Query 020108
Match_columns 331
No_of_seqs 117 out of 1103
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olj_A Ribonucleoside-diphosph 100.0 1.5E-75 5E-80 548.7 30.2 280 23-304 3-283 (286)
2 2o1z_A Ribonucleotide reductas 100.0 4.4E-74 1.5E-78 544.2 29.4 281 21-303 25-305 (311)
3 2p1i_A Ribonucleotide reductas 100.0 1.2E-73 4.2E-78 548.9 25.7 286 24-311 29-315 (349)
4 1jk0_B RNR Y4, ribonucleoside- 100.0 2.2E-74 7.6E-79 553.3 18.5 293 16-311 15-309 (345)
5 1h0o_A Ribonucleoside-diphosph 100.0 5.8E-72 2E-76 542.9 33.2 289 21-311 66-356 (390)
6 1jk0_A RNR Y2, ribonucleoside- 100.0 4.7E-72 1.6E-76 546.8 27.3 293 17-311 87-382 (419)
7 4a58_A Ribonucleoside-diphosph 100.0 2.2E-71 7.4E-76 528.2 27.4 286 20-308 10-301 (324)
8 1syy_A Ribonucleoside-diphosph 100.0 2E-70 6.8E-75 526.9 33.1 288 21-311 13-324 (346)
9 2rcc_A Ribonucleoside-diphosph 100.0 1.2E-69 4E-74 521.7 32.3 286 24-311 18-319 (346)
10 3mjo_A Ribonucleotide reductas 100.0 1.5E-69 5.1E-74 510.1 30.7 272 34-310 16-296 (296)
11 1mxr_A Ribonucleotide reductas 100.0 2.3E-68 7.9E-73 517.4 34.5 284 22-309 11-339 (375)
12 3n37_A Ribonucleoside-diphosph 100.0 2.3E-67 8E-72 500.1 31.8 275 32-311 5-288 (319)
13 4dr0_A Ribonucleoside-diphosph 100.0 3.2E-67 1.1E-71 504.1 31.0 275 32-310 25-312 (350)
14 3dhz_A Ribonucleotide reductas 100.0 7E-67 2.4E-71 498.6 30.9 273 34-311 17-298 (329)
15 3ee4_A Probable ribonucleoside 100.0 3.5E-60 1.2E-64 451.0 24.7 268 23-302 12-298 (323)
16 2inc_A Toluene, O-xylene monoo 98.3 4.3E-05 1.5E-09 75.9 19.2 221 71-295 80-313 (491)
17 1mty_D Methane monooxygenase h 98.0 0.00061 2.1E-08 67.8 21.1 221 71-295 77-315 (512)
18 3pvt_A Phenylacetic acid degra 97.8 0.011 3.9E-07 55.1 23.6 204 74-295 24-243 (311)
19 2inc_B Toluene, O-xylene monoo 97.7 0.0082 2.8E-07 56.4 22.4 214 72-291 103-322 (322)
20 3ge3_A Toluene-4-monooxygenase 97.6 0.0014 4.8E-08 64.9 16.5 222 71-296 81-315 (500)
21 2uw1_A Desaturase, plastid del 97.6 0.0076 2.6E-07 56.7 20.2 164 56-240 35-223 (338)
22 1mhy_B Methane monooxygenase h 97.2 0.049 1.7E-06 52.5 20.5 220 71-295 135-381 (395)
23 3u52_C Phenol hydroxylase comp 97.1 0.17 5.9E-06 47.5 22.9 215 71-294 107-328 (333)
24 3ge3_B Toluene-4-monooxygenase 97.1 0.037 1.3E-06 52.0 18.2 165 72-239 107-276 (327)
25 3u52_A Phenol hydroxylase comp 97.0 0.064 2.2E-06 53.3 19.6 214 72-296 86-319 (511)
26 1za0_A Possible acyl-[acyl-car 96.8 0.022 7.7E-07 52.1 13.4 172 50-243 25-211 (275)
27 1mty_B Methane monooxygenase h 96.7 0.11 3.9E-06 49.7 18.5 220 71-294 127-370 (384)
28 2oc5_A Hypothetical protein; D 96.6 0.28 9.6E-06 42.3 22.4 196 76-294 28-231 (244)
29 3pf7_A Benzoyl-COA oxygenase c 96.5 0.0092 3.1E-07 57.6 8.9 157 72-237 98-256 (481)
30 3chh_A P-aminobenzoate N-oxyge 96.4 0.16 5.6E-06 47.7 17.5 172 56-241 58-247 (336)
31 1rcw_A CT610, CADD; iron, DI-i 93.8 3 0.0001 36.1 21.6 150 105-263 61-219 (231)
32 1zpy_A Hypothetical protein NE 91.9 2.7 9.2E-05 32.0 11.0 68 73-145 11-78 (95)
33 3bjd_A Putative 3-oxoacyl-(acy 90.6 9.1 0.00031 35.5 15.7 152 104-263 162-323 (332)
34 1otk_A Protein PAAC, phenylace 83.6 24 0.00081 31.5 19.8 191 84-293 6-210 (249)
35 3k6c_A Uncharacterized protein 83.4 13 0.00044 28.2 11.0 68 73-145 11-78 (95)
36 1za0_A Possible acyl-[acyl-car 81.1 10 0.00036 34.4 10.2 42 104-145 168-210 (275)
37 3dde_A TENA/THI-4 protein, dom 79.5 30 0.001 30.0 17.2 148 107-262 64-217 (239)
38 2fzf_A Hypothetical protein; s 75.3 32 0.0011 28.1 11.6 134 86-237 24-163 (175)
39 3qhb_A Symerythrin, ORF180; fo 70.0 49 0.0017 27.9 13.1 119 104-236 49-176 (179)
40 1yuz_A Nigerythrin; rubrythrin 69.6 53 0.0018 28.1 12.3 113 105-238 53-166 (202)
41 2qcx_A Transcriptional activat 66.2 70 0.0024 28.3 22.2 150 105-264 85-241 (263)
42 3b5o_A CADD-like protein of un 64.4 77 0.0026 28.1 16.0 141 112-262 72-225 (244)
43 3oql_A TENA homolog; transcrip 59.7 96 0.0033 27.6 14.2 142 112-263 89-245 (262)
44 2uw1_A Desaturase, plastid del 58.8 48 0.0016 30.9 9.4 37 104-140 183-219 (338)
45 2a2m_A Hypothetical protein BT 58.2 98 0.0034 27.3 16.3 142 106-264 106-250 (258)
46 1o9i_A Pseudocatalase; oxidore 57.1 42 0.0014 30.2 8.4 121 109-237 49-194 (266)
47 2hz8_A De novo designed DIIRON 54.2 32 0.0011 27.0 6.2 49 208-260 61-109 (115)
48 1nfv_A Bacterioferritin; 24 su 50.4 1E+02 0.0034 25.0 12.8 107 110-236 41-147 (179)
49 3k6c_A Uncharacterized protein 47.5 78 0.0027 23.8 7.2 54 176-235 20-74 (95)
50 1o9i_A Pseudocatalase; oxidore 45.3 1.2E+02 0.004 27.2 9.4 68 55-139 123-192 (266)
51 3ez0_A Uncharacterized protein 43.5 1.7E+02 0.0057 25.6 20.2 198 77-293 10-224 (225)
52 2fzf_A Hypothetical protein; s 43.3 1.2E+02 0.0042 24.5 8.8 55 84-139 107-161 (175)
53 2v8t_A Manganese-containing ps 42.4 1.4E+02 0.0048 27.2 9.6 70 54-140 129-200 (302)
54 1zpy_A Hypothetical protein NE 41.2 1E+02 0.0035 23.2 7.0 55 175-235 19-74 (95)
55 3pwf_A Rubrerythrin; non heme 40.8 1.5E+02 0.0052 24.4 13.6 101 103-237 29-129 (170)
56 3qb9_A Bacterioferritin, BFR; 39.2 1.5E+02 0.005 23.8 11.4 109 108-236 36-144 (174)
57 2gm8_A TENA homolog/THI-4 thia 37.4 1.9E+02 0.0064 24.5 19.0 144 105-263 66-218 (221)
58 4dr0_A Ribonucleoside-diphosph 36.7 2.4E+02 0.0082 26.0 10.5 112 175-292 74-189 (350)
59 2qqy_A Sigma B operon; dodecam 34.6 1.5E+02 0.0053 22.6 11.5 100 112-232 42-141 (149)
60 3uno_A Probable bacterioferrit 34.3 1.9E+02 0.0065 24.1 8.7 34 200-234 35-68 (189)
61 4di0_A Rubrerythrin; ssgcid, s 34.0 1.8E+02 0.0061 23.2 13.4 104 104-233 36-140 (144)
62 3oj5_A Ferritin family protein 32.9 2E+02 0.007 23.5 8.7 59 201-260 36-104 (189)
63 2qzc_A Transcriptional activat 32.1 2.2E+02 0.0077 23.7 18.2 137 107-264 64-208 (214)
64 3uoi_A Bacterioferritin, BFR; 29.4 1.3E+02 0.0043 23.8 6.5 74 189-262 21-103 (161)
65 1j30_A 144AA long hypothetical 29.0 2.1E+02 0.0071 22.4 14.7 106 105-236 33-141 (144)
66 1lko_A Rubrerythrin all-iron(I 28.9 2.5E+02 0.0086 23.3 11.8 112 104-237 32-144 (191)
67 3gvy_A Bacterioferritin; iron 28.0 2E+02 0.0069 22.5 7.5 58 203-260 33-99 (161)
68 3mjo_A Ribonucleotide reductas 27.8 1.2E+02 0.004 27.4 6.5 61 175-238 63-124 (296)
69 1xg0_B Phycoerythrin alpha-2 c 26.8 20 0.00069 25.1 0.9 18 313-330 14-31 (67)
70 1yuz_A Nigerythrin; rubrythrin 26.7 2.7E+02 0.0092 23.5 8.4 59 201-259 53-120 (202)
71 4am5_A Bacterioferritin; metal 26.4 2.4E+02 0.0082 22.3 12.4 110 107-236 33-142 (159)
72 2o1z_A Ribonucleotide reductas 25.7 1.2E+02 0.0043 27.5 6.4 60 175-237 85-145 (311)
73 3hl1_A Ferritin like protein; 24.9 1.5E+02 0.0052 27.2 6.7 39 197-237 32-70 (317)
74 1xg0_A Phycoerythrin alpha-3 c 24.3 24 0.00081 25.4 0.9 18 313-330 14-31 (76)
75 3olj_A Ribonucleoside-diphosph 24.1 1.4E+02 0.0047 26.8 6.3 60 175-237 61-121 (286)
76 1nfv_A Bacterioferritin; 24 su 23.4 1.6E+02 0.0055 23.7 6.2 56 205-260 40-104 (179)
77 2y3q_A Bacterioferritin; metal 23.4 1.9E+02 0.0065 22.4 6.5 57 204-260 34-99 (158)
78 3r15_A Factor H binding protei 23.2 82 0.0028 23.5 3.7 33 266-303 38-70 (93)
79 2y3q_A Bacterioferritin; metal 23.2 2.6E+02 0.0089 21.6 13.8 109 108-236 34-142 (158)
80 4am5_A Bacterioferritin; metal 22.5 1.6E+02 0.0053 23.5 5.8 56 205-260 35-99 (159)
