCe-EEEEcC-CccE-EEecC--C-Ccc----------cCccEEEEEEcCCCCeEEEEecC----------CeEEEE
Q 020107 79 GNAGPF-LAQADA-DGGL-LRDIT--G-EKI----------SSSMCLCLEWNPSATSITVGLSD----------GSVSIV 132 (331)
Q Consensus 79 ~~~~~~-l~~~~~-dg~i-iw~~~--~-~~~----------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~ 132 (331)
++. |+.++. +..+ ++++. + ... +...+..++|+|||+.|++++.+ ..|++|
T Consensus 90 ---g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 90 ---GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp ---SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred ---CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 777 666654 4445 66655 2 221 23467899999999999998876 589999
Q ss_pred Eccc------cceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEcc-CC---CceeeeecccC
Q 020107 133 SVVE------SQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIR-ES---PFKLAFQNSKI 193 (331)
Q Consensus 133 d~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~ 193 (331)
|+.+ ++. ..+. .+...+..++|+| +++.|+.++.+ ..|++||+. ++ +.......
T Consensus 167 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~--- 239 (662)
T 3azo_A 167 PLDGSAAADRSAV---RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG--- 239 (662)
T ss_dssp ETTSTTTTCGGGS---EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred ECCCCccccCCce---eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---
Confidence 9987 543 3333 4556788899999 77888776644 479999998 46 32222222
Q ss_pred CCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCCCCCceeeeeecCCc--------eEEEEECCCCCCeEEEEEecC
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSISKPVNETSVCLGGG--------VWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~~~ 263 (331)
|...+..+.|+| ++++++++..++ .|.+||+.++ + ...+...+... +..++|+|++ .+++++.. +
T Consensus 240 ~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~-~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~ 314 (662)
T 3azo_A 240 PEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATG-A-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-G 314 (662)
T ss_dssp TTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTC-C-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-S
T ss_pred CCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCC-c-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-C
Confidence 578899999999 888888888888 5555555443 2 22211122111 4678888885 45555555 7
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeee-eecCCCCcccccccCcEEEEeecCCC--eEEEEcCCCcc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGA-DWQRGRSSLEGKRKNSLVATCSFYDR--LLRIWMPESDC 328 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~~d~--~i~iW~~~~~~ 328 (331)
..++|.+... ...+..+..|...+..+ +++.+ .+++++++.+. .|.+|+++++.
T Consensus 315 ~~~l~~~d~~-~~~~~~l~~~~~~~~~~~s~~~~----------~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 315 AAVLGILDPE-SGELVDAAGPWTEWAATLTVSGT----------RAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp SCEEEEEETT-TTEEEECCSSCCEEEEEEEEETT----------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred ccEEEEEECC-CCcEEEecCCCCeEEEEEecCCC----------EEEEEEcCCCCCCEEEEEECCCCc
Confidence 7788877654 23467777787777777 54443 34444331554 45555665553
No 168
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=1.7e-15 Score=138.39 Aligned_cols=242 Identities=9% Similarity=-0.027 Sum_probs=162.0
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCc-----cE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCCe-------
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADG-----GL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDGS------- 128 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~------- 128 (331)
..+..++|||+ +++||.+..++ .+ +|++.+++.. ...+..++|+||++.|+.++.++.
T Consensus 125 ~~~~~~~~SPD----g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 125 VALRGYAFSED----GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEEECTT----SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred EEEEEEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 46889999999 88888765533 56 9999887653 122457899999999999888765
Q ss_pred ---------EEEEEccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcC-----CCeEEEEEccC------CC-ce
Q 020107 129 ---------VSIVSVVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSD-----DCKFSGWDIRE------SP-FK 185 (331)
Q Consensus 129 ---------i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~ 185 (331)
|++|++.+++......+. .+...+..+.|+| ++++|+..+. +..|++||+.+ +. ..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999876532222222 3455578999999 7777766553 57899999986 43 23
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCCCC-CceeeeeecCC--ceEEEEECCCCCCeEEE
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSISK-PVNETSVCLGG--GVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 258 (331)
..+.. +...+.. .|+| ++..|+..+.. +.|.+||+.+... .... +..+.. .+..+.|++++ .++++
T Consensus 280 ~~l~~---~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-~lv~~ 352 (710)
T 2xdw_A 280 VKLID---NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV-LVPEHEKDVLEWVACVRSN-FLVLC 352 (710)
T ss_dssp EEEEC---SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE-EECCCSSCEEEEEEEETTT-EEEEE
T ss_pred EEeeC---CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCccccee-ccCCCCCCeEEEEEEEcCC-EEEEE
Confidence 34443 4555554 4788 77776666543 3699999987532 1233 344433 68889998652 44444
Q ss_pred EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107 259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC 328 (331)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~ 328 (331)
...++..+++.+....++.+..+..+.+.+..+.++|++. .++++.++ ..++|++||+.++.
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT--------EIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS--------EEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC--------EEEEEEeCCCCCCEEEEEECCCCc
Confidence 4444444455544323566677777788899999999874 44444431 45799999998765
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=2.1e-15 Score=122.26 Aligned_cols=234 Identities=9% Similarity=0.028 Sum_probs=164.2
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEE-cCCCCeEEEEec-CCeEE
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEW-NPSATSITVGLS-DGSVS 130 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~ 130 (331)
+-..+.+++++|+ +.++++...++.+ +|+...... +...+..+++ .+++..+++... ++.|.
T Consensus 28 ~~~~p~~v~~~~~----g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 28 QFTEPSGVAVNAQ----NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp CBSCEEEEEECTT----CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred ccCCCceEEECCC----CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 4456899999999 8888888888888 887664321 1246789999 466666665543 89999
Q ss_pred EEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 131 IVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 131 i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
+||. +++. +..+. .+...+..++++| +++++++...++.|.+||.. ++....+.. ..+...+..++++| +++
T Consensus 104 ~~d~-~g~~--~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~-~g~ 176 (286)
T 1q7f_A 104 IYNQ-YGQF--VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVND-KQE 176 (286)
T ss_dssp EECT-TSCE--EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECS-SSE
T ss_pred EECC-CCcE--EEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECC-CCC
Confidence 9994 4433 33343 2345688999998 67888888888999999965 443444432 12455789999999 888
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeec--CCceEEEEECCCCCCeEEEEEecC-cEEEEEEcCcccceeEEeecCCc
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCL--GGGVWRIKHHPFIPGLVLAACMHN-GFAVVKVGGEKAEVLETYAKHGS 286 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~ 286 (331)
++++...++.|++||... ..+.. +... ...+..++++|++ .++++...++ .+.+|+. .++.+..+..+..
T Consensus 177 l~v~~~~~~~i~~~~~~g--~~~~~-~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~---~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEG--QYLRQ-IGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ---DGQLISALESKVK 249 (286)
T ss_dssp EEEEEGGGTEEEEEETTC--CEEEE-ESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT---TSCEEEEEEESSC
T ss_pred EEEEECCCCEEEEEcCCC--CEEEE-EccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECC---CCCEEEEEcccCC
Confidence 888888899999999753 33333 1222 2568899999986 5555554554 7777763 2566666665433
Q ss_pred --ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 287 --LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 287 --~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+.+++++|++ +++++ + .|++|++|++...
T Consensus 250 ~~~~~~i~~~~~g---------~l~vs-~-~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMDDG---------SVVLA-S-KDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEETTT---------EEEEE-E-TTTEEEEEECSCC
T ss_pred CCcceeEEECCCC---------cEEEE-C-CCCeEEEEEcccc
Confidence 47799999998 67776 6 6999999998653
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=7.7e-15 Score=121.43 Aligned_cols=247 Identities=10% Similarity=0.008 Sum_probs=167.7
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCC--------------CCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEG--------------DKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWS 75 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~--------------~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 75 (331)
+.+..|++.|.+ +++++...+..-. .....++.|.+||..++. .+......+......++++
T Consensus 24 ~~v~~va~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 24 GQVSGVALDSKN---NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-ILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp SCEEEEEECTTC---CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-EEEEECTTTCSSEEEEEEC
T ss_pred CCceEEEECCCC---CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-EEeccCCCccCCceEEEEC
Confidence 457788888776 7887776210000 000012579999988765 2332222334578999999
Q ss_pred CCCCCCCCeEEEEcCCccE-EEecCCCc--c--------------cCccEEEEEEcC-CCCeEEEEe-cCCeEEEEEccc
Q 020107 76 PVGGNAGPFLAQADADGGL-LRDITGEK--I--------------SSSMCLCLEWNP-SATSITVGL-SDGSVSIVSVVE 136 (331)
Q Consensus 76 ~~~~~~~~~l~~~~~dg~i-iw~~~~~~--~--------------~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~ 136 (331)
|+ +.++++...++.+ +|+..... . +-.....++++| ++..+++.+ .++.|++|+..
T Consensus 100 ~~----g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~- 174 (329)
T 3fvz_A 100 TD----GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS- 174 (329)
T ss_dssp TT----SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-
T ss_pred CC----CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-
Confidence 99 8888888888888 88876541 1 122578999999 677777775 68999999954
Q ss_pred cceeeeeeeec----------ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecC
Q 020107 137 SQLEVLQQWKA----------HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPS 206 (331)
Q Consensus 137 ~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 206 (331)
++. +..+.. +-.....++++|+.+.++++...++.|++||..+++....+.. ..+...+..++++|
T Consensus 175 g~~--~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~p- 250 (329)
T 3fvz_A 175 GKF--VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIP- 250 (329)
T ss_dssp SCE--EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEET-
T ss_pred CCE--EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecC-
Confidence 433 333321 2234789999984478888888999999999998877666654 33667888999988
Q ss_pred CCCEEEEEe-------cCCeEEEEEecCCCCCceeee--eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 207 DSNTLLTGS-------YDEYLRVWDVRSISKPVNETS--VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 207 ~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+..+++.+ .+..|++||+.++ +.+..+. ..+...+..++++|++ .++++...++.|++|++..
T Consensus 251 -g~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 251 -GFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -TEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred -CEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence 43444333 3448999999875 4343311 2455678999999996 6666666778888887754
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=5.9e-17 Score=137.50 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=166.8
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+..++|+|++ ++||..... ..+..|.+|++.+++ ...+...+......+.|+|+ ++.|+.++.+
T Consensus 38 ~~~~~~SpdG---~~l~~~~~~-------~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~spd----g~~l~~~~~~ 101 (396)
T 3c5m_A 38 FYQKCFTQDG---KKLLFAGDF-------DGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFISTD----ERAFFYVKNE 101 (396)
T ss_dssp TTSCCBCTTS---CEEEEEECT-------TSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECTT----SSEEEEEETT
T ss_pred eecCcCCCCC---CEEEEEEec-------CCCceEEEEECCCCc--EEEeecCCCCccccceECCC----CCEEEEEEcC
Confidence 4566777766 787777510 023468888887764 33342323222334889999 8999998888
Q ss_pred ccE-EEecCCCccc------CccEEE-------------------EEEcCCCCeEEEE-----ecCCeEEEEEcccccee
Q 020107 92 GGL-LRDITGEKIS------SSMCLC-------------------LEWNPSATSITVG-----LSDGSVSIVSVVESQLE 140 (331)
Q Consensus 92 g~i-iw~~~~~~~~------~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~ 140 (331)
+.+ +|++.+.+.. ...... +.|+|+++.++.. ..+..|.+||+.+++..
T Consensus 102 ~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 102 LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence 888 9998775431 111111 3467777766554 35678999999887643
Q ss_pred eeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
.+ ..+...+..+.|+|.++..|+..+.+ ..|.+||+..++....... .....+..+.|+| +++.|+..
T Consensus 182 ~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~sp-dg~~l~~~ 255 (396)
T 3c5m_A 182 VI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH--AEGESCTHEFWIP-DGSAMAYV 255 (396)
T ss_dssp EE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC--CTTEEEEEEEECT-TSSCEEEE
T ss_pred ee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc--CCCccccceEECC-CCCEEEEE
Confidence 22 24566788999998445555554433 4688889876543222221 0134688899999 88877776
Q ss_pred ecC-----CeEEEEEecCCCCCceeeeeecCCceEEEEECC-CCCCeEEEEEe----------------cCcEEEEEEcC
Q 020107 215 SYD-----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FIPGLVLAACM----------------HNGFAVVKVGG 272 (331)
Q Consensus 215 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~ 272 (331)
+.+ +.|.+||+.+++ .... ....+ .. +.|+| ++ ..++.++. +..+.+|++..
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~-~~~l--~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 256 SYFKGQTDRVIYKANPETLE-NEEV--MVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEETTTCCEEEEEECTTTCC-EEEE--EECCS-EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred ecCCCCccceEEEEECCCCC-eEEe--eeCCC-CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 554 459999998753 2221 22222 33 89999 87 45554432 24455565543
Q ss_pred cccceeEEeecCCc-----------ceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE--cCCCc
Q 020107 273 EKAEVLETYAKHGS-----------LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW--MPESD 327 (331)
Q Consensus 273 ~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW--~~~~~ 327 (331)
++. ..+..+.. .+..+.|+|++ +.|+.++..++...+| +++++
T Consensus 330 --~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg---------~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 330 --KSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPND---------DGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp --TBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTS---------SEEEEEECTTSSCEEEEEECCTT
T ss_pred --Cce-EEccCCCCccccccccccCCCCCceEccCC---------CeEEEEecCCCCceEEEEEEccc
Confidence 232 33444443 25678999998 5666655245655555 44444
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=7.5e-15 Score=121.68 Aligned_cols=255 Identities=9% Similarity=0.025 Sum_probs=167.5
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+.++.|.+.. ..++... .++.++.|. .. .+..+ ..+...+.+++|+|+ +++++++..
T Consensus 7 ~~~~~~~~~~~---~~~~~~~----------~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~----g~l~~~~~~ 64 (333)
T 2dg1_A 7 DLPTLFYSGKS---NSAVPII----------SESELQTIT--AE--PWLEI-SKKGLQLEGLNFDRQ----GQLFLLDVF 64 (333)
T ss_dssp CCCBCCSCGGG---GCSSCCC----------CGGGSCEEE--CE--EEEEE-ESSCCCEEEEEECTT----SCEEEEETT
T ss_pred ccceeeecCCc---cceeEEe----------ecccCcccc--cc--eeEEE-eccCccccCcEECCC----CCEEEEECC
Confidence 45667777665 4444433 488899992 11 23333 445566899999998 888888888
Q ss_pred CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 91 DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 91 dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
++.+ +|+..+.+. +...+.+++++++++++++...+ +.|.+||.++++...+.........+.+++++|
T Consensus 65 ~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC
Confidence 8888 898876543 34678999999999877777666 689999998765432211112345688999998
Q ss_pred CCCcEEEEEcC------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCc
Q 020107 160 HQPHMVYTGSD------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPV 232 (331)
Q Consensus 160 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~ 232 (331)
+++++++... .+.|..+|..+++... +.. +...+..++|+| +++.| ++...++.|.+||++.....+
T Consensus 145 -~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~---~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 145 -KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQ---NISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp -TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEE---EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred -CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eec---CCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 6777776553 3566666665544322 222 234578999999 88755 445567899999997422322
Q ss_pred ee----eeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc------ceeeeeecCCC
Q 020107 233 NE----TSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS------LAYGADWQRGR 297 (331)
Q Consensus 233 ~~----~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~ 297 (331)
.. ...... ..+..+++++++ .++++...++++.+|+. .++.+..+..+.. .+.+++|+|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred ccccceEEEecCCCCCCCceEECCCC-CEEEEEcCCCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 21 011111 367889999996 55555555677666654 2556666654433 68899999986
No 173
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=1.4e-15 Score=138.43 Aligned_cols=242 Identities=8% Similarity=-0.088 Sum_probs=158.0
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEE-----cCCccE-EEecCCCccc-C---ccE--EEEEEcCCCCeEEEEecCCe----
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQA-----DADGGL-LRDITGEKIS-S---SMC--LCLEWNPSATSITVGLSDGS---- 128 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~-----~~dg~i-iw~~~~~~~~-~---~~v--~~~~~~~~~~~l~~~~~dg~---- 128 (331)
|...+..++|||+ +++||.+ +.+..+ +|++.+++.. . ..+ ..++|+||++.|+.++.+..
T Consensus 119 ~~~~~~~~~~SPD----G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 119 GTVSLGTWAVSWD----GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SCEEEEEEEECTT----SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCEEEEEEEECCC----CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 4446999999999 8888833 334556 9999887643 1 122 67899999999999988766
Q ss_pred ---------EEEEEcccccee--eeeeeecccceeEEEeeCCCCCcEEEEEcCCC----eEEEEEccCCCceeeeecccC
Q 020107 129 ---------VSIVSVVESQLE--VLQQWKAHEFELWATSFDVHQPHMVYTGSDDC----KFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 129 ---------i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~ 193 (331)
|++|++.++... .+.....+...+..+.|+| ++++|+..+.++ .|.++|..++. ...+..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~--- 269 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK--- 269 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE---
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec---
Confidence 999999886532 2333344556788999999 667776666555 67777665544 333433
Q ss_pred CCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCC-ceeeeeec-CCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 194 HKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKP-VNETSVCL-GGGVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
+...+....+ + ++.+++... .++.|.+||+.++... ...+...+ ...+..++|+.+ .++++...++..++|
T Consensus 270 ~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 270 GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGG--HLSLEYLKDATSEVR 345 (695)
T ss_dssp CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETT--EEEEEEEETTEEEEE
T ss_pred CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECC--EEEEEEEECCEEEEE
Confidence 4555566666 4 455444443 2578999999775321 23322223 456888888832 555555556666677
Q ss_pred EEcCcccceeEEeecC-CcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107 269 KVGGEKAEVLETYAKH-GSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC 328 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~ 328 (331)
.+... ++....+..+ .+.+..++++|++. .++++.++ ..++|++||+.++.
T Consensus 346 ~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLK-GKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETT-CCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCC-CCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCc
Confidence 66533 4555566554 67788899999874 34433331 45789999998764
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=7.4e-16 Score=130.48 Aligned_cols=243 Identities=10% Similarity=-0.000 Sum_probs=153.0
Q ss_pred eeecCcEeE-----EEEcCCCCCCCCeEEEEcC-Ccc--E-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCC
Q 020107 63 RMDTAGIFD-----IKWSPVGGNAGPFLAQADA-DGG--L-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDG 127 (331)
Q Consensus 63 ~~~~~~v~~-----~~~~~~~~~~~~~l~~~~~-dg~--i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg 127 (331)
..|...... .+|+|+ ++.|+.++. +|. + +|++.+++. +...+..+.|+|+++.|+.++.++
T Consensus 27 t~~~~~~~~~~~~~~~~SpD----g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 27 TPPDVTCHRNYFYQKCFTRD----GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp SCTTSCEECCCTTSCCBCTT----SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred cCCcccccchhhcCccCCCC----CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 445444444 789999 888888877 674 4 778776543 223334678999999999999999
Q ss_pred eEEEEEccccceeeeeeeecccceeEEEe--eCCCCCcEEEEE----------------------cCCCeEEEEEccCCC
Q 020107 128 SVSIVSVVESQLEVLQQWKAHEFELWATS--FDVHQPHMVYTG----------------------SDDCKFSGWDIRESP 183 (331)
Q Consensus 128 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~ 183 (331)
.|++||+.+++...+. ..+...+.... ++| ++..++.. ..+..|.+||+.+++
T Consensus 103 ~l~~~d~~~g~~~~~~--~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 103 NLMRVDLATLEENVVY--QVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEEETTTCCEEEEE--ECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred eEEEEECCCCcceeee--echhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 9999999988654333 33344443333 477 66666532 244789999999886
Q ss_pred ceeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCceeeeeecC--CceEEEEECCCCCCe
Q 020107 184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNETSVCLG--GGVWRIKHHPFIPGL 255 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 255 (331)
.... .. +...+..+.|+|.+++.|+....+ ..|.++|.... . ... +..+. ..+...+|+|++..+
T Consensus 180 ~~~l-~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~-l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 180 STVI-LQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N-MRK-VKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp EEEE-EE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C-CEE-SCCCCTTEEEEEEEECTTSSCE
T ss_pred eEEe-ec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c-eEE-eeeCCCCcccccceECCCCCEE
Confidence 4433 33 566789999999556677666653 36777777653 2 222 12333 357889999998444
Q ss_pred EEEEEecCc----EEEEEEcCcccceeEEeecCCcc---eeeeeecCCCCcccccccCcEEEEe---------ecCCCeE
Q 020107 256 VLAACMHNG----FAVVKVGGEKAEVLETYAKHGSL---AYGADWQRGRSSLEGKRKNSLVATC---------SFYDRLL 319 (331)
Q Consensus 256 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~l~s~---------~~~d~~i 319 (331)
++++...+. +.+|++.....+.+..+.++... .....|+|++ +.|+.. . .+..|
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg---------~~l~~~~~~~~~~~~~-~~~~i 322 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG---------SDAPVDVQDDSGYKIE-NDPFL 322 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE---------CCC------------C-CCCEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC---------CcceeEeeeccccccC-CCCEE
Confidence 444443332 55666554323344444432111 2234789998 455532 4 57799
Q ss_pred EEEcCCCccc
Q 020107 320 RIWMPESDCL 329 (331)
Q Consensus 320 ~iW~~~~~~~ 329 (331)
++||++++..
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999987643
No 175
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=2.7e-16 Score=131.04 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=144.3
Q ss_pred EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Cc--cEEEEEEcCCCCeEEE-EecCCeEEEEEccccceee
Q 020107 71 DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SS--MCLCLEWNPSATSITV-GLSDGSVSIVSVVESQLEV 141 (331)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~--~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~ 141 (331)
.++++++ +.++++++.++.+ +|++.+.+.. .. .+..++|+|+++.+++ +..++.|.+||+.+++.
T Consensus 4 g~~~~~~----~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-- 77 (349)
T 1jmx_B 4 GPALKAG----HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-- 77 (349)
T ss_dssp CCCCCTT----CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--
T ss_pred cccccCC----CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--
Confidence 3456777 7899999999999 9999876541 22 5778999999987654 45689999999988754
Q ss_pred eeeeec-c-----cceeEEEeeCCCCCcEEEEEcCC------------CeEEEEEccCCCceeeeecccCCCcceEEEEE
Q 020107 142 LQQWKA-H-----EFELWATSFDVHQPHMVYTGSDD------------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIAS 203 (331)
Q Consensus 142 ~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 203 (331)
+..+.. + ...+..++|+| +++++++++.+ +.|.+||+.+++....+.... +...+.+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA 155 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence 333332 2 23378899999 77788877755 899999998854333222211 3446889999
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC-C-----------------------ceEEEEECCCCCCeEEEE
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG-G-----------------------GVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~-----------------------~v~~~~~~~~~~~~~~~~ 259 (331)
+| +++ +++++ +.|.+||+.++ +.... ..... . ....+++++++.......
T Consensus 156 s~-dg~-l~~~~--~~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 156 AD-DGS-LYVAG--PDIYKMDVKTG-KYTVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp CT-TSC-EEEES--SSEEEECTTTC-CEEEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred CC-CCc-EEEcc--CcEEEEeCCCC-ceecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 99 888 55554 34999999875 33332 11111 0 334466665431111111
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.....+..++.... .-....+..+...+.+++|+| ++ ++++++ ++.|.+||+.++.
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~dg---------~~l~~~---~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 230 DLLYGYLSVDLKTG-KTHTQEFADLTELYFTGLRSPKDP---------NQIYGV---LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEEEEETTTC-CEEEEEEEECSSCEEEEEECSSCT---------TEEEEE---ESEEEEEETTTTE
T ss_pred ccceeEEEEeccCC-cEEecccccCCCcceeeEecCCCC---------CEEEEE---cCeEEEEECccCe
Confidence 11111111222222 111222334566788999999 88 577665 6799999998764
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=7.9e-15 Score=122.20 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=155.0
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC---cc--E-EEecCCCcc-----cCccEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD---GG--L-LRDITGEKI-----SSSMCLCL 111 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---g~--i-iw~~~~~~~-----~~~~v~~~ 111 (331)
++.|.+|++.+++ ...+ ..+..++|+|+ ++.|+.++.+ +. + +|++.+++. ... +..+
T Consensus 42 ~~~l~~~d~~~~~--~~~l-----~~~~~~~~SpD----g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~ 109 (347)
T 2gop_A 42 ENTIVIENLKNNA--RRFI-----ENATMPRISPD----GKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSL 109 (347)
T ss_dssp EEEEEEEETTTCC--EEEE-----ESCEEEEECTT----SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEE
T ss_pred cceEEEEeCCCCc--eEEc-----ccCCCeEECCC----CCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccce
Confidence 6689999998764 3333 46888999999 8888887654 33 3 677766543 133 8899
Q ss_pred EEcCCCCeEEEEecC---------------------------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcE
Q 020107 112 EWNPSATSITVGLSD---------------------------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHM 164 (331)
Q Consensus 112 ~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (331)
+|+|+++.|+.++.+ ..|.+||+.+++. +..+.. . .+..++|+| ++ +
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~-~-~~~~~~~sp-dg-~ 183 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK-P-RFSSGIWHR-DK-I 183 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE-E-TTCEEEEET-TE-E
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC-C-CcccccCCC-Ce-E
Confidence 999999998887642 5789999987754 123333 3 688999999 66 7
Q ss_pred EEEEcCCC-------eEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC--------CeEEEEEecCCC
Q 020107 165 VYTGSDDC-------KFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD--------EYLRVWDVRSIS 229 (331)
Q Consensus 165 l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~ 229 (331)
++++..+. ...+|.+.+++ ...+.. + ..+..+ +| +++.|+..+.+ ..|.+|| ++
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~---~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~- 252 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE---K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK- 252 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE---E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS-
T ss_pred EEEEecccccccccccccEEEeCCCc-eEEecc---C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC-
Confidence 77775542 34555554443 333333 3 445544 89 88888877754 3677777 32
Q ss_pred CCceeeeeecCCceEE-EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcE
Q 020107 230 KPVNETSVCLGGGVWR-IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSL 308 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 308 (331)
+ ...+...+...+.. +.|+ + ++++++..++..++| +. . ++.. .+..+...|.+++|+| . +
T Consensus 253 ~-~~~l~~~~~~~~~~~~~~s-d--g~~~~~~~~~~~~l~-~~-~-g~~~-~~~~~~~~v~~~~~s~-~----------~ 313 (347)
T 2gop_A 253 E-VMGILDEVDRGVGQAKIKD-G--KVYFTLFEEGSVNLY-IW-D-GEIK-PIAKGRHWIMGFDVDE-I----------V 313 (347)
T ss_dssp C-EEESSTTCCSEEEEEEEET-T--EEEEEEEETTEEEEE-EE-S-SSEE-EEECSSSEEEEEEESS-S----------E
T ss_pred c-eEeccccCCcccCCccEEc-C--cEEEEEecCCcEEEE-Ec-C-CceE-EEecCCCeEEeeeeeC-c----------E
Confidence 2 22322455677886 9999 7 466666677778888 77 3 4443 3444578899999999 5 6
Q ss_pred EEEeecCCCeE-EEEcCC
Q 020107 309 VATCSFYDRLL-RIWMPE 325 (331)
Q Consensus 309 l~s~~~~d~~i-~iW~~~ 325 (331)
+++++ .++.. .+|.++
T Consensus 314 ~~~~~-~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKE-TATRLRELFTWD 330 (347)
T ss_dssp EEEEE-CSSSCCEEEEES
T ss_pred EEEEc-CCCChHHheEeC
Confidence 66666 55544 666654
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1.7e-15 Score=137.27 Aligned_cols=250 Identities=8% Similarity=-0.026 Sum_probs=155.8
Q ss_pred CCCcE-EEEEeecccCCCCCCCCCcEEEEecc--C-cccceEEeEee----ecCcEeEEEEcCCCCCCCCeEEEEcCC--
Q 020107 22 SYHHV-LAASTYTLQEGDKPSRNGSISLFNVN--A-EEKNLELLYRM----DTAGIFDIKWSPVGGNAGPFLAQADAD-- 91 (331)
Q Consensus 22 ~~~~~-la~g~~~~~~~~~~~~~g~i~vw~~~--~-~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~l~~~~~d-- 91 (331)
|+++. ||.+.. .+..|+++++. + .. ...+... |...+..++|+|+ ++.|+.++.+
T Consensus 88 PDg~~~la~~~~---------~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spD----g~~l~~~~~~~~ 152 (662)
T 3azo_A 88 PAGGPLLVFTHF---------GDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPE----RGEVWCMAEEFT 152 (662)
T ss_dssp SSSSCEEEEEBT---------TTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETT----TTEEEEEEEEEC
T ss_pred cCCCeEEEEEEC---------CCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCC----CCEEEEEEeccc
Confidence 34477 777751 35667777765 2 32 3333221 5567899999999 8999988876
Q ss_pred --------ccE-EEecCC------Ccc------cCccEEEEEEcCCCCeEEEEecC--------CeEEEEEcc-ccceee
Q 020107 92 --------GGL-LRDITG------EKI------SSSMCLCLEWNPSATSITVGLSD--------GSVSIVSVV-ESQLEV 141 (331)
Q Consensus 92 --------g~i-iw~~~~------~~~------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~~~~ 141 (331)
..+ +|++.+ ... +...+..++|+|||+.|+.++.+ ..|++||+. +++...
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 345 898877 332 23456778999999999888754 379999998 452212
Q ss_pred eee-eecccceeEEEeeCCCCCcEEEEEcCCC--eEEEEEccCCCceeeeecccCCCcc--------eEEEEEecCCCCE
Q 020107 142 LQQ-WKAHEFELWATSFDVHQPHMVYTGSDDC--KFSGWDIRESPFKLAFQNSKIHKMG--------VCCIASIPSDSNT 210 (331)
Q Consensus 142 ~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~ 210 (331)
... ...+...+..++|+| ++++++++..++ .|.+||+.+++....... +... +..++|+| ++.+
T Consensus 233 ~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~---~~~~~~p~w~~~~~~~~~~~-~~~~ 307 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAATQLCRR---EEEFAGPLWTPGMRWFAPLA-NGLI 307 (662)
T ss_dssp EEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCEEESSCC---SSBSSCCCCSTTCCSEEECT-TSCE
T ss_pred cEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCceeecccc---cccccCccccccCceEeEeC-CCEE
Confidence 233 334567899999999 666888888888 666667656653333222 2221 56788999 8899
Q ss_pred EEEEecCCeEEEEEecCCCCCceeeeeecCCceEEE-EECCCCCCeEEEEEecC-cEEEEEEcCcccceeEEeecCCcce
Q 020107 211 LLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRI-KHHPFIPGLVLAACMHN-GFAVVKVGGEKAEVLETYAKHGSLA 288 (331)
Q Consensus 211 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v 288 (331)
++++.. +.++||.+......+.. +..+...+..+ .++ ++.+++++++.+ ...+|.+....++.......+...+
T Consensus 308 ~~~~~~-~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~ 383 (662)
T 3azo_A 308 AVVHGK-GAAVLGILDPESGELVD-AAGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV 383 (662)
T ss_dssp EEEEBS-SSCEEEEEETTTTEEEE-CCSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred EEEEEc-CccEEEEEECCCCcEEE-ecCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence 999988 99999955432222333 34566677766 544 436666665544 3346655433233333223443333
Q ss_pred eeeeecC
Q 020107 289 YGADWQR 295 (331)
Q Consensus 289 ~~~~~~~ 295 (331)
....+.+
T Consensus 384 ~~~~~~~ 390 (662)
T 3azo_A 384 DPAYYPE 390 (662)
T ss_dssp CGGGSCC
T ss_pred CccccCc
Confidence 3344443
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=2.4e-14 Score=115.99 Aligned_cols=231 Identities=8% Similarity=0.019 Sum_probs=157.6
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-----eecCcEeEEEEc-CCCCCCCCe
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-----MDTAGIFDIKWS-PVGGNAGPF 84 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~~~~ 84 (331)
.+.+|++.|.+ +++++.. .++.|++|+.+.. .+..+.. .+...+..+++. ++ +.+
T Consensus 31 ~p~~v~~~~~g---~l~v~~~----------~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~----g~l 91 (286)
T 1q7f_A 31 EPSGVAVNAQN---DIIVADT----------NNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNS----GDI 91 (286)
T ss_dssp CEEEEEECTTC---CEEEEEG----------GGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTT----TEE
T ss_pred CCceEEECCCC---CEEEEEC----------CCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCC----CeE
Confidence 35667776655 7777765 5889999998743 2333211 233568899994 55 666
Q ss_pred EEEEcC-CccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee--cccceeEE
Q 020107 85 LAQADA-DGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEFELWA 154 (331)
Q Consensus 85 l~~~~~-dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~v~~ 154 (331)
+++... ++.+ +|+...... +...+.+++++++++.+++...++.|.+||... +. +..+. .+...+..
T Consensus 92 ~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~--~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 92 IVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV--LHKFGCSKHLEFPNG 168 (286)
T ss_dssp EEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE--EEEEECTTTCSSEEE
T ss_pred EEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE--EEEeCCCCccCCcEE
Confidence 666643 6667 887443221 234678999999998777777789999999753 32 33332 34456889
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCCCce
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISKPVN 233 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~ 233 (331)
++++| +++++++...++.|++||.. ++....+.. .++...+..++++| +++++++...++ .|.+||... +.+.
T Consensus 169 i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g--~~~~ 242 (286)
T 1q7f_A 169 VVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG--QLIS 242 (286)
T ss_dssp EEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS--CEEE
T ss_pred EEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC--CEEE
Confidence 99998 77888888889999999975 443444433 22336789999999 888888887776 999999643 3333
Q ss_pred eeeeecC--CceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 234 ETSVCLG--GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 234 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
. ...+. ..+..++++|++ .+++++.++.+.+|++..
T Consensus 243 ~-~~~~~~~~~~~~i~~~~~g--~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 243 A-LESKVKHAQCFDVALMDDG--SVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp E-EEESSCCSCEEEEEEETTT--EEEEEETTTEEEEEECSC
T ss_pred E-EcccCCCCcceeEEECCCC--cEEEECCCCeEEEEEccc
Confidence 3 22332 247899999985 455556778888888754
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=5.7e-14 Score=114.38 Aligned_cols=237 Identities=8% Similarity=-0.071 Sum_probs=160.9
Q ss_pred eecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 64 MDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 64 ~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
.+.....+++|+|+ ++ +++++..++.+ .|+..+.. .+...+.+++++++++++++...++.|.+||..++
T Consensus 25 ~~~~~~eg~~~d~~----g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 25 DGFTWTEGPVYVPA----RSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp CCCSSEEEEEEEGG----GTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred cCCccccCCeEeCC----CCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34556789999999 77 78888888888 88887651 13456889999999998777777899999999777
Q ss_pred ceeeeeeee-c-ccceeEEEeeCCCCCcEEEE----Ec-------------CCCeEEEEEccCCCceeeeecccCCCcce
Q 020107 138 QLEVLQQWK-A-HEFELWATSFDVHQPHMVYT----GS-------------DDCKFSGWDIRESPFKLAFQNSKIHKMGV 198 (331)
Q Consensus 138 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 198 (331)
+...+.... . ....+..++++| +++++++ ++ ..+.|..+|.. ++ ...+.. +....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~---~~~~~ 174 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR---DRVKP 174 (296)
T ss_dssp CEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC---CCSSE
T ss_pred cEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec---CCCCC
Confidence 653332111 1 122466899998 7787776 33 13456556554 33 333333 56678
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEEecCCCCC-c-eeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc
Q 020107 199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP-V-NETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE 276 (331)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
..++|+| +++.+++.+.++.|.+||+...... . ...+..+.+.+..+++++++ .++++. .+++.+|+.. ++
T Consensus 175 ~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~---g~ 247 (296)
T 3e5z_A 175 NGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD---GD 247 (296)
T ss_dssp EEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT---SC
T ss_pred ccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC---CC
Confidence 9999999 8888877778899999999732222 0 11112345567789999996 444444 6776666542 67
Q ss_pred eeEEeecCCcceeeeee-cCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 277 VLETYAKHGSLAYGADW-QRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 277 ~~~~~~~h~~~v~~~~~-~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.+..+..+.. +++++| .|++ +.|+.++ .+ .|.-+++++..+
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~---------~~L~v~t-~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEG---------RTLYMTV-ST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTS---------CEEEEEE-TT-EEEEEECSCCBC
T ss_pred EEEEEECCCC-ceeEEEECCCC---------CEEEEEc-CC-eEEEEEcccccc
Confidence 7777877777 999999 4776 5777776 44 555556665543
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=9.2e-13 Score=107.11 Aligned_cols=271 Identities=10% Similarity=0.046 Sum_probs=179.1
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+.++.+.+.+ +++++.. .++.|.+|+.. .. +.... ..+...+.++++.++ +.++++..
T Consensus 16 ~~~~i~~d~~g---~l~v~~~----------~~~~v~~~d~~-~~--~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKG---KVWITQH----------KANMISCINLD-GK--ITEYPLPTPDAKVMCLTISSD----GEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTS---CEEEEET----------TTTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTT----SCEEEEET
T ss_pred CccceEECCCC---CEEEEec----------CCCcEEEEcCC-CC--eEEecCCcccCceeeEEECCC----CCEEEeCC
Confidence 45667666654 6666553 47889999988 43 33332 223466999999998 88888877
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.++.+ .|+...... ....+.++++.+++...++...++.|..||. +++.... ........+..+++.+ ++
T Consensus 76 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~~~~-~g 152 (299)
T 2z2n_A 76 AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELPNKGSYPSFITLGS-DN 152 (299)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECT-TS
T ss_pred CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe-cCCCCCCCCceEEEcC-CC
Confidence 77777 777652210 2346789999999987777777889999998 5543221 2222345688999998 67
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceee-eeecCC
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNET-SVCLGG 241 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 241 (331)
.++++...++.|..||. +++.. .+.. ......+..+++++ ++.++++...++.|..||. ++ . +... ......
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g-~-~~~~~~~~~~~ 225 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDIT-EFKI-PTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SG-E-ITEFKIPTPNA 225 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TC-C-EEEEECSSTTC
T ss_pred CEEEEeCCCCEEEEEcC-CCcEE-EeeC-CCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CC-c-EEEEECCCCCC
Confidence 77777777889999998 55533 2322 22455688999999 7887777667889999998 53 2 2221 122446
Q ss_pred ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe--ecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeE
Q 020107 242 GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY--AKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLL 319 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i 319 (331)
.+..+++.+++ .++++....+++..++.. ++ +..+ ..+...+.++++ +++ .+.++.. .+.|
T Consensus 226 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~---g~-~~~~~~~~~~~~~~~i~~-~~g---------~l~v~~~--~~~l 288 (299)
T 2z2n_A 226 RPHAITAGAGI-DLWFTEWGANKIGRLTSN---NI-IEEYPIQIKSAEPHGICF-DGE---------TIWFAME--CDKI 288 (299)
T ss_dssp CEEEEEECSTT-CEEEEETTTTEEEEEETT---TE-EEEEECSSSSCCEEEEEE-CSS---------CEEEEET--TTEE
T ss_pred CceeEEECCCC-CEEEeccCCceEEEECCC---Cc-eEEEeCCCCCCccceEEe-cCC---------CEEEEec--CCcE
Confidence 78999999986 455444456777777652 33 2233 344567889999 776 4555544 5677
Q ss_pred EEEcCCCcc
Q 020107 320 RIWMPESDC 328 (331)
Q Consensus 320 ~iW~~~~~~ 328 (331)
..++++++.
T Consensus 289 ~~~~~~~~~ 297 (299)
T 2z2n_A 289 GKLTLIKDN 297 (299)
T ss_dssp EEEEEC---
T ss_pred EEEEcCccc
Confidence 777777654
No 181
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=1e-13 Score=127.18 Aligned_cols=242 Identities=11% Similarity=-0.043 Sum_probs=154.7
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEcCC-c----cE-EEecCCCcccCcc-----EEEEEEcCCCCeEEEEecCCe-----
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQADAD-G----GL-LRDITGEKISSSM-----CLCLEWNPSATSITVGLSDGS----- 128 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~~d-g----~i-iw~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~----- 128 (331)
|...+..++|||+ +++|+.+..+ | .+ +|++.+++..... +..++|+|| +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 3346889999999 8888876544 3 35 9999887653221 246889999 98888876554
Q ss_pred ---------EEEEEccccceeeeeeee--cccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCC--Cceeeeec
Q 020107 129 ---------VSIVSVVESQLEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRES--PFKLAFQN 190 (331)
Q Consensus 129 ---------i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~~~~ 190 (331)
|++|++.++.......+. .+...+..+.|+| ++++|+..+.+ ..|++||+.++ +....+..
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 889998776432222232 2333578999999 77777666543 38999999876 31233333
Q ss_pred ccCCCcceEEEEEecCCCCEEEEEecC----CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 191 SKIHKMGVCCIASIPSDSNTLLTGSYD----EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 191 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
+...+.... .| ++..|+..+.+ +.|.+||+.+.......+...+...+..+.|..+ .++++...++..+
T Consensus 315 ---~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~--~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 315 ---DLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGN--RLFASYIHDAKSQ 387 (741)
T ss_dssp ---SSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBT--EEEEEEEETTEEE
T ss_pred ---CCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECC--EEEEEEEECCEEE
Confidence 344444443 47 77777777653 4599999876421223323344455677888732 5555555566666
Q ss_pred EEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107 267 VVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC 328 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~ 328 (331)
+|.+... +.....+.. +.+.+..+.++|++. .++++.++ ..++|++||+.++.
T Consensus 388 l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDR--------HAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETT-SCEEEECBCSSSCEEEEEECCBTCS--------CEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCC-CCceeeccCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCc
Confidence 6666533 455555654 367788999999874 34443331 45899999998764
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=5.4e-14 Score=116.24 Aligned_cols=253 Identities=8% Similarity=-0.061 Sum_probs=166.5
Q ss_pred CCCcEEEEeccCcccceEEeEe-----eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYR-----MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLC 110 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~ 110 (331)
.++.|.++|.++.+ ....+.. ........+.+.. ++++++...++.+ ++|..+.+. .......
T Consensus 15 ~~~~l~~~d~~t~~-~~~~i~~~~n~~~lg~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~ 88 (328)
T 3dsm_A 15 SNATLSYYDPATCE-VENEVFYRANGFKLGDVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY 88 (328)
T ss_dssp CCBEEEEEETTTTE-EECSHHHHHHSSCCBSCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE
T ss_pred CCceEEEEECCCCE-EhhhhHhhhcCcccCccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE
Confidence 48999999998875 1111111 1113367777743 4466666667888 899887665 2356788
Q ss_pred EEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeeccc-----ceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCC
Q 020107 111 LEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHE-----FELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESP 183 (331)
Q Consensus 111 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 183 (331)
+++++++ .++++. .++.|.+||+.+++. ...+.... .....+++ . ++.++++.. .++.|.++|+.+++
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence 9998888 555555 789999999998764 33343222 14456666 2 555555554 48999999999987
Q ss_pred ceeeeecccCCCcceEEEEEecCCCCEEEEEecC----------CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107 184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD----------EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP 253 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (331)
....+.. ......+.++| ++++++++..+ +.|.++|..+. +....+..........++++|++
T Consensus 164 ~~~~i~~----g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~- 236 (328)
T 3dsm_A 164 VVDELTI----GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTR- 236 (328)
T ss_dssp EEEEEEC----SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTS-
T ss_pred EEEEEEc----CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCC-
Confidence 6666654 33456788999 88877776654 78999999874 33333222223478999999987
Q ss_pred CeEEEEEecCcEEEEEEcCccccee--EEeecCCcceeeeeecCCCCcccccccCcEEEEe----ecCCCeEEEEcCC
Q 020107 254 GLVLAACMHNGFAVVKVGGEKAEVL--ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATC----SFYDRLLRIWMPE 325 (331)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----~~~d~~i~iW~~~ 325 (331)
..++++.. .+.+++... ++.. ..+........+++++|++. .++++. . .++.|.+||.+
T Consensus 237 ~~lyv~~~--~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g--------~lyva~~~~y~-~~~~V~v~d~~ 301 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNG--------EVYVADAIDYQ-QQGIVYRYSPQ 301 (328)
T ss_dssp CEEEEESS--SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTC--------CEEEEECTTSS-SEEEEEEECTT
T ss_pred CEEEEEcc--EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCC--------eEEEEcccccc-cCCEEEEECCC
Confidence 45555433 655666543 2322 11122245688999999553 677776 6 78999999998
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=5.2e-14 Score=116.60 Aligned_cols=236 Identities=6% Similarity=-0.069 Sum_probs=155.6
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC---cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE---KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 142 (331)
..|.++.|+|+ ...++....++.+ .|.-... ..+...+.+++|++++++++++..++.|.+||..+++...+
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGK----SNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGG----GGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCC----ccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 34677788887 5566665666666 5521111 11234568999999999777888899999999987764222
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCC----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec--
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDD----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-- 216 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 216 (331)
...+...+.+++++| +++++++...+ +.|.+||..++.....+.. ..+...+..+.++| +++++++...
T Consensus 82 --~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~ 156 (333)
T 2dg1_A 82 --FVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDS-KGGFYFTDFRGY 156 (333)
T ss_dssp --EECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECT-TSCEEEEECCCB
T ss_pred --eeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-CccCCcccceEECC-CCCEEEEecccc
Confidence 223556799999998 67777777666 6899999987764433321 12456789999999 8887776653
Q ss_pred ----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--------EeecC
Q 020107 217 ----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--------TYAKH 284 (331)
Q Consensus 217 ----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h 284 (331)
.+.|..+|.... .+.. .......+..++|+|++..++++...++.+.+|++... +..+. .+.++
T Consensus 157 ~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFR--TVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD-GVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp TTBCCEEEEEECTTSC--CEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SSSEEEEEEEEEEECCSS
T ss_pred ccCCCceEEEEeCCCC--EEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC-CcCcccccceEEEecCCC
Confidence 244555554432 2222 12334457899999997334445445678888888542 22111 12222
Q ss_pred CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 285 GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 285 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+..+++++++ +++++.. .++.|.+|+.+.
T Consensus 233 -~~~~~i~~d~~G---------~l~v~~~-~~~~v~~~d~~g 263 (333)
T 2dg1_A 233 -EGPDSCCIDSDD---------NLYVAMY-GQGRVLVFNKRG 263 (333)
T ss_dssp -SEEEEEEEBTTC---------CEEEEEE-TTTEEEEECTTS
T ss_pred -CCCCceEECCCC---------CEEEEEc-CCCEEEEECCCC
Confidence 467889999998 6777776 689999999854
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=1.9e-12 Score=114.03 Aligned_cols=262 Identities=14% Similarity=0.044 Sum_probs=177.0
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecC--CCcc-----cCccEEEEEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDIT--GEKI-----SSSMCLCLEW 113 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~--~~~~-----~~~~v~~~~~ 113 (331)
.++.|.++|..+.+ .+..+. ....+..+.|+|+ ++++++++.++.+ ++|+. +.+. .......++|
T Consensus 175 ~~~~V~viD~~t~~-v~~~i~--~g~~p~~v~~SpD----Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 175 DAGQIALIDGSTYE-IKTVLD--TGYAVHISRLSAS----GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp TTTEEEEEETTTCC-EEEEEE--CSSCEEEEEECTT----SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred CCCeEEEEECCCCe-EEEEEe--CCCCccceEECCC----CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 68999999998875 343332 2335779999999 9999999999999 99985 4433 1234578999
Q ss_pred c----CCCCeEEEEec-CCeEEEEEccccceeeeeeeec----------c-cceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 114 N----PSATSITVGLS-DGSVSIVSVVESQLEVLQQWKA----------H-EFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 114 ~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
+ |+|++++++.. +++|.++|..+.+. +..+.. | ...+..+..++..+.+++....+|.|.++
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~--~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcE--EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 9 69999888876 69999999887654 444331 1 12577888887666777777888999999
Q ss_pred EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeee----ecCCceEEEEECCCC
Q 020107 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSV----CLGGGVWRIKHHPFI 252 (331)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 252 (331)
|....+....... . .......+.|+| ++++++++. .++.|.++|+.+. +....... +|.+.-..+ ++|++
T Consensus 326 d~~~~~~~~v~~i-~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~ 400 (567)
T 1qks_A 326 DYTDLNNLKTTEI-S-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTF 400 (567)
T ss_dssp ETTCSSEEEEEEE-E-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTT
T ss_pred ecCCCccceeeee-e-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCC
Confidence 9987653332222 1 344577889999 888876655 6789999999985 33333212 233222222 57875
Q ss_pred CCeEEEEE--ecCcEEEEEEcCcc-----cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeec--C----CCeE
Q 020107 253 PGLVLAAC--MHNGFAVVKVGGEK-----AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--Y----DRLL 319 (331)
Q Consensus 253 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~----d~~i 319 (331)
+.+.+++ .++.+.+++..... .+.++++......-..+..+|++. ++..... - ..+|
T Consensus 401 -g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~---------~l~v~~~~~~~~~~~~~v 470 (567)
T 1qks_A 401 -GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ---------YLYVDATLNPEAEISGSV 470 (567)
T ss_dssp -EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS---------EEEEECTTCSSHHHHTCE
T ss_pred -CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC---------eEEEecCCCCCcccCceE
Confidence 3444443 45778888876522 467777775544435577899984 4444320 1 3599
Q ss_pred EEEcCCCc
Q 020107 320 RIWMPESD 327 (331)
Q Consensus 320 ~iW~~~~~ 327 (331)
.++|+++.
T Consensus 471 ~v~d~~~~ 478 (567)
T 1qks_A 471 AVFDIKAM 478 (567)
T ss_dssp EEEEGGGC
T ss_pred EEEECCcc
Confidence 99998865
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=1.2e-13 Score=110.82 Aligned_cols=233 Identities=7% Similarity=-0.061 Sum_probs=157.1
Q ss_pred cEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107 68 GIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL 139 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 139 (331)
...++++.++ +.+++ +...++.+ .|+..+... ....+.+++++++++.+++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~~----g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSA----GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTT----CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCC----CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence 6788999998 77666 44667777 777654322 124567899999988555555 88999999876543
Q ss_pred eeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC
Q 020107 140 EVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE 218 (331)
Q Consensus 140 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 218 (331)
..+. .....+..++++| +++++++...++.|.+|+..+......... ....+..++++| +++++++...++
T Consensus 100 ---~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~i~~~~-~g~l~v~~~~~~ 171 (270)
T 1rwi_B 100 ---TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT---GLNDPDGVAVDN-SGNVYVTDTDNN 171 (270)
T ss_dssp ---EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCC---SCCSCCCEEECT-TCCEEEEEGGGT
T ss_pred ---eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccc---cCCCceeEEEeC-CCCEEEEECCCC
Confidence 2222 2235688999998 777887777789999997665432221111 334678899999 888777777788
Q ss_pred eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-cCCcceeeeeecCCC
Q 020107 219 YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-KHGSLAYGADWQRGR 297 (331)
Q Consensus 219 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 297 (331)
.|.+||..... .... .......+..+++++++ .++++...++.+..|+... ....... .+...+.++++++++
T Consensus 172 ~i~~~~~~~~~-~~~~-~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g 245 (270)
T 1rwi_B 172 RVVKLEAESNN-QVVL-PFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGS---TTSTVLPFTGLNTPLAVAVDSDR 245 (270)
T ss_dssp EEEEECTTTCC-EEEC-CCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTC---SCCEECCCCSCSCEEEEEECTTC
T ss_pred EEEEEecCCCc-eEee-cccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCC---CcceeeccCCCCCceeEEECCCC
Confidence 99999987642 2111 12233668899999986 5555555567766665533 2222222 334578899999998
Q ss_pred CcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 298 SSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 298 ~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+++++.. .++.|+++++.....
T Consensus 246 ---------~l~v~~~-~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 246 ---------TVYVADR-GNDRVVKLTSLEHHH 267 (270)
T ss_dssp ---------CEEEEEG-GGTEEEEECCCGGGS
T ss_pred ---------CEEEEEC-CCCEEEEEcCCCccc
Confidence 6778877 899999999876543
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=1.9e-13 Score=111.26 Aligned_cols=223 Identities=8% Similarity=-0.002 Sum_probs=152.6
Q ss_pred cceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+.++.|.|.+ + +++++. .++.|..|+..+. ...+ ..+...+.+++++|+ +.++++..
T Consensus 29 ~~eg~~~d~~g---~~l~~~~~----------~~~~i~~~~~~~~---~~~~-~~~~~~~~~l~~~~d----g~l~v~~~ 87 (296)
T 3e5z_A 29 WTEGPVYVPAR---SAVIFSDV----------RQNRTWAWSDDGQ---LSPE-MHPSHHQNGHCLNKQ----GHLIACSH 87 (296)
T ss_dssp SEEEEEEEGGG---TEEEEEEG----------GGTEEEEEETTSC---EEEE-ESSCSSEEEEEECTT----CCEEEEET
T ss_pred cccCCeEeCCC---CEEEEEeC----------CCCEEEEEECCCC---eEEE-ECCCCCcceeeECCC----CcEEEEec
Confidence 45678888876 6 777776 6889999998875 2222 446677999999999 88888877
Q ss_pred CCccE-EEecCCCccc----------CccEEEEEEcCCCCeEEE----Ee-------------cCCeEEEEEccccceee
Q 020107 90 ADGGL-LRDITGEKIS----------SSMCLCLEWNPSATSITV----GL-------------SDGSVSIVSVVESQLEV 141 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~~----------~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~ 141 (331)
.++.+ +|+..+++.. ...+..++++|+|+++++ |+ ..+.|..++.. ++.
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-- 164 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-- 164 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--
T ss_pred CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--
Confidence 77777 8888655431 123567999999998776 33 13456666655 432
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-CCCc---eeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-ESPF---KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
..+..+......++|+| +++.+++.+.++.|.+||+. .++. ...+. .+...+..+++++ +++++++. +
T Consensus 165 -~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~p~~i~~d~-~G~l~v~~--~ 236 (296)
T 3e5z_A 165 -SAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFT---VEPGKTDGLRVDA-GGLIWASA--G 236 (296)
T ss_dssp -EEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC---CSSSCCCSEEEBT-TSCEEEEE--T
T ss_pred -EEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee---CCCCCCCeEEECC-CCCEEEEc--C
Confidence 33344555678999999 66777888888999999997 4443 22331 2456677899999 88866666 7
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEE-CCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKH-HPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+.|.+||... +.+.. ...+.. +.+++| .|++ +.+.+++ .++ +|.+...
