Query 020108
Match_columns 331
No_of_seqs 117 out of 1103
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00211 ribonucleoside-diphos 100.0 1.3E-73 2.8E-78 546.9 35.2 292 16-309 2-294 (330)
2 PLN02492 ribonucleoside-diphos 100.0 2.1E-71 4.5E-76 530.6 35.1 282 26-309 1-283 (324)
3 KOG1567 Ribonucleotide reducta 100.0 1.2E-70 2.5E-75 495.0 22.9 283 19-303 18-301 (344)
4 PRK07209 ribonucleotide-diphos 100.0 3.3E-67 7.2E-72 508.8 35.5 280 20-303 33-336 (369)
5 COG0208 NrdF Ribonucleotide re 100.0 6.3E-67 1.4E-71 497.7 33.9 287 23-312 13-317 (348)
6 PF00268 Ribonuc_red_sm: Ribon 100.0 9.2E-67 2E-71 489.8 33.3 275 27-303 2-278 (281)
7 PRK09101 nrdB ribonucleotide-d 100.0 8.8E-66 1.9E-70 499.7 35.4 278 22-303 12-332 (376)
8 PRK09614 nrdF ribonucleotide-d 100.0 1.4E-65 3E-70 490.8 35.1 274 27-304 2-285 (324)
9 cd01049 RNRR2 Ribonucleotide R 100.0 2E-64 4.3E-69 475.2 33.8 270 36-306 1-282 (288)
10 PRK13966 nrdF2 ribonucleotide- 100.0 2.4E-63 5.2E-68 474.0 33.5 279 27-311 6-293 (324)
11 PRK12759 bifunctional gluaredo 100.0 1.4E-62 2.9E-67 482.8 34.4 282 15-304 80-372 (410)
12 PRK13965 ribonucleotide-diphos 100.0 5.3E-61 1.1E-65 459.8 32.3 273 34-311 23-304 (335)
13 PRK13967 nrdF1 ribonucleotide- 100.0 1.2E-59 2.7E-64 448.3 33.1 274 32-310 8-290 (322)
14 cd07911 RNRR2_Rv0233_like Ribo 100.0 3.5E-50 7.7E-55 377.2 31.6 249 46-295 9-269 (280)
15 PRK08326 ribonucleotide-diphos 100.0 7.3E-50 1.6E-54 379.7 31.2 244 47-296 28-290 (311)
16 PF11583 AurF: P-aminobenzoate 98.6 7.6E-06 1.6E-10 77.8 21.8 178 56-241 47-233 (304)
17 cd01057 AAMH_A Aromatic and Al 97.9 0.0073 1.6E-07 60.8 24.1 221 71-295 67-301 (465)
18 PF02332 Phenol_Hydrox: Methan 97.5 0.013 2.7E-07 53.9 18.5 163 74-240 66-232 (233)
19 cd01050 Acyl_ACP_Desat Acyl AC 97.4 0.014 3.1E-07 55.4 18.1 169 53-240 23-210 (297)
20 cd00657 Ferritin_like Ferritin 97.4 0.0057 1.2E-07 48.2 13.2 111 104-231 19-129 (130)
21 TIGR02156 PA_CoA_Oxy1 phenylac 97.3 0.11 2.4E-06 49.1 22.6 201 75-294 17-234 (289)
22 PF05138 PaaA_PaaC: Phenylacet 97.3 0.17 3.6E-06 47.4 24.5 207 72-295 7-226 (263)
23 PRK13778 paaA phenylacetate-Co 97.3 0.14 3.1E-06 48.9 22.5 201 75-294 35-252 (314)
24 cd01058 AAMH_B Aromatic and Al 97.3 0.087 1.9E-06 50.3 21.2 166 70-238 88-257 (304)
25 PF11266 DUF3066: Protein of u 96.7 0.35 7.6E-06 42.4 22.6 196 76-294 4-207 (219)
26 PRK14983 aldehyde decarbonylas 96.2 0.23 4.9E-06 44.0 13.8 196 76-294 14-217 (231)
27 PF03405 FA_desaturase_2: Fatt 96.0 0.2 4.3E-06 48.3 13.7 165 55-240 27-216 (330)
28 PRK13654 magnesium-protoporphy 95.6 0.29 6.4E-06 46.7 13.2 197 71-289 72-281 (355)
29 CHL00185 ycf59 magnesium-proto 95.6 0.54 1.2E-05 44.8 14.7 198 71-290 68-278 (351)
30 TIGR02029 AcsF magnesium-proto 95.2 1.2 2.5E-05 42.5 15.5 198 71-290 62-272 (337)
31 cd01047 ACSF Aerobic Cyclase S 94.5 1.3 2.9E-05 41.8 13.9 198 71-290 52-262 (323)
32 PF04305 DUF455: Protein of un 94.5 1.3 2.8E-05 41.2 13.8 105 118-239 104-212 (253)
33 PLN02508 magnesium-protoporphy 94.2 0.95 2.1E-05 43.3 12.4 197 71-289 68-277 (357)
34 PLN00179 acyl- [acyl-carrier p 93.5 1.3 2.7E-05 43.4 12.1 114 114-240 157-273 (390)
35 COG1633 Uncharacterized conser 93.0 6 0.00013 34.8 14.6 142 85-236 27-170 (176)
36 COG3396 Uncharacterized conser 92.7 8.5 0.00018 35.9 23.5 202 74-295 11-229 (265)
37 cd01047 ACSF Aerobic Cyclase S 92.7 0.54 1.2E-05 44.4 8.0 44 192-235 76-121 (323)
38 PRK13654 magnesium-protoporphy 92.6 0.58 1.3E-05 44.8 8.2 44 192-235 96-141 (355)
39 TIGR02029 AcsF magnesium-proto 92.5 0.68 1.5E-05 44.0 8.4 44 192-235 86-131 (337)
40 cd01041 Rubrerythrin Rubreryth 91.8 3.6 7.8E-05 34.0 11.3 105 104-233 25-131 (134)
41 CHL00185 ycf59 magnesium-proto 91.7 0.87 1.9E-05 43.5 8.1 44 192-235 92-137 (351)
42 PLN02508 magnesium-protoporphy 89.7 0.94 2E-05 43.3 6.5 44 192-235 92-137 (357)
43 cd01044 Ferritin_CCC1_N Ferrit 89.3 11 0.00023 30.8 14.7 41 103-143 18-58 (125)
44 cd01045 Ferritin_like_AB Uncha 88.2 12 0.00026 30.0 15.8 37 104-140 19-55 (139)
45 cd07908 Mn_catalase_like Manga 86.9 16 0.00034 30.8 11.9 42 103-144 38-79 (154)
46 TIGR02158 PA_CoA_Oxy3 phenylac 86.7 26 0.00056 32.3 21.7 175 105-295 15-200 (237)
47 PF02915 Rubrerythrin: Rubrery 85.2 4.3 9.3E-05 32.7 7.3 112 105-231 20-136 (137)
48 cd01051 Mn_catalase Manganese 81.9 17 0.00037 31.2 9.8 105 110-235 51-155 (156)
49 cd07908 Mn_catalase_like Manga 73.4 14 0.0003 31.2 6.8 61 200-260 39-118 (154)
50 PF10118 Metal_hydrol: Predict 71.1 88 0.0019 29.0 17.8 157 71-237 17-175 (253)
51 PF03405 FA_desaturase_2: Fatt 70.8 33 0.00071 33.2 9.3 42 104-145 176-218 (330)
52 PF08671 SinI: Anti-repressor 68.0 3.6 7.9E-05 25.3 1.5 27 256-282 3-29 (30)
53 cd01050 Acyl_ACP_Desat Acyl AC 67.2 36 0.00079 32.4 8.8 41 105-145 169-212 (297)
54 PLN00179 acyl- [acyl-carrier p 65.6 32 0.0007 33.8 8.1 43 103-145 232-275 (390)
55 TIGR03225 benzo_boxB benzoyl-C 63.8 1.6E+02 0.0035 29.2 13.5 153 70-236 95-254 (471)
56 PF14518 Haem_oxygenas_2: Iron 62.4 27 0.00058 27.2 6.0 77 126-205 16-92 (106)
57 cd01051 Mn_catalase Manganese 60.9 75 0.0016 27.2 8.9 36 104-139 120-155 (156)
58 PF00268 Ribonuc_red_sm: Ribon 53.2 1.1E+02 0.0025 28.4 9.5 75 157-236 37-113 (281)
59 PF13668 Ferritin_2: Ferritin- 52.1 1.3E+02 0.0028 24.5 13.0 124 86-232 5-135 (137)
60 PF02915 Rubrerythrin: Rubrery 45.0 1.3E+02 0.0029 23.7 7.7 32 104-135 105-136 (137)
61 PF06945 DUF1289: Protein of u 44.9 24 0.00051 24.4 2.6 22 67-88 25-46 (51)
62 cd00907 Bacterioferritin Bacte 42.1 1.4E+02 0.003 24.7 7.5 58 203-260 32-98 (153)
63 cd00657 Ferritin_like Ferritin 42.1 1.4E+02 0.0031 22.3 7.2 23 110-132 104-126 (130)
64 COG1592 Rubrerythrin [Energy p 41.7 2.4E+02 0.0052 24.6 13.3 108 96-236 19-130 (166)
65 PRK09614 nrdF ribonucleotide-d 40.6 1.2E+02 0.0027 28.9 7.8 77 157-237 40-117 (324)
66 PRK15022 ferritin-like protein 39.2 1.8E+02 0.0038 25.3 7.8 58 200-261 30-100 (167)
67 cd01046 Rubrerythrin_like rubr 38.9 2.1E+02 0.0045 23.1 14.4 96 104-233 25-120 (123)
68 cd01055 Nonheme_Ferritin nonhe 35.1 2.6E+02 0.0057 23.1 9.8 89 173-262 1-99 (156)
69 cd00907 Bacterioferritin Bacte 34.4 2.6E+02 0.0057 22.9 14.9 110 107-236 32-141 (153)
70 cd01046 Rubrerythrin_like rubr 34.3 2.5E+02 0.0054 22.7 7.9 52 201-257 26-77 (123)
71 cd01041 Rubrerythrin Rubreryth 34.2 1.3E+02 0.0028 24.5 6.0 55 202-256 27-86 (134)
72 COG1528 Ftn Ferritin-like prot 34.1 2.6E+02 0.0057 24.4 7.9 53 204-259 33-98 (167)
73 PRK10304 ferritin; Provisional 34.1 1.9E+02 0.0041 24.9 7.2 60 200-260 30-99 (165)
74 PRK13967 nrdF1 ribonucleotide- 33.5 2.4E+02 0.0053 27.0 8.6 76 157-237 40-117 (322)
75 PF05067 Mn_catalase: Manganes 32.7 1.5E+02 0.0033 28.1 6.7 72 52-140 122-195 (283)
76 cd01049 RNRR2 Ribonucleotide R 32.5 4E+02 0.0088 24.6 11.9 60 176-238 47-107 (288)
77 PF09959 DUF2193: Uncharacteri 32.4 1.3E+02 0.0029 29.9 6.4 78 185-264 124-215 (499)
78 PF12165 DUF3594: Domain of un 32.4 72 0.0016 26.5 3.9 36 126-161 86-126 (137)
79 PF11251 DUF3050: Protein of u 31.9 4.1E+02 0.0089 24.4 12.4 169 85-258 24-228 (232)
80 PF03810 IBN_N: Importin-beta 31.2 47 0.001 23.9 2.6 33 49-87 39-71 (77)
81 PF12902 Ferritin-like: Ferrit 29.3 99 0.0021 28.2 4.8 39 198-237 19-57 (227)
82 PF13668 Ferritin_2: Ferritin- 28.8 3.1E+02 0.0068 22.1 7.9 33 104-136 103-135 (137)
83 PF11678 DUF3274: Protein of u 28.6 1.1E+02 0.0025 28.9 5.1 88 5-92 177-278 (285)
84 PRK10635 bacterioferritin; Pro 25.6 4.2E+02 0.0091 22.6 11.9 110 107-236 33-142 (158)
85 PF03070 TENA_THI-4: TENA/THI- 24.9 4.5E+02 0.0098 22.6 21.8 150 105-263 51-208 (210)
86 cd01044 Ferritin_CCC1_N Ferrit 23.1 1.9E+02 0.004 23.3 5.0 39 201-239 20-58 (125)
87 cd00904 Ferritin Ferritin iron 22.9 4.6E+02 0.0099 22.1 7.6 52 206-260 35-100 (160)
88 PRK12759 bifunctional gluaredo 22.7 7.6E+02 0.016 24.5 12.7 74 67-140 220-297 (410)
89 COG3687 Predicted metal-depend 22.5 6.5E+02 0.014 23.6 15.5 125 104-238 61-188 (280)
90 cd07355 HN_L-delphilin-R2_like 22.0 2.4E+02 0.0051 21.5 4.7 40 74-118 15-57 (80)
91 PF02972 Phycoerythr_ab: Phyco 21.0 37 0.0008 24.0 0.3 18 313-330 8-25 (57)
No 1
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=1.3e-73 Score=546.85 Aligned_cols=292 Identities=65% Similarity=1.132 Sum_probs=281.0
Q ss_pred hhcccccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 020108 16 EQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDG 95 (331)
Q Consensus 16 ~~~~~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~ 95 (331)
|+.+++.|++|+||+||++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||+++++++++|+.+|+
T Consensus 2 ~~~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~ 81 (330)
T PTZ00211 2 KEAMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDG 81 (330)
T ss_pred chhhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHH
Q 020108 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS 175 (331)
Q Consensus 96 ~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~ 175 (331)
+|++++++.+++.++.||+++++++|+++|+||+++||+++++++.|+.+++++|+++.++|.+++|++|+.+++++.++
T Consensus 82 ~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~ 161 (330)
T PTZ00211 82 IVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNS 161 (330)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 020108 176 FAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE 255 (331)
Q Consensus 176 ~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E 255 (331)
+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++++++++.+++.+||++|
T Consensus 162 ~~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E 241 (330)
T PTZ00211 162 FAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIE 241 (330)
T ss_pred HHHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCC
Q 020108 256 TQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGL 309 (331)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~ 309 (331)
.+|+++++|++++||+.+++++||+|+||+||++||++++|++ .||+ -++.+
T Consensus 242 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~--~nP~~w~~~~ 294 (330)
T PTZ00211 242 REFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNS--KNPFDWMDMI 294 (330)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCC--CCCchHHHhc
Confidence 9999999999999999999999999999999999999999975 4776 34444
No 2
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=2.1e-71 Score=530.57 Aligned_cols=282 Identities=76% Similarity=1.276 Sum_probs=272.1
Q ss_pred ccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 020108 26 EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (331)
Q Consensus 26 ~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l 105 (331)
|+||.+|++|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||+++++++++|+++|++|++++.+.+
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~ 80 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARF 80 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 020108 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (331)
Q Consensus 106 ~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (331)
++.++.||+++++++|+++|+||+++||+++++++.||++++++|+++.++|.+++|++|+.+++++.++++++++++++
T Consensus 81 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~ 160 (324)
T PLN02492 81 MKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFAC 160 (324)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999988899999999999
Q ss_pred hHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 020108 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265 (331)
Q Consensus 186 lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~~~ 265 (331)
+||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++++++.+++++++++||++|.+|+++++|.