81 3n37_A Ribonucleoside-diphosph 21.9 1.2E+02 0.0041 27.6 5.5 61 175-238 54-115 (319)
82 3dhz_A Ribonucleotide reductas 21.5 1.2E+02 0.0042 27.7 5.5 61 175-238 64-125 (329)
83 3bvf_A Ferritin; iron storage, 21.2 2E+02 0.0068 23.6 6.4 57 204-260 47-113 (181)
84 1udd_A Transcriptional regulat 20.9 3.7E+02 0.013 22.5 17.6 139 111-263 65-212 (226)
85 1vjx_A Putative ferritin-like 20.4 3.2E+02 0.011 21.5 8.7 35 104-138 121-155 (157)
86 2ims_A Apoptosis regulator BAK 20.0 3.6E+02 0.012 22.0 8.2 22 124-145 70-91 (171)
87 3qb9_A Bacterioferritin, BFR; 20.0 2.4E+02 0.0081 22.5 6.5 57 204-260 36-101 (174)
No 1
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=1.5e-75 Score=548.71 Aligned_cols=280 Identities=64% Similarity=1.105 Sum_probs=270.8
Q ss_pred ccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020108 23 EDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (331)
Q Consensus 23 ~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~ 102 (331)
+++|+||.+|++|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.
T Consensus 3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~ 82 (286)
T 3olj_A 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLV 82 (286)
T ss_dssp STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hHHHHHHHH
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLV 181 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv 181 (331)
+.+++.++.||+++|+++|+++|+||+++||+++++++.||++++++|+++.++|.+++|++|+.+++++ +.+++++++
T Consensus 83 ~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~~lv 162 (286)
T 3olj_A 83 ERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 162 (286)
T ss_dssp HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999975 356889999
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh
Q 020108 182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCE 261 (331)
Q Consensus 182 ~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~ 261 (331)
+++++||++|+|||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++++++++|++++++||++|++|+.+
T Consensus 163 a~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eave~E~~~~~~ 242 (286)
T 3olj_A 163 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE 242 (286)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc
Q 020108 262 ALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI 304 (331)
Q Consensus 262 ~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~ 304 (331)
+++++++|||.+++++||+|+||+||++||++++|++ .||+
T Consensus 243 ~l~~~~~Gl~~~~~~~yi~y~An~~L~~lG~~~~f~~--~nP~ 283 (286)
T 3olj_A 243 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV--ENPF 283 (286)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHHHHHTCCCSSCC--CCCC
T ss_pred HcCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCC
Confidence 9988999999999999999999999999999999975 4664
No 2
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=4.4e-74 Score=544.17 Aligned_cols=281 Identities=63% Similarity=1.077 Sum_probs=264.9
Q ss_pred ccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 020108 21 EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (331)
Q Consensus 21 ~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~ 100 (331)
+.+++|+||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 25 ~~~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~ 104 (311)
T 2o1z_A 25 SKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLEN 104 (311)
T ss_dssp TTGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHC-------
T ss_pred hhhhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHH
Q 020108 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180 (331)
Q Consensus 101 l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~l 180 (331)
+++.+++.++.||+++|+++|+++|+||+++||+++++++.|+.+++++|+++.++|.+++|++|+.+++++++++++++
T Consensus 105 l~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~l 184 (311)
T 2o1z_A 105 LASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERI 184 (311)
T ss_dssp CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSSTTSCHHHHH
T ss_pred hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCccHHHHHH
Confidence 98889999999999999999999999999999999999988999999999999999999999999999998776789999
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 020108 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 181 v~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~ 260 (331)
++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|.+|++
T Consensus 185 va~~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~eave~E~~~~~ 264 (311)
T 2o1z_A 185 VANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFIC 264 (311)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHTTBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCc
Q 020108 261 EALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKG 303 (331)
Q Consensus 261 ~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p 303 (331)
++++.+++||+.+.+++||+|+||++|++||++++|++ .||
T Consensus 265 ~~~~~~~~Gl~~~~~~~yi~y~an~~L~~LG~~~~y~~--~nP 305 (311)
T 2o1z_A 265 ESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHA--KNP 305 (311)
T ss_dssp TTBCCTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC--CCC
T ss_pred HHccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCC
Confidence 99998999999999999999999999999999999986 555
No 3
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=1.2e-73 Score=548.94 Aligned_cols=286 Identities=61% Similarity=1.023 Sum_probs=250.3
Q ss_pred cCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 020108 24 DQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAA 103 (331)
Q Consensus 24 ~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~ 103 (331)
.+++||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++++
T Consensus 29 ~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~~ 108 (349)
T 2p1i_A 29 SNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLAS 108 (349)
T ss_dssp ------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCHH
T ss_pred ccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
.+++.++.||+++|+++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.++++++++++++++++
T Consensus 109 ~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva~ 188 (349)
T 2p1i_A 109 KFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVAN 188 (349)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999998777899999999
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhc
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL 263 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~ 263 (331)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.+++
T Consensus 189 ~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~l 268 (349)
T 2p1i_A 189 ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESL 268 (349)
T ss_dssp HHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCCCc
Q 020108 264 PCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGLFF 311 (331)
Q Consensus 264 ~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~~~ 311 (331)
+.+++||+.+++++||+|+||+||++||++++|++ .||+ .+++++.