T Consensus 237 ~~v~~~~~~g--~~~~~-~~~~~~-~~~~~f~~~d~-~~L~v~t-~~~--l~~~~~~ 285 (296)
T 3e5z_A 237 DGVHVLTPDG--DELGR-VLTPQT-TSNLCFGGPEG-RTLYMTV-STE--FWSIETN 285 (296)
T ss_dssp TEEEEECTTS--CEEEE-EECSSC-CCEEEEESTTS-CEEEEEE-TTE--EEEEECS
T ss_pred CeEEEECCCC--CEEEE-EECCCC-ceeEEEECCCC-CEEEEEc-CCe--EEEEEcc
Confidence 8999999863 33333 344455 899999 5775 4455544 456 6666544
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=2.3e-13 Score=113.96 Aligned_cols=267 Identities=10% Similarity=0.039 Sum_probs=165.4
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-----ecCcEeEEEEcCCCCCCCCeEEEE
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-----DTAGIFDIKWSPVGGNAGPFLAQA 88 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~ 88 (331)
.++++|++ ++|.++.........+..++.|.+||..+.+ ....+... +......++++|+ +++|+++
T Consensus 54 ~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-~~~~i~~~~~~~~~g~~p~~i~~spd----g~~l~v~ 125 (361)
T 2oiz_A 54 HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDADKLT-FEKEISLPPKRVQGLNYDGLFRQTTD----GKFIVLQ 125 (361)
T ss_dssp EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETTTCC-EEEEEEECTTBCCBCCCGGGEEECTT----SSEEEEE
T ss_pred ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECcCCc-EEEEEEcCccccccCCCcceEEECCC----CCEEEEE
Confidence 77888776 7777765210000000125679999988765 33333221 1234678999999 8999988
Q ss_pred cC--CccE-EEecCCCcccCc-----cEEEEEEcCCC-CeEEEEecCCeEEEEEccc-cceeee----eeeecccceeEE
Q 020107 89 DA--DGGL-LRDITGEKISSS-----MCLCLEWNPSA-TSITVGLSDGSVSIVSVVE-SQLEVL----QQWKAHEFELWA 154 (331)
Q Consensus 89 ~~--dg~i-iw~~~~~~~~~~-----~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~----~~~~~~~~~v~~ 154 (331)
+. ++.+ +|++.+.+.... ....+.+.|++ ..+++.+.||.+.+|+... ++.... ..+.....++ .
T Consensus 126 n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~ 204 (361)
T 2oiz_A 126 NASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-F 204 (361)
T ss_dssp EESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-C
T ss_pred CCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-E
Confidence 74 5677 999987654211 22235567766 5678888899999999865 432111 1112222222 2
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCce--eeeeccc---CC----CcceEEEEEecCCCCEEEEEec---------
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LAFQNSK---IH----KMGVCCIASIPSDSNTLLTGSY--------- 216 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~~l~~~~~--------- 216 (331)
+.++| ++..++..+.++.+.++|+...... ..+.... .+ ......++++| ++..+++...
T Consensus 205 ~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~ 282 (361)
T 2oiz_A 205 IAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHK 282 (361)
T ss_dssp SCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTT
T ss_pred EEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCccccc
Confidence 33345 4455666677899999999755422 1111100 00 11122368899 7677666543
Q ss_pred --CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 217 --DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 217 --d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
.+.|.+||+.+. +.+.. ...+. +..++|+|++ .++++++. +.+.+|+......+.+.++..+......+.++
T Consensus 283 ~~~~~v~viD~~t~-~~v~~-i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 283 FPAAEIWVMDTKTK-QRVAR-IPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp CCCSEEEEEETTTT-EEEEE-EECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred CCCceEEEEECCCC-cEEEE-EecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 358999999985 44554 23333 9999999998 46666655 88899987662227888876677778899999
Q ss_pred CCC
Q 020107 295 RGR 297 (331)
Q Consensus 295 ~~~ 297 (331)
|++
T Consensus 357 p~G 359 (361)
T 2oiz_A 357 PVG 359 (361)
T ss_dssp CCS
T ss_pred CCC
Confidence 987
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.64 E-value=1.5e-13 Score=110.23 Aligned_cols=233 Identities=6% Similarity=-0.083 Sum_probs=155.9
Q ss_pred cceeEeeecCCCCCcEEE-EEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLA-ASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la-~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+..+++.+.+ ++++ +.. .++.|.+|+..+.. .......+...+.++++.++ +.++++..
T Consensus 25 ~p~~i~~~~~g---~l~v~~~~----------~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~----g~l~v~~~ 85 (270)
T 1rwi_B 25 SPSGVAVDSAG---NVYVTSEG----------MYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGA----GTVYVTDF 85 (270)
T ss_dssp CEEEEEECTTC---CEEEEECS----------SSCEEEEECC-------EECCCCSCCSCCCEEECTT----CCEEEEET
T ss_pred CccceEECCCC---CEEEEccC----------CCCcEEEecCCCcc--cceEeeCCcCCcceeEECCC----CCEEEEcC
Confidence 56677777665 6666 433 47899999876543 22222223356889999998 77666666
Q ss_pred CCccE-EEecCCCccc------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKIS------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
++.+ .|+..+.... ...+..++++++++.+++...++.|.+|+..+... ..........+..++++| ++
T Consensus 86 -~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~-~g 161 (270)
T 1rwi_B 86 -NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDN-SG 161 (270)
T ss_dssp -TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EECCCCSCCSCCCEEECT-TC
T ss_pred -CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--EeeccccCCCceeEEEeC-CC
Confidence 7777 7877654321 25678999999998777767788999997654332 111122234578899998 66
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
+++++...++.|.+||............ +...+..+++++ ++.++++...++.|.+||.... .. ......+...
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~ 235 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQVVLPFT---DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGST-TS-TVLPFTGLNT 235 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCS---SCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCS-CC-EECCCCSCSC
T ss_pred CEEEEECCCCEEEEEecCCCceEeeccc---CCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCC-cc-eeeccCCCCC
Confidence 7777777789999999886653222111 336789999999 8877777777889999998753 22 2211233357
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+..++++|++ .++++...++.+.++++...
T Consensus 236 p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 236 PLAVAVDSDR-TVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTC-CEEEEEGGGTEEEEECCCGG
T ss_pred ceeEEECCCC-CEEEEECCCCEEEEEcCCCc
Confidence 8999999997 56666667788777776553
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=1.3e-14 Score=123.02 Aligned_cols=235 Identities=10% Similarity=-0.001 Sum_probs=144.5
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcC-Cc--cE-EEecCCCccc-----Ccc-EEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADA-DG--GL-LRDITGEKIS-----SSM-CLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~-dg--~i-iw~~~~~~~~-----~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
.+..++|+|+ +++|+.... ++ .+ +|++.+++.. ... ...+.|+|+++.|+.++.++.|++||+.++
T Consensus 37 ~~~~~~~Spd----G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 37 YFYQKCFTQD----GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CTTSCCBCTT----SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeecCcCCCC----CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 3778899999 888776644 34 34 7777765431 122 223789999999999999999999999887
Q ss_pred ceeeeeeeecccceeEE-------------------EeeCCCCCcEEEEE-----cCCCeEEEEEccCCCceeeeecccC
Q 020107 138 QLEVLQQWKAHEFELWA-------------------TSFDVHQPHMVYTG-----SDDCKFSGWDIRESPFKLAFQNSKI 193 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~ 193 (331)
+...+... +...... +.|+| +++.++.. ..+..|.+||+.+++..... .
T Consensus 113 ~~~~~~~~--~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~--- 185 (396)
T 3c5m_A 113 EEQVIYTV--DEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q--- 185 (396)
T ss_dssp CEEEEEEC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E---
T ss_pred CcEEEEec--ccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec-c---
Confidence 65333322 2222222 45677 55554433 35678999999987754433 2
Q ss_pred CCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCceeeeeec-CCceEEEEECCCCCCeEEEEEecC---
Q 020107 194 HKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNETSVCL-GGGVWRIKHHPFIPGLVLAACMHN--- 263 (331)
Q Consensus 194 ~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~--- 263 (331)
+...+..+.|+|.++..|+..+.+ ..|.+||+... . ...+.... ...+..++|+|++..+++++...+
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 567789999999446666665543 35888887653 2 22211211 235788999999844444433222
Q ss_pred -cEEEEEEcCcccceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEeec---------------CCCeEEEEcCCC
Q 020107 264 -GFAVVKVGGEKAEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCSF---------------YDRLLRIWMPES 326 (331)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~---------------~d~~i~iW~~~~ 326 (331)
.+.+|++.......+..+.+ .. +.|+| ++ +++++++. .+..|++||+++
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg---------~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMPP----CS-HLMSNFDG---------SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEEECTTTCCEEEEEECCS----EE-EEEECSSS---------SEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred ceEEEEECCCCCeEEeeeCCC----CC-CCccCCCC---------ceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 25556554421222222222 22 88999 88 57776430 247899999987
Q ss_pred ccc
Q 020107 327 DCL 329 (331)
Q Consensus 327 ~~~ 329 (331)
+..
T Consensus 330 ~~~ 332 (396)
T 3c5m_A 330 KSA 332 (396)
T ss_dssp TBC
T ss_pred Cce
Confidence 653
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=5.9e-13 Score=106.96 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=156.0
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec-CcEeEEEEcCCCCCCCCeEEEEcC-------CccEEE
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT-AGIFDIKWSPVGGNAGPFLAQADA-------DGGLLR 96 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~-------dg~iiw 96 (331)
++|++++ .++.|++||.++++ .+..+ ..+. ..+.++.++|+ +++|++... +|.++|
T Consensus 6 ~~lv~~~----------~~~~v~~~d~~tG~-~~w~~-~~~~~~~~~~~~~~pd----G~ilvs~~~~V~~~d~~G~~~W 69 (276)
T 3no2_A 6 HLLVGGS----------GWNKIAIINKDTKE-IVWEY-PLEKGWECNSVAATKA----GEILFSYSKGAKMITRDGRELW 69 (276)
T ss_dssp EEEEECT----------TCSEEEEEETTTTE-EEEEE-ECCTTCCCCEEEECTT----SCEEEECBSEEEEECTTSCEEE
T ss_pred cEEEeeC----------CCCEEEEEECCCCe-EEEEe-CCCccCCCcCeEECCC----CCEEEeCCCCEEEECCCCCEEE
Confidence 6888887 79999999997776 33333 3343 46899999999 888884321 233366
Q ss_pred ecCCCcccCccEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeee------cccceeEEEeeCCCCCcEEEEEc
Q 020107 97 DITGEKISSSMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWK------AHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 97 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
.+... ....+.++.+.++|+.+++.+. ++.|..+|. +++. +..+. .+......+++.+ +++++++..
T Consensus 70 ~~~~~--~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~--l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~ 143 (276)
T 3no2_A 70 NIAAP--AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV--LSKTEFETGIERPHAQFRQINKNK-KGNYLVPLF 143 (276)
T ss_dssp EEECC--TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE--EEEEEECCSCSSGGGSCSCCEECT-TSCEEEEET
T ss_pred EEcCC--CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE--EEEEeccCCCCcccccccCceECC-CCCEEEEec
Confidence 66542 1245778899999999999887 888888886 4443 33322 1222345566777 789999999
Q ss_pred CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecC------Cce
Q 020107 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLG------GGV 243 (331)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~v 243 (331)
.++.|..||.. ++.+..+.. ...+.++...+ ++++++++..++.|..+|..++ +.+.+. .... ..+
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG-~~~w~~-~~~~~~~~~l~~~ 215 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKL----SGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESN-RIVRRV-NANDIEGVQLFFV 215 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEEC----SSCCCEEEECT-TSCEEEECBTTSEEEEECTTTC-CEEEEE-EGGGSBSCCCSEE
T ss_pred CCCEEEEECCC-CCEEEEEEC----CCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCC-cEEEEe-cCCCCCCcccccc
Confidence 99999999998 877777665 23456677788 8999999988889999999876 444441 2221 237
Q ss_pred EEEEECCCCCCeEEEEEecC---------cEEEEEEcCcccceeEEeecC
Q 020107 244 WRIKHHPFIPGLVLAACMHN---------GFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~h 284 (331)
..++..+++ .++++ ...+ ..+++.+... ++.+-++..+
T Consensus 216 ~~~~~~~~G-~i~v~-~~~g~~~~~~~~~~~~~~~~~~~-g~~~W~~~~~ 262 (276)
T 3no2_A 216 AQLFPLQNG-GLYIC-NWQGHDREAGKGKHPQLVEIDSE-GKVVWQLNDK 262 (276)
T ss_dssp EEEEECTTS-CEEEE-EECTTCTTGGGSCCCSEEEECTT-SBEEEEECCT
T ss_pred ccceEcCCC-CEEEE-eccCccccccccCCceEEEECCC-CCEEEEecCc
Confidence 788888885 44444 4322 2357887654 7777777654
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=8.4e-13 Score=109.91 Aligned_cols=233 Identities=9% Similarity=0.030 Sum_probs=144.2
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..+.|+|++ +.||..+..... ....|.+|++.+++ ...+...+ . +..++|+|+ ++.|+.++.
T Consensus 60 ~~~~~~~SpDg---~~la~~~~~~~~-----~~~~l~~~~~~~g~--~~~l~~~~-~-~~~~~wspd----g~~l~~~~~ 123 (347)
T 2gop_A 60 NATMPRISPDG---KKIAFMRANEEK-----KVSEIWVADLETLS--SKKILEAK-N-IRSLEWNED----SRKLLIVGF 123 (347)
T ss_dssp SCEEEEECTTS---SEEEEEEEETTT-----TEEEEEEEETTTTE--EEEEEEES-E-EEEEEECTT----SSEEEEEEE
T ss_pred cCCCeEECCCC---CEEEEEEeccCC-----CcceEEEEECCCCc--eEEEEcCC-C-ccceeECCC----CCEEEEEEc
Confidence 45667888776 788877621000 12247777877654 33343333 3 999999999 888887763
Q ss_pred C---------------------------ccE-EEecCCCcc-cC---ccEEEEEEcCCCCeEEEEecCC-------eEEE
Q 020107 91 D---------------------------GGL-LRDITGEKI-SS---SMCLCLEWNPSATSITVGLSDG-------SVSI 131 (331)
Q Consensus 91 d---------------------------g~i-iw~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~~dg-------~i~i 131 (331)
+ ..+ +|++.+++. .. ..+..+.|+|++ .++++..++ ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 124 KRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp CCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred cCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccE
Confidence 2 234 788876654 10 156688999999 777775542 3445
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeEEEEEccCCCceeeeecccCCCcceEE-EE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKFSGWDIRESPFKLAFQNSKIHKMGVCC-IA 202 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~ 202 (331)
|.+.+++. ..+..+ ..+..+ +| +++.|+.++.+ ..|.+|| +++...... .+...+.. +.
T Consensus 203 ~~~d~~~~---~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~ 270 (347)
T 2gop_A 203 YIWEDGKE---EKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKI 270 (347)
T ss_dssp EEEETTEE---EEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEE
T ss_pred EEeCCCce---EEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccE
Confidence 54444433 223333 344444 88 66766665533 4688888 444332222 26677886 88
Q ss_pred EecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE-EEEEEcCcccceeEEe
Q 020107 203 SIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF-AVVKVGGEKAEVLETY 281 (331)
Q Consensus 203 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 281 (331)
|+ ++ ++++++.++.+++| +.+ .+. .. ...+.+.|..++|+| ..+++.+.++.. .+|.+. ++ ...+
T Consensus 271 ~s--dg-~~~~~~~~~~~~l~-~~~-g~~-~~-~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~---g~-~~~l 336 (347)
T 2gop_A 271 KD--GK-VYFTLFEEGSVNLY-IWD-GEI-KP-IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD---GE-EKQL 336 (347)
T ss_dssp ET--TE-EEEEEEETTEEEEE-EES-SSE-EE-EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES---SS-EEEC
T ss_pred Ec--Cc-EEEEEecCCcEEEE-EcC-Cce-EE-EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC---Cc-EEEe
Confidence 87 56 88999999999999 884 333 32 345678899999999 466666665554 677765 22 3445
Q ss_pred ecCCc
Q 020107 282 AKHGS 286 (331)
Q Consensus 282 ~~h~~ 286 (331)
..|..
T Consensus 337 t~~n~ 341 (347)
T 2gop_A 337 TDYND 341 (347)
T ss_dssp CCTTS
T ss_pred ccccH
Confidence 55544
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2e-12 Score=118.06 Aligned_cols=237 Identities=8% Similarity=-0.029 Sum_probs=151.5
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+..++|+|++ ++||.+.... ++....|++||+.+++ ....... + ..+..++|+|+ ++.|+.++.+
T Consensus 127 ~~~~~~SPDg---~~la~~~~~~-----G~~~~~i~v~d~~tg~-~~~~~~~-~-~~~~~~~wspD----g~~l~~~~~~ 191 (710)
T 2xdw_A 127 LRGYAFSEDG---EYFAYGLSAS-----GSDWVTIKFMKVDGAK-ELPDVLE-R-VKFSCMAWTHD----GKGMFYNAYP 191 (710)
T ss_dssp EEEEEECTTS---SEEEEEEEET-----TCSCEEEEEEETTTTE-EEEEEEE-E-ECSCCEEECTT----SSEEEEEECC
T ss_pred EEEEEECCCC---CEEEEEEcCC-----CCceEEEEEEECCCCC-CCccccc-C-cccceEEEEeC----CCEEEEEEEC
Confidence 4567777666 8888876210 0012289999999876 2222212 2 23678999999 8888888877
Q ss_pred cc----------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEec-----CCeEEEEEccc---
Q 020107 92 GG----------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLS-----DGSVSIVSVVE--- 136 (331)
Q Consensus 92 g~----------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~--- 136 (331)
+. + +|++.+.+. +...+..+.|+|+|++|+.++. +..|.+||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 65 5 888876542 1334678999999999887765 56899999986
Q ss_pred ---cceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-C---CeEEEEEccCCCc--eeeeecccCCC--cceEEEEEec
Q 020107 137 ---SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-D---CKFSGWDIRESPF--KLAFQNSKIHK--MGVCCIASIP 205 (331)
Q Consensus 137 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~--~~~~~~~~~~~--~~v~~~~~~~ 205 (331)
+.. ....+..+...+.. .|+| ++..|+..+. + +.|.+||+.++.. ...+.. |. ..+..+.|++
T Consensus 272 ~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 272 GITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP---EHEKDVLEWVACVR 345 (710)
T ss_dssp SSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCEEEEEEEET
T ss_pred ccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC---CCCCCeEEEEEEEc
Confidence 421 23445555555544 4777 4454444433 3 3699999987642 233332 33 3688899997
Q ss_pred CCCCEEEEEecCCeE--EEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcC
Q 020107 206 SDSNTLLTGSYDEYL--RVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGG 272 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 272 (331)
++.++++...|+.. .+||+.++ +.+.. +..+.+.+..+.++|+++.++++.++. ..+..|++..
T Consensus 346 -~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~-l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 346 -SNFLVLCYLHDVKNTLQLHDLATG-ALLKI-FPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTC-CEEEE-ECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred -CCEEEEEEEECCEEEEEEEECCCC-CEEEe-cCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 78888888889865 45565444 33333 344577889999999874444444332 4555565543
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=6.7e-13 Score=120.91 Aligned_cols=236 Identities=9% Similarity=-0.030 Sum_probs=151.5
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcE--eEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGI--FDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~ 89 (331)
+..++|+|++ ++||.+.... ++.+..|++||+.+++ .+. ..+...+ ..++|+|+ ++.|+.++
T Consensus 123 ~~~~~~SPDG---~~la~~~~~~-----G~~~~~i~v~dl~tg~-~~~---~~~~~~~~~~~~~wspD----g~~l~~~~ 186 (695)
T 2bkl_A 123 LGTWAVSWDG---KKVAFAQKPN-----AADEAVLHVIDVDSGE-WSK---VDVIEGGKYATPKWTPD----SKGFYYEW 186 (695)
T ss_dssp EEEEEECTTS---SEEEEEEEET-----TCSCCEEEEEETTTCC-BCS---SCCBSCCTTCCCEECTT----SSEEEEEE
T ss_pred EEEEEECCCC---CEEEEEECCC-----CCceEEEEEEECCCCC-CcC---CcccCcccccceEEecC----CCEEEEEE
Confidence 5567777666 8888765221 1245789999999876 220 1122223 68999999 88999888
Q ss_pred CCcc-------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCC----eEEEEEccccceee
Q 020107 90 ADGG-------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDG----SVSIVSVVESQLEV 141 (331)
Q Consensus 90 ~dg~-------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~ 141 (331)
.+.. + +|++.+... +...+..+.|+|+|++|+.++.++ .|.+++..+++.
T Consensus 187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-- 264 (695)
T 2bkl_A 187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-- 264 (695)
T ss_dssp CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--
Confidence 8765 5 888876542 124678999999999998887765 677776654443
Q ss_pred eeeeecccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCc--eeeeecccCC-CcceEEEEEecCCCCEEEEEe
Q 020107 142 LQQWKAHEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPF--KLAFQNSKIH-KMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~ 215 (331)
..+..+...+....+ + ++.+++... .++.|.+||+.++.. ...+.. .+ ...+..++++ ++.++++..
T Consensus 265 -~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~~~~~--~~~lv~~~~ 337 (695)
T 2bkl_A 265 -RLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLSVSIV--GGHLSLEYL 337 (695)
T ss_dssp -EEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEEEEEE--TTEEEEEEE
T ss_pred -EEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEEEEEE--CCEEEEEEE
Confidence 334445555566666 4 334555544 258999999987653 122222 13 4567888887 577889999
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEcC
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVGG 272 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 272 (331)
.|+..++|.+.........+.....+.+..+.++|+++.++++..+. ..+..|++..
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 99999998776322333331122366788889999874444444432 3455555544
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=5.3e-11 Score=96.70 Aligned_cols=270 Identities=6% Similarity=-0.029 Sum_probs=174.9
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-eeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-RMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+.+|.+.+.+ ++.++.. .++.|.+|+.. .. +..+. ......+.++++.++ +.++++..
T Consensus 21 ~p~~i~~d~~g---~l~v~~~----------~~~~v~~~~~~-~~--~~~~~~~~~~~~~~~i~~~~~----g~l~v~~~ 80 (300)
T 2qc5_A 21 GPYGITSSEDG---KVWFTQH----------KANKISSLDQS-GR--IKEFEVPTPDAKVMCLIVSSL----GDIWFTEN 80 (300)
T ss_dssp CEEEEEECTTS---CEEEEET----------TTTEEEEECTT-SC--EEEEECSSTTCCEEEEEECTT----SCEEEEET
T ss_pred CcceeeECCCC---CEEEEcC----------CCCeEEEECCC-Cc--eEEEECCCCCCcceeEEECCC----CCEEEEec
Confidence 55667666654 6666654 47899999987 33 33321 222356899999988 77777776
Q ss_pred CCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCC
Q 020107 90 ADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQP 162 (331)
Q Consensus 90 ~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (331)
.++.+ .++...... ....+.++++.++++..++...++.|..++.. ++... ..+......+..+++.+ ++
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~d~-~g 157 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPNKGSYPAFITLGS-DN 157 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT-TS
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCCCCCCceeEEECC-CC
Confidence 67777 666552111 13567899999999877777768899999987 54321 12232345688999998 66
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCc
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGG 242 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 242 (331)
+++++...++.|..+|. +++.. .+.. +.+...+..+++.+ ++++.++....+.|.+||. ++ .............
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLE-EYPL-PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TG-EISEYDIPTPNAR 231 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TC-CEEEEECSSTTCC
T ss_pred CEEEEecCCCeEEEECC-CCcEE-EeeC-CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CC-cEEEEECCCCCCC
Confidence 77777777889999998 45433 2332 22456789999999 8877777666788999998 32 2222111233466
Q ss_pred eEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee-EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 243 VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL-ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
+..+++.+++ .++++....+++..++. . ++.. ..+......+.++.+.+++ ++.++ + .. .|..
T Consensus 232 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~--~-g~~~~~~~~~~~~~~~~i~~~~~g---------~l~v~-~-~~-~i~~ 295 (300)
T 2qc5_A 232 PHAITAGKNS-EIWFTEWGANQIGRITN--D-NTIQEYQLQTENAEPHGITFGKDG---------SVWFA-L-KC-KIGK 295 (300)
T ss_dssp EEEEEECSTT-CEEEEETTTTEEEEECT--T-SCEEEEECCSTTCCCCCEEECTTS---------CEEEE-C-SS-EEEE
T ss_pred ceEEEECCCC-CEEEeccCCCeEEEECC--C-CcEEEEECCccCCccceeEeCCCC---------CEEEE-c-cC-ceEE
Confidence 8899999986 45555444577655554 2 3322 2223344568889999987 44444 4 44 6776
Q ss_pred EcCC
Q 020107 322 WMPE 325 (331)
Q Consensus 322 W~~~ 325 (331)
++++
T Consensus 296 ~~p~ 299 (300)
T 2qc5_A 296 LNLN 299 (300)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 6654
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.56 E-value=1.6e-10 Score=101.88 Aligned_cols=291 Identities=12% Similarity=0.041 Sum_probs=183.1
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEecc--CcccceEEeEeeecCcEeEEEEc----CCCCC
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVN--AEEKNLELLYRMDTAGIFDIKWS----PVGGN 80 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~ 80 (331)
.....+..+.++|++ +++.+++ .++.|.+||+. +.+ .+..+.. ......++|+ |+
T Consensus 194 ~~g~~p~~v~~SpDG---r~lyv~~----------~dg~V~viD~~~~t~~-~v~~i~~--G~~P~~ia~s~~~~pD--- 254 (567)
T 1qks_A 194 DTGYAVHISRLSASG---RYLFVIG----------RDGKVNMIDLWMKEPT-TVAEIKI--GSEARSIETSKMEGWE--- 254 (567)
T ss_dssp ECSSCEEEEEECTTS---CEEEEEE----------TTSEEEEEETTSSSCC-EEEEEEC--CSEEEEEEECCSTTCT---
T ss_pred eCCCCccceEECCCC---CEEEEEc----------CCCeEEEEECCCCCCc-EeEEEec--CCCCceeEEccccCCC---
Confidence 344455678888776 7888887 68999999995 433 3443322 2346799999 68
Q ss_pred CCCeEEEEcCC-ccE-EEecCCCccc-----------------CccEEEEEEcCCCCeE-EEEecCCeEEEEEcccccee
Q 020107 81 AGPFLAQADAD-GGL-LRDITGEKIS-----------------SSMCLCLEWNPSATSI-TVGLSDGSVSIVSVVESQLE 140 (331)
Q Consensus 81 ~~~~l~~~~~d-g~i-iw~~~~~~~~-----------------~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~ 140 (331)
++++++++.. +.+ ++|..+.+.. ...+..+..++++..+ +....+|.|.++|....+..
T Consensus 255 -Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~ 333 (567)
T 1qks_A 255 -DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 333 (567)
T ss_dssp -TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence 8888877665 666 7776654321 1256778888876654 44455799999998765433
Q ss_pred eeeeeecccceeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEe-c
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGS-Y 216 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~-~ 216 (331)
.+..+. .......+.|+| +++++ ++...++.|.++|+.+++....+.. ...|.+.-..+ ++|..+..++++. .
T Consensus 334 ~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 334 KTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG 410 (567)
T ss_dssp EEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCC
Confidence 333333 334567889999 55555 5555789999999999876555543 12354322222 5772245555554 4
Q ss_pred CCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCCCeEEEEE-e-----cCcEEEEEEcCc--cc--ceeEE
Q 020107 217 DEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-M-----HNGFAVVKVGGE--KA--EVLET 280 (331)
Q Consensus 217 d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~--~~--~~~~~ 280 (331)
++.|.++|....+ +.+.. .......-..+..+|+++.+++... . .+.+.++++... .+ ..+..
T Consensus 411 ~~~Vsvid~~~~~~~~~~~kvv~~-i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~ 489 (567)
T 1qks_A 411 DDSVALIGTDPEGHPDNAWKILDS-FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 489 (567)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEE-EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred CCeEEEecCCCCCCccccCEEEEE-EecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence 6899999998732 22222 2222333355788999744444331 1 458899998765 11 11223
Q ss_pred ee--------cCCcceeeeeecCCCCcccccccCcEEEEeec---CCCeEEEEcCCCccc
Q 020107 281 YA--------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF---YDRLLRIWMPESDCL 329 (331)
Q Consensus 281 ~~--------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---~d~~i~iW~~~~~~~ 329 (331)
+. .-...+..+.|+|++. .+++|... .++.|.++|.++..+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~G~--------~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 490 LPIAEWAGITEGQPRVVQGEFNKDGT--------EVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp ECHHHHHTCCSSCCEEEEEEECTTSS--------EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred eccccccccCCCCcceEeeeECCCCC--------EEEEEeecCCCCCCcEEEEECCCceE
Confidence 32 1235788999999995 45555320 279999999988754
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=4.2e-11 Score=100.34 Aligned_cols=257 Identities=10% Similarity=-0.049 Sum_probs=159.1
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccC--------
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISS-------- 105 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~-------- 105 (331)
.|.++|..+.+ .+..+..+ ..+ .++++|+ ++.++++.. ++.+ ++|..+.+...
T Consensus 48 ~v~v~D~~t~~-~~~~i~~g-~~p--~i~~spD----g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~ 119 (373)
T 2mad_H 48 QQWVLDAGSGS-ILGHVNGG-FLP--NPVAAHS----GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred EEEEEECCCCe-EEEEecCC-CCC--CeEECCC----CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc
Confidence 88999998775 33333222 222 9999999 888888862 4566 88887643311
Q ss_pred -----ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 106 -----SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 106 -----~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
.....+.|+|+|++|+++.. ++.|.++| .+++. +.. +.. .. ++.+.|.....+++.+.||.+.++
T Consensus 120 ~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~v 192 (373)
T 2mad_H 120 RFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKT 192 (373)
T ss_pred ccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEE
Confidence 12347899999999998874 58899999 88764 444 432 11 244455455677788889999999
Q ss_pred EccCCCceeeeecc--cCCCcc-eEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee----------cCCceE
Q 020107 178 DIRESPFKLAFQNS--KIHKMG-VCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC----------LGGGVW 244 (331)
Q Consensus 178 d~~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~v~ 244 (331)
|. +++........ .....+ .....+.+ ++..++..+..+.+.+.|+......+...+.. ......
T Consensus 193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 270 (373)
T 2mad_H 193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence 99 77654222100 001222 22345666 44444444467899999987542221111110 122344
Q ss_pred EEEECCCCCCeEEEEEe---------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecC
Q 020107 245 RIKHHPFIPGLVLAACM---------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFY 315 (331)
Q Consensus 245 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~ 315 (331)
.+.++|+++.++++... .+.+.+++... .+.+.++.. .....+++|+|++. .+++++...
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--~~vv~~i~~-g~~p~~i~~s~Dg~--------~~l~v~~~~ 339 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQTSSQISL-GHDVDAISVAQDGG--------PDLYALSAG 339 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--CEEEEEEEC-CCCcCeEEECCCCC--------eEEEEEcCC
Confidence 57889988444444321 23555555544 577777753 33578999999982 266666524
Q ss_pred CCeEEEEcCCCccc
Q 020107 316 DRLLRIWMPESDCL 329 (331)
Q Consensus 316 d~~i~iW~~~~~~~ 329 (331)
++.|.++|++++..
T Consensus 340 ~~~V~ViD~~t~~v 353 (373)
T 2mad_H 340 TEVLHIYDAGAGDQ 353 (373)
T ss_pred CCeEEEEECCCCCE
Confidence 89999999988753
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=8.5e-12 Score=102.23 Aligned_cols=236 Identities=11% Similarity=0.018 Sum_probs=151.9
Q ss_pred cCcEeEEEEcCCCCCCCCeEEE-------EcCCccE-EEecCCCcc----------cCccEEEEEEcCC-CCeEEEEecC
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQ-------ADADGGL-LRDITGEKI----------SSSMCLCLEWNPS-ATSITVGLSD 126 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~-------~~~dg~i-iw~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d 126 (331)
-....+++|.++ +.++++ ...++.+ .|+..+.+. +...+.+++++++ +++++ ++..
T Consensus 17 ~~~~~~~~~~~~----g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~ 91 (314)
T 1pjx_A 17 IPGAEGPVFDKN----GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMR 91 (314)
T ss_dssp CTTCEEEEECTT----SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETT
T ss_pred CCCccCceECCC----CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECC
Confidence 345689999988 777777 4566777 888665443 2256789999999 65444 4444
Q ss_pred CeEEEEEccccceeee-eeee--cccceeEEEeeCCCCCcEEEEEcCC---------------CeEEEEEccCCCceeee
Q 020107 127 GSVSIVSVVESQLEVL-QQWK--AHEFELWATSFDVHQPHMVYTGSDD---------------CKFSGWDIRESPFKLAF 188 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~ 188 (331)
+.|.+||.+ ++...+ .... .....+.++++++ +++++++...+ +.|..+|.. ++... +
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-V 167 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-E
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-e
Confidence 578999988 654222 1111 1123578999998 67777776554 567777765 44322 2
Q ss_pred ecccCCCcceEEEEEe----cCCCCEEEEE-ecCCeEEEEEecCCCCC----ceeeeeecC-CceEEEEECCCCCCeEEE
Q 020107 189 QNSKIHKMGVCCIASI----PSDSNTLLTG-SYDEYLRVWDVRSISKP----VNETSVCLG-GGVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~----~~~~~~l~~~-~~d~~i~iwd~~~~~~~----~~~~~~~~~-~~v~~~~~~~~~~~~~~~ 258 (331)
.. +......++++ | +++.++.+ ..++.|.+||+...... .......+. ..+..+++++++ .++++
T Consensus 168 ~~---~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~ 242 (314)
T 1pjx_A 168 DT---AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVA 242 (314)
T ss_dssp EE---EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEE
T ss_pred cc---CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEE
Confidence 22 33456889999 9 77655444 56789999998731121 111011222 567889999986 56655
Q ss_pred EEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 259 ACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
...++++..|+... ++.+..+..+...+.+++++|++. .++++.. .++.|..|+++.
T Consensus 243 ~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~i~~~~dg~--------~l~v~~~-~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEH-ENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSS--------EEEEEET-TTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCC--CcEeEEEeCCCCCceeEEECCCCC--------EEEEEeC-CCCeEEEEeCCC
Confidence 55667766665432 455566666667899999999982 2555555 678999999864
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=6.1e-12 Score=103.89 Aligned_cols=220 Identities=8% Similarity=-0.033 Sum_probs=146.4
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Cc------cEE
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SS------MCL 109 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~------~v~ 109 (331)
.++.|.+||..+.+ .+..+ . .......++++++ ++++++...++.+ ++|..+.+.. .. ...
T Consensus 62 ~~~~v~viD~~t~~-~~~~i-~-~~~~p~~i~~~~~----g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~ 134 (328)
T 3dsm_A 62 NSHVIFAIDINTFK-EVGRI-T-GFTSPRYIHFLSD----EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE 134 (328)
T ss_dssp GGTEEEEEETTTCC-EEEEE-E-CCSSEEEEEEEET----TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred CCCEEEEEECcccE-EEEEc-C-CCCCCcEEEEeCC----CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence 47899999999876 33444 2 3466889999998 7555554478888 8888775542 12 445
Q ss_pred EEEEcCCCCeEEEEe--cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC----------CeEEEE
Q 020107 110 CLEWNPSATSITVGL--SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD----------CKFSGW 177 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~i~ 177 (331)
.+++ ++..++++. .++.|.++|+.+++. +..+.. ......++++| ++++++++..+ +.|.++
T Consensus 135 ~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~--~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 135 QMVQ--YGKYVYVNCWSYQNRILKIDTETDKV--VDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CEEE--ETTEEEEEECTTCCEEEEEETTTTEE--EEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred eEEE--ECCEEEEEcCCCCCEEEEEECCCCeE--EEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEE
Confidence 6667 455555555 488999999998764 444443 23456888998 67777776654 789999
Q ss_pred EccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEE
Q 020107 178 DIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVL 257 (331)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (331)
|..+++....+.. + ....+..++++| +++.|++... .|.+||..+.+................++++|++..+++
T Consensus 209 d~~t~~v~~~~~~-~-~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 209 DAETFTVEKQFKF-K-LGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp ETTTTEEEEEEEC-C-TTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred ECCCCeEEEEEec-C-CCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence 9998876555554 1 134689999999 8888877654 899999987532111111112467899999996645555
Q ss_pred EE----EecCcEEEEEEcCcccceeEEee
Q 020107 258 AA----CMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 258 ~~----~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
+. ..++.+.+|+.. ++.+.++.
T Consensus 284 a~~~~y~~~~~V~v~d~~---g~~~~~i~ 309 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ---GKLIDEFY 309 (328)
T ss_dssp EECTTSSSEEEEEEECTT---CCEEEEEE
T ss_pred EcccccccCCEEEEECCC---CCEEEEEE
Confidence 54 345555555443 56666665
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=1.3e-11 Score=101.13 Aligned_cols=234 Identities=12% Similarity=0.056 Sum_probs=148.6
Q ss_pred cceeEeeecCCCCCcEEEE-------EeecccCCCCCCCCCcEEEEeccCcccceEEeEe----eecCcEeEEEEcCCCC
Q 020107 11 NADAVEFCPQDSYHHVLAA-------STYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR----MDTAGIFDIKWSPVGG 79 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~-------g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~ 79 (331)
.+.+++|.+.+ .++++ +. .++.|.+|+..+++ +..+.. ++...+.+++++++
T Consensus 19 ~~~~~~~~~~g---~l~~~~~~~~~~~~----------~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~~~~-- 81 (314)
T 1pjx_A 19 GAEGPVFDKNG---DFYIVAPEVEVNGK----------PAGEILRIDLKTGK--KTVICKPEVNGYGGIPAGCQCDRD-- 81 (314)
T ss_dssp TCEEEEECTTS---CEEEEETTCEETTE----------ECCEEEEECTTTCC--EEEEECCEETTEECCEEEEEECSS--
T ss_pred CccCceECCCC---CEEEEEeccccCCC----------CCCEEEEEeCCCCc--EEEEEecccCCCCCCCceEEEecC--
Confidence 45678887554 67776 34 48899999987664 333322 14467899999988
Q ss_pred CCCCeEEEEcCCccE-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEecC---------------CeEEEE
Q 020107 80 NAGPFLAQADADGGL-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLSD---------------GSVSIV 132 (331)
Q Consensus 80 ~~~~~l~~~~~dg~i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~ 132 (331)
+..|..++....+ .|+.. ++. ....+.+++++++++..++...+ +.|..+
T Consensus 82 --~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 82 --ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp --SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred --CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 3344444433345 77765 322 11347899999999877776655 567777
Q ss_pred EccccceeeeeeeecccceeEEEeeC----CCCCc-EEEEEcCCCeEEEEEcc-CCCc--eeeeecccCCC-cceEEEEE
Q 020107 133 SVVESQLEVLQQWKAHEFELWATSFD----VHQPH-MVYTGSDDCKFSGWDIR-ESPF--KLAFQNSKIHK-MGVCCIAS 203 (331)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~~~-~~v~~~~~ 203 (331)
+.. ++.. .+..+......++|+ | +++ ++++...++.|.+||+. .++. ...+.....+. ..+..+++
T Consensus 159 ~~~-g~~~---~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 159 TTD-GQMI---QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp CTT-SCEE---EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred CCC-CCEE---EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 765 4432 222233346788998 8 554 45555678999999987 3331 11222222233 56889999
Q ss_pred ecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 204 IPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 204 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
++ +++++++...++.|.+||.+++ +.+.. ...+...+.+++++|++..++++...++++..+++..
T Consensus 234 d~-~G~l~v~~~~~~~i~~~d~~~g-~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DE-DNNLLVANWGSSHIEVFGPDGG-QPKMR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BT-TCCEEEEEETTTEEEEECTTCB-SCSEE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CC-CCCEEEEEcCCCEEEEEcCCCC-cEeEE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99 8888888878899999998754 33333 2344577999999999622444444456766666543
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=1.4e-12 Score=108.66 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=127.0
Q ss_pred cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccc---------eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 104 SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQ---------LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 104 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
....+..+++++....+++|+.++ +.+|+++..+ .++.... .+.. |+.++| +++.|+++ .++.|
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l 108 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNAL 108 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcE
Confidence 445688899999999999998875 4559877543 2222223 3555 999999 55788888 88999
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCC
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPG 254 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 254 (331)
++||+++......... |...+.++.+.+ . .+++++.||.|.+||+..... . .+...|++++|+|++
T Consensus 109 ~v~dv~sl~~~~~~~~---~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~--~----~~~~~Vs~v~WSpkG-- 174 (388)
T 1xip_A 109 YSLDLEELSEFRTVTS---FEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST--K----QLAQNVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEESSSTTCEEEEEE---CSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE--E----EEEESEEEEEECSSE--
T ss_pred EEEEchhhhccCccce---eecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc--c----cccCCceEEEEcCCc--
Confidence 9999998765555554 777888887765 2 388899999999999997532 1 245689999999994
Q ss_pred eEEEEEecCcEEEEEEcCcccceeEEe------e---cCCcceeeeeecCCC
Q 020107 255 LVLAACMHNGFAVVKVGGEKAEVLETY------A---KHGSLAYGADWQRGR 297 (331)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~h~~~v~~~~~~~~~ 297 (331)
++++..++.+++|+......+...++ . +|...|.++.|.+++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 56777889988997765321114455 2 377899999999987
No 201
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=1.1e-12 Score=109.36 Aligned_cols=167 Identities=9% Similarity=0.029 Sum_probs=126.3
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc----------------ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK----------------ISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
.++.+++++. ..++++|+.++.++|++...+ .... |+.++| +++.|+++ .++.|++
T Consensus 39 ~~nlLais~~----~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNS----KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETT----TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCC----CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 6899999999 889999999988888754322 1245 999999 88999998 8899999
Q ss_pred EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE
Q 020107 132 VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL 211 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 211 (331)
||+.+... ......+...+.++.+.+ . + +++++.||.|.+||+.++.... +...|+|++|+| ++ +
T Consensus 111 ~dv~sl~~--~~~~~~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp-kG--~ 175 (388)
T 1xip_A 111 LDLEELSE--FRTVTSFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN-SQ--L 175 (388)
T ss_dssp EESSSTTC--EEEEEECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS-SE--E
T ss_pred EEchhhhc--cCccceeecceeeEEecC-C-C-EEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC-Cc--e
Confidence 99987542 334455677788888775 2 3 8888999999999999776432 356899999999 77 7
Q ss_pred EEEecCCeEEEEEecCCCCC-ceeee-----e---ecCCceEEEEECCCCCCeEEE
Q 020107 212 LTGSYDEYLRVWDVRSISKP-VNETS-----V---CLGGGVWRIKHHPFIPGLVLA 258 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~-~~~~~-----~---~~~~~v~~~~~~~~~~~~~~~ 258 (331)
+.|..||++++|+....... ...+. . .|...|.+|+|.+++ .++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 88999999999988864210 22210 1 367889999999984 44444
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=6.2e-11 Score=96.25 Aligned_cols=232 Identities=9% Similarity=0.022 Sum_probs=159.1
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
...+.++++.++ +.++++...++.+ .|+.. ... ....+.++++++++...++...++.|..|+.. +
T Consensus 14 ~~~~~~i~~d~~----g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSDK----GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECTT----SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCccceEECCC----CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 356899999999 7777777667777 77766 322 23568899999999877777778999999986 3
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
+... ..+......+..+++.| ++.++++...++.|..||. +++. ..+.. ......+..+++.+ ++.++++...+
T Consensus 88 ~~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~ 161 (299)
T 2z2n_A 88 IIKE-YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-REYEL-PNKGSYPSFITLGS-DNALWFTENQN 161 (299)
T ss_dssp CEEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-EEEEC-SSTTCCEEEEEECT-TSCEEEEETTT
T ss_pred cEEE-EeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-EEecC-CCCCCCCceEEEcC-CCCEEEEeCCC
Confidence 3221 12222345688999998 7788887777889999998 4443 23322 22456789999999 88877777677
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-EeecCCcceeeeeecCC
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-TYAKHGSLAYGADWQRG 296 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~ 296 (331)
+.|..||. ++ +............+..+++.+++ .++++....+.+..++. . ++... ....+...+.++++.++
T Consensus 162 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~--g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 162 NAIGRITE-SG-DITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-S--GEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-T--CCEEEEECSSTTCCEEEEEECST
T ss_pred CEEEEEcC-CC-cEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-C--CcEEEEECCCCCCCceeEEECCC
Confidence 89999998 43 22221112334568899999985 45555445667666655 2 33222 23334567889999999
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+ +++++.. .++.|..|+..
T Consensus 236 g---------~l~v~~~-~~~~i~~~d~~ 254 (299)
T 2z2n_A 236 I---------DLWFTEW-GANKIGRLTSN 254 (299)
T ss_dssp T---------CEEEEET-TTTEEEEEETT
T ss_pred C---------CEEEecc-CCceEEEECCC
Confidence 8 5666665 67899999974
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=1.1e-11 Score=99.60 Aligned_cols=201 Identities=8% Similarity=-0.022 Sum_probs=138.4
Q ss_pred CCeEEEEcCCccE-EEecCCCcc------cC-ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecc-ccee
Q 020107 82 GPFLAQADADGGL-LRDITGEKI------SS-SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFEL 152 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~------~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v 152 (331)
+++|++++.++.+ +|+.++++. +. ..+.++.+.|+|+.++ +.++.|..||. +++. +..+..+ ...+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~--~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE--LWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE--EEEEECCTTCEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE--EEEEcCCCCccc
Confidence 5688888888888 777766543 11 3578899999999888 45788999999 6654 5556543 3468
Q ss_pred EEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeeeeccc---CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 153 WATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAFQNSK---IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
.++.+.| +++.+++.+. ++.|..+|. +++.+..+.... .+......+.+.+ +++++++...++.|..||.. +
T Consensus 80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-C
Confidence 8899998 7888888776 778888886 566555554311 1223455667788 99999999999999999987 5
Q ss_pred CCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC------cceeeeeecCCC
Q 020107 229 SKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG------SLAYGADWQRGR 297 (331)
Q Consensus 229 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~ 297 (331)
+.+.. ......+..+...+++ ..+++....+. ++.+...+++.+.++..+. ..+.++...+++
T Consensus 156 -~~~w~--~~~~~~~~~~~~~~~g-~~~v~~~~~~~--v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 156 -QLLNS--VKLSGTPFSSAFLDNG-DCLVACGDAHC--FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp -CEEEE--EECSSCCCEEEECTTS-CEEEECBTTSE--EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred -CEEEE--EECCCCccceeEcCCC-CEEEEeCCCCe--EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence 44444 3334566778888885 45544444444 5555554478888876432 236777888887
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=1.1e-10 Score=95.00 Aligned_cols=222 Identities=5% Similarity=-0.023 Sum_probs=142.3
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
......|+|... .++++.. .++.|+.|+..+.. .... .....+.+++++|+ ++++++ ..
T Consensus 14 ~~Egp~w~~~~~--~l~~~d~----------~~~~i~~~d~~~~~--~~~~--~~~~~~~~i~~~~d----G~l~v~-~~ 72 (297)
T 3g4e_A 14 CGESPVWEEVSN--SLLFVDI----------PAKKVCRWDSFTKQ--VQRV--TMDAPVSSVALRQS----GGYVAT-IG 72 (297)
T ss_dssp BEEEEEEETTTT--EEEEEET----------TTTEEEEEETTTCC--EEEE--ECSSCEEEEEEBTT----SSEEEE-ET
T ss_pred cccCCeEECCCC--EEEEEEC----------CCCEEEEEECCCCc--EEEE--eCCCceEEEEECCC----CCEEEE-EC
Confidence 345788888652 5666665 68899999998764 3222 23467999999999 775554 44
Q ss_pred CccEEEecCCCcc----------cCccEEEEEEcCCCCeEEEEecC---------CeEEEEEccc-cceeeeeeeecccc
Q 020107 91 DGGLLRDITGEKI----------SSSMCLCLEWNPSATSITVGLSD---------GSVSIVSVVE-SQLEVLQQWKAHEF 150 (331)
Q Consensus 91 dg~iiw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~-~~~~~~~~~~~~~~ 150 (331)
++..+++..+.+. ....+..++++|+|++.++.... ..-.+|.+.. ++. ..+.....
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---~~~~~~~~ 149 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV---KKYFDQVD 149 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE---EEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE---EEEeeccc
Confidence 4443777765432 12457889999999966654321 2234444432 222 12222334
Q ss_pred eeEEEeeCCCCCc-EEEEEcCCCeEEEEEcc--CCCce--eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107 151 ELWATSFDVHQPH-MVYTGSDDCKFSGWDIR--ESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 151 ~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~--~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~ 225 (331)
....++|+| +++ ++++.+.++.|.+||+. ++... ..+.....+...+..+++.+ ++++.++...++.|..||.
T Consensus 150 ~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 150 ISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp BEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECT
T ss_pred cccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcC
Confidence 567899999 555 55667778999999973 44321 22222122345688999999 8888888777889999999
Q ss_pred cCCCCCceeeeeecCCceEEEEEC-CCCCCeEEEEE
Q 020107 226 RSISKPVNETSVCLGGGVWRIKHH-PFIPGLVLAAC 260 (331)
Q Consensus 226 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~ 260 (331)
.++ +.+.. ...+...+++++|. |+++.+++++.
T Consensus 228 ~tG-~~~~~-i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 228 VTG-KRLQT-VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTC-CEEEE-EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCc-eEEEE-EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 865 44443 23445679999998 77644444443
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=6.6e-10 Score=90.33 Aligned_cols=219 Identities=8% Similarity=-0.069 Sum_probs=140.1
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccccee
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLE 140 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 140 (331)
..-..+..|+|+. +.++++...++.+ .|+..+... ....+.++++++++++++ +. ++.|.+||.++++..
T Consensus 12 ~~~~Egp~w~~~~---~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVS---NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTT---TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCC---CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEE
Confidence 3446688899963 5567777777788 888876543 256788999999999544 44 568999999887654
Q ss_pred eeeeeec--ccceeEEEeeCCCCCcEEEEEcCC---------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC
Q 020107 141 VLQQWKA--HEFELWATSFDVHQPHMVYTGSDD---------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN 209 (331)
Q Consensus 141 ~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 209 (331)
.+..... ....+..++++| +++++++.... ..-.+|.+........+.. +....+.++|+| +++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~---~~~~pngi~~sp-dg~ 161 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD---QVDISNGLDWSL-DHK 161 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE---EESBEEEEEECT-TSC
T ss_pred EEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee---ccccccceEEcC-CCC
Confidence 4333221 234578999998 66766654221 2234554443222222222 344578999999 877
Q ss_pred EE-EEEecCCeEEEEEec--CCCCCc-eeee---eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 210 TL-LTGSYDEYLRVWDVR--SISKPV-NETS---VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 210 ~l-~~~~~d~~i~iwd~~--~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
.| ++.+.++.|..||+. ++ ... ...+ ....+.+..+++.+++ .++++....+.+.. +...+++.+..+.
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~--~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIR--LDPVTGKRLQTVK 237 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEE--ECTTTCCEEEEEE
T ss_pred EEEEecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEE--EcCCCceEEEEEE
Confidence 55 555667899999984 32 211 1111 1234568899999996 55555544555444 4433367888888
Q ss_pred cCCcceeeeeec-CCCC
Q 020107 283 KHGSLAYGADWQ-RGRS 298 (331)
Q Consensus 283 ~h~~~v~~~~~~-~~~~ 298 (331)
.+...+++++|. |++.
T Consensus 238 ~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp CSSSBEEEEEEESGGGC
T ss_pred CCCCCceEEEEeCCCCC
Confidence 777789999998 7763
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=1.9e-10 Score=95.51 Aligned_cols=278 Identities=11% Similarity=0.018 Sum_probs=168.9
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc----------CC
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD----------AD 91 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~d 91 (331)
|+++.+.+....... .++.|.++|..+.+ .+..+..+. .+ . ++++|+ ++.+++++ .+
T Consensus 42 pd~~~vyV~~~~~~~-----~~~~V~ViD~~t~~-v~~~I~vG~-~P-~-va~spD----G~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 42 PDARRVYVNDPAHFA-----AVTQQFVIDGEAGR-VIGMIDGGF-LP-N-PVVADD----GSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCTTEEEEEECGGGC-----SSEEEEEEETTTTE-EEEEEEECS-SC-E-EEECTT----SSCEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCcccC-----CCCEEEEEECCCCe-EEEEEECCC-CC-c-EEECCC----CCEEEEEcccccccccCCCC
Confidence 555777666511000 16799999998876 444453332 23 3 999999 88887775 24
Q ss_pred ccE-EEecCCCcccC-------------ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 92 GGL-LRDITGEKISS-------------SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 92 g~i-iw~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+.+ +||..+.+... .....+.|+|+|++++++.. ++.|.++|+.+++. +..+.... . ..
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v--v~tI~v~g--~-~~ 183 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPD--C-YH 183 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCS--E-EE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--EEEEECCC--c-ce
Confidence 556 89988866421 12345899999999988864 68999999998865 55554211 1 12
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeee-cccCCCcceE-EEEEecCCCCEEEEEecCCeEEEEEecCCCCCc
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQ-NSKIHKMGVC-CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPV 232 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 232 (331)
..|.....+++.+.||.+.+.++.. ++...... .+..-..++. ...|.+.++++++ .+.+|.|.+.|+......+
T Consensus 184 -~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 184 -IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp -EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred -eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 2243556777888899999999876 44321111 1000112221 2355432665544 5558999999997642211
Q ss_pred eeeee----------ecCCceEEEEECCCCCCeEEEEEec-------CcEEEEEEcCcccceeEEeecCCcceeeeeecC
Q 020107 233 NETSV----------CLGGGVWRIKHHPFIPGLVLAACMH-------NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQR 295 (331)
Q Consensus 233 ~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 295 (331)
..... -..+....++++|++..++++.... ..-.+|-+...+.+.+.++.- ...++++++++
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~ 340 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ 340 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECS
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECC
Confidence 11010 0122344577788874444444321 123355555554677777763 23688999999
Q ss_pred CCCcccccccCcEEEE-eecCCCeEEEEcCCCccc
Q 020107 296 GRSSLEGKRKNSLVAT-CSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 296 ~~~~~~~~~~~~~l~s-~~~~d~~i~iW~~~~~~~ 329 (331)
++. .+|++ .. .++.|.++|..++..
T Consensus 341 D~~--------~~ly~tn~-~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 341 DEK--------PLLYALST-GDKTLYIHDAESGEE 366 (386)
T ss_dssp SSS--------CEEEEEET-TTTEEEEEETTTCCE
T ss_pred CCC--------eEEEEEcC-CCCeEEEEECCCCcE
Confidence 983 35554 45 699999999988754
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.47 E-value=8.1e-11 Score=100.00 Aligned_cols=232 Identities=10% Similarity=-0.057 Sum_probs=149.8
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..|++.|.+ +++++.. .++.|++||.++.. +..+... ..... ++|+|+ ++.|+++..
T Consensus 132 ~P~~la~d~~g---~lyv~d~----------~~~~I~~id~~~g~--~~~~~~~-~~~~~-ia~~~~----g~~l~~~d~ 190 (409)
T 3hrp_A 132 YMWGIAAVGNN---TVLAYQR----------DDPRVRLISVDDNK--VTTVHPG-FKGGK-PAVTKD----KQRVYSIGW 190 (409)
T ss_dssp CEEEEEECSTT---EEEEEET----------TTTEEEEEETTTTE--EEEEEET-CCBCB-CEECTT----SSEEEEEBS
T ss_pred CceEEEEeCCC---CEEEEec----------CCCcEEEEECCCCE--EEEeecc-CCCCc-eeEecC----CCcEEEEec
Confidence 45567776554 7666665 57899999998764 4444333 22334 999999 888888888
Q ss_pred Cc--cE-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee--eeccccee--E
Q 020107 91 DG--GL-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ--WKAHEFEL--W 153 (331)
Q Consensus 91 dg--~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~v--~ 153 (331)
++ .+ .++...... ....+.+++++|++..|+++..++.|+.||..++....+.. ..+....- .