T Consensus 161 lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~~~~~~~~ 240 (324)
T PLN02492 161 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240 (324)
T ss_pred hhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCC
Q 020108 266 ALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGL 309 (331)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~ 309 (331)
+++||+.+.+++||+|+||+||++||++++|++ .||+ -++.+
T Consensus 241 ~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f~~--~nP~~w~~~~ 283 (324)
T PLN02492 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNV--VNPFDWMELI 283 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcCCC--CCCchHHHhc
Confidence 999999999999999999999999999999975 5776 34444
No 3
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-70 Score=495.02 Aligned_cols=283 Identities=67% Similarity=1.137 Sum_probs=276.5
Q ss_pred ccccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 020108 19 EQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVL 98 (331)
Q Consensus 19 ~~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~ 98 (331)
+++..+++++|.+++.|++++|++|+++|+.|||+++.||+++|||+++|..||.+|++.||..+.++|++++.+|++|.
T Consensus 18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGivn 97 (344)
T KOG1567|consen 18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGIVN 97 (344)
T ss_pred ccccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccchh
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchH-HHH
Q 020108 99 ENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-SFA 177 (331)
Q Consensus 99 ~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~-~~~ 177 (331)
+++...+...++.||+|+||++|+++||||++.||.++++++.||.||+.+|+++.+.|.+++|++|..+|+.+.. +++
T Consensus 98 enl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s~fa 177 (344)
T KOG1567|consen 98 ENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDSLFA 177 (344)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997654 599
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 020108 178 ERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQ 257 (331)
Q Consensus 178 ~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~ 257 (331)
+++|+|+++|||+|.|+|++++||.++|+|||++-.+++|+|||++|+.|+|.++.+|+++|+++.|++++.+||++|.+
T Consensus 178 eRlvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IEqe 257 (344)
T KOG1567|consen 178 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIEQE 257 (344)
T ss_pred HHHHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCc
Q 020108 258 FVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKG 303 (331)
Q Consensus 258 ~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p 303 (331)
|...++|...+|||.+.|.+||+|+||++|..||+++.|++ .||
T Consensus 258 f~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~--~NP 301 (344)
T KOG1567|consen 258 FLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNA--ENP 301 (344)
T ss_pred HHHhccchhhhccCHHHHHHHHHHHHHHHHHHhCccceecC--CCc
Confidence 99999999999999999999999999999999999999985 555
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=3.3e-67 Score=508.82 Aligned_cols=280 Identities=26% Similarity=0.516 Sum_probs=261.1
Q ss_pred cccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHh---cCCHHHHHHHHHHHHHHHHHHHH
Q 020108 20 QEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE---RLLDSEKHFISHVLAFFAASDGI 96 (331)
Q Consensus 20 ~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~---~L~~~Er~~~~~~la~l~~~D~~ 96 (331)
.....+++|++|+++..+++|++|||+|++|+++.++||.|+||||++|++||+ +||+.||++++++|++|+.+|++
T Consensus 33 ~~~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~ 112 (369)
T PRK07209 33 RVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSL 112 (369)
T ss_pred cccccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344568899999888889999999999999999999999999999999999997 49999999999999999999999
Q ss_pred HHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc----
Q 020108 97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS---- 172 (331)
Q Consensus 97 v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~---- 172 (331)
|++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.++++ +|+++.++|.+++|++|+.++++.
T Consensus 113 v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e---~f~~~~~~p~l~~K~~~i~~~~~~~~~~ 189 (369)
T PRK07209 113 VANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGE---IFNMYHEVPSIRAKDEFLIPFTRSLTDP 189 (369)
T ss_pred HHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHhcccc
Confidence 9999988899999999999999999999999999999999999887766 999999999999999999998853
Q ss_pred ---------hHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--
Q 020108 173 ---------SDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-- 240 (331)
Q Consensus 173 ---------~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-- 240 (331)
+.++++++|+++ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~ 269 (369)
T PRK07209 190 NFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHL 269 (369)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 345899999985 58999999999999999999999999999999999999999999999999986654
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCc
Q 020108 241 -----WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKG 303 (331)
Q Consensus 241 -----~~~i~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p 303 (331)
.++|++++++||++|.+|++++++.+++|||.+++++||+|+||+||.+||++++|+ ...||
T Consensus 270 ~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~-~~~nP 336 (369)
T PRK07209 270 WTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYP-GTENP 336 (369)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCc
Confidence 468999999999999999999999899999999999999999999999999999995 23576
No 5
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.3e-67 Score=497.68 Aligned_cols=287 Identities=29% Similarity=0.458 Sum_probs=258.8
Q ss_pred ccCccccccC-CCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020108 23 EDQEPILMEQ-NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENL 101 (331)
Q Consensus 23 ~~~~~ll~~~-~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l 101 (331)
.+.+.++.|+ .+..+++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||+++.++|++|+++|++|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~ 92 (348)
T COG0208 13 LEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNG 92 (348)
T ss_pred ccccccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3344455555 466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHhhcHHHHHHHHHHHHHhhc------h-
Q 020108 102 AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF-NAIENIPCVAQKAKWALDWIHS------S- 173 (331)
Q Consensus 102 ~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f-~~~~~~p~l~~k~~~i~~~~~~------~- 173 (331)
.+.+++.++.||+++++++|++||+||++|||+|++|++.++++ .++| +|+.++|.+++|++++...|++ +
T Consensus 93 ~~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~-~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~ 171 (348)
T COG0208 93 VPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDE-DEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDP 171 (348)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh-HHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999765544 4455 7887999999999999998872 1
Q ss_pred --HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHH
Q 020108 174 --DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKV 244 (331)
Q Consensus 174 --~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i 244 (331)
..+.+++++.+++||++|||||+++++|++||+|||++++|++|+|||++|+.|++.+++.++++.+ ++.+
T Consensus 172 ~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~ 251 (348)
T COG0208 172 LEEFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEI 251 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHH
Confidence 2345555555899999999999999999999999999999999999999999999999999998754 4678
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCccccCCCCcc
Q 020108 245 HHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGIARAGLFFP 312 (331)
Q Consensus 245 ~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~~~~~~~~~ 312 (331)
.+++.+||++|++|+.++++ +++||+.+.+++||+|+||+||++||++++|++.. ||+..++.+.+
T Consensus 252 ~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~-NP~~~~~~~~~ 317 (348)
T COG0208 252 YDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEE-NPIPWIELSLS 317 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CchHHHHhhcc
Confidence 99999999999999999998 49999999999999999999999999999999766 99988777543
No 6
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=9.2e-67 Score=489.83 Aligned_cols=275 Identities=37% Similarity=0.689 Sum_probs=255.4
Q ss_pred cccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 020108 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL 106 (331)
Q Consensus 27 ~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~ 106 (331)
+||.+|+.+| +|++||++|++|++++++||.|+|||+++|+.+|.+||+.||++++++|++|+.+|++|++++.+.++
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~ 79 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIM 79 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 6888888888 99999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
+.+++||+++|+++|+++|++|+++||+++++++.|+.++.++|+++.++|.+++|++++.+++++.+++.+++++++++
T Consensus 80 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 159 (281)
T PF00268_consen 80 PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVIL 159 (281)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987888899999999999999999999999998777788999999999
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHhhcC
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--KRLHWQKVHHMVHEAVEIETQFVCEALP 264 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~--~e~~~~~i~~l~~eave~E~~~~~~~~~ 264 (331)
|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++ .++.++.|++++++||++|.+|++..++
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~~~~~~~ 239 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEFIDDILP 239 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 4567789999999999999999998888
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCc
Q 020108 265 CALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKG 303 (331)
Q Consensus 265 ~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p 303 (331)
+++.|++.+++++||+|+||+||.+||++++|++..++|
T Consensus 240 ~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~~ 278 (281)
T PF00268_consen 240 GDIIGLNKEDIKQYIKYNANRRLRNLGFEPIYNVENPFP 278 (281)
T ss_dssp GGGTTBSHHHHHHHHHHHHHHHHHHTTS--SSTTCCSST
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Confidence 889999999999999999999999999999999866554
No 7
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=8.8e-66 Score=499.74 Aligned_cols=278 Identities=23% Similarity=0.316 Sum_probs=256.0
Q ss_pred cccCccccccCCCce-eecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 020108 22 QEDQEPILMEQNQRF-CMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (331)
Q Consensus 22 ~~~~~~ll~~~~~~~-~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~ 100 (331)
+..+++||+|++.++ .+.|++|||+|++|+++.++||+|+|||+++|+.||.+||+.||++++++|++|+.+|++|+++
T Consensus 12 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~ 91 (376)
T PRK09101 12 DQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 91 (376)
T ss_pred ccccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455699999997654 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhch-------
Q 020108 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS------- 173 (331)
Q Consensus 101 l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~------- 173 (331)
+...+++.+++||+++++++|+++|+||+++||+|+++++.+|++ +|+++.++|.+++|++|+.+++++.
T Consensus 92 ~~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~e---~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~ 168 (376)
T PRK09101 92 PNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSV---VFDDIVTNEEILKRAKDISSYYDDLIEMTSYY 168 (376)
T ss_pred hHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 988899999999999999999999999999999999999888776 9999999999999999999988642
Q ss_pred -----------------------HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHH
Q 020108 174 -----------------------DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (331)
Q Consensus 174 -----------------------~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~ 230 (331)
..+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~ 248 (376)
T PRK09101 169 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 248 (376)
T ss_pred hhcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 224556688889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--hch---------HHHHHHHHHHHHHHHHHHHHhhc-CCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc
Q 020108 231 LYSLLRK--RLH---------WQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFII 298 (331)
Q Consensus 231 l~~~l~~--e~~---------~~~i~~l~~eave~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~ 298 (331)
+++++.. +.+ .++|++++++||++|.+|+++++ +++++||+.+.+++||+|+||+||.+||++++|++
T Consensus 249 l~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~~ 328 (376)
T PRK09101 249 MLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 328 (376)
T ss_pred HHHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999984 322 35899999999999999999999 45799999999999999999999999999999984
Q ss_pred ccCCc
Q 020108 299 ACVKG 303 (331)
Q Consensus 299 ~~~~p 303 (331)
..||
T Consensus 329 -~~nP 332 (376)
T PRK09101 329 -RSNP 332 (376)
T ss_pred -CCCC
Confidence 3566
No 8
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.4e-65 Score=490.79 Aligned_cols=274 Identities=24% Similarity=0.352 Sum_probs=254.7
Q ss_pred cccccC-CCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 020108 27 PILMEQ-NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARF 105 (331)
Q Consensus 27 ~ll~~~-~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l 105 (331)
++++|+ .++.+++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~ 81 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL 81 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 467776 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc--hHHHHHHHHHH
Q 020108 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGF 183 (331)
Q Consensus 106 ~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~ 183 (331)
.+.++.||+++++++|+++|+||+++||+++++++. +++++++|+++.++|.+++|++|+.+++++ ...+.++++++
T Consensus 82 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~-~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~ 160 (324)
T PRK09614 82 MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCS-PEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVAS 160 (324)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999964 555688999999999999999999999984 23577888888
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHH
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIET 256 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~ 256 (331)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+. ++|++++++||++|.
T Consensus 161 ~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~ 240 (324)
T PRK09614 161 VFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987663 679999999999999
Q ss_pred HHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc
Q 020108 257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI 304 (331)
Q Consensus 257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~ 304 (331)
+|++++++ ++| +.+++++||+|+||+||++||++++|+....||.
T Consensus 241 ~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~ 285 (324)
T PRK09614 241 AYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNP 285 (324)
T ss_pred HHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCh
Confidence 99999997 999 9999999999999999999999999963344553
No 9
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=2e-64 Score=475.20 Aligned_cols=270 Identities=52% Similarity=0.860 Sum_probs=256.5
Q ss_pred eeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHH
Q 020108 36 FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEAR 115 (331)
Q Consensus 36 ~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~ 115 (331)
++++|++|||+|++|++++++||.|+|||+++|+.||++||+.||+++++++++|+.+|++|++++.+.+.+.+++||++
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~ 80 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEAR 80 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhch-----HHHHHHHHHHHHhHHHH
Q 020108 116 AFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-----DSFAERLVGFACVEGIF 190 (331)
Q Consensus 116 ~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~-----~~~~~~lv~~~~lEgi~ 190 (331)
+|+++|+++|+||+++||+++++++.++ +++++|+++.++|.+++|++|+.+++++. +++++++++++++||++
T Consensus 81 ~~~~~q~~~E~iH~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 159 (288)
T cd01049 81 AFYGFQAFMENIHSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIF 159 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 77889999999999999999999999753 47999999999999999
Q ss_pred HHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-------hHHHHHHHHHHHHHHHHHHHHhhc
Q 020108 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL-------HWQKVHHMVHEAVEIETQFVCEAL 263 (331)
Q Consensus 191 f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~-------~~~~i~~l~~eave~E~~~~~~~~ 263 (331)
|+|||+++++|+++|+|||+++++++|+|||++|+.|++.+++.++.+. ..+.|.+++++||++|.+|+++++
T Consensus 160 f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E~~~~~~~~ 239 (288)
T cd01049 160 FYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLL 239 (288)
T ss_pred HHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998773 467899999999999999999999
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcccc
Q 020108 264 PCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGIAR 306 (331)
Q Consensus 264 ~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~~~ 306 (331)
+.++.|++.+++++||+|+||+||.+||++++|++...||+.-
T Consensus 240 ~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~ 282 (288)
T cd01049 240 PDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDW 282 (288)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 8899999999999999999999999999999999765788653
No 10
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.4e-63 Score=474.00 Aligned_cols=279 Identities=18% Similarity=0.262 Sum_probs=255.2
Q ss_pred cccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 020108 27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL 106 (331)
Q Consensus 27 ~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~ 106 (331)
++++| ....+++|++|||++.+|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+.
T Consensus 6 ~~~~~-~~~~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~ 84 (324)
T PRK13966 6 KLIDR-VSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLI 84 (324)
T ss_pred ccccc-cccccCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444 33568899999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
+.++.||+++|+++|+++|+||+++||+++++++. +++++++|+++.++|.+++|++|+.+++++... ++++++++++
T Consensus 85 ~~~~~pe~~~~~~~q~~~E~IHsesYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~~-~~~~va~~~l 162 (324)
T PRK13966 85 PDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENRNLQRKAEIVLQYYRGDEP-LKRKVASTLL 162 (324)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHhcCHHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Confidence 99999999999999999999999999999999974 678888999999999999999999999987654 6999999999
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc---hH----HHHHHHHHHHHHHHHHHH
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL---HW----QKVHHMVHEAVEIETQFV 259 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~---~~----~~i~~l~~eave~E~~~~ 259 (331)
||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..+. .. +++++++++||++|++|+
T Consensus 163 Egi~FysgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E~e~~ 242 (324)
T PRK13966 163 ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYT 242 (324)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999776433 22 467999999999999999
Q ss_pred HhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc--ccCCccccCCCCc
Q 020108 260 CEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFII--ACVKGIARAGLFF 311 (331)
Q Consensus 260 ~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~--~~~~p~~~~~~~~ 311 (331)
.+++ +++||+. ++++||+|+||+||++||++++|+. ...||+.+++++.
T Consensus 243 ~~~~--~~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~~~~~~~~ 293 (324)
T PRK13966 243 QDLY--DEVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSP 293 (324)
T ss_pred HHHH--hcCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCChhHHhhcc
Confidence 9998 5799986 6999999999999999999999985 3579988877754
No 11
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.4e-62 Score=482.82 Aligned_cols=282 Identities=23% Similarity=0.349 Sum_probs=256.9
Q ss_pred hhhcccccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHh--cCCHHHHHHHHHHHHHHHH
Q 020108 15 REQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE--RLLDSEKHFISHVLAFFAA 92 (331)
Q Consensus 15 ~~~~~~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~--~L~~~Er~~~~~~la~l~~ 92 (331)
+..++.+...+.+|+.+.. +++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|++
T Consensus 80 ~~g~l~~~~~~~~~~~~~~---~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~~ 156 (410)
T PRK12759 80 RAGEVIARVKGSSLTTFSK---TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFTQ 156 (410)
T ss_pred HhCCHHHHhcCCccccccc---ccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4455666677777877544 8899999999999999999999999999999999997 6999999999999999999
Q ss_pred HHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Q 020108 93 SDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS 172 (331)
Q Consensus 93 ~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~ 172 (331)
+|++|++++.+.+++.++.||+++++++|+++|+||+++||+++++++.+++ .|+.+.++|.+++|++|+.++...