T Consensus 269 ~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~--~nP~~wm~~~~~ 315 (349)
T 2p1i_A 269 PCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHS--KNPFNWMDLISL 315 (349)
T ss_dssp CSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC--CCSCCC------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCChHHHHHhcc
Confidence 89999999999999999999999999999999985 7887 5777665
No 4
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=2.2e-74 Score=553.31 Aligned_cols=293 Identities=40% Similarity=0.752 Sum_probs=251.2
Q ss_pred hhcccccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 020108 16 EQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDG 95 (331)
Q Consensus 16 ~~~~~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~ 95 (331)
..++.+.+.++|||+||++|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|+
T Consensus 15 ~~~~~~~~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~ 94 (345)
T 1jk0_B 15 RHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDN 94 (345)
T ss_dssp HHHHHHHTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC----
T ss_pred hHhhhhhhhcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hH
Q 020108 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SD 174 (331)
Q Consensus 96 ~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~ 174 (331)
+|++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.||.++ ++|+++.++|.+++|++|+.+++++ +.
T Consensus 95 iv~~nl~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~-~~f~~~~~~p~l~~K~~~i~~~~~~~~~ 173 (345)
T 1jk0_B 95 LVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI-PLFKEIANLPEVKHKAAFIERWISNDDS 173 (345)
T ss_dssp -----CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS-CSGGGGCSCHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHhhCHHHHHHHHHHHHHHhCCcH
Confidence 999999989999999999999999999999999999999999998788888 8999999999999999999999974 55
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 020108 175 SFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEI 254 (331)
Q Consensus 175 ~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~ 254 (331)
++++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++
T Consensus 174 ~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~v~~l~~eave~ 253 (345)
T 1jk0_B 174 LYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEI 253 (345)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCCCc
Q 020108 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGLFF 311 (331)
Q Consensus 255 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~~~ 311 (331)
|++|++++++++++||+.+++++||+|+||+||++||++++|++ .||+ .+++++.
T Consensus 254 E~~~~~~~l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~--~nP~~wm~~~~~ 309 (345)
T 1jk0_B 254 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNA--VNPFEFMEDVAT 309 (345)
T ss_dssp HHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCHHHHHHhcc
Confidence 99999999989999999999999999999999999999999985 8887 5777654
No 5
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=5.8e-72 Score=542.91 Aligned_cols=289 Identities=62% Similarity=1.079 Sum_probs=274.3
Q ss_pred ccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 020108 21 EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (331)
Q Consensus 21 ~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~ 100 (331)
..+.+++||+||+.|++++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 66 ~~~~~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~vla~fa~~Dsiv~~n 145 (390)
T 1h0o_A 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNEN 145 (390)
T ss_dssp CSCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hHHHHHH
Q 020108 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAER 179 (331)
Q Consensus 101 l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~ 179 (331)
+++.+++.++.||+++|+++|+++|+||+++||+|+++++.|+.+++++|+++.++|.|++|++|+.+++++ +.+++++
T Consensus 146 l~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~~~~~~~~ 225 (390)
T 1h0o_A 146 LVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGER 225 (390)
T ss_dssp HHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccchhHHHH
Confidence 998999999999999999999999999999999999999989999999999999999999999999999975 4568999
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 020108 180 LVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFV 259 (331)
Q Consensus 180 lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~ 259 (331)
+++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|.+|+
T Consensus 226 lva~~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~~~v~el~~eave~E~~~~ 305 (390)
T 1h0o_A 226 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCCCc
Q 020108 260 CEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGLFF 311 (331)
Q Consensus 260 ~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~~~ 311 (331)
.+++|.+++||+.+++++||+|+||++|++||++++|++ .||+ .++.++.
T Consensus 306 ~~~~~~~~iGl~~~~~~~YI~y~Anr~L~~LG~~~~y~~--~NP~~wm~~~s~ 356 (390)
T 1h0o_A 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRV--ENPFDFMENISL 356 (390)
T ss_dssp HTTSCGGGGTCCHHHHHHHHHHHHHHHHHHTTCCCSSCC--CCSCGGGC----
T ss_pred HHhccCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCChHHHHhhcc
Confidence 999999999999999999999999999999999999985 7887 5777664
No 6
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=4.7e-72 Score=546.81 Aligned_cols=293 Identities=57% Similarity=0.999 Sum_probs=278.7
Q ss_pred hcccccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHh-cCCHHHHHHHHHHHHHHHHHHH
Q 020108 17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDG 95 (331)
Q Consensus 17 ~~~~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~-~L~~~Er~~~~~~la~l~~~D~ 95 (331)
.++.+.+++++||++|++||+++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|+++|+
T Consensus 87 ~~~~~~~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~~dw~~~Lt~~Er~~~~~vLa~fa~~Ds 166 (419)
T 1jk0_A 87 HKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDG 166 (419)
T ss_dssp HHHHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhhhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 366788899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hH
Q 020108 96 IVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SD 174 (331)
Q Consensus 96 ~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~ 174 (331)
+|++++++.+++.++.||+++|+++|+++|+||+++||+|+++++.||.+++++|+++.++|.|++|++|+.+++++ +.
T Consensus 167 iv~~nl~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~~~~ 246 (419)
T 1jk0_A 167 IVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADA 246 (419)
T ss_dssp HHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhccch
Confidence 99999988899999999999999999999999999999999999989999999999999999999999999999975 45
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 020108 175 SFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEI 254 (331)
Q Consensus 175 ~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~ 254 (331)
++++++++++++|||+|+|+|+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++
T Consensus 247 ~~~~~lva~~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~e~v~el~~eave~ 326 (419)
T 1jk0_A 247 LFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEI 326 (419)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc-ccCCCCc
Q 020108 255 ETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI-ARAGLFF 311 (331)
Q Consensus 255 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~-~~~~~~~ 311 (331)
|.+|+.++++++++||+.+++++||+|+||++|++||++++|++ .||+ .+++++.
T Consensus 327 E~~~~~~~lp~~liGln~~~~~~YI~Y~Anr~L~~LG~~~~y~~--~NP~~wm~~is~ 382 (419)
T 1jk0_A 327 EQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV--ENPFDFMENISL 382 (419)
T ss_dssp HHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCC--CCCCGGGGC---
T ss_pred HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCChHHHHHhcc
Confidence 99999999999999999999999999999999999999999985 7887 5677665
No 7
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=2.2e-71 Score=528.21 Aligned_cols=286 Identities=25% Similarity=0.367 Sum_probs=253.1
Q ss_pred cccccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 020108 20 QEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLE 99 (331)
Q Consensus 20 ~~~~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~ 99 (331)
++...-+++||+|+.|+. +|++||++|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++
T Consensus 10 ~~~~~~~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~~~~~~D~iv~~ 88 (324)
T 4a58_A 10 LESTSLYKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNF 88 (324)
T ss_dssp ---------------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhHHHHHhCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 344566899999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHH
Q 020108 100 NLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAE 178 (331)
Q Consensus 100 ~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~ 178 (331)
++. .+++.++.||+++|+++|+++|+||+++||+|+++++. ||.+++++|+++.++|.+++|++|+.+++++.+++++
T Consensus 89 nl~-~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~ 167 (324)
T 4a58_A 89 NID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPE 167 (324)
T ss_dssp HHH-HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHCSSHHH
T ss_pred hHH-HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCchhHHH
Confidence 986 69999999999999999999999999999999999974 7899999999999999999999999999987778899
Q ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHH
Q 020108 179 RLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK---RLHWQKVHHMVHEAVEIE 255 (331)
Q Consensus 179 ~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~---e~~~~~i~~l~~eave~E 255 (331)
++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+ ++..++|++++++||++|
T Consensus 168 ~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~p~~~~v~~i~~eave~E 247 (324)
T 4a58_A 168 KILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVE 247 (324)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874 577899999999999999
Q ss_pred HHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccC--CccccCC
Q 020108 256 TQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACV--KGIARAG 308 (331)
Q Consensus 256 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~--~p~~~~~ 308 (331)
++|++++++ ++.|||.+++++||+|+||+||++||++++|++..+ ||+...+
T Consensus 248 ~~~~~~~~~-~~~~ln~~~~~~Yi~y~An~~L~~LG~~~~y~~~~p~~np~~~~~ 301 (324)
T 4a58_A 248 TAFIEARGE-GVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMT 301 (324)
T ss_dssp HHHHHHHST-TCTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCC---------
T ss_pred HHHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcchhhc
Confidence 999999998 678999999999999999999999999999997543 7776654
No 8
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=2e-70 Score=526.86 Aligned_cols=288 Identities=25% Similarity=0.454 Sum_probs=268.0
Q ss_pred ccccCcccccc-CCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Q 020108 21 EQEDQEPILME-QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE--RLLDSEKHFISHVLAFFAASDGIV 97 (331)
Q Consensus 21 ~~~~~~~ll~~-~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~--~L~~~Er~~~~~~la~l~~~D~~v 97 (331)
+..++++|++| ++++++++|++|||+|++|+++.++||.|+|||+++|+.||+ +||+.||++++++|++|+++|++|
T Consensus 13 ~~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~~Er~~~~~~l~~~~~~D~iv 92 (346)
T 1syy_A 13 VNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLV 92 (346)
T ss_dssp CCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999 778999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-----
Q 020108 98 LENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS----- 172 (331)
Q Consensus 98 ~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~----- 172 (331)
++++++.+++.+++||+++|+++|+++|+||+++||+++++++.++++ +|+++.++|.+++|++|+.++|++
T Consensus 93 ~~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~e---~f~~~~~~p~l~~k~~~i~~~y~~~~~~~ 169 (346)
T 1syy_A 93 GNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPN 169 (346)
T ss_dssp HHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH---HTTHHHHCHHHHHHHHHHHHTTSGGGSTT
T ss_pred HHhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHhhCHHHHHHHHHHHHHHHHhhhhc
Confidence 999998999999999999999999999999999999999999988866 999999999999999999999864
Q ss_pred --------hHHHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-h--
Q 020108 173 --------SDSFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL-H-- 240 (331)
Q Consensus 173 --------~~~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~-~-- 240 (331)
+.+++++++++ +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++. +
T Consensus 170 ~~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~~~ 249 (346)
T 1syy_A 170 FRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249 (346)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhh
Confidence 35789999999 59999999999999999999999999999999999999999999999999888654 3
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCccccCCCCc
Q 020108 241 ----WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGIARAGLFF 311 (331)
Q Consensus 241 ----~~~i~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~~~~~~~~ 311 (331)
+++|++++.+||++|.+|++++++.+++|||.+++++||+|+||+||++||++++|++.+|+|..++.++.