T Consensus 191 ~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 191 EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 76 45 555443211 23456789999966666667778999999998765322211 11122222 2
Q ss_pred EEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc---C---------CCcceEEEEEecCCCCEEEEEe-cCCeE
Q 020107 154 ATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK---I---------HKMGVCCIASIPSDSNTLLTGS-YDEYL 220 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---------~~~~v~~~~~~~~~~~~l~~~~-~d~~i 220 (331)
.++|+|.++.++++-..++.|+.||.... ...+.... + .-.....++++| +++++++-. .++.|
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCL 347 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEE
Confidence 89999856777777788899999997643 22222200 0 013478999999 888888877 88999
Q ss_pred EEEEecCCCCCceeeeeec---------------CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 221 RVWDVRSISKPVNETSVCL---------------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 221 ~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
+.||+.++ . +.. ...+ -.....++++|++ .++++-..++.|+.+.+
T Consensus 348 ~~~~~~~G-~-v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDG-Y-VST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTT-E-EEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred EEEECCCC-E-EEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 99997654 2 222 2232 2357899999984 55555545556555443
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=1.1e-10 Score=107.22 Aligned_cols=239 Identities=12% Similarity=0.015 Sum_probs=144.6
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..++|+|++ ++||.+..... .+...|++||+.+++ .+.. ..+...+..++|+|+ . .|+.++.
T Consensus 164 ~~~~~~~SPDG---~~la~~~~~~G-----~e~~~i~v~dl~tg~-~~~~--~~~~~~~~~~~wspD----~-~l~~~~~ 227 (741)
T 1yr2_A 164 ALDAWAASDDG---RLLAYSVQDGG-----SDWRTVKFVGVADGK-PLAD--ELKWVKFSGLAWLGN----D-ALLYSRF 227 (741)
T ss_dssp EEEEEEECTTS---SEEEEEEEETT-----CSEEEEEEEETTTCC-EEEE--EEEEEESCCCEESTT----S-EEEEEEC
T ss_pred EEEeEEECCCC---CEEEEEEcCCC-----CceEEEEEEECCCCC-CCCc--cCCCceeccEEEECC----C-EEEEEEe
Confidence 34567777766 88888862100 012469999999876 2221 112222468899998 3 4444444
Q ss_pred Ccc--------------E-EEecCCCcc----------cCccEEEEEEcCCCCeEEEEecCC-----eEEEEEcccccee
Q 020107 91 DGG--------------L-LRDITGEKI----------SSSMCLCLEWNPSATSITVGLSDG-----SVSIVSVVESQLE 140 (331)
Q Consensus 91 dg~--------------i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 140 (331)
++. + +|++.+... +...+..+.|+|+|++|+..+.++ .|++||+.++...
T Consensus 228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp CCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence 432 4 788765542 122478899999999988877544 8999999876211
Q ss_pred eeeeeecccceeEEEeeCCCCCcEEEEEcC----CCeEEEEEccCCC-ceeeeecccCCCcceEEEEEecCCCCEEEEEe
Q 020107 141 VLQQWKAHEFELWATSFDVHQPHMVYTGSD----DCKFSGWDIRESP-FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
....+..+...+....+ | +++.|+..+. ++.|.+||+.++. ....+. +.+...+..+.+. ++.++++..
T Consensus 308 ~~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~--~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 308 PVTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV--PESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp CCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE--CCCSSEEEEEEEE--BTEEEEEEE
T ss_pred ccEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe--cCCCCeEEEEEEE--CCEEEEEEE
Confidence 02334444444444433 6 5565655554 4569999998752 222222 2255557777776 467888888
Q ss_pred cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec---CcEEEEEEc
Q 020107 216 YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH---NGFAVVKVG 271 (331)
Q Consensus 216 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 271 (331)
.|+..+||.+.........+.....+.+..+.++|+++.++++..+. ..+..|++.
T Consensus 382 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 382 HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 99988888776322333331223467789999999875555555443 344555543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=1.8e-10 Score=97.86 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=151.9
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEcCCCCeEEEEecCC--eEEEEEccccce
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWNPSATSITVGLSDG--SVSIVSVVESQL 139 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~ 139 (331)
....|+|+|+ ++++++...++.+ .|+..+.... ..... ++|+++++.|+++..++ .|.+++...+..
T Consensus 132 ~P~~la~d~~----g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGN----NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECST----TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCC----CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 5789999998 7777777777788 8888765431 12223 89999999999888866 788898876542
Q ss_pred e-eeeeeec-ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec--ccCCCcce-E-EEEEecCCCCEEEE
Q 020107 140 E-VLQQWKA-HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN--SKIHKMGV-C-CIASIPSDSNTLLT 213 (331)
Q Consensus 140 ~-~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~~~~l~~ 213 (331)
. .+..+.. ....+.+++++|.++. |+.+..++.|+.||..++.. ..+.. ..++...- . .++|+|.++.++++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 1 1111112 3456788999984444 44467789999999987653 23311 01112222 3 89999944666666
Q ss_pred EecCCeEEEEEecCCCCCceeeeeecC---------------CceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccce
Q 020107 214 GSYDEYLRVWDVRSISKPVNETSVCLG---------------GGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEV 277 (331)
Q Consensus 214 ~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 277 (331)
-..++.|+.||.... +.. ...+. .....++++|++ .++++-. ..+.++.|++.. +.
T Consensus 285 d~~~~~I~~~~~~g~---~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~--G~- 356 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE---CEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILD--GY- 356 (409)
T ss_dssp ETTTTEEEEECTTCC---EEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTT--TE-
T ss_pred eCCCCEEEEEecCCC---EEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCC--CE-
Confidence 667889999987642 222 12221 347899999996 4555554 556655555433 33
Q ss_pred eEEeecC---------------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 278 LETYAKH---------------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 278 ~~~~~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+.++.++ -....++++++++ .++++-. .+++|+.++++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g---------~lyVad~-~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG---------GYWIAEA-WGKAIRKYAVE 409 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS---------EEEEEES-TTCEEEEEEEC
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC---------CEEEEEC-CCCeEEEEEeC
Confidence 4444443 2357889999987 6777777 78899888753
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=4.7e-10 Score=91.07 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=157.3
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES 137 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 137 (331)
...+.++.+.++ +.+.++...++.+ .++.. .+. ....+.++++.++++..++...++.|..+|.. +
T Consensus 19 ~~~p~~i~~d~~----g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSED----GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECTT----SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECCC----CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 346889999998 7888877777777 77766 322 12568899999999877776668899999987 5
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
+.. ..........+..+++.+ ++.++++...++.|..+|.. ++.. .+.. +.....+..+++.+ ++++.++...+
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~ 166 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIY-EYDL-PNKGSYPAFITLGS-DNALWFTENQN 166 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEE-EEEC-SSTTCCEEEEEECT-TSSEEEEETTT
T ss_pred CeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEE-EccC-CCCCCCceeEEECC-CCCEEEEecCC
Confidence 432 122222345688999997 77888777778899999987 5432 3322 22456789999999 88877666667
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE-EeecCCcceeeeeecCC
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE-TYAKHGSLAYGADWQRG 296 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~ 296 (331)
+.|..+|. ++ .............+..+++.+++ .++++....+.+..++. . ++... ....+...+.++++.++
T Consensus 167 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~--~-g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 167 NSIGRITN-TG-KLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT--T-GEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp TEEEEECT-TC-CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT--T-CCEEEEECSSTTCCEEEEEECST
T ss_pred CeEEEECC-CC-cEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC--C-CcEEEEECCCCCCCceEEEECCC
Confidence 88999998 32 22221111234568899999985 55555444556555554 2 33322 23334567889999999
Q ss_pred CCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 297 RSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 297 ~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+ ++.++.. .++.|..|+..
T Consensus 241 g---------~l~v~~~-~~~~i~~~~~~ 259 (300)
T 2qc5_A 241 S---------EIWFTEW-GANQIGRITND 259 (300)
T ss_dssp T---------CEEEEET-TTTEEEEECTT
T ss_pred C---------CEEEecc-CCCeEEEECCC
Confidence 8 5666665 57899999984
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=9.1e-11 Score=99.10 Aligned_cols=256 Identities=13% Similarity=0.028 Sum_probs=162.8
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC----------CccE-EEecCCCcccC-------
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA----------DGGL-LRDITGEKISS------- 105 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----------dg~i-iw~~~~~~~~~------- 105 (331)
+.|.++|..+.+ .+..+..+. .+ .+.++|+ ++.|+++.. ++.+ ++|..+.+...
T Consensus 99 ~~VsVID~~t~~-vv~~I~vG~-~P--gia~SpD----gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~ 170 (426)
T 3c75_H 99 TQQFVIDGSTGR-ILGMTDGGF-LP--HPVAAED----GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA 170 (426)
T ss_dssp EEEEEEETTTTE-EEEEEEECS-SC--EEEECTT----SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CeEEEEECCCCE-EEEEEECCC-CC--ceEECCC----CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc
Confidence 799999999876 444443332 33 8999999 888887763 4566 88887765421
Q ss_pred ------ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 106 ------SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 106 ------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
.....+.|+|++++++++.. ++.|.++|+.+.+. +..+.... . ....|.....+++.+.||.+.+.
T Consensus 171 ~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv--v~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 171 PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF--DRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCS-E---EEEEEEETTEEEEEETTSSEEEE
T ss_pred cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE--EEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEE
Confidence 12346789999999999874 58899999998765 44554221 1 22334344666777788888888
Q ss_pred EccCCCcee----eeecccCCCcce-EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee----------ecCCc
Q 020107 178 DIRESPFKL----AFQNSKIHKMGV-CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV----------CLGGG 242 (331)
Q Consensus 178 d~~~~~~~~----~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~ 242 (331)
++.+++... .+.. ...++ ..+.+.+ ++..++.....+.+.+.|.......+..... .....
T Consensus 245 ~~~~~~v~~~~~~~~~v---~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g 320 (426)
T 3c75_H 245 DFADGETKVTNTEVFHT---EDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG 320 (426)
T ss_dssp ECCTTCCEEEECCCCSC---TTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred ECCCCcEEEEeeeeecc---CCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence 885554331 1221 11121 2356788 6666666677899999998653211110000 01122
Q ss_pred eEEEEECCCCCCeEEEEEe---------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCc-EEEEe
Q 020107 243 VWRIKHHPFIPGLVLAACM---------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNS-LVATC 312 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~ 312 (331)
...++++|++..++++... .+.+.+++... .+.+.++.. .....++.|+|++ + ++++.
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--~kvv~~I~v-g~~P~gia~spDg---------~~~lyv~ 388 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--GERINKIEL-GHEIDSINVSQDA---------EPLLYAL 388 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEE-EEEECEEEECCSS---------SCEEEEE
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--CeEEEEEEC-CCCcCeEEEccCC---------CEEEEEE
Confidence 2347899998455554432 23556666555 577777753 2357899999998 5 66666
Q ss_pred ecCCCeEEEEcCCCccc
Q 020107 313 SFYDRLLRIWMPESDCL 329 (331)
Q Consensus 313 ~~~d~~i~iW~~~~~~~ 329 (331)
...++.|.++|+.++..
T Consensus 389 n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEE 405 (426)
T ss_dssp ETTTTEEEEEETTTCCE
T ss_pred cCCCCeEEEEECCCCCE
Confidence 52589999999988753
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.41 E-value=3e-10 Score=103.33 Aligned_cols=243 Identities=14% Similarity=0.066 Sum_probs=148.1
Q ss_pred ecCcEeEEEEcCCCCCCCCeEEEEc-CCc----cE-EEecCCCcccCc---c--EEEEEEcCCCCeEEEEecCC------
Q 020107 65 DTAGIFDIKWSPVGGNAGPFLAQAD-ADG----GL-LRDITGEKISSS---M--CLCLEWNPSATSITVGLSDG------ 127 (331)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~l~~~~-~dg----~i-iw~~~~~~~~~~---~--v~~~~~~~~~~~l~~~~~dg------ 127 (331)
|...+..++|||+ +++||-+. ..| .+ +|++.+++.... . ...++|+ |++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpD----g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLSFSRD----GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEEECTT----SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CcEEEEEEEECCC----CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4456889999999 88777433 233 34 999988775321 1 2467899 999999888774
Q ss_pred -------eEEEEEccccceeeeeee--ec-ccceeEEEeeCCCCCcEEE-EEc---CCCeEEEEEccCCC-ceeeeeccc
Q 020107 128 -------SVSIVSVVESQLEVLQQW--KA-HEFELWATSFDVHQPHMVY-TGS---DDCKFSGWDIRESP-FKLAFQNSK 192 (331)
Q Consensus 128 -------~i~i~d~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~-~~~~~~~~~ 192 (331)
.|++|++.++.......+ .. +...+..+.|+| ++++|+ +.. ....|+++|+.++. ....+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-- 278 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-- 278 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--
Confidence 399999987543222223 33 344577899999 666554 333 23589999998764 2334443
Q ss_pred CCCcceEEEEEecCCCCEEEEEecC---CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYD---EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
+....... +++..+.++++...+ +.|..+|+.+....-.+.+..+...+. .|++++ ..++....+++...+.
T Consensus 279 -~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 279 -DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGS-GYLFAEYMVDATARVE 353 (693)
T ss_dssp -SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEET-TEEEEEEEETTEEEEE
T ss_pred -CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEEC-CEEEEEEEECCeeEEE
Confidence 45555554 555244444444443 679999998753211122455665555 888887 5555555555432223
Q ss_pred EcCcccceeEEee-cCCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCCCcc
Q 020107 270 VGGEKAEVLETYA-KHGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPESDC 328 (331)
Q Consensus 270 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~~~~ 328 (331)
+++..+.....+. ...+.+..+.+++++. .++++.++ .-++|+.||++++.
T Consensus 354 ~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~--------~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 354 QFDYEGKRVREVALPGLGSVSGFNGKHDDP--------ALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EECTTSCEEEEECCSSSSEEEECCCCTTCS--------CEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEECCCCeeEEeecCCCceEEeeecCCCCC--------EEEEEecCCCCCCEEEEEECCCCe
Confidence 3332244444444 3455677888888874 45555441 12899999997764
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=3.1e-09 Score=87.54 Aligned_cols=213 Identities=8% Similarity=-0.062 Sum_probs=135.7
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeee
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 142 (331)
-.....|+|++ +.++++...++.+ .|+..+.+. ....+.++.|+++++++++. .+ .|.+||..+++...+
T Consensus 50 ~~egp~~~~~~---~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPAS---GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTT---TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCC---CEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 35678899973 4566666677777 888776543 24578899999998876654 44 499999987765333
Q ss_pred eeeec--ccceeEEEeeCCCCCcEEEEEcC------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 143 QQWKA--HEFELWATSFDVHQPHMVYTGSD------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 143 ~~~~~--~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
..... ....+.+++++| +++++++... .+.|..+| +++ ...+.. +......++|+| +++.++.+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~---~~~~~~~i~~s~-dg~~lyv~ 196 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFA---DISIPNSICFSP-DGTTGYFV 196 (326)
T ss_dssp ECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEE---EESSEEEEEECT-TSCEEEEE
T ss_pred eeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeC---CCcccCCeEEcC-CCCEEEEE
Confidence 22211 124688999998 6676655432 24555555 343 222222 234578899999 88766544
Q ss_pred -ecCCeEEEEEec--CC-CCCceeeee---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcc
Q 020107 215 -SYDEYLRVWDVR--SI-SKPVNETSV---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSL 287 (331)
Q Consensus 215 -~~d~~i~iwd~~--~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 287 (331)
+.++.|.+||+. ++ .......+. .....+..+++.+++ .++++....+++..|+. .++.+..+..+...
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~---~g~~~~~i~~~~~~ 272 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT---DGNHIARYEVPGKQ 272 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT---TCCEEEEEECSCSB
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC---CCCEEEEEECCCCC
Confidence 457899999986 32 111111111 134567889999986 55555544566555543 35667777777778
Q ss_pred eeeeeec-CCC
Q 020107 288 AYGADWQ-RGR 297 (331)
Q Consensus 288 v~~~~~~-~~~ 297 (331)
+++++|. +++
T Consensus 273 ~~~~af~g~d~ 283 (326)
T 2ghs_A 273 TTCPAFIGPDA 283 (326)
T ss_dssp EEEEEEESTTS
T ss_pred cEEEEEecCCC
Confidence 9999998 776
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=2.3e-09 Score=88.27 Aligned_cols=220 Identities=11% Similarity=0.019 Sum_probs=139.9
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
...+.|+|... .+++++. .++.|..|+.+++. ...+ .....+.++.|+|+ ++++++. .+
T Consensus 51 ~egp~~~~~~~--~l~~~d~----------~~~~i~~~d~~~~~--~~~~--~~~~~v~~i~~~~d----g~l~v~~-~~ 109 (326)
T 2ghs_A 51 GEGPTFDPASG--TAWWFNI----------LERELHELHLASGR--KTVH--ALPFMGSALAKISD----SKQLIAS-DD 109 (326)
T ss_dssp EEEEEEETTTT--EEEEEEG----------GGTEEEEEETTTTE--EEEE--ECSSCEEEEEEEET----TEEEEEE-TT
T ss_pred CcCCeEeCCCC--EEEEEEC----------CCCEEEEEECCCCc--EEEE--ECCCcceEEEEeCC----CeEEEEE-CC
Confidence 45778888642 5666665 57899999988764 3322 23467999999999 7776654 55
Q ss_pred ccEEEecCCCccc----------CccEEEEEEcCCCCeEEEEec------CCeEEEEEccccceeeeeeeecccceeEEE
Q 020107 92 GGLLRDITGEKIS----------SSMCLCLEWNPSATSITVGLS------DGSVSIVSVVESQLEVLQQWKAHEFELWAT 155 (331)
Q Consensus 92 g~iiw~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 155 (331)
+..+|+..+++.. ...+.++.++|+|++.++... .+.|..++ +++.. .+..+......+
T Consensus 110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~~~~~~~~~~~i 184 (326)
T 2ghs_A 110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---KLFADISIPNSI 184 (326)
T ss_dssp EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---EEEEEESSEEEE
T ss_pred CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---EeeCCCcccCCe
Confidence 5337777654421 235789999999987665432 24565565 44332 222233356789
Q ss_pred eeCCCCCcE-EEEEcCCCeEEEEEcc--CC-Cc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 156 SFDVHQPHM-VYTGSDDCKFSGWDIR--ES-PF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 156 ~~~~~~~~~-l~~~~~dg~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
+|+| +++. +++.+.++.|.+||+. ++ .. ...+.........+..+++.+ ++++.++...++.|..||.. +
T Consensus 185 ~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g- 260 (326)
T 2ghs_A 185 CFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-G- 260 (326)
T ss_dssp EECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-C-
T ss_pred EEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-C-
Confidence 9998 5554 4555667899999986 44 32 122222122345678899998 88877776667889999983 2
Q ss_pred CCceeeeeecCCceEEEEEC-CCCCCeEEEEEecC
Q 020107 230 KPVNETSVCLGGGVWRIKHH-PFIPGLVLAACMHN 263 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~ 263 (331)
+.+.. .......+++++|. |++ +.++++...+
T Consensus 261 ~~~~~-i~~~~~~~~~~af~g~d~-~~L~vt~~~~ 293 (326)
T 2ghs_A 261 NHIAR-YEVPGKQTTCPAFIGPDA-SRLLVTSARE 293 (326)
T ss_dssp CEEEE-EECSCSBEEEEEEESTTS-CEEEEEEBCT
T ss_pred CEEEE-EECCCCCcEEEEEecCCC-CEEEEEecCC
Confidence 33333 23445579999998 776 4444444433
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=4.4e-09 Score=85.78 Aligned_cols=231 Identities=10% Similarity=-0.000 Sum_probs=146.7
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCC-eEEEEcCCccE-EEecCCCc----ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGP-FLAQADADGGL-LRDITGEK----ISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i-iw~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
++.+.. .........|+|+ ++ ++++...++.+ .|+..... .+...+..++++++|+++++...++.|.+
T Consensus 37 ~~~l~~-~~~~~egp~~~~~----g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYD-QATWSEGPAWWEA----QRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEEC-CCSSEEEEEEEGG----GTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEec-CCcCccCCeEeCC----CCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 444433 3445788999999 66 67777777888 78764321 13456789999999997666666788999
Q ss_pred EEccccceeeeeeee-c-ccceeEEEeeCCCCCcEEEE----EcC-------------CCeEEEEEccCCCceeeeeccc
Q 020107 132 VSVVESQLEVLQQWK-A-HEFELWATSFDVHQPHMVYT----GSD-------------DCKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 132 ~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 192 (331)
|+.. ++...+.... + ....+..++++| ++.++++ |.. .+.|..+|..+++..... .
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-- 186 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-- 186 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--
Confidence 9986 5432222111 1 113467899998 7777776 332 356778887666643332 2
Q ss_pred CCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCCCCCcee---eeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSISKPVNE---TSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
......++|+| +++.|+.+... +.|.+||+.... +.. ......+....+++.+++ . +.++. .+
T Consensus 187 --~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G-~-lwv~~-~~ 258 (305)
T 3dr2_A 187 --LDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGG-W-LWSSS-GT 258 (305)
T ss_dssp --ESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTS-C-EEECC-SS
T ss_pred --CCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCC-C-EEEec-CC
Confidence 33567899999 88877777655 789999997642 211 011123445678999986 4 44443 45
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
++.+|+. .++.+..+..+. .+..++|.+++ +.|..++ .++..+
T Consensus 259 gv~~~~~---~g~~~~~~~~~~-~~~~~~f~~d~---------~~L~it~-~~~l~~ 301 (305)
T 3dr2_A 259 GVCVFDS---DGQLLGHIPTPG-TASNCTFDQAQ---------QRLFITG-GPCLWM 301 (305)
T ss_dssp EEEEECT---TSCEEEEEECSS-CCCEEEECTTS---------CEEEEEE-TTEEEE
T ss_pred cEEEECC---CCCEEEEEECCC-ceeEEEEeCCC---------CEEEEEc-CCeEEE
Confidence 6555443 366777776554 58899999887 4666665 454333
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=2.7e-09 Score=97.05 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=137.2
Q ss_pred ceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 12 ADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 12 ~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
+..++|+|++ ++||.+.... ++....|++||+.+++ .+..... ......++|+ + ++.|+.++.+
T Consensus 131 l~~~~~SpDg---~~lAy~~~~~-----G~~~~~i~v~dl~tg~-~~~~~~~--~~k~~~~~Ws-D----g~~l~y~~~~ 194 (693)
T 3iuj_A 131 LDQLSFSRDG---RILAYSLSLA-----GSDWREIHLMDVESKQ-PLETPLK--DVKFSGISWL-G----NEGFFYSSYD 194 (693)
T ss_dssp EEEEEECTTS---SEEEEEEECS-----SCCEEEEEEEETTTCS-EEEEEEE--EEESCCCEEE-T----TTEEEEEESS
T ss_pred EEEEEECCCC---CEEEEEEecC-----CCceEEEEEEECCCCC-CCccccC--CceeccEEEe-C----CCEEEEEEec
Confidence 4456677665 8888765211 1134689999999876 2222111 1113578999 8 7888887776
Q ss_pred cc-------------E-EEecCCCcc-----------cCccEEEEEEcCCCCeEEEEec----CCeEEEEEccccceeee
Q 020107 92 GG-------------L-LRDITGEKI-----------SSSMCLCLEWNPSATSITVGLS----DGSVSIVSVVESQLEVL 142 (331)
Q Consensus 92 g~-------------i-iw~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~ 142 (331)
.. + +|++.+... +......+.|+|++++|+.... ...|+++|+.++.. ..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~ 273 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PL 273 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CC
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ce
Confidence 43 3 777766432 1224678999999998765443 35899999977632 23
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCC---CeEEEEEccCCCc--eeeeecccCCCcceEEEEEecCCCCEEEEEec-
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDD---CKFSGWDIRESPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY- 216 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 216 (331)
..+..+....... |++.++.+++....+ +.|..+|+.++.. ...+.. |...+. .|++ +++.|+....
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~-~g~~lv~~~~~ 346 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHS-GSGYLFAEYMV 346 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEE-ETTEEEEEEEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEE-ECCEEEEEEEE
Confidence 3444455444444 555455566665544 6899999988754 133333 455554 8888 6766666554
Q ss_pred CC--eEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 217 DE--YLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 217 d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
++ .|++||+... ....+.....+.+..+.++|+++.+++...+
T Consensus 347 ~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 347 DATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp TTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred CCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 44 6888888742 2333223445667788888887555555443
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=2.5e-09 Score=88.78 Aligned_cols=241 Identities=10% Similarity=0.041 Sum_probs=146.2
Q ss_pred eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc--CCccE-EEecCCCcc------------cCccEEEEEEcCCCCeEEE
Q 020107 58 LELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD--ADGGL-LRDITGEKI------------SSSMCLCLEWNPSATSITV 122 (331)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i-iw~~~~~~~------------~~~~v~~~~~~~~~~~l~~ 122 (331)
++.+...+ ..+..++++|+ ++++++.. .++.. +|.+..++. +-..+..+++++++++.++
T Consensus 9 ~~~v~~~~-~~p~~va~~~~----g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 9 LEVVAELS-LAPGNITLTPD----GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp CEEEEEES-SCEEEEEECTT----SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred eEEEEEcC-CCcceEEECCC----CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 44444434 67899999999 88888864 23323 554432211 2356889999999876665
Q ss_pred Eec-----CCeEEEEEccccceeeeeeeec------ccceeEEEeeCCCCCcEEEEEc---CCCeEEEEEccCCCceeee
Q 020107 123 GLS-----DGSVSIVSVVESQLEVLQQWKA------HEFELWATSFDVHQPHMVYTGS---DDCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 123 ~~~-----dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~ 188 (331)
-.. ++.|.+||+.+++. +..+.. +...+..++++|.++..+++-. .++.|.+||+.+++....+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred cCCCCcCCCCeEEEEECCCCeE--EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 444 57899999988764 333321 2234688999874455556655 6789999999877643332
Q ss_pred ecc----c--------C--------------CCcceEEEEEecCCCCEEEEEecCC-eEEEEEecCCCC-C------cee
Q 020107 189 QNS----K--------I--------------HKMGVCCIASIPSDSNTLLTGSYDE-YLRVWDVRSISK-P------VNE 234 (331)
Q Consensus 189 ~~~----~--------~--------------~~~~v~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~-~------~~~ 234 (331)
... + + -...+..|+++| +++.|+.+..++ .+..++...... . ...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 110 0 0 012468899999 888888887666 454444321100 0 000
Q ss_pred -eeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEe
Q 020107 235 -TSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATC 312 (331)
Q Consensus 235 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 312 (331)
....+.+....+++++++ .++++....+.+.+|+... ++....... +....+++++.+++ .++++.
T Consensus 241 ~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~--G~~~~~~~~~~~~~p~~va~~~~g---------~l~v~~ 308 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD--RAYKLLVTDEKLSWTDSFNFGSDG---------YLYFDC 308 (343)
T ss_dssp CEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT--TEEEEEEECGGGSCEEEEEECTTS---------CEEEEE
T ss_pred eEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCC--CCEEEEEECCceecCCeeEECCCC---------cEEEEe
Confidence 012344566789999986 6666666667777777522 332222222 24568899999987 566666
Q ss_pred ecCCCeE
Q 020107 313 SFYDRLL 319 (331)
Q Consensus 313 ~~~d~~i 319 (331)
+ ..+.+
T Consensus 309 ~-~~~~~ 314 (343)
T 2qe8_A 309 N-QLHHS 314 (343)
T ss_dssp C-CGGGS
T ss_pred C-ccccc
Confidence 5 34433
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=4.6e-09 Score=85.66 Aligned_cols=216 Identities=9% Similarity=0.001 Sum_probs=135.9
Q ss_pred ceeEeeecCCCCCc-EEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 12 ADAVEFCPQDSYHH-VLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 12 ~~~v~~~~~~~~~~-~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.....|.|.+ + +++++. .++.|..|+... . ...+ ..+...+..+++.++ ++++++...
T Consensus 47 ~egp~~~~~g---~~l~~~d~----------~~~~i~~~~~~g-~--~~~~-~~~~~~~~gl~~d~d----G~l~v~~~~ 105 (305)
T 3dr2_A 47 SEGPAWWEAQ---RTLVWSDL----------VGRRVLGWREDG-T--VDVL-LDATAFTNGNAVDAQ----QRLVHCEHG 105 (305)
T ss_dssp EEEEEEEGGG---TEEEEEET----------TTTEEEEEETTS-C--EEEE-EESCSCEEEEEECTT----SCEEEEETT
T ss_pred ccCCeEeCCC---CEEEEEEC----------CCCEEEEEeCCC-C--EEEE-eCCCCccceeeECCC----CCEEEEECC
Confidence 4567888766 5 666665 688999998743 2 3333 445667899999999 887776666
Q ss_pred CccE-EEecCCCcc----------cCccEEEEEEcCCCCeEEE----Eec-------------CCeEEEEEccccceeee
Q 020107 91 DGGL-LRDITGEKI----------SSSMCLCLEWNPSATSITV----GLS-------------DGSVSIVSVVESQLEVL 142 (331)
Q Consensus 91 dg~i-iw~~~~~~~----------~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~ 142 (331)
++.+ .++.. ++. ....+..+.++++|+..++ |.. .+.|..+|..+++...+
T Consensus 106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 106 RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 5666 77654 221 1123567999999997776 332 35678888766654332
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCc--eeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
. .......++|+| +++.|+.+... +.|.+||+..... ...+.. .....+..+++.+ ++++.++
T Consensus 185 ~----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~--~~~~~pdgi~~d~-~G~lwv~- 255 (305)
T 3dr2_A 185 A----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS--VPDGLPDGFCVDR-GGWLWSS- 255 (305)
T ss_dssp E----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC--CSSSCCCSEEECT-TSCEEEC-
T ss_pred e----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE--CCCCCCCeEEECC-CCCEEEe-
Confidence 2 233467899999 66666655544 7899999875431 111111 1233456788898 8885444
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
..+ .|.+||... +.+.. ......+.+++|.|++ +.+.+++. +++
T Consensus 256 ~~~-gv~~~~~~g--~~~~~--~~~~~~~~~~~f~~d~-~~L~it~~-~~l 299 (305)
T 3dr2_A 256 SGT-GVCVFDSDG--QLLGH--IPTPGTASNCTFDQAQ-QRLFITGG-PCL 299 (305)
T ss_dssp CSS-EEEEECTTS--CEEEE--EECSSCCCEEEECTTS-CEEEEEET-TEE
T ss_pred cCC-cEEEECCCC--CEEEE--EECCCceeEEEEeCCC-CEEEEEcC-CeE
Confidence 444 499999853 34443 2233368999999876 44444443 553
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=8.2e-10 Score=91.74 Aligned_cols=248 Identities=10% Similarity=-0.058 Sum_probs=153.9
Q ss_pred cEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc----------CCccE-EEecCCCcccC--------
Q 020107 45 SISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD----------ADGGL-LRDITGEKISS-------- 105 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i-iw~~~~~~~~~-------- 105 (331)
.|.++|..+.+ .+..+..+. .+ .+.++|+ ++.++++. .++.+ ++|+.+.+...
T Consensus 47 ~vsvID~~t~~-v~~~i~vG~-~P--~i~~spD----g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGV-TLGHSLGAF-LS--LAVAGHS----GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTE-EEEEEEECT-TC--EEEECTT----SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred eEEEEECCCCe-EEEEEeCCC-CC--ceEECCC----CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence 88899998876 455554444 34 7999999 88888886 35666 99988866421
Q ss_pred -----ccEEEEEEcCCCCeEEEEec--CCeEEE--EEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 106 -----SMCLCLEWNPSATSITVGLS--DGSVSI--VSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 106 -----~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
.....+.++|+|++++++.. +..|.+ +|+.+ +..+.... . ....|.....+++.+.|+.+.+
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSS-C---CCCEEEETTEEECCCCTTSCEE
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEE
Confidence 12457899999999999875 467888 88876 22232111 1 2233444456677778899888
Q ss_pred EEccC-----CCcee----eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-------e--
Q 020107 177 WDIRE-----SPFKL----AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-------C-- 238 (331)
Q Consensus 177 ~d~~~-----~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~-- 238 (331)
.|+.+ ++... .+.. ...+. . .+ ++..++..+. +.+.+.|.......+..... .
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~v---g~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNC---SSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCB---CSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred EECccccccCCeEEEEeeeeeeC---CCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 99876 32211 1111 23333 3 56 4555555555 89999998653211111000 0
Q ss_pred -cCCceEEEEECCCCCCeEEEEE---e-----cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEE
Q 020107 239 -LGGGVWRIKHHPFIPGLVLAAC---M-----HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLV 309 (331)
Q Consensus 239 -~~~~v~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 309 (331)
.......++++|++..++++.. . .++..++++.. .+.+.++.... ...+++|+|++. .++
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--~~vv~~i~vg~-~p~gi~~s~Dg~--------~l~ 329 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQTSGPISNGH-DSDAIIAAQDGA--------SDN 329 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCEEECCEEEE-EECEEEECCSSS--------CEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--CeEEEEEECCC-CcceEEECCCCC--------EEE
Confidence 0111222689999855554443 1 24556777766 46666665332 578999999984 456
Q ss_pred EEeecCCCeEEEEcCCCccc
Q 020107 310 ATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 310 ~s~~~~d~~i~iW~~~~~~~ 329 (331)
++....++.|.++|+.++..
T Consensus 330 va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEEETTTTEEEEEESSSCEE
T ss_pred EEccCCCCeEEEEECCCCcE
Confidence 66551289999999988753
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=1.1e-08 Score=84.96 Aligned_cols=271 Identities=11% Similarity=0.044 Sum_probs=155.6
Q ss_pred ecCcceeEeeecCCCCCcEEEEEe-ecccCCCCCCCCCcEEEEeccCcccceEEeEeee------cCcEeEEEEcCCCCC
Q 020107 8 LDGNADAVEFCPQDSYHHVLAAST-YTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD------TAGIFDIKWSPVGGN 80 (331)
Q Consensus 8 ~~~~~~~v~~~~~~~~~~~la~g~-~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 80 (331)
....+. +.++|++ ++|.++. +..... .+..++.|.+||..+.+ ....+.-+. ......++|+|+
T Consensus 77 vG~~P~-va~spDG---~~lyVan~~~~r~~-~G~~~~~VsviD~~t~~-v~~~I~v~~g~r~~~g~~P~~~a~spD--- 147 (386)
T 3sjl_D 77 GGFLPN-PVVADDG---SFIAHASTVFSRIA-RGERTDYVEVFDPVTLL-PTADIELPDAPRFLVGTYPWMTSLTPD--- 147 (386)
T ss_dssp ECSSCE-EEECTTS---SCEEEEEEEEEETT-EEEEEEEEEEECTTTCC-EEEEEEETTCCCCCBSCCGGGEEECTT---
T ss_pred CCCCCc-EEECCCC---CEEEEEcccccccc-cCCCCCEEEEEECCCCe-EEEEEECCCccccccCCCCceEEEcCC---
Confidence 333444 8888877 5554443 110000 00025789999999876 344442211 124567999999
Q ss_pred CCCeEEEEcC--CccE-EEecCCCcccCcc-E--EEEEEcCCCCeEEEEecCCeEEEEEccc-cceeeee--eeecccce
Q 020107 81 AGPFLAQADA--DGGL-LRDITGEKISSSM-C--LCLEWNPSATSITVGLSDGSVSIVSVVE-SQLEVLQ--QWKAHEFE 151 (331)
Q Consensus 81 ~~~~l~~~~~--dg~i-iw~~~~~~~~~~~-v--~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~~~~~~~~ 151 (331)
+++|++++. ++.+ ++|+.+.+..... + ....+....+.+++.+.||.+.+.++.. ++..... .+.....+
T Consensus 148 -Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 148 -GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp -SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred -CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 888888864 5677 9999887653110 0 1122322345677888899999999876 4431111 01111112
Q ss_pred eE-EEeeCCCCCcEEEEEcCCCeEEEEEccCCCc--eeeeecc-------cCCCcceEEEEEecCCCCEEEEEec-----
Q 020107 152 LW-ATSFDVHQPHMVYTGSDDCKFSGWDIRESPF--KLAFQNS-------KIHKMGVCCIASIPSDSNTLLTGSY----- 216 (331)
Q Consensus 152 v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~----- 216 (331)
+. ...|.+.++++++ .+.+|.|.+.|+.+... ...+..+ .-.......+.++| +++.++....
T Consensus 227 ~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEW 304 (386)
T ss_dssp BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTT
T ss_pred ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEecccccc
Confidence 21 2355432555544 55589999999976542 2222200 00122334577788 7777666542
Q ss_pred -----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEeecCCcceee
Q 020107 217 -----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETYAKHGSLAYG 290 (331)
Q Consensus 217 -----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 290 (331)
.+.|.++|+.+. +.+.. .....+++.|+++++++.+++++. .++.+.+++... ++.+.++..- +.-..
T Consensus 305 ~hk~~~~~V~viD~~t~-kv~~~--i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t--~k~~~~i~~~-~~p~~ 378 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTG-ERLAK--FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--GEELRSVNQL-GHGPQ 378 (386)
T ss_dssp CTTSCEEEEEEEETTTC-CEEEE--EEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT--CCEEEEECCC-CSSCC
T ss_pred ccCCCCCEEEEEECCCC-eEEEE--EECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC--CcEEEEecCC-CCCce
Confidence 257999999985 55555 334458899999999854666654 467788888765 5777777632 22233
Q ss_pred eeecCC
Q 020107 291 ADWQRG 296 (331)
Q Consensus 291 ~~~~~~ 296 (331)
+.+++|
T Consensus 379 l~~s~d 384 (386)
T 3sjl_D 379 VITTAD 384 (386)
T ss_dssp EEEECC
T ss_pred eEECCc
Confidence 444444
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.18 E-value=1.9e-07 Score=78.17 Aligned_cols=250 Identities=11% Similarity=-0.001 Sum_probs=146.9
Q ss_pred eEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee---e---cCcEeEEEEcCCCCCCCCeEEE
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM---D---TAGIFDIKWSPVGGNAGPFLAQ 87 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~l~~ 87 (331)
.+.++|++ ++|.++.........+..++.|.+||..+.+ ....+..+ . ......+.|+|+ +++|++
T Consensus 70 ~i~~spDg---~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-~~~~i~~~~~~~~~~g~~p~~~~~spD----G~~l~v 141 (373)
T 2mad_H 70 NPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPVTFL-PIADIELPDAPRFDVGPYSWMNANTPN----NADLLF 141 (373)
T ss_pred CeEECCCC---CEEEEEeccccccccCCCCCeEEEEECCCCc-EEEEEECCCccccccCCCccceEECCC----CCEEEE
Confidence 78888877 6777764100000000136789999998764 33333211 0 123458999999 899998
Q ss_pred EcC--CccE-EEecCCCcccCc--cE-EEEEEcCCCC-eEEEEecCCeEEEEEccccceeeeee---eecccce-eEEEe
Q 020107 88 ADA--DGGL-LRDITGEKISSS--MC-LCLEWNPSAT-SITVGLSDGSVSIVSVVESQLEVLQQ---WKAHEFE-LWATS 156 (331)
Q Consensus 88 ~~~--dg~i-iw~~~~~~~~~~--~v-~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~-v~~~~ 156 (331)
++. ++.+ ++| .+.+.... ++ .++.+.|+++ .+++.+.||.+.++|. +++...... ......+ .....
T Consensus 142 ~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 142 FQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred EecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 874 4667 888 77654211 11 2344556554 4566677999999999 765421111 0011112 12344
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCc--eeeeeccc-------CCCcceEEEEEecCCCCEEEEEec----------C
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPF--KLAFQNSK-------IHKMGVCCIASIPSDSNTLLTGSY----------D 217 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~----------d 217 (331)
+.+.++.+++. +..+.+.+.|+..... ...+.... ........+.++| +++.+++... +
T Consensus 220 ~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 220 QANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence 55534444444 4678999999975532 12221100 0123344578899 7777776543 3
Q ss_pred CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEE
Q 020107 218 EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLET 280 (331)
Q Consensus 218 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 280 (331)
+.|.++|..+. +.+.. .........++|+|+++..++++. .++.+.+++... .+.+.+
T Consensus 298 ~~V~VID~~t~-~vv~~--i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t--~~vv~~ 356 (373)
T 2mad_H 298 KEVTSVTGLVG-QTSSQ--ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA--GDQDQS 356 (373)
T ss_pred CeEEEEECCCC-EEEEE--EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC--CCEEee
Confidence 57999999884 55555 355567899999999843566665 478888888766 455555
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=1.9e-07 Score=78.29 Aligned_cols=202 Identities=7% Similarity=-0.000 Sum_probs=126.4
Q ss_pred EEc--CCCCeEEEEe-cCCeEEEEEcccc--ceeeeeeee-------cccceeEEEeeCCCCCcEEEEEcCC------Ce
Q 020107 112 EWN--PSATSITVGL-SDGSVSIVSVVES--QLEVLQQWK-------AHEFELWATSFDVHQPHMVYTGSDD------CK 173 (331)
Q Consensus 112 ~~~--~~~~~l~~~~-~dg~i~i~d~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------g~ 173 (331)
.++ +++++|++.+ .++.|.++|+.+. +++..+.+. .....-..+...| ++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 7788876655 4899999998743 333344442 1122455677788 66 66666555 78
Q ss_pred EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-------------------cCCeEEEEEecCCCCCcee
Q 020107 174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-------------------YDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~ 234 (331)
|.++|..+.+.+..+.........-+.+.|+| +++.+++.. .+.+|.+||+.+. +.+..
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence 99999999988777764221223345688899 888888884 3789999999974 44444
Q ss_pred eeee-cCCceEEEEE--CCCCCCeEEEEE-----ecCcEEEEEEcCcccceeEEe--ecC----------------Ccce
Q 020107 235 TSVC-LGGGVWRIKH--HPFIPGLVLAAC-----MHNGFAVVKVGGEKAEVLETY--AKH----------------GSLA 288 (331)
Q Consensus 235 ~~~~-~~~~v~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~h----------------~~~v 288 (331)
+..+ .......+.| +|+++..+++.- .++.+.+|.......+..+.+ ... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 2222 1134556666 999844444444 455655555443211222221 110 2356
Q ss_pred eeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 289 YGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.++.+++++ ++|..+.+..+.|.++|+.+
T Consensus 324 a~I~lS~DG---------rfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 324 TDIDISLDD---------KFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCEEECTTS---------CEEEEEETTTTEEEEEECSS
T ss_pred eEEEECCCC---------CEEEEEeCCCCEEEEEEecC
Confidence 789999999 55555544789999999863
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.11 E-value=9.8e-07 Score=70.27 Aligned_cols=239 Identities=8% Similarity=0.017 Sum_probs=139.3
Q ss_pred CCcEEEEeccCcccc---eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc------cCccEEEEE
Q 020107 43 NGSISLFNVNAEEKN---LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI------SSSMCLCLE 112 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~ 112 (331)
.+.|+.++++..... ...........+..++|.|++ +.++++-..++.+ .+++.+... .......++
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia 85 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD---KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIA 85 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT---TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEE
T ss_pred CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC---CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEE
Confidence 558999998765411 112222223467899999972 3344455556667 666655432 114568899
Q ss_pred EcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC--CCeEEEEEccCCCceeeee
Q 020107 113 WNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD--DCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 113 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 189 (331)
+++++..|+.+. ..+.|.+++++......+ ..........++++|.++.++++-.. .+.|..+++.... ...+.
T Consensus 86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~ 162 (267)
T 1npe_A 86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA 162 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE
T ss_pred EEecCCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE
Confidence 999777666655 478999999875432111 22122456889999844555555433 4788888886433 23332
Q ss_pred cccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVV 268 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
. ..-.....++++| ++..| ++-...+.|..+|+... . .... .........++.. +..++++....+.+ +
T Consensus 163 ~--~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~-~-~~~~-~~~~~~P~gi~~d--~~~lyva~~~~~~v--~ 232 (267)
T 1npe_A 163 Q--DNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQP-G-RRKV-LEGLQYPFAVTSY--GKNLYYTDWKTNSV--I 232 (267)
T ss_dssp C--TTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEE-E-EEEE-EECCCSEEEEEEE--TTEEEEEETTTTEE--E
T ss_pred E--CCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCC-c-eEEE-ecCCCCceEEEEe--CCEEEEEECCCCeE--E
Confidence 1 1234678999999 65554 55556789999998753 2 2221 2222334566654 32444443344554 4
Q ss_pred EEcCcccceeEEeecCC-cceeeeeecCCC
Q 020107 269 KVGGEKAEVLETYAKHG-SLAYGADWQRGR 297 (331)
Q Consensus 269 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~ 297 (331)
.+....++.+.++.... ....++++.|++
T Consensus 233 ~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 233 AMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred EEeCCCCCceEEEccccccccceeeecCcc
Confidence 44443367777765332 246788888875
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=6.5e-07 Score=75.16 Aligned_cols=211 Identities=10% Similarity=0.070 Sum_probs=131.7
Q ss_pred CCeE-EEEcCCccE-EEecCCCcc----c-------------CccEEEEEEcCCCCeEEEEecC------CeEEEEEccc
Q 020107 82 GPFL-AQADADGGL-LRDITGEKI----S-------------SSMCLCLEWNPSATSITVGLSD------GSVSIVSVVE 136 (331)
Q Consensus 82 ~~~l-~~~~~dg~i-iw~~~~~~~----~-------------~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 136 (331)
+++| +.+..++.| +.|+.+... + ......+...|++ .++++..+ |.|.++|.++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 4555 455666777 888865421 1 1123456788999 66665555 7899999998
Q ss_pred cceeeeeeeecc--c-ceeEEEeeCCCCCcEEEEEc-------------------CCCeEEEEEccCCCceeeeecccCC
Q 020107 137 SQLEVLQQWKAH--E-FELWATSFDVHQPHMVYTGS-------------------DDCKFSGWDIRESPFKLAFQNSKIH 194 (331)
Q Consensus 137 ~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~ 194 (331)
.+. +..+... . .-.+.+.|+| +.+.+++.. .+.+|.+||+.+++....+.... .
T Consensus 174 ~~v--~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~ 249 (462)
T 2ece_A 174 FEP--LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-E 249 (462)
T ss_dssp CCE--EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-T
T ss_pred CeE--EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-C
Confidence 755 5555422 1 2244678898 667777763 47899999999877666666511 1
Q ss_pred CcceEEEEE--ecCCCCEEEEEec------CCeEEEEEecCCCCCceeee--ee----------------cCCceEEEEE
Q 020107 195 KMGVCCIAS--IPSDSNTLLTGSY------DEYLRVWDVRSISKPVNETS--VC----------------LGGGVWRIKH 248 (331)
Q Consensus 195 ~~~v~~~~~--~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~--~~----------------~~~~v~~~~~ 248 (331)
......+.| +| ++++++++++ +++|.+|....+.-...... .. .......|.+
T Consensus 250 g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 250 NRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 234566666 99 8888777764 56887776654210000000 00 0245788999
Q ss_pred CCCCCCeEEEEEecCcEEEEEEcCc-ccceeEEeecCC--------------cceeeeeecCCCC
Q 020107 249 HPFIPGLVLAACMHNGFAVVKVGGE-KAEVLETYAKHG--------------SLAYGADWQRGRS 298 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~--------------~~v~~~~~~~~~~ 298 (331)
+|+++.++++.-..+.+.++++.+. ..+++..+.-.. +.-..+.++|++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence 9998555555556788999998643 245555554210 1246799999994
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=96.64 Aligned_cols=186 Identities=12% Similarity=-0.032 Sum_probs=96.7
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
++..+++++.||.|+.||..+++. +-.+.. ..+.+..+.. ++..+++++.|+.|+.||..+++....+.. +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~---~~ 79 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPF---TI 79 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC---CH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeec---cC
Confidence 577899999999999999999865 444443 3455554554 556778888999999999998876555543 21
Q ss_pred c-ceE-EEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 196 M-GVC-CIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 196 ~-~v~-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
. .+. +..+. .+..+++++.|+.|+.||.++++..... ..+. ...++|++ +.+++++.++.+..|+...
T Consensus 80 ~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~--~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~t- 149 (369)
T 2hz6_A 80 PELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL--SSAF----ADSLSPST-SLLYLGRTEYTITMYDTKT- 149 (369)
T ss_dssp HHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSS-
T ss_pred ccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe--cCCC----cccccccC-CEEEEEecCCEEEEEECCC-
Confidence 1 110 00111 3456788889999999999987443222 2221 23456654 6677777777766666554
Q ss_pred ccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 274 KAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 274 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++.+..+..+. .....+.++.. ....++.++ .||.|+.||..++..
T Consensus 150 -G~~~W~~~~~~--~~~~~~~~~~~------~~~~v~~~~-~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 150 -RELRWNATYFD--YAASLPEDDVD------YKMSHFVSN-GDGLVVTVDSESGDV 195 (369)
T ss_dssp -SSCCCEEEEEE--ECCBCCCCCTT------CCCCEEEEE-TSCEEEEECTTTCCE
T ss_pred -CCEEEeEeccc--ccCccccCCcc------ccceEEEEC-CCCEEEEEECCCCcE
Confidence 45444433211 12233333210 002466677 799999999988754
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=2.5e-07 Score=83.67 Aligned_cols=193 Identities=12% Similarity=0.145 Sum_probs=118.0
Q ss_pred CCeEEEEec------CCeEEEEEccccceeeeeeeeccc--------------------------------ceeEEEeeC
Q 020107 117 ATSITVGLS------DGSVSIVSVVESQLEVLQQWKAHE--------------------------------FELWATSFD 158 (331)
Q Consensus 117 ~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------------------------~~v~~~~~~ 158 (331)
+..+++++. +|.|+.+|.++++. +-.+.... .....++++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGER--KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcE--EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc
Confidence 345666654 68999999999865 32222111 011246777
Q ss_pred CCCCcEEEEEcCCC-------------------eEEEEEccCCCceeeeecccCCC-------cceEEEEEecCCC---C
Q 020107 159 VHQPHMVYTGSDDC-------------------KFSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSDS---N 209 (331)
Q Consensus 159 ~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~ 209 (331)
| +..+++.+..++ .|..+|.++++....++... |. ....-+.... ++ .
T Consensus 252 ~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~-dG~~~~ 328 (677)
T 1kb0_A 252 A-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKI-AGKPRK 328 (677)
T ss_dssp T-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEE-TTEEEE
T ss_pred C-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEeccc-CCcEee
Confidence 7 567777776654 59999999998777766521 21 2223334444 56 6
Q ss_pred EEEEEecCCeEEEEEecCCCCCceeeeeec----------CCce------------------------EEEEECCCCCCe
Q 020107 210 TLLTGSYDEYLRVWDVRSISKPVNETSVCL----------GGGV------------------------WRIKHHPFIPGL 255 (331)
Q Consensus 210 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~v------------------------~~~~~~~~~~~~ 255 (331)
.++.++.+|.+.++|.++++ ++....... ..++ ..++++|+. ++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~ 406 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GL 406 (677)
T ss_dssp EEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TE
T ss_pred EEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CE
Confidence 89999999999999999864 333211100 0011 146788876 56
Q ss_pred EEEEEec-------------------------------------------CcEEEEEEcCcccceeEEeecCCcceeeee
Q 020107 256 VLAACMH-------------------------------------------NGFAVVKVGGEKAEVLETYAKHGSLAYGAD 292 (331)
Q Consensus 256 ~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 292 (331)
+++...+ +.+..|++.. ++.+-.+. +...+.+..
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t--G~~~W~~~-~~~~~~~g~ 483 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA--QKAAWSVE-HVSPWNGGT 483 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT--TEEEEEEE-ESSSCCCCE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC--CcEEeecC-CCCCCcCcc
Confidence 6554432 3344455433 45555554 233445555
Q ss_pred ecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 293 WQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
+...+ .+++.++ .||.+++||..++..
T Consensus 484 ~~~~g---------~~v~~g~-~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 484 LTTAG---------NVVFQGT-ADGRLVAYHAATGEK 510 (677)
T ss_dssp EEETT---------TEEEEEC-TTSEEEEEETTTCCE
T ss_pred eEeCC---------CEEEEEC-CCCcEEEEECCCCce
Confidence 66665 5788888 899999999998864
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=3.2e-08 Score=82.07 Aligned_cols=207 Identities=9% Similarity=-0.026 Sum_probs=126.5
Q ss_pred ccEEEEEEcCCCCeEEEEec--CCeEEEEEccccceeeee----eeecccceeEEEeeCCCCCcEEEEEcC-----CCeE
Q 020107 106 SMCLCLEWNPSATSITVGLS--DGSVSIVSVVESQLEVLQ----QWKAHEFELWATSFDVHQPHMVYTGSD-----DCKF 174 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i 174 (331)
.....++++++++.+++... ++.+++|.+.+++..+.. ....+...+..+++++ +++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeE
Confidence 45788999999998887642 343555555444432111 1112446789999998 6666665433 5799
Q ss_pred EEEEccCCCceeeeeccc---CCCcceEEEEEecCCCCEEEEEe---cCCeEEEEEecCCCCCceeeeee----------
Q 020107 175 SGWDIRESPFKLAFQNSK---IHKMGVCCIASIPSDSNTLLTGS---YDEYLRVWDVRSISKPVNETSVC---------- 238 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~---------- 238 (331)
.+||+.+++....+.... .+...+..++++|.++..+++.. .++.|.+||+.+++ .... ...
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~-~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARV-LQGYPGIAPEDID 173 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEE-CTTCTTTSCCSCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEE-ecCCCcccccccc
Confidence 999999887555554311 12345789999983344555555 67899999987642 1111 111
Q ss_pred -------------------cCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc--------ccee--EEeecCCccee
Q 020107 239 -------------------LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK--------AEVL--ETYAKHGSLAY 289 (331)
Q Consensus 239 -------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~h~~~v~ 289 (331)
....+..|+|+|++ ..++.+...+. ++|.+.... .+.. ....++.....
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 01236889999997 44555544442 466654210 0100 01123344567
Q ss_pred eeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 290 GADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
++++++++ .++++.. .++.|.+|+.+++
T Consensus 252 gia~d~~G---------~l~va~~-~~~~V~~~d~~~G 279 (343)
T 2qe8_A 252 GISIDKDH---------NIYVGDL-AHSAIGVITSADR 279 (343)
T ss_dssp CEEECTTC---------CEEEEEG-GGTEEEEEETTTT
T ss_pred eEEECCCC---------CEEEEcc-CCCeEEEEECCCC
Confidence 89999988 6888877 8999999998444
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.01 E-value=7e-07 Score=80.94 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=50.7
Q ss_pred EEeeCCCCCcEEEEEcCCCe-------------------EEEEEccCCCceeeeecccCCC-------cceEEEEEecCC
Q 020107 154 ATSFDVHQPHMVYTGSDDCK-------------------FSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSD 207 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 207 (331)
.++++| +..+++.+..++. |..+|.++++.+..++.. .|. ..+....... +
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~-~ 315 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPI-D 315 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-T
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeecc-C
Confidence 467777 5678888887764 999999999877766641 121 1222223223 4
Q ss_pred CC---EEEEEecCCeEEEEEecCCC
Q 020107 208 SN---TLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 208 ~~---~l~~~~~d~~i~iwd~~~~~ 229 (331)
+. .++.++.+|.++++|.++++
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CcEEEEEEEECCCCeEEEEECCCCC
Confidence 54 78899999999999999864
No 229
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.01 E-value=1.9e-06 Score=70.62 Aligned_cols=238 Identities=11% Similarity=-0.002 Sum_probs=140.9
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-------------------------CccEEEEEEcCCCCeE
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-------------------------SSMCLCLEWNPSATSI 120 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-------------------------~~~v~~~~~~~~~~~l 120 (331)
....+++|.++ +.++.++..++.+ .|+..+.... ...+..+++.++...|
T Consensus 19 ~~p~~i~~d~~----g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 19 YAPNSFTFDST----NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp SCCCCEECCTT----CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CCceEEEEcCC----CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 34567888888 7778888888888 6666543221 1246889999744456
Q ss_pred EEEecCCeEEEEEccccceeeeeeee-c-ccceeEEEeeCCCCCcEEEEEcC-----------------CCeEEEEEccC
Q 020107 121 TVGLSDGSVSIVSVVESQLEVLQQWK-A-HEFELWATSFDVHQPHMVYTGSD-----------------DCKFSGWDIRE 181 (331)
Q Consensus 121 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~ 181 (331)
+++...+.|..+|..++....+.... + .......+++.+.++++.++-.. ++.|..+|..+
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 66655556888887765432222111 1 11246788888624455555322 36788888876
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEE-ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG-SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
++....... -.....|+++| +++.|+.+ ...+.|..|++..........+....+ ...+++.+++ .++++..