T Consensus 157 lD~~v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~----~~~~~~~~~~~~~k~~~~~~~~~~ 232 (410)
T PRK12759 157 SDVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDS----EYHAFLEYKAMTDKIDFMMDADPT 232 (410)
T ss_pred HHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHhhHHHHHHHHHHHhcCcc
Confidence 9999999998899999999999999999999999999999999999976533 499999999999999999876543
Q ss_pred -hHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHH
Q 020108 173 -SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKV 244 (331)
Q Consensus 173 -~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i 244 (331)
...+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.+ ++.+
T Consensus 233 ~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v 312 (410)
T PRK12759 233 TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEI 312 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHH
Confidence 34578888888999999999999999999999999999999999999999999999999999976544 4689
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc
Q 020108 245 HHMVHEAVEIETQFVCEALPC-ALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI 304 (331)
Q Consensus 245 ~~l~~eave~E~~~~~~~~~~-~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~ 304 (331)
++++++||++|++|++++++. .++|++.+++++||+|+||+||++||++++|++ ..||+
T Consensus 313 ~~~~~eave~E~~~~~~~~~~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~-~~nP~ 372 (410)
T PRK12759 313 YLMASKAVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNI-EKNPL 372 (410)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCh
Confidence 999999999999999999964 699999999999999999999999999999985 35663
No 12
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=5.3e-61 Score=459.81 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=246.2
Q ss_pred CceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHH
Q 020108 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (331)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E 113 (331)
+..++.|++|||++++|+++.++||+|+|||+++|++||++||+.||++++++|++|+++|++|++.+.....+....++
T Consensus 23 ~~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~ 102 (335)
T PRK13965 23 RSINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 102 (335)
T ss_pred ccccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchH
Confidence 45688999999999999999999999999999999999999999999999999999999999999887555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHh
Q 020108 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (331)
Q Consensus 114 ~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s 193 (331)
.++++++|+++|+||+++||+++++++.++ +++++|+++.++|.+++|++|+.+++++.. .++++++++++||++|||
T Consensus 103 e~~~l~~q~~~E~IHs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEGi~Fys 180 (335)
T PRK13965 103 EQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRRARVLIPYYTGDD-PLKSKVAAAMMPGFLLYG 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997655 667899999999999999999999998654 478999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 020108 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (331)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~~~~~~~~~~~ 266 (331)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..++++ ++|++++++||++|.+|+.++++
T Consensus 181 gFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E~~~~~~~~~-- 258 (335)
T PRK13965 181 GFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYA-- 258 (335)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999876655432 46899999999999999999995
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccc--cCCccccCCCCc
Q 020108 267 LIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIA--CVKGIARAGLFF 311 (331)
Q Consensus 267 ~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~--~~~p~~~~~~~~ 311 (331)
.+|++.+ +++||+|+||+||++||++++|++. .+||..+++++.
T Consensus 259 ~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~ 304 (335)
T PRK13965 259 GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSA 304 (335)
T ss_pred CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCc
Confidence 6999766 9999999999999999999999865 337766666653
No 13
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=1.2e-59 Score=448.31 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=248.9
Q ss_pred CCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCh
Q 020108 32 QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI 111 (331)
Q Consensus 32 ~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~ 111 (331)
+....++..++|+|..++|+++.++||.|+|||+++|+.||++||+.||++++++|++++.+|++|+.++.+.+...++.
T Consensus 8 ~~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~~ 87 (322)
T PRK13967 8 RVHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVT 87 (322)
T ss_pred ccccCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCC
Confidence 34567888899999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHH
Q 020108 112 PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFF 191 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f 191 (331)
||+++|+++|+++|+||+++||+++++++. +++++++|+++.++|.+++|++|+.+++++.. ..+++++++++||++|
T Consensus 88 ~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~-~~~~~v~~~~lEgi~F 165 (322)
T PRK13967 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRGDD-ALKRKASSVMLESFLF 165 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999965 57778899999999999999999999998653 4688888999999999
Q ss_pred HhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHHHHHHHHHHHHHHHHhhcC
Q 020108 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVHEAVEIETQFVCEALP 264 (331)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~~l~~eave~E~~~~~~~~~ 264 (331)
||||+++++|+++|+|||++++|++|+|||++|+.|++.++.....+++ .+.+.+++.+++++|++|+.+++
T Consensus 166 ysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~~~E~~~~~~~~- 244 (322)
T PRK13967 166 YSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLY- 244 (322)
T ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999987744443432 24588999999999999999888
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccc--cCCccccCCCC
Q 020108 265 CALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIA--CVKGIARAGLF 310 (331)
Q Consensus 265 ~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~--~~~p~~~~~~~ 310 (331)
+++||+.+ +.+||+|+||+||++||++++|++. ..||+..+++.
T Consensus 245 -~~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~ 290 (322)
T PRK13967 245 -DELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALD 290 (322)
T ss_pred -CcCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhc
Confidence 58999855 8899999999999999999999863 45999877766
No 14
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=3.5e-50 Score=377.24 Aligned_cols=249 Identities=19% Similarity=0.261 Sum_probs=210.4
Q ss_pred HHHHHHHHhcC-CCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--hcCChHHHHHHHHHHH
Q 020108 46 VWEMYKKAQAS-FWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFL--NDIQIPEARAFYGFQI 122 (331)
Q Consensus 46 ~~~lykk~~~~-~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~--~~i~~~E~~~~l~~Q~ 122 (331)
.+++|++++++ ||+|+|||+++|++||++||+.||+++++++++|+.+|++|++++.+.+. ...+.||+++|+++|+
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~ 88 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFL 88 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 46899999999 99999999999999999999999999999999999999999999987665 4567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc--hHHHHHHHHH-HHHhHHHHHHhHHHHHH
Q 020108 123 AMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVG-FACVEGIFFSGSFCAIF 199 (331)
Q Consensus 123 ~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~-~~~lEgi~f~s~F~~~~ 199 (331)
++|++|+++||+++++++.+++ .+...++....+.++++..+....+++ +.+++.+.+. ..++||++|||||++++
T Consensus 89 ~~EaiH~esYs~~l~tl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~ 167 (280)
T cd07911 89 FEEAKHTDFFRRWLDAVGVSDD-LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWR 167 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976543 222344444444455555555555543 3455664443 46899999999999987
Q ss_pred -HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhhc---CCCcCCCCHH
Q 020108 200 -WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--WQKVHHMVHEAVEIETQFVCEAL---PCALIGMNSS 273 (331)
Q Consensus 200 -~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--~~~i~~l~~eave~E~~~~~~~~---~~~~~Gl~~~ 273 (331)
+++++|+|||++++|++|+|||++|+.||+.+++.++++.+ .+.+.+.++++++.|.++.+++. +..++|++.+
T Consensus 168 ~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~~~~~~~~~~~~g~~~~ 247 (280)
T cd07911 168 TICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPD 247 (280)
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCHH
Confidence 79999999999999999999999999999999999997754 24578888888888888887764 4569999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC
Q 020108 274 LMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 274 ~~~~yi~y~an~~L~~lG~~~~ 295 (331)
++.+|++|.||+||..||++|-
T Consensus 248 ~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 248 ELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999884
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=7.3e-50 Score=379.66 Aligned_cols=244 Identities=19% Similarity=0.279 Sum_probs=214.6
Q ss_pred HHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCh---HHHHHHHHHHHH
Q 020108 47 WEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI---PEARAFYGFQIA 123 (331)
Q Consensus 47 ~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~---~E~~~~l~~Q~~ 123 (331)
.++|++++++||+|+|||+++|+.||++||+.||+++++++++|+.+|++|+.++.+ +...++. ||+++|+++|++
T Consensus 28 ~~ly~~~~~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~~~e~~~~l~~q~~ 106 (311)
T PRK08326 28 MKLFAKGNAKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEGRLEDEMYLTQFAF 106 (311)
T ss_pred HHHHHHHHHcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999975 5566666 999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHH----HHHHHhh---chHHHHHHHHHH-HHhHHHHHHhHH
Q 020108 124 MENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAK----WALDWIH---SSDSFAERLVGF-ACVEGIFFSGSF 195 (331)
Q Consensus 124 ~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~----~i~~~~~---~~~~~~~~lv~~-~~lEgi~f~s~F 195 (331)
+|++|+++|++++++++.+. + ++.++.++|.+++|.. +....+. +++.++.++++| .++|||+|||||
T Consensus 107 ~EaiH~e~Y~~~le~l~~~~-~---~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF 182 (311)
T PRK08326 107 EEAKHTEAFRRWFDAVGVTE-D---LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGY 182 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCH-H---HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996543 3 6777778899999853 4444343 345677888876 579999999999
Q ss_pred HHH-HHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH------HHHHHHHHHHHHHHHHHHHhhcCCCcC
Q 020108 196 CAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW------QKVHHMVHEAVEIETQFVCEALPCALI 268 (331)
Q Consensus 196 ~~~-~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~------~~i~~l~~eave~E~~~~~~~~~~~~~ 268 (331)
+++ ++++++|+|||++++|++|.|||++|+.||+.+++.++.+.+. +.+.+++.+|+++ ++|+.+.++.++.
T Consensus 183 ~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~-~~~~~~~~~~~i~ 261 (311)
T PRK08326 183 YAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL-IDEIFALYGDQIP 261 (311)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-HHHHHHhccCccc
Confidence 997 5999999999999999999999999999999999999976542 5788999999995 8999988876786
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCCCCC
Q 020108 269 -GMNSSLMSQYIKFVADRLLVHIHQCSLF 296 (331)
Q Consensus 269 -Gl~~~~~~~yi~y~an~~L~~lG~~~~y 296 (331)
|+|.+++.+||+|+||+||+.||+.+-=
T Consensus 262 ~Gl~~~~~~~Yi~y~an~RL~~iG~~~~~ 290 (311)
T PRK08326 262 FELSNDEFVDYAADRGQRRLGAIERARGR 290 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCccccC
Confidence 9999999999999999999999997743
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.64 E-value=7.6e-06 Score=77.76 Aligned_cols=178 Identities=16% Similarity=0.053 Sum_probs=100.0
Q ss_pred CCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHh----cCChHHHHHHHHHHHHHHH
Q 020108 56 SFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA-----ARFLN----DIQIPEARAFYGFQIAMEN 126 (331)
Q Consensus 56 ~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~-----~~l~~----~i~~~E~~~~l~~Q~~~E~ 126 (331)
..|.|.+...--+-.-|++||+++|..+.+--.......++..+... ..++. .-.....+.|...++.+|+
T Consensus 47 ~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~ 126 (304)
T PF11583_consen 47 RPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEA 126 (304)
T ss_dssp S-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHH
T ss_pred ccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 45665555544555689999999999887654444444444444332 23332 2245677888888999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCC
Q 020108 127 IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGL 206 (331)
Q Consensus 127 iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~ 206 (331)
.|+.+|.++++..+.. . .+-. ...-+........+.........-...+....+.|.+.- .+... .....++
T Consensus 127 rH~~mf~~~~~~~~~~--~--~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~--~~~~~-~~~D~~i 198 (304)
T PF11583_consen 127 RHSLMFARAINRTGRR--R--GLAP-LPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID--AYQRE-IARDETI 198 (304)
T ss_dssp HHHHHHHHHHHHHHHH--T--T-----S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH--HHHHH-HHT-SSS
T ss_pred HHHHHHHHHHHHHhhh--c--Cccc-CCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH--HHHHH-hhcCCCC
Confidence 9999999999988610 0 0000 111122223333333322211111112222245677632 11111 1333457
Q ss_pred CCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 020108 207 MPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (331)
Q Consensus 207 l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (331)
-|-+.++++...+||++|+.|+...++....+.+.
T Consensus 199 qP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 199 QPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 78899999999999999999999999999887764
No 17
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=97.87 E-value=0.0073 Score=60.79 Aligned_cols=221 Identities=13% Similarity=0.051 Sum_probs=132.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f 150 (331)
.+..+++.-.++++..++.+..++-......+ .+.+..+.++++..+.+|+.+|.+|+..=.+....+..+-..-..--
T Consensus 67 ~~~~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~a-~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~ 145 (465)
T cd01057 67 AYEKVDPRWVEAMKLFLGAITPGEYAAVRGMA-MLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQ 145 (465)
T ss_pred ccccCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHH
Confidence 35679999999999999999998876655544 57788999999999999999999999887666655533100000001
Q ss_pred HHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHH-HcCCCCChHHHHHHHHhhhhhHHHHH
Q 020108 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFA 228 (331)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~g~l~g~~~~i~~I~RDE~~H~~f~ 228 (331)
..+.++|..+.--..+.+...+. ...+.+++.. +.|.++=-..|..+-..+ .+|= .-+..++.-++.||++|...|
T Consensus 146 ~~~~~~~~~~~~R~~~ed~~~t~-D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD-~~tptv~~S~QsDe~Rh~~~g 223 (465)
T cd01057 146 KAFHGNWYAGAAKRFFFDGFITG-DAVEAALALQFVFETAFTNLLFVALASDAAANGD-YATPTVFLSIQSDEARHMANG 223 (465)
T ss_pred HHHhhCcHHHHHHHHHHHHHhcC-CHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhH
Confidence 23345565544222222222222 3567777774 567753322233222232 2331 235566677789999999999
Q ss_pred HHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHhhc--------CCCcCCCCHHHHHHHHHHHHHHHHHhC---CCCCC
Q 020108 229 CLLYSLLRKRLH-WQKVHHMVHEAVEIETQFVCEAL--------PCALIGMNSSLMSQYIKFVADRLLVHI---HQCSL 295 (331)
Q Consensus 229 ~~l~~~l~~e~~-~~~i~~l~~eave~E~~~~~~~~--------~~~~~Gl~~~~~~~yi~y~an~~L~~l---G~~~~ 295 (331)
..++..+.+.+. ...+.+-+....-.-.+.++.+. +...... ++.+..||.-..-..+..| |++.+
T Consensus 224 ~~ll~~l~~Dp~N~~~lq~wld~w~wr~~~a~~~l~g~~~dY~~~~r~~s~-~e~~~~wi~~~~~~~~~~L~~~Gl~~P 301 (465)
T cd01057 224 YPTLVLLENDPDNVPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSW-KEFWEEWIEEDFGSYFKDLEKYGLKKP 301 (465)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHccCCcCcccH-HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999966655432 34455555444443333333222 2223333 4566666665555677777 99654
No 18
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.53 E-value=0.013 Score=53.85 Aligned_cols=163 Identities=17% Similarity=0.044 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH
Q 020108 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK---DSKEKHRLF 150 (331)
Q Consensus 74 ~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~---d~~e~~~~f 150 (331)
.|++.-++.++..++-+...+-......+ .+.+..+.++++..+.+|+++|.+|.--=.+++..+.. ++.--. =
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k 142 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMASA-YIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--K 142 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--H
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--H
Confidence 46999999999999999998876655544 57888999999999999999999999988888887732 221000 2
Q ss_pred HHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
..+.++|..+---..+.+.+-. ..+.+.+|+.. ++|+++..-.|..+-..+..+==..+..++..+..||.+|...+-
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~ 221 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLVT-YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGD 221 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTS-SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777665543333332222 23678888885 579986655555444333322124578888999999999999999
Q ss_pred HHHHHHHhhch
Q 020108 230 LLYSLLRKRLH 240 (331)
Q Consensus 230 ~l~~~l~~e~~ 240 (331)
.+++.+.++++
T Consensus 222 al~~~~~~~~~ 232 (233)
T PF02332_consen 222 ALFKMALEDDP 232 (233)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 19
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.45 E-value=0.014 Score=55.37 Aligned_cols=169 Identities=16% Similarity=-0.015 Sum_probs=97.6
Q ss_pred HhcCCCCCcccCccc-------chHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcC-----ChHHHHH
Q 020108 53 AQASFWTAEEVDLSQ-------DVQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI-----QIPEARA 116 (331)
Q Consensus 53 ~~~~~W~peeidl~~-------D~~d~~----~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i-----~~~E~~~ 116 (331)
..+.-|.|+++=+-. +..+|+ +||+..+.++...+--=-.+.+-+ ..+...+ ..++...