T Consensus 250 ~~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL~~lG~~~~y~~~np~pw~~~~~~~ 324 (346)
T 1syy_A 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDL 324 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCTTC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHhCc
Confidence 57899999999999999999999888999999999999999999999999999999988999988777765
No 9
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.2e-69 Score=521.69 Aligned_cols=286 Identities=19% Similarity=0.280 Sum_probs=265.9
Q ss_pred cCccccccCCCc-eeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020108 24 DQEPILMEQNQR-FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (331)
Q Consensus 24 ~~~~ll~~~~~~-~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~ 102 (331)
.+++||+|++.+ .+++|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 18 ~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~l- 96 (346)
T 2rcc_A 18 ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYS- 96 (346)
T ss_dssp SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGGSCHHHHHHHHHHHHHHHHTTTTCCCHH-
T ss_pred ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 689999999986 479999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc------hHHH
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS------SDSF 176 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~------~~~~ 176 (331)
+.+++.++.||+++|+++|+++|+||+++||++++++ .+|++++++|+++.++|.|++|++|+.+++++ +.++
T Consensus 97 ~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl-~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 175 (346)
T 2rcc_A 97 MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSL-VPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTF 175 (346)
T ss_dssp HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCCChHHH
Confidence 8899999999999999999999999999999999999 57888999999999999999999999999863 4579
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch-------HHHHHHHHH
Q 020108 177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH-------WQKVHHMVH 249 (331)
Q Consensus 177 ~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~-------~~~i~~l~~ 249 (331)
++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+ .+.|++++.
T Consensus 176 ~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~e~~~~v~~l~~ 255 (346)
T 2rcc_A 176 LESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLM 255 (346)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCChhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987543 358999999
Q ss_pred HHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCcc--ccCCCCc
Q 020108 250 EAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGI--ARAGLFF 311 (331)
Q Consensus 250 eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~--~~~~~~~ 311 (331)
+||++|++|++++++.+++|||.+++++||+|+||+||++||++++|+....||+ .++.++.
T Consensus 256 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~nP~~w~~~~~~~ 319 (346)
T 2rcc_A 256 KAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDV 319 (346)
T ss_dssp HHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHTTCCCSCTTCCSCSCTTC------
T ss_pred HHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhcc
Confidence 9999999999999988899999999999999999999999999999976678887 6666643
No 10
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=1.5e-69 Score=510.07 Aligned_cols=272 Identities=20% Similarity=0.273 Sum_probs=257.2
Q ss_pred CceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHH
Q 020108 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (331)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E 113 (331)
.+.+++|++||+.|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.||
T Consensus 16 ~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw~~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pe 95 (296)
T 3mjo_A 16 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 95 (296)
T ss_dssp CCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSHH
T ss_pred ccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHh
Q 020108 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (331)
Q Consensus 114 ~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s 193 (331)
+++|+++|+++|+||+++||+++++++.+ .+++++|+++.++|.+++|++|+.++++++. +++++++++++||++|||
T Consensus 96 ~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEGi~Fys 173 (296)
T 3mjo_A 96 EEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGDD-PLKKKVASTLLESFLFYS 173 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865 4678899999999999999999999998754 578999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 020108 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (331)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~~~~~~~~~~~ 266 (331)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++++++ +++.+++++||++|++|+++++ +
T Consensus 174 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v~~l~~eave~E~~~~~~~~--~ 251 (296)
T 3mjo_A 174 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 251 (296)
T ss_dssp HTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999999988764 3488999999999999999997 6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc--ccCCccccCCCC
Q 020108 267 LIGMNSSLMSQYIKFVADRLLVHIHQCSLFII--ACVKGIARAGLF 310 (331)
Q Consensus 267 ~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~--~~~~p~~~~~~~ 310 (331)
.+||+.+ +++||+|+||+||++||++++|++ .++||+++|||+
T Consensus 252 ~iGl~~~-~~~yi~y~An~~L~~LG~~~~y~~~~~~~~p~~~~~~~ 296 (296)
T 3mjo_A 252 DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLS 296 (296)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC
T ss_pred ccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCchhhcCHHHHhccC
Confidence 8899765 999999999999999999999997 799999999875
No 11
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=2.3e-68 Score=517.45 Aligned_cols=284 Identities=23% Similarity=0.311 Sum_probs=263.3
Q ss_pred cccCccccccCCCc-eeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 020108 22 QEDQEPILMEQNQR-FCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100 (331)
Q Consensus 22 ~~~~~~ll~~~~~~-~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~ 100 (331)
+..+++||+||+.+ ..+.|++|||+|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 11 ~~~~~~~~~g~~~n~~r~~~~~y~~~~~lykk~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~Dsiv~~~ 90 (375)
T 1mxr_A 11 DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 90 (375)
T ss_dssp CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCChhhcCCcccHHHHHHHHHHHhcCCCchhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44679999999854 34569999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc--------
Q 020108 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-------- 172 (331)
Q Consensus 101 l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-------- 172 (331)
+.+.+++.++.||+++|+++|+++|+||+++||+|+++++.||++ +|+++.++|.+++|++|+.++|++
T Consensus 91 ~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~e---~f~~i~~~p~i~~Ka~~i~~~y~~~~~~~~~~ 167 (375)
T 1mxr_A 91 PNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSV---VFDDIVTNEQIQKRAEGISSYYDELIEMTSYW 167 (375)
T ss_dssp HHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHhCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 998999999999999999999999999999999999999988876 999999999999999999999864
Q ss_pred ----------------------hHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHH
Q 020108 173 ----------------------SDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 230 (331)
Q Consensus 173 ----------------------~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~ 230 (331)
++++++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~lH~~~~~~ 247 (375)
T 1mxr_A 168 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 247 (375)
T ss_dssp HHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 2368899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--hc---------hHHHHHHHHHHHHHHHHHHHHhhcC-CCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc
Q 020108 231 LYSLLRK--RL---------HWQKVHHMVHEAVEIETQFVCEALP-CALIGMNSSLMSQYIKFVADRLLVHIHQCSLFII 298 (331)
Q Consensus 231 l~~~l~~--e~---------~~~~i~~l~~eave~E~~~~~~~~~-~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~ 298 (331)
+++.+++ +. ..++|++++++||++|++|++++++ ++++||+.+.+++||+|+||+||++||++++|+.