T Consensus 175 ~~~~~~~~~----~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-~l~va~~ 247 (322)
T 2fp8_A 175 KETTLLLKE----LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-HFWVSSS 247 (322)
T ss_dssp TEEEEEEEE----ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-CEEEEEE
T ss_pred CEEEEeccC----CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-CEEEEec
Confidence 653222221 23456799999 88765555 566899999987532111111122334 7889999986 5555554
Q ss_pred ec--------CcEEEEEEcCcccceeEEeecCC----cceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 261 MH--------NGFAVVKVGGEKAEVLETYAKHG----SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 261 ~~--------~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.. ..-.++.+... ++.+..+.... ..++.+.+ .++ +++++.. ..+.|..++++..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g---------~L~v~~~-~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDG---------LLYIGTL-FHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETT---------EEEEECS-SCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCC---------EEEEeec-CCCceEEEecccc
Confidence 41 12235555543 66666665432 34666666 344 5666666 7899999998754
No 230
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.98 E-value=2e-07 Score=78.80 Aligned_cols=260 Identities=12% Similarity=0.070 Sum_probs=150.7
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee------ecCcEeEEEEcCCCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM------DTAGIFDIKWSPVGG 79 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 79 (331)
+.....+ .|.++|++ ++|.++.+.......+..++.|.++|..+.+ ....+.-+ .......+.|+|+
T Consensus 115 I~vG~~P-gia~SpDg---k~lyVan~~~~~~~~G~~~~~VsviD~~t~~-vv~~I~v~g~~r~~~g~~P~~~~~spD-- 187 (426)
T 3c75_H 115 TDGGFLP-HPVAAEDG---SFFAQASTVFERIARGKRTDYVEVFDPVTFL-PIADIELPDAPRFLVGTYQWMNALTPD-- 187 (426)
T ss_dssp EEECSSC-EEEECTTS---SCEEEEEEEEEETTEEEEEEEEEEECTTTCC-EEEEEEETTCCCCCBSCCGGGSEECTT--
T ss_pred EECCCCC-ceEECCCC---CEEEEEeccccccccCCCCCEEEEEECCCCc-EEEEEECCCccccccCCCcceEEEcCC--
Confidence 3444455 88898887 5555554100000000026789999999876 34443221 0123567899999
Q ss_pred CCCCeEEEEcC--CccE-EEecCCCcccCc-cEE-EEEEcCCC-CeEEEEecCCeEEEEEccccceeee--eeeecccce
Q 020107 80 NAGPFLAQADA--DGGL-LRDITGEKISSS-MCL-CLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVL--QQWKAHEFE 151 (331)
Q Consensus 80 ~~~~~l~~~~~--dg~i-iw~~~~~~~~~~-~v~-~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~ 151 (331)
+++|+++.. ++.+ +.|+.+.+.... .+- +....|++ ..+++.+.||.+.+.+..+++.... ..+.....+
T Consensus 188 --Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p 265 (426)
T 3c75_H 188 --NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL 265 (426)
T ss_dssp --SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred --CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence 889988874 4567 888887664211 000 11233433 4456667788888888855543211 011111112
Q ss_pred e-EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce--eeeeccc-------CCCcceEEEEEecCCCCEEEEEec-----
Q 020107 152 L-WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK--LAFQNSK-------IHKMGVCCIASIPSDSNTLLTGSY----- 216 (331)
Q Consensus 152 v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~----- 216 (331)
+ ..+.+.+ ++..++..+..+.+.+.|....... ..+.... ........+.++| ++..+++...
T Consensus 266 ~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 266 LINHPAFSL-RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEW 343 (426)
T ss_dssp BCSCCEECT-TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTT
T ss_pred eeeEeeecC-CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccc
Confidence 1 2345677 5555555567889999999754321 1111100 0011222368899 7666665532
Q ss_pred -----CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE-ecCcEEEEEEcCcccceeEEe
Q 020107 217 -----DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC-MHNGFAVVKVGGEKAEVLETY 281 (331)
Q Consensus 217 -----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (331)
++.|.++|..+. +.+.. ..-......++|+|+++.+++++. .++.+.+++... .+.+.++
T Consensus 344 thk~~s~~VsVID~~T~-kvv~~--I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t--~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETG-ERINK--IELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT--GEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTC-CEEEE--EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--CCEEEEE
T ss_pred cccCCCCEEEEEECCCC-eEEEE--EECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC--CCEEEEe
Confidence 357999999985 55555 333446899999999843666666 578888888876 5777776
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=1.7e-07 Score=81.41 Aligned_cols=141 Identities=15% Similarity=0.074 Sum_probs=90.5
Q ss_pred CeEEEEEccC--CCc-eeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCC-----------Cceeee
Q 020107 172 CKFSGWDIRE--SPF-KLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISK-----------PVNETS 236 (331)
Q Consensus 172 g~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-----------~~~~~~ 236 (331)
+.|.+.|.++ ++. ...+.. .....++.++| |++++++++ .+.+|.++|+.+.+. ...+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-- 326 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-- 326 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--
T ss_pred CcEEEEeCcccCCceeEEEEec----CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--
Confidence 3488889887 443 334443 33567899999 888766655 688999999996421 1122
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc--------ccceeEEeecCCcc-----eeeeeecCCCCccccc
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE--------KAEVLETYAKHGSL-----AYGADWQRGRSSLEGK 303 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~ 303 (331)
..-......++|+|++ ..+++...++.+..|++... ..+.+.++..|-.+ -.++..+||+
T Consensus 327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG------ 399 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN------ 399 (595)
T ss_dssp CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS------
T ss_pred cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC------
Confidence 3455678999999997 66666667788888988651 13556666654332 2345678888
Q ss_pred ccCcEEEEeec--CCCeE----------EEEcCCCccc
Q 020107 304 RKNSLVATCSF--YDRLL----------RIWMPESDCL 329 (331)
Q Consensus 304 ~~~~~l~s~~~--~d~~i----------~iW~~~~~~~ 329 (331)
++|++... .|+.+ .++|++.+.+
T Consensus 400 ---k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 400 ---DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp ---SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ---CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 56666531 23321 7788865543
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=3.9e-08 Score=80.91 Aligned_cols=240 Identities=10% Similarity=0.038 Sum_probs=139.4
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcC
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNP 115 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~ 115 (331)
.++.|..|| .+++ ..-........+.++...++ + .|..++.+ + .++...... ...........
T Consensus 38 ~~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~~----g-~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~- 106 (330)
T 3hxj_A 38 SNKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGKD----G-TIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF- 106 (330)
T ss_dssp TTTTTEEEC-TTSC--EEESSCGGGEEEECCEETTT----T-EECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-
T ss_pred CCCEEEEEC-CCCc--EEEEEecCCCcccceEEecC----C-cEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-
Confidence 588899999 5554 21111222334566666655 3 34444444 5 555422111 11111122222
Q ss_pred CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC
Q 020107 116 SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK 195 (331)
Q Consensus 116 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 195 (331)
+..+.+++.++.|..+|.. ++. ..........+.++...+ ++. +..++.++.|..+|.. ++....+.. ..
T Consensus 107 -~~~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~---~~ 176 (330)
T 3hxj_A 107 -EDILYVTSMDGHLYAINTD-GTE--KWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKT---ND 176 (330)
T ss_dssp -TTEEEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEEC---SS
T ss_pred -CCEEEEEecCCEEEEEcCC-CCE--EEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEec---CC
Confidence 5668888889999999988 543 333333444455666654 444 6667788999999998 665555554 34
Q ss_pred cceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccc
Q 020107 196 MGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKA 275 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
..+.++...+ ++.+++ ++ +.|..+| .++ ..... .......+.++...++ +.+.+++.++++..+ .. .+
T Consensus 177 ~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g-~~~~~-~~~~~~~~~~~~~~~~--g~l~v~t~~~gl~~~--~~-~g 244 (330)
T 3hxj_A 177 AITSAASIGK-DGTIYF-GS--DKVYAIN-PDG-TEKWN-FYAGYWTVTRPAISED--GTIYVTSLDGHLYAI--NP-DG 244 (330)
T ss_dssp CCCSCCEECT-TCCEEE-ES--SSEEEEC-TTS-CEEEE-ECCSSCCCSCCEECTT--SCEEEEETTTEEEEE--CT-TS
T ss_pred CceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC-cEEEE-EccCCcceeceEECCC--CeEEEEcCCCeEEEE--CC-CC
Confidence 5566777766 665444 44 7799999 554 32322 1333456778888887 456666666775444 33 35
Q ss_pred ceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 276 EVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 276 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+.+..+......+..+...+++ .|..++ .+|.|..+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g----------~l~v~t-~~ggl~~~d~~ 283 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD----------TIYFGS-YDGHLYAINPD 283 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS----------CEEEEC-TTCEEEEECTT
T ss_pred CEeEEeeCCCCccccceEcCCC----------eEEEec-CCCCEEEECCC
Confidence 5555555444444555555554 566666 68889999863
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=2.9e-06 Score=67.56 Aligned_cols=200 Identities=8% Similarity=-0.061 Sum_probs=121.9
Q ss_pred cEEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 107 MCLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
.+..++|+++++.|+.+.. ++.|..+++..... ...+.........++++|.++.++++-...+.|.++++.....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~- 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR- 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-
Confidence 4568999997777666554 78999999876543 2222222246789999984556666667788999999875432
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEec
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
..+.. . .......++++| ++..|+.+.. .+.|..+++... ...............++++|++..++++....
T Consensus 114 ~~~~~-~-~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 114 RVLFD-T-GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EEEEC-S-SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEE-C-CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 22221 1 224678999999 5555554443 368888887642 22221112234578899999864455555555
Q ss_pred CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 263 NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
+.+..+++... .....+.+ .....+++.. .+ .++++.. ..+.|.+++.+++.
T Consensus 189 ~~I~~~~~~g~--~~~~~~~~-~~~P~gi~~d-~~---------~lyva~~-~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQP--GRRKVLEG-LQYPFAVTSY-GK---------NLYYTDW-KTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEE--EEEEEEEC-CCSEEEEEEE-TT---------EEEEEET-TTTEEEEEETTTTE
T ss_pred CEEEEEecCCC--ceEEEecC-CCCceEEEEe-CC---------EEEEEEC-CCCeEEEEeCCCCC
Confidence 66666665432 22222222 2233456554 22 4555555 67899999988764
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=92.92 Aligned_cols=183 Identities=12% Similarity=0.040 Sum_probs=89.0
Q ss_pred CCeEEEEcCCccE-EEecCCCccc----CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-eeE-E
Q 020107 82 GPFLAQADADGGL-LRDITGEKIS----SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-ELW-A 154 (331)
Q Consensus 82 ~~~l~~~~~dg~i-iw~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~v~-~ 154 (331)
+..+++++.||.+ .||..+++.. ...+.+..+..++..+++++.||.|+.||.++++. +..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccC
Confidence 5578888888887 6666555431 12333334445677788888999999999988754 223322211 111 1
Q ss_pred EeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCcee
Q 020107 155 TSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNE 234 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 234 (331)
..+. .+..+++++.++.|+.||.++++....+.. +. ...++| ++..+++++.|+.|+.||.++++.....
T Consensus 87 p~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 87 PCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp SCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 1111 335677888899999999999987665554 22 234567 7788999999999999999987443332
Q ss_pred eeeecCCceEEEEECCCC--CCeEEEEEecCcEEEEEEcCcccceeEEee
Q 020107 235 TSVCLGGGVWRIKHHPFI--PGLVLAACMHNGFAVVKVGGEKAEVLETYA 282 (331)
Q Consensus 235 ~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (331)
.... .....+.++. .+.+++++.++.+..|+... ++.+..+.
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~~~W~~~ 200 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GDVLWIQN 200 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CCEEEEEE
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCC--CcEEEEec
Confidence 1111 1222233321 14566666677766666544 56655554
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.92 E-value=3.1e-07 Score=83.22 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=114.3
Q ss_pred EEEEcCCCCeEEEEecCCe-------------------EEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCC-
Q 020107 110 CLEWNPSATSITVGLSDGS-------------------VSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQP- 162 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~- 162 (331)
.++++|+...++++..++. |..+|.++++..-......|. .++....... ++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 5778888899999988764 999999998753222222221 1111111111 33
Q ss_pred --cEEEEEcCCCeEEEEEccCCCceeeeeccc-------------------------CCCc-----------ceEEEEEe
Q 020107 163 --HMVYTGSDDCKFSGWDIRESPFKLAFQNSK-------------------------IHKM-----------GVCCIASI 204 (331)
Q Consensus 163 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~~-----------~v~~~~~~ 204 (331)
..++.++.+|.++++|.++++.+......+ .... .-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 378889999999999999998653222100 0000 01136788
Q ss_pred cCCCCEEEEEec---------------------------------------------CCeEEEEEecCCCCCceeeeeec
Q 020107 205 PSDSNTLLTGSY---------------------------------------------DEYLRVWDVRSISKPVNETSVCL 239 (331)
Q Consensus 205 ~~~~~~l~~~~~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~ 239 (331)
| +..++++... +|.|+.||+.+++ .+-+ ..+
T Consensus 398 p-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~-~~W~--~~~ 473 (689)
T 1yiq_A 398 P-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ-AAWE--VPY 473 (689)
T ss_dssp T-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE-EEEE--EEE
T ss_pred C-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC-eEeE--ccC
Confidence 8 6666666532 3779999999863 3333 333
Q ss_pred CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCCCcccccccCcEEEEee
Q 020107 240 GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 240 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
..++..-.+...+ ++++.++.++.++.|+... ++.+.+++...+ ...-+.|..++. ++++..+
T Consensus 474 ~~~~~~g~~~tag-glvf~gt~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~ty~~~G~--------qyv~~~~ 537 (689)
T 1yiq_A 474 VTIFNGGTLSTAG-NLVFEGSADGRVIAYAADT--GEKLWEQPAASGVMAAPVTYSVDGE--------QYVTFMA 537 (689)
T ss_dssp SSSCCCCEEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE--------EEEEEEE
T ss_pred CCCccCccceECC-CEEEEECCCCcEEEEECCC--CccceeeeCCCCcccCceEEEECCE--------EEEEEEe
Confidence 3444433444444 6777777788877777666 788887774332 234567777874 5666553
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=1.2e-06 Score=73.57 Aligned_cols=247 Identities=10% Similarity=-0.008 Sum_probs=133.5
Q ss_pred CCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccE------E
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMC------L 109 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v------~ 109 (331)
.++.|..+|..+++..... ............. +..+++++.++.+ .++..+++.. ...+ .
T Consensus 111 ~~g~l~a~d~~tG~~~W~~--~~~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 182 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQT--KVAGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES 182 (376)
T ss_dssp TTSEEEEEETTTCCEEEEE--ECSSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC
T ss_pred CCCEEEEEECCCCCEEEEE--eCCCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC
Confidence 5899999999877622221 1111111111121 2366777777766 5554443320 0111 1
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc-----eeEEEeeCC-CCCcEEEEEcCCCeEEEEEccCCC
Q 020107 110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF-----ELWATSFDV-HQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
.... .+..++++..++.|..+|..+++..-......... .+..+.-.| ..+..++.++.++.+..+|.++++
T Consensus 183 ~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 183 APTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp CCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred CcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence 1111 24568888889999999998876522222111000 000011111 023567777889999999999987
Q ss_pred ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
....... .....+.. ++..++.++.++.|..+|..+++. +..........+...... + +.++++..++
T Consensus 261 ~~w~~~~-----~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~-~--~~l~v~~~~g 328 (376)
T 3q7m_A 261 IMWKREL-----GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY-N--GNLVVGDSEG 328 (376)
T ss_dssp EEEEECC-----CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE-T--TEEEEECTTS
T ss_pred EEeeccC-----CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE-C--CEEEEEeCCC
Confidence 5544332 22344444 356788888899999999998643 322110111222222222 2 5666766677
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
.+..++... ++.+.........+.......+ ..|+.++ .+|.|+.|+
T Consensus 329 ~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~~~----------~~l~v~~-~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVED--GRFVAQQKVDSSGFQTEPVAAD----------GKLLIQA-KDGTVYSIT 375 (376)
T ss_dssp EEEEEETTT--CCEEEEEECCTTCBCSCCEEET----------TEEEEEB-TTSCEEEEE
T ss_pred eEEEEECCC--CcEEEEEecCCCcceeCCEEEC----------CEEEEEe-CCCEEEEEe
Confidence 766666554 6666666543333333222223 3667777 799999987
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.92 E-value=4.8e-07 Score=71.17 Aligned_cols=194 Identities=13% Similarity=0.027 Sum_probs=125.4
Q ss_pred EEEEEEcCCCCeEEEEec---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 108 CLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
...+.|++++ .|+.++. ++.|+++|+.+++......+..+. ....+++. ++.+.++.-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 4688999886 4554432 689999999998763322222222 22345554 346666667889999999999887
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-CC---ceEEEEECCCCCCeEEEEE
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-GG---GVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~~~~~~~ 260 (331)
+..+... .... ..+++ ++..++++..++.|.++|..+. +....+.... .. .++.+.|. + +.+.+..
T Consensus 99 ~~~i~~g--~~~g---~glt~-Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-d--g~lyvn~ 168 (266)
T 2iwa_A 99 IKNFTHQ--MKDG---WGLAT-DGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-N--GEVWANI 168 (266)
T ss_dssp EEEEECC--SSSC---CEEEE-CSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEEE
T ss_pred EEEEECC--CCCe---EEEEE-CCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-C--CEEEEec
Confidence 7777651 0111 23455 5666666667899999999885 4344322221 11 36778888 5 4454554
Q ss_pred -ecCcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 261 -MHNGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+.+.+++... ++.+..+.-. .....+++|+|++. ++++++. ....|.+-++..
T Consensus 169 ~~~~~V~vID~~t--g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk-~~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 WQTDCIARISAKD--GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGK-LWPKLFEIKLHL 237 (266)
T ss_dssp TTSSEEEEEETTT--CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEET-TCSEEEEEEEEE
T ss_pred CCCCeEEEEECCC--CcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECC-CCCeEEEEEEec
Confidence 456755566554 6777776521 12458999999986 7888888 888888887654
No 238
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.91 E-value=5e-06 Score=69.68 Aligned_cols=254 Identities=11% Similarity=0.056 Sum_probs=138.3
Q ss_pred CCCcEEEEeccCcccceEEeEeee-------cCcE-eEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----Ccc
Q 020107 42 RNGSISLFNVNAEEKNLELLYRMD-------TAGI-FDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSM 107 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~ 107 (331)
.++.|..+|.++++.......... ...+ ..+.. . +..+++++.++.+ .++..+++.. ...
T Consensus 61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 134 (376)
T 3q7m_A 61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--S----GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE 134 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--E----TTEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--e----CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc
Confidence 588999999987762222211110 1122 22222 2 3367777777777 5555444321 001
Q ss_pred EE-EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeeccccee-----EEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 108 CL-CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFEL-----WATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 108 v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
+. .... .+..+++++.++.|..+|.++++. +-......... ..... .+..++.++.++.|..+|..+
T Consensus 135 ~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 135 ALSRPVV--SDGLVLIHTSNGQLQALNEADGAV--KWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp CCSCCEE--ETTEEEEECTTSEEEEEETTTCCE--EEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTT
T ss_pred eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcE--EEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCC
Confidence 10 0111 245788889999999999988864 32332211110 11121 135677788899999999999
Q ss_pred CCceeeeecccCCC-cceEE---EEEec-CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeE
Q 020107 182 SPFKLAFQNSKIHK-MGVCC---IASIP-SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 182 ~~~~~~~~~~~~~~-~~v~~---~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (331)
++............ ..+.. +...| ..+..++.++.++.+..+|.++++ .+.. .. ......+... + +.+
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-~~w~--~~-~~~~~~~~~~-~--~~l 280 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-IMWK--RE-LGSVNDFIVD-G--NRI 280 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-EEEE--EC-CCCEEEEEEE-T--TEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-EEee--cc-CCCCCCceEE-C--CEE
Confidence 88665554311000 00000 00011 024567778889999999998864 3332 22 2234444443 2 566
Q ss_pred EEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCccc
Q 020107 257 LAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
++++.++.+..++... ++.+..... ....+...... + ..|+.++ .+|.|+.+|..++..
T Consensus 281 ~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~-~----------~~l~v~~-~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVLY-N----------GNLVVGD-SEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEEE-T----------TEEEEEC-TTSEEEEEETTTCCE
T ss_pred EEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEEE-C----------CEEEEEe-CCCeEEEEECCCCcE
Confidence 6777777866666554 565555542 12222223322 2 3677777 799999999988754
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=8.4e-07 Score=80.27 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=113.8
Q ss_pred EEEEcCCCCeEEEEecCC-------------------eEEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCC-
Q 020107 110 CLEWNPSATSITVGLSDG-------------------SVSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQP- 162 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~- 162 (331)
.++++|++..++++..++ .|..+|.++++..-......|. ....-+.... ++
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCc
Confidence 567888999999887764 5999999998753222222231 1111222222 44
Q ss_pred --cEEEEEcCCCeEEEEEccCCCceeeeecccC--------CCcce------------------------EEEEEecCCC
Q 020107 163 --HMVYTGSDDCKFSGWDIRESPFKLAFQNSKI--------HKMGV------------------------CCIASIPSDS 208 (331)
Q Consensus 163 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~v------------------------~~~~~~~~~~ 208 (331)
..++.++.+|.++++|.++++.+..+...+. ...++ ..++++| +.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~ 404 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT 404 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence 6789999999999999999987655442110 00111 1568888 66
Q ss_pred CEEEEEecC-------------------------------------------CeEEEEEecCCCCCceeeeeecCCceEE
Q 020107 209 NTLLTGSYD-------------------------------------------EYLRVWDVRSISKPVNETSVCLGGGVWR 245 (331)
Q Consensus 209 ~~l~~~~~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 245 (331)
.++++...+ +.|..||+.++ +.+-+ ..+..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~--~~~~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWS--VEHVSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT-EEEEE--EEESSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC-cEEee--cCCCCCCcC
Confidence 677765432 78999999986 33433 345555555
Q ss_pred EEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-CCcceeeeeecCCCC
Q 020107 246 IKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-HGSLAYGADWQRGRS 298 (331)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~ 298 (331)
..+...+ +++++++.++.+++|+... ++.+.++.. +.....-+.|..++.
T Consensus 482 g~~~~~g-~~v~~g~~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 482 GTLTTAG-NVVFQGTADGRLVAYHAAT--GEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp CEEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEeCC-CEEEEECCCCcEEEEECCC--CceeeeeeCCCCcccCCEEEEeCCE
Confidence 5555555 6777777788877777766 688887773 323334456667774
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=2.7e-07 Score=76.70 Aligned_cols=226 Identities=10% Similarity=-0.030 Sum_probs=123.3
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-e-----cCcEeEEEEcCCCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-D-----TAGIFDIKWSPVGG 79 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~ 79 (331)
+.....+ .+.++|++ .++.++.+......-+..++.|.+||+.+.+ ....+.-+ . ......++++|+
T Consensus 62 i~vG~~P-~i~~spDg---~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-vv~~I~v~~~~~~~~g~~P~~ia~SpD-- 134 (368)
T 1mda_H 62 SLGAFLS-LAVAGHSG---SDFALASTSFARSAKGKRTDYVEVFDPVTFL-PIADIELPDAPRFSVGPRVHIIGNCAS-- 134 (368)
T ss_dssp EEECTTC-EEEECTTS---SCEEEEEEEETTTTSSSEEEEEEEECTTTCC-EEEEEEETTSCSCCBSCCTTSEEECTT--
T ss_pred EeCCCCC-ceEECCCC---CEEEEEcccccccccCCCCCEEEEEECCCCC-EEEEEECCCccccccCCCcceEEEcCC--
Confidence 3344445 78898887 5555554100000000136889999999986 44444221 0 123568999999
Q ss_pred CCCCeEEEEcCC--ccE-E--EecCCCcc-cCccE---------EEEEEcCC----------------------------
Q 020107 80 NAGPFLAQADAD--GGL-L--RDITGEKI-SSSMC---------LCLEWNPS---------------------------- 116 (331)
Q Consensus 80 ~~~~~l~~~~~d--g~i-i--w~~~~~~~-~~~~v---------~~~~~~~~---------------------------- 116 (331)
+++++++... ..+ + +|..+... ....+ .-+.++++
T Consensus 135 --Gk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v 212 (368)
T 1mda_H 135 --SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212 (368)
T ss_dssp --SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred --CCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence 8888888753 345 6 77754000 00000 00111122
Q ss_pred ---------CCeEEEEecCCeEEEEEccccceeeeeeeec-------cc---ceeEEEeeCCCCCcEEEEE-c---C---
Q 020107 117 ---------ATSITVGLSDGSVSIVSVVESQLEVLQQWKA-------HE---FELWATSFDVHQPHMVYTG-S---D--- 170 (331)
Q Consensus 117 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~---~~v~~~~~~~~~~~~l~~~-~---~--- 170 (331)
+..++..+. +.|.+.|........+..+.. +. .....++++| +++.++.+ . .
T Consensus 213 g~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 213 SSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred CCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 222222222 445555554322111111110 00 1111267888 55555543 3 2
Q ss_pred --CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCC-EEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEE
Q 020107 171 --DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSN-TLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRI 246 (331)
Q Consensus 171 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 246 (331)
++.+.++|+.+.+.+..+.. ......|.|+| +++ ++++.. .++.|.++|+.+. +.+.. ..-......+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~-kvv~~--I~vg~~P~~i 362 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASD-QDQSS--VELDKGPESL 362 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEE----EEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSC-EEEEE--CCCCSCCCEE
T ss_pred ccCCCEEEEECCCCeEEEEEEC----CCCcceEEECC-CCCEEEEEccCCCCeEEEEECCCC-cEEEE--EECCCCCCEE
Confidence 23566999999988777776 33688999999 776 566666 5999999999985 55544 3444555666
Q ss_pred EECC
Q 020107 247 KHHP 250 (331)
Q Consensus 247 ~~~~ 250 (331)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 6654
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.79 E-value=6.5e-07 Score=73.53 Aligned_cols=210 Identities=12% Similarity=-0.018 Sum_probs=125.4
Q ss_pred eEEEEcCCccE-EEecCCCcc------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 84 FLAQADADGGL-LRDITGEKI------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 84 ~l~~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
.|..++.++.+ .++.. ++. ....+.++...+++. +.+++.++.|..+|.. ++. ...+......+.++.
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE--KWRFKTNDAITSAAS 183 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCE
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE--eEEEecCCCceeeeE
Confidence 56667777766 55554 221 122334455555555 6778888999999988 543 333333444566677
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
..+ ++. +..++ +.|..+| .+++....+.. ....+.++...+ ++ .|..++.++.|..+|.. + ..+.. .
T Consensus 184 ~d~-~g~-l~v~t--~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~-g-~~~~~-~ 250 (330)
T 3hxj_A 184 IGK-DGT-IYFGS--DKVYAIN-PDGTEKWNFYA---GYWTVTRPAISE-DG-TIYVTSLDGHLYAINPD-G-TEKWR-F 250 (330)
T ss_dssp ECT-TCC-EEEES--SSEEEEC-TTSCEEEEECC---SSCCCSCCEECT-TS-CEEEEETTTEEEEECTT-S-CEEEE-E
T ss_pred EcC-CCE-EEEEe--CEEEEEC-CCCcEEEEEcc---CCcceeceEECC-CC-eEEEEcCCCeEEEECCC-C-CEeEE-e
Confidence 664 545 44445 8899999 66654444443 445677788876 55 45666777888888743 2 33332 1
Q ss_pred eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107 237 VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
......+..+...++ +.+.+++.++++..++ . +++.+..+......+.++...+++ .|..++ .+
T Consensus 251 ~~~~~~~~~~~~~~~--g~l~v~t~~ggl~~~d--~-~g~~~~~~~~~~~~~~~~~~d~~g----------~l~~gt-~~ 314 (330)
T 3hxj_A 251 KTGKRIESSPVIGNT--DTIYFGSYDGHLYAIN--P-DGTEKWNFETGSWIIATPVIDENG----------TIYFGT-RN 314 (330)
T ss_dssp ECSSCCCSCCEECTT--SCEEEECTTCEEEEEC--T-TSCEEEEEECSSCCCSCCEECTTC----------CEEEEC-TT
T ss_pred eCCCCccccceEcCC--CeEEEecCCCCEEEEC--C-CCcEEEEEEcCCccccceEEcCCC----------EEEEEc-CC
Confidence 222333444555555 5566666666755554 3 356666665555566777776776 455566 79
Q ss_pred CeEEEEcCCCc
Q 020107 317 RLLRIWMPESD 327 (331)
Q Consensus 317 ~~i~iW~~~~~ 327 (331)
|.+++...+..
T Consensus 315 G~~~~~~~~~~ 325 (330)
T 3hxj_A 315 GKFYALFNLEH 325 (330)
T ss_dssp SCEEEEEC---
T ss_pred CeEEEEecccc
Confidence 99999876544
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=7.3e-05 Score=69.21 Aligned_cols=254 Identities=9% Similarity=0.039 Sum_probs=152.3
Q ss_pred CCcEEEEeccCcccceEEeEee-------ecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCc-------------
Q 020107 43 NGSISLFNVNAEEKNLELLYRM-------DTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEK------------- 102 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~------------- 102 (331)
++-+.+|+..+.. +...... ....|.++...++ +.+.+ |+.+|..+++..+..
T Consensus 234 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~----g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~ 306 (795)
T 4a2l_A 234 GAGLFLINPKTKE--IKNYLHSPSNPKSISSNYIRSLAMDSQ----NRLWI-GTFNDLNIYHEGTDSFASYSSNPVENGS 306 (795)
T ss_dssp SSCEEEEETTTTE--EEEECCCTTCTTSCSCSBEEEEEECTT----SCEEE-EESSCEEEEETTTTEEEEECCCTTSTTS
T ss_pred CCCeEEEeCCCCe--EEEeecCCCCccccCCCeEEEEEEcCC----CCEEE-EeCChhheEcCCCCeEEEEecCCCCCCC
Confidence 4458888876653 3333211 1345999988877 55444 444565566654332
Q ss_pred ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 103 ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 103 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
.....|.++...++|. |-+|+.++-|..++..++......... -....|.++...+ +++ |..|+.++-|..||
T Consensus 307 l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYN 383 (795)
T ss_dssp CSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEEC
T ss_pred CCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEc
Confidence 2346789999888876 556777777889988765542222111 0234688888875 444 55677777899999
Q ss_pred ccCCCceeeeecc-----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee----ecCCceEEEEEC
Q 020107 179 IRESPFKLAFQNS-----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV----CLGGGVWRIKHH 249 (331)
Q Consensus 179 ~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~ 249 (331)
..+++........ ......|.++...+ ++.+|..|+.++-|..||.++.. ...... .....|.++...
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d 460 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPD 460 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEEC
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEEC
Confidence 8876532221110 01245789999887 77757777777789999987642 222111 124578999988
Q ss_pred CCCCCeEEEEEecCcEEEEEEcCcccceeEEeec-------CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 250 PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-------HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
+++ . +.+++. +++..++... ++ ...+.. ....|.++...+++ .|..++ . +-|..|
T Consensus 461 ~~g-~-lwigt~-~Gl~~~~~~~--~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g----------~lWigt-~-~Gl~~~ 522 (795)
T 4a2l_A 461 GEG-N-LWLGTL-SALVRFNPEQ--RS-FTTIEKEKDGTPVVSKQITTLFRDSHK----------RLWIGG-E-EGLSVF 522 (795)
T ss_dssp SSS-C-EEEEES-SCEEEEETTT--TE-EEECCBCTTCCBCCCCCEEEEEECTTC----------CEEEEE-S-SCEEEE
T ss_pred CCC-C-EEEEec-CceeEEeCCC--Ce-EEEccccccccccCCceEEEEEECCCC----------CEEEEe-C-CceEEE
Confidence 874 4 444444 6766666443 22 222221 23568888888776 344455 4 557777
Q ss_pred cCCCc
Q 020107 323 MPESD 327 (331)
Q Consensus 323 ~~~~~ 327 (331)
+..++
T Consensus 523 ~~~~~ 527 (795)
T 4a2l_A 523 KQEGL 527 (795)
T ss_dssp EEETT
T ss_pred eCCCC
Confidence 76543
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=3.3e-06 Score=66.42 Aligned_cols=190 Identities=5% Similarity=-0.027 Sum_probs=121.0
Q ss_pred EeEEEEcCCCCCCCCeEEEEcC--CccE-EEecCCCcccC-----c--cEEEEEEcCCCCeEEEEec-CCeEEEEEcccc
Q 020107 69 IFDIKWSPVGGNAGPFLAQADA--DGGL-LRDITGEKISS-----S--MCLCLEWNPSATSITVGLS-DGSVSIVSVVES 137 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~--dg~i-iw~~~~~~~~~-----~--~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 137 (331)
...+.|+|+ +.++++.+. ++.+ +.|+.+++... . ....+++ +++.|+.+.. ++.+.++|..+.
T Consensus 23 ~~Gl~~~~d----g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 23 TQGLVYAEN----DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp EEEEEECST----TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTT
T ss_pred cccEEEeCC----CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCC
Confidence 679999997 655555543 4566 88887765421 1 1123444 3556666554 899999999877
Q ss_pred ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC---cceEEEEEecCCCCEEEEE
Q 020107 138 QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK---MGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~ 214 (331)
+. +..+......-..++ + +++.++.+..++.|.++|..+.+....+.... .. ..++.+.|. ++.+.+..
T Consensus 97 ~v--~~~i~~g~~~g~glt--~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~--dg~lyvn~ 168 (266)
T 2iwa_A 97 SN--IKNFTHQMKDGWGLA--T-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI--NGEVWANI 168 (266)
T ss_dssp EE--EEEEECCSSSCCEEE--E-CSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE--TTEEEEEE
T ss_pred cE--EEEEECCCCCeEEEE--E-CCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE--CCEEEEec
Confidence 54 555542212223344 4 44555555678999999999988766666411 11 236788887 46555555
Q ss_pred ecCCeEEEEEecCCCCCceeeeee-c-----------CCceEEEEECCCCCCeEEEEEecCcEEEEEEcCc
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVC-L-----------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
..++.|.+.|..++ +.+..+... . ......|+|+|+++.++++....+.+..+++...
T Consensus 169 ~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 56889999999986 444442221 0 1356899999998566666667788777777653
No 244
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=4.7e-05 Score=62.12 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=120.2
Q ss_pred ccEEEEEEcCCCCeEEEEec-CCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc
Q 020107 106 SMCLCLEWNPSATSITVGLS-DGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR 180 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 180 (331)
.....++|++.++.|+.+.. .+.|..+++.. ... ...+...-.....+++.+.+++++++-...+.|.+.|+.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~--~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc--EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 34678999987776666554 68999999875 221 112222223457888876456666776778999999987
Q ss_pred CCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 181 ESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.......+.. .......++++|..+.++++.... +.|...++... ....+....-.....++++|++..++++-
T Consensus 108 g~~~~~~~~~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 108 GVKRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSSEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEC---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 5433222322 235678999998344444444333 67888887642 22221122335678999998874455554
Q ss_pred EecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 260 CMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
...+.|..+++.....+.+...........++++.. + .++++-. ..+.|..++..++.
T Consensus 183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~---------~ly~~d~-~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D---------KVFWTDI-INEAIFSANRLTGS 240 (316)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T---------EEEEEET-TTTEEEEEETTTCC
T ss_pred CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C---------EEEEEEC-CCCeEEEEeCCCCc
Confidence 455666666665322222222211223456777753 3 4666665 78889888876553
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.71 E-value=7.4e-05 Score=61.87 Aligned_cols=222 Identities=6% Similarity=-0.054 Sum_probs=128.7
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEE-cCCccE-EEecCCCccc------CccEEEEEEc
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQA-DADGGL-LRDITGEKIS------SSMCLCLEWN 114 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~dg~i-iw~~~~~~~~------~~~v~~~~~~ 114 (331)
...|+..+++... ...+.. ....+..++|.+. ...|..+ ...+.| .+++.+.... ......+++.
T Consensus 52 ~~~I~~i~~~g~~--~~~~~~-~~~~~~~l~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 124 (349)
T 3v64_C 52 RIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 124 (349)
T ss_dssp BSCEEEECTTSCC--EEEEEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred ccceEEEeCCCCe--eEEeec-CCCceEEEEEecc----ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEe
Confidence 5668888887653 333322 2345789999987 4455544 455566 5665544321 1234578888
Q ss_pred CCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeeeccc
Q 020107 115 PSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 115 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~ 192 (331)
+.+..|+.+ ...+.|.+.+++.... ...+.........++++|.++.++++-... +.|..+++...........
T Consensus 125 ~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-- 200 (349)
T 3v64_C 125 WVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-- 200 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS--
T ss_pred cCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence 766665554 4478899999875432 112222334568999998666666666555 8899998875432222221
Q ss_pred CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.-.....|+++|..+.+.++-...+.|..+|+.... ...+..........+++..+ .++++-...+. +..+..
T Consensus 201 -~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~--~~~~~~~~~~~P~giav~~~--~ly~td~~~~~--V~~~~~ 273 (349)
T 3v64_C 201 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH--RKAVISQGLPHPFAITVFED--SLYWTDWHTKS--INSANK 273 (349)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEETT--EEEEEETTTTE--EEEEET
T ss_pred -CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc--eEEEEeCCCCCceEEEEECC--EEEEecCCCCe--EEEEEc
Confidence 244578999998444455555567889999987532 22212223445677777332 44444444455 444443
Q ss_pred cccceeEEee
Q 020107 273 EKAEVLETYA 282 (331)
Q Consensus 273 ~~~~~~~~~~ 282 (331)
..++....+.
T Consensus 274 ~~G~~~~~i~ 283 (349)
T 3v64_C 274 FTGKNQEIIR 283 (349)
T ss_dssp TTCCSCEEEE
T ss_pred cCCCccEEec
Confidence 3344444443
No 246
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.70 E-value=5.5e-05 Score=63.60 Aligned_cols=233 Identities=6% Similarity=-0.055 Sum_probs=132.4
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWN 114 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~ 114 (331)
...|+.+++.... ...+.. ....+..++|.+. ...|. +-...+.| .+++.+... .......+++.
T Consensus 95 ~~~I~~i~~~~~~--~~~~~~-~~~~~~gl~~d~~----~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 95 RIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHR----RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp BSCEEEECTTSCC--CEEEEC-SCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred CccceeeccCCCc--EEEEec-CCCccEEEEEecC----CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence 5678888887654 333322 3345789999987 44454 44455556 566554432 11234567888
Q ss_pred CCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeeeccc
Q 020107 115 PSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 115 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~ 192 (331)
+.+..|+.+ ...+.|.+.+++.... ...+.........++++|.++.++++-... +.|..+++...........
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-- 243 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-- 243 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS--
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCce--EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC--
Confidence 766665554 4467888888875432 122222334578899998566666665555 7888888875432222222
Q ss_pred CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.-.....|+++|..+.+.++-...+.|..+|+... . ...+..........|++..+ .++++....+. |..+..
T Consensus 244 -~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~-~~~~~~~~~~~P~giav~~~--~ly~td~~~~~--V~~~~~ 316 (386)
T 3v65_B 244 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-H-RKAVISQGLPHPFAITVFED--SLYWTDWHTKS--INSANK 316 (386)
T ss_dssp -SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-S-CEEEECSSCSSEEEEEEETT--EEEEEETTTTE--EEEEET
T ss_pred -CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-e-eEEEEECCCCCceEEEEECC--EEEEeeCCCCe--EEEEEC
Confidence 24457899999834555555556788999998753 2 22212223445677777332 45544444444 444443
Q ss_pred cccceeEEeecCCcceeeeee
Q 020107 273 EKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 273 ~~~~~~~~~~~h~~~v~~~~~ 293 (331)
..++....+........++++
T Consensus 317 ~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 317 FTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTCCSCEEEECSCSCCCCEEE
T ss_pred CCCcceEEEccCCCCCceEEE
Confidence 334444444433233344433
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=4.3e-05 Score=62.53 Aligned_cols=230 Identities=8% Similarity=0.003 Sum_probs=132.0
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee-------------------ecCcEeE
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM-------------------DTAGIFD 71 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~-------------------~~~~v~~ 71 (331)
.+..+++.+.+ +++.++. .++.|..|+..+.. +..+... ....+..
T Consensus 20 ~p~~i~~d~~g---~~l~v~~----------~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g 84 (322)
T 2fp8_A 20 APNSFTFDSTN---KGFYTSV----------QDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYD 84 (322)
T ss_dssp CCCCEECCTTC---SSEEEEC----------TTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred CceEEEEcCCC---CEEEEEc----------CCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCce
Confidence 46677877654 7677776 58899999877643 3322110 1134788
Q ss_pred EEEcC-CCCCCCCeEEEEcCCccEEEecCCCcc----------cCccEEEEEEcC-CCCeEEEEec--------------
Q 020107 72 IKWSP-VGGNAGPFLAQADADGGLLRDITGEKI----------SSSMCLCLEWNP-SATSITVGLS-------------- 125 (331)
Q Consensus 72 ~~~~~-~~~~~~~~l~~~~~dg~iiw~~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~~-------------- 125 (331)
+++.+ + +.++++....+...++..+... .......+++.+ +|+..++-..
T Consensus 85 i~~~~~~----g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 85 ISYNLQN----NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp EEEETTT----TEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred EEEcCCC----CcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 99998 5 4444443444422566553321 112467899999 8876555432
Q ss_pred ---CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc-EEEEEcCCCeEEEEEccCCCc--eeeeecccCCCcceE
Q 020107 126 ---DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH-MVYTGSDDCKFSGWDIRESPF--KLAFQNSKIHKMGVC 199 (331)
Q Consensus 126 ---dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~ 199 (331)
++.|..+|..+++.... .........++++| +++ ++++-...+.|.++++..... ...+.. ... ..
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~---~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~ 232 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLL---LKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PG 232 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEE---EEEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EE
T ss_pred cCCCceEEEEeCCCCEEEEe---ccCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CC
Confidence 36788888876543222 11123356789998 666 445556678999999875321 222222 123 78
Q ss_pred EEEEecCCCCEEEEEec----------CCeEEEEEecCCCCCceeeeeec---CCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 200 CIASIPSDSNTLLTGSY----------DEYLRVWDVRSISKPVNETSVCL---GGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 200 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.+++.+ ++++.++... .+.|..+|.. .+.+..+.... -..+..+++. ++ .++++....+.+.
T Consensus 233 gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 233 NIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVG 307 (322)
T ss_dssp EEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEE
T ss_pred CeEECC-CCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceE
Confidence 899999 8877666544 4567777764 23333311121 1345666663 32 4454444566666
Q ss_pred EEEEcC
Q 020107 267 VVKVGG 272 (331)
Q Consensus 267 ~~~~~~ 272 (331)
.+++..
T Consensus 308 ~~~~~~ 313 (322)
T 2fp8_A 308 ILVYDK 313 (322)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 666543
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=5.2e-06 Score=64.62 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeeeeecccce-eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 108 CLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQWKAHEFE-LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
...+.|+ ++.+..+.+.+| .|+++|+++++. +..+...... ...++.. +..+.++.-.++.+.++|..+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv--~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT--LQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE--EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcE--EEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 4678887 555555555555 899999999876 3333322211 1234443 446666666799999999999988
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cC---CceEEEEECCCCCCeEEEEE
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LG---GGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~ 260 (331)
+..+.. .... ..++ + ++..|+....++.|.++|..+. +.+..+... .. ..++.+.|. + +.+.+..
T Consensus 120 ~~ti~~-~~eG---~glt--~-dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~--G~lyan~ 188 (262)
T 3nol_A 120 VRSFNY-DGEG---WGLT--H-NDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-D--GEIFANV 188 (262)
T ss_dssp EEEEEC-SSCC---CCEE--E-CSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-T--TEEEEEE
T ss_pred EEEEEC-CCCc---eEEe--c-CCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-C--CEEEEEE
Confidence 888876 2111 2333 4 5666666666788999999885 434432222 12 234567776 4 4455555
Q ss_pred -ecCcEEEEEEcCcccceeEEeecC------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107 261 -MHNGFAVVKVGGEKAEVLETYAKH------------GSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
..+. +..++..+++.+..+.-. ....++++|+|+.. ++++||-
T Consensus 189 w~~~~--I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--------~lfVTGK 244 (262)
T 3nol_A 189 WQTNK--IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--------RLFVTGK 244 (262)
T ss_dssp TTSSE--EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--------EEEEEET
T ss_pred ccCCe--EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--------EEEEECC
Confidence 4565 555555557777776531 13558899999885 6666664
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.65 E-value=7.9e-05 Score=62.63 Aligned_cols=202 Identities=8% Similarity=-0.080 Sum_probs=120.7
Q ss_pred ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
..+..++|++.+..|+.+. ..+.|..+++....... .+.........+++.+..+.++++-...+.|.+.++.....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 4567899998777666554 57889999988654322 22222234567788765667777777788999998875443
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
...+.. .-.....|+++|..+.++++-... +.|..+++... ....+....-.....|+++|++..++++-...+
T Consensus 194 ~~l~~~---~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 194 KVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp EEEECS---SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred EEeecC---CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 322222 335678999998444445554444 67888887653 222212233345789999987644555544455
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.|..+++... .....+........++++.. + .++++-. ..+.|..++..++
T Consensus 269 ~I~~~d~dG~--~~~~~~~~~~~~P~giav~~-~---------~ly~td~-~~~~V~~~~~~~G 319 (386)
T 3v65_B 269 VIERANLDGS--HRKAVISQGLPHPFAITVFE-D---------SLYWTDW-HTKSINSANKFTG 319 (386)
T ss_dssp EEEEECTTSC--SCEEEECSSCSSEEEEEEET-T---------EEEEEET-TTTEEEEEETTTC
T ss_pred EEEEEeCCCC--eeEEEEECCCCCceEEEEEC-C---------EEEEeeC-CCCeEEEEECCCC
Confidence 5444444322 22222222334556777733 3 4666655 7888888885444
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=4.9e-06 Score=64.78 Aligned_cols=180 Identities=10% Similarity=0.046 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceee
Q 020107 108 CLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLA 187 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 187 (331)
...+.|+ ++.+..+.+.+|.|+++|+++++..... +.. ..-...+++. +..+.++.-.++.+.+||..+.+.+..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4577776 3455566667889999999998763333 332 1112335554 446666677899999999999988888
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-ecCC---ceEEEEECCCCCCeEEEEE-ec
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-CLGG---GVWRIKHHPFIPGLVLAAC-MH 262 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~~~~~~~~-~~ 262 (331)
+.. .+. -..++ + ++..|+.+..++.|.++|..+. +.+..+.. .... .++.+.|. + +.+.+.. ..
T Consensus 132 i~~-~~e---GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-d--G~lyanvw~s 200 (268)
T 3nok_A 132 TRY-SGE---GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-N--GVIYANIWHS 200 (268)
T ss_dssp EEC-SSC---CCCEE--E-ETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEEETTC
T ss_pred EeC-CCc---eeEEe--c-CCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-C--CEEEEEECCC
Confidence 776 212 23444 4 5666666667899999999886 33433222 2222 34667777 4 4455554 45
Q ss_pred CcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107 263 NGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
+. +..+...+++.+..+.-. ....+++++.|+.. ++++||-
T Consensus 201 ~~--I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--------rlfVTGK 254 (268)
T 3nok_A 201 SD--VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--------RIFMTGK 254 (268)
T ss_dssp SE--EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--------CEEEEET
T ss_pred Ce--EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--------EEEEeCC
Confidence 55 444555556777776521 13568899999875 6777764
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.62 E-value=0.0001 Score=59.80 Aligned_cols=217 Identities=12% Similarity=0.003 Sum_probs=122.7
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----cCccEEEEEEcCCCCeEEEEecC-C-eEEEEEccccce
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----SSSMCLCLEWNPSATSITVGLSD-G-SVSIVSVVESQL 139 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-g-~i~i~d~~~~~~ 139 (331)
.....++|.++ +.++++-..++.+ .++...... .......+++.++++++++.... + .|..++..+++.
T Consensus 32 ~~pegia~~~~----g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPD----GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTT----SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCC----CCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45778999998 7777777677777 666554321 13457889999999865554332 2 477777777765
Q ss_pred eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc-eeeee------cccCCCcceEEEEEecCCCCEE-
Q 020107 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF-KLAFQ------NSKIHKMGVCCIASIPSDSNTL- 211 (331)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~l- 211 (331)
..+..+. .......++..+ ++..+++-..++.|..+|..+++. ..... .....-.....| +| ++..|
T Consensus 108 ~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~ly 182 (306)
T 2p4o_A 108 ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLY 182 (306)
T ss_dssp EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEE
T ss_pred EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEE
Confidence 4333322 112233444443 445555555688999999865421 11000 000011234555 77 66554
Q ss_pred EEEecCCeEEEEEecCCCCC-ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeE--EeecCCcce
Q 020107 212 LTGSYDEYLRVWDVRSISKP-VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLE--TYAKHGSLA 288 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v 288 (331)
++-...+.|..||+...... .... .........+++.+++ .++++....+.+.+++ .. ++... .+.......
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~-~~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~--~~-G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIA--PD-RSTTIIAQAEQGVIGS 257 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTC-CEEEECBTTCCEEEEC--TT-CCEEEEECGGGTCTTE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEE-EeccCCCCCeEECCCC-CEEEEeCCCCeEEEEC--CC-CCEEEEeecccccCCc
Confidence 55556789999998752111 1111 1112346678999986 5555555566755544 32 44422 233233567
Q ss_pred eeeeec---CCC
Q 020107 289 YGADWQ---RGR 297 (331)
Q Consensus 289 ~~~~~~---~~~ 297 (331)
++++|. |++
T Consensus 258 ~~~a~~g~~~d~ 269 (306)
T 2p4o_A 258 TAVAFGQTEGDC 269 (306)
T ss_dssp EEEEECCSTTTT
T ss_pred eEEEEecccCCC
Confidence 899998 776
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=2.3e-06 Score=74.45 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=128.0
Q ss_pred CCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEee-C-CCCCcEEEEEc------------------CCCe
Q 020107 115 PSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSF-D-VHQPHMVYTGS------------------DDCK 173 (331)
Q Consensus 115 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~~------------------~dg~ 173 (331)
+||+++++... ++.|.+.|+.+.+...+..+. .......+++ . | ++.++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCce
Confidence 37788777665 678999999987653333443 2334778887 4 7 566666663 3468
Q ss_pred EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----------------------------------
Q 020107 174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE----------------------------------- 218 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----------------------------------- 218 (331)
+.+.|..+.+....+.. ......++++| +++++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 99999998876666655 12446677899 888888887553
Q ss_pred ---eEEEEEecC--CCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc----------cceeEEeec
Q 020107 219 ---YLRVWDVRS--ISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK----------AEVLETYAK 283 (331)
Q Consensus 219 ---~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 283 (331)
.|.+.|.++ ....+.. ..-......+.++||++..+++....+.+.++++.... ........
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~- 328 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE- 328 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-
T ss_pred EECcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-
Confidence 366777765 2211223 34455678899999985555555578888999988531 11233332
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
-......++|+|++ ...++.- .|++|.+||+++
T Consensus 329 vG~gP~h~aF~~dG---------~aY~t~~-ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 LGLGPLHTAFDGRG---------NAYTSLF-LDSQVVKWNIED 361 (595)
T ss_dssp CCSCEEEEEECTTS---------EEEEEET-TTTEEEEEEHHH
T ss_pred CCCCcceEEECCCC---------eEEEEEe-cCCcEEEEEhhH
Confidence 23456789999998 4555555 899999999876
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.60 E-value=0.00039 Score=64.34 Aligned_cols=249 Identities=12% Similarity=0.155 Sum_probs=148.3
Q ss_pred cEEEEeccCcccceEEeEee-------ecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------------cc
Q 020107 45 SISLFNVNAEEKNLELLYRM-------DTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------------IS 104 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------------~~ 104 (331)
-|.+|+..... +..+... ....|.++...++ +.+ -.|+.++-+ .++..... ..
T Consensus 283 Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~----g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~ 355 (795)
T 4a2l_A 283 DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQ----GGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLS 355 (795)
T ss_dssp CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTT----SCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCS
T ss_pred hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCC----cCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCC
Confidence 58888876653 3333211 2346999988887 554 445554444 55543321 23
Q ss_pred CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee------cccceeEEEeeCCCCCcEEEEEcCCCeEEEEE
Q 020107 105 SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK------AHEFELWATSFDVHQPHMVYTGSDDCKFSGWD 178 (331)
Q Consensus 105 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d 178 (331)
...|.++...+++. |-+|+.++-|..|+..+++......-. .....|.++...+ ++..|..|+.++-|..+|
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 45689998888776 556777778999998876543221110 1235688888875 556466677777899999
Q ss_pred ccCCCceeeeec--ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee------ecCCceEEEEECC
Q 020107 179 IRESPFKLAFQN--SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV------CLGGGVWRIKHHP 250 (331)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~ 250 (331)
..+++.. .+.. .......|.++...+ ++.+.+ |+.+ -+.+||..+. + ...... .....|.++...+
T Consensus 434 ~~~~~~~-~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~i~~d~ 507 (795)
T 4a2l_A 434 RNSGQVE-NFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQR-S-FTTIEKEKDGTPVVSKQITTLFRDS 507 (795)
T ss_dssp TTTCCEE-EECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTT-E-EEECCBCTTCCBCCCCCEEEEEECT
T ss_pred CCCCcEE-EeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCC-e-EEEccccccccccCCceEEEEEECC
Confidence 9877532 2221 011346789999887 666544 4444 4888887753 1 221111 1235688999888
Q ss_pred CCCCeEEEEEecCcEEEEEEcCcccceeEEee-------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEc
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWM 323 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~ 323 (331)
++ .+++ ++. +++..++.... +. .+. .....|.++...+++ .+.+ ++ .. -|..||
T Consensus 508 ~g-~lWi-gt~-~Gl~~~~~~~~--~~--~~~~~~~~~~l~~~~i~~i~~d~~g---------~lWi-gT-~~-Gl~~~d 568 (795)
T 4a2l_A 508 HK-RLWI-GGE-EGLSVFKQEGL--DI--QKASILPVSNVTKLFTNCIYEASNG---------IIWV-GT-RE-GFYCFN 568 (795)
T ss_dssp TC-CEEE-EES-SCEEEEEEETT--EE--EECCCSCSCGGGGSCEEEEEECTTS---------CEEE-EE-SS-CEEEEE
T ss_pred CC-CEEE-EeC-CceEEEeCCCC--eE--EEecCCCCCCCCCCeeEEEEECCCC---------CEEE-Ee-CC-CceeEC
Confidence 74 4444 444 78777766542 22 222 123468888888877 3444 44 34 677787
Q ss_pred CCCc
Q 020107 324 PESD 327 (331)
Q Consensus 324 ~~~~ 327 (331)
..++
T Consensus 569 ~~~~ 572 (795)
T 4a2l_A 569 EKDK 572 (795)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7654
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.59 E-value=0.00029 Score=64.70 Aligned_cols=191 Identities=12% Similarity=0.094 Sum_probs=106.7
Q ss_pred ceeEeee-cCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCc-ccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 12 ADAVEFC-PQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAE-EKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 12 ~~~v~~~-~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
....+|+ |++ ++||.+.... ++....|+++|+.++ + .+..... .....++|+|+ ++.|+...