T Consensus 23 ~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~-----~~L~~~f~~~~~~~~~w~~ 97 (297)
T cd01050 23 PVEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH-----SMLNRLFGLDDESPTAWAR 97 (297)
T ss_pred cHhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH-----HHHHHHcCcccccccHHHH
Confidence 344678887654433 555664 688877765543321111111111 1222222 2278889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHhHHHHHHh
Q 020108 117 FYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIFFSG 193 (331)
Q Consensus 117 ~l~~Q~~~E~iH~esYs~il~~~~~-d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~f~s 193 (331)
|.....++|+.|+.+-..++-.-+. ||.. +... +...+..-++. +.+....++.-.+-|..-+ +
T Consensus 98 w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---le~~---------~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~-v 164 (297)
T cd01050 98 WVRRWTAEENRHGDLLNKYLYLTGRVDPRA---LERT---------RQYLIGSGFDPGTDNSPYRGFVYTSFQELATR-I 164 (297)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCCCCHHH---HHHH---------HHHHHhCCCCCCCcccHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999988876432 4544 2111 11122222221 1122234333345666532 3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch
Q 020108 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (331)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~ 240 (331)
++..+..+.+ .-=|-++++...|++||.+|..|...+++.+....+
T Consensus 165 ~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp 210 (297)
T cd01050 165 SHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDP 210 (297)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333444442 134889999999999999999999999987775444
No 20
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.42 E-value=0.0057 Score=48.19 Aligned_cols=111 Identities=18% Similarity=0.033 Sum_probs=71.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
.+...+++++.+.++..++.+|..|.+.+..++..++.+|...... . .+.........++...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~------------~-~~~~~~~~~~~~~~~~l~~~ 85 (130)
T cd00657 19 QLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH------------L-LAAYALPKTSDDPAEALRAA 85 (130)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------H-HHhcccCCCccCHHHHHHHH
Confidence 4556677999999999999999999999999999987665431111 0 01111111222333444444
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l 231 (331)
...|.. ....|..+. +...-|.+.++++.+.+||..|..++..+
T Consensus 86 ~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 86 LEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566774 223333332 22225889999999999999999987654
No 21
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.34 E-value=0.11 Score=49.14 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 020108 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (331)
Q Consensus 75 L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~ 154 (331)
||+.-|..+.+.+..++-.+-+.+.-.. ......|.-|.+.-++..+-+|.=|+..+-.+..+++.+.++ ....+.
T Consensus 17 mp~~yr~~L~r~l~~~AdsEli~a~r~~-eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~e---d~~a~~ 92 (289)
T TIGR02156 17 MPAAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREE---LLDALL 92 (289)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHhccccc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHh
Confidence 8888899999999999887766655444 466778899999999999999999999999999999764333 333222
Q ss_pred hcHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 020108 155 NIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (331)
Q Consensus 155 ~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l 231 (331)
..+ .++.. .++ ...+|+..++- -+|+.++..+. .|. +.--+-++.+...|++.|+.|..++...
T Consensus 93 r~~-----~~f~n-l~e~P~~dwA~tivr------~~l~D~~~~~~~~~L~-~SSy~plA~ia~Ki~KEe~yH~rh~~~w 159 (289)
T TIGR02156 93 TGK-----AKYSS-IFNYPTLTWADIGVI------GWLVDGAAIMNQTPLC-RCSYGPYSRAMVRICKEESFHQRQGYEI 159 (289)
T ss_pred cCh-----Hhhcc-chhCCCCCHHHHHHH------HHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 11111 122 12245444332 23445555444 232 4456779999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHhhcCC--------------CcCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 020108 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC--------------ALIGMNSSLMSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 232 ~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~ 294 (331)
+..|.... ++-++.+.+|++.=--++..+|+. ++-..+.+++.+--.-.....|..+|++-
T Consensus 160 l~rL~~GT--~esr~r~Q~Ald~~Wp~~~emFg~~d~e~~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~agL~~ 234 (289)
T TIGR02156 160 MLTLARGT--QEQRQMAQDALNRWWWPSLMMFGPHDADSPNSGQSTKWKIKRNSNDELRQKFIDATVPQLESLGLTI 234 (289)
T ss_pred HHHHHcCC--HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88887432 355666666666555555555521 22224667777766667788899999865
No 22
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=97.27 E-value=0.17 Score=47.41 Aligned_cols=207 Identities=12% Similarity=0.016 Sum_probs=130.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 020108 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLF 150 (331)
Q Consensus 72 ~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e~~~~f 150 (331)
-..+|+..+..+.+.+..++-.+-+.+..+.. .....|..|.+.-++..+-+|.-|+..+-.++..+.+ ..++-+-.|
T Consensus 7 ~~~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~ 85 (263)
T PF05138_consen 7 PDEMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDLAF 85 (263)
T ss_dssp TSS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHh
Confidence 34799999999999999888888777777764 6778899999999999999999999999999999933 222211122
Q ss_pred HHHhhcHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHH
Q 020108 151 NAIENIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDF 227 (331)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f 227 (331)
..-... . |+- ..++ ...+|+..++.. +|+..+..+. .| .+.--+-++.+.+.|.++|..|..+
T Consensus 86 ~R~~~~--~--rn~---~l~e~p~~dwa~~v~r~------~l~d~~~~~~l~~l-~~ssy~pla~~a~k~~kEe~yH~~h 151 (263)
T PF05138_consen 86 LRDARE--F--RNL---LLFEQPNGDWADTVARQ------FLFDRAGKVLLEAL-ADSSYEPLAAIAAKILKEEAYHLRH 151 (263)
T ss_dssp HHHTTC--S---SS---GGGGS---SHHHHHHHH------HHHHHHHHHHHHHH-TT-SBHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccch--h--hhh---hhhccCCCCHHHHHHHH------HHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111000 0 000 0111 123455444322 2333333333 23 3455677999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhcC---------CCcCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 020108 228 ACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALP---------CALIGMNSSLMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 228 ~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~~---------~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (331)
+..-++.|...- ++-++.+.+|++.=-.++..+|+ ....+.+.+.+.+--.-.....|..+|++-+
T Consensus 152 ~~~w~~rL~~gt--~es~~r~q~Al~~~wp~~~elF~~~~~~~~l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~P 226 (263)
T PF05138_consen 152 GEDWLRRLGDGT--EESRERMQAALDRLWPYTLELFGPDDSEEALAWGGRAPDNEELRQRWLAEVVPVLEEAGLEVP 226 (263)
T ss_dssp HHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHCC-S-HCHHHHHCTTSSS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999888887332 24445555555554445544442 2456777777777666788889999998643
No 23
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=97.26 E-value=0.14 Score=48.85 Aligned_cols=201 Identities=11% Similarity=-0.012 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 020108 75 LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 154 (331)
Q Consensus 75 L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~ 154 (331)
||+.-|..+.+.+..++-.+-+.+.-+. ......|.-|.+.-++..+-+|.=|+..+-.+..+++.+.++ ....+.
T Consensus 35 mp~~yr~~L~~~l~~laDseLi~a~r~~-eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e---~~~a~~ 110 (314)
T PRK13778 35 MPDAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREE---LIDDLL 110 (314)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcchhc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHh
Confidence 7788888898888888887766655544 356678889999999999999999999999999999764333 443332
Q ss_pred hcHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 020108 155 NIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (331)
Q Consensus 155 ~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l 231 (331)
..+ .++.. .++ ...+|+..++- -+|+.++.++. .|. +.--+-++.+...|++.|+.|..++...
T Consensus 111 r~~-----~~f~n-~fe~P~~dwAdtvvr------~~L~D~a~~~~~~~L~-~sSy~plA~~a~Ki~KEe~yH~rhg~~w 177 (314)
T PRK13778 111 SGK-----AKYSS-IFNYPTLTWADVGVI------GWLVDGAAIMNQVPLC-RCSYGPYARAMVRICKEESFHQRQGEEI 177 (314)
T ss_pred cch-----HHhcc-cccCCCCCHHHHHHH------HHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22211 122 12245444332 12344555443 233 3455678999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHhhcCC--------------CcCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 020108 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC--------------ALIGMNSSLMSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 232 ~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~ 294 (331)
+..|... .++-++.+.+|++.=--++..+|+. ++...+.+++++--.-.....|..+|++-
T Consensus 178 l~rL~~G--T~esr~r~Q~Ald~~Wp~~~emFg~~d~~s~~~~~~~~~Gik~~~n~eLR~~w~~~v~~~l~~~gL~v 252 (314)
T PRK13778 178 LLALARG--TPAQKQMAQDALNRWWWPALMMFGPPDDDSPHSAQSMAWKIKRFSNDELRQKFVDATVPQAEVLGLTL 252 (314)
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8888753 3456666777777655555555521 22225667777655557777889999754
No 24
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.25 E-value=0.087 Score=50.32 Aligned_cols=166 Identities=10% Similarity=-0.050 Sum_probs=111.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HH
Q 020108 70 QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KH 147 (331)
Q Consensus 70 ~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e--~~ 147 (331)
..+.+|++.-++.++..++-+...+-....+.+ .+.+..+.+.++..+.+|+++|.+|+.--+++...+.++... -.
T Consensus 88 ~~~~~ld~~w~~~l~~~l~p~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~ 166 (304)
T cd01058 88 GLAEALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGD 166 (304)
T ss_pred CChhhCCHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCch
Confidence 356689999999999999998888865544443 467788899999999999999999999988776565432111 11
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHH-HHHcCCCCChHHHHHHHHhhhhhHH
Q 020108 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFW-LKKRGLMPGLTFSNELISRDEGLHC 225 (331)
Q Consensus 148 ~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~-l~~~g~l~g~~~~i~~I~RDE~~H~ 225 (331)
.--..+.++|.-+---..+.+.+-. ..+.+.+++.. ++|+++-.-.|..+-. .+.+|= .-+..++..+..||++|.
T Consensus 167 ~~k~~W~~dp~Wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD-~~t~~l~~s~q~d~~Rh~ 244 (304)
T cd01058 167 AAKEAWEEDPAWQGLRELVEKLLVT-YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGD-TLTPLLTEFMLDDAQRHR 244 (304)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHHHHHH
Confidence 1223355666544211122111111 23667778774 6788854433333322 223332 347788899999999999
Q ss_pred HHHHHHHHHHHhh
Q 020108 226 DFACLLYSLLRKR 238 (331)
Q Consensus 226 ~f~~~l~~~l~~e 238 (331)
..+..+++.+.++
T Consensus 245 ~~~~alvk~l~~~ 257 (304)
T cd01058 245 RWTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988874
No 25
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=96.74 E-value=0.35 Score=42.40 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 020108 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (331)
Q Consensus 76 ~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e--~~~~f~~~ 153 (331)
|+.=|++|.++=+-..-++....+|... +...+|+ -+-=+..-+-||++|.+.|.--=+.+.-.|+- -.+.|..
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi~-la~llP~--~~deL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~- 79 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYIS-LAELLPD--QKDELIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSP- 79 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-GG--GHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH-
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHHH-HHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHH-
Confidence 5667899999999989999888888763 6655544 44446677789999999998777777544432 0112211
Q ss_pred hhcHHHHHHHHHHHHHhh---chHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 154 ENIPCVAQKAKWALDWIH---SSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~---~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
+...+. .......+++... ++|.. ..++|-+.. .= .=|-..++-.-+.+||..|..||-
T Consensus 80 ------------Lh~nFq~A~~~gk~~tCLlIQaliIE~F-AIaAYniYI--pV--AD~FARkITegVVkDEy~HLNfGe 142 (219)
T PF11266_consen 80 ------------LHGNFQRAAAEGKVVTCLLIQALIIECF-AIAAYNIYI--PV--ADPFARKITEGVVKDEYTHLNFGE 142 (219)
T ss_dssp ------------HHHHHHHHHHTT-HHHHHHHHHTHHHHH-HHHHHHHHG--GG--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHcCCeeehHHHHHHHHHHH-HHHHhhhce--ec--ccHHHHHHHHHHHhhHHHhcchHH
Confidence 111111 1112344444443 45542 223333321 00 002344677889999999999997
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhc-CCCcCCCCHHH-HHHHHHHHHHHHHHhCCCCC
Q 020108 230 LLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSL-MSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 230 ~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~~~~~Gl~~~~-~~~yi~y~an~~L~~lG~~~ 294 (331)
.-++.-. +-+++++.+.-++...+-.+.++..- +-.++||+++. +..|+- .-...|.++|++.
T Consensus 143 ~WLk~~f-~~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 207 (219)
T PF11266_consen 143 EWLKANF-EQSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVEDFMI-AYGEALSNIGFTT 207 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH-HHHHHHHHHT--H
T ss_pred HHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 6543222 12234444444444444444444332 23678888754 555654 3456788888864
No 26
>PRK14983 aldehyde decarbonylase; Provisional
Probab=96.17 E-value=0.23 Score=43.98 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 020108 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (331)
Q Consensus 76 ~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e--~~~~f~~~ 153 (331)
|+.=|++|.++=+-..-++....+|... +...+| +-+-=+..-+-||++|.+.|.--=+.+.-.|+- -.+.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi~-la~llP--~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYIS-LATLLP--EHAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHHH-HHHHCc--ccHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 4566788888888777788777777753 555544 444456777889999999986655555433321 01122211
Q ss_pred hhcHHHHHHHHHHHHHhhc---hHHHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 154 ENIPCVAQKAKWALDWIHS---SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~---~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
...+.+ ......+++.. .++|.. ..++|.+..=.+ =|-..++-+-+.+||..|..||-
T Consensus 91 -------------h~nFq~A~~egkv~TCLlIQaLiIE~F-AIaAYniYIpVA----D~FARkITegVVkDEY~HLN~Ge 152 (231)
T PRK14983 91 -------------HGNFQKAAAEGKVVTCLLIQALIIEAF-AIAAYNIYIPVA----DPFARKITEGVVKDEYLHLNFGE 152 (231)
T ss_pred -------------HHHHHHHHhcCCeeehHHHHHHHHHHH-HHHHHhhccccc----cHHHHHHHHhHHhhHHHhcchHH
Confidence 111110 11123333333 345542 222332221000 12345677889999999999997
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhc-CCCcCCCCHHH-HHHHHHHHHHHHHHhCCCCC
Q 020108 230 LLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSL-MSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 230 ~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~~~~~Gl~~~~-~~~yi~y~an~~L~~lG~~~ 294 (331)
.=++.-.. -+++++.+.-++...+-.+.++..- +-.++||+++. +..|+- .-...|.++|++.