T Consensus 248 l~~~l~~~~e~p~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~LG~~~~y~~ 327 (375)
T 1mxr_A 248 MLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 327 (375)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHhcccCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999987 32 2467999999999999999999996 4789999999999999999999999999999984
Q ss_pred ccCCcc--ccCCC
Q 020108 299 ACVKGI--ARAGL 309 (331)
Q Consensus 299 ~~~~p~--~~~~~ 309 (331)
..||+ .++.+
T Consensus 328 -~~nP~~w~~~~~ 339 (375)
T 1mxr_A 328 -RSNPIPWINTWL 339 (375)
T ss_dssp -CCCSCGGGGGTC
T ss_pred -CCCCHHHHHHHH
Confidence 48887 66655
No 12
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=2.3e-67 Score=500.10 Aligned_cols=275 Identities=20% Similarity=0.250 Sum_probs=257.1
Q ss_pred CCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCh
Q 020108 32 QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI 111 (331)
Q Consensus 32 ~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~ 111 (331)
.....+++|++||+.|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.
T Consensus 5 ~~~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~ 84 (319)
T 3n37_A 5 RISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALT 84 (319)
T ss_dssp CCCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSS
T ss_pred ccccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHH
Q 020108 112 PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFF 191 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f 191 (331)
||+++|+++|+++|+||+++||+++++++.+ .+++++|+++.++|.+++|++|+.+++++.. +++++|+++++||++|
T Consensus 85 pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~~-~~~~~va~~~lEgi~F 162 (319)
T 3n37_A 85 PHEEAVLSNISFMEAVHARSYSSIFSTLCQT-KDVDAAYAWSEENAPLQRKAQIIQQHYRGDD-PLKKKIASVFLESFLF 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHhhCHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864 5678899999999999999999999998764 5799999999999999
Q ss_pred HhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHhhcC
Q 020108 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALP 264 (331)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~~~~~~~~~ 264 (331)
||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++++++ +++++++++||++|++|+++++
T Consensus 163 ys~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i~~l~~eave~E~~~~~~~~- 241 (319)
T 3n37_A 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELY- 241 (319)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999988764 3489999999999999999998
Q ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc--ccCCccccCCCCc
Q 020108 265 CALIGMNSSLMSQYIKFVADRLLVHIHQCSLFII--ACVKGIARAGLFF 311 (331)
Q Consensus 265 ~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~--~~~~p~~~~~~~~ 311 (331)
+.+||+.+ +++||+|+||+||++||++++|++ ..+||+.++.++.
T Consensus 242 -~~iGl~~~-~~~yi~y~An~~L~~lG~~~~f~~~~~~~nP~~~~~~~~ 288 (319)
T 3n37_A 242 -AETPWADD-VKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSP 288 (319)
T ss_dssp -TTSSCHHH-HHHHHHHHHHHHHHHTTCCCCSCGGGCCCCHHHHHHHCC
T ss_pred -hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHHhhcc
Confidence 67899765 999999999999999999999997 5789988776664
No 13
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-67 Score=504.07 Aligned_cols=275 Identities=18% Similarity=0.238 Sum_probs=258.0
Q ss_pred CCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCh
Q 020108 32 QNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQI 111 (331)
Q Consensus 32 ~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~ 111 (331)
...+.+++|++|||.+++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++++.+++.++.
T Consensus 25 ~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~v~~ 104 (350)
T 4dr0_A 25 IYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDG 104 (350)
T ss_dssp CCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCS
T ss_pred cccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhch-----HHHHHHHHHHHH
Q 020108 112 PEARAFYGFQIAMEN-IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-----DSFAERLVGFAC 185 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~-iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~-----~~~~~~lv~~~~ 185 (331)
||+++|+++|+++|+ ||+++||+|+++++ +++++.++|+++.++|.+++|++|+.+++++. .++++++|++++
T Consensus 105 pE~~~~~~~q~~~E~aiHs~sYs~il~tl~-~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~~~~~~~~~~~lva~~~ 183 (350)
T 4dr0_A 105 HQRKAVLNFMAMMENAVHAKSYSNIFMTLA-PTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVY 183 (350)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHS-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 999999999999999 99999999999997 67788899999999999999999999999753 368999999999
Q ss_pred hHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHH
Q 020108 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQF 258 (331)
Q Consensus 186 lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~~~ 258 (331)
+||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++ +++++++++||++|++|
T Consensus 184 lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~i~~l~~eave~E~~~ 263 (350)
T 4dr0_A 184 LESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEY 263 (350)
T ss_dssp HHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988764 34789999999999999
Q ss_pred HHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCccccCCCC
Q 020108 259 VCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKGIARAGLF 310 (331)
Q Consensus 259 ~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p~~~~~~~ 310 (331)
++++++ .+||+. ++++||+|+||+||++||++++|++..+||+.+++++
T Consensus 264 ~~~~~~--~iGl~~-~~~~Yi~y~An~~L~~LG~~~~y~~~~~nP~~~~~~~ 312 (350)
T 4dr0_A 264 TEDLYD--QVGLSH-DVKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGLN 312 (350)
T ss_dssp HHHHHG--GGTCHH-HHHHHHHHHHHHHHHHTTCCCCSCCCCCCHHHHHTC-
T ss_pred HHHHHh--cCCcHH-HHHHHHHHHHHHHHHHcCCCCCCCCCCCCchHHHhcc
Confidence 999984 599985 5999999999999999999999998778999888775
No 14
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=7e-67 Score=498.59 Aligned_cols=273 Identities=19% Similarity=0.262 Sum_probs=255.3
Q ss_pred CceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHH
Q 020108 34 QRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPE 113 (331)
Q Consensus 34 ~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E 113 (331)
...+++|++||+.|++|+++.++||.|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.+.+++.++.||
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pE 96 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 96 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHH
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHh
Q 020108 114 ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSG 193 (331)
Q Consensus 114 ~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s 193 (331)
+++|+++|+++|+||+++||+++++++.+ .+++++|+++.++|.+++|++|+.+++++. ++++++|+++++||++|||
T Consensus 97 ~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 174 (329)
T 3dhz_A 97 EEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFYS 174 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhhCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 567889999999999999999999999876 4579999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 020108 194 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCA 266 (331)
Q Consensus 194 ~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~-------~~i~~l~~eave~E~~~~~~~~~~~ 266 (331)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++++++ +++.+++++||++|++|+++++ +
T Consensus 175 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~~~l~~eave~E~~~~~~~~--~ 252 (329)
T 3dhz_A 175 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 252 (329)
T ss_dssp HHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999999988764 3488999999999999999997 6
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCCCCcc--ccCCccccCCCCc
Q 020108 267 LIGMNSSLMSQYIKFVADRLLVHIHQCSLFII--ACVKGIARAGLFF 311 (331)
Q Consensus 267 ~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~--~~~~p~~~~~~~~ 311 (331)
.+||+.+ +++||+|+||+||++||++++|++ ..+||+.++.++.
T Consensus 253 ~iGl~~~-~~~yi~y~An~~L~~lG~~~~y~~~~~~~nP~~~~~~~~ 298 (329)
T 3dhz_A 253 DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSP 298 (329)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHHHHC-
T ss_pred ccCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHHHhcc
Confidence 7899765 999999999999999999999997 5789988776653
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=100.00 E-value=3.5e-60 Score=450.96 Aligned_cols=268 Identities=16% Similarity=0.255 Sum_probs=241.0
Q ss_pred ccCccccccCCCceeecccCchHHHHHHHHHhcCCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 020108 23 EDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLA 102 (331)
Q Consensus 23 ~~~~~ll~~~~~~~~~~pi~y~~~~~lykk~~~~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~ 102 (331)
+..+++|.+|+.||+++|++ +|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++.