T Consensus 176 ~~~~~~S~PDG---~~lAy~~~~~-----G~~~~~l~v~dl~~g~~-~l~~~~~---~~~~~~~WspD----g~~l~y~~ 239 (751)
T 2xe4_A 176 VMEVKPAPPEH---DLVAFSVDMS-----GNEVYTIEFKRISDPSQ-TIADKVS---GTNGEIVWGPD----HTSLFYVT 239 (751)
T ss_dssp EEEEEECTTTT---CEEEEEEESS-----SSSCEEEEEEETTCTTC-CCCCCEE---EECSCCEECSS----TTEEEEEE
T ss_pred EeeeEecCCCC---CEEEEEEeCC-----CCceEEEEEEECCCCCE-eCCcccc---CceeeEEEecC----CCEEEEEE
Confidence 3456677 555 8888876210 012235999999887 5 2211111 12457899999 77777666
Q ss_pred CCc-----cE-EEecCCCccc---------CccEEEEEEcCCCCeEEEEec---CCeEEEEEccccceee-eeee-eccc
Q 020107 90 ADG-----GL-LRDITGEKIS---------SSMCLCLEWNPSATSITVGLS---DGSVSIVSVVESQLEV-LQQW-KAHE 149 (331)
Q Consensus 90 ~dg-----~i-iw~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~-~~~~ 149 (331)
.+. .+ .+++.+.+.. ......+.|+|++++|+.... ...|.++|+.++.... +..+ ....
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 542 23 6666654311 123567889999999877653 4568888987652111 0222 2234
Q ss_pred ceeEEEeeCCCCCcEEEEEcCC----CeEEEEEccCCCceee-eecccCCCc--ceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 150 FELWATSFDVHQPHMVYTGSDD----CKFSGWDIRESPFKLA-FQNSKIHKM--GVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
....++.|+. ++.+++....+ ..|..+|+.++..... +.. +.. .+..+.+. .+.++++...++..++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~---~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD---HSEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC---CCSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC---CCCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 4556666653 54555555443 3666777764322222 222 333 34555553 4556677777886555
Q ss_pred EE
Q 020107 223 WD 224 (331)
Q Consensus 223 wd 224 (331)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.59 E-value=4.1e-05 Score=59.06 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=111.5
Q ss_pred ccEEEEEEcCCCCeEEEEecC--CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 106 SMCLCLEWNPSATSITVGLSD--GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
.-...+.|+. +.+..+.+.+ ..|+.+|+.+++......+..+. --..++.. ++.+....-.++.+.+||..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 3456788876 4444444444 48999999998763333332221 11234443 45666666789999999999998
Q ss_pred ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee-cC---CceEEEEECCCCCCeEEEE
Q 020107 184 FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC-LG---GGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~ 259 (331)
.+..+.. . .. -..++ + ++..|+.+..++.|.++|..+. +.+..+... +. ..++.+.|. + +.+.+.
T Consensus 97 ~~~ti~~-~--~~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~--G~lyan 165 (243)
T 3mbr_X 97 PRARFRY-P--GE-GWALT--S-DDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-N--GELLAN 165 (243)
T ss_dssp EEEEEEC-S--SC-CCEEE--E-CSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-T--TEEEEE
T ss_pred EEEEEeC-C--CC-ceEEe--e-CCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-C--CEEEEE
Confidence 8888776 2 22 23444 4 4555555556889999999986 333332221 22 235667776 3 445555
Q ss_pred E-ecCcEEEEEEcCcccceeEEeecC-------------CcceeeeeecCCCCcccccccCcEEEEee
Q 020107 260 C-MHNGFAVVKVGGEKAEVLETYAKH-------------GSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
. ..+. +..+...+++.+..+.-. ....++++++|+.. ++++||-
T Consensus 166 vw~s~~--I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--------~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSR--IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--------RLFVTGK 223 (243)
T ss_dssp ETTTTE--EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--------EEEEEET
T ss_pred ECCCCe--EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--------EEEEECC
Confidence 4 4566 444444446777776511 13568899999875 6777764
No 256
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.58 E-value=1.1e-05 Score=74.00 Aligned_cols=196 Identities=11% Similarity=0.101 Sum_probs=111.0
Q ss_pred cEEEEEEc-CCCCeEEEEec-CC----eEEEEEcccc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeE
Q 020107 107 MCLCLEWN-PSATSITVGLS-DG----SVSIVSVVES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKF 174 (331)
Q Consensus 107 ~v~~~~~~-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i 174 (331)
.+...+|+ |||++|+.+.. +| .|+++|+.++ +.. ...+. .....++|+| +++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc---CceeeEEEec-CCCEEEEEEECCCCCCCEE
Confidence 56788999 99998876544 33 5999999987 521 11121 1245789999 55555554443 368
Q ss_pred EEEEccCCCce--eeeecccCCCcceEEEEEecCCCCEEEEEec---CCeEEEEEecCCCCCc--eeeeeecCCceEEEE
Q 020107 175 SGWDIRESPFK--LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---DEYLRVWDVRSISKPV--NETSVCLGGGVWRIK 247 (331)
Q Consensus 175 ~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~ 247 (331)
.++++.++... ..+.. . .......+.|+| ++++|+..+. ...|.++|+.+..... ..+........+++.
T Consensus 250 ~~~~lgt~~~~~~lv~~~-~-~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE-H-NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEETTSCGGGCEEEEEC-C-CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred EEEECCCCchhcEEEEec-C-CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 88888776432 22322 1 234567889999 8888777653 3468888887752222 322233445566676
Q ss_pred ECCCCCCeEEEEEec---CcEEEEEEcCcccceeEE-eecCCc--ceeeeeecCCCCcccccccCcEEEEeecCCCeEEE
Q 020107 248 HHPFIPGLVLAACMH---NGFAVVKVGGEKAEVLET-YAKHGS--LAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRI 321 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~i 321 (331)
|+.. +.++..+.. +..+++.+....+..... +..|.. .+.++.+. +. .++++.. .++..++
T Consensus 327 ~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~--------~lv~~~~-~~g~~~l 393 (751)
T 2xe4_A 327 MHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SN--------YLVVAGR-RAGLTRI 393 (751)
T ss_dssp EETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SS--------EEEEEEE-ETTEEEE
T ss_pred eeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CC--------EEEEEEE-eCCEEEE
Confidence 6544 444444433 334555554332111122 222322 44555554 32 5677777 7886555
Q ss_pred Ec
Q 020107 322 WM 323 (331)
Q Consensus 322 W~ 323 (331)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 257
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.58 E-value=0.00017 Score=59.12 Aligned_cols=266 Identities=8% Similarity=-0.054 Sum_probs=140.2
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe---eecCcEeEEEEcCCCCCCCCeEE
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR---MDTAGIFDIKWSPVGGNAGPFLA 86 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~l~ 86 (331)
..+.+|.+.+.. ..+|+|. .|.| +...+.++ ....... .....+.+|.|.+. .+.
T Consensus 36 ~~~~~v~~~~~~---~~~~~G~-----------~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~~------~~~ 93 (327)
T 2xbg_A 36 ATILDMSFIDRH---HGWLVGV-----------NATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQGN------EGW 93 (327)
T ss_dssp SCEEEEEESSSS---CEEEEET-----------TTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEETT------EEE
T ss_pred CcEEEEEECCCC---cEEEEcC-----------CCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEecCC------eEE
Confidence 456677665443 6777764 6655 33333332 2232211 12346889999764 333
Q ss_pred EEcCCccEE--------EecCCCc-ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeeecccceeEEEe
Q 020107 87 QADADGGLL--------RDITGEK-ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 87 ~~~~dg~ii--------w~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~ 156 (331)
.++..|.++ |...... .....+..+.+.+++..++++ .+|.|.. ..+.+ .+..+ .......+..++
T Consensus 94 ~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~--~~~~~~~~~~~~ 169 (327)
T 2xbg_A 94 IVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL--VQEAIGVMRNLN 169 (327)
T ss_dssp EEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE--ECSCCCCEEEEE
T ss_pred EEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe--ecCCCcceEEEE
Confidence 345566552 3222211 122456778777666655554 4565432 11222 23222 223445688999
Q ss_pred eCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee
Q 020107 157 FDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS 236 (331)
Q Consensus 157 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 236 (331)
+.| ++.+++.+...+..+-.|-. +..-..+.. .....+..+.+.+ ++.++ ..+.+|.+++.+...+ +......
T Consensus 170 ~~~-~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~--~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~ 242 (327)
T 2xbg_A 170 RSP-SGEYVAVSSRGSFYSTWEPG-QTAWEPHNR--TTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNS-ENWGELL 242 (327)
T ss_dssp ECT-TSCEEEEETTSSEEEEECTT-CSSCEEEEC--CSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEE-EEECCCB
T ss_pred EcC-CCcEEEEECCCcEEEEeCCC-CCceeECCC--CCCCccceeEECC-CCCEE-EEeCCceEEEecCCCC-CeeEecc
Confidence 998 66666666544333334421 221122221 2456788999988 66655 4556788777642211 1111100
Q ss_pred e---ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee---cCCcceeeeeecCCCCcccccccCcEEE
Q 020107 237 V---CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA---KHGSLAYGADWQRGRSSLEGKRKNSLVA 310 (331)
Q Consensus 237 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 310 (331)
. .....+..+.+.++ +.+++++.++. ++.-.+. ++.-..+. .....++++.|.+++ .++
T Consensus 243 ~~~~~~~~~~~~v~~~~~--~~~~~~g~~g~--i~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~----------~~~ 307 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTP--NEVWLAGGAGA--LLCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPD----------QGF 307 (327)
T ss_dssp CTTSSCCSCEEEEEESSS--SCEEEEESTTC--EEEESST-TSSCEECGGGTTSSSCCCEEEEEETT----------EEE
T ss_pred CCcccCCcceEEEEecCC--CEEEEEeCCCe--EEEeCCC-CcccEEcCccCCCCCCeEEEEEECCC----------ceE
Confidence 1 12345889999886 55666666666 4443332 44444343 234567888887654 456
Q ss_pred EeecCCCeEEEEcC
Q 020107 311 TCSFYDRLLRIWMP 324 (331)
Q Consensus 311 s~~~~d~~i~iW~~ 324 (331)
.++ .+|.|.-++-
T Consensus 308 ~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILG-QKGILLRYVT 320 (327)
T ss_dssp EEC-STTEEEEECC
T ss_pred EEc-CCceEEEEcC
Confidence 666 6998887764
No 258
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.57 E-value=0.00012 Score=61.89 Aligned_cols=206 Identities=9% Similarity=-0.069 Sum_probs=121.1
Q ss_pred ccEEEEEEcCCCCeEEEEec-CCeEEEEEccccc--eeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107 106 SMCLCLEWNPSATSITVGLS-DGSVSIVSVVESQ--LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
..+..++|++.+..|+.+.. .+.|+.+++.... ......+.........+++.+..++++++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 46788999987777766654 7888888887521 01122222233456778887646677777777889999998865
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
.....+.. .-.....|+++|..+.++.+-.. .+.|...++... ....+....-.....|+++|++..++++-..
T Consensus 192 ~~~~l~~~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--~~~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 192 KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp SEEEEEEC---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEeC---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--ccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 43333332 34457899999944444444322 367888888753 2222122333567899999887444444444
Q ss_pred cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+.|..+++.....+.+....+......++++..+ .++++-. ..+.|..++..++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~----------~lywtd~-~~~~V~~~~~~~G 321 (400)
T 3p5b_L 267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG 321 (400)
T ss_dssp TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT----------EEEEEES-SSCSEEEEESSSC
T ss_pred CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC----------EEEEecC-CCCeEEEEEcCCC
Confidence 56666666544322222221122334556776433 4666665 6788888886555
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.57 E-value=1.5e-05 Score=72.07 Aligned_cols=281 Identities=9% Similarity=-0.070 Sum_probs=142.3
Q ss_pred eEeeecCCCCCcEEEEEeecccCC-CCCCCCCcEEEEeccCcccc-eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCC
Q 020107 14 AVEFCPQDSYHHVLAASTYTLQEG-DKPSRNGSISLFNVNAEEKN-LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADAD 91 (331)
Q Consensus 14 ~v~~~~~~~~~~~la~g~~~~~~~-~~~~~~g~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 91 (331)
.+++.|. ++++++.|++..... ........+.+||..+.... +......+.....++++.++ +++++.|+.+
T Consensus 190 ~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~----g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN----GQIVVTGGND 263 (656)
T ss_dssp EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT----SCEEEECSSS
T ss_pred eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC----CCEEEeCCCC
Confidence 4455552 237888887432110 00001126888998877522 22221222333445777888 8899998854
Q ss_pred c-cE-EEecCCCcc------c-CccEEEEEEcCCCCeEEEEe-cC-----CeEEEEEccccceeeeeee--ecccceeEE
Q 020107 92 G-GL-LRDITGEKI------S-SSMCLCLEWNPSATSITVGL-SD-----GSVSIVSVVESQLEVLQQW--KAHEFELWA 154 (331)
Q Consensus 92 g-~i-iw~~~~~~~------~-~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~--~~~~~~v~~ 154 (331)
+ .+ +||..+.+. + ...-.++...++++.++.|+ .+ ..+.+||..++++..+... ......-..
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence 4 45 777665432 1 11113455667899988888 34 5689999988776443110 000000001
Q ss_pred EeeCCCCCcEEEEEcCC---------CeEEEEEccCCCceeeeecccC------CCcceEEEEEecCCCCEEEEEecCC-
Q 020107 155 TSFDVHQPHMVYTGSDD---------CKFSGWDIRESPFKLAFQNSKI------HKMGVCCIASIPSDSNTLLTGSYDE- 218 (331)
Q Consensus 155 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~- 218 (331)
..+.. ++..++.++.+ ..+..||..+............ ....-.++.+...++.+++.|+.++
T Consensus 344 ~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 344 GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 12222 44555555444 3567888877653332222000 0112345555444778888888543
Q ss_pred ----------eEEEEEecCCCCCceeee--eecCCc-eEEEEECCCCCCeEEEEEec-----------CcEEEEEEcCcc
Q 020107 219 ----------YLRVWDVRSISKPVNETS--VCLGGG-VWRIKHHPFIPGLVLAACMH-----------NGFAVVKVGGEK 274 (331)
Q Consensus 219 ----------~i~iwd~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 274 (331)
.|.+||..+. ...... ...... -.++...|++ .+++.+|.+ ..+.+|+....+
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTS--PNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSC--CEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCcCCcceEEEcCCCCCC--CeeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 5777877653 122211 111122 2345666775 566665543 335566665432
Q ss_pred cceeEEeecCCcceeeeeecCCCCcccccccCcEEEEee
Q 020107 275 AEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 275 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 313 (331)
...+..+.........+.+.|++ ++++.||
T Consensus 500 W~~~~~~~~~R~~hs~a~ll~dg---------~v~v~GG 529 (656)
T 1k3i_A 500 FYKQNPNSIVRVYHSISLLLPDG---------RVFNGGG 529 (656)
T ss_dssp EEECCCCSSCCCTTEEEEECTTS---------CEEEEEC
T ss_pred eeecCCCCCccccccHhhcCCCc---------EEEecCC
Confidence 22222222222222334456777 6888888
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.56 E-value=0.00021 Score=59.16 Aligned_cols=202 Identities=8% Similarity=-0.076 Sum_probs=121.7
Q ss_pred ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCc
Q 020107 106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPF 184 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 184 (331)
..+..++|++....|+.+. ..+.|..+++.......+ +.........+++.+.+++++++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 3467899998777766655 478899999886543222 2222234567888765667777777788999999875543
Q ss_pred eeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 185 KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
...+.. .-.....++++|..+.++.+-... +.|..+++... ....+....-.....|+++|++..++++-...+
T Consensus 151 ~~l~~~---~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 151 KVLLWQ---SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EEEECT---TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeC---CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 322222 345678999999455555555455 78888887753 222211223345789999987644555544555
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.|..+++... .....+........++++. .+ .++++-. ..+.|...+..++
T Consensus 226 ~I~~~~~dG~--~~~~~~~~~~~~P~giav~-~~---------~ly~td~-~~~~V~~~~~~~G 276 (349)
T 3v64_C 226 VIERANLDGS--HRKAVISQGLPHPFAITVF-ED---------SLYWTDW-HTKSINSANKFTG 276 (349)
T ss_dssp EEEEEETTSC--SCEEEECSSCSSEEEEEEE-TT---------EEEEEET-TTTEEEEEETTTC
T ss_pred EEEEEeCCCC--ceEEEEeCCCCCceEEEEE-CC---------EEEEecC-CCCeEEEEEccCC
Confidence 6555555432 1112222223455677773 33 4555554 6788888774444
No 261
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=0.00016 Score=65.37 Aligned_cols=73 Identities=11% Similarity=0.179 Sum_probs=50.1
Q ss_pred EEeeCCCCCcEEEEEcCCC-------------------eEEEEEccCCCceeeeecccCCC-------cceEEEEEecCC
Q 020107 154 ATSFDVHQPHMVYTGSDDC-------------------KFSGWDIRESPFKLAFQNSKIHK-------MGVCCIASIPSD 207 (331)
Q Consensus 154 ~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 207 (331)
.+++.| ...+++.++.++ .|..+|.++++.+..++.. .|. .++....+.. +
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~ 310 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-D 310 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-T
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-C
Confidence 356776 556777777665 4999999999877776652 122 2333333333 5
Q ss_pred CC---EEEEEecCCeEEEEEecCCC
Q 020107 208 SN---TLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 208 ~~---~l~~~~~d~~i~iwd~~~~~ 229 (331)
++ .++.++.+|.+.++|.++++
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CcEEEEEEEECCCCEEEEEECCCCC
Confidence 54 68999999999999998864
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00027 Score=57.57 Aligned_cols=221 Identities=7% Similarity=-0.045 Sum_probs=125.1
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCC----Ccc------cCccEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITG----EKI------SSSMCLC 110 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~----~~~------~~~~v~~ 110 (331)
...|+..++.... ...+.. ......+++|.+. +..|. +-..++.| ..++.+ ... .-.....
T Consensus 9 ~~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~----~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 9 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp BSSEEEEETTSCC--CEEEEC-SCSSEEEEEEETT----TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred CCeEEEEECCCcc--eEehhc-CCCceEEEEEEeC----CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 6679999998764 333322 3456789999987 44444 44455666 555544 111 1123467
Q ss_pred EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeee
Q 020107 111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAF 188 (331)
Q Consensus 111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 188 (331)
+++.+.+..|+.+ ...+.|.++++....... .+.........++++|.++.++++-... +.|...++.... ...+
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEE--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 8888766666555 557899999987543221 1222334578999998555555555443 788888886433 3333
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.. ..-.....|+++|..+.+.++-...+.|..+|+... . ...+... .......+++..+ .++++-...+.
T Consensus 159 ~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~~~~~~~~P~giav~~~--~ly~~d~~~~~-- 230 (316)
T 1ijq_A 159 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA-- 230 (316)
T ss_dssp EC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTTSSEEEEEEETT--EEEEEETTTTE--
T ss_pred EE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-c-eEEEeecCCccCCcEEEEEECC--EEEEEECCCCe--
Confidence 21 123567899999834444455556679999998753 2 2221121 1234567777532 45544444455
Q ss_pred EEEEcCcccceeEEe
Q 020107 267 VVKVGGEKAEVLETY 281 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~ 281 (331)
+..+....++.+..+
T Consensus 231 V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 231 IFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEETTTCCCCEEE
T ss_pred EEEEeCCCCcceEEE
Confidence 444433223434444
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00075 Score=62.31 Aligned_cols=253 Identities=15% Similarity=0.165 Sum_probs=144.4
Q ss_pred cEEEEeccCcccceEEeEe-------eecCcEeEEEEcCCCCCCCCeEEEEcC-CccEEEecCCC---------------
Q 020107 45 SISLFNVNAEEKNLELLYR-------MDTAGIFDIKWSPVGGNAGPFLAQADA-DGGLLRDITGE--------------- 101 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~l~~~~~-dg~iiw~~~~~--------------- 101 (331)
-+.+|+..+.. +..+.. .....|.++...++ +. |..|+. +|..+++..+.
T Consensus 231 Gl~~~d~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~----g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~ 303 (781)
T 3v9f_A 231 GLALFNANTET--FTNFHNNPGNIHGALSSYIFSIKQLKD----NK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIRE 303 (781)
T ss_dssp EEEEEETTTTE--EEC-----------CCCCEEEEEECTT----SE-EEEEESSSCEEEEETTCC---------CEEECB
T ss_pred cHheECCCCCc--EEEEEcCCCccccccCceEEEEEECCC----CC-EEEEeCCCCeEEECCCCCeeeeeeccccccccC
Confidence 68888876543 222211 12346899988777 54 444555 55545554332
Q ss_pred -----cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee-------ecccceeEEEeeCCCCCcEEEEEc
Q 020107 102 -----KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW-------KAHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 102 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
......|.++...+++. |-+|+.++-|..++............ ......|.++...+ ++. |..|+
T Consensus 304 ~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt 380 (781)
T 3v9f_A 304 GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGT 380 (781)
T ss_dssp CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEE
T ss_pred CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEe
Confidence 12346788998888775 56677677788898876543222110 01234688888775 444 55666
Q ss_pred CCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--ecCCceEEEE
Q 020107 170 DDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIK 247 (331)
Q Consensus 170 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~ 247 (331)
.++-|..+|..++...............|.++...+ ++. |..|+.++-|..+|.++. + +..... .....|.++.
T Consensus 381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFY 456 (781)
T ss_dssp BSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEE
T ss_pred CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEE
Confidence 667788899875432211110011346789998876 555 455666677888887653 1 222111 1245788998
Q ss_pred ECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecC-----CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 248 HHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH-----GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
..++ +.+.+++. +++..++.... +........ ...|.++...+++ . |..++ .++-|..+
T Consensus 457 ~d~~--g~lwigt~-~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g---------~-lWigt-~~~Gl~~~ 520 (781)
T 3v9f_A 457 EDKN--KKIWIGTH-AGVFVIDLASK--KVIHHYDTSNSQLLENFVRSIAQDSEG---------R-FWIGT-FGGGVGIY 520 (781)
T ss_dssp ECTT--SEEEEEET-TEEEEEESSSS--SCCEEECTTTSSCSCSCEEEEEECTTC---------C-EEEEE-SSSCEEEE
T ss_pred ECCC--CCEEEEEC-CceEEEeCCCC--eEEecccCcccccccceeEEEEEcCCC---------C-EEEEE-cCCCEEEE
Confidence 8887 44555444 77666665442 222211111 3568888888876 3 34444 44457778
Q ss_pred cCCCc
Q 020107 323 MPESD 327 (331)
Q Consensus 323 ~~~~~ 327 (331)
+.+++
T Consensus 521 ~~~~~ 525 (781)
T 3v9f_A 521 TPDMQ 525 (781)
T ss_dssp CTTCC
T ss_pred eCCCC
Confidence 87654
No 264
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.47 E-value=0.00033 Score=57.06 Aligned_cols=213 Identities=7% Similarity=-0.024 Sum_probs=121.6
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCccc-------CccEEEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKIS-------SSMCLCLEW 113 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~~-------~~~v~~~~~ 113 (331)
...|+..+++........... ......+++|.+. +..|. +-...+.| .+++.+.... -.....+++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~----~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGG----GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeC----CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 668999999876422222222 2345779999987 44454 44455555 5665554211 123456888
Q ss_pred cCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc-CCCeEEEEEccCCCceeeeecc
Q 020107 114 NPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS-DDCKFSGWDIRESPFKLAFQNS 191 (331)
Q Consensus 114 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 191 (331)
.+.+..|+.+ ...+.|.+++++......+ ..........+++.|..+.++.+-. ..+.|...++.... ...+..
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~- 162 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIIN- 162 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEEC-
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEE-
Confidence 8755555554 4578899999875432111 2233345688999985555555542 35788888887433 222221
Q ss_pred cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 192 KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 192 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
..-...+.|+++|..+.+.++-+..+.|..+|+.... ...+..........+++..+ .++.+-...+.+..++
T Consensus 163 -~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 163 -SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 235 (318)
T ss_dssp -SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEE
T ss_pred -CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc--eEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEE
Confidence 1234578999998344444555567889999987532 22212223445667777543 4555543444433333
No 265
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.45 E-value=0.00064 Score=62.35 Aligned_cols=222 Identities=7% Similarity=-0.056 Sum_probs=124.3
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc----------cCccEEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI----------SSSMCLCL 111 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~----------~~~~v~~~ 111 (331)
...|+..++.... ...+.. ....+.+|+|.+.. +.++++-...+.| .+++..... .......|
T Consensus 403 ~~~Ir~i~l~~~~--~~~l~~-~~~~~~gl~~d~~~---~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVAS---NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCC--CEEEEC-SCSSEEEEEEETTT---TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccceeEeeccCCc--ceeeec-CCCceEEEeecccC---CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 5678888887654 333322 34567899999862 3344454555556 455543210 11334578
Q ss_pred EEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeeee
Q 020107 112 EWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 112 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~ 189 (331)
++.+.++.|+.+. ..+.|.+.++...... ..+.........|+++|..+.++++-... +.|...++........+.
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEE--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 8887776666654 4789999998754321 22222334578999998555555554333 789888887544322222
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEEE
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFAV 267 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
. .-.....|++++..+.+.++-...+.|..+|+... ....+... .-.....|+...+ .++++-...+. |
T Consensus 555 ~---~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~--I 625 (791)
T 3m0c_C 555 E---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA--I 625 (791)
T ss_dssp S---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTE--E
T ss_pred C---CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC--ceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCE--E
Confidence 2 33568999999834444444456678999998753 22221222 1223456666443 44444434444 4
Q ss_pred EEEcCcccceeEEe
Q 020107 268 VKVGGEKAEVLETY 281 (331)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (331)
+.+....++.+..+
T Consensus 626 ~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 626 FSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEe
Confidence 44443334433333
No 266
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=0.0001 Score=57.46 Aligned_cols=161 Identities=10% Similarity=-0.018 Sum_probs=98.5
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCcccCc---cEEEEEEcCCCC
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEKISSS---MCLCLEWNPSAT 118 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~~~~~---~v~~~~~~~~~~ 118 (331)
..|+++|+++++ .+..+ .. ..........+. ++.|.... .++.+ ++|..+.+.... .-....++++++
T Consensus 65 S~v~~vD~~Tgk-v~~~~-~l-~~~~FgeGit~~----g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~ 137 (262)
T 3nol_A 65 SSIRKVDIESGK-TLQQI-EL-GKRYFGEGISDW----KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQ 137 (262)
T ss_dssp EEEEEECTTTCC-EEEEE-EC-CTTCCEEEEEEE----TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSS
T ss_pred ceEEEEECCCCc-EEEEE-ec-CCccceeEEEEe----CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCC
Confidence 489999999886 33333 22 223333223333 33454444 45566 888887654210 001223345778
Q ss_pred eEEEEecCCeEEEEEccccceeeeeeeec--ccce---eEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-
Q 020107 119 SITVGLSDGSVSIVSVVESQLEVLQQWKA--HEFE---LWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK- 192 (331)
Q Consensus 119 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 192 (331)
.|+.+..++.|.++|..+.+. +..+.. ...+ ++.+.|. ++.+++..-.+..|.+.|.++++....+....
T Consensus 138 ~L~~SdGs~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L 213 (262)
T 3nol_A 138 YLIMSDGTPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGI 213 (262)
T ss_dssp CEEECCSSSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTG
T ss_pred EEEEECCCCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcC
Confidence 888887788999999988654 333322 2223 4457775 56777777678999999999999877766511
Q ss_pred --------CCCcceEEEEEecCCCCEEEEEec
Q 020107 193 --------IHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 193 --------~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
......+.|+++| +.+.|++.+.
T Consensus 214 ~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTGK 244 (262)
T 3nol_A 214 LAEAGPLPSPIDVLNGIAWDK-EHHRLFVTGK 244 (262)
T ss_dssp GGGSCSCCSSCCCEEEEEEET-TTTEEEEEET
T ss_pred ccccccccCcCCceEEEEEcC-CCCEEEEECC
Confidence 1124579999999 6555555554
No 267
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.41 E-value=0.00019 Score=63.50 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=36.5
Q ss_pred eEEEEEccCCCceeeeecccCC--------CcceEEEEEecCCC---CEEEEEecCCeEEEEEecCCC
Q 020107 173 KFSGWDIRESPFKLAFQNSKIH--------KMGVCCIASIPSDS---NTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 173 ~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~ 229 (331)
.|..+|.++++.+..++.. .| ..++. +...+ ++ ..++.++.+|.+.++|..+++
T Consensus 273 ~v~Ald~~tG~~~W~~~~~-~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKT-PHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp EEEEEETTTCCEEEEEESS-TTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEecCCCcEEEEecCC-CCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 6999999999877666642 12 12222 22223 56 367788899999999998863
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=0.00021 Score=55.71 Aligned_cols=181 Identities=8% Similarity=-0.037 Sum_probs=114.7
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcccCc----cEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeee
Q 020107 69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKISSS----MCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVL 142 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 142 (331)
...+.|+. +.++.+.+.+|.+ ..|+.+++.... ........++++.|.... .++.+.+||..+.+. +
T Consensus 57 tqGL~~~~-----~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~ 129 (268)
T 3nok_A 57 TQGLVFHQ-----GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--E 129 (268)
T ss_dssp EEEEEEET-----TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--E
T ss_pred cceEEEEC-----CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--E
Confidence 57888873 5677888888888 888887765322 122211223445555544 489999999988754 5
Q ss_pred eeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCc---ceEEEEEecCCCCEEEEEecCCe
Q 020107 143 QQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKM---GVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
.++... ..-..+++ ++..|+.+..++.|.++|..+.+....+.... +.. .++.+.|. ++.+.+..-.+..
T Consensus 130 ~ti~~~-~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~lNeLe~~--dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVELINELECA--NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCcccccccccEEe--CCEEEEEECCCCe
Confidence 555532 22345553 34556666679999999999988776666511 222 45677876 5666655557889
Q ss_pred EEEEEecCCCCCceeeeee------------cCCceEEEEECCCCCCeEEEEEecCc
Q 020107 220 LRVWDVRSISKPVNETSVC------------LGGGVWRIKHHPFIPGLVLAACMHNG 264 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~ 264 (331)
|.+.|.+++ +.+..+... ...-.+.|+|+|+.+.+++++-....
T Consensus 203 I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~ 258 (268)
T 3nok_A 203 VLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPR 258 (268)
T ss_dssp EEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSE
T ss_pred EEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCc
Confidence 999999986 433332111 12356889999988555555434444
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00051 Score=55.65 Aligned_cols=221 Identities=6% Similarity=-0.043 Sum_probs=123.0
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+..++|.+.+ +++++-. .++.|..|+.+... .... . .......+++.++ ++++++..
T Consensus 32 ~~pegia~~~~g---~lyv~d~----------~~~~I~~~d~~g~~--~~~~-~-~~~~p~gia~~~d----G~l~vad~ 90 (306)
T 2p4o_A 32 TFLENLASAPDG---TIFVTNH----------EVGEIVSITPDGNQ--QIHA-T-VEGKVSGLAFTSN----GDLVATGW 90 (306)
T ss_dssp CCEEEEEECTTS---CEEEEET----------TTTEEEEECTTCCE--EEEE-E-CSSEEEEEEECTT----SCEEEEEE
T ss_pred CCcceEEECCCC---CEEEEeC----------CCCeEEEECCCCce--EEEE-e-CCCCceeEEEcCC----CcEEEEec
Confidence 456678887754 6666654 58899999877542 2222 2 2346889999999 77655543
Q ss_pred C-Cc-cE-EEecCCCccc-------CccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeee--------eeecccce
Q 020107 90 A-DG-GL-LRDITGEKIS-------SSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQ--------QWKAHEFE 151 (331)
Q Consensus 90 ~-dg-~i-iw~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~ 151 (331)
. ++ .+ .++..+++.. ......++..+.+..+++-..++.|..+|...++..... .....-..
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 3 23 24 3444443321 112233444444433444445889999997653211110 00011112
Q ss_pred eEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCc--eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC
Q 020107 152 LWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPF--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI 228 (331)
Q Consensus 152 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 228 (331)
...+ +|+.+.++++-...+.|..+|+.. ++. ...+.. ......+++.+ +++++++....+.|.++|.. +
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-C
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-C
Confidence 3444 663445666667788999999875 321 112211 12456688899 88887777778899999875 2
Q ss_pred CCCcee-eeeecCCceEEEEEC---CCCCCeEEEEEe
Q 020107 229 SKPVNE-TSVCLGGGVWRIKHH---PFIPGLVLAACM 261 (331)
Q Consensus 229 ~~~~~~-~~~~~~~~v~~~~~~---~~~~~~~~~~~~ 261 (331)
+.... .........++++|. |++ +.++++..
T Consensus 243 -~~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~ 277 (306)
T 2p4o_A 243 -STTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTN 277 (306)
T ss_dssp -CEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEEC
T ss_pred -CEEEEeecccccCCceEEEEecccCCC-CEEEEECC
Confidence 22111 011122568999998 776 44444443
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.00072 Score=57.05 Aligned_cols=222 Identities=8% Similarity=-0.039 Sum_probs=126.8
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCCCc----c------cCccEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITGEK----I------SSSMCLC 110 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~~~----~------~~~~v~~ 110 (331)
...|+..+++... ...+. .....+..|+|.+. +..|..+. ..+.| .+++.... . .......
T Consensus 91 ~~~I~~i~l~~~~--~~~~~-~~~~~~~~l~~d~~----~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 91 RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp TTEEEEECTTSCS--CEEEE-CSCSCEEEEEEETT----TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred cceeEEEccCCcc--eeEec-cccCcceEEeeeec----cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 6788888888764 33332 23456889999987 44555544 45555 55554311 1 1234568
Q ss_pred EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-CCeEEEEEccCCCceeee
Q 020107 111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-DCKFSGWDIRESPFKLAF 188 (331)
Q Consensus 111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~ 188 (331)
+++.+.+..|+.+ ...+.|.+.+++.... ...+.........++++|..+.++++-.. .+.|...++.........
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8888755555555 4578999999876433 22222233457899999855555555433 478888888754432222
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeee--cCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVC--LGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.. .-.....|+++|..+.+.++-...+.|..+|+.... ...+... .......++...+ .++.+-...+.
T Consensus 242 ~~---~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~~-- 312 (400)
T 3p5b_L 242 TE---NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVFED--KVFWTDIINEA-- 312 (400)
T ss_dssp CS---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--CEEEEECSSTTSSEEEEEEETT--EEEEEESSSCS--
T ss_pred EC---CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc--cEEEEeCCCCCCCCEEEEEeCC--EEEEecCCCCe--
Confidence 22 235678999998344444444567789999987532 2221121 2234556776433 55555545555
Q ss_pred EEEEcCcccceeEEee
Q 020107 267 VVKVGGEKAEVLETYA 282 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~ 282 (331)
|+.+....++.+..+.
T Consensus 313 V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEESSSCCCCEEEE
T ss_pred EEEEEcCCCCceEEEe
Confidence 4444333344444443
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.38 E-value=5e-05 Score=68.63 Aligned_cols=167 Identities=12% Similarity=0.084 Sum_probs=97.2
Q ss_pred EEEEcCCCCeEEEEecCCe-------------------EEEEEccccceeeeeeeeccc-------ceeEEEeeCCCCCc
Q 020107 110 CLEWNPSATSITVGLSDGS-------------------VSIVSVVESQLEVLQQWKAHE-------FELWATSFDVHQPH 163 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~ 163 (331)
.+++.|+...+++++.++. |..+|.++++..-......|. .+.....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 4678888888988887763 999999998753222222222 1222222221 333
Q ss_pred ---EEEEEcCCCeEEEEEccCCCceeeeeccc---------CCCcc------------------------eEEEEEecCC
Q 020107 164 ---MVYTGSDDCKFSGWDIRESPFKLAFQNSK---------IHKMG------------------------VCCIASIPSD 207 (331)
Q Consensus 164 ---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~------------------------v~~~~~~~~~ 207 (331)
.++.++.+|.++++|.++++.+....... ....+ -..++++| +
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~ 391 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-G 391 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-T
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-C
Confidence 68889999999999999998653322100 00000 01256777 4
Q ss_pred CCEEEEE------------------------------------ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 208 SNTLLTG------------------------------------SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 208 ~~~l~~~------------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
..++++. ..+|.|..||+.+++ .+-+ .....+.....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~-~~W~--~~~~~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK-AAWK--VPYPTHWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE-EEEE--EEESSSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc-EEEE--ccCCCCCcCceeEeC
Confidence 4444431 124789999998863 3333 233333333333333
Q ss_pred CCCeEEEEEecCcEEEEEEcCcccceeEEeecC
Q 020107 252 IPGLVLAACMHNGFAVVKVGGEKAEVLETYAKH 284 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 284 (331)
+ +++++++.++.++.++... ++.+..++..
T Consensus 469 g-g~vf~g~~dg~l~a~d~~t--G~~l~~~~~~ 498 (668)
T 1kv9_A 469 G-NLVFQGTAAGQMHAYSADK--GEALWQFEAQ 498 (668)
T ss_dssp T-TEEEEECTTSEEEEEETTT--CCEEEEEECS
T ss_pred C-CEEEEECCcccchhhhhhc--ChhheEecCC
Confidence 3 6777777778777777654 6777777643
No 272
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.37 E-value=0.00054 Score=55.83 Aligned_cols=202 Identities=9% Similarity=-0.113 Sum_probs=121.1
Q ss_pred cEEEEEEcCCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCce
Q 020107 107 MCLCLEWNPSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFK 185 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 185 (331)
....++|++.+..|+.+. ..+.|..+++...... ...+...-.....+++.+.+++++++-...+.|.++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 456888998766665554 4788999998765321 11122222345678887656677777777889999998754432
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecC
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHN 263 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 263 (331)
..+.. .......+++.| .+..|+... ..+.|...++... ....+....-.....|+++|++..++++-...+
T Consensus 115 ~l~~~---~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 115 VLFWQ---ELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp EEECS---SCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEeC---CCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC--CeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 22222 345678999998 544444444 3577888887642 222211222345689999997644555544556
Q ss_pred cEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCcc
Q 020107 264 GFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESDC 328 (331)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~~ 328 (331)
.|..+++.....+.+ ..+......++++..+ .++.+-. ..+.|..++..++.
T Consensus 189 ~I~~~d~dG~~~~~~--~~~~~~~P~glav~~~----------~lywtd~-~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 189 FIHKSNLDGTNRQAV--VKGSLPHPFALTLFED----------ILYWTDW-STHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTSCSCEEE--ECSCCSCEEEEEEETT----------EEEEEET-TTTEEEEEETTTCC
T ss_pred EEEEEcCCCCceEEE--ecCCCCCceEEEEeCC----------EEEEEec-CCCeEEEEECCCCC
Confidence 655666543211211 2223344567777543 4666655 78889988886654
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.37 E-value=0.00099 Score=59.11 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=37.9
Q ss_pred CeEEEEEccCCCceeeeecccCCC--------cceEEEEEe-cCCC---CEEEEEecCCeEEEEEecCCC
Q 020107 172 CKFSGWDIRESPFKLAFQNSKIHK--------MGVCCIASI-PSDS---NTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~ 229 (331)
+.|.-+|.++++.+..++. ..|. .++. +... . ++ ..++.++.+|.++++|.++++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~-~~~d~wd~~~~~~p~l-~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQH-TPNDAWDFSGNNELVL-FDYKAK-DGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp SEEEEECTTTCCEEEEEES-STTCCSCCCCCCCCEE-EEEECS-SSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCCEEEEEeC-CCCCcccccCCCCcEE-EeeecC-CCCEEEEEEEECCCceEEEEECCCCC
Confidence 6899999999988777665 2132 1221 2222 3 55 478889999999999998863
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.37 E-value=0.00024 Score=63.08 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=37.9
Q ss_pred CeEEEEEccCCCceeeeecccCCC--------cceEEEEEe-cCCC---CEEEEEecCCeEEEEEecCCC
Q 020107 172 CKFSGWDIRESPFKLAFQNSKIHK--------MGVCCIASI-PSDS---NTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~ 229 (331)
+.|.-+|.++++.+..++. ..|. .++. +... . ++ ..++.++.+|.+.++|.++++
T Consensus 278 ~sv~Ald~~TG~~~W~~q~-~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQK-TPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SEEEEEETTTCCEEEEEES-STTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCceeeEeec-CCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCC
Confidence 4899999999988777665 2232 1222 2222 3 56 567888899999999998864
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.34 E-value=0.00045 Score=53.27 Aligned_cols=159 Identities=9% Similarity=-0.021 Sum_probs=97.8
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEe--EEEEcCCCCCCCCeEEEEcCCccE-EEecCCCccc-----CccEEEEEEc
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIF--DIKWSPVGGNAGPFLAQADADGGL-LRDITGEKIS-----SSMCLCLEWN 114 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~-----~~~v~~~~~~ 114 (331)
...|+.+|+++++ .+..+ ... .... .++... +++......++.+ ++|..+.+.. ...-..+ .
T Consensus 42 ~S~v~~vD~~tgk-v~~~~-~l~-~~~fgeGi~~~~-----~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t 111 (243)
T 3mbr_X 42 RSSVRKVDLETGR-ILQRA-EVP-PPYFGAGIVAWR-----DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--T 111 (243)
T ss_dssp SCEEEEEETTTCC-EEEEE-ECC-TTCCEEEEEEET-----TEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--E
T ss_pred CceEEEEECCCCC-EEEEE-eCC-CCcceeEEEEeC-----CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--e
Confidence 4589999999886 33332 211 2222 333332 3344445556666 8888776542 1122233 3
Q ss_pred CCCCeEEEEecCCeEEEEEccccceeeeeeee--cccc---eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 115 PSATSITVGLSDGSVSIVSVVESQLEVLQQWK--AHEF---ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 115 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
++++.|+++..++.|.++|..+.+. +..+. .+.. .++.+.|. ++..++..-.+..|.+.|.++++....+.
T Consensus 112 ~dg~~L~vSdgs~~l~~iDp~t~~~--~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 112 SDDSHLYMSDGTAVIRKLDPDTLQQ--VGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp ECSSCEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred eCCCEEEEECCCCeEEEEeCCCCeE--EEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 5778888888899999999988654 33333 2222 34566665 55666666678899999999999877766
Q ss_pred ccc----------CCCcceEEEEEecCCCCEEEEEec
Q 020107 190 NSK----------IHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 190 ~~~----------~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
... ....-.+.|+++| +++.|++.+.
T Consensus 188 l~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK 223 (243)
T 3mbr_X 188 LQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK 223 (243)
T ss_dssp CGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred CCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence 421 1224579999999 5544444443
No 276
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.34 E-value=0.00047 Score=63.23 Aligned_cols=206 Identities=9% Similarity=-0.065 Sum_probs=116.2
Q ss_pred ccEEEEEEcCCCCeEEEEe-cCCeEEEEEccccce--eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC
Q 020107 106 SMCLCLEWNPSATSITVGL-SDGSVSIVSVVESQL--EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES 182 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 182 (331)
..+..|+|++....|+.+. ..+.|+.+++..... .....+.........|++.+..++++++-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4567899998666665554 467888888875211 1122222233456678887645677777778899999999855
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEe
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
.....+.. .-.....|++.|..+.++++-... +.|...++... ....+....-.....|++.+....++++-..
T Consensus 504 ~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 504 KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp SEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--ceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 43333322 345689999999334444443233 67888888653 2333223333578899999876344444444
Q ss_pred cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 262 HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
.+.|..+++.......+..-.+.-....+|++..+ +++++-. ..+.|...+..++
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~----------~lYwtD~-~~~~I~~~dk~tG 633 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG 633 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT----------EEEEEET-TTTEEEEEETTTC
T ss_pred CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC----------EEEEEEC-CCCEEEEEeCCCC
Confidence 45555555543212222111112223446666433 3555554 6677777765444
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.0019 Score=59.62 Aligned_cols=253 Identities=9% Similarity=0.055 Sum_probs=144.0
Q ss_pred CCcEEEEeccCcccceEEeEe--------------eecCcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCC------
Q 020107 43 NGSISLFNVNAEEKNLELLYR--------------MDTAGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGE------ 101 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~------ 101 (331)
.+-|.+++..... +..... .....|.++...++ +. |-.|+.++-+ .++....
T Consensus 277 ~~Gl~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~----g~-lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 277 LNGIMILDLQQNQ--FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF----NN-IWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp SSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSS----CC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred CCCeEEECCCCCe--eeeeeccccccccCCCCCCCCCCCeEEEEEEeCC----CC-EEEEecCCeEEEeCCCCCcceeec
Confidence 4668888877653 222111 12346888888777 54 4455544444 5544322
Q ss_pred ---------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeee-eecccceeEEEeeCCCCCcEEEEEcCC
Q 020107 102 ---------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQ-WKAHEFELWATSFDVHQPHMVYTGSDD 171 (331)
Q Consensus 102 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 171 (331)
......|.++...+++. |.+|+.++-|..++..++....... .......|.++...+ ++. |..|+.+
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~ 426 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYL 426 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETT
T ss_pred cCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEecc
Confidence 12345688888887765 5566766778889987654322210 012335688888775 444 4456766
Q ss_pred CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeec-----CCceEEE
Q 020107 172 CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCL-----GGGVWRI 246 (331)
Q Consensus 172 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~ 246 (331)
+-|..+|..+++.. .+.........|.++...+ ++. |..|+. +-|..||..+.. .... .... ...|.++
T Consensus 427 ~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 427 GNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKK-VIHH-YDTSNSQLLENFVRSI 500 (781)
T ss_dssp EEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSS-CCEE-ECTTTSSCSCSCEEEE
T ss_pred CCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCe-EEec-ccCcccccccceeEEE
Confidence 77889998776532 2221011356789998877 554 455555 558889987642 2111 1111 3578899
Q ss_pred EECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec----CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 247 KHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK----HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
...+++ .+.+++..+++.. +... ......+.. ....|.++...+++ . |..++ .+|.|..|
T Consensus 501 ~~d~~g--~lWigt~~~Gl~~--~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g---------~-lWi~T-~~Glv~~~ 564 (781)
T 3v9f_A 501 AQDSEG--RFWIGTFGGGVGI--YTPD-MQLVRKFNQYEGFCSNTINQIYRSSKG---------Q-MWLAT-GEGLVCFP 564 (781)
T ss_dssp EECTTC--CEEEEESSSCEEE--ECTT-CCEEEEECTTTTCSCSCEEEEEECTTS---------C-EEEEE-TTEEEEES
T ss_pred EEcCCC--CEEEEEcCCCEEE--EeCC-CCeEEEccCCCCCCCCeeEEEEECCCC---------C-EEEEE-CCCceEEE
Confidence 888874 4555555567444 4333 223333331 23467888887776 3 44445 56655888
Q ss_pred cCCCc
Q 020107 323 MPESD 327 (331)
Q Consensus 323 ~~~~~ 327 (331)
|..++
T Consensus 565 d~~~~ 569 (781)
T 3v9f_A 565 SARNF 569 (781)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 87665
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00082 Score=52.53 Aligned_cols=194 Identities=9% Similarity=0.053 Sum_probs=120.8
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
..+..++|.|... .++|+.. .++.|...|.. +. .++.+.-.-......|++.++ +.++++.-
T Consensus 27 ~~lSGla~~~~~~--~L~aV~d----------~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~----g~~~vs~E 88 (255)
T 3qqz_A 27 NNISSLTWSAQSN--TLFSTIN----------KPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGD----NQFVISDE 88 (255)
T ss_dssp SCEEEEEEETTTT--EEEEEEE----------TTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECST----TEEEEEET
T ss_pred cCcceeEEeCCCC--EEEEEEC----------CCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCC----CEEEEEEC
Confidence 4578889998752 4566565 68888888887 32 344332222245778888877 66656554
Q ss_pred CCccE-EEecCCC---------------cccCccEEEEEEcCCCCeEEEEecCCeEEEEEcccc-ceeeeeeee------
Q 020107 90 ADGGL-LRDITGE---------------KISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVES-QLEVLQQWK------ 146 (331)
Q Consensus 90 ~dg~i-iw~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------ 146 (331)
.++.+ +.++... ...+.....++|+|.++.|+++.+.....+|.+..- ....+..+.
T Consensus 89 ~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 89 RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 55555 3332211 112445689999999988888887666666665410 000011111
Q ss_pred -cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCC------CcceEEEEEecCCCCEEEEEecCCe
Q 020107 147 -AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIH------KMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 147 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
.+...+.+++++|..+++++....+..|.++|.. ++....+...++. -...-.|+|.+ ++++.++ ++.+.
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~ 245 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIV-SEPNR 245 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEE-ETTTE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEE-cCCce
Confidence 1233578999999888888888899999999977 4455555552211 12568899999 8875554 67665
Q ss_pred EEEEE
Q 020107 220 LRVWD 224 (331)
Q Consensus 220 i~iwd 224 (331)
+..|.
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.0015 Score=55.62 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=93.7
Q ss_pred EeEEEEcC-CCCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEec-CC----eEEEEEccc
Q 020107 69 IFDIKWSP-VGGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLS-DG----SVSIVSVVE 136 (331)
Q Consensus 69 v~~~~~~~-~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~ 136 (331)
...|+++| + +..|.++...+.+ .+++.+... .......++|+++++.|+++.. ++ .+.+++. .
T Consensus 139 P~~lavdp~~----~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 139 AVWLSFDPKN----HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCEEEEETTE----EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCEEEECCCC----CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 56788887 4 3456555554555 666655432 2345778999999997766654 22 3444443 3
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCE-EEEEe
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNT-LLTGS 215 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~ 215 (331)
+.......+.. ......++++|.++.++++-..++.|..+|...+........ . .......|+|+| ++++ +++-.
T Consensus 214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~-~~~~P~gia~~p-dG~~lyv~d~ 289 (430)
T 3tc9_A 214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-Q-DSGWEFHIQFHP-SGNYAYIVVV 289 (430)
T ss_dssp GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-S-SSSCCEEEEECT-TSSEEEEEET
T ss_pred Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-C-CCCcceeEEEcC-CCCEEEEEEC
Confidence 33321122221 234567889985667777777788999999986643222222 1 224578999999 8884 45555
Q ss_pred cCCeEEEEEecC
Q 020107 216 YDEYLRVWDVRS 227 (331)
Q Consensus 216 ~d~~i~iwd~~~ 227 (331)
..+.|..++...
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 678999988874
No 280
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.25 E-value=7.5e-06 Score=74.26 Aligned_cols=203 Identities=9% Similarity=-0.070 Sum_probs=115.0
Q ss_pred cEEEEEEcCCCCeEEEEec-CCeEEEEEccc----cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 107 MCLCLEWNPSATSITVGLS-DGSVSIVSVVE----SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
.+..++|++.+..|+.+.. .+.|+.+++.. ... ...+.........+++.+..++++++-...+.|.++++..
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~--~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC--CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce--EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 4567889987777776654 67899998875 111 1112111223456777754566666666778999999876
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-CeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEE
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-EYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 260 (331)
......+.. .......|+++|..+.++++-... +.|..+++..... ..+....-.....|+|+|++..++++-.
T Consensus 485 ~~~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 485 VKRKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CCEEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred CceEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 543222222 234467888998344444443233 6788887764322 1111122345678999998756666655
Q ss_pred ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 261 MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..+.|..+++.....+.+...........++++..+ .++++.. ..+.|..++..++
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~----------~lywtd~-~~~~V~~~d~~~G 615 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----------KVFWTDI-INEAIFSANRLTG 615 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT----------EEEEECS-TTTCEEEEETTTE
T ss_pred CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC----------EEEEEeC-CCCeEEEEEccCC
Confidence 556655555543211111111111223445666544 4666665 7889998887654
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0017 Score=55.36 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=90.2
Q ss_pred cceeEeeecC-CCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc
Q 020107 11 NADAVEFCPQ-DSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD 89 (331)
Q Consensus 11 ~~~~v~~~~~-~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 89 (331)
.+..|++.|. . ..|.+.. ..+.|+.++++... +..+.. .......|+|+++ ++.|+++.
T Consensus 138 ~P~~lavdp~~~---g~Lyv~d----------~~~~I~~id~~~~~--v~~~~~-~~~~P~~ia~d~~----G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNH---NHLYLVG----------EQHPTRLIDFEKEY--VSTVYS-GLSKVRTICWTHE----ADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEE---EEEEEEE----------BTEEEEEEETTTTE--EEEEEC-CCSCEEEEEECTT----SSEEEEEE
T ss_pred CCCEEEECCCCC---CeEEEEe----------CCCcEEEEECCCCE--EEEEec-CCCCcceEEEeCC----CCEEEEEe
Confidence 4567777763 3 3444443 23788888887754 444422 3455889999999 77555554
Q ss_pred C-Ccc----EEEecCCCccc-------CccEEEEEEcC-CCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEe
Q 020107 90 A-DGG----LLRDITGEKIS-------SSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATS 156 (331)
Q Consensus 90 ~-dg~----iiw~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 156 (331)
. ++. ++|........ ......++++| ++..+++-..++.|..++...+....+.... .......++
T Consensus 198 ~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia 276 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQ 276 (430)
T ss_dssp CCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEE
T ss_pred CCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEE
Confidence 4 222 23322222111 12345788999 5555555556889999998865432222222 123467899
Q ss_pred eCCCCCc-EEEEEcCCCeEEEEEccC
Q 020107 157 FDVHQPH-MVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 157 ~~~~~~~-~l~~~~~dg~i~i~d~~~ 181 (331)
|+| +++ ++++-...+.|..++...
T Consensus 277 ~~p-dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 277 FHP-SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred EcC-CCCEEEEEECCCCEEEEEeCCc
Confidence 999 666 666666788999988764
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.23 E-value=0.00055 Score=60.64 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=98.9
Q ss_pred EEEcCCCCeEEEEecC----------------CeEEEEEccccceeeeeeeeccc--------ceeEEEeeCCCCC---c
Q 020107 111 LEWNPSATSITVGLSD----------------GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFDVHQP---H 163 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~---~ 163 (331)
+++.++...++.+..+ +.|..+|.++++..-......|. .++. +...+ ++ .
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~ 317 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTP 317 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEE
Confidence 4566766777776642 36899999988753222222221 1111 11112 34 3
Q ss_pred EEEEEcCCCeEEEEEccCCCceeeeecccC----------CCcce--------------------------EEEEEecCC
Q 020107 164 MVYTGSDDCKFSGWDIRESPFKLAFQNSKI----------HKMGV--------------------------CCIASIPSD 207 (331)
Q Consensus 164 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v--------------------------~~~~~~~~~ 207 (331)
.++.++.+|.+.++|..+++.+..+..... ...++ ..++++| +
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~ 396 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-E 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-T
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-C
Confidence 577888999999999999986655443110 00111 2357777 5
Q ss_pred CCEEEEEe-------------------------------------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECC
Q 020107 208 SNTLLTGS-------------------------------------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP 250 (331)
Q Consensus 208 ~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 250 (331)
..++++.. .++.|..||+.+++ .+-+ ..+...+.......