T Consensus 153 ~WLk~~f~-~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 217 (231)
T PRK14983 153 EWLKANFE-TSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVEDFMI-AYGEALSNIGFST 217 (231)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 65432221 1233444433333333334333322 23678888754 556654 3456788999864
No 27
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=95.97 E-value=0.2 Score=48.27 Aligned_cols=165 Identities=16% Similarity=0.019 Sum_probs=85.9
Q ss_pred cCCCCCcccCcccc-------hHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHhcCC--------hH
Q 020108 55 ASFWTAEEVDLSQD-------VQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLA---ARFLNDIQ--------IP 112 (331)
Q Consensus 55 ~~~W~peeidl~~D-------~~d~~----~L~~~Er~~~~~~la~l~~~D~~v~~~l~---~~l~~~i~--------~~ 112 (331)
+.-|.|.++=+-.+ ..+|+ +||+.-+.++... + +..++|. ..+...+. ..
T Consensus 27 ~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~---l-----lTEd~LPsY~~~l~~~~~~~~~~ga~~~ 98 (330)
T PF03405_consen 27 EKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGN---L-----LTEDNLPSYHRELATLFGVRDEDGASDS 98 (330)
T ss_dssp GGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHH---H-----HHHHTHHHHHHHHTTSTTT--SSSS--S
T ss_pred hhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHH---H-----HhhhhhhHHHHHHHhhcCccccCCCCCC
Confidence 47899977644333 44663 5777666543322 2 2222331 12333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcHHHHHHHHHHHHHhh--chHHHHHHHHHHHHhHHH
Q 020108 113 EARAFYGFQIAMENIHSEMYSLLLETYI-KDSKEKHRLFNAIENIPCVAQKAKWALDWIH--SSDSFAERLVGFACVEGI 189 (331)
Q Consensus 113 E~~~~l~~Q~~~E~iH~esYs~il~~~~-~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~--~~~~~~~~lv~~~~lEgi 189 (331)
+...|.+...++|++|+.+-..++-.-+ -||.+.++ .+...+.+-++ ....-...++...+-|-.
T Consensus 99 ~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~------------~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~A 166 (330)
T PF03405_consen 99 PWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALER------------TRMYLITAGFDPGFESDPYLGFVYTSFQERA 166 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCH------------CCHHHHHH----S-TTHHHHHHHHHHHHHHH
T ss_pred cHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHH------------HHHHHHhcCCCccCCCChHHHHHHHHHHHHH
Confidence 5788999999999999999888884332 14432100 01111221121 111112333322344543
Q ss_pred HHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch
Q 020108 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (331)
Q Consensus 190 ~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~ 240 (331)
-+ .++..+--+++.--=|-++++...|++||.+|..|.+.++..+....+
T Consensus 167 T~-vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dP 216 (330)
T PF03405_consen 167 TQ-VSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDP 216 (330)
T ss_dssp HH-HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HH-HHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCc
Confidence 22 223333333422234789999999999999999999999987775544
No 28
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.65 E-value=0.29 Score=46.74 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=108.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~--~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (331)
+|..|+++.|..+..-|-.-..++ .-|-.|-..+...+. +|++.-+++..+-+|++|+-+-+..+..++..
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 144 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLS------ 144 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcc------
Confidence 588999999987765543332222 112223334666666 89999999999999999999988888776532
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH--HHhHHHHHHhHHHHHH-HHHHc--CCCCChHHHHHHHHhhhhh
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~RDE~~ 223 (331)
...+.|.+.-.+. + |--+.|.| ++.|.|-+ .=|..+| .|.++ ..+--+=+-++.=+.||.+
T Consensus 145 -----lDLgfLtk~k~YT--f------F~PkfIfYatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 210 (355)
T PRK13654 145 -----LDLGFLTKKKKYT--F------FPPKFIFYATYLSEKIGY-WRYITIYRHLEKHPEHRFHPIFKFFENWCQDENR 210 (355)
T ss_pred -----ccchhhccCCcee--e------eCcceeeehhHhHhhhhH-HHHHHHHHHHHhCcccccCchHHHHHHHhcccch
Confidence 2223332211110 0 11112333 35677732 2233333 55554 3455566677778999999
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHHHHhhc-C--CCcCCCCHHHHHHHHHHHHHHHHHh
Q 020108 224 HCDFACLLYS---LLRKRLHWQKVHHMVHEAVEIETQFVCEAL-P--CALIGMNSSLMSQYIKFVADRLLVH 289 (331)
Q Consensus 224 H~~f~~~l~~---~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~L~~ 289 (331)
|+++...+++ .|.+.+-...--..+.=+|=. .-|+.+.- + .+.+||++.+....|--..|..-.+
T Consensus 211 HGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfa-Tmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~r 281 (355)
T PRK13654 211 HGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFA-TMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSAR 281 (355)
T ss_pred hHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHh-heeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHh
Confidence 9999998864 222221111111111111110 00000000 0 2567777777777777777766554
No 29
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.59 E-value=0.54 Score=44.83 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=109.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i--~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (331)
+|..|+++.|..+..-|-.-..++ .-|-.|-..+.+.+ ++|+..-+++..+-+|++|+-+-+..+..++..
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 140 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLS------ 140 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCcc------
Confidence 588999999987665543332222 11222333466666 459999999999999999999988888776532
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH--HHhHHHHHHhHHHHHH-HHHHc--CCCCChHHHHHHHHhhhhh
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~RDE~~ 223 (331)
...+.|.+.-.+. + |--+.|.| ++.|.|-+ .=|..+| .|.++ ..+--+=+-++-=+.||.+
T Consensus 141 -----lDLgfLtk~rkYT--f------F~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnR 206 (351)
T CHL00185 141 -----LDLGFLTKSRKYT--F------FSPKFIFYATYLSEKIGY-WRYITIYRHLEKNPEYRIYPIFKFFESWCQDENR 206 (351)
T ss_pred -----ccchhhccCCcee--e------ecccceehhhHHHhhhhh-hHHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 2223332211100 0 11122333 35677732 2233333 55554 3444566667778999999
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHHHHhhc-C--CCcCCCCHHHHHHHHHHHHHHHHHhC
Q 020108 224 HCDFACLLYS---LLRKRLHWQKVHHMVHEAVEIETQFVCEAL-P--CALIGMNSSLMSQYIKFVADRLLVHI 290 (331)
Q Consensus 224 H~~f~~~l~~---~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~L~~l 290 (331)
|+++...+++ .+.+.+-...--..+.=+|=. .-|+.+.- + .+.+||++.+....|--..|..-.++
T Consensus 207 HGdfF~almraqP~ll~g~~~kLW~RFFLlsVfa-Tmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rv 278 (351)
T CHL00185 207 HGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFA-TMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARL 278 (351)
T ss_pred hHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHH-HheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh
Confidence 9999998864 222221111111111111110 00111100 0 26778888888888887777766543
No 30
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=95.24 E-value=1.2 Score=42.46 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=109.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i--~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (331)
+|..|+++.|..+..-|-.-..++ .-|-.|-..+...+ ++|.+.-+++..+-+|++|+-+-+.-+..++..
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~------ 134 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLA------ 134 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcc------
Confidence 366799999987665543332222 11112333455666 778899999999999999999988888776531
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH--HHhHHHHHHhHHHHHH-HHHHc--CCCCChHHHHHHHHhhhhh
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~RDE~~ 223 (331)
...+.|.+.-.+. + +--+.|.| ++.|.|-+ .=|..+| .|.++ ..+--+=+-++.=+.||.+
T Consensus 135 -----lDLgfLtk~r~YT--f------F~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 200 (337)
T TIGR02029 135 -----LDLGFLTKTRKYT--F------FRPKFIYYATYLSEKIGY-WRYITIYRHLEENPENQFYPIFKYFESWCQDENR 200 (337)
T ss_pred -----cchhhhccCCcee--e------eccceeehhhHhHhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 2223332211100 0 11122333 35677732 2233333 55554 3444566667778999999
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHHHHhhc-C--CCcCCCCHHHHHHHHHHHHHHHHHhC
Q 020108 224 HCDFACLLYS---LLRKRLHWQKVHHMVHEAVEIETQFVCEAL-P--CALIGMNSSLMSQYIKFVADRLLVHI 290 (331)
Q Consensus 224 H~~f~~~l~~---~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~L~~l 290 (331)
|+++...+++ .+.+.+-...--..+.=+|=. .-|+.+.- + .+.+||++.+....|-...|..-.++
T Consensus 201 HGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfa-Tmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv 272 (337)
T TIGR02029 201 HGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYS-TMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRI 272 (337)
T ss_pred hHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHH-HHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhh
Confidence 9999998864 222221111111122111111 01111111 0 26789998888888888888776553
No 31
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.52 E-value=1.3 Score=41.81 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=108.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI--PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~--~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (331)
+|..++++.|..+..-|-.-..++ .-|-.|-..+...+++ |++.-.++..+-+|++|+-+-+.-+..++..
T Consensus 52 ~~~~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~------ 124 (323)
T cd01047 52 AADKIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLA------ 124 (323)
T ss_pred hhhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcc------
Confidence 366799998886665443322222 1122233456667755 9999999999999999999988888766431
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH--HHhHHHHHHhHHHHHH-HHHHc--CCCCChHHHHHHHHhhhhh
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~RDE~~ 223 (331)
...+.|.+.-.+. + +.-+.|.| ++.|.|-+ .=|..++ .|.++ ..+--+=+-.+.=+.||.+
T Consensus 125 -----lDLgfLtk~r~YT--f------F~PkfI~YatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 190 (323)
T cd01047 125 -----LDLGFLTKTRKYT--F------FKPKFIFYATYLSEKIGY-WRYITIYRHLERNPENQFHPIFKYFENWCQDENR 190 (323)
T ss_pred -----cchhhhccCCcee--e------eCccceeehhHhhhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 2223332211100 0 11112333 35677732 2233333 55554 3444566667778999999
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHHHHhhc-C--CCcCCCCHHHHHHHHHHHHHHHHHhC
Q 020108 224 HCDFACLLYS---LLRKRLHWQKVHHMVHEAVEIETQFVCEAL-P--CALIGMNSSLMSQYIKFVADRLLVHI 290 (331)
Q Consensus 224 H~~f~~~l~~---~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~L~~l 290 (331)
|+++...+++ .|.+.+-...--..+.=+|=. .-|+.+.- + .+.+|+++.+....|-...|..-.++
T Consensus 191 HGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfa-Tmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rv 262 (323)
T cd01047 191 HGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYA-TMYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARV 262 (323)
T ss_pred hhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHH-hheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh
Confidence 9999998864 222221111111122111110 00111000 0 26778888888888888888766553
No 32
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=94.48 E-value=1.3 Score=41.23 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHH---HHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH-HHhHHHHHHh
Q 020108 118 YGFQIAMENIHSEMYSLLLETYIKDSKE---KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSG 193 (331)
Q Consensus 118 l~~Q~~~E~iH~esYs~il~~~~~d~~e---~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~s 193 (331)
+...+.+|+.|-..+..-|..++.+-.+ -..+++...+. ..++..++... .++|+--+=.
T Consensus 104 ~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t----------------~~dl~~R~A~vp~~~EArGLD~ 167 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQT----------------AHDLLARMALVPRVLEARGLDV 167 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHh----------------ccCHHHHHHHHHHHHHhhCCCC
Confidence 5678899999999999999999854222 11233322211 11233333323 3456654433
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 020108 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (331)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~ 239 (331)
+=..+--|...|-. -++.+++.|.+||--|+.+|..=++.+.+..
T Consensus 168 ~p~~~~k~~~~gD~-~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~ 212 (253)
T PF04305_consen 168 TPFIIEKFRSAGDE-ESAAILEIILRDEIGHVAIGNRWFRYLCEQR 212 (253)
T ss_pred CHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 33333345555544 7899999999999999999999888887643
No 33
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=94.24 E-value=0.95 Score=43.27 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=106.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQ--IPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~--~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~ 148 (331)
+|..|+++.|..+..-|-.-..++ .-|-.|-..+.+.++ +|.+.-+++..+-+|++|+-+-+..+..++..
T Consensus 68 ~~~~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~------ 140 (357)
T PLN02508 68 AADKIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLA------ 140 (357)
T ss_pred chhhCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCcc------
Confidence 466799998886665443322222 111123334666674 59999999999999999999988888776531
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH--HHhHHHHHHhHHHHHH-HHHHc--CCCCChHHHHHHHHhhhhh
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~l~g~~~~i~~I~RDE~~ 223 (331)
.....|.+.-.+. + |--+.|.| ++.|.|-+ .=|..+| .|.++ ..+--+=+-++.=+.||.+
T Consensus 141 -----lDLgfLtk~rkYT--f------F~PkfIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnR 206 (357)
T PLN02508 141 -----LDLGFLTKNRKYT--F------FKPKFIFYATYLSEKIGY-WRYITIYRHLQANPDYQLYPIFKYFENWCQDENR 206 (357)
T ss_pred -----ccchhhcccCcee--e------eCcceeehhhHhhhhhhh-hhHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 2223332211100 0 01111323 35677732 2233333 55554 3444566667778999999
Q ss_pred HHHHHHHHHH---HHHhhchHHHHHHHHHHHHHHHHHHHHhhc-C--CCcCCCCHHHHHHHHHHHHHHHHHh
Q 020108 224 HCDFACLLYS---LLRKRLHWQKVHHMVHEAVEIETQFVCEAL-P--CALIGMNSSLMSQYIKFVADRLLVH 289 (331)
Q Consensus 224 H~~f~~~l~~---~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~L~~ 289 (331)
|+++...+++ .|.+.+-...--..+.=+|=. .-|+.+.- + .+.+|+++.+....|--..|..-.+
T Consensus 207 HGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa-TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~r 277 (357)
T PLN02508 207 HGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV-TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTAR 277 (357)
T ss_pred hHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH-HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHh
Confidence 9999998864 222221111111111111110 00111000 0 2567888777777777777776554
No 34
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=93.55 E-value=1.3 Score=43.35 Aligned_cols=114 Identities=15% Similarity=-0.041 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHhHHHH
Q 020108 114 ARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHS--SDSFAERLVGFACVEGIF 190 (331)
Q Consensus 114 ~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~--~~~~~~~lv~~~~lEgi~ 190 (331)
...|.....++||+|...-..+|-.-+. |+.+.++ .+...+.+-++. ..+....++.-.+-|..-
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~------------t~q~li~~G~d~~~~~~py~~~vYtSFQErAT 224 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK------------TIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 224 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHHHHH------------HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4557888899999999998777754332 4433111 111222222331 123345544334556543
Q ss_pred HHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch
Q 020108 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (331)
Q Consensus 191 f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~ 240 (331)
+. +..-+--++++.-=|-++++...|+.||.+|-.|.+.+...+.+-.+
T Consensus 225 ~V-SH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dP 273 (390)
T PLN00179 225 FI-SHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDP 273 (390)
T ss_pred HH-HhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCc
Confidence 31 22222224432113778999999999999999999999988775443
No 35
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=6 Score=34.75 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcHHHHHH
Q 020108 85 HVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE--NIPCVAQK 162 (331)
Q Consensus 85 ~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~--~~p~l~~k 162 (331)
.+|+.=..++.-.-+... .++..++++++|-.+...+.+|-.|...++.++..+..++..-+....+.. ..+..+.
T Consensus 27 e~L~~Ai~~E~eA~~fY~-~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (176)
T COG1633 27 ELLAIAIRGELEAIKFYE-ELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQP- 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCc-
Confidence 344444444433333443 477889999999999999999999999999999999765522111111111 0111111
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 163 AKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 163 ~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
+ .......++.+++- ..+++-.....|+....-. ..=++...++..+..||.-|.......++.+.