T Consensus 12 ~~~~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~ 85 (323)
T 3ee4_A 12 RTRSGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQ 85 (323)
T ss_dssp CCCCGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccchhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34689999999999999995 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHH-HHHhh------c
Q 020108 103 ARFLNDIQI---PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWA-LDWIH------S 172 (331)
Q Consensus 103 ~~l~~~i~~---~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i-~~~~~------~ 172 (331)
.+++.++. ||+++|+++|+++|+||+++||+++++++.+++ +|+++.++|.+++|..+. ...+. +
T Consensus 86 -~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~----~f~~~~~~p~lr~k~~~~l~~~~~~~~~~~~ 160 (323)
T 3ee4_A 86 -PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED----LHRYLDDLPAYRQIFYAELPECLNALSADPS 160 (323)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC----CGGGGTTCHHHHHHHHTHHHHHHHHHHHCCC
T ss_pred -HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHcCHHHHHHHHHHHHHHHHhhccCCC
Confidence 57777764 999999999999999999999999999987653 899999999999986532 22221 2
Q ss_pred hHHHHHHHHHHH-HhHHHHHHhHHHHHH-HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch------HHHH
Q 020108 173 SDSFAERLVGFA-CVEGIFFSGSFCAIF-WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH------WQKV 244 (331)
Q Consensus 173 ~~~~~~~lv~~~-~lEgi~f~s~F~~~~-~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~------~~~i 244 (331)
+.++++++++|+ ++||++|||||++++ +|+++|+|||++++|++|+|||++|+.|++.+++.++++.+ .+++
T Consensus 161 ~~~~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~v 240 (323)
T 3ee4_A 161 PAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRM 240 (323)
T ss_dssp HHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHH
Confidence 456899999995 899999999997554 89999999999999999999999999999999999998765 4789
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcC-CCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q 020108 245 HHMVHEAVEIETQFVCEALPCALI-GMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVK 302 (331)
Q Consensus 245 ~~l~~eave~E~~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~ 302 (331)
++++.+||++ ++|+.++++.++. |||.+++++||+|+||+||++||+++.|++.+..
T Consensus 241 ~el~~eave~-~e~~~~~~~~~~~lGl~~~~~~~Yi~y~AnrrL~~LG~~~~f~~~~~~ 298 (323)
T 3ee4_A 241 NELIPLALRL-IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEID 298 (323)
T ss_dssp HHHHHHHHHH-HHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTC
T ss_pred HHHHHHHHHH-HHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHhh
Confidence 9999999999 9999998877774 9999999999999999999999999999976544
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=98.29 E-value=4.3e-05 Score=75.87 Aligned_cols=221 Identities=14% Similarity=0.035 Sum_probs=132.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f 150 (331)
.+.++++.-+.+++..++.+..++-......+ .+.+..+++.++.+.++|+.+|.+|+..-.++...+......-+ -|
T Consensus 80 ~~~~~dprw~~~lk~~~~~~~~~Ey~a~~~~a-~~~r~ap~~~~rnaaa~q~lDElRHaQ~~~~~~~el~~~~~~~~-~f 157 (491)
T 2inc_A 80 FVDRADPGWVSTMQLHFGAIALEEYAASTAEA-RMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWD-WA 157 (491)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGG-HH
T ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc-cc
Confidence 34578888888888888888787766554444 57788999999999999999999999998777776543211100 02
Q ss_pred H--HHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHH-cCCCCChHHHHHHHHhhhhhHHH
Q 020108 151 N--AIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKK-RGLMPGLTFSNELISRDEGLHCD 226 (331)
Q Consensus 151 ~--~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~-~g~l~g~~~~i~~I~RDE~~H~~ 226 (331)
+ ...++|..+.--..+.+..-+. ...+.+++.. +.|+++.--.|..+...+. +|- +.+..++..|+.||++|..
T Consensus 158 ~~~~~~~~p~~~~~R~~~ed~~~t~-D~~E~~ialnlv~E~~~tnll~~~f~~~Aa~nGD-~lt~~v~~siq~DEaRH~~ 235 (491)
T 2inc_A 158 HKAIHTNEWAAIAARSFFDDMMMTR-DSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGD-HTFASLISSIQTDESRHAQ 235 (491)
T ss_dssp HHGGGSCCHHHHHHHHHHHHHTTSS-CHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHT
T ss_pred cHHHhhcCcccHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHH
Confidence 1 3344555433222222221222 2456767774 5688644444433333333 333 3499999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H----HHHhhcCCCcCCCC-HHHHHHHHHHHHHHHHHhCCCCCC
Q 020108 227 FACLLYSLLRKRLHWQKVHHMVHEAVEIET----Q----FVCEALPCALIGMN-SSLMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 227 f~~~l~~~l~~e~~~~~i~~l~~eave~E~----~----~~~~~~~~~~~Gl~-~~~~~~yi~y~an~~L~~lG~~~~ 295 (331)
+|..+++.+.+....+..++-+....-.-. . ..++..+.+.---+ .+.+.++|.-..-++|..+|++..
T Consensus 236 ~g~~ll~~ll~d~~~~~~Q~wld~w~wra~~a~~~l~g~~~dy~~p~~~r~~s~~e~~~~Wv~~~~~~~L~~lGL~~P 313 (491)
T 2inc_A 236 QGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKP 313 (491)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999988755322222322222222111 1 12232222101111 455555555545667999999654
No 17
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=98.02 E-value=0.00061 Score=67.80 Aligned_cols=221 Identities=11% Similarity=-0.049 Sum_probs=130.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKEKH 147 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~---~d~~e~~ 147 (331)
.+.++++.-+.+++..++.++.++-......+ .+.+..+.+.++...++|+.+|.+|+..-.++...+. .||.--+
T Consensus 77 ~~~~~dprW~~~Lk~~l~av~~~EY~a~~~~a-~~~r~ap~~~~rnaaa~qalDElRHaQ~~~~l~k~~~~~~~dp~Gfd 155 (512)
T 1mty_D 77 AGVRVHPKWNETMKVVSNFLEVGEYNAIAATG-MLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHN 155 (512)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTT
T ss_pred CcccCCHHHHHHHHHHHcccCHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCC
Confidence 45679999999999999999888876665444 5788999999999999999999999998444333332 1211100
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHH-HcCCCCChHHHHHHHHhhhhhHH
Q 020108 148 RLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHC 225 (331)
Q Consensus 148 ~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~-~~g~l~g~~~~i~~I~RDE~~H~ 225 (331)
..-.++.++|..+---..+.....+. ...+.+++.. +.|.++.--.|..+...+ .+|=+. +..++.-|+.||++|.
T Consensus 156 ~~r~~~~~~p~~q~~R~~fe~~~~t~-D~~E~~valn~v~E~~~tnll~~~~~~~Aa~nGD~~-tptv~~siqsDEaRH~ 233 (512)
T 1mty_D 156 DARRTRTIGPLWKGMKRVFSDGFISG-DAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEI-TPTVFLSIETDELRHM 233 (512)
T ss_dssp THHHHGGGSSHHHHHHHHHTHHHHSS-CHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCchhhhHHHHHHHhhcC-ChHHHhhhhhhhHHHHhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHH
Confidence 01123444565433222221111122 2456667764 568875544444433333 344443 8999999999999999
Q ss_pred HHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH--------HhhcCCCcCCCCHHHHHHHHHHH----HHHHHHhCCC
Q 020108 226 DFACLLYSLLRKRLH-WQKVHHMVHEAVEIETQFV--------CEALPCALIGMNSSLMSQYIKFV----ADRLLVHIHQ 292 (331)
Q Consensus 226 ~f~~~l~~~l~~e~~-~~~i~~l~~eave~E~~~~--------~~~~~~~~~Gl~~~~~~~yi~y~----an~~L~~lG~ 292 (331)
..|..+++.+.+.+. ...+++-+....-.-.+.. ++..+...... .+.+..||.-. .-.+|..+|+
T Consensus 234 ~~g~~ll~~Lled~~Nr~~lQ~wldkw~wra~~af~~l~g~~~dy~~~~R~~s~-~e~~~rWv~ed~~~~~~~~L~~lGL 312 (512)
T 1mty_D 234 ANGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPW-VKTWDRWVYEDWGGIWIGRLGKYGV 312 (512)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSCH-HHHHHHHHTTTTTTHHHHTTGGGTC
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhhHHhhccccccchH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999986532 2333333333222221111 12111111121 45555555442 3345889999
Q ss_pred CCC
Q 020108 293 CSL 295 (331)
Q Consensus 293 ~~~ 295 (331)
+..