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~-~~W~--~~~~~~~~~~~~~t 473 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK-AKWT--KWEKFAAWGGTLYT 473 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC-EEEE--EEESSCCCSBCEEE
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC-EEEE--ecCCCCccceeEEE
Confidence 55665543 24788899988864 3333 23333333222222
Q ss_pred CCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCc-ceeeeeecCCC
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGS-LAYGADWQRGR 297 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~ 297 (331)
.+ +.+++++.++.++.++... ++.+.++..... .-.-+.+..++
T Consensus 474 ~g-g~v~~g~~dg~l~a~D~~t--G~~lw~~~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 474 KG-GLVWYATLDGYLKALDNKD--GKELWNFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp TT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETT
T ss_pred CC-CEEEEEcCCCeEEEEECCC--CCEEEEEeCCCCcEeeeEEEEECC
Confidence 23 6677777778877777654 677777763322 11223455666
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.21 E-value=0.0011 Score=51.81 Aligned_cols=201 Identities=10% Similarity=0.067 Sum_probs=121.3
Q ss_pred ccEEEEEEcCCCCeEE-EEecCCeEEEEEccccceeeeeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCC
Q 020107 106 SMCLCLEWNPSATSIT-VGLSDGSVSIVSVVESQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESP 183 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 183 (331)
..+..++|+|+++.|+ +...++.|...|.. ++. +..+. ........+++.+ ++.++++.-.++.+.++++....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--IRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--EEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--EEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 4688999999876655 46678889999987 554 33332 1224577888886 66776776677899999887654
Q ss_pred ce---eeeec---ccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCC--CCCceeee------eecCCceEEEEEC
Q 020107 184 FK---LAFQN---SKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSI--SKPVNETS------VCLGGGVWRIKHH 249 (331)
Q Consensus 184 ~~---~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~------~~~~~~v~~~~~~ 249 (331)
.+ ..... ........-.|+|+| .++.|.++.+.....+|.++.. ...+.... ..+...+..++++
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 21 12211 012455679999999 7766666666555666666521 11122110 0123457899999
Q ss_pred CCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCC---------cceeeeeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 250 PFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHG---------SLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
|....+++.+..... ++.+... ++.+..+.-.. ..-.+++|.+++ ++.++ + +.+.++
T Consensus 182 p~tg~lliLS~~s~~--L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G---------~lyIv-s-E~n~~y 247 (255)
T 3qqz_A 182 QQKNTLLVLSHESRA--LQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG---------NIYIV-S-EPNRFY 247 (255)
T ss_dssp TTTTEEEEEETTTTE--EEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC---------CEEEE-E-TTTEEE
T ss_pred CCCCeEEEEECCCCe--EEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC---------CEEEE-c-CCceEE
Confidence 987444444444444 4444333 55555444211 245789999998 45444 5 677777
Q ss_pred EEcCC
Q 020107 321 IWMPE 325 (331)
Q Consensus 321 iW~~~ 325 (331)
.+...
T Consensus 248 ~f~~~ 252 (255)
T 3qqz_A 248 RFTPQ 252 (255)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 76544
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.20 E-value=0.0021 Score=54.82 Aligned_cols=235 Identities=8% Similarity=-0.009 Sum_probs=127.5
Q ss_pred cceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcC
Q 020107 11 NADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADA 90 (331)
Q Consensus 11 ~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 90 (331)
.+..|++.|.+..++++++-. .+.|+.+++.++. +..+. ........++++++ +.++++-..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~-----------~~~I~~id~~~g~--v~~~~-~~~~~P~giavd~d----G~lyVad~~ 201 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ-----------RDAFRHVDFVNQY--VDIKT-TNIGQCADVNFTLN----GDMVVVDDQ 201 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB-----------TSCEEEEETTTTE--EEEEC-CCCSCEEEEEECTT----CCEEEEECC
T ss_pred CCceEEEccccCCCEEEEEeC-----------CCCEEEEECCCCE--EEEee-cCCCCccEEEECCC----CCEEEEcCC
Confidence 356777777411124444433 3789999987654 44432 23445899999999 775544432
Q ss_pred C---cc-EEEecCCCcc-------cCccEEEEEEcC-CCCeEEEEecCCeEEEEEccccce-eeeeeeecccceeEEEee
Q 020107 91 D---GG-LLRDITGEKI-------SSSMCLCLEWNP-SATSITVGLSDGSVSIVSVVESQL-EVLQQWKAHEFELWATSF 157 (331)
Q Consensus 91 d---g~-iiw~~~~~~~-------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~ 157 (331)
. .. +++-...... .-.....++++| ++.+.++-..++.|+.++..++.. ..+.... ....-..++|
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~ 280 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVW 280 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEE
T ss_pred CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEE
Confidence 2 11 2221111111 112335678888 555444444678999999886653 1221111 1222346999
Q ss_pred CCCCCc-EEEEEcCCCeEEEEEccC--CCc--eeeeecc---cC---------CCcceEEEEE---------ecCCCCEE
Q 020107 158 DVHQPH-MVYTGSDDCKFSGWDIRE--SPF--KLAFQNS---KI---------HKMGVCCIAS---------IPSDSNTL 211 (331)
Q Consensus 158 ~~~~~~-~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~---~~---------~~~~v~~~~~---------~~~~~~~l 211 (331)
+| +++ ++++-...+.|+.++... +.. ...+... .+ .-.....+++ .+ +++++
T Consensus 281 dp-dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~ly 358 (433)
T 4hw6_A 281 HP-TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFY 358 (433)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEE
T ss_pred eC-CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEE
Confidence 99 555 666666778999988753 221 1111110 00 1123677888 55 66777
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeec------------------CCceEEEEECCCCCCeEEEEEecCcEEEEEE
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCL------------------GGGVWRIKHHPFIPGLVLAACMHNGFAVVKV 270 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (331)
++-...+.|+.++.. + . +.. ..+. -.....|++.|....++++-...+.|+.+.+
T Consensus 359 vaD~~n~~I~~~~~~-G-~-v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 359 FCDRDSHTVRVLTPE-G-R-VTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEETTTTEEEEECTT-S-E-EEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECCCCEEEEECCC-C-C-EEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 776677889998852 2 1 222 1111 1236789999433244444445556555544
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.05 E-value=0.0028 Score=51.66 Aligned_cols=201 Identities=10% Similarity=0.173 Sum_probs=115.5
Q ss_pred cCCCCCCCCeEEEEcCCccE-EEecCCCccc---CccEEEEEEcC----CCCe--EEEE-ec---CCeEEEEEcc--ccc
Q 020107 75 SPVGGNAGPFLAQADADGGL-LRDITGEKIS---SSMCLCLEWNP----SATS--ITVG-LS---DGSVSIVSVV--ESQ 138 (331)
Q Consensus 75 ~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~~---~~~v~~~~~~~----~~~~--l~~~-~~---dg~i~i~d~~--~~~ 138 (331)
+|.++. ..+++.....+-+ ++++...... ...++.+..-| .++. ++.+ .. +++|.+|++. ++.
T Consensus 34 ~~~dp~-~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 34 DPKTPQ-NSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp CSSCGG-GCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CCCCCC-ccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 455443 4455555555555 8888554432 34556655544 2222 3333 33 4789999774 333
Q ss_pred eeeeee----eecccceeEEEee--CCCCCc-EEEEEcCCCeEEEEEccC-------CCceeeeecccCCCcceEEEEEe
Q 020107 139 LEVLQQ----WKAHEFELWATSF--DVHQPH-MVYTGSDDCKFSGWDIRE-------SPFKLAFQNSKIHKMGVCCIASI 204 (331)
Q Consensus 139 ~~~~~~----~~~~~~~v~~~~~--~~~~~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~ 204 (331)
+..+.. +......+..+++ +|..+. ++++...+|.+..|++.. .+.+..+.. ...+-.+...
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvD 188 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAAD 188 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEE
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEc
Confidence 322211 1111145667777 664443 678888899999999842 233445554 4578888888
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCC----CCceeee-eecCCceEEEEE--CCCCCCeEEEEE-ecCcEEEEEEcCcccc
Q 020107 205 PSDSNTLLTGSYDEYLRVWDVRSIS----KPVNETS-VCLGGGVWRIKH--HPFIPGLVLAAC-MHNGFAVVKVGGEKAE 276 (331)
Q Consensus 205 ~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~-~~~~~~v~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 276 (331)
+ ....|+.+-++.-|..+|.+... +.+...- ......+..|+. .+++.+++++++ .++.+.+|+.... .+
T Consensus 189 d-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~-~~ 266 (355)
T 3amr_A 189 D-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK-NK 266 (355)
T ss_dssp T-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT-CC
T ss_pred C-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC-Cc
Confidence 8 77889999998776666654321 1121100 111246777877 555555777777 5667777777532 45
Q ss_pred eeEEee
Q 020107 277 VLETYA 282 (331)
Q Consensus 277 ~~~~~~ 282 (331)
.+..|.
T Consensus 267 ~vg~f~ 272 (355)
T 3amr_A 267 YVADFR 272 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.02 E-value=0.0019 Score=57.38 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=49.5
Q ss_pred EEEcCCCCeEEEEecC----------------CeEEEEEccccceeeeeeeeccc--------ceeEEEeeC-CCCC---
Q 020107 111 LEWNPSATSITVGLSD----------------GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFD-VHQP--- 162 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~--- 162 (331)
+++.+....++.+..+ +.|..+|.++++..-......|. .++. +... . ++
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~ 323 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKAR 323 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eecccc-CCcEE
Confidence 4566777788887765 38999999998763323332232 1121 2221 2 34
Q ss_pred cEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 163 HMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
..++.++.+|.+.++|.++++.+....
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 567778999999999999998765443
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.00 E-value=0.0003 Score=63.57 Aligned_cols=187 Identities=12% Similarity=0.032 Sum_probs=102.3
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEc-CCcc-----E-E
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQAD-ADGG-----L-L 95 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~-~dg~-----i-i 95 (331)
+.++++|++ .+..+.+||..+.. ...+...+... -.++...++ +++++.|+ .++. + +
T Consensus 254 g~lyv~GG~---------~~~~v~~yd~~t~~--W~~~~~~~~~R~~~s~~~~~d----g~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 254 GQIVVTGGN---------DAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMSD----GRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp SCEEEECSS---------STTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECTT----SCEEEECCCCCSSSCCCCEEE
T ss_pred CCEEEeCCC---------CCCceEEecCcCCc--eeECCCCCccccccceEEecC----CeEEEEeCcccCCcccccceE
Confidence 378888874 35589999998764 33332222221 234556677 78888888 4432 2 6
Q ss_pred EecCCCcccC------ccEE----EEEEcCCCCeEEEEecCC---------eEEEEEccccceeeeeeeecc-------c
Q 020107 96 RDITGEKISS------SMCL----CLEWNPSATSITVGLSDG---------SVSIVSVVESQLEVLQQWKAH-------E 149 (331)
Q Consensus 96 w~~~~~~~~~------~~v~----~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~-------~ 149 (331)
||..+..... .+.. ...+..++...+.|+.+| .+..||..+............ .
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 7766543211 0000 011223455556665544 467888877653211111100 1
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCC-----------eEEEEEccCCCceeee--ecccCCCcceEEEEEecCCCCEEEEEec
Q 020107 150 FELWATSFDVHQPHMVYTGSDDC-----------KFSGWDIRESPFKLAF--QNSKIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
..-.++.+...++++++.|+.++ .+.+||..+....... .. + ....-.++...| ++++++.|+.
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p-~~R~~~~~~~l~-~g~i~v~GG~ 475 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-Y-FARTFHTSVVLP-DGSTFITGGQ 475 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-S-SCCBSCEEEECT-TSCEEEECCB
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-C-CCcccCCeEECC-CCCEEEECCc
Confidence 12234444434678888887543 6778888776533222 11 1 111223445567 8899999986
Q ss_pred C-----------CeEEEEEecCC
Q 020107 217 D-----------EYLRVWDVRSI 228 (331)
Q Consensus 217 d-----------~~i~iwd~~~~ 228 (331)
+ ..+.+||..+.
T Consensus 476 ~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 476 RRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ccCcCcCCCCcccceEEEcCCCC
Confidence 5 46899998763
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.99 E-value=5e-05 Score=68.92 Aligned_cols=233 Identities=8% Similarity=-0.050 Sum_probs=122.8
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEc-CCccE-EEecCC----Ccc---c---CccEEE
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQAD-ADGGL-LRDITG----EKI---S---SSMCLC 110 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~dg~i-iw~~~~----~~~---~---~~~v~~ 110 (331)
.+.|+..++.... +..+.. ....+..|+|.+. ...|+.+. ..+.| .+++.+ ... . ......
T Consensus 385 ~~~I~~id~~~~~--~~~~~~-~~~~p~gla~d~~----~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSCC--EECCSC-CCTTCCCCEEETT----TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCCc--ceeeec-cCcceEEEccccc----cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 5577788877653 222212 2345678999987 55665554 44555 555543 111 1 122456
Q ss_pred EEEcCCCCeEEEE-ecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCCceeee
Q 020107 111 LEWNPSATSITVG-LSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESPFKLAF 188 (331)
Q Consensus 111 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 188 (331)
|++.+.+..|+.+ ...+.|.++++...... ..+.........++++|..+.++++-... +.|..+++.... ...+
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l 534 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 534 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence 7887655555554 45788999998754321 11222223467888988555555544333 778888776433 2222
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee--ecCCceEEEEECCCCCCeEEEEEecCcEE
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV--CLGGGVWRIKHHPFIPGLVLAACMHNGFA 266 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.. ..-...+.|+++|..+.++++-...+.|..+|+..... ..+.. ........|++..+ .++++....+.|.
T Consensus 535 ~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~ 608 (699)
T 1n7d_A 535 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF 608 (699)
T ss_dssp SC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEE
T ss_pred Ee--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEE
Confidence 11 02345678999984455666666778899999875321 22111 11122345555443 5555554455544
Q ss_pred EEEEcCcccceeEEeecCCcceeeeee
Q 020107 267 VVKVGGEKAEVLETYAKHGSLAYGADW 293 (331)
Q Consensus 267 ~~~~~~~~~~~~~~~~~h~~~v~~~~~ 293 (331)
.++ ...++.+..+.......+++++
T Consensus 609 ~~d--~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 609 SAN--RLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEE--TTTEEEEECCCTTCSSCCCCCB
T ss_pred EEE--ccCCCceEEeecCCCCCcEEEE
Confidence 443 3224544444332223344433
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.97 E-value=0.0086 Score=53.60 Aligned_cols=211 Identities=6% Similarity=-0.067 Sum_probs=124.4
Q ss_pred CCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEE-EEcCCccE-EEecCCCcc------cCccEEEEEEc
Q 020107 43 NGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLA-QADADGGL-LRDITGEKI------SSSMCLCLEWN 114 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~dg~i-iw~~~~~~~------~~~~v~~~~~~ 114 (331)
.+.|+..+++... ....+....-..+.+|+|.+. +..|. +-..++.| .+++..... .......+++.
T Consensus 14 ~~~I~~i~l~~~~-~~~~~~~~~~~~~~~l~~d~~----~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 14 RADIRRISLETNN-NNVAIPLTGVKEASALDFDVT----DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD 88 (628)
T ss_dssp TTEEEEEESSCTT-CEEECCCCSCSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred CCcEEEEECCCCC-cceEEEcCCCCceEEEEEECC----CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence 7889999998754 112221122346889999997 44554 44555666 555544321 11245678888
Q ss_pred CCCCeEEEEe-cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEE-cCCCeEEEEEccCCCceeeeeccc
Q 020107 115 PSATSITVGL-SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSK 192 (331)
Q Consensus 115 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~ 192 (331)
+.+..|+.+. ..+.|.+.+++......+ +...-.....+++.|..+.++.+- +..+.|...++......... .
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~-- 163 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-P-- 163 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-C--
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-C--
Confidence 7666665554 478899999875432112 212334568999998555555554 23578888888755433222 2
Q ss_pred CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEE
Q 020107 193 IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVK 269 (331)
Q Consensus 193 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (331)
.-.....|++++..+.+.++-...+.|..+|+..... .. +.........+++..+ .++++-...+.|..++
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v-~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EV-IADDLPHPFGLTQYQD--YIYWTDWSRRSIERAN 234 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE-EEECCSCEEEEEEETT--EEEEEETTTTEEEEEE
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EE-eeccCCCceEEEEECC--EEEEecCCCCEEEEEE
Confidence 3456789999993344444445678899999976433 22 2333445567777653 4444443445533333
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0031 Score=54.28 Aligned_cols=161 Identities=8% Similarity=0.020 Sum_probs=93.0
Q ss_pred cEEEEEEcC-CCCeEEEEec-CCeEEEEEccccceeeeeeeec-ccceeEEEee-------CCCCCcEEEEEcCCC----
Q 020107 107 MCLCLEWNP-SATSITVGLS-DGSVSIVSVVESQLEVLQQWKA-HEFELWATSF-------DVHQPHMVYTGSDDC---- 172 (331)
Q Consensus 107 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~l~~~~~dg---- 172 (331)
....|+|+| +...|+++.. .+.|++.|++++....+..... .......++| ++ ++..|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 356899998 3555555554 5779999998766533322211 1235789999 87 666444444332
Q ss_pred ---eEEEEEccC-CCce-----eeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEec-------CCCC--C---
Q 020107 173 ---KFSGWDIRE-SPFK-----LAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVR-------SISK--P--- 231 (331)
Q Consensus 173 ---~i~i~d~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~-------~~~~--~--- 231 (331)
.|.+++... +... ..+.. -.....++++|.++.++++-..++.|..+|+. +... +
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cCceEEEEecCCCCceeecccceeecc----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666333 1221 12221 12345678899556666677788899999998 4322 0
Q ss_pred -----ceeee-eecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 232 -----VNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 232 -----~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
...+. .+.......|+|+|++..++++-.....|+.++...
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 11211 222345689999999733455555556655555543
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.94 E-value=0.0066 Score=54.35 Aligned_cols=190 Identities=11% Similarity=-0.064 Sum_probs=115.9
Q ss_pred eEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcce
Q 020107 119 SITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGV 198 (331)
Q Consensus 119 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 198 (331)
+|+.+ ....|+..+++.........+. .-..+..++|++.++.++++-..++.|..+++........+.. .....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~---g~~~P 82 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF---GLDYP 82 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC---CCCCc
Confidence 44444 5578999999865432222222 2345779999986666667767789999999876543333332 22456
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCccccee
Q 020107 199 CCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVL 278 (331)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
..|++.+..+++.++-...+.|.+.++.... ...+....-.....|++.|.. +.++.+.....-+|+..... +...
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~d-G~~~ 158 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMD-GSER 158 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCSC
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCC-CCce
Confidence 7888887456666666677899999987532 222122334567899999965 55555542212235444333 2323
Q ss_pred EEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 279 ETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 279 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
..+...-....++++.+++. ++.++=. ..+.|...+++.
T Consensus 159 ~~l~~~~~~P~GlalD~~~~--------~LY~aD~-~~~~I~~~d~dG 197 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKR--------RLYWTDL-DTNLIESSNMLG 197 (628)
T ss_dssp EEEECSCSSEEEEEEETTTT--------EEEEEET-TTTEEEEEETTS
T ss_pred EEEECCCCCcceEEEccccC--------EEEEEEC-CCCEEEEEcCCC
Confidence 33333345677899998763 4445544 678888888764
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.92 E-value=0.002 Score=52.00 Aligned_cols=162 Identities=7% Similarity=-0.018 Sum_probs=102.4
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccC------CCcceEEEEE---ecCCCCEEEEEec--
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKI------HKMGVCCIAS---IPSDSNTLLTGSY-- 216 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~~l~~~~~-- 216 (331)
...-..+++|++.++.++++.-..+.|..||...+..... .. +. ....+..|.| .| ++.++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~-~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~ 87 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI-DGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAK 87 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC-TTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec-CCccccCCCcceeeEEEEeccCC-CCcEEEEEcccc
Confidence 3344567899874555555555899999999975543322 22 11 1224689999 68 6777775432
Q ss_pred -----------CCeEEEEEec---CCCCCceeeeee-----------cCCceEEEEECCCCCCeEEEEEec-CcEEEEEE
Q 020107 217 -----------DEYLRVWDVR---SISKPVNETSVC-----------LGGGVWRIKHHPFIPGLVLAACMH-NGFAVVKV 270 (331)
Q Consensus 217 -----------d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 270 (331)
+..|..||+. +++.....-+.. -......++..+++ +.+++.+.. +. ||++
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~--I~rV 164 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPA--IARV 164 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCE--EEEE
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCe--EEEE
Confidence 6789999998 653332221111 11247899999997 566655555 55 7888
Q ss_pred cCcccceeEEee------cCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 271 GGEKAEVLETYA------KHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 271 ~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
... ++.+..+. ......+++++.|++ ++|+... ..|.|..+|+.+
T Consensus 165 ~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg---------~~Liv~~-~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SAD-GKTVSTFAWESGNGGQRPGYSGITFDPHS---------NKLIAFG-GPRALTAFDVSK 215 (334)
T ss_dssp CTT-SCCEEEEEECCCCSSSCCSCSEEEEETTT---------TEEEEES-SSSSEEEEECSS
T ss_pred eCC-CCEEeeeeecCCCcccccCcceEEEeCCC---------CEEEEEc-CCCeEEEEcCCC
Confidence 776 33333321 112236799999998 5777777 599999999763
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.92 E-value=0.0034 Score=50.65 Aligned_cols=153 Identities=14% Similarity=0.039 Sum_probs=100.4
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc-----c--------CccEEEEEE---cCCCCeEEEEe-------
Q 020107 69 IFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI-----S--------SSMCLCLEW---NPSATSITVGL------- 124 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~--------~~~v~~~~~---~~~~~~l~~~~------- 124 (331)
-.+++|.+.. +.++++.-..+.| .|+...... . ...+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~---g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 15 PEDTIYDRTR---QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CSCEEEETTT---TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CcCccCcCCC---CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 4577888762 4444555478888 777653321 0 124589999 68877766544
Q ss_pred ------cCCeEEEEEcc---ccceeeeeeeecc-----------cceeEEEeeCCCCCcEEEEEcCC-CeEEEEEccCCC
Q 020107 125 ------SDGSVSIVSVV---ESQLEVLQQWKAH-----------EFELWATSFDVHQPHMVYTGSDD-CKFSGWDIRESP 183 (331)
Q Consensus 125 ------~dg~i~i~d~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 183 (331)
.+..|..||+. +++......+... ......++..+ +++..++++.. +.|...+.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCE
Confidence 26789999998 6654333333211 13478999998 78888888888 888777776442
Q ss_pred ceeeeec-c--cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 184 FKLAFQN-S--KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 184 ~~~~~~~-~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
...+.. . .......+.|+++| +++.|++...++.|..+|++.
T Consensus 171 -~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 -VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred -EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 332221 1 11233477999999 888877776699999999985
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.006 Score=49.72 Aligned_cols=191 Identities=9% Similarity=0.106 Sum_probs=112.5
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCC---CCc---EEEEEc-C--CCeEEEEEcc--CCCcee
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH---QPH---MVYTGS-D--DCKFSGWDIR--ESPFKL 186 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~-~--dg~i~i~d~~--~~~~~~ 186 (331)
..++.....+-+.+||+ +++. +..+.. ..++.+..-|. .+. ++++.. . +++|++|++. ++. +.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~--l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKM--LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCE--EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred cEEEEEcCCCCEEEEcC-CCcE--EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 45565666789999999 5543 444442 34566655541 111 233333 3 5899999774 332 33
Q ss_pred eeecc--c--CCCcceEEEEE--ecCCCC-EEEEEecCCeEEEEEecCCC------CCceeeeeecCCceEEEEECCCCC
Q 020107 187 AFQNS--K--IHKMGVCCIAS--IPSDSN-TLLTGSYDEYLRVWDVRSIS------KPVNETSVCLGGGVWRIKHHPFIP 253 (331)
Q Consensus 187 ~~~~~--~--~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~ 253 (331)
.+... + .-...+..+++ +|..+. ++++...+|.+..|++.... +.+.+ ....+.+-.+...+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~--f~lgsq~EgcvvDd~~- 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA--FKMNSQTEGMAADDEY- 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE--EECSSCEEEEEEETTT-
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE--ecCCCCcceEEEcCCC-
Confidence 33110 0 01155666777 663443 68888889999999995321 22333 4556788888988876
Q ss_pred CeEEEEEecCcEEEEEEcCc-----ccceeEEee-cC-CcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCC
Q 020107 254 GLVLAACMHNGFAVVKVGGE-----KAEVLETYA-KH-GSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPE 325 (331)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~ 325 (331)
+.++++-.+.+ +|.+... ..+.+..+. ++ ...+.+++.-+... ..+.+|+|+- .+.++.+||.+
T Consensus 192 g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~-----g~gyLivSsQ-G~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD-----GKGYLMASSQ-GNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG-----GCEEEEEEEG-GGTEEEEEESS
T ss_pred CeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC-----CCEEEEEEcC-CCCEEEEEECC
Confidence 77777766666 7777632 134554443 22 23678888753320 0113555654 67899999986
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.89 E-value=0.0021 Score=57.09 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=99.2
Q ss_pred EEEcCCCCeEEEEec--------------------C----CeEEEEEccccceeeeeeeeccc--------ceeEEEeeC
Q 020107 111 LEWNPSATSITVGLS--------------------D----GSVSIVSVVESQLEVLQQWKAHE--------FELWATSFD 158 (331)
Q Consensus 111 ~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~~~~~~~~--------~~v~~~~~~ 158 (331)
++++|....++++.. | +.|..+|.++++..-......|. .++. +...
T Consensus 251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~ 329 (582)
T 1flg_A 251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYK 329 (582)
T ss_dssp CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEE
T ss_pred ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eeee
Confidence 456677777777663 2 68999999998753332222232 1121 1211
Q ss_pred CCCC---cEEEEEcCCCeEEEEEccCCCceeeeecccC----------CCcc----------------------------
Q 020107 159 VHQP---HMVYTGSDDCKFSGWDIRESPFKLAFQNSKI----------HKMG---------------------------- 197 (331)
Q Consensus 159 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~---------------------------- 197 (331)
..++ ..++.++.+|.++++|.++++.+..+..... ...+
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 409 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL 409 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence 0134 4788899999999999999886554433100 0000
Q ss_pred ----eEEEEEecCCCCEEEEEe---------------------------------cCCeEEEEEecCCCCCceeeeeecC
Q 020107 198 ----VCCIASIPSDSNTLLTGS---------------------------------YDEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 198 ----v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
-..++++| +..++++.. .+|.|.-||+.+++. +-+ ....
T Consensus 410 Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~-~W~--~~~~ 485 (582)
T 1flg_A 410 GGKNWNPMAYSQ-DTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV-VWE--HKEH 485 (582)
T ss_dssp CSSCSSCCEECT-TTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCE-EEE--EEES
T ss_pred cccCCCCceECC-CCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCE-EEE--ecCC
Confidence 01345666 333444432 257889999988643 333 2222
Q ss_pred CceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcce-eeeeecCCCC
Q 020107 241 GGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLA-YGADWQRGRS 298 (331)
Q Consensus 241 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~ 298 (331)
.++..-.....+ ++++.++.++.++.++... ++.+.+++...... .-+.+..++.
T Consensus 486 ~~~~~g~~~tag-glvf~g~~dg~l~A~D~~t--G~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 486 LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SCCCSCCEEETT-TEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCcccceEeCC-CEEEEECCCCcEEEEECCC--CCEEEEecCCCCcccCceEEEECCE
Confidence 222211111122 6777777778777776654 78888777533221 2256666764
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.84 E-value=0.012 Score=52.71 Aligned_cols=201 Identities=10% Similarity=-0.103 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCeEEEEec-CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 108 CLCLEWNPSATSITVGLS-DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 108 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
...++|++.+..|+.+.. .+.|..++++.... ....+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~ 120 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 120 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE
Confidence 445666665555554443 56666666654321 1112222224577888887566677777788999999998654332
Q ss_pred eeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 187 AFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
.+.. .-.....|++.|..+.++.+-- ..+.|...++... ....+....-.....|++.++...++++-...+.|
T Consensus 121 l~~~---~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~--~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 121 LFWQ---ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp EECS---SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred EEeC---CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC--ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 2222 3445788999994454444432 2456766666542 22222223345678999999764555554455564
Q ss_pred EEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 266 AVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
..+++.....+.+ ..+......++++..+ .++++-. ..+.|...|..++
T Consensus 196 ~~~~~dG~~~~~~--~~~~~~~P~gi~~~~~----------~ly~td~-~~~~V~~~d~~tg 244 (619)
T 3s94_A 196 HKSNLDGTNRQAV--VKGSLPHPFALTLFED----------ILYWTDW-STHSILACNKYTG 244 (619)
T ss_dssp EEESSSCCEEC-----------CCCEEESSS----------EEEEECT-TTCSEEEEESSSC
T ss_pred EEecCCCCccEEE--EeCCCCCceEEEEeCC----------EEEEecC-CCCEEEEEECCCC
Confidence 4444433211111 1111222346666554 3555544 6777877777655
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.83 E-value=0.011 Score=50.28 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=88.0
Q ss_pred EeEEEEcCC-CCCCCCeEEEEcCCccE-EEecCCCcc-----cCccEEEEEEcCCCCeEEEEecCC-----eEEEEEccc
Q 020107 69 IFDIKWSPV-GGNAGPFLAQADADGGL-LRDITGEKI-----SSSMCLCLEWNPSATSITVGLSDG-----SVSIVSVVE 136 (331)
Q Consensus 69 v~~~~~~~~-~~~~~~~l~~~~~dg~i-iw~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~ 136 (331)
...|+|.|+ + ...|..+...+.+ .++..+... .......++++++++ |+++...+ .+...+...
T Consensus 141 P~gvavd~~s~---~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSN---YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTT---TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccC---CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 568888883 1 3356555554555 566644433 234578999999999 55554422 233333332
Q ss_pred cceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEE-EEEe
Q 020107 137 SQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTL-LTGS 215 (331)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~ 215 (331)
.......+. .......++++|.++.++++-..++.|+.+|..++.....+.... .......++++| +++.| ++-.
T Consensus 217 -~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dp-dG~~LYvad~ 292 (433)
T 4hw6_A 217 -GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHP-TGDWAYIIYN 292 (433)
T ss_dssp -TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECT-TSSEEEEEET
T ss_pred -Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeC-CCCEEEEEeC
Confidence 221111121 223456788888566666666678899999998766422222211 122335799999 88744 4445
Q ss_pred cCCeEEEEEecC
Q 020107 216 YDEYLRVWDVRS 227 (331)
Q Consensus 216 ~d~~i~iwd~~~ 227 (331)
..+.|+.+++..
T Consensus 293 ~~~~I~~~~~d~ 304 (433)
T 4hw6_A 293 GKHCIYRVDYNR 304 (433)
T ss_dssp TTTEEEEEEBCT
T ss_pred CCCEEEEEeCCC
Confidence 678999988763
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.80 E-value=0.0095 Score=48.66 Aligned_cols=224 Identities=6% Similarity=-0.100 Sum_probs=113.9
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCC--------Cc--ccCccEEEEEEcCCCCeEEEEecCCeEEEEEcc
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITG--------EK--ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVV 135 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~--------~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 135 (331)
...+.+|.|.+. +..++++ ..|.+++.... .. .....+.++.|.+ + .+++++..|.|.. ..+
T Consensus 35 ~~~~~~v~~~~~----~~~~~~G-~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDR----HHGWLVG-VNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTD 106 (327)
T ss_dssp SSCEEEEEESSS----SCEEEEE-TTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESS
T ss_pred CCcEEEEEECCC----CcEEEEc-CCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECC
Confidence 456899999876 6667754 56666332222 11 1234688899976 3 4444556675543 222
Q ss_pred cc-ceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 136 ES-QLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 136 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
.+ .+..+.....+...+..+.+.+ ++..++.+. ++.|.. ....++.-..... .....+..+.+.| ++.+++.+
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~--~~~~~~~~~~~~~-~~~~~~~g 180 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKNWQALVQ--EAIGVMRNLNRSP-SGEYVAVS 180 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSSEEEEEC--SCCCCEEEEEECT-TSCEEEEE
T ss_pred CCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCCCEEeec--CCCcceEEEEEcC-CCcEEEEE
Confidence 22 2322221111233466777664 455555554 554422 1222332222221 2456789999998 77777766
Q ss_pred ecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEee-c---CCcceee
Q 020107 215 SYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYA-K---HGSLAYG 290 (331)
Q Consensus 215 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---h~~~v~~ 290 (331)
...+..+-.|-. ..............+..+.+.+++ .+++.+.++.+ +.-....++....+. . +...+.+
T Consensus 181 ~~G~~~~S~d~g--G~tW~~~~~~~~~~~~~~~~~~~g--~~~~~~~~G~~--~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 181 SRGSFYSTWEPG--QTAWEPHNRTTSRRLHNMGFTPDG--RLWMIVNGGKI--AFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp TTSSEEEEECTT--CSSCEEEECCSSSCEEEEEECTTS--CEEEEETTTEE--EEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred CCCcEEEEeCCC--CCceeECCCCCCCccceeEECCCC--CEEEEeCCceE--EEecCCCCCeeEeccCCcccCCcceEE
Confidence 544433334321 122222223455678899998884 45555555542 222111122222221 1 2235788
Q ss_pred eeecCCCCcccccccCcEEEEeecCCCeEE
Q 020107 291 ADWQRGRSSLEGKRKNSLVATCSFYDRLLR 320 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~ 320 (331)
+.+.+++ .+++.+ .++.|.
T Consensus 255 v~~~~~~---------~~~~~g--~~g~i~ 273 (327)
T 2xbg_A 255 LAYRTPN---------EVWLAG--GAGALL 273 (327)
T ss_dssp EEESSSS---------CEEEEE--STTCEE
T ss_pred EEecCCC---------EEEEEe--CCCeEE
Confidence 8888765 455554 477663
No 299
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.029 Score=53.84 Aligned_cols=288 Identities=12% Similarity=0.047 Sum_probs=147.0
Q ss_pred eeeecCcceeEeeecCCC---CCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCC
Q 020107 5 HCELDGNADAVEFCPQDS---YHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNA 81 (331)
Q Consensus 5 ~~~~~~~~~~v~~~~~~~---~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 81 (331)
+..++..+.|++..|..+ ..+++|+|.+ .|++++|++++..+ .+....-+......++.+..-. .
T Consensus 549 ~~~l~~evscl~i~~~~~~~~~s~~~aVg~~---------~d~tv~I~sL~~l~-~~~~~~L~~~~~p~si~l~~~~-~- 616 (1158)
T 3ei3_A 549 HTEMEHEVACLDITPLGDSNGLSPLCAIGLW---------TDISARILKLPSFE-LLHKEMLGGEIIPRSILMTTFE-S- 616 (1158)
T ss_dssp EEECSSCEEEEECCCCSSSTTCCSEEEEEET---------TTTEEEEEETTTCC-EEEEEECCSSCCEEEEEEEEET-T-
T ss_pred ccCCCCceEEEEeecCCCCcccccEEEEEEC---------CCCEEEEEECCCCC-eEEEEECCCCCCCcEEEEEEeC-C-
Confidence 345677888998877542 2369999983 39999999998654 2221111111223333333211 0
Q ss_pred CCeEEEEcCCccE---EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccc
Q 020107 82 GPFLAQADADGGL---LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEF 150 (331)
Q Consensus 82 ~~~l~~~~~dg~i---iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 150 (331)
..+|..|-.||.+ .++..++.. ...++.-..+...+..-+.+..+....+|.-+ +++ ....+. ..
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l-~~s~l~--~~ 692 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKL-VFSNVN--LK 692 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSE-EEEEBS--SS
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cce-EEeccC--hH
Confidence 4588999999998 444433332 12334333444444433333334444444433 332 122221 11
Q ss_pred ee-EEEeeCCCC-CcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----------
Q 020107 151 EL-WATSFDVHQ-PHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD----------- 217 (331)
Q Consensus 151 ~v-~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------- 217 (331)
.+ ....|+... ++-++..+ ++.++|..+........... + -...++.++++| ..+.++.+..+
T Consensus 693 ~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~i-p-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~ 768 (1158)
T 3ei3_A 693 EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTV-P-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTT 768 (1158)
T ss_dssp CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEE-E-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEE
T ss_pred HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEE-e-CCCCceEEEEcC-CCCEEEEEEEeccccccccccc
Confidence 22 233454311 34455444 45699988865433222221 1 256788899998 55554443311
Q ss_pred --------------------------------------CeEEEEEecCCCCCceeeeeecCCceEEEE---ECCCCCCeE
Q 020107 218 --------------------------------------EYLRVWDVRSISKPVNETSVCLGGGVWRIK---HHPFIPGLV 256 (331)
Q Consensus 218 --------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~ 256 (331)
..|++.|..+. +.+..+.......+.+++ |..+...++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 769 ALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp ESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred hhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 23556665554 222222223333444544 443333555
Q ss_pred EEEE----------ecCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 257 LAAC----------MHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 257 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
+++. ..+.+.++++.+..-+.+... ...++|++++--. + +|+.+- ...|++|++..
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~~-g----------~Lla~i--g~~l~vy~l~~ 913 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEFN-G----------KLLASI--NSTVRLYEWTT 913 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEET-T----------EEEEEE--TTEEEEEEECT
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeeeC-C----------EEEEEc--CCEEEEEECCC
Confidence 5554 234578888874322333222 3467888876443 3 444443 57999999876
Q ss_pred c
Q 020107 327 D 327 (331)
Q Consensus 327 ~ 327 (331)
.
T Consensus 914 ~ 914 (1158)
T 3ei3_A 914 E 914 (1158)
T ss_dssp T
T ss_pred C
Confidence 4
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.60 E-value=0.018 Score=46.23 Aligned_cols=189 Identities=10% Similarity=0.107 Sum_probs=123.1
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE 101 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~ 101 (331)
|..+.+|.-. ...+++||++... +++.. . ....|.--+|-.. +.|+-.+......|++...
T Consensus 76 P~~~ViALra-----------g~~LQiFnletK~-klks~-~-~~e~VvfWkWis~-----~~L~lVT~taVyHWs~~~~ 136 (365)
T 2xzh_A 76 PASKVIALKA-----------GKTLQIFNIEMKS-KMKAH-T-MTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGE 136 (365)
T ss_dssp SSSSEEEEEE-----------TTEEEEEETTTTE-EEEEE-E-CSSCEEEEEECSS-----SEEEEEESSEEEEEESSTT
T ss_pred CCccEEEEec-----------CCeEEEechHHhh-hhcce-e-cCCccEEEEecCC-----CeEEEEcCCcEEEEcccCC
Confidence 3337888876 7899999999876 33333 1 2457777788765 3677776666668988753
Q ss_pred cc-----------cCccEEEEEEcCCCCeEEEEec-------CCeEEEEEccccceeeeeeeecccceeEEEeeCC--CC
Q 020107 102 KI-----------SSSMCLCLEWNPSATSITVGLS-------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDV--HQ 161 (331)
Q Consensus 102 ~~-----------~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 161 (331)
.. ....|.....+++.+.++..+- .|.+.+|..+.+. .+.+.+|......+...- ..
T Consensus 137 s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 137 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEE 213 (365)
T ss_dssp CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSC
T ss_pred CCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc---cceeeeeeeeeEEEecCCCCCC
Confidence 22 2566777788888888655432 4788999988643 456778876665555432 12
Q ss_pred CcEEEEEcC---CCeEEEEEccCC-Cceeee--------ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 162 PHMVYTGSD---DCKFSGWDIRES-PFKLAF--------QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 162 ~~~l~~~~~---dg~i~i~d~~~~-~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
..+++.+.. .+.++|-++... .....+ .......+-..++..++ .-..++.-+.-|.|++||+.++
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTg- 291 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG- 291 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC-
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccC-
Confidence 234444433 268999998543 111111 11122355677888888 7778999999999999999996
Q ss_pred CCcee
Q 020107 230 KPVNE 234 (331)
Q Consensus 230 ~~~~~ 234 (331)
.++..
T Consensus 292 t~i~~ 296 (365)
T 2xzh_A 292 TCIYM 296 (365)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 44443
No 301
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.47 E-value=0.028 Score=45.12 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=94.5
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcCCcc-----E-EEe
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADADGG-----L-LRD 97 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~dg~-----i-iw~ 97 (331)
.+++.|++.... .....+.+||+.+.. ...+....... -.++. ..+ +.+++.|+.++. + +++
T Consensus 16 ~i~~~GG~~~~~----~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~-~~~----~~l~v~GG~~~~~~~~~~~~~d 84 (301)
T 2vpj_A 16 VLLVVGGFGSQQ----SPIDVVEKYDPKTQE--WSFLPSITRKRRYVASV-SLH----DRIYVIGGYDGRSRLSSVECLD 84 (301)
T ss_dssp EEEEECCEETTT----EECCCEEEEETTTTE--EEECCCCSSCCBSCEEE-EET----TEEEEECCBCSSCBCCCEEEEE
T ss_pred EEEEEeCccCCC----cceeEEEEEcCCCCe--EEeCCCCChhhccccEE-EEC----CEEEEEcCCCCCccCceEEEEE
Confidence 567777632111 124578889987764 22221111111 11111 123 557777776543 2 666
Q ss_pred cCCCc---cc--------CccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 98 ITGEK---IS--------SSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 98 ~~~~~---~~--------~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
+.+.. -. ......+.+ +++.++.|+.+ ..+.+||+.+.++..+..+.........+.+ +
T Consensus 85 ~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~ 159 (301)
T 2vpj_A 85 YTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---S 159 (301)
T ss_dssp TTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---T
T ss_pred CCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---C
Confidence 66554 21 111112222 55666666643 3688999988877655444322222222222 4
Q ss_pred CcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107 162 PHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI 228 (331)
Q Consensus 162 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 228 (331)
+.+++.|+.+ ..+.+||+.+.+-...-.. +.....-..+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-CcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 5777777754 4688999887653222111 111222222322 56788888764 46888998763
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=0.046 Score=47.06 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=91.4
Q ss_pred EeEEEEcCCCCCCCCeEEEEcCC-ccE-EEecCCCcc---------cCccEEEEEE-------cCCCCeEEEEecCC---
Q 020107 69 IFDIKWSPVGGNAGPFLAQADAD-GGL-LRDITGEKI---------SSSMCLCLEW-------NPSATSITVGLSDG--- 127 (331)
Q Consensus 69 v~~~~~~~~~~~~~~~l~~~~~d-g~i-iw~~~~~~~---------~~~~v~~~~~-------~~~~~~l~~~~~dg--- 127 (331)
...|+|.|.+ ...|.++... +.+ +.++..... .......++| +++++.|+++...+
T Consensus 141 p~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 141 NGRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp EEEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 4678888831 3345555443 333 444444332 1235789999 99999777776643
Q ss_pred ----eEEEEEccc-cceee---eeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEcc-------CCCc--------
Q 020107 128 ----SVSIVSVVE-SQLEV---LQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIR-------ESPF-------- 184 (331)
Q Consensus 128 ----~i~i~d~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~-------- 184 (331)
.|.+++... +.+.. ...+.. -.....++++|.++.++++-..++.|..+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665443 23210 012221 12345778898667777788888999999998 5543
Q ss_pred ---e-eeeecccCCCcceEEEEEecCCCCEE-EEEecCCeEEEEEecC
Q 020107 185 ---K-LAFQNSKIHKMGVCCIASIPSDSNTL-LTGSYDEYLRVWDVRS 227 (331)
Q Consensus 185 ---~-~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 227 (331)
. ..+.. +.....+.|+|+| +++.| ++-...+.|+.+|...
T Consensus 297 ~g~~~~l~~~--~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 297 PNTFKQLFTI--ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TTTEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred ccccceeEec--CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCC
Confidence 1 11222 1234568999999 88854 4445678899977754
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.40 E-value=0.045 Score=45.89 Aligned_cols=223 Identities=10% Similarity=0.102 Sum_probs=137.6
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI 103 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~ 103 (331)
.+.+|.-. ...++|||++... +++.. . ....|.--+|-.. +.|+-.+......|++.....
T Consensus 77 ~~iiALra-----------g~~lQiFnle~K~-klks~-~-~~e~VvfWkWis~-----~~l~lVT~taVyHWsi~~~s~ 137 (494)
T 1bpo_A 77 SKVIALKA-----------GKTLQIFNIEMKS-KMKAH-T-MTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGESQ 137 (494)
T ss_dssp SSCEEEEE-----------TTEEEEEETTTTE-EEEEE-E-CSSCCCEEEEEET-----TEEEEECSSEEEEEESSSSCC
T ss_pred CcEEEEec-----------CCeEEEEchHHhh-hhcce-e-cCCCceEEEecCC-----CeEEEEcCCeeEEecccCCCC
Confidence 36788876 8899999999875 33333 1 2356777777654 277777766666999865322
Q ss_pred -----------cCccEEEEEEcCCCCeEEEEec-------CCeEEEEEccccceeeeeeeecccceeEEEeeCCC--CCc
Q 020107 104 -----------SSSMCLCLEWNPSATSITVGLS-------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVH--QPH 163 (331)
Q Consensus 104 -----------~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 163 (331)
....|.....+++.++++..+- .|.+.+|..+.+. ...+.+|......+...-. ...
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEE
T ss_pred chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCce
Confidence 2566777788888888654432 4788999988653 4567788776666655421 123
Q ss_pred EEEEEcC---CCeEEEEEccCC-Cceeee--------ecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC
Q 020107 164 MVYTGSD---DCKFSGWDIRES-PFKLAF--------QNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP 231 (331)
Q Consensus 164 ~l~~~~~---dg~i~i~d~~~~-~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 231 (331)
+++.+.. .+.++|.++... .....+ -......+-..++..++ .-..++.-+.-|.|++||+.++ .+
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTg-t~ 292 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG-TC 292 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC-CE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccc-ee
Confidence 4554444 379999999653 111111 11122355677899998 7788889999999999999996 44
Q ss_pred ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
+.. ..-....|...+.+... +-+++....+.+..+.+.+
T Consensus 293 i~~-nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 293 IYM-NRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEE-EECCSSCEEEEEEETTT-TEEEEEETTCEEEEEEECT
T ss_pred eee-ecccCCceEEecccCCC-CcEEEEccCceEEEEEEcc
Confidence 443 13333444444444433 2233333455544444443
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.40 E-value=0.02 Score=47.88 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=85.9
Q ss_pred CCcEEEEeccCcccceEEeEeee---cCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC----c-------------
Q 020107 43 NGSISLFNVNAEEKNLELLYRMD---TAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE----K------------- 102 (331)
Q Consensus 43 ~g~i~vw~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~----~------------- 102 (331)
++.||.-++.... ..+.+...+ -..|..+..+|+ |++||..+..+..+-.+... .
T Consensus 40 ~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSps----G~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTS----GDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTT----SSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCC----CCEEEEecCCeEEEEEecCccccCcccccccccceeEE
Confidence 7889988887543 355443322 236888999999 99999998776553333210 0
Q ss_pred -c------cCccEEEEEEcCC---CCeEEEEecCCeEEEEEccccceeeeeeee---------cccceeEEEeeCCCCCc
Q 020107 103 -I------SSSMCLCLEWNPS---ATSITVGLSDGSVSIVSVVESQLEVLQQWK---------AHEFELWATSFDVHQPH 163 (331)
Q Consensus 103 -~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~ 163 (331)
. ...+|..+.|+|- +..|++-..|+.|++||+......+. .++ .....|.+++|.+ ++-
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~l 192 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGL 192 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSS
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCc
Confidence 0 1467999999995 45799999999999999986322222 221 1225688999997 666
Q ss_pred EEEE--EcCCCeEEEE
Q 020107 164 MVYT--GSDDCKFSGW 177 (331)
Q Consensus 164 ~l~~--~~~dg~i~i~ 177 (331)
.|.. .++.|.|+-.
T Consensus 193 TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCCCEEEE
Confidence 5655 4477887543
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.36 E-value=0.075 Score=47.52 Aligned_cols=184 Identities=9% Similarity=-0.052 Sum_probs=107.4
Q ss_pred CCeEEEEEccccceeeee-eeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEe
Q 020107 126 DGSVSIVSVVESQLEVLQ-QWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASI 204 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 204 (331)
.+.|+..++.......+. .+. .-..+.+++|.+.++.++++-...+.|+.+++........+.. .-..+..+++.
T Consensus 325 ~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD 400 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVD 400 (619)
T ss_dssp SSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEE
T ss_pred ccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---CCCCcCceEEe
Confidence 356677777654321111 111 1234678999885566666666788999999876543333322 23456788888
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEe-ec
Q 020107 205 PSDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETY-AK 283 (331)
Q Consensus 205 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 283 (331)
+..+++..+-+..+.|.+.++.... ...+....-.....|++.|.. +.+..+.....-+++..... +.....+ ..
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G~~--~~~l~~~~l~~P~~iavdp~~-G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~ 476 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNGTM--RKILISEDLEEPRAIVLDPMV-GYMYWTDWGEIPKIERAALD-GSDRVVLVNT 476 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCCSEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCSCEEEECS
T ss_pred cccCcEEEEeCCCCcEEEEeCCCCe--EEEEEECCCCCeeeEEEEcCC-CcEEEecCCCCCEEEEEccC-CCccEEEEeC
Confidence 7456666666677899999987632 222222334568899999975 55555543222235555433 2222222 23
Q ss_pred CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCC
Q 020107 284 HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPES 326 (331)
Q Consensus 284 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~ 326 (331)
.-....++++.+... ++.++=+ ..+.|...+++.
T Consensus 477 ~l~~P~GlalD~~~~--------~LY~aD~-~~~~I~~~~~dG 510 (619)
T 3s94_A 477 SLGWPNGLALDYDEG--------KIYWGDA-KTDKIEVMNTDG 510 (619)
T ss_dssp SCSCEEEEEEETTTT--------EEEEEET-TTTEEEEEESSS
T ss_pred CCCCCeeeEEcccCC--------EEEEEEC-CCCEEEEEecCC
Confidence 345667899988663 4444444 567788887754
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.32 E-value=0.029 Score=45.03 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=94.7
Q ss_pred CCCeEEEEecC-----CeEEEEEccccc---eeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccCC
Q 020107 116 SATSITVGLSD-----GSVSIVSVVESQ---LEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRES 182 (331)
Q Consensus 116 ~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 182 (331)
++..++.|+.+ ..+.+||+.+.+ +..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 55667777654 468999998877 6555444322222222222 45777777644 36888998876
Q ss_pred CceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeE
Q 020107 183 PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLV 256 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 256 (331)
+-...-.. +.....-.++.+ ++.+++.|+.+ ..+.+||+.+. ...... ......-.++....+ .++
T Consensus 139 ~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~--~i~ 210 (301)
T 2vpj_A 139 QWSMLGDM-QTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLND--HIY 210 (301)
T ss_dssp EEEEEEEC-SSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETT--EEE
T ss_pred eEEECCCC-CCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECC--EEE
Confidence 53322221 111222222222 56788888765 45888888763 111100 011111112222222 455
Q ss_pred EEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCCC
Q 020107 257 LAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPES 326 (331)
Q Consensus 257 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~~ 326 (331)
+.+|.+ +.+.++++.......+..+.........+. -++ ++++.|| .+ ..|.+||+++
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~---------~i~v~GG-~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRG---------RLYAIAG-YDGNSLLSSIECYDPII 278 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETT---------EEEEECC-BCSSSBEEEEEEEETTT
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECC---------EEEEEcC-cCCCcccccEEEEcCCC
Confidence 555442 345566665543333322221111111122 244 6778887 55 4678888877
Q ss_pred cc
Q 020107 327 DC 328 (331)
Q Consensus 327 ~~ 328 (331)
..
T Consensus 279 ~~ 280 (301)
T 2vpj_A 279 DS 280 (301)
T ss_dssp TE
T ss_pred Ce
Confidence 54
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.26 E-value=0.051 Score=43.68 Aligned_cols=179 Identities=7% Similarity=-0.062 Sum_probs=92.1
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeee--cCcEeEEEEcCCCCCCCCeEEEEcCCccE-----EEe
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMD--TAGIFDIKWSPVGGNAGPFLAQADADGGL-----LRD 97 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-----iw~ 97 (331)
.+++.|++. ....+.+||..+.. ...+.... ...-..+.+ + +.+++.|+.+... .++
T Consensus 13 ~l~~~GG~~--------~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~----~~lyv~GG~~~~~~~~~~~~d 76 (306)
T 3ii7_A 13 YRIALFGGS--------QPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFW--D----NVVYILGGSQLFPIKRMDCYN 76 (306)
T ss_dssp EEEEEECCS--------STTSEEEEETTTTE--EEECCCCSCCCBSCEEEEE--T----TEEEEECCBSSSBCCEEEEEE
T ss_pred eEEEEeCCC--------CCceEEEecCCCCC--EecCCCCCcccceeEEEEE--C----CEEEEEeCCCCCCcceEEEEe
Confidence 577777632 25678899988765 22221111 111122222 3 5577777766222 555
Q ss_pred cCCCccc--------CccEEEEEEcCCCCeEEEEecC------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCc
Q 020107 98 ITGEKIS--------SSMCLCLEWNPSATSITVGLSD------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPH 163 (331)
Q Consensus 98 ~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (331)
..+..-. ......+.+ +++.++.|+.+ ..+.+||+.+.++..+..+.........+.+ ++.
T Consensus 77 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~ 151 (306)
T 3ii7_A 77 VVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGL 151 (306)
T ss_dssp TTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTE
T ss_pred CCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCE
Confidence 5543321 111112222 56666777654 4688999998876554443322222222222 456
Q ss_pred EEEEEcC---------CCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107 164 MVYTGSD---------DCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI 228 (331)
Q Consensus 164 ~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 228 (331)
+++.|+. -..+.+||+.+.+-...-.. +.....-..+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 7777763 34588999987643222111 111122222222 56777887754 35788888763
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.21 E-value=0.068 Score=44.12 Aligned_cols=147 Identities=12% Similarity=-0.016 Sum_probs=77.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCC---CCcEEEEEcC---C----Ce
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVH---QPHMVYTGSD---D----CK 173 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d----g~ 173 (331)
....++|.|+++ |+++..+|.|++++. +++ ..+..+. ........++++|+ ++.++++-+. + ..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 456888888887 555566688888873 343 3333221 12345789999984 3444444332 3 56
Q ss_pred EEEEEccCCC-----ceeeeeccc-CCCcceEEEEEecCCCCEEEEEec-------------CCeEEEEEecCCCC----
Q 020107 174 FSGWDIRESP-----FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGSY-------------DEYLRVWDVRSISK---- 230 (331)
Q Consensus 174 i~i~d~~~~~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~---- 230 (331)
|..++..... ....+...+ ........|.|.| ++.+.++.+. .|.|.-++... +.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 7777766431 111122111 1112346799999 8877666442 24555555432 10
Q ss_pred ---CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 231 ---PVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 231 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.......++ .....++|+|+...++++-
T Consensus 185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATE 215 (354)
T ss_dssp SSTTCCEEEECC-SCCCEEEECTTTCCEEEEE
T ss_pred CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEe
Confidence 011111233 2356899999432444443
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.20 E-value=0.07 Score=44.01 Aligned_cols=218 Identities=12% Similarity=-0.004 Sum_probs=110.2
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc----------ccCccEEEEEEcCC---CCeEEEEecC------
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK----------ISSSMCLCLEWNPS---ATSITVGLSD------ 126 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~----------~~~~~v~~~~~~~~---~~~l~~~~~d------ 126 (331)
.....|+|.|+ ++++++ ...|.| +++ .... ........|+|+|+ +..|+++...