T Consensus 105 ---~-~~~~~~~~~~~~I~--~a~~~E~~t~~~Y~~~~~~--~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 105 ---G-KEMEKSVSYLEAIE--AAMEAEKDTIEFYEELLDE--LVNEEAKKLFKTIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred ---c-cccccchhHHHHHH--HHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 02222333333332 2223332333333332222 22267888999999999999998887776553
No 36
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=8.5 Score=35.86 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 020108 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY-IKDSKEKHRLFNA 152 (331)
Q Consensus 74 ~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~-~~d~~e~~~~f~~ 152 (331)
.||+.-|+++.+.+..++-.+-+......+ -....|.-|.+..++.-+-+|.-|..-+=.+.+++ +...++ .+..
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~e-W~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d---~la~ 86 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREGE-WLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGRED---DLAY 86 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCCc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH---HHHH
Confidence 588999999999999998888766655543 44577888999999999999999999999999999 544433 4433
Q ss_pred HhhcHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 153 IENIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 153 ~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
... + ..+.....+- .-+|+-.++ +. +++-++.++. .| .+.-.+-++.+...|++-|..|..++.
T Consensus 87 ~r~-g-----~~k~n~~~n~P~~~Wadt~~-~~-----fLvD~~~~~~l~~l-~~ssy~PlA~~a~k~~kEe~fHl~~~~ 153 (265)
T COG3396 87 LRD-G-----RHKRNSLFNLPTGDWADTIV-RG-----FLVDGAAIYQLEAL-ADSSYGPLARAAQKICKEEEFHLRHGK 153 (265)
T ss_pred Hhh-h-----HHHHHHHHcCCCccHHHHHH-HH-----HHHhHHHHHHHHHH-HhccchHHHHHHHHHHHhHHHHHHHHH
Confidence 321 1 1111111111 112433322 21 2233334333 22 234567799999999999999999999
Q ss_pred HHHHHHHhhchH--HHHHHHHHH----HHH------HHHHHHHhhcCCCcCCCC-HHHHHHHHHHHHHHHHHhCCCCCC
Q 020108 230 LLYSLLRKRLHW--QKVHHMVHE----AVE------IETQFVCEALPCALIGMN-SSLMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 230 ~l~~~l~~e~~~--~~i~~l~~e----ave------~E~~~~~~~~~~~~~Gl~-~~~~~~yi~y~an~~L~~lG~~~~ 295 (331)
..+..+..+..+ +.+.+.+.+ +++ .+..-..+ ..++.-.+ .+.-.+|++ ..+..|..+|++-.
T Consensus 154 ~~l~~l~~gT~~~~~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~--~~gI~~~~n~~Lrq~~i~-~~~~~l~~~gltvP 229 (265)
T COG3396 154 TWLKRLANGTEESRQMAQAALNRWWPRALEMFGPSASESELSAA--KWGIKVDPNDELRQAWIK-EVNEELRELGLTVP 229 (265)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHH--HcCCCCCCHHHHHHHHHH-HHHHHHHHhcCCCC
Confidence 998888755432 222222221 221 11111111 12344444 444555666 77888999997543
No 37
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=92.71 E-value=0.54 Score=44.40 Aligned_cols=44 Identities=25% Similarity=0.160 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHcC--CCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 192 ~s~F~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+|||...--+.++. .=|-++++..+++|||++|.+|--..++..
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 58888888888876 459999999999999999999876665443
No 38
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=92.61 E-value=0.58 Score=44.77 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHcCC--CCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 192 ~s~F~~~~~l~~~g~--l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+|||...--+.++.+ =|-+++++.+++|||++|.+|--..+...
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 588888888888765 89999999999999999999876665543
No 39
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=92.54 E-value=0.68 Score=43.96 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHcCCCCC--hHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g--~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+|||...--+.++.+=+. ++++..+++|||++|.+|--..+...
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 588888888888764455 99999999999999999876665543
No 40
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=91.77 E-value=3.6 Score=34.01 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=66.0
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
.++..-.-+++..++..|+..|..|++-|...+..+++.|. .|.. . ..+.....+.
T Consensus 25 ~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----------~~~~----~-----~~~~~~~l~~---- 80 (134)
T cd01041 25 EKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----------GPPI----G-----IGDTLENLKA---- 80 (134)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------CCCC----C-----cchHHHHHHH----
Confidence 34455567888999999999999999999999988876543 1100 0 0000000011
Q ss_pred HHhHHHH--HHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHH
Q 020108 184 ACVEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (331)
Q Consensus 184 ~~lEgi~--f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (331)
.+++-. ....+.-+...+....-..++..++.|..||..|......++.
T Consensus 81 -~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 81 -AIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 1123333344556666789999999999999999997766654
No 41
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=91.69 E-value=0.87 Score=43.48 Aligned_cols=44 Identities=27% Similarity=0.157 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHcC--CCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 192 ~s~F~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+|||...--+.++. .=|-++++..+++|||++|.+|--..+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 58888888888876 559999999999999999999876665443
No 42
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=89.72 E-value=0.94 Score=43.30 Aligned_cols=44 Identities=27% Similarity=0.166 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHcC--CCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 192 ~s~F~~~~~l~~~g--~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+|||...--+.++. .=|-+++++.+++|||++|.+|--..+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 58888888888876 559999999999999999999876665543
No 43
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=89.25 E-value=11 Score=30.79 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 143 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~ 143 (331)
..++..+++|+.+-.+...+-+|..|.+.+..++...+.+|
T Consensus 18 ~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 35677889999999999999999999999999999887654
No 44
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=88.19 E-value=12 Score=29.98 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~ 140 (331)
.++..+++++.+.++...+.+|-.|.+.+..++..++
T Consensus 19 ~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 19 ELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677889999999999999999999999999999885
No 45
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=86.91 E-value=16 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSK 144 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~ 144 (331)
..++....+++.+-.+..-+.+|-.|.+....++..++++|.
T Consensus 38 ~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~ 79 (154)
T cd07908 38 QHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPR 79 (154)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 344445578999999999999999999999999999987764
No 46
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=86.75 E-value=26 Score=32.31 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=106.2
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (331)
.....|.-|.+..++..+-+|.=|+..+-.+...+..+.++ -+. +..++. .-|+-.+.+.- ..+|+..++-
T Consensus 15 W~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~ed---~La-~~R~~~-~frn~~l~e~P--~gdwa~tv~r-- 85 (237)
T TIGR02158 15 WCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDED---TLA-FFRDEA-EFRNLRLTELP--NGDFALTIAR-- 85 (237)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHH-HhcChH-HhhhhHHHhCC--CCCHHHHHHH--
Confidence 44567888999999999999999999999999999653221 222 122221 11222222111 2245444332
Q ss_pred HhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhh
Q 020108 185 CVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262 (331)
Q Consensus 185 ~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~ 262 (331)
-+|+..+..+. .|. +.--+-++.+..+|++.|..|..++...+..|.... ++-++.+.+|++.=-.++..+
T Consensus 86 ----~~l~d~~~~~~l~~L~-~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt--~es~~r~Q~Ald~~wp~~~el 158 (237)
T TIGR02158 86 ----QFLYDAYKVLLLEALT-QSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLGT--EESHRRLQEALNELWPYTAEL 158 (237)
T ss_pred ----HHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 23445555443 222 455678999999999999999999999888776442 334444555555544444444
Q ss_pred cCC---------CcCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 020108 263 LPC---------ALIGMNSSLMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 263 ~~~---------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (331)
|+. .-++.+.+.+++--.-.....|..+|++-+
T Consensus 159 F~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~~P 200 (237)
T TIGR02158 159 FEAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTLP 200 (237)
T ss_pred cCCCchHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 421 112234556665545567777889998653
No 47
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=85.20 E-value=4.3 Score=32.69 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred HHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 020108 105 FLNDIQI--PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (331)
Q Consensus 105 l~~~i~~--~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (331)
++..+++ |+++..+..-+.+|..|...+..++.....+... .+......+........ ....++ ...+.
T Consensus 20 ~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~-~~~l~ 90 (137)
T PF02915_consen 20 LAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP---PFLEEKVEYSFFPKLEE-----ETDENL-EEALE 90 (137)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT---HCHCCCCCHCCCCTCCS-----SHHHHH-HHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc---chhhhhhhhhhcchhhh-----hhhHHH-HHHHH
Confidence 4444455 8899999999999999999999999887543211 10000000000000000 000111 11121
Q ss_pred HHH---hHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 020108 183 FAC---VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 231 (331)
Q Consensus 183 ~~~---lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l 231 (331)
..+ .+++.+|.- +++.---|...+.+..|++||..|......+
T Consensus 91 ~a~~~E~~~~~~Y~~------~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 91 MAIKEEKDAYEFYAE------LARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHTHHHHHHH------HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 223333222 2222234778899999999999999876655
No 48
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=81.89 E-value=17 Score=31.19 Aligned_cols=105 Identities=19% Similarity=0.143 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHH
Q 020108 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGI 189 (331)
Q Consensus 110 ~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi 189 (331)
.+++.+..+.-.+.+|--|.+..+..+..++.++.. ..| +-+. +....+...-+-.....|.-
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw--~~~y-----------v~~~~d~~~~L~~ni~aE~~ 113 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW--TAAY-----------IQSSGNLVADLRSNIAAESR 113 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC--CCcc-----------cCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999998765432 111 1111 11111111111111112211
Q ss_pred HHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 190 ~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
.-..+.-++.... + |++..++.+|..||..|..-...++..+
T Consensus 114 -Ai~~Y~~l~~~~~-D--p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 114 -ARLTYERLYEMTD-D--PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred -HHHHHHHHHHHcC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0111222222333 2 9999999999999999999887776643
No 49
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=73.36 E-value=14 Score=31.18 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=47.0
Q ss_pred HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------------------HHHHHHHHHHHHHHHHHHHH
Q 020108 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------------------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------------------~~~i~~l~~eave~E~~~~~ 260 (331)
++..++.-|.+.+.+..+++||..|......++..+-..+. ...+.++++.++..|.+-+.
T Consensus 39 ~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~ 118 (154)
T cd07908 39 HLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIA 118 (154)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHH
Confidence 44555677999999999999999999999998887653322 12356688889998887764
No 50
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=71.08 E-value=88 Score=28.97 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=91.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f 150 (331)
.|-.=+|---+.+..+-..|-.+|...-+..- ...+.+++|+.+.=..-++.+|+.|++.-..+++.+... =|
T Consensus 17 ~W~~~~p~~T~~~nalS~~fP~GE~ffi~svr-~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~------G~ 89 (253)
T PF10118_consen 17 HWIPGDPFATHFFNALSLLFPEGERFFIRSVR-RARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQ------GY 89 (253)
T ss_pred ccCCCChHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CC
Confidence 34333333334444444445666666555543 567888999999988888899999999988888766210 01
Q ss_pred HHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHH
Q 020108 151 NAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFA 228 (331)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~ 228 (331)
+ + .+.+........+.+..-.+...+|...+++|..-..-|=..+- .+...|.=|.+.++..|=.--|.=|.+.+
T Consensus 90 ~-~--~~~~~~~~~~~~~~l~~~~~~~~~La~taalEH~TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVA 166 (253)
T PF10118_consen 90 D-V--RPFLEKMEKLFLKFLEKRLSLKFQLAYTAALEHFTAVLAEWLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVA 166 (253)
T ss_pred C-C--cHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 11111111112222222122334444446788864432222221 11123555789999999999999999988
Q ss_pred HHHHHHHHh
Q 020108 229 CLLYSLLRK 237 (331)
Q Consensus 229 ~~l~~~l~~ 237 (331)
--+++.+..
T Consensus 167 fDvy~~~~g 175 (253)
T PF10118_consen 167 FDVYQAVGG 175 (253)
T ss_pred HHHHHHHcC
Confidence 888887775
No 51
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=70.76 E-value=33 Score=33.23 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=35.3
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e 145 (331)
.++....+|-....++..+.+|++|..+|++++..++. ||+.
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~ 218 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDG 218 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHH
Confidence 46666689999999999999999999999999998753 4443
No 52
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=67.98 E-value=3.6 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=17.4
Q ss_pred HHHHHhhcCCCcCCCCHHHHHHHHHHH
Q 020108 256 TQFVCEALPCALIGMNSSLMSQYIKFV 282 (331)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ 282 (331)
.+|+.-+..--..|++++++++|+++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455554444456799999999999874
No 53
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=67.16 E-value=36 Score=32.43 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 020108 105 FLNDI--QIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (331)
Q Consensus 105 l~~~i--~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e 145 (331)
+.... .+|-.+..++..+.+|++|..+|+.+++.++. +|+.
T Consensus 169 l~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~ 212 (297)
T cd01050 169 TARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDG 212 (297)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 44445 88999999999999999999999999988763 4444
No 54
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=65.64 E-value=32 Score=33.83 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=36.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e 145 (331)
..++....+|-+....+..+.+|++|..+|+++++.++. ||++
T Consensus 232 arlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 232 ARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 356666778998999999999999999999999998874 6665
No 55
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=63.76 E-value=1.6e+02 Score=29.25 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH-HHH
Q 020108 70 QHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSK-EKH 147 (331)
Q Consensus 70 ~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~-e~~ 147 (331)
.-|..+|.+-|..+.+++....-.+-.-.+... .+...+++--..-.+.....+|.+|.-+-.++|...++ |.. +-+
T Consensus 95 ~awqevPgE~r~~L~riIv~QgDtEpASVEQqr-~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~FG~dGreeAe 173 (471)
T TIGR03225 95 PAWQEVPGEYRSMLRRLIVIQGDTEPASVEQQR-HLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYFGRDGREEAE 173 (471)
T ss_pred chHhhCCHHHHHHHHHHHhhccCCCchhHHHHH-HhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccHHHHH
Confidence 369999999999999998765433322222221 23333444433334444558889999999999955544 322 212
Q ss_pred HHHHHHh---hcHHHHHHHHHHHHHhhch-HHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhh
Q 020108 148 RLFNAIE---NIPCVAQKAKWALDWIHSS-DSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG 222 (331)
Q Consensus 148 ~~f~~~~---~~p~l~~k~~~i~~~~~~~-~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~ 222 (331)
++...-. +.|. +...++.+ ..+ ...+.|+ ++-.. |-+.+.++++++--| ++...+.+...|.
T Consensus 174 ~LL~rrsGd~d~PR-------iL~AFN~~t~dW-lsffmFT~ftDRd----Gk~QL~alaeS~FdP-LaRt~rfMltEEa 240 (471)
T TIGR03225 174 ALLRRRSGDADNPR-------ILGAFNEKTPDW-LSFFMFTYFTDRD----GKMQLAALAESGFDP-LSRTCRFMLTEEA 240 (471)
T ss_pred HHHHhhcCCCCCcc-------hhhhccCCCccH-HHHhHhheeeccc----chhhHHHHHhcCCch-HhhhhHHHhhhhH
Confidence 2222111 1121 11222211 122 3334443 33332 444555666666444 6778899999999
Q ss_pred hHHHHHHHHHHHHH
Q 020108 223 LHCDFACLLYSLLR 236 (331)
Q Consensus 223 ~H~~f~~~l~~~l~ 236 (331)
.|.-+|-.=+..+.