T Consensus 313 ~~P 315 (512)
T 1mty_D 313 ESP 315 (512)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 18
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=97.75 E-value=0.011 Score=55.09 Aligned_cols=204 Identities=10% Similarity=-0.024 Sum_probs=138.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 020108 74 RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAI 153 (331)
Q Consensus 74 ~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~ 153 (331)
.||+.-|..+.+.++.++-.+-+.+..+. ......|+-|.+.-++..+.+|.-|...+..++.+++.|+++ +....
T Consensus 24 ~mP~~Yr~~L~~ll~~laD~ELi~~~rl~-ew~~~AP~Lee~iALa~ia~DE~GHa~~l~~~a~~lG~d~d~---l~~~~ 99 (311)
T 3pvt_A 24 WMPDAYRKTLIRQIGQHAHSEIVGMLPEG-NWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED---IYQKM 99 (311)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTHHHHH-TTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHH
Confidence 49999999999999999887766665554 366788999999999999999999999998999999776655 33222
Q ss_pred hhcHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhHHHHHHhHHHHHHHHH-HcCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 020108 154 ENIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLL 231 (331)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~-~~g~l~g~~~~i~~I~RDE~~H~~f~~~l 231 (331)
... ..|. . ..++ ...+|+..++-..+.. +++..++.. .+.-.+-++.+...|+++|+.|..++...
T Consensus 100 r~~---~~~~--~-~lfe~P~~dWad~vvr~~l~D------~~a~~~~~~L~~ss~~plA~~a~ki~kEE~yH~~~g~~w 167 (311)
T 3pvt_A 100 LDG---RMKY--S-SIFNYPTLSWADIGVIGWLVD------GAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEA 167 (311)
T ss_dssp HTT---SSCC--C-GGGGSCCCSHHHHHHHHHHHH------HHHHHHHHTTTTCSBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc---hhhh--h-hHHhCCCCCHHHHHHHHHHHH------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0000 0 0111 2335666555333333 444443322 24456789999999999999999999998
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHhhcCC--------------CcCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 020108 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC--------------ALIGMNSSLMSQYIKFVADRLLVHIHQCSL 295 (331)
Q Consensus 232 ~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~ 295 (331)
+..|...- ++.++.+.++++.=-.++..+|+. ++-+.+.+++.+--.-.....|..+|++-+
T Consensus 168 v~rL~~gt--~esr~r~Q~Al~~~wp~~~elFg~~~~~s~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~~gL~~P 243 (311)
T 3pvt_A 168 CMALAQGS--EAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVP 243 (311)
T ss_dssp HHHHHTSC--HHHHHHHHHHHHHHHHHHHHTTCSCGGGCTTHHHHHHTTSCSSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHhCC--HHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88887543 345677777777555555555531 233356777876555577788999998653
No 19
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=97.72 E-value=0.0082 Score=56.39 Aligned_cols=214 Identities=9% Similarity=-0.063 Sum_probs=130.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCChHHHHH
Q 020108 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSE---MYSLLLETYIKDSKEKHR 148 (331)
Q Consensus 72 ~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~e---sYs~il~~~~~d~~e~~~ 148 (331)
+..+++.-++.++..++-+-..+-...-+. ..+.+..+.+.++....+|+++|.+|+. -|++-+.....+...-..
T Consensus 103 ~~~ld~~w~~~l~~~l~p~~~~e~~~~~~~-a~~~r~~~~~~i~n~~~~qa~DelR~aQ~~~y~~~~L~~~~~~~g~~~~ 181 (322)
T 2inc_B 103 DQMLTREWVETLARFYTPARYLFHALQMGS-VYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKR 181 (322)
T ss_dssp GGGSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTS
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchH
Confidence 456888888888877766666554433232 3467788999999999999999999999 777766555432211000
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHH-HHcCCCCChHHHHHHHHhhhhhHHH
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCD 226 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l-~~~g~l~g~~~~i~~I~RDE~~H~~ 226 (331)
-=..+.++|..+---..+.+.+-.. .+.+.+|+.. ++|+++---.|..+-.. +.+|= ..+..++..+..||++|..
T Consensus 182 ~k~~w~~~p~wq~~R~~~E~~~~~~-Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD-~~t~~l~~s~q~D~~Rh~~ 259 (322)
T 2inc_B 182 ERDVWENDPAWQGFRELIEKALIAW-DWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGD-TLLGLLAQAQKRDAERHRR 259 (322)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTTCC-SHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHHHHhhccC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHHHHHHH
Confidence 1124666776555333333332222 3678888886 56998654444443322 23332 4578888999999999999
Q ss_pred HHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCC
Q 020108 227 FACLLYSLLRKRLH-WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIH 291 (331)
Q Consensus 227 f~~~l~~~l~~e~~-~~~i~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG 291 (331)
.+..+++.+.+++. .+.+..-+......-.+.+..+.+ -..+ .....+-++-....++..+|
T Consensus 260 ~~~alvk~~~~~~~N~~~lq~wi~~w~~ra~~A~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~~g 322 (322)
T 2inc_B 260 WSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCS-ALPD--GENAIVEAKSASRYVRQMMG 322 (322)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSTT--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcC--CCcHHHHHHHHHHHHHHhcc
Confidence 99999999987633 333444444433333332322111 0111 11234677777778888776
No 20
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=97.65 E-value=0.0014 Score=64.92 Aligned_cols=222 Identities=14% Similarity=0.055 Sum_probs=129.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLF 150 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f 150 (331)
-+.++++.-..+++..++.+..++-..... ...+.+..+.++.+..+.+|+.+|.+|+..=.+....+..++..=+.-.
T Consensus 81 ~~~~ldp~W~~~Lk~~~~av~~~Ey~a~~g-~A~~~R~aps~~~rn~~~fQ~~DElRHaQ~q~y~~~~l~~~~~gFd~~~ 159 (500)
T 3ge3_A 81 IYENSDPGWISTLKSHYGAIAVGEYAAVTG-EGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAW 159 (500)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGGHHH
T ss_pred CcccCCHHHHHHHHHHhcccchHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccChHH
Confidence 356789999999999999999988766443 3467889999999999999999999999977666666654332200001
Q ss_pred HHHhhcHHHH--HHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHH-cCCCCChHHHHHHHHhhhhhHHH
Q 020108 151 NAIENIPCVA--QKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKK-RGLMPGLTFSNELISRDEGLHCD 226 (331)
Q Consensus 151 ~~~~~~p~l~--~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~-~g~l~g~~~~i~~I~RDE~~H~~ 226 (331)
.++. +|.-+ ---..+.+.+-+. ..++.+++.. +.|.++=-..|..+-..+. +|= ..+..++.-|+.||++|..
T Consensus 160 r~~~-d~~W~~~~~R~~fE~~~~t~-Dw~E~~valnlvfEp~~tnll~v~l~~~Aa~NGD-~~tptl~~S~qsDe~Rh~~ 236 (500)
T 3ge3_A 160 RAYH-SNEWAAIAAKHFFDDIITGR-DAISVAIMLTFSFETGFANMQFLGLAADAAEAGD-YTFANLISSIQTDESRHAQ 236 (500)
T ss_dssp HGGG-SCCHHHHHHHHHHHHHTTSS-CHHHHHHHTCCCCCCCCHHHHHTHHHHHHHHTTC-HHHHHHHHHHHHHHHHHGG
T ss_pred HHHh-CchhhhhHHHHHHHHHHccC-CHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhHHHHHH
Confidence 1121 12111 1001111112121 2567777764 4565432222222222332 332 3577888899999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH--------HhhcCCCcCCCC-HHHHHHHHHHHHHHHHHhCCCCCCC
Q 020108 227 FACLLYSLLRKRLHWQKVHHMVHEAVEIETQFV--------CEALPCALIGMN-SSLMSQYIKFVADRLLVHIHQCSLF 296 (331)
Q Consensus 227 f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~--------~~~~~~~~~Gl~-~~~~~~yi~y~an~~L~~lG~~~~y 296 (331)
.+..+++.+.+.+.++.+...+....-.-.+.+ ++..+.+.--.+ ++-+.++|.-.-=++|..+|++.+-
T Consensus 237 ~g~alv~~lle~~~~~n~q~wld~wfwra~~a~~al~G~~~dY~~p~~~r~~S~~e~~~ewi~~~~~~~L~~~Gl~~P~ 315 (500)
T 3ge3_A 237 QGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKPW 315 (500)
T ss_dssp GHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHHHHHHHTTCCCCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 999999988866444446555554443332222 222221111222 2333333222223479999997753
No 21
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=97.61 E-value=0.0076 Score=56.65 Aligned_cols=164 Identities=15% Similarity=0.004 Sum_probs=99.8
Q ss_pred CCCCCcc-cCccc------chHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHhcCC--------hHH
Q 020108 56 SFWTAEE-VDLSQ------DVQHW----ERLLDSEKHFISHVLAFFAASDGIVLENLA---ARFLNDIQ--------IPE 113 (331)
Q Consensus 56 ~~W~pee-idl~~------D~~d~----~~L~~~Er~~~~~~la~l~~~D~~v~~~l~---~~l~~~i~--------~~E 113 (331)
..|.|++ +|.++ +..+| ++||+.-.-++.. +.+..+++. ..+...+. ++.