T Consensus 31 ~~P~~ia~~pd----G~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 31 EVPWALAFLPD----GGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp SCEEEEEECTT----SCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCceEEEEcCC----CeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 34679999999 775555 455777 444 1110 01345789999998 6666665542
Q ss_pred CeEEEEEccccce---eee-eeee---cccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEccCC----
Q 020107 127 GSVSIVSVVESQL---EVL-QQWK---AHEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIRES---- 182 (331)
Q Consensus 127 g~i~i~d~~~~~~---~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---- 182 (331)
+.|..++...++. +.+ ..+. ........++|.| ++.++++.+. .|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 6788888764321 111 1122 1112246899998 6676666432 145665665431
Q ss_pred --------CceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeE------EEEEecCCC-----------------CC
Q 020107 183 --------PFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL------RVWDVRSIS-----------------KP 231 (331)
Q Consensus 183 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------~iwd~~~~~-----------------~~ 231 (331)
.....+.. ++ .....++|+|.++.++++-.....+ .+.-+..+. .|
T Consensus 184 npf~~~~~~~~~i~a~--G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 184 NPFLGRRGARPEVYSL--GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp CTTTTCTTSCTTEEEE--CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CcccCCCCCCccEEEE--cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 01111111 12 2356788998445555443322221 122222221 12
Q ss_pred ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccc----eeEEeecCCcceeeeeecCCCC
Q 020107 232 VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAE----VLETYAKHGSLAYGADWQRGRS 298 (331)
Q Consensus 232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~ 298 (331)
+.. ..+......++|. ++ .++++.-..+.+..+++...... ....+..-...+.++++.|++.
T Consensus 261 ~~~--~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 261 LYF--WPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA 327 (352)
T ss_dssp SEE--CTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred eEe--cCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence 222 1223345677773 32 44444434455555555433110 0122222235788999999984
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.19 E-value=0.072 Score=43.94 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeee---cccceeEEEeeCCC---CCcEEEEEcCC-----CeEE
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWK---AHEFELWATSFDVH---QPHMVYTGSDD-----CKFS 175 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~i~ 175 (331)
....++|.|+++ ++++...|.|.+++ .++...+..+. ........++++|+ ++.++++-... ..|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 456899999998 55556679999998 34333333221 22346789999984 24444444332 6788
Q ss_pred EEEccCCCc---eeeeeccc---CCCcceEEEEEecCCCCEEEEEe
Q 020107 176 GWDIRESPF---KLAFQNSK---IHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 176 i~d~~~~~~---~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
.++...... ...+...+ ........++|.| ++.+.++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 888764321 11222111 1112346899999 887666643
No 311
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=97.08 E-value=0.1 Score=43.72 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=91.7
Q ss_pred ccEEEEEEcCC-CCeEEEEecCCeEEEEEccccceeeeee-eec-c--------cceeEEEeeCCCCCcEEEEEcCCCeE
Q 020107 106 SMCLCLEWNPS-ATSITVGLSDGSVSIVSVVESQLEVLQQ-WKA-H--------EFELWATSFDVHQPHMVYTGSDDCKF 174 (331)
Q Consensus 106 ~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~l~~~~~dg~i 174 (331)
..+.+|.++|. ...|.++..++.|...+-....+..+.. ... + ...+.+++++|.++..+..+...+ |
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 35788999884 4556667665655444322223322211 000 0 134889999986566777776544 4
Q ss_pred EEEEccCCCceeeeecccCCC---cceEEEEEecCCCCEEEEEec-----------CCeEEEEEecCCCCCceeeeeecC
Q 020107 175 SGWDIRESPFKLAFQNSKIHK---MGVCCIASIPSDSNTLLTGSY-----------DEYLRVWDVRSISKPVNETSVCLG 240 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~ 240 (331)
...+-. ++.-..+.. .... ..+.++.++|.+...|..+.. ++...+|......+..........
T Consensus 256 ~~s~D~-G~tW~~~~~-~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 256 YRMDRR-EGVWKRIGD-AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEETT-TTEEECGGG-GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEeCCC-CCcceECCC-CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 433322 221111111 0011 346778888744555555532 334566666554343333111111
Q ss_pred C-------ceEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeecCCcceeeeeec
Q 020107 241 G-------GVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQ 294 (331)
Q Consensus 241 ~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 294 (331)
. ....++++|..+..+++++..+. +|.-.+. ++.-..+..+-..+.++.|.
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~--l~~S~D~-G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGE--IWASADE-GEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSC--EEEESST-TSBCEEEECSCSCEEEEEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCe--EEEECCC-CCCceEcccCCCCeeEEEEe
Confidence 1 01357888865455555544555 6655554 44444454444557777664
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.24 Score=48.14 Aligned_cols=225 Identities=11% Similarity=0.123 Sum_probs=130.6
Q ss_pred CCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCC
Q 020107 22 SYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGE 101 (331)
Q Consensus 22 ~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~ 101 (331)
|..+.+|.-. ...++|||++... +++.. . ....|.--+|-.. +.|+..+......|++...
T Consensus 75 P~~~iiALra-----------g~~lQiFnl~~k~-klks~-~-~~e~VvfWkWis~-----~~l~lVT~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 75 PASKVIALKA-----------GKTLQIFNIEMKS-KMKAH-T-MTDDVTFWKWISL-----NTVALVTDNAVYHWSMEGE 135 (1630)
T ss_pred CCcceEEEec-----------CCeEEEeehHHhh-hhccc-c-cCCCceEEEecCC-----CeeEEEcCCeEEEeccCCC
Confidence 3336777765 7899999998875 33332 1 2345777777655 2666666666669999653
Q ss_pred cc-----------cCccEEEEEEcCCCCeEEEEe-------cCCeEEEEEccccceeeeeeeecccceeEEEeeC--CCC
Q 020107 102 KI-----------SSSMCLCLEWNPSATSITVGL-------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFD--VHQ 161 (331)
Q Consensus 102 ~~-----------~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 161 (331)
.. ....|..-.-+++.++++..+ -.|.+.+|..+.+. ...+.+|......+... +..
T Consensus 136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~ 212 (1630)
T 1xi4_A 136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEE 212 (1630)
T ss_pred CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---chhhhHhHhhhheeccCCCCCC
Confidence 22 255677777788888865433 25889999987643 34456676555444443 212
Q ss_pred CcEEEEEcC---CCeEEEEEccCC-Cceeeee--------cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCC
Q 020107 162 PHMVYTGSD---DCKFSGWDIRES-PFKLAFQ--------NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 162 ~~~l~~~~~---dg~i~i~d~~~~-~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
..+++.+.. .+.++|-++... .....++ ......+-..++..++ .-..+..-+.-|.|.+||+.++
T Consensus 213 ~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~- 290 (1630)
T 1xi4_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG- 290 (1630)
T ss_pred ceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccc-
Confidence 234433332 378999998653 1111111 1111244456788888 7778888889999999999996
Q ss_pred CCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 230 KPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.++.. ..-...+|...+.+....+. ++....|.+..+.+..
T Consensus 291 ~~i~~-~ris~~~iF~~~~~~~~~g~-~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 291 TCIYM-NRISGETIFVTAPHEATAGI-IGVNRKGQVLSVCVEE 331 (1630)
T ss_pred hhhhh-ccccCCceEEeccCCCCCce-EEEcCCceEEEEEEcc
Confidence 33333 12333344444444333233 3333444433344433
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.95 E-value=0.065 Score=43.03 Aligned_cols=190 Identities=10% Similarity=0.051 Sum_probs=94.8
Q ss_pred CCCeEEEEecC----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEEccCCCce
Q 020107 116 SATSITVGLSD----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWDIRESPFK 185 (331)
Q Consensus 116 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 185 (331)
++..++.|+.+ ..+.+||+.++++..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 55666777654 6788999998877555444322222222222 45777777755 46889998876532
Q ss_pred eeeecccCCCcceEEEEEecCCCCEEEEEec---------CCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCe
Q 020107 186 LAFQNSKIHKMGVCCIASIPSDSNTLLTGSY---------DEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 255 (331)
..-.. +.....-..+.+ ++.+++.|+. -..+.+||+.+. ...... ......-..++...+ .+
T Consensus 132 ~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~--~i 203 (306)
T 3ii7_A 132 TKPSM-LTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKD--KI 203 (306)
T ss_dssp EECCC-SSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETT--EE
T ss_pred eCCCC-cCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECC--EE
Confidence 22111 111122222222 5677777764 344788888763 122100 011111112222222 55
Q ss_pred EEEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCC
Q 020107 256 VLAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPE 325 (331)
Q Consensus 256 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~ 325 (331)
++.+|.+ +.+.++++.......+..+.........+.+ ++ .+++.|| .+ ..+.+||++
T Consensus 204 ~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~i~v~GG-~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 204 FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS---------IVYVLAG-FQGVGRLGHILEYNTE 271 (306)
T ss_dssp EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT---------EEEEEEC-BCSSSBCCEEEEEETT
T ss_pred EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC---------EEEEEeC-cCCCeeeeeEEEEcCC
Confidence 5555543 3445566554333333222211111122222 33 6778887 54 468889887
Q ss_pred Ccc
Q 020107 326 SDC 328 (331)
Q Consensus 326 ~~~ 328 (331)
+..
T Consensus 272 ~~~ 274 (306)
T 3ii7_A 272 TDK 274 (306)
T ss_dssp TTE
T ss_pred CCe
Confidence 764
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.94 E-value=0.035 Score=44.54 Aligned_cols=181 Identities=11% Similarity=0.086 Sum_probs=91.3
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecC--cEeEEEEcCCCCCCCCeEEEEcCCccE------EE
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTA--GIFDIKWSPVGGNAGPFLAQADADGGL------LR 96 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~l~~~~~dg~i------iw 96 (331)
.+++.|++.... .-..+.+||..+.. ...+...... .-..+.+ + +.+++.|+.++.- ++
T Consensus 63 ~lyv~GG~~~~~-----~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 63 LVFAVGGFNGSL-----RVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVL--N----GLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp EEEEESCBCSSS-----BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--T----TEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeCcCCCc-----cccceEEECCCCCc--eeeCCCCCccccceEEEEE--C----CEEEEEcCCCCCccCceEEEE
Confidence 566666632111 23568888887764 3222111111 1112222 3 5577777765432 55
Q ss_pred ecCCCccc--------CccEEEEEEcCCCCeEEEEecC-------CeEEEEEccccceeeeeeeecccceeEEEeeCCCC
Q 020107 97 DITGEKIS--------SSMCLCLEWNPSATSITVGLSD-------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQ 161 (331)
Q Consensus 97 ~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (331)
++.+..-. ......+.+ +++.++.|+.+ ..+.+||+.+.++..+..+.........+.+ +
T Consensus 130 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~ 204 (302)
T 2xn4_A 130 NIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---N 204 (302)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---T
T ss_pred eCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---C
Confidence 55443221 111111222 55666666542 4588999998877555444322222222222 4
Q ss_pred CcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC-----eEEEEEecC
Q 020107 162 PHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE-----YLRVWDVRS 227 (331)
Q Consensus 162 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~ 227 (331)
+.+++.|+.+ ..+.+||+.+.+-...-.. +.....-..+.+ ++.+++.|+.++ .+.+||+.+
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCC
Confidence 5777887754 4688999987653222111 111111222222 567888887654 477888775
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.87 E-value=0.1 Score=41.72 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=50.1
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCC-----eEEEEEccCCCceeeeecccCCCcceEEE
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDC-----KFSGWDIRESPFKLAFQNSKIHKMGVCCI 201 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 201 (331)
..+.+||+.+.++..+..+.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-.. +.......++
T Consensus 77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~ 152 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-NTRRSSVGVG 152 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-SSCCBSCEEE
T ss_pred cceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-CCcccCceEE
Confidence 3577888887766554443322222222222 457777777553 577888887653222111 1112222222
Q ss_pred EEecCCCCEEEEEecC-------CeEEEEEecCC
Q 020107 202 ASIPSDSNTLLTGSYD-------EYLRVWDVRSI 228 (331)
Q Consensus 202 ~~~~~~~~~l~~~~~d-------~~i~iwd~~~~ 228 (331)
.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 153 ~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 153 VV---GGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp EE---TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred EE---CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 22 56777777653 34788888763
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.84 E-value=0.38 Score=46.37 Aligned_cols=194 Identities=8% Similarity=0.010 Sum_probs=110.4
Q ss_pred CCeEEEEe----------cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 117 ATSITVGL----------SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 117 ~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
..++++|+ ..|.|.+|++..++++.+.... ..+++++++-- ++.++++. ..+|++|++...+...
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEE
Confidence 46788886 3588999999866655554443 46678888743 44444433 5889999998665333
Q ss_pred eeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCeEEEEEecCcE
Q 020107 187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGLVLAACMHNGF 265 (331)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
... .... .|..+.... .+++++.|..-..|.++..+.....+..+. ......++++.+-.+ ..++++-..+.+
T Consensus 919 -~~~-~~~~-~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~--~t~l~aD~~gNl 992 (1158)
T 3ei3_A 919 -TEC-NHYN-NIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD--DNFLGAENAFNL 992 (1158)
T ss_dssp -EEE-EECC-CSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET--TEEEEEETTSEE
T ss_pred -EEe-eccc-cEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc--CcEEEEcCCCcE
Confidence 111 0011 133333323 467899998888888877765433333311 234567888888766 677777788888
Q ss_pred EEEEEcCcc-----ccee-EEeecC-Ccceeeee---ecCCCCcccccccCcEEEEeecCCCeEEEE
Q 020107 266 AVVKVGGEK-----AEVL-ETYAKH-GSLAYGAD---WQRGRSSLEGKRKNSLVATCSFYDRLLRIW 322 (331)
Q Consensus 266 ~~~~~~~~~-----~~~~-~~~~~h-~~~v~~~~---~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW 322 (331)
.+++..... ++.+ ..-.-| ...|+++. +.+.+......+....++-++ .+|.|-+.
T Consensus 993 ~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T-~~GsIg~l 1058 (1158)
T 3ei3_A 993 FVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGT-VNGMIGLV 1058 (1158)
T ss_dssp EEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEE-TTSCEEEE
T ss_pred EEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEe-cCCEEEEE
Confidence 888776531 1222 221222 34566654 333220000001113466666 79988765
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.82 E-value=0.16 Score=41.77 Aligned_cols=172 Identities=11% Similarity=0.038 Sum_probs=93.8
Q ss_pred cCCeEEEEEcccc--ceeeeeeeec-----ccceeEEEeeCCC-CC-cEEEEE-cC--CCeEEEEEccCCCceee-eecc
Q 020107 125 SDGSVSIVSVVES--QLEVLQQWKA-----HEFELWATSFDVH-QP-HMVYTG-SD--DCKFSGWDIRESPFKLA-FQNS 191 (331)
Q Consensus 125 ~dg~i~i~d~~~~--~~~~~~~~~~-----~~~~v~~~~~~~~-~~-~~l~~~-~~--dg~i~i~d~~~~~~~~~-~~~~ 191 (331)
.+|.|.++|+++. +.+.+ .+.+ .......+.+.++ ++ .+|+.+ .. +..+.+|++........ +...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 5789999998742 32222 2222 2234556665442 22 234443 33 56888888876433222 2111
Q ss_pred c-CCCcceEEEEEecCCCCEEEEEec-----------------CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCCC
Q 020107 192 K-IHKMGVCCIASIPSDSNTLLTGSY-----------------DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIP 253 (331)
Q Consensus 192 ~-~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (331)
. ..-...+.+.+.+ ++.+.++... .|.|..+|. . + +.. ....-...+.++|+|+++
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~-~~~-~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-D-VRV-VAEGFDFANGINISPDGK 233 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-C-CEE-EEEEESSEEEEEECTTSS
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C-e-EEE-eecCCcccCcceECCCCC
Confidence 1 1234578999999 8877776541 234444443 2 2 222 223334578899999985
Q ss_pred CeEEEEEecCcEEEEEEcCcc-cceeEEeecCCcceeeeeecC-CCCcccccccCcEEEEee
Q 020107 254 GLVLAACMHNGFAVVKVGGEK-AEVLETYAKHGSLAYGADWQR-GRSSLEGKRKNSLVATCS 313 (331)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~ 313 (331)
.++++-+....+..+++.... ......+ ...+..-.+++.+ ++ ++.+++.
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G---------~lwva~~ 285 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG---------DLWVGCH 285 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC---------CEEEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC---------cEEEEec
Confidence 566666667888888886431 1112233 2235566778877 46 5666554
No 318
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.77 E-value=0.19 Score=42.02 Aligned_cols=218 Identities=12% Similarity=0.045 Sum_probs=105.8
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEe-eecCcEeEEEEcCCCCCCCCeEEEEcCCc----cE-----
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYR-MDTAGIFDIKWSPVGGNAGPFLAQADADG----GL----- 94 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~dg----~i----- 94 (331)
..|.+|+ ..| +.+++............. .....|.+|++.|.+ ...|.++...| .+
T Consensus 23 g~l~vgt----------~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~---~~~l~~g~~~g~~g~gl~~s~D 88 (394)
T 3b7f_A 23 VMLLVAT----------IKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPRE---PERMLMAARTGHLGPTVFRSDD 88 (394)
T ss_dssp CEEEEEE----------TTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSS---TTCEEEEEEC--CCEEEEEESS
T ss_pred CEEEEEe----------cCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCC---CCeEEEEecCCCCCccEEEeCC
Confidence 4677777 455 555655431112333211 223569999999843 23444454444 34
Q ss_pred ---EEecCCCc--cc----------CccEEEEEEcCC--CCeEEEEecCCeEEEEEccccceeeeeeee-----------
Q 020107 95 ---LRDITGEK--IS----------SSMCLCLEWNPS--ATSITVGLSDGSVSIVSVVESQLEVLQQWK----------- 146 (331)
Q Consensus 95 ---iw~~~~~~--~~----------~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 146 (331)
-|...... .. ...|.++++.|. ...+.++...+.|...+-....++.+....
T Consensus 89 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 89 GGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp TTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence 23222111 01 125778889873 566777776666655433323333222110
Q ss_pred -----cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-ccC-C--------CcceEEEEEecCCCCEE
Q 020107 147 -----AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-SKI-H--------KMGVCCIASIPSDSNTL 211 (331)
Q Consensus 147 -----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~--------~~~v~~~~~~~~~~~~l 211 (331)
.....+.++.++|.++..+..+..++.|...+- .++.-..+.. ... + ...+.+|.++|.++..|
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l 247 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDIL 247 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEE
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEE
Confidence 012357889998755555555554454433322 1221111110 000 0 13488999998555677
Q ss_pred EEEecCCeEEEEEecCCCCCceeeeeecC----CceEEEEECCCCCCeEEEEE
Q 020107 212 LTGSYDEYLRVWDVRSISKPVNETSVCLG----GGVWRIKHHPFIPGLVLAAC 260 (331)
Q Consensus 212 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ 260 (331)
+.+...+ |...+ ...+.......... ..+..++++|..++.+.++.
T Consensus 248 ~vg~~~g-l~~s~--D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 248 YQQNHCG-IYRMD--RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp EEEETTE-EEEEE--TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred EEEcCCe-EEEeC--CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 7776544 43332 22222221111011 23567888876556666653
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.75 E-value=0.12 Score=39.15 Aligned_cols=152 Identities=7% Similarity=-0.144 Sum_probs=80.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceee----eeeee-cccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEV----LQQWK-AHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
.+..++|+|++.+-++ .+|.+.-.+..+..... -..+- ..-....++.|.| ++.+.++ .||.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5669999998885555 77877666654421100 01110 0011147889998 7676666 569988887644
Q ss_pred CCceeeeec-c---cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCC------ceeeee-ecCCceEEEEECC
Q 020107 182 SPFKLAFQN-S---KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKP------VNETSV-CLGGGVWRIKHHP 250 (331)
Q Consensus 182 ~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~-~~~~~v~~~~~~~ 250 (331)
.....-+.. . ..-=..+..|.+.| ++.+.++. |+.+.- ...+... ...... ..-..-..+.|.|
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 222111100 0 00114679999999 88877776 777433 2221111 111011 1122334466888
Q ss_pred CCCCeEEEEEecCcEEEEEEcCc
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+ +.+.+.. ++. +|.....
T Consensus 192 ~--G~l~~v~-~g~--~Y~~~~p 209 (236)
T 1tl2_A 192 V--GTLFGVQ-GGK--FYEDYPP 209 (236)
T ss_dssp T--SCEEEEE-TTE--EEEESCC
T ss_pred C--CcEEEEe-CCe--EEecCCc
Confidence 8 4455544 443 7776554
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.75 E-value=0.16 Score=40.80 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=93.2
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeecCc-EeEEEEcCCCCCCCCeEEEEcC----CccE----
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDTAG-IFDIKWSPVGGNAGPFLAQADA----DGGL---- 94 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~l~~~~~----dg~i---- 94 (331)
+.+++.|++. . ..-..+.+||..+.. ...+....... -.++... + +.+++.|+. ++..
T Consensus 25 ~~i~v~GG~~--~----~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~-~----~~lyv~GG~~~~~~~~~~~~~ 91 (308)
T 1zgk_A 25 RLIYTAGGYF--R----QSLSYLEAYNPSNGT--WLRLADLQVPRSGLAGCVV-G----GLLYAVGGRNNSPDGNTDSSA 91 (308)
T ss_dssp CCEEEECCBS--S----SBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-T----TEEEEECCEEEETTEEEECCC
T ss_pred CEEEEEeCcC--C----CCcceEEEEcCCCCe--EeECCCCCcccccceEEEE-C----CEEEEECCCcCCCCCCeecce
Confidence 3677877741 1 124568899987764 22221111111 1122222 3 557777776 3322
Q ss_pred --EEecCCCcc--------cCccEEEEEEcCCCCeEEEEecC-----CeEEEEEccccceeeeeeeecccceeEEEeeCC
Q 020107 95 --LRDITGEKI--------SSSMCLCLEWNPSATSITVGLSD-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDV 159 (331)
Q Consensus 95 --iw~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (331)
++++.+..- .......+.+ +++.++.|+.+ ..+.+||+.+.++..+..+.........+.+
T Consensus 92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred EEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 555544321 1111112222 55666666643 4688899988776555443322222222332
Q ss_pred CCCcEEEEEcCC-----CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCC
Q 020107 160 HQPHMVYTGSDD-----CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSI 228 (331)
Q Consensus 160 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 228 (331)
++.+++.|+.+ ..+.+||+.+.+-...-.. +.....-..+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 168 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-CCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 45777777754 4688999887643222111 111222222333 56788888765 45888998763
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.74 E-value=0.18 Score=43.18 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeec------ccceeEEEeeCCC---CCcEEEEEcC-------
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA------HEFELWATSFDVH---QPHMVYTGSD------- 170 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~l~~~~~------- 170 (331)
....|+|.|+|+++++-...+.|++++..+++...+..+.. .......++|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 34688888888755554434468877765454333333321 2456778999984 4444444332
Q ss_pred -----CCeEEEEEccCCC-----ceeeeeccc-CCCcceEEEEEecCCCCEEEEEe
Q 020107 171 -----DCKFSGWDIRESP-----FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 171 -----dg~i~i~d~~~~~-----~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
...|.-++..... ....+...+ ........|.|.| ++.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence 2355556554321 111222111 1123478999999 887776654
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.74 E-value=0.17 Score=40.86 Aligned_cols=108 Identities=8% Similarity=0.012 Sum_probs=58.5
Q ss_pred cCCCCeEEEEec----C-------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC--------CeE
Q 020107 114 NPSATSITVGLS----D-------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD--------CKF 174 (331)
Q Consensus 114 ~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i 174 (331)
..++..++.|+. + ..+..||+.++++..+..+.........+.+ ++.+++.|+.+ ..+
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceE
Confidence 346677777773 1 1277889988776554433321111122222 45777777732 458
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-C-----CeEEEEEecCC
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-D-----EYLRVWDVRSI 228 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~ 228 (331)
.+||+.+.+-...-.. +.....-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 120 ~~~d~~~~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 120 MCYDRLSFKWGESDPL-PYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp EEEETTTTEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred EEECCCCCcEeECCCC-CCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 8999987642221111 111222222222 5678888876 2 45888888763
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.73 E-value=0.18 Score=41.23 Aligned_cols=144 Identities=12% Similarity=0.012 Sum_probs=80.4
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec---ccCCCcceEEEEEecC---CCCEEEEE--ecCCe
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN---SKIHKMGVCCIASIPS---DSNTLLTG--SYDEY 219 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~l~~~--~~d~~ 219 (331)
.-...+.++|.| ++.++++--..|.|++++...++....... ..........|+++|. ++.+.++- ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 344578999999 777777665589999998765543222111 1123567899999982 24333332 23455
Q ss_pred EEEEEecCCC----C--Cceeeee----ecCCceEEEEECCCCCCeEEEEEe-------------cCcEEEEEEcCccc-
Q 020107 220 LRVWDVRSIS----K--PVNETSV----CLGGGVWRIKHHPFIPGLVLAACM-------------HNGFAVVKVGGEKA- 275 (331)
Q Consensus 220 i~iwd~~~~~----~--~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~- 275 (331)
|.-|.+.... . ....++. ........|+|.|++ .++++.+. .+. |+++.....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~--IlRi~~dG~i 185 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGK--ILRMTPDGEP 185 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTC--EEEECTTSSB
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCE--EEEEeCCCCc
Confidence 6666655411 1 1111111 112234679999996 56666543 234 777765421
Q ss_pred --------ceeEEeecCCcceeeeeecCCC
Q 020107 276 --------EVLETYAKHGSLAYGADWQRGR 297 (331)
Q Consensus 276 --------~~~~~~~~h~~~v~~~~~~~~~ 297 (331)
..+. -.+|. ....++|.|++
T Consensus 186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G 213 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQ 213 (347)
T ss_dssp CTTCSSTTCCEE-EBCCS-BCCEEEECTTC
T ss_pred cCCCCCCCCeEE-eeCCC-CcceEEECCCC
Confidence 1122 22554 45689999976
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.61 E-value=0.087 Score=44.07 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=77.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccce----------eeeeeeec------ccceeEEEeeCCCC--CcEEEEE
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQL----------EVLQQWKA------HEFELWATSFDVHQ--PHMVYTG 168 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~------~~~~v~~~~~~~~~--~~~l~~~ 168 (331)
.+..+..+|+|++||..+. ..|.|..+..+.. ...+.+.- ...+|..+.|+|.. +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 4567889999999988765 5788888873210 01122322 24679999999953 3588899
Q ss_pred cCCCeEEEEEccCCCceee-eec------ccCCCcceEEEEEecCCCCEEEEEe--cCCeEEEE
Q 020107 169 SDDCKFSGWDIRESPFKLA-FQN------SKIHKMGVCCIASIPSDSNTLLTGS--YDEYLRVW 223 (331)
Q Consensus 169 ~~dg~i~i~d~~~~~~~~~-~~~------~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~iw 223 (331)
..|+.|++||+......+. +.. .......|.+++|.+ ++-.|...+ +.|-|.-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9999999999986332222 211 112336789999998 777777755 77777553
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.61 E-value=0.2 Score=40.20 Aligned_cols=190 Identities=11% Similarity=0.085 Sum_probs=92.6
Q ss_pred CCCeEEEEec----C-----CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-----CeEEEEEccC
Q 020107 116 SATSITVGLS----D-----GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-----CKFSGWDIRE 181 (331)
Q Consensus 116 ~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 181 (331)
++..++.|+. + ..+.+||+.+.++..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5566666665 2 4688899988776555443322222222332 45777777643 4688899887
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC-----CeEEEEEecCCCCCceeee-eecCCceEEEEECCCCCCe
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD-----EYLRVWDVRSISKPVNETS-VCLGGGVWRIKHHPFIPGL 255 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 255 (331)
.+-...-.. +.....-..+.+ ++.+++.|+.+ ..+.+||+.+.. ..... ......-.+++.. ++ .+
T Consensus 147 ~~W~~~~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~-~i 218 (308)
T 1zgk_A 147 DEWHLVAPM-LTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HN-CI 218 (308)
T ss_dssp TEEEECCCC-SSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TT-EE
T ss_pred CeEeECCCC-CccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE-CC-EE
Confidence 643222111 111222222222 56777888765 458888887531 11100 0111111122222 21 45
Q ss_pred EEEEEec-----CcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC-----CeEEEEcCC
Q 020107 256 VLAACMH-----NGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD-----RLLRIWMPE 325 (331)
Q Consensus 256 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d-----~~i~iW~~~ 325 (331)
++.+|.+ +.+.++++.......+..+....... ++... ++ ++++.|| .+ ..+.+||++
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~---------~i~v~GG-~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITVH-QG---------RIYVLGG-YDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TT---------EEEEECC-BCSSCBCCEEEEEETT
T ss_pred EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEEE-CC---------EEEEEcC-cCCCcccceEEEEcCC
Confidence 5555443 44556665554333332222111111 12222 33 6788887 44 457888887
Q ss_pred Ccc
Q 020107 326 SDC 328 (331)
Q Consensus 326 ~~~ 328 (331)
+..
T Consensus 287 ~~~ 289 (308)
T 1zgk_A 287 TDT 289 (308)
T ss_dssp TTE
T ss_pred CCE
Confidence 764
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.49 E-value=0.21 Score=41.09 Aligned_cols=150 Identities=7% Similarity=-0.062 Sum_probs=77.2
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee----ecccceeEEEeeCCC---CCcEEEEEcC-------CC
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW----KAHEFELWATSFDVH---QPHMVYTGSD-------DC 172 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~-------dg 172 (331)
....|+|.|+++.|+++...|.|++++........+..+ .........++++|+ ++.+.++-.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 356888999988455556678888888543211111111 112345688999984 3444444332 23
Q ss_pred eEEEEEccCCC----cee-eeeccc---CCCcceEEEEEecCCCCEEEEEec-------------CCeEEEEEecCCC--
Q 020107 173 KFSGWDIRESP----FKL-AFQNSK---IHKMGVCCIASIPSDSNTLLTGSY-------------DEYLRVWDVRSIS-- 229 (331)
Q Consensus 173 ~i~i~d~~~~~----~~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~-- 229 (331)
.|..+++.... ... .+...+ ........|.|.| ++.+.++.+. .|.|.-+|....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 56666664321 111 122211 0112245799999 8866555433 2456666654310
Q ss_pred -C--------CceeeeeecCCceEEEEECCCCCCeEEEE
Q 020107 230 -K--------PVNETSVCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 230 -~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
. .......++ .....++|+|.. +.+.++
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~-g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWS-NALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTT-TEEEEE
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCC-CCEEEE
Confidence 0 111111222 347889999943 444444
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.36 E-value=0.41 Score=40.92 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=61.6
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeeccc-----CCCcceEEEEEecCC---CCEEEEEe-c----
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSK-----IHKMGVCCIASIPSD---SNTLLTGS-Y---- 216 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~---~~~l~~~~-~---- 216 (331)
...+.++|.| ++.++++-...+.|++++...++......... .....+..|+|+| + ...|+... .
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEeccccC
Confidence 3467999998 77777765544578888865554322222111 1246688999999 4 44444443 2
Q ss_pred --------CCeEEEEEecCCCCCc---eeeee----ecCCceEEEEECCCCCCeEEEEEe
Q 020107 217 --------DEYLRVWDVRSISKPV---NETSV----CLGGGVWRIKHHPFIPGLVLAACM 261 (331)
Q Consensus 217 --------d~~i~iwd~~~~~~~~---~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~ 261 (331)
...|.-|++......+ ..++. ........|+|.|++ .++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 2356666654321111 11111 112347889999997 56666653
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.84 E-value=0.55 Score=37.74 Aligned_cols=101 Identities=7% Similarity=-0.006 Sum_probs=52.2
Q ss_pred EEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC-----C------CeEEEEEccCCCceeee
Q 020107 120 ITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD-----D------CKFSGWDIRESPFKLAF 188 (331)
Q Consensus 120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~~ 188 (331)
++.|+ ..+..||..++++.. ..+..........+... ++.+++.|+. . ..+..||..+.+-...-
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 44454 578999999887743 22321111122222222 5677777773 1 12778888876432211
Q ss_pred ecccCCCcceEEEEEecCCCCEEEEEecC--------CeEEEEEecCC
Q 020107 189 QNSKIHKMGVCCIASIPSDSNTLLTGSYD--------EYLRVWDVRSI 228 (331)
Q Consensus 189 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~ 228 (331)
.. +.....-..+.+ ++.+++.|+.+ ..+.+||..+.
T Consensus 84 ~~-p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~ 127 (315)
T 4asc_A 84 PL-PSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSF 127 (315)
T ss_dssp CB-SSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTT
T ss_pred CC-CcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCC
Confidence 11 111111122222 56777777743 35888888763
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.68 E-value=1.2 Score=40.44 Aligned_cols=190 Identities=11% Similarity=0.062 Sum_probs=99.5
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeE-e------eecCcEeEEEEcC-CCCCCCCeEEEEcCCcc---
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLY-R------MDTAGIFDIKWSP-VGGNAGPFLAQADADGG--- 93 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~~~~~l~~~~~dg~--- 93 (331)
.+++.|++.. . .-..+.+||..+.. ...+. . .....-.++...+ + +.+++.|+.++.
T Consensus 399 ~iyv~GG~~~-~-----~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~----~~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 399 DVFYMGGSNP-Y-----RVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRN----NQLLLIGGRKAPHQG 466 (695)
T ss_dssp CEEEECCBSS-S-----BCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTT----TEEEEECCBSSTTCB
T ss_pred EEEEECCCCC-C-----CcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccC----CEEEEEcCCCCCCCc
Confidence 5677776432 1 24568889988765 33332 1 1111122333333 5 668888876542
Q ss_pred E----EEecCCCcc-------cCccEEEEEEcCCCCeEEEEecCC--eEEEEEccccceeeeee---eecccceeEEEee
Q 020107 94 L----LRDITGEKI-------SSSMCLCLEWNPSATSITVGLSDG--SVSIVSVVESQLEVLQQ---WKAHEFELWATSF 157 (331)
Q Consensus 94 i----iw~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~ 157 (331)
. +++..+..- ....-.++....+++.++.|+.++ .+.+||+.+.++..+.. +........++.+
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEE
T ss_pred cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEE
Confidence 2 555554321 111112233323777888887644 79999999887755443 2211222233555
Q ss_pred CCCCCcEEEEEcC--C-----CeEEEEEccCCCc------eeeeecccCCCcceEEEEEecCCCCEEEEEecC-------
Q 020107 158 DVHQPHMVYTGSD--D-----CKFSGWDIRESPF------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------- 217 (331)
Q Consensus 158 ~~~~~~~l~~~~~--d-----g~i~i~d~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 217 (331)
....+.+++.|+. + ..+.+||+.+... ...............++.+. ++.+++.|+.+
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDR 624 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCT
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCC
Confidence 5423677788775 2 4688999988761 11111000112222333332 37788888753
Q ss_pred -CeEEEEEecCC
Q 020107 218 -EYLRVWDVRSI 228 (331)
Q Consensus 218 -~~i~iwd~~~~ 228 (331)
..+.+||+.+.
T Consensus 625 ~~~v~~yd~~t~ 636 (695)
T 2zwa_A 625 TNSIISLDPLSE 636 (695)
T ss_dssp TTSEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 45788888763
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.57 E-value=0.72 Score=37.10 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=57.1
Q ss_pred cCCCCeEEEEec----CC-------eEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCC-------CeEE
Q 020107 114 NPSATSITVGLS----DG-------SVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDD-------CKFS 175 (331)
Q Consensus 114 ~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~ 175 (331)
..++..++.|+. ++ .+..||..+.++..+..+.........+.+ ++.+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence 346667777763 12 277889888776554433322212222222 45777777753 3578
Q ss_pred EEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecC------CeEEEEEecCC
Q 020107 176 GWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD------EYLRVWDVRSI 228 (331)
Q Consensus 176 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~ 228 (331)
+||+.+.+-...-.. +.....-..+. . ++.+++.|+.+ ..+.+||+.+.
T Consensus 131 ~yd~~~~~W~~~~~~-p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 131 CYDPVAAKWSEVKNL-PIKVYGHNVIS--H-NGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp EEETTTTEEEEECCC-SSCEESCEEEE--E-TTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred EEeCCCCCEeECCCC-CCcccccEEEE--E-CCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 888887643222111 11111112222 2 67777777752 35888888763
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.41 E-value=0.81 Score=37.49 Aligned_cols=96 Identities=7% Similarity=0.052 Sum_probs=49.4
Q ss_pred CCCeEEEEec-CCeEEEEEccc--cceeeeeeee-cccceeEEEeeCCCCCcEEEEEcC-C---------CeEEEEEccC
Q 020107 116 SATSITVGLS-DGSVSIVSVVE--SQLEVLQQWK-AHEFELWATSFDVHQPHMVYTGSD-D---------CKFSGWDIRE 181 (331)
Q Consensus 116 ~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~ 181 (331)
++..++.|+. ...+.+||+.+ .++..+..+. ........+.+ ++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 4555555554 45788899874 5554444333 11111222222 4577777775 2 4688999987
Q ss_pred CCceeeeecccCCCcceEEEEEecCCCCEEEEEecC
Q 020107 182 SPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 217 (331)
.+-...-...+.....-.++. . ++.+++.|+.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCC
T ss_pred CcEEECCCCCCcccccceEEE--E-CCEEEEEeCcC
Confidence 643222111101122222233 2 67888888764
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.40 E-value=0.62 Score=35.26 Aligned_cols=107 Identities=8% Similarity=-0.124 Sum_probs=63.6
Q ss_pred ceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcc--------eEEEEEecCCCCEEEEEecCCeEE
Q 020107 150 FELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMG--------VCCIASIPSDSNTLLTGSYDEYLR 221 (331)
Q Consensus 150 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~d~~i~ 221 (331)
..+..++|+| ++.+.++ .+|.+.-.+..+... ..+.. .... -.++.|.| ++.+.++ .||.|.
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~---s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMG---RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHH---HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEE
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccc---cccEecccccccceEEEECC-CCCEEEe--CCCEEE
Confidence 3577999999 7776665 678777666554332 11211 1222 37889999 8877777 569888
Q ss_pred EEEecCCCC-Cce-eeeee---cCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 222 VWDVRSISK-PVN-ETSVC---LGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 222 iwd~~~~~~-~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
-++-.+... ... .-..- -=..+..|.+.|+ +.|.+.. ++. +++..
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~--G~Lyav~-dg~--lyr~~ 160 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN--GYLYAVH-GQQ--FYKAL 160 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT--SCEEEEE-TTE--EEEEC
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCC--ceEEEEe-CCc--EEecC
Confidence 777533211 110 00011 1146799999999 5666666 665 44433
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.38 E-value=1.1 Score=40.68 Aligned_cols=110 Identities=13% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCCCeEEEEecC----CeEEEEEccccceeeee-e-----eecccceeEEEeeCCCCCcEEEEEcCC------CeEEEEE
Q 020107 115 PSATSITVGLSD----GSVSIVSVVESQLEVLQ-Q-----WKAHEFELWATSFDVHQPHMVYTGSDD------CKFSGWD 178 (331)
Q Consensus 115 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d 178 (331)
.++..++.|+.+ ..+.+||+.++++..+. . +......-..+.+.. ++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 355666666643 46888999888775544 2 111111222333321 55777777744 3578899
Q ss_pred ccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCC--eEEEEEecCC
Q 020107 179 IRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE--YLRVWDVRSI 228 (331)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 228 (331)
+.+.+-...-.. +.....- +++... ++.+++.|+.++ .+.+||..+.
T Consensus 475 ~~t~~W~~~~~~-p~~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 475 MKTREWSMIKSL-SHTRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTTEEEECCCC-SBCCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCCCcEEECCCC-CCCcccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCC
Confidence 887542222111 1111222 222223 678888888655 6888888763
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.16 E-value=1 Score=36.40 Aligned_cols=196 Identities=7% Similarity=0.087 Sum_probs=112.6
Q ss_pred eecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec----CcEeEEEEcCCCCCCC
Q 020107 7 ELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT----AGIFDIKWSPVGGNAG 82 (331)
Q Consensus 7 ~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~ 82 (331)
.+..++.-=+|... +.|+.-+ +..|+-|++.....+.+.+ ..|. ..|..-+-+++ .
T Consensus 104 ~~~e~VvfWkWis~----~~L~lVT-----------~taVyHWs~~~~s~P~kvF-dR~~~L~~~QIInY~~d~~----~ 163 (365)
T 2xzh_A 104 TMTDDVTFWKWISL----NTVALVT-----------DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK----Q 163 (365)
T ss_dssp ECSSCEEEEEECSS----SEEEEEE-----------SSEEEEEESSTTCCCEEEE-ECCGGGTTCEEEEEEECTT----S
T ss_pred ecCCccEEEEecCC----CeEEEEc-----------CCcEEEEcccCCCCCceee-ecchhcccceEEEEEECCC----C
Confidence 34444444445443 4666666 7799999998765455444 4452 35777777888 7
Q ss_pred CeEEEEc---CCccE-----EEecCCCccc--CccEEE-EEEcCCCC-----eEEEEec---CCeEEEEEcccc---cee
Q 020107 83 PFLAQAD---ADGGL-----LRDITGEKIS--SSMCLC-LEWNPSAT-----SITVGLS---DGSVSIVSVVES---QLE 140 (331)
Q Consensus 83 ~~l~~~~---~dg~i-----iw~~~~~~~~--~~~v~~-~~~~~~~~-----~l~~~~~---dg~i~i~d~~~~---~~~ 140 (331)
++++..+ .++.+ ++..+..... .+..-+ ..+-.+|+ .++.+.. .+.+++.++... ...
T Consensus 164 kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~ 243 (365)
T 2xzh_A 164 KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 243 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC
T ss_pred CEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC
Confidence 7765543 35555 7777765431 111111 12222222 2333322 268889888542 100
Q ss_pred ----eeee-eec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 141 ----VLQQ-WKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 141 ----~~~~-~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
.+.. +.. ..+-.-++..++ .-..++.-+.-|.|++||+.++.++..-+. ....|..-+... ...=++.
T Consensus 244 f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrI---S~d~iF~ta~~~-~~~Gi~~ 318 (365)
T 2xzh_A 244 FPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE-ATAGIIG 318 (365)
T ss_dssp CCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEEG-GGTEEEE
T ss_pred cccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEecc---CCCceEEecccC-CCCcEEE
Confidence 0110 111 112233666675 567788888999999999999988776666 566666555554 3333444
Q ss_pred EecCCeEEEEEecC
Q 020107 214 GSYDEYLRVWDVRS 227 (331)
Q Consensus 214 ~~~d~~i~iwd~~~ 227 (331)
-...|.|.-..++.
T Consensus 319 Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 319 VNRKGQVLSVCVEE 332 (365)
T ss_dssp EETTCEEEEEEECT
T ss_pred EcCCCEEEEEEECc
Confidence 44778777776665
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.03 E-value=1.3 Score=43.34 Aligned_cols=198 Identities=9% Similarity=0.080 Sum_probs=112.1
Q ss_pred EEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCC-Cceeeeec
Q 020107 112 EWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRES-PFKLAFQN 190 (331)
Q Consensus 112 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 190 (331)
-.+|..+.+|.-. ..++.|+|+++... ++.... ..+|.--.|- +.+.|+..+ +..|..|++... .+.+.+..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~k--lks~~~-~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSK--MKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhh--hccccc-CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 3567776666654 68999999988643 444443 3356667776 345666555 678999999642 22333333
Q ss_pred cc-CCCcceEEEEEecCCCCEEEEEe-------cCCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC-CCeEEEEEe
Q 020107 191 SK-IHKMGVCCIASIPSDSNTLLTGS-------YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI-PGLVLAACM 261 (331)
Q Consensus 191 ~~-~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 261 (331)
.. -....|..-..++ +.++++..| -.|.+.+|..... +.+...+|.+....+...... +..+++-..
T Consensus 145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~---~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc---cchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 00 0144566666777 666666543 3578999988763 222235665555444433211 122333322
Q ss_pred c----CcEEEEEEcCc-ccceeEE------eec---CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 262 H----NGFAVVKVGGE-KAEVLET------YAK---HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 262 ~----~~~~~~~~~~~-~~~~~~~------~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
. +.+++..+... .+..... +-. -.+--.++..++.. .++.... .-|.|+++|++++
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~---------g~iy~it-k~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---------DVVFLIT-KYGYIHLYDLETG 290 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc---------CEEEEEe-cCceEEEEecccc
Confidence 2 57778888553 1111110 000 12223345555554 4677777 8999999999998
Q ss_pred ccC
Q 020107 328 CLT 330 (331)
Q Consensus 328 ~~~ 330 (331)
...
T Consensus 291 ~~i 293 (1630)
T 1xi4_A 291 TCI 293 (1630)
T ss_pred hhh
Confidence 653
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.80 E-value=1.4 Score=36.07 Aligned_cols=51 Identities=6% Similarity=-0.212 Sum_probs=29.6
Q ss_pred CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcC------CCeEEEEEc
Q 020107 127 GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSD------DCKFSGWDI 179 (331)
Q Consensus 127 g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~ 179 (331)
..+.+||+.+.++..+..+......-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57899999988876655443211111223322 4567777763 345677876
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.18 E-value=2 Score=35.29 Aligned_cols=218 Identities=17% Similarity=0.063 Sum_probs=109.8
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCcc---------cCccEEEEEEcCC---CCeEEEEec----C---
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEKI---------SSSMCLCLEWNPS---ATSITVGLS----D--- 126 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~~---------~~~~v~~~~~~~~---~~~l~~~~~----d--- 126 (331)
.....|+|.|+ ++++++ ..+|.| +++....+. .......|+++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pd----G~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGG----GRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEET----TEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCC----CeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45688999999 765554 555777 444222100 1245788999997 556665543 2
Q ss_pred -CeEEEEEcccc--ce---eee-eeeec-ccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEccCCC--
Q 020107 127 -GSVSIVSVVES--QL---EVL-QQWKA-HEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIRESP-- 183 (331)
Q Consensus 127 -g~i~i~d~~~~--~~---~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-- 183 (331)
..|..++.... .. +.+ ..+.. .......++|.| ++.++++.+. .|.|.-++....-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777776643 11 111 11221 111246789998 7776666432 2455555554210
Q ss_pred -----ceeeeecccCCCcceEEEEEecCCCCEEEEEecCC---eEEEEEecCCC-----------------CCceeeeee
Q 020107 184 -----FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDE---YLRVWDVRSIS-----------------KPVNETSVC 238 (331)
Q Consensus 184 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~-----------------~~~~~~~~~ 238 (331)
....+.. ++ .....++|+|.++.++++-.... .|.+.. .+. .++.. ...
T Consensus 183 ~npf~~~~i~a~--G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~-~~~ 256 (354)
T 3a9g_A 183 DNPFPNSPIWSY--GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVID-TGS 256 (354)
T ss_dssp TSSSTTCCEEEE--CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE-CTT
T ss_pred CCCCCCCcEEEE--cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEee-cCC
Confidence 0112221 12 23467899984455544432221 233322 211 12222 101
Q ss_pred cCCceEEEEECCC-----CCCeEEEEE-ecCcEEEEEEcCccccee--EEee-cCCcceeeeeecCCC
Q 020107 239 LGGGVWRIKHHPF-----IPGLVLAAC-MHNGFAVVKVGGEKAEVL--ETYA-KHGSLAYGADWQRGR 297 (331)
Q Consensus 239 ~~~~v~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~ 297 (331)
.......++|... -++.++++. ..+.+..+++... ++.. ..+. +....+.++++.|++
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-MEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-GCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-CcccceeeeccCCCCCeeEEEECCCC
Confidence 2345777888421 114444443 4455555555542 2221 2232 224578899999998
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.42 E-value=2.5 Score=33.89 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=50.2
Q ss_pred EEEEecCCeEEEEEccccceeeeeeeec-ccceeEEEeeCCCCCcEEEEEcC----CC-------eEEEEEccCCCceee
Q 020107 120 ITVGLSDGSVSIVSVVESQLEVLQQWKA-HEFELWATSFDVHQPHMVYTGSD----DC-------KFSGWDIRESPFKLA 187 (331)
Q Consensus 120 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~ 187 (331)
++.|+. .+..||..++++.. ..+.. ....-.+++ . .++.+++.|+. ++ .+..||..+.+-...
T Consensus 19 ~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~-~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 19 LLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIV-T-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEE-C-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhcccc--ceEEECCCCCceec-ccCCccCCccceEEE-E-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 444443 47899999887644 22221 111122232 2 25677888873 12 277888876643222
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEEecC-------CeEEEEEecC
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTGSYD-------EYLRVWDVRS 227 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~ 227 (331)
-.. +.....-..+.+ ++.+++.|+.+ ..+.+||..+
T Consensus 94 ~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 136 (318)
T 2woz_A 94 PPL-PSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVA 136 (318)
T ss_dssp SCB-SSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTT
T ss_pred CCC-CccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCC
Confidence 111 111112222222 56777888764 2477788765
No 339
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.39 E-value=2.8 Score=34.38 Aligned_cols=139 Identities=11% Similarity=0.003 Sum_probs=73.4
Q ss_pred CcEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------c------cCccEEEEEEcCC---CCeEEEEec-----
Q 020107 67 AGIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------I------SSSMCLCLEWNPS---ATSITVGLS----- 125 (331)
Q Consensus 67 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~------~~~~v~~~~~~~~---~~~l~~~~~----- 125 (331)
.....|+|.|+ ++.|.++...|.| +.+..... . .......|+++|+ +..|++...
T Consensus 18 ~~P~~i~~~pd----G~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPD----NHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECST----TCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCC----CCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 45689999999 7734445556877 55432210 0 1234588999996 556655532
Q ss_pred ---CCeEEEEEcccc--ceeeee----eeec---ccceeEEEeeCCCCCcEEEEEcC-------------CCeEEEEEcc
Q 020107 126 ---DGSVSIVSVVES--QLEVLQ----QWKA---HEFELWATSFDVHQPHMVYTGSD-------------DCKFSGWDIR 180 (331)
Q Consensus 126 ---dg~i~i~d~~~~--~~~~~~----~~~~---~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~ 180 (331)
...|..+++... +..... .+.. .......++|.| ++.++++.+. .|.|.-+|..
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666432 111111 1110 111245799998 6666666543 2466666665
Q ss_pred CCC------------ceeeeecccCCCcceEEEEEecCCCCEEEE
Q 020107 181 ESP------------FKLAFQNSKIHKMGVCCIASIPSDSNTLLT 213 (331)
Q Consensus 181 ~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 213 (331)
..- ....+.. --.....++|+|.++.++++
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~---G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSY---GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEE---CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEEE---cCcCccceEEECCCCCEEEE
Confidence 320 1122221 12346789999844444443
No 340
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.71 E-value=6.1 Score=36.48 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=76.4
Q ss_pred cCcEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCcc-----cCccEEEEEEcCCC-CeEEEEecCCe---
Q 020107 66 TAGIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKI-----SSSMCLCLEWNPSA-TSITVGLSDGS--- 128 (331)
Q Consensus 66 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~~~dg~--- 128 (331)
.+.|.+|+++|.++ ..+.++...+.+ -|....... ....+.+|+++|.. +.++++..+..
T Consensus 14 ~g~i~~i~~~p~~~---~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTK---DLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSST---TCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCC---CEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCc
Confidence 45799999999853 366666666666 454433211 23468999999853 44555443211
Q ss_pred -EEEEEccc-c-ceeeeee-ee--c---ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccC-CCceeeeeccc---CCC
Q 020107 129 -VSIVSVVE-S-QLEVLQQ-WK--A---HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRE-SPFKLAFQNSK---IHK 195 (331)
Q Consensus 129 -i~i~d~~~-~-~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~---~~~ 195 (331)
-.||.... + .++.+.. +. . ....+..++++|.+++.++.+...+.| |-... ++.-..+...+ ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCC
Confidence 23333332 2 2222211 00 0 011355688888666777777644433 33322 22211111100 012
Q ss_pred cceEEEEEecCCCCEEEEEecC
Q 020107 196 MGVCCIASIPSDSNTLLTGSYD 217 (331)
Q Consensus 196 ~~v~~~~~~~~~~~~l~~~~~d 217 (331)
..+..|.++|.++..++.+..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 4688899998666666666654
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.44 E-value=3.8 Score=33.47 Aligned_cols=109 Identities=12% Similarity=-0.026 Sum_probs=62.7
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccceeeeeee----ecccceeEEEeeCCC---CCcEEEEE--cCCCeEEE
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQW----KAHEFELWATSFDVH---QPHMVYTG--SDDCKFSG 176 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~l~~~--~~dg~i~i 176 (331)
.....|+|.|++..+++--..|.|++++...++...+..+ .........++++|+ ++.+.++- ..+..|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3457889999988666554489998888665544333222 223456789999983 34443332 23456666
Q ss_pred EEccCCC--------ceeeeeccc-CCCcceEEEEEecCCCCEEEEEe
Q 020107 177 WDIRESP--------FKLAFQNSK-IHKMGVCCIASIPSDSNTLLTGS 215 (331)
Q Consensus 177 ~d~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 215 (331)
|.+.... ....+...+ ........|.|.| ++.+.++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence 6655421 112222111 1122346799999 887777754
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.30 E-value=4.6 Score=34.14 Aligned_cols=197 Identities=7% Similarity=0.081 Sum_probs=115.5
Q ss_pred eeecCcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEeeec----CcEeEEEEcCCCCCC
Q 020107 6 CELDGNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRMDT----AGIFDIKWSPVGGNA 81 (331)
Q Consensus 6 ~~~~~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~ 81 (331)
+.+..++.-=+|... +.|+.-+ +..|+-|++.....+.+.+ ..|. ..|..-+-+++
T Consensus 102 ~~~~e~VvfWkWis~----~~l~lVT-----------~taVyHWsi~~~s~P~kvF-dR~~~L~~~QIInY~~d~~---- 161 (494)
T 1bpo_A 102 HTMTDDVTFWKWISL----NTVALVT-----------DNAVYHWSMEGESQPVKMF-DRHSSLAGCQIINYRTDAK---- 161 (494)
T ss_dssp EECSSCCCEEEEEET----TEEEEEC-----------SSEEEEEESSSSCCCEEEE-ECCGGGTTCEEEEEEECTT----
T ss_pred eecCCCceEEEecCC----CeEEEEc-----------CCeeEEecccCCCCchhhe-ecchhcccceEEEEEECCC----
Confidence 344455555566554 4677765 7799999998765455444 4452 35777788888
Q ss_pred CCeEEEEc---CCccE-----EEecCCCccc--CccE-EEEEEcCCCC-----eEEEEec---CCeEEEEEcccc---ce
Q 020107 82 GPFLAQAD---ADGGL-----LRDITGEKIS--SSMC-LCLEWNPSAT-----SITVGLS---DGSVSIVSVVES---QL 139 (331)
Q Consensus 82 ~~~l~~~~---~dg~i-----iw~~~~~~~~--~~~v-~~~~~~~~~~-----~l~~~~~---dg~i~i~d~~~~---~~ 139 (331)
.++++..+ .++.+ ++..+..... .+.. .-..+-.+|+ .++.+.. .+.+++.++... ..