T Consensus 241 hHmfvGetGv~rvi 254 (471)
T TIGR03225 241 HHMFVGESGVGRVI 254 (471)
T ss_pred hHhhhhhHHHHHHH
Confidence 99999875444333
No 56
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=62.40 E-value=27 Score=27.25 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcC
Q 020108 126 NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205 (331)
Q Consensus 126 ~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g 205 (331)
..|...|.++++.++.|++... ..+.+ .|...+-.++..........+...+-++..+|.+.....=...-.+.+.|
T Consensus 16 ~~H~~Lf~~~L~~~Gi~~~~~~-~~~~~--~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 16 RSHPELFRRFLRALGIDDEPGA-YRDPY--PPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRLG 92 (106)
T ss_dssp G-HHHHHHHHHHHTT-----TT--------HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHcCCCCcccc-ccccC--CHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHcC
Confidence 3699999999999987765310 11111 12222333333322222233344544456788875543222223455444
No 57
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=60.94 E-value=75 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.8
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~ 139 (331)
.+...+.+|.++..+.+.+.+|..|.+.|..+++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667899999999999999999999999998865
No 58
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=53.22 E-value=1.1e+02 Score=28.39 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhch-HHHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHH
Q 020108 157 PCVAQKAKWALDWIHSS-DSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (331)
Q Consensus 157 p~l~~k~~~i~~~~~~~-~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (331)
+.-+++.+|-. +.+. .....+++++ ..++++.--..-..+ ...=--|.........+-.|++|....+.++..
T Consensus 37 ~~~~D~~~~~~--Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i---~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~ 111 (281)
T PF00268_consen 37 DMSKDIKDWKK--LSEEEREAYKRILAFFAQLDSLVSENLLPNI---MPEITSPEIRAFLTFQAFMEAIHAESYSYILDS 111 (281)
T ss_dssp -GGGHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHh--CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555543 3322 2345566665 567776543322222 221123778888899999999999999999999
Q ss_pred HH
Q 020108 235 LR 236 (331)
Q Consensus 235 l~ 236 (331)
+.
T Consensus 112 l~ 113 (281)
T PF00268_consen 112 LG 113 (281)
T ss_dssp HS
T ss_pred hc
Confidence 87
No 59
>PF13668 Ferritin_2: Ferritin-like domain
Probab=52.07 E-value=1.3e+02 Score=24.50 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHH-------hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHH
Q 020108 86 VLAFFAASDGIVLENLAARFL-------NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPC 158 (331)
Q Consensus 86 ~la~l~~~D~~v~~~l~~~l~-------~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~ 158 (331)
+|.+-..++-+..+.+...+. ....+++.+.++...+.+|..|.+..+..+. +..+-.. --|+.
T Consensus 5 iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~-~~~~~------ 75 (137)
T PF13668_consen 5 ILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPP-PAYDF------ 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCC-Ccccc------
Confidence 445555555555555443333 3567889999999999999999999998886 3221000 01221
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHH
Q 020108 159 VAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (331)
Q Consensus 159 l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (331)
-..-+.++.+++.. -..+|.+.. +.|.-..-... =|.+..+..-|..+|..|......++
T Consensus 76 -------~~~~~~~~~~~L~~---A~~~E~~~~-~~Y~g~~~~~~---~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 76 -------PFDPFTDDASFLRL---AYTLEDVGV-SAYKGAAPQIE---DPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred -------ccCCCCCHHHHHHH---HHHHHHHHH-HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011223333211 123455421 22222211112 26789999999999999999777654
No 60
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=45.03 E-value=1.3e+02 Score=23.68 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLL 135 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~i 135 (331)
.++..+++|+++..+...+.+|..|.+.+..+
T Consensus 105 ~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 105 ELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888999989999999999998887654
No 61
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=44.86 E-value=24 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.0
Q ss_pred cchHHHhcCCHHHHHHHHHHHH
Q 020108 67 QDVQHWERLLDSEKHFISHVLA 88 (331)
Q Consensus 67 ~D~~d~~~L~~~Er~~~~~~la 88 (331)
+.+.+|..|++.+|..+...+.
T Consensus 25 dEI~~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILARLR 46 (51)
T ss_pred HHHHHHhhCCHHHHHHHHHHHH
Confidence 5678999999999998776554
No 62
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=42.09 E-value=1.4e+02 Score=24.67 Aligned_cols=58 Identities=16% Similarity=0.027 Sum_probs=43.9
Q ss_pred HcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 203 ~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
+..-+|+++..++-+..||..|..-....+..+-..|+ ...+.++++.+++.|...+.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~ 98 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPEMLENDLALEYEAIA 98 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 44458999999999999999999988877766543322 12467888888888886665
No 63
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=42.06 E-value=1.4e+02 Score=22.33 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 020108 110 QIPEARAFYGFQIAMENIHSEMY 132 (331)
Q Consensus 110 ~~~E~~~~l~~Q~~~E~iH~esY 132 (331)
.+++.+.++...+.+|..|...+
T Consensus 104 ~d~~~~~~~~~~~~~E~~H~~~~ 126 (130)
T cd00657 104 DDPELRRLLERILADEQRHAAWF 126 (130)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 64
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=41.68 E-value=2.4e+02 Score=24.58 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=62.8
Q ss_pred HHHhhh-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcHHHHHHHHHHHHHhh
Q 020108 96 IVLENL-AARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKHRLFNAIENIPCVAQKAKWALDWIH 171 (331)
Q Consensus 96 ~v~~~l-~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~---~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~ 171 (331)
.+++.+ ...++..-..|++.-.+-.++..|.+|+...-.++.-+. .|..+ .++.- ++
T Consensus 19 a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~e------------Nl~~a-------ie 79 (166)
T COG1592 19 AVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRE------------NLEEA-------IE 79 (166)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH------------HHHHH-------Hc
Confidence 344433 345666777889999999999999999999988887542 12111 11000 10
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 172 SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 172 ~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
++++ |--..|..|+-. ....| ....+.-++.+.|||.+|......++..+.
T Consensus 80 -GE~~----------e~~emyp~~ae~--A~~~g-~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 80 -GETY----------EITEMYPVFAEV--AEEEG-FKEAARSFRAAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -cchH----------HHHHhChHHHHH--HHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1110 000001111111 01112 466788899999999999998887776664
No 65
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=40.59 E-value=1.2e+02 Score=28.86 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 157 PCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 157 p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
|--+++.+|- +.-++...+.+.++++ +.++++.--.+-..+ ...=--|-...........|++|....+.++..+
T Consensus 40 ~~s~D~~dw~-~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~---~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 40 PLSNDLKDWK-KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL---MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred cccchHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334455552 2212223355666665 567777553322222 1111127788888999999999999999999987
Q ss_pred Hh
Q 020108 236 RK 237 (331)
Q Consensus 236 ~~ 237 (331)
..
T Consensus 116 ~~ 117 (324)
T PRK09614 116 CS 117 (324)
T ss_pred CC
Confidence 53
No 66
>PRK15022 ferritin-like protein; Provisional
Probab=39.23 E-value=1.8e+02 Score=25.33 Aligned_cols=58 Identities=7% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh-----------hch--HHHHHHHHHHHHHHHHHHHHh
Q 020108 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK-----------RLH--WQKVHHMVHEAVEIETQFVCE 261 (331)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~-----------e~~--~~~i~~l~~eave~E~~~~~~ 261 (331)
|+...| +||++.-+..=+..|.-|..- +++.+.. +|+ ..-+.+++..+.+.|+.....
T Consensus 30 ~~~~~~-L~GfA~ff~~qa~EEreHA~k---~~~yl~~rGg~v~l~~I~~P~~~~~s~~e~fe~al~hEk~vt~~ 100 (167)
T PRK15022 30 WCSEQS-LNGTATFLRAQAQSNVTQMMR---MFNFMKSAGATPIVKAIDVPGEKLNSLEELFQKTLEEYEQRSST 100 (167)
T ss_pred HHHhCC-ChhHHHHHHHHHHHHHHHHHH---HHHHHHHcCCceeeCCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 344555 999999999999999999874 3443432 121 123567777777777755543
No 67
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=38.91 E-value=2.1e+02 Score=23.13 Aligned_cols=96 Identities=15% Similarity=-0.022 Sum_probs=58.1
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
..+..-.-+++..++..|+..|..|++.|..++..+ |....+.+....... ....
T Consensus 25 ~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~~~~~~~le~a~~~E-----------------~~~~----- 79 (123)
T cd01046 25 RVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---SEDTKENLEMMLEGE-----------------AGAN----- 79 (123)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHhH-----------------HHHH-----
Confidence 344555668899999999999999999998766332 111011221111100 0000
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHH
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (331)
..+.-+...++.-....+...++.|.+||..|......++.
T Consensus 80 ---------~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 80 ---------EGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ---------HhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112222344455678889999999999999997776654
No 68
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=35.10 E-value=2.6e+02 Score=23.13 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc----------hHH
Q 020108 173 SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL----------HWQ 242 (331)
Q Consensus 173 ~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~----------~~~ 242 (331)
++.....+-.....|-...+--++.-.++.+. -+||++.-++..+.+|..|..-...-+..+-..+ ...
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~-~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~ 79 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDSK-GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFE 79 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccC
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020108 243 KVHHMVHEAVEIETQFVCEA 262 (331)
Q Consensus 243 ~i~~l~~eave~E~~~~~~~ 262 (331)
.+.+++..+.+.|.......
T Consensus 80 ~~~~~l~~al~~E~~~~~~~ 99 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESI 99 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHH
No 69
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=34.39 E-value=2.6e+02 Score=22.92 Aligned_cols=110 Identities=12% Similarity=-0.085 Sum_probs=67.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
....-+....++-.|+.+|-.|.+.....+..+++.|.-. .. +.+.. ..+.....+..+ -.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~-----~~---~~~~~--------~~~~~~~l~~~l---~~ 92 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQ-----RL---GKLRI--------GEDVPEMLENDL---AL 92 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----cC---CCCCc--------CCCHHHHHHHHH---HH
Confidence 4445678888999999999999999999999998766320 00 10000 001111111111 11
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
|. .....+--+.-.+....=+.++..++.+.+||..|..+...++..+.
T Consensus 93 E~-~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~ 141 (153)
T cd00907 93 EY-EAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLID 141 (153)
T ss_pred HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122223333444455689999999999999999999888877665
No 70
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=34.31 E-value=2.5e+02 Score=22.67 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 020108 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQ 257 (331)
Q Consensus 201 l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~ 257 (331)
.++.--+|+++..++.++..|..|......++.. .+ ..+.+.+..+++.|..
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~-~~~~~~le~a~~~E~~ 77 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VS-EDTKENLEMMLEGEAG 77 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-ccHHHHHHHHHHhHHH
Confidence 3455558999999999999999999866654422 11 4456666666666654
No 71
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=34.20 E-value=1.3e+02 Score=24.55 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=39.0
Q ss_pred HHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh---c--hHHHHHHHHHHHHHHHH
Q 020108 202 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR---L--HWQKVHHMVHEAVEIET 256 (331)
Q Consensus 202 ~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e---~--~~~~i~~l~~eave~E~ 256 (331)
++.-=++|++..++.++.+|..|..-....+..+-.. + +...+.+.+..+.+.|.
T Consensus 27 a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E~ 86 (134)
T cd01041 27 ARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGET 86 (134)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhhH
Confidence 4444489999999999999999998776666555322 1 12456677777777776
No 72
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=34.11 E-value=2.6e+02 Score=24.37 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.3
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh-----------ch--HHHHHHHHHHHHHHHHHHH
Q 020108 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR-----------LH--WQKVHHMVHEAVEIETQFV 259 (331)
Q Consensus 204 ~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-----------~~--~~~i~~l~~eave~E~~~~ 259 (331)
..=|||++.-++-=+.+|..|.. .+++.+... |+ ..-..++++.+++.|..-.
T Consensus 33 ~~~l~G~A~f~~~qa~EE~~H~~---k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt 98 (167)
T COG1528 33 SESLPGFAKFLRAQAQEELTHAM---KLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVT 98 (167)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHH
Confidence 45589999999999999999976 555555531 11 1235566666666665444
No 73
>PRK10304 ferritin; Provisional
Probab=34.08 E-value=1.9e+02 Score=24.88 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh--------ch--HHHHHHHHHHHHHHHHHHHH
Q 020108 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR--------LH--WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e--------~~--~~~i~~l~~eave~E~~~~~ 260 (331)
|+...| +||+++-+..=+.+|.-|..-...-+...-.. |+ ...+.+++..+.++|..-..
T Consensus 30 ~~~~~g-l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~ 99 (165)
T PRK10304 30 WCSYHT-FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQ 99 (165)
T ss_pred HHhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 455556 69999999999999999987433332222111 11 13366777777777775554
No 74
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=33.54 E-value=2.4e+02 Score=26.99 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhhc-hHHHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHH
Q 020108 157 PCVAQKAKWALDWIHS-SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (331)
Q Consensus 157 p~l~~k~~~i~~~~~~-~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (331)
|--+++.+|-. +.+ ...+..+++++ +.++++..-.+-..++.-. . -|..........--|++|....+.++.+
T Consensus 40 ~ls~D~~dw~~--Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~--~-~~e~~~~l~~~~~~E~iHs~sYs~il~t 114 (322)
T PRK13967 40 PLSNDLASWQT--LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA--V-TPHEEAVLTNMAFMESVHAKSYSSIFST 114 (322)
T ss_pred CchhhHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566632 332 23356676766 5678776644432222111 1 2556677888888999999999999998
Q ss_pred HHh
Q 020108 235 LRK 237 (331)
Q Consensus 235 l~~ 237 (331)
+..
T Consensus 115 l~~ 117 (322)
T PRK13967 115 LCS 117 (322)
T ss_pred hCC
Confidence 854
No 75
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=32.74 E-value=1.5e+02 Score=28.08 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=44.5
Q ss_pred HHhcCCCCCcccCcccchH-HHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 020108 52 KAQASFWTAEEVDLSQDVQ-HWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHS 129 (331)
Q Consensus 52 k~~~~~W~peeidl~~D~~-d~~-~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~ 129 (331)
.....-|+..-|.-+.|.. |.. ++..+.| ++..-.++.....+|.+|-.+++-+..|.+|.
T Consensus 122 ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~-----------------AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~ 184 (283)
T PF05067_consen 122 DSNGVPWTAAYVQASGDLIADLRSNIAAEQR-----------------ARLQYERLYEMTDDPGVKDMLSFLLAREIVHQ 184 (283)
T ss_dssp -TTS-B-BGGG----S-HHHHHHHHHHHHHH-----------------HHHHHHHHHTT---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 4455788888887777654 332 3332222 23334567888899999999999999999999
Q ss_pred HHHHHHHHHhc
Q 020108 130 EMYSLLLETYI 140 (331)
Q Consensus 130 esYs~il~~~~ 140 (331)
..|..-|+++.
T Consensus 185 ~~f~~ALe~l~ 195 (283)
T PF05067_consen 185 QQFGKALEELQ 195 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999884
No 76
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=32.53 E-value=4e+02 Score=24.56 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 176 FAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 176 ~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
....++++ ..++++.--..-..+.... --|-........+-+|++|....++++..+...