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred CCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 77776443 35555 7777765431 1111 1112222221 2333333 378999988543 10
Q ss_pred e----eeee-eec--ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEE
Q 020107 140 E----VLQQ-WKA--HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLL 212 (331)
Q Consensus 140 ~----~~~~-~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 212 (331)
. .+.. +.. ..+-.-++..++ .-..++.-+.-|.|++||+.++.++..-+. ....|..-+... ...=++
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~-~~~Gi~ 316 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHE-ATAGII 316 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEET-TTTEEE
T ss_pred CccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecc---cCCceEEecccC-CCCcEE
Confidence 0 0110 111 112233677776 667888888999999999999988776665 566666666555 333444
Q ss_pred EEecCCeEEEEEecC
Q 020107 213 TGSYDEYLRVWDVRS 227 (331)
Q Consensus 213 ~~~~d~~i~iwd~~~ 227 (331)
.....|.|.--.+..
T Consensus 317 ~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 317 GVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEETTCEEEEEEECT
T ss_pred EEccCceEEEEEEcc
Confidence 445778777776665
No 343
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=90.79 E-value=10 Score=35.05 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeeeeec----ccceeEEEeeCCCCCcEEEEEcCCCe----EE
Q 020107 105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQWKA----HEFELWATSFDVHQPHMVYTGSDDCK----FS 175 (331)
Q Consensus 105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~----i~ 175 (331)
...|.+|+++|.. ..++++...+.|...+-....++++..... ....+.+++++|.+.+.++.+..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 4678999999964 557777777776655533334433322111 12468999999855555555542211 23
Q ss_pred EEEcc-CCCceeeeecc-c-----CCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-----ecCCce
Q 020107 176 GWDIR-ESPFKLAFQNS-K-----IHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-----CLGGGV 243 (331)
Q Consensus 176 i~d~~-~~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v 243 (331)
||-.. .++.-..+... . .....+..++++|.++..++.+...+. ||-.....+....... .....+
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCCe
Confidence 44333 23221111110 0 011135678888855667777764443 3434333333332111 112457
Q ss_pred EEEEECCCCCCeEEEEEec-CcEEEEEEcC
Q 020107 244 WRIKHHPFIPGLVLAACMH-NGFAVVKVGG 272 (331)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 272 (331)
..+.++|..+..++++..+ .. ++.-.+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~--v~~S~D 199 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQG--MYVTHD 199 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTC--EEEESS
T ss_pred EEEEECCCCCCEEEEEEcCCCe--EEEEcC
Confidence 8899998765666666554 44 555544
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.45 E-value=8.3 Score=30.76 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=70.6
Q ss_pred EEcCCCCeEEEEecC--------------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEc----CCCe
Q 020107 112 EWNPSATSITVGLSD--------------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGS----DDCK 173 (331)
Q Consensus 112 ~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~dg~ 173 (331)
-++++++.|+-.... ..|+..++...+...+ ... . ...|++ .++.|+-.. ....
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l---~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVL---DPD--P--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEE---ECS--C--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEe---ecC--C--ccEEEE-eCCEEEEEeecCCCCce
Confidence 456788887766542 4677777776543222 211 1 225566 445555443 3456
Q ss_pred EEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEec-CCeEEEEEecCCCCCceeeeeecCCceEEEEECCCC
Q 020107 174 FSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSY-DEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPFI 252 (331)
Q Consensus 174 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (331)
|...++.... ...+.. +.. ..++| ++..|+-.+. ...|..-++.... ... +. .+... ..+.|++
T Consensus 131 Iy~~~~dGs~-~~~lt~---~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~--~~~-l~--~~~~~-~~~~P~g 195 (302)
T 3s25_A 131 LYRIRIDGEE-KKKIKN---HYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQS--EAL-FY--DCNCY-KPVVLDD 195 (302)
T ss_dssp EEEEETTSCC-CEEEES---SCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTE--EEE-EE--CSCEE-EEEEEET
T ss_pred EEEEECCCCC-eEEEeC---CCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCC--EEE-Ee--CCCcc-ceeeecC
Confidence 6666666433 333433 222 34566 5666665544 5677777766532 122 11 22222 2355877
Q ss_pred CCeEEEEEecCcEEEEEEcCc
Q 020107 253 PGLVLAACMHNGFAVVKVGGE 273 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ 273 (331)
+.++-+...++.+++.++..
T Consensus 196 -~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 196 -TNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp -TEEEEEEGGGTTEEEEECSS
T ss_pred -CEEEEEEcCCCcEEEEEECC
Confidence 44444443333456666554
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=87.72 E-value=10 Score=30.88 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=69.9
Q ss_pred CCeEEEEcCCccEEEecCCCcccCccEEEEEE--cCCCCeEEEE--ecCCeEEEEEccccceeeeeeeec--ccceeEEE
Q 020107 82 GPFLAQADADGGLLRDITGEKISSSMCLCLEW--NPSATSITVG--LSDGSVSIVSVVESQLEVLQQWKA--HEFELWAT 155 (331)
Q Consensus 82 ~~~l~~~~~dg~iiw~~~~~~~~~~~v~~~~~--~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~--~~~~v~~~ 155 (331)
+.+.|.-..+|.++|...... ..++....- .+.+..++.+ +.||.|..++..++..+....... ...++..
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~--~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~- 96 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPEN--FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL- 96 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGG--SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-
T ss_pred CeEEEEECCCCcEEEEecCCc--cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-
Confidence 334444444555588887651 111111110 0122234444 579999999988774321111110 1111211
Q ss_pred eeCC--------CCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCC----cceEEEEEe---c-CCCCEEEEEecCCe
Q 020107 156 SFDV--------HQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHK----MGVCCIASI---P-SDSNTLLTGSYDEY 219 (331)
Q Consensus 156 ~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~---~-~~~~~l~~~~~d~~ 219 (331)
.=.| ..+..+++|+.+|.+.-.|+++++.+..+....... ....|.... . ..+..++.+..+..
T Consensus 97 ~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~ 176 (339)
T 2be1_A 97 KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFE 176 (339)
T ss_dssp ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEE
T ss_pred CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEE
Confidence 0000 034678999999999999999998877776511100 001111110 0 12356777777777
Q ss_pred EEEEE
Q 020107 220 LRVWD 224 (331)
Q Consensus 220 i~iwd 224 (331)
+.+.+
T Consensus 177 v~~~~ 181 (339)
T 2be1_A 177 LGIHS 181 (339)
T ss_dssp CEECC
T ss_pred EEEEC
Confidence 77766
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=87.62 E-value=11 Score=32.99 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred EEEEEcCCCCeEEEEec-CCeEEEEEcccc------ce-----eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 109 LCLEWNPSATSITVGLS-DGSVSIVSVVES------QL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
..+..+|||+++++++. +.++.++|.+.- +. ....... -.......+|.+ +++...+.--|..|..
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceEEE
Confidence 46788999999887776 899999999851 11 0111222 233456889998 6777777779999999
Q ss_pred EEccC
Q 020107 177 WDIRE 181 (331)
Q Consensus 177 ~d~~~ 181 (331)
|++..
T Consensus 404 Wni~~ 408 (638)
T 3sbq_A 404 WNMEE 408 (638)
T ss_dssp EEHHH
T ss_pred EeccH
Confidence 99975
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.48 E-value=13 Score=31.82 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCC-eEEEEecCCeEEEEEccccc-eeeeeeee---------cccceeEEEeeCCC---CCcEEEEEcC--
Q 020107 107 MCLCLEWNPSAT-SITVGLSDGSVSIVSVVESQ-LEVLQQWK---------AHEFELWATSFDVH---QPHMVYTGSD-- 170 (331)
Q Consensus 107 ~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~---~~~~l~~~~~-- 170 (331)
....|+|.|++. .|+++...|.|++++..... ...+..+. ........++++|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 346788888885 56666778888888654221 11122111 11346788999983 2334333221
Q ss_pred C----------CeEEEEEccCC--------Cceeeeecc-cCCCcceEEEEEecCCCCEEEEEec
Q 020107 171 D----------CKFSGWDIRES--------PFKLAFQNS-KIHKMGVCCIASIPSDSNTLLTGSY 216 (331)
Q Consensus 171 d----------g~i~i~d~~~~--------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~ 216 (331)
+ ..|.-|.+... .....+... .........|.|.| ++.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCC
Confidence 1 13444555421 011122211 11223468899999 8877766554
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.60 E-value=3.6 Score=33.48 Aligned_cols=109 Identities=8% Similarity=0.048 Sum_probs=62.3
Q ss_pred CeEEEEecCCeEEEEEccccceeeeeeeecc-cceeEEEeeC--CCCCcEEEEE-cCCCeEEEEEccCCCceeeeeccc-
Q 020107 118 TSITVGLSDGSVSIVSVVESQLEVLQQWKAH-EFELWATSFD--VHQPHMVYTG-SDDCKFSGWDIRESPFKLAFQNSK- 192 (331)
Q Consensus 118 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~- 192 (331)
..+++++.||.|.-+|.++++. .-.++.. ..++....-. +.++..++.. +.||.|..+|..++.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 4688899999999999988864 3333322 1122221111 1122344443 689999999988775433333200
Q ss_pred CCCcceEEEEEec--------CCCCEEEEEecCCeEEEEEecCCC
Q 020107 193 IHKMGVCCIASIP--------SDSNTLLTGSYDEYLRVWDVRSIS 229 (331)
Q Consensus 193 ~~~~~v~~~~~~~--------~~~~~l~~~~~d~~i~iwd~~~~~ 229 (331)
....++.. .-.| ..+..+++|+.++.+.-.|+++++
T Consensus 89 v~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 89 VSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 01122221 1000 034578999999999999999873
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.40 E-value=17 Score=34.33 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=30.1
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
.+.+++..+ +..++++-+.|+++|+|++.++++.....
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 455666665 66789999999999999999998766543
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.68 E-value=29 Score=32.85 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=29.2
Q ss_pred ccEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107 106 SMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL 139 (331)
Q Consensus 106 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 139 (331)
..+.++...++..++++-+.|+++|+|++.++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 3567777888888999999999999999998865
No 351
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=83.09 E-value=28 Score=31.84 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=33.1
Q ss_pred CcceeEeeecCCCCCcEEEEEeecccCCCCCCCCCcEEEEeccCcccceEEeEee------ecCcEeEEEEcCCCC
Q 020107 10 GNADAVEFCPQDSYHHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKNLELLYRM------DTAGIFDIKWSPVGG 79 (331)
Q Consensus 10 ~~~~~v~~~~~~~~~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 79 (331)
+++..|.+.|.+| +.+.++. ..|.|...+ ........+... ....|.+|++.|.++
T Consensus 23 g~i~~i~~~p~~~--~~~~~~~----------~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~ 84 (737)
T 2cn3_A 23 GFMPGIVFNETEK--DLIYARA----------AIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDP 84 (737)
T ss_dssp SCCCEEEECSSST--TCEEEEC----------SSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSST
T ss_pred ceeeEEEECCCCC--CEEEEEe----------cCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCC
Confidence 3888999999877 5555565 355544443 322233333221 124599999999654
No 352
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=79.78 E-value=37 Score=31.16 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=77.9
Q ss_pred ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec-c-----c---CCCcceEEEEEecCCCCEEEEEecC-
Q 020107 148 HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN-S-----K---IHKMGVCCIASIPSDSNTLLTGSYD- 217 (331)
Q Consensus 148 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-----~---~~~~~v~~~~~~~~~~~~l~~~~~d- 217 (331)
....|.+++++|.+++.++++...|.|...+= .++.-..+.. . . .....+.+|+++|.+.+.++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999977788887776666543331 2221111111 0 0 0234589999998555555554321
Q ss_pred ----CeEEEEEecCCCCCceeeeeec------CCc--eEEEEECCCCCCeEEEEEecCcEEEEEEcCcccceeEEeec--
Q 020107 218 ----EYLRVWDVRSISKPVNETSVCL------GGG--VWRIKHHPFIPGLVLAACMHNGFAVVKVGGEKAEVLETYAK-- 283 (331)
Q Consensus 218 ----~~i~iwd~~~~~~~~~~~~~~~------~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (331)
....||--....+......... .+. ...++++|..++.+++++..+. +|.-.+. ++.-..+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~--l~~S~Dg-G~TW~~~~~~~ 174 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG--LWRSTDR-AQTWSRMNQLP 174 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC--EEEESST-TSSCEECTTSC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc--EEEECCC-CcCccccccCc
Confidence 1244554444334333321111 111 1468899876677777665555 6665543 333222221
Q ss_pred ----CCcceeeeeecCCCC
Q 020107 284 ----HGSLAYGADWQRGRS 298 (331)
Q Consensus 284 ----h~~~v~~~~~~~~~~ 298 (331)
....+..+.+.|..+
T Consensus 175 ~~~~~~~~~~~i~~~p~~~ 193 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNV 193 (763)
T ss_dssp CCSCTTTCEEEEEECSSST
T ss_pred ccCCCccceEEEEECCCCC
Confidence 112467788888754
No 353
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=75.06 E-value=50 Score=30.14 Aligned_cols=199 Identities=12% Similarity=0.110 Sum_probs=105.4
Q ss_pred CcEEEEeccCcccceEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc----------cCccEEEEEE
Q 020107 44 GSISLFNVNAEEKNLELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI----------SSSMCLCLEW 113 (331)
Q Consensus 44 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~----------~~~~v~~~~~ 113 (331)
.-+..||..+.. +..........|.++... + + .|..++.+|...++..+.+. ....|.++..
T Consensus 82 ~Gl~~yd~~~~~--f~~~~~~~~~~i~~i~~~-~----g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 82 NGILVYNYRADR--YEQPETDFPTDVRTMALQ-G----D-TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp TEEEEEETTTTE--ECCCSCCCCSCEEEEEEE-T----T-EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEE
T ss_pred CCeEEEeCCCCE--EECcccCCCceEEEEEec-C----C-cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEE
Confidence 347788876643 221111112347666542 3 3 45556666554666554332 2345788877
Q ss_pred cCCCCeEEEEecCCeEEEEEccccceeeeeeeec----ccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 114 NPSATSITVGLSDGSVSIVSVVESQLEVLQQWKA----HEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 114 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
..++...+ |+.+ -|..++..+++..... ... ....|.++...+ ++..|..|+. +-|..+|..+++......
T Consensus 154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 154 TKDNQIYV-GTYN-GLCRYIPSNGKFEGIP-LPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTEEEEEC-CCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEE-EeCC-CHhhCccCCCceEEec-CCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccC
Confidence 77766544 4554 4777887765432211 111 122477887765 4454444553 468888987654322211
Q ss_pred cccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeeee-------ecCCceEEEEECCCCCCeEEEEEec
Q 020107 190 NSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETSV-------CLGGGVWRIKHHPFIPGLVLAACMH 262 (331)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~ 262 (331)
. ....|.++...+ ++.+. .|+.+ -+.+++..+. .+..... -....|.++....++ .+.+.+ +
T Consensus 229 l---~~~~i~~i~~d~-~g~lW-igT~~-Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWiGT--~ 297 (758)
T 3ott_A 229 F---HNNSIKSLALDG-NGDLL-AGTDN-GLYVYHNDTT--PLQHIIHDSRNIQSLTNNIIWNIFADQEH-NIWLGT--D 297 (758)
T ss_dssp E---EEEEEEEEEECT-TCCEE-EEETT-EEEEECCTTS--CCEEECCCTTCTTSCSCSCEEEEEECTTC-CEEEEE--S
T ss_pred C---CCCeEEEEEEcC-CCCEE-EEeCC-ceeEEecCCC--cEEEEEcCCCCcCcCCcCeEEEEEEcCCC-CEEEEe--C
Confidence 1 244588888776 55544 44444 5778887653 2222111 112358888887775 455444 3
Q ss_pred CcEE
Q 020107 263 NGFA 266 (331)
Q Consensus 263 ~~~~ 266 (331)
+++.
T Consensus 298 ~Gl~ 301 (758)
T 3ott_A 298 YGIS 301 (758)
T ss_dssp SSEE
T ss_pred Cccc
Confidence 4543
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=74.90 E-value=50 Score=30.11 Aligned_cols=247 Identities=9% Similarity=0.078 Sum_probs=127.5
Q ss_pred cEEEEeccCcccceEEeEe----eecCcEeEEEEcCCCCCCCCeEEEEcCCccEEEecCCCcc-----------cCccEE
Q 020107 45 SISLFNVNAEEKNLELLYR----MDTAGIFDIKWSPVGGNAGPFLAQADADGGLLRDITGEKI-----------SSSMCL 109 (331)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~iiw~~~~~~~-----------~~~~v~ 109 (331)
-+..++..+.. +..+.. .....|.++....+ +.+.+ ++.+|...++..+... ....|.
T Consensus 122 Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~----g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 194 (758)
T 3ott_A 122 GLYTYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKD----NQIYV-GTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVN 194 (758)
T ss_dssp EEEEEETTTCC--EEEECHHHHCCSCSCEEEEEECTT----CCEEE-EETTEEEEEETTTTEEEEECCCCCTTCSSCCEE
T ss_pred cceeEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCC----CCEEE-EeCCCHhhCccCCCceEEecCCCccccccceeE
Confidence 56667765543 332210 11245778877666 55444 4455644555443221 123478
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeee
Q 020107 110 CLEWNPSATSITVGLSDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQ 189 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 189 (331)
++...+++..|-+|+. +-+..++..+++......+. ...|.++...+ ++.+. .|+. +-+.+++..+.+......
T Consensus 195 ~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~d~-~g~lW-igT~-~Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 195 SLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLALDG-NGDLL-AGTD-NGLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp EEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEEECT-TCCEE-EEET-TEEEEECCTTSCCEEECC
T ss_pred EEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEEEcC-CCCEE-EEeC-CceeEEecCCCcEEEEEc
Confidence 8887777776666664 45788898776543333332 34588888765 44444 4454 457888887654322111
Q ss_pred cc----cCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee------eecCCceEEEEECCCCCCeEEEE
Q 020107 190 NS----KIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS------VCLGGGVWRIKHHPFIPGLVLAA 259 (331)
Q Consensus 190 ~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~ 259 (331)
.. .-....|.++.... ++. |-.|+..| +.++... ....... ......|.++.-..++ .+.+.
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~-~g~-lWiGT~~G-l~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lWiG- 340 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQ-EHN-IWLGTDYG-ISLSRYN---SALQFIPISQITGTGDGNQFYSLFRDSKG-FYWFG- 340 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECT-TCC-EEEEESSS-EEEECCC---C-CEEEEHHHHSCSCCCCBEEEEEECTTC-CEEEE-
T ss_pred CCCCcCcCCcCeEEEEEEcC-CCC-EEEEeCCc-ccccccC---CceeEEecccCCCCCCCceEEEEEEcCCC-CEEEe-
Confidence 10 01234688888876 554 44455556 5444322 1111100 0113468888877764 44444
Q ss_pred EecCcEEEEEEcCccc--ceeEEeec-------CCcceeeeeecCCCCcccccccCcEEEEeecCCCeEEEEcCCCc
Q 020107 260 CMHNGFAVVKVGGEKA--EVLETYAK-------HGSLAYGADWQRGRSSLEGKRKNSLVATCSFYDRLLRIWMPESD 327 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~--~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d~~i~iW~~~~~ 327 (331)
. .++ ++.+....+ .....+.. ....|.++.-..++ .|-.|. ++-|..++..++
T Consensus 341 t-~~G--l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g----------~lWigt--~~GL~~~~~~~~ 402 (758)
T 3ott_A 341 G-ANG--LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ----------QLWIAT--DGSINRYDYATR 402 (758)
T ss_dssp E-TTE--EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS----------CEEEEE--TTEEEEEETTTT
T ss_pred e-CCc--ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC----------CEEEEe--CCcHhhcCcCCC
Confidence 3 456 444433211 11222221 12347777666665 344444 346777877654
No 355
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.42 E-value=38 Score=27.67 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=100.2
Q ss_pred cEeEEEEcCCCCCCCCeEEEE------------cCCccE-EEecCCCcc--------------cCccEEEEEEcC--CCC
Q 020107 68 GIFDIKWSPVGGNAGPFLAQA------------DADGGL-LRDITGEKI--------------SSSMCLCLEWNP--SAT 118 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~------------~~dg~i-iw~~~~~~~--------------~~~~v~~~~~~~--~~~ 118 (331)
...++...|+ +..++++ ..+|.| ++++.+... .......+.+.+ ++.
T Consensus 51 G~EDi~~~~~----G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 51 GSEDLEILPN----GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp CCCEEEECTT----SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CcceeEEcCC----CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 4556666776 5555554 257777 777653211 112455666654 343
Q ss_pred -eEEEEec---CCeEEEEEcccc--ceeeeeeeecc-cceeEEEeeCCCCCcEEEEEc-----------------CCCeE
Q 020107 119 -SITVGLS---DGSVSIVSVVES--QLEVLQQWKAH-EFELWATSFDVHQPHMVYTGS-----------------DDCKF 174 (331)
Q Consensus 119 -~l~~~~~---dg~i~i~d~~~~--~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i 174 (331)
+|+++.. +.+|.+|+++.. ....+..+.+. -...+.+++.+ ++.+.++.. ..|.|
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 3544432 467778776653 33334444432 23467888887 666666543 12445
Q ss_pred EEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEe-cCCeEEEEEecCCCCCceeeeeecCCceEEEEECC-CC
Q 020107 175 SGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGS-YDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHP-FI 252 (331)
Q Consensus 175 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 252 (331)
.-+|. ++...... .-...+.++|+| +++.|+.+. ..+.|..|++...............+..-.++..+ ++
T Consensus 206 yr~d~--~~~~~~~~----~l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 206 TYYSP--NDVRVVAE----GFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp EEECT--TCCEEEEE----EESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred EEEEC--CeEEEeec----CCcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 55554 33222222 234578999999 887666654 67899999997532221111123456678899998 45
Q ss_pred CCeEEEEE
Q 020107 253 PGLVLAAC 260 (331)
Q Consensus 253 ~~~~~~~~ 260 (331)
.+++++.
T Consensus 279 -~lwva~~ 285 (355)
T 3sre_A 279 -DLWVGCH 285 (355)
T ss_dssp -CEEEEEE
T ss_pred -cEEEEec
Confidence 5555443
No 356
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.97 E-value=59 Score=29.66 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=56.0
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE--------EEecCCCcc-----cCccEEEEEEcCCC-CeEEEEecC-------
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL--------LRDITGEKI-----SSSMCLCLEWNPSA-TSITVGLSD------- 126 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i--------iw~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~~~d------- 126 (331)
.|..|+++|.++ ..+.++...+.+ -|..-.... ....+.+|+++|.. +.++++...
T Consensus 24 ~i~~i~~~p~~~---~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEK---DLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSST---TCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCC---CEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 799999999864 356667766666 454322211 12458999999843 455555421
Q ss_pred CeEEEEEccc-c-ceeeeee-ee--c---ccceeEEEeeCCCCCcEEEEEcCC
Q 020107 127 GSVSIVSVVE-S-QLEVLQQ-WK--A---HEFELWATSFDVHQPHMVYTGSDD 171 (331)
Q Consensus 127 g~i~i~d~~~-~-~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~l~~~~~d 171 (331)
+...||.... + .++.+.. +. . ....+..++++|.+++.++.+...
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 1244555443 2 2222211 11 0 011246789998777777777643
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.26 E-value=74 Score=28.92 Aligned_cols=37 Identities=11% Similarity=0.326 Sum_probs=28.2
Q ss_pred eeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 151 ELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.|.++.+ +..++++-+.|+++|+|+++++++......
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 357899999999999999999987655544
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.12 E-value=13 Score=35.99 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=28.2
Q ss_pred EEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeec
Q 020107 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQN 190 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 190 (331)
.+++..+ +..++++-+.|+++|+|++.+++++.....
T Consensus 241 vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 241 ISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp SCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred EEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3444444 667899999999999999999987666443
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.34 E-value=15 Score=35.50 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.6
Q ss_pred cEEEEeecCCCeEEEEcCCCccc
Q 020107 307 SLVATCSFYDRLLRIWMPESDCL 329 (331)
Q Consensus 307 ~~l~s~~~~d~~i~iW~~~~~~~ 329 (331)
.++++.+ .|+++|+|++.++.+
T Consensus 250 ~~lftL~-~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 250 NVLVMLS-LDYKLKVLDLSTNQC 271 (1139)
T ss_dssp TEEEEEB-TTCEEEEEETTTTEE
T ss_pred cEEEEEe-CCCEEEEEECCCCCe
Confidence 6899999 999999999998853
No 360
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.71 E-value=51 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.0
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107 107 MCLCLEWNPSATSITVGLSDGSVSIVSVVESQL 139 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 139 (331)
.|.++.+ +..++++-+.|..+|+|++++++.
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCce
Confidence 4555555 467999999999999999999865
No 361
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=48.73 E-value=98 Score=24.46 Aligned_cols=102 Identities=8% Similarity=0.074 Sum_probs=55.2
Q ss_pred EEEcCCCCeEEEEe----cCCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCcee
Q 020107 111 LEWNPSATSITVGL----SDGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKL 186 (331)
Q Consensus 111 ~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 186 (331)
..|+++++.|+-.. ....|...++..... ..+..+.. .+++|.+..+..+......|.+.++..+....
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~---~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK---KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCC---EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCe---EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 36778888888765 344566666654332 23332322 34566344444454446788888887654332
Q ss_pred eeecccCCCcceEEEEEecCCCCEEEEEecC--CeEEEEEecC
Q 020107 187 AFQNSKIHKMGVCCIASIPSDSNTLLTGSYD--EYLRVWDVRS 227 (331)
Q Consensus 187 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~ 227 (331)
.+. .... ..+.| ++.+|+-...+ ..|..-++..
T Consensus 182 l~~------~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 182 FYD------CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EEC------SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSS
T ss_pred EeC------CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCC
Confidence 222 1222 23568 66676665543 3555555554
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=48.42 E-value=95 Score=24.20 Aligned_cols=111 Identities=15% Similarity=0.029 Sum_probs=53.8
Q ss_pred CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEec
Q 020107 126 DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIP 205 (331)
Q Consensus 126 dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 205 (331)
||.|..|-........+ -......|..++... .+.++. . ||.|..|-....-....-.. -...|..|+...
T Consensus 41 ~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~ 111 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM--PAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGA 111 (282)
T ss_dssp TTEEEEEECCSSSTTSC--CGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEET
T ss_pred CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcC
Confidence 77777776554211000 001123566666542 234444 4 78888887654322211111 134577777654
Q ss_pred CCCCEEEEEecCCeEEEEEecCCCCCceeeeeecCCceEEEEECCC
Q 020107 206 SDSNTLLTGSYDEYLRVWDVRSISKPVNETSVCLGGGVWRIKHHPF 251 (331)
Q Consensus 206 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 251 (331)
. ..+.-. ||.|..|-.....+.-.. ......|..++....
T Consensus 112 -~--hs~al~-~G~v~~wG~n~~gqlg~~--~~~~~~i~~i~~G~~ 151 (282)
T 3qhy_B 112 -W--ASYALK-DGKVIAWGDDSDGQTTVP--AEAQSGVTALDGGVY 151 (282)
T ss_dssp -T--EEEEEE-TTEEEEEECCTTSTTSCC--GGGGSSEEEEEECSS
T ss_pred -C--EEEEEe-CCeEEEecCCCCCcCCCC--ccCCCCeEEEEcccC
Confidence 2 233333 888888876543222111 223345666665544
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=47.48 E-value=1.5e+02 Score=26.25 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=49.6
Q ss_pred eeEEEeeCCCCCcEE-EEEcCCCeEEEEEccCCCc---------eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeE
Q 020107 151 ELWATSFDVHQPHMV-YTGSDDCKFSGWDIRESPF---------KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYL 220 (331)
Q Consensus 151 ~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 220 (331)
....+..+| +++++ +++--+.++.++|.+.... ...+.....-.-.....+|.+ +++...+.--|..|
T Consensus 324 sPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 345678888 55554 5555788999999984211 111111111355678899999 88666666689999
Q ss_pred EEEEecC
Q 020107 221 RVWDVRS 227 (331)
Q Consensus 221 ~iwd~~~ 227 (331)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999975
No 364
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=44.98 E-value=1.9e+02 Score=26.57 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=80.2
Q ss_pred CccEEEEEEcCCC-CeEEEEecCCeEEEEEccccceeeeee-ee----c----ccceeEEEeeCCCCCcEEEEEcCC---
Q 020107 105 SSMCLCLEWNPSA-TSITVGLSDGSVSIVSVVESQLEVLQQ-WK----A----HEFELWATSFDVHQPHMVYTGSDD--- 171 (331)
Q Consensus 105 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~----~----~~~~v~~~~~~~~~~~~l~~~~~d--- 171 (331)
...|.+|.++|.+ ..++++...|.|...+-....+.++.. +. + ....+.+++++|.+++.++++...
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~ 99 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQ 99 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTT
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccccc
Confidence 3567788888866 456666656655443322223333222 10 0 123588999998655555544321
Q ss_pred --CeEEEEEcc-CCCceeeeecc-cC-----CCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCCCceeee--e---
Q 020107 172 --CKFSGWDIR-ESPFKLAFQNS-KI-----HKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISKPVNETS--V--- 237 (331)
Q Consensus 172 --g~i~i~d~~-~~~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~--- 237 (331)
....||-.. .++.-..+... +. .......++++|.+...++.+..++. +|--....+...... .
T Consensus 100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~--l~~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG--LWRSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC--EEEESSTTSSCEECTTSCCCS
T ss_pred CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc--EEEECCCCcCccccccCcccC
Confidence 123344433 33322222110 00 01112468888855566666665443 333333323222211 0
Q ss_pred ecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcC
Q 020107 238 CLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGG 272 (331)
Q Consensus 238 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
.....+..|+++|..+..++++...++ .++.-.+
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~g-~v~~S~D 211 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAVG-GLWVTWD 211 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESSTT-CEEEESS
T ss_pred CCccceEEEEECCCCCCEEEEEEeCCC-eEEEECC
Confidence 111347789999876566666665553 2555544
No 365
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}
Probab=44.92 E-value=1.8e+02 Score=26.36 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=34.4
Q ss_pred eEEEEECCCCCCeEEEEEe------cCcEEEEEEcCcccceeEEeecCCcceeeeeecCCCCcccccccCcEEEEeecCC
Q 020107 243 VWRIKHHPFIPGLVLAACM------HNGFAVVKVGGEKAEVLETYAKHGSLAYGADWQRGRSSLEGKRKNSLVATCSFYD 316 (331)
Q Consensus 243 v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~~d 316 (331)
+..|+.+|..+..+++++. .++ +|.-.+. ++....+.........+.+.|..+ ..|+.++ .+
T Consensus 92 ~~~IavdP~dp~~vyvag~~~~~~~~g~--v~rS~Dg-G~TW~~~~~p~~~~~~l~~~P~~~--------~~l~a~~-~~ 159 (685)
T 3f6k_A 92 EFGMAIGPENSGKVVLTAEVSGGSRGGR--IFRSSDF-AKNFVQTDLPFHPLTQMMYSPQNS--------DYLLALS-TE 159 (685)
T ss_dssp GGCEEECSTTCCCEEEEECCCTTCSSCE--EEEESST-TSSCEEEECSSCBSSCCEEETTEE--------EEEEEEB-TT
T ss_pred eeEEEECCCCCCEEEEEEeccCCCCCce--EEEECCC-CceeEeccCCCCCceEEEEecCCC--------CEEEEEE-CC
Confidence 4678999976545555543 343 6666654 333333221111123677888765 5555554 44
Q ss_pred CeE
Q 020107 317 RLL 319 (331)
Q Consensus 317 ~~i 319 (331)
+.|
T Consensus 160 ~gl 162 (685)
T 3f6k_A 160 NGL 162 (685)
T ss_dssp CCE
T ss_pred CCE
Confidence 444
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.86 E-value=1.1e+02 Score=27.11 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEEEcCCCCeEEEEecC------------CeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEE
Q 020107 109 LCLEWNPSATSITVGLSD------------GSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT 167 (331)
Q Consensus 109 ~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (331)
-.|.|+|.|.+++.-..+ ..+.+.+..+++...+..-. ...+++.++|+| +++.|+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fsp-Dg~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSP-DQKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECT-TSSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECC-CCCEEEE
Confidence 468899999866554332 24556666666654433322 457899999999 5554443
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.98 E-value=1.6e+02 Score=23.43 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=103.8
Q ss_pred cEEEEEeecccCCCCCCCCCcEEEEeccCcccc------eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE----
Q 020107 25 HVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN------LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL---- 94 (331)
Q Consensus 25 ~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i---- 94 (331)
.++++.+ .+|.|+--.+..-... ...+.-...+.+..+..... .+.++..+..|.+
T Consensus 9 ~~~v~~T----------~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~----~~~ll~~T~~G~~~~~~ 74 (312)
T 1suu_A 9 NIVVMLT----------KKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT----HDYLFMISNEGKLYLIN 74 (312)
T ss_dssp EEEEEEE----------TTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET----TCEEEEEETTSEEEEEE
T ss_pred CEEEEEe----------CCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC----CCEEEEEECCCeEEEEE
Confidence 5677777 7999998877654211 11110012233444444444 4577888888887
Q ss_pred EEecCCCc-------------c-cCccEEEEEEcC---CCCeEEEEecCCeEEEEEccccc-----eeeeeeeeccccee
Q 020107 95 LRDITGEK-------------I-SSSMCLCLEWNP---SATSITVGLSDGSVSIVSVVESQ-----LEVLQQWKAHEFEL 152 (331)
Q Consensus 95 iw~~~~~~-------------~-~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~v 152 (331)
.+++.... . ....|.++...+ +...++..+..|.++...+..-. -.....+.. ...+
T Consensus 75 ~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 75 AYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFV 153 (312)
T ss_dssp GGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCE
T ss_pred HHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEE
Confidence 23332210 0 123444443322 45678888999999988875421 111223333 3344
Q ss_pred EEEeeCCCCCcEEEEEcCCCeEEEEEccCC----C---ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEe
Q 020107 153 WATSFDVHQPHMVYTGSDDCKFSGWDIRES----P---FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDV 225 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~ 225 (331)
..+.... ....++..+.+|.+..+....- + -...+.. . ....|.++...+ ++..+++.+..|..+..++
T Consensus 154 v~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-K-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-C-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-C-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEH
Confidence 4444433 3456777888999988887541 1 1223333 1 244566665554 4567888889999999888
Q ss_pred cC
Q 020107 226 RS 227 (331)
Q Consensus 226 ~~ 227 (331)
..
T Consensus 230 ~e 231 (312)
T 1suu_A 230 SK 231 (312)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.50 E-value=1.6e+02 Score=22.96 Aligned_cols=150 Identities=8% Similarity=-0.091 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCeEEEEEccCCC----ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecCCCC---C--
Q 020107 161 QPHMVYTGSDDCKFSGWDIRESP----FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRSISK---P-- 231 (331)
Q Consensus 161 ~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~-- 231 (331)
+...++..+.+|.++...+..-. -...+.. + -.+.+..+.... ....++..+..|.+..+....... .
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l-k-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL-T-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC-C-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec-C-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Confidence 34688889999999999876532 1222222 1 245566666555 556788888899988887654211 0
Q ss_pred -ceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEcCcc-----cceeEEeecCCcceeeeeecCCCCccccccc
Q 020107 232 -VNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVGGEK-----AEVLETYAKHGSLAYGADWQRGRSSLEGKRK 305 (331)
Q Consensus 232 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 305 (331)
...........|..+...+++ ..++..+..+..+...+.+.. ++-+..+ ...+.+..+......
T Consensus 156 Gv~~i~L~~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~-------- 225 (276)
T 3no0_A 156 GVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEE-------- 225 (276)
T ss_dssp CEECCCCCTTCCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSE--------
T ss_pred CEEEEccCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCC--------
Confidence 000011223445554444433 566666677776666654421 2222233 223444444333222
Q ss_pred CcEEEEeecCCCeEEE--EcCC
Q 020107 306 NSLVATCSFYDRLLRI--WMPE 325 (331)
Q Consensus 306 ~~~l~s~~~~d~~i~i--W~~~ 325 (331)
..++..+ .+|.+.. ++++
T Consensus 226 -~~i~~~t-~~G~~ir~~~~~~ 245 (276)
T 3no0_A 226 -VELLITT-KNGKAFYDKINQK 245 (276)
T ss_dssp -EEEEEEE-TTSCEEEEEEEGG
T ss_pred -CEEEEEc-CCCeEEEeeeCHH
Confidence 3444455 5777766 6654
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=34.09 E-value=1.8e+02 Score=25.77 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=37.2
Q ss_pred EEEeeCCCCCcEEEEEcCC------------CeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEE
Q 020107 153 WATSFDVHQPHMVYTGSDD------------CKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTG 214 (331)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 214 (331)
--|+|+| .+++++.-..+ ..+.+.+..+++....+.. .....++.++|+| +++.|.+.
T Consensus 479 DNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp EEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECT-TSSEEEEE
T ss_pred cceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECC-CCCEEEEE
Confidence 4688988 66665554322 2455566666665444443 2567899999999 77766654
No 370
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=33.47 E-value=1.5e+02 Score=25.52 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=37.0
Q ss_pred cEEEEEcCCCeEEEEEcc-CCC-------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 163 HMVYTGSDDCKFSGWDIR-ESP-------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~-~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
..+..|+.+|.|+-.-+. ... .+..++..+ ...+|..|.+++ +...|++++.++.+++
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~-~~~pI~~m~l~~-~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR-EPTTISAMELST-KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSS-SCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecC-CCCccceEEEcC-CCCEEEEEECCeEEEE
Confidence 357778889887544332 211 122333321 357889999999 8889999988776654
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.46 E-value=2.5e+02 Score=24.80 Aligned_cols=59 Identities=7% Similarity=0.028 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCeEEEEec------------CCeEEEEEccccceeeeeeeecccceeEEEeeCCCCCcEEEE
Q 020107 107 MCLCLEWNPSATSITVGLS------------DGSVSIVSVVESQLEVLQQWKAHEFELWATSFDVHQPHMVYT 167 (331)
Q Consensus 107 ~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 167 (331)
....|.|.++|.+.++... ...+..++..+++...+..- .....++.++|+| +++.|++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSP-D~ktLfV 547 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSP-DQKTLFV 547 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECT-TSSEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECC-CCCEEEE
Confidence 3567889999887664322 12566677766665333211 1245789999999 5554444
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.59 E-value=1.9e+02 Score=23.16 Aligned_cols=177 Identities=7% Similarity=0.001 Sum_probs=97.9
Q ss_pred CCCcEEEEeccCcccc------eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE----EEecCCCcc--------
Q 020107 42 RNGSISLFNVNAEEKN------LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----LRDITGEKI-------- 103 (331)
Q Consensus 42 ~~g~i~vw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i----iw~~~~~~~-------- 103 (331)
.+|.|+--.+...... ...........+..+.-... .+.|+.-+..|.+ ++++.....
T Consensus 11 ~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t----~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~ 86 (327)
T 3uc1_A 11 ETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCST----HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVA 86 (327)
T ss_dssp TTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEET----TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHH
T ss_pred CCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCC----CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHH
Confidence 6888887665432100 11111112334544444444 4577777777877 444443210
Q ss_pred ------cCccEEEE-EEcC--CCCeEEEEecCCeEEEEEccccce-----eeeeeeecccceeEEEeeCCCCCcEEEEEc
Q 020107 104 ------SSSMCLCL-EWNP--SATSITVGLSDGSVSIVSVVESQL-----EVLQQWKAHEFELWATSFDVHQPHMVYTGS 169 (331)
Q Consensus 104 ------~~~~v~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 169 (331)
....|..+ .... +...++..+.+|.++...+..-.. .....++..+. +..+.... ....++..+
T Consensus 87 ~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~-lv~~~~~~-~~d~ill~T 164 (327)
T 3uc1_A 87 NLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDE-LVGAVLCS-AGDDLLLVS 164 (327)
T ss_dssp HHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCC-EEEEEEEC-TTCEEEEEE
T ss_pred HccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCE-EEEEEEec-CCCEEEEEE
Confidence 13445444 3332 467899999999999988765211 11123343333 43443332 345677777
Q ss_pred CCCeEEEEEcc--CCC----c---eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEEEEecC
Q 020107 170 DDCKFSGWDIR--ESP----F---KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRVWDVRS 227 (331)
Q Consensus 170 ~dg~i~i~d~~--~~~----~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 227 (331)
..|.+..+... .-. . ...+.. . ....|.++...+ .+..++..+..|.++.-.+..
T Consensus 165 ~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 165 ANGQSIRFSATDEALRPMGRATSGVQGMRF-N-IDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp TTSEEEEEECCTTTSCCCCTTSBCEESSCC-C-TTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEECcccccCcCCcCCCCeeeecC-C-CCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHH
Confidence 88988877766 211 0 122222 1 245577776665 566888999999999887654
No 373
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=32.01 E-value=2.7e+02 Score=24.60 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=29.7
Q ss_pred CeEEEEcCCccEEEecCCCcc-----cCccEEEEEEcCCCCe-EEEEecCCe
Q 020107 83 PFLAQADADGGLLRDITGEKI-----SSSMCLCLEWNPSATS-ITVGLSDGS 128 (331)
Q Consensus 83 ~~l~~~~~dg~iiw~~~~~~~-----~~~~v~~~~~~~~~~~-l~~~~~dg~ 128 (331)
..|.+-..||..+|.+..... |...+.-..|.-||+. +++...+|+
T Consensus 151 ~~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt 202 (591)
T 2zux_A 151 VLIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGT 202 (591)
T ss_dssp CEEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred cEEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCc
Confidence 356666777777887654321 3445666777778865 777766665
No 374
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.60 E-value=3.1e+02 Score=24.93 Aligned_cols=236 Identities=8% Similarity=-0.027 Sum_probs=114.8
Q ss_pred EeEEE-EcCCCCCCCCeEEEE-cCCcc---E--EEecCCCcccCccEE--------------EEEEcCCCCeEEEEec--
Q 020107 69 IFDIK-WSPVGGNAGPFLAQA-DADGG---L--LRDITGEKISSSMCL--------------CLEWNPSATSITVGLS-- 125 (331)
Q Consensus 69 v~~~~-~~~~~~~~~~~l~~~-~~dg~---i--iw~~~~~~~~~~~v~--------------~~~~~~~~~~l~~~~~-- 125 (331)
...+. ++|+ +++++.+ +..|. . ++|+.+.+.....+. .++|. +.+.++.+..
T Consensus 131 ~~g~~~~~~~----~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~ 205 (711)
T 4hvt_A 131 YRGVSNCFQN----PNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLH 205 (711)
T ss_dssp EEEEEECSSS----TTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCS
T ss_pred EeceeecCCC----CCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCC
Confidence 44555 7888 5655543 33332 2 888888765433222 33776 4444544421
Q ss_pred ---------CCeEEEEEccccceeeeeeeeccccee-EEEeeCCCCCc----EEEEEcC---CCeEEEEEccCCCc-eee
Q 020107 126 ---------DGSVSIVSVVESQLEVLQQWKAHEFEL-WATSFDVHQPH----MVYTGSD---DCKFSGWDIRESPF-KLA 187 (331)
Q Consensus 126 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~l~~~~~---dg~i~i~d~~~~~~-~~~ 187 (331)
...|+.|.+-+...+....+.+....+ .....+++... .+++.+. ...+.+.|...... ...
T Consensus 206 ~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (711)
T 4hvt_A 206 KNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK 285 (711)
T ss_dssp TTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE
T ss_pred CCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE
Confidence 246888887765333334444333333 23334442222 3444332 24566666654222 122
Q ss_pred eecccCCCcceEEEEEecCCCCEEEEE----------ecCCeEEEEEecCCC------CCceeee-eecCCceEEEEECC
Q 020107 188 FQNSKIHKMGVCCIASIPSDSNTLLTG----------SYDEYLRVWDVRSIS------KPVNETS-VCLGGGVWRIKHHP 250 (331)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~iwd~~~~~------~~~~~~~-~~~~~~v~~~~~~~ 250 (331)
+.. + .... +..++ ++.+++.. ...+.|...|+.+.. ......+ ......+..+.|..
T Consensus 286 l~~-~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (711)
T 4hvt_A 286 INM-P-SDAT---LQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK 359 (711)
T ss_dssp CCS-C-TTCE---EEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS
T ss_pred eec-C-Ccce---EeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC
Confidence 222 1 1211 22334 45555532 245679999987641 2222212 23344677889988
Q ss_pred CCCCeEEEEEecCcEEEEEEcCcccc-eeEE-eec-CCcceeeeeecCCCCcccccccCcEEEEeec--CCCeEEEEcCC
Q 020107 251 FIPGLVLAACMHNGFAVVKVGGEKAE-VLET-YAK-HGSLAYGADWQRGRSSLEGKRKNSLVATCSF--YDRLLRIWMPE 325 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~--~d~~i~iW~~~ 325 (331)
+ .++++...++.-++..+....+. .... +.- ..+.+......+++. .++++.++ .-..+..+|+.
T Consensus 360 ~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~--------~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 360 D--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEE--------EALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp S--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCS--------CEEEEEECSSSCCEEEEECTT
T ss_pred C--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCC--------EEEEEEecCCCCCEEEEEeCC
Confidence 6 66655554443333333222122 1222 221 124566666666664 56665542 23667777765
No 375
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=27.99 E-value=1.9e+02 Score=25.20 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=38.6
Q ss_pred EEEEEEcCCC--CeEEEEecCCeEEEEEccccce--eeeeeee--cccceeE-EEeeCCCCCcEEEEEcCCCeEEE
Q 020107 108 CLCLEWNPSA--TSITVGLSDGSVSIVSVVESQL--EVLQQWK--AHEFELW-ATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 108 v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~--~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
.++++....+ ..++.|+.+|.|.-..+..... ..+..+. ....+|. .+.+++ +...|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~-~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI-NQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT-TSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc-CCCeEEEEecccccee
Confidence 3444443333 3478888899887665543211 1122222 2245674 888887 6678888876655444
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.40 E-value=3.3e+02 Score=24.14 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=35.9
Q ss_pred ceEEEEECCCCCCeEEEEEec----------CcEEEEEEcCcccceeEEeecC-CcceeeeeecCCCC
Q 020107 242 GVWRIKHHPFIPGLVLAACMH----------NGFAVVKVGGEKAEVLETYAKH-GSLAYGADWQRGRS 298 (331)
Q Consensus 242 ~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~ 298 (331)
....|.|.+++ .+++++-.. +.-.+|.+....+++...+.+. ...+++++|+||+.
T Consensus 477 sPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCC
Confidence 45779999986 666644321 1114677766545655555443 45789999999985
No 377
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.96 E-value=2.9e+02 Score=24.97 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=36.8
Q ss_pred cEEEEEcCCCeEE-EEEccCCC-------ceeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 163 HMVYTGSDDCKFS-GWDIRESP-------FKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 163 ~~l~~~~~dg~i~-i~d~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
..++.|+.+|.|+ +.-..... .+..++..+ ...+|..|.+++ +...|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~-~~~pI~~L~ld~-~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR-EPTTISAMELST-KQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSS-SCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecC-CCceeeeEEEcC-CCCEEEEEECCEEEEE
Confidence 3577888899875 33222211 112222222 467889999999 8889999988876665
No 378
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.41 E-value=2.9e+02 Score=24.47 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=35.2
Q ss_pred eEEEEecCCeEEEEEccccc----eeeeeeee--cccceeEEEeeCCCCCcEEEEEcCCCeEEEE
Q 020107 119 SITVGLSDGSVSIVSVVESQ----LEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDDCKFSGW 177 (331)
Q Consensus 119 ~l~~~~~dg~i~i~d~~~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~ 177 (331)
.++.|+.+|.|.-.-+.... ...+..+. ....+|..+.+++ +...|+.++.++.+++-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~-~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDA-ERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEET-TTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcC-CCCEEEEEecceEEEcc
Confidence 47788888887644433211 11122222 2456788999987 66778888877665553
No 379
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.24 E-value=3e+02 Score=22.00 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=78.6
Q ss_pred CcEEEEEeecccCCCCCCCCCcEEEEeccCcccc----eEEeEeeecCcEeEEEEcCCCCCCCCeEEEEcCCccE----E
Q 020107 24 HHVLAASTYTLQEGDKPSRNGSISLFNVNAEEKN----LELLYRMDTAGIFDIKWSPVGGNAGPFLAQADADGGL----L 95 (331)
Q Consensus 24 ~~~la~g~~~~~~~~~~~~~g~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i----i 95 (331)
..+++..+ .+|.|+--.+...... ...+.-...+.+..+..... .+.|+..+..|.+ +
T Consensus 109 e~~~v~~T----------~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~----~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 109 APYLVLAT----------RNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSA----GDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp SSEEEEEE----------TTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECT----TCEEEEEETTSEEEEEEC
T ss_pred CCEEEEEc----------CCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecC----CCEEEEEECCCeEEEEEC
Confidence 46777777 7999999887653311 11111112344555555545 5578888888888 3
Q ss_pred E--ecCCCcc-----------cCccEEEEEEcCCCCeEEEEecCCeEEEEEccccce-----eeee--eeecccceeEEE
Q 020107 96 R--DITGEKI-----------SSSMCLCLEWNPSATSITVGLSDGSVSIVSVVESQL-----EVLQ--QWKAHEFELWAT 155 (331)
Q Consensus 96 w--~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~--~~~~~~~~v~~~ 155 (331)
. ++..... ....|.++...+.+..++..+..|.++.-.+..-.. .-+. .+......+-.+
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~ 254 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 254 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEE
T ss_pred cccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEE
Confidence 3 3322111 134466666656667889999999998887654111 0111 122212234343
Q ss_pred eeCCCCCcEEEEEcCCCeEEEEEccC
Q 020107 156 SFDVHQPHMVYTGSDDCKFSGWDIRE 181 (331)
Q Consensus 156 ~~~~~~~~~l~~~~~dg~i~i~d~~~ 181 (331)
.... +...++..+.+|.+.-++...
T Consensus 255 ~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 255 LIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EEeC-CCccEEEEcCCCeEEEEehhh
Confidence 3332 334555666677777776653
No 380
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=22.19 E-value=2e+02 Score=20.41 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=20.7
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEEccccce
Q 020107 110 CLEWNPSATSITVGLSDGSVSIVSVVESQL 139 (331)
Q Consensus 110 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 139 (331)
-+.|.|++.+.+.+...|...=.|+..+.+
T Consensus 114 p~eF~p~~~w~a~~~esG~f~dvDLse~eW 143 (164)
T 1zso_A 114 LIDFFPSNNFIVEDTKGKLYYDVNLSDQNW 143 (164)
T ss_dssp EEEECCCSCEEEEETTSCEEEEECCTTSCE
T ss_pred eEEEecCCcEEEEECCCCcEEeeecCCCce
Confidence 467899999988887777433466665544
No 381
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.93 E-value=2.8e+02 Score=21.47 Aligned_cols=174 Identities=13% Similarity=0.011 Sum_probs=89.1
Q ss_pred cEeEEEEcCCCCCCCCeEEEEcCCccE-EEecCCCc------ccCccEEEEEEcCCCCeEEEEecCCeEEEEEccc-cce
Q 020107 68 GIFDIKWSPVGGNAGPFLAQADADGGL-LRDITGEK------ISSSMCLCLEWNPSATSITVGLSDGSVSIVSVVE-SQL 139 (331)
Q Consensus 68 ~v~~~~~~~~~~~~~~~l~~~~~dg~i-iw~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~ 139 (331)
.|..++-... ..+.-. ||.+ .|-..... .....|..++..... .++. . ||.|..|-... +++
T Consensus 25 ~i~~ia~G~~------h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 25 GVDAIAGGYF------HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SCCEEEECSS------EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTT
T ss_pred CCcEEEeCCC------eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCC
Confidence 4666655443 222223 6777 56443311 112345566554322 2333 4 89999998664 221
Q ss_pred eeeeeeecccceeEEEeeCCCCCcEEEEEcCCCeEEEEEccCCCceeeeecccCCCcceEEEEEecCCCCEEEEEecCCe
Q 020107 140 EVLQQWKAHEFELWATSFDVHQPHMVYTGSDDCKFSGWDIRESPFKLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEY 219 (331)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 219 (331)
-... .-...|..++... ...+.-. +|.|..|-.........-.. ....|..++... . ..++ -. ||.
T Consensus 95 g~P~---~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~---~~~~i~~i~~G~-~-~~~~-l~-~G~ 160 (282)
T 3qhy_B 95 TVPA---EARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAE---AQSGVTALDGGV-Y-TALA-VK-NGG 160 (282)
T ss_dssp CCCG---GGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGG---GGSSEEEEEECS-S-EEEE-EE-TTE
T ss_pred CCCc---ccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCcc---CCCCeEEEEccc-C-EEEE-EE-CCE
Confidence 1000 1123577777653 3333344 99999998765332221111 245677777653 2 2333 33 799
Q ss_pred EEEEEecCCCCCceeeeeecCCceEEEEECCCCCCeEEEEEecCcEEEEEEc
Q 020107 220 LRVWDVRSISKPVNETSVCLGGGVWRIKHHPFIPGLVLAACMHNGFAVVKVG 271 (331)
Q Consensus 220 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
|..|-.....+.-.. ......|..++.... ..++. .++.+..|=..
T Consensus 161 v~~wG~n~~gqlg~p--~~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 161 VIAWGDNYFGQTTVP--AEAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp EEEEECCTTSTTSCC--GGGGSSEEEEEECSS--EEEEE--ETTEEEEEECC
T ss_pred EEEecCCCCCCCCCc--eecCCCeEEEEecCC--EEEEE--ECCeEEEEECC
Confidence 999977653222111 222456778877665 33333 57775555443
No 382
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.02 E-value=3e+02 Score=24.35 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=36.6
Q ss_pred cEEEEEcCCCeEEEEEccCCC----c--eeeeecccCCCcceEEEEEecCCCCEEEEEecCCeEEE
Q 020107 163 HMVYTGSDDCKFSGWDIRESP----F--KLAFQNSKIHKMGVCCIASIPSDSNTLLTGSYDEYLRV 222 (331)
Q Consensus 163 ~~l~~~~~dg~i~i~d~~~~~----~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 222 (331)
..+..|+.+|.|+-.-+.... . +..+..+ ....+|..+.+++ +...|++++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~-~~~~pi~~L~ls~-~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPF-RRAAAIQTMSLDA-ERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCC-SSCCCCCEEEEET-TTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeecc-CCCCceeeEEEcC-CCCEEEEEecceEEEc
Confidence 467788889987644333211 1 1112221 1456789999999 7888888887776665
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.96 E-value=3e+02 Score=23.72 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=35.3
Q ss_pred eEEEEecCCeEEEEEccccc------eeeeeeee--cccceeEEEeeCCCCCcEEEEEcCCCeEEE
Q 020107 119 SITVGLSDGSVSIVSVVESQ------LEVLQQWK--AHEFELWATSFDVHQPHMVYTGSDDCKFSG 176 (331)
Q Consensus 119 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 176 (331)
.++.|+.+|.|.-.-+.... ...+.++. ....+|..+.+++ +...|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~-~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELST-KQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEET-TTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcC-CCCEEEEEECCeEEEE
Confidence 37888999987555443211 11122232 2346889999998 6788888887776654
No 384
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.95 E-value=1.6e+02 Score=26.54 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=34.1
Q ss_pred CeEEEEcCCccE--EEecCCCc---------------ccCccEEEEEEcCCCCeEEEEecCCeEEE
Q 020107 83 PFLAQADADGGL--LRDITGEK---------------ISSSMCLCLEWNPSATSITVGLSDGSVSI 131 (331)
Q Consensus 83 ~~l~~~~~dg~i--iw~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 131 (331)
..+..|+.+|.+ +....... ....+|..|.++++.+.|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 467889999998 22111110 13567888999999999999999876665
Done!