T Consensus 47 ~~~~~la~~~~~d~~v~~~~~~~~~~~~---~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~ 107 (288)
T cd01049 47 FIKRVLAFLAALDSIVGENLVELFSRHV---QIPEARAFYGFQAFMENIHSESYSYILDTLGKD 107 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555555 5667763322211111111 136777888899999999999999999988754
No 77
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=32.41 E-value=1.3e+02 Score=29.85 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred HhHHHHHHhHHHHHHHHHHcCCCCC-hHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-----------HHHHH--HHHHH
Q 020108 185 CVEGIFFSGSFCAIFWLKKRGLMPG-LTFSNELISRDEGLHCDFACLLYSLLRKRLH-----------WQKVH--HMVHE 250 (331)
Q Consensus 185 ~lEgi~f~s~F~~~~~l~~~g~l~g-~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-----------~~~i~--~l~~e 250 (331)
-.|.+.-|+||+..--.-.--++|| +..+++.|.+.-.+-...-..++.. +.|. .+.++ ..+.+
T Consensus 124 g~E~~RrygGFYGpTcVvDFAliPGSTsNVVN~IL~~~DIp~~hkqaiLaa--KSWGMNTSYg~G~~Fa~~iE~g~t~~e 201 (499)
T PF09959_consen 124 GKESARRYGGFYGPTCVVDFALIPGSTSNVVNQILKKTDIPVDHKQAILAA--KSWGMNTSYGIGDVFAHAIEEGKTLAE 201 (499)
T ss_pred hHHHHHHhcCccCCceeeeeeecCCchHHHHHHHHHhCCCcHHHHHHHHHh--cccCCccccccHHHHHHHHHcCCCHHH
Confidence 3699999999997754444568898 5667788888766555554444211 1111 12333 24778
Q ss_pred HHHHHHHHHHhhcC
Q 020108 251 AVEIETQFVCEALP 264 (331)
Q Consensus 251 ave~E~~~~~~~~~ 264 (331)
|++.|++-+..++.
T Consensus 202 A~~~Ei~~~q~iy~ 215 (499)
T PF09959_consen 202 AVKKEIKMMQFIYD 215 (499)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877763
No 78
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=32.37 E-value=72 Score=26.54 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhcHHHHH
Q 020108 126 NIHSEMYSLLLET-----YIKDSKEKHRLFNAIENIPCVAQ 161 (331)
Q Consensus 126 ~iH~esYs~il~~-----~~~d~~e~~~~f~~~~~~p~l~~ 161 (331)
++|+++.-.-+.- |+.|+++|.++|..+...|.+.+
T Consensus 86 AvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~E 126 (137)
T PF12165_consen 86 AVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFE 126 (137)
T ss_pred HHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHH
Confidence 6888887544433 33578999999999999998654
No 79
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=31.90 E-value=4.1e+02 Score=24.43 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=88.7
Q ss_pred HHHHHH---HHHHHHHHhhhHHHHHhcC--ChHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHhcCChHHHHHH
Q 020108 85 HVLAFF---AASDGIVLENLAARFLNDI--QIPEARAFYGFQIA-MEN---------IHSEMYSLLLETYIKDSKEKHRL 149 (331)
Q Consensus 85 ~~la~l---~~~D~~v~~~l~~~l~~~i--~~~E~~~~l~~Q~~-~E~---------iH~esYs~il~~~~~d~~e~~~~ 149 (331)
++++.+ +.+.++|. .+++.=.|.+ .+|+++.+.+...- +|+ -|=|.|-.-.+.++.|+...+..
T Consensus 24 HVfAVWDFMSLlK~LQ~-~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~f 102 (232)
T PF11251_consen 24 HVFAVWDFMSLLKALQR-DLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRF 102 (232)
T ss_pred hHHHHhHHHHHHHHHHH-hCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHH
Confidence 445554 44455553 3333222333 45788888777763 332 38899999999998888877666
Q ss_pred HHHHhhcHHHHHH-------------HHHHHHHhhchHHH-HHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHH--
Q 020108 150 FNAIENIPCVAQK-------------AKWALDWIHSSDSF-AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFS-- 213 (331)
Q Consensus 150 f~~~~~~p~l~~k-------------~~~i~~~~~~~~~~-~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~-- 213 (331)
...+.+-..+..- ..+..+.+.++.+- .-+.++|. =|.+ -..-|-.+. .+-+..++-...
T Consensus 103 l~~~~~g~~v~~Al~~~~~p~~~~~Fv~~Tf~~i~~~~~H~iAAaFtfG-REdl-IP~MF~~il--~~~~~~~~~~~~f~ 178 (232)
T PF11251_consen 103 LSLLREGTSVFEALQQADVPEPAKRFVRFTFEIIAEGKPHEIAAAFTFG-REDL-IPDMFRSIL--KDLNIPPGQLPTFR 178 (232)
T ss_pred HHHHHcCCCHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhc-cccc-hHHHHHHHH--HHhcCCccccHHHH
Confidence 6655543222111 11111122221110 01111110 0111 011122221 111222222222
Q ss_pred ---HHHHHhhhhhHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHH
Q 020108 214 ---NELISRDEGLHCDFACLLYSLLRKRLH--WQKVHHMVHEAVEIETQF 258 (331)
Q Consensus 214 ---i~~I~RDE~~H~~f~~~l~~~l~~e~~--~~~i~~l~~eave~E~~~ 258 (331)
-+.|--|..-|+-.+..++..|....+ .+++.+..++|++..+++
T Consensus 179 yYL~RHIElDgdeHgPlA~~ml~~Lcg~D~~kw~ea~~aa~~AL~~Ri~L 228 (232)
T PF11251_consen 179 YYLERHIELDGDEHGPLAMQMLEELCGDDPQKWQEAEQAAKEALEARIAL 228 (232)
T ss_pred HHHHhhhhcCCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 256888999999999999999986544 467888888888876654
No 80
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=31.19 E-value=47 Score=23.91 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHH
Q 020108 49 MYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVL 87 (331)
Q Consensus 49 lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~l 87 (331)
+.|+....+|.+.. ...|..+|+++|..++..+
T Consensus 39 ~LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 39 LLKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHH
Confidence 44677778899877 6778999999999998664
No 81
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=29.33 E-value=99 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 198 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 198 ~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
.|++ +.+.=......|+-|.++|-+|....+++++.+-.
T Consensus 19 ~ySi-~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg 57 (227)
T PF12902_consen 19 LYSI-KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGG 57 (227)
T ss_dssp HHHB-S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred Hccc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444 33444458899999999999999999999987753
No 82
>PF13668 Ferritin_2: Ferritin-like domain
Probab=28.85 E-value=3.1e+02 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL 136 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il 136 (331)
...+.+++|+.+..++..+..|+.|...+..++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888888888888999988876654
No 83
>PF11678 DUF3274: Protein of unknown function (DUF3274); InterPro: IPR021692 This bacterial family of proteins has no known function.
Probab=28.65 E-value=1.1e+02 Score=28.92 Aligned_cols=88 Identities=17% Similarity=0.379 Sum_probs=56.2
Q ss_pred CCcchhhhhhhhhc----ccccccCccccccC-CCce-eec--------ccCchHHHHHHHHHhcCCCCCcccCcccchH
Q 020108 5 KNETENEVNQREQG----EQEQEDQEPILMEQ-NQRF-CMF--------PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQ 70 (331)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~~~~ll~~~-~~~~-~~~--------pi~y~~~~~lykk~~~~~W~peeidl~~D~~ 70 (331)
..||-+|+..+-+. +...-+.-.|+... ..++ .-+ -+..|.+|++...+-.=-|....++...+..
T Consensus 177 R~eTp~E~r~~~~~~~~~~~~~S~HStIl~n~e~~r~V~AyDvAIG~~~~~~d~~~~~~L~~~ADWr~~~~~~~~~~~~~ 256 (285)
T PF11678_consen 177 REETPDEARKRMQQDPDALEQNSYHSTILTNPENHRWVTAYDVAIGQCKALDDPAFWELLRAMADWRMPENQFEKIKKLP 256 (285)
T ss_pred eccChHHHHHHHHhCcccccCCCccccccCCchhhhheeehhhhcccccccCCHHHHHHHHHhcccCCCcchhhHHHhcc
Confidence 35666666655333 32334455555432 2232 222 2467777777766665566667788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAA 92 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~ 92 (331)
.|.+|+++-|..+.....+...
T Consensus 257 ~~~rLs~~~q~Li~a~~~YY~~ 278 (285)
T PF11678_consen 257 NWGRLSPEAQALIKASHDYYQT 278 (285)
T ss_pred ccccCCHHHHHHHHHHHHHHhc
Confidence 9999999999998887666543
No 84
>PRK10635 bacterioferritin; Provisional
Probab=25.62 E-value=4.2e+02 Score=22.56 Aligned_cols=110 Identities=14% Similarity=-0.050 Sum_probs=59.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
....-+.....+-.++.+|-.|++....-+-.+++.|.-.. + ..+.....+. ..+..+-. .+.
T Consensus 33 ~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~-~-~~~~~g~~v~-------eml~~dl~-~E~------- 95 (158)
T PRK10635 33 KNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQD-L-GKLNIGEDVE-------EMLRSDLR-LEL------- 95 (158)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-C-CCCCCCCCHH-------HHHHHHHH-HHH-------
Confidence 33344445556666788999999999877777776664211 0 0000000110 11110000 011
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
+++ ..+.-...+++...=+.+...+.+|..||.-|..+.-..+..+.
T Consensus 96 ~ai---~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i~ 142 (158)
T PRK10635 96 EGA---KDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIG 142 (158)
T ss_pred HHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222223344455588999999999999999998877665543
No 85
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=24.90 E-value=4.5e+02 Score=22.65 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=92.2
Q ss_pred HHhcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 105 FLNDIQIPEAR-AFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 105 l~~~i~~~E~~-~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
+....++++.. .++.........+.+.+..+.+.++.+.++ ...+...|..+.-.+++.+.... .++...++++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~p~~~~y~~~l~~~a~~-~~~~~~l~al 125 (210)
T PF03070_consen 51 LASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISRED----LENIEPSPATRAYTDFLLSLAQT-GSLAEGLAAL 125 (210)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH----HHHSTC-HHHHHHHHHHHHHHHH-SSHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHhhhhhhHHHHHHHHHHHHhcc-CCHHHHHHHH
Confidence 44566777766 555555455566778888889998765554 44456678777777777765432 2366666666
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCC-CCC--hHHHHHHHHhhhh-hHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGL-MPG--LTFSNELISRDEG-LHCDFACLLYSLLRKRLH---WQKVHHMVHEAVEIET 256 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~-l~g--~~~~i~~I~RDE~-~H~~f~~~l~~~l~~e~~---~~~i~~l~~eave~E~ 256 (331)
..+|.+....+ -.+..... .++ ...-|+.=.-++- -++.....+++.+....+ .+++.+++..+++.|.
T Consensus 126 ~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E~ 201 (210)
T PF03070_consen 126 LPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELEY 201 (210)
T ss_dssp HHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 55555433322 12232222 232 4555555555554 346666667776665544 4678899999999999
Q ss_pred HHHHhhc
Q 020108 257 QFVCEAL 263 (331)
Q Consensus 257 ~~~~~~~ 263 (331)
.|-+..+
T Consensus 202 ~Fwd~a~ 208 (210)
T PF03070_consen 202 DFWDAAY 208 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987654
No 86
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=23.06 E-value=1.9e+02 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.044 Sum_probs=30.6
Q ss_pred HHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc
Q 020108 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL 239 (331)
Q Consensus 201 l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~ 239 (331)
++..-.-|.+.+++..++.+|..|..+...++..+...+
T Consensus 20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 444444577999999999999999999988887765443
No 87
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=22.95 E-value=4.6e+02 Score=22.12 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh-----------hchH---HHHHHHHHHHHHHHHHHHH
Q 020108 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRK-----------RLHW---QKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 206 ~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~-----------e~~~---~~i~~l~~eave~E~~~~~ 260 (331)
-+||+++-++.-+.+|.-|..- +++.+.. .|+. ..+.+++..+.+.|+.-..
T Consensus 35 ~l~g~a~~f~~~s~eE~~HA~~---l~~yi~~rgg~~~l~~i~~~~~~~~~~~~e~~e~al~~Ek~v~~ 100 (160)
T cd00904 35 ALKGVAHFFKEQAQEEREHAEK---FYKYQNERGGRVELQDIEKPPSDEWGGTLDAMEAALKLEKFVNQ 100 (160)
T ss_pred cchhHHHHHHHHHHHHHHHHHH---HHHHHHHCCCccccCcCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999874 4443332 1111 2366788888888876554
No 88
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=22.68 E-value=7.6e+02 Score=24.46 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=43.7
Q ss_pred cchHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020108 67 QDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLA---ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (331)
Q Consensus 67 ~D~~d~~-~L~~~Er~~~~~~la~l~~~D~~v~~~l~---~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~ 140 (331)
.++.+|- +-.+..+..+...+..+++++++.--... ..|...=.-|-........+-+|++|..+...+++++.
T Consensus 220 ~~k~~~~~~~~~~~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~ 297 (410)
T PRK12759 220 TDKIDFMMDADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYC 297 (410)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455663 23333444455555677777876542221 12222212244455677778999999999999999874
No 89
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=22.48 E-value=6.5e+02 Score=23.64 Aligned_cols=125 Identities=15% Similarity=-0.013 Sum_probs=70.0
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
...+.+.+|..+-=..-++.+|++|++.-+.+.+-+.. . . +...+.+..+.+.+..-+....+-.+. +++
T Consensus 61 a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a---~----~--~p~~e~~~~r~erll~~~~~~~~r~~q-~a~ 130 (280)
T COG3687 61 AYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDA---Q----G--TPFAEQIAWRFERLLGESPRGSPRLEQ-VAI 130 (280)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----C--CchHHHHHHHHHHHhhhcCCCCcHHHH-HHH
Confidence 35566777766666666778999999998888876621 0 0 000112222222222222112121122 333
Q ss_pred -HHhHHHHHHhHHHHHH--HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 184 -ACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 184 -~~lEgi~f~s~F~~~~--~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
.++|-.-..-+=.++- -+...|-=|...+.-+|=.+.|.-|...+--++.++...
T Consensus 131 ~aAlEHfTA~ma~~il~~~~l~~~~~dP~m~~LwRWHa~EE~EHkaVAyDv~~~v~g~ 188 (280)
T COG3687 131 IAALEHFTAVMAEWILEHPQLLLVGADPVMLDLWRWHAAEEVEHKAVAYDVFKHVRGG 188 (280)
T ss_pred HHHHHHHHHHHHHHHhcCcchhccCCCcHHHHHHHHhhHHHhhhHHHHHHHHHHhccc
Confidence 4567642222211111 011234557889999999999999999988888777644
No 90
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=21.99 E-value=2.4e+02 Score=21.46 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHhcCChHHHHHHH
Q 020108 74 RLLDSEKHFISHVLAFFAA---SDGIVLENLAARFLNDIQIPEARAFY 118 (331)
Q Consensus 74 ~L~~~Er~~~~~~la~l~~---~D~~v~~~l~~~l~~~i~~~E~~~~l 118 (331)
.||+.||..+...|--+-. .|+++ ..+.+...+|+-+..+
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rnvd~Li-----~~v~pVLDtPaK~~iw 57 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRNIDTLI-----VDVYPVLDTPAKQVIW 57 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhccHHHHH-----hhhhhhcCCHHHHHHH
Confidence 5999999999888754422 22222 2355566677665543
No 91
>PF02972 Phycoerythr_ab: Phycoerythrin, alpha/beta chain; InterPro: IPR004228 Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels []. Phycoerythrin (PE) 545 is a heterodimeric of alpha(1)alpha(2)betabeta subunits. Each alpha subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that probably acts as the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction centre [].; GO: 0030089 phycobilisome; PDB: 1XG0_B 1QGW_B 1XF6_B.
Probab=21.02 E-value=37 Score=23.96 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=6.7
Q ss_pred ccccccccccchhhcCCC
Q 020108 313 FLLSGCIRVPEEVQCGKS 330 (331)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~ 330 (331)
|--|||.|.|.|-+=+|+
T Consensus 8 FDhRGC~r~~kEytG~ka 25 (57)
T PF02972_consen 8 FDHRGCDRAPKEYTGPKA 25 (57)
T ss_dssp EE-TT-SS---S--S---
T ss_pred ecccccCCCcccccCCCC
Confidence 667999999998776553
Done!