T Consensus 35 ~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~~l~d~~~v~lv~--------~~iTEd~LPtY~~~L~~~fgvrd~~g~~~~~ 106 (338)
T 2uw1_A 35 KSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVG--------DMITEEALPTYMSMLNRCDGIKDETGAEPSA 106 (338)
T ss_dssp GCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHH--------HHHHHHTHHHHHHHHTTSTTTSCSSSSCCSH
T ss_pred hcCCchhcCCCccccchhhhcccccHhhccCCHHHHHHHHH--------HHHhhhcchHHHHHHHHHcCcccccCCCcch
Confidence 6899988 66555 55677 4688766543332 233333332 12233321 467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcHHHHHHHHHHHHHhhch--HHHHHHHHHHHHhHHHH
Q 020108 114 ARAFYGFQIAMENIHSEMYSLLLETYIK-DSKEKHRLFNAIENIPCVAQKAKWALDWIHSS--DSFAERLVGFACVEGIF 190 (331)
Q Consensus 114 ~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~--~~~~~~lv~~~~lEgi~ 190 (331)
...|.....++|+.|+.+-..++-.-+. ||.. +... +...+..-++-+ .+....++.-.+-|..-
T Consensus 107 w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~---lE~~---------~~~~i~~Gfd~~~~~~p~~~~vy~sfQE~AT 174 (338)
T 2uw1_A 107 WAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRK---IEKT---------IQYLIGSGMDIKSENSPYLGFIYTSFQERAT 174 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHH---HHHH---------HHHHHHHCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHH---HHHH---------HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999988875442 6655 2111 111222223211 12334544435667764
Q ss_pred HHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch
Q 020108 191 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240 (331)
Q Consensus 191 f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~ 240 (331)
+ .++..+--+++..-=|.++++...|++||.+|..|...+++.+....+
T Consensus 175 ~-vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dp 223 (338)
T 2uw1_A 175 F-ISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDP 223 (338)
T ss_dssp H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4 344444344433335889999999999999999999999987775444
No 22
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=97.18 E-value=0.049 Score=52.47 Aligned_cols=220 Identities=8% Similarity=-0.101 Sum_probs=130.9
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH-
Q 020108 71 HWERLLDSEK-HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI---KDSKE- 145 (331)
Q Consensus 71 d~~~L~~~Er-~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~---~d~~e- 145 (331)
.+..|++.-+ +.++..++.+..++-....+.+ .+.+..+.+.++....+|+++|-+|+..-+++...+. .++.+
T Consensus 135 ~~~~ld~~w~~~~l~~~l~p~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~g~~~~ 213 (395)
T 1mhy_B 135 SIRTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDAS 213 (395)
T ss_dssp GGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 4557999999 8999999999888876655544 5778889999999999999999999999888865552 22211
Q ss_pred HHHHHHHHhhcHHH---HHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHH-HHHHH-cCCCCChHHHHHHHHh
Q 020108 146 KHRLFNAIENIPCV---AQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAI-FWLKK-RGLMPGLTFSNELISR 219 (331)
Q Consensus 146 ~~~~f~~~~~~p~l---~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~-~~l~~-~g~l~g~~~~i~~I~R 219 (331)
.+.-=..|.++|.- ++-.+.+ |+.. ..+.+.+++.. ++|+++.--.|..+ -.++. +|=+ -+..++.-+..
T Consensus 214 ~~~~k~~W~~dp~Wq~~R~~~E~~--~l~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~~Aa~nGD~-~tptl~~s~q~ 289 (395)
T 1mhy_B 214 TDVPKKIWTTDPIYSGARATVQEI--WQGV-QDWNEILWAGHAVYDATFGQFARREFFQRLATVYGDT-LTPFFTAQSQT 289 (395)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHHHH--HHSC-CCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTTTCS-SHHHHHHHHHH
T ss_pred hHHHHHHHhhCcchHHHHHHHHhh--hhhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCch-hHHHHHHHHHH
Confidence 00011223444432 2222222 0221 12668888885 56998665555544 34443 3332 24445555899
Q ss_pred hhhhHHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHHHHHHHHh---hcCC--CcCCCC-----HHHHHHHHHHHH
Q 020108 220 DEGLHCDFACLLYSLLRKRL------HWQKVHHMVHEAVEIETQFVCE---ALPC--ALIGMN-----SSLMSQYIKFVA 283 (331)
Q Consensus 220 DE~~H~~f~~~l~~~l~~e~------~~~~i~~l~~eave~E~~~~~~---~~~~--~~~Gl~-----~~~~~~yi~y~a 283 (331)
||++|...+..+++.+.+.. +...+..-+......-.+-+.. ++.. .+-|.+ .+.++.+..--.
T Consensus 290 D~~Rh~~~~~alvk~lle~d~~~~~~N~~llq~Wid~W~~ra~~Al~~l~p~~~~~~~~~~~~k~~~~~~a~~~v~~~~~ 369 (395)
T 1mhy_B 290 YFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWK 369 (395)
T ss_dssp HHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999887321 2233444444444433333331 1111 111222 223444222114
Q ss_pred HHHHHhCCCCCC
Q 020108 284 DRLLVHIHQCSL 295 (331)
Q Consensus 284 n~~L~~lG~~~~ 295 (331)
..+|..+|+...
T Consensus 370 ~~~L~~~GL~~P 381 (395)
T 1mhy_B 370 IDYADKIGFRVD 381 (395)
T ss_dssp HHTHHHHTCCCC
T ss_pred HHHHHHcCCCCC
Confidence 489999999864
No 23
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=97.08 E-value=0.17 Score=47.55 Aligned_cols=215 Identities=8% Similarity=-0.067 Sum_probs=127.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH-HHHH
Q 020108 71 HWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE-KHRL 149 (331)
Q Consensus 71 d~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e-~~~~ 149 (331)
.+..+++.-++.++..++-+...+-...-+. ..+.+..+.+.++....+|+++|-+|+..-+++...+..++.. ...-
T Consensus 107 ~~~~ld~~w~~~l~~~~~plr~~E~ga~~~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~ls~~~l~l~~~~g~~~~~~ 185 (333)
T 3u52_C 107 LLTRLSEETQKQLLRLLVPLRHVELGANMNN-AKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDES 185 (333)
T ss_dssp TTTTSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHH
T ss_pred CcccCCHHHHHHHHHHcchHhHHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhHH
Confidence 3457889888888888877777775544333 3577889999999999999999999999777766666433211 1111
Q ss_pred HHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHH-HHHcC-CCCChHHHHHHHHhh-hhhHH
Q 020108 150 FNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFW-LKKRG-LMPGLTFSNELISRD-EGLHC 225 (331)
Q Consensus 150 f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~-l~~~g-~l~g~~~~i~~I~RD-E~~H~ 225 (331)
-..|.++|.-+---..+.+.+.. ..+.+.+++.. ++|+++-.-.|..+.. .+.+| -+- + ++--++.| |++|.
T Consensus 186 k~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~ll~~L~~~~~~~~aa~~gd~~~--~-~~~s~q~d~~~Rh~ 261 (333)
T 3u52_C 186 KAYWMDDEMWQPMRKLVEDTLVV-DDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDV--S-MLTEFMRDWYKESL 261 (333)
T ss_dssp HHHHHHCTTTHHHHHHHHHHTTC-CCHHHHHHHHHTHHHHHHHHHHHTHHHHHHHTTTCGGG--G-GTSHHHHHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcee--h-hhHHHhhhHHHHHH
Confidence 12345666444311112111211 13678888885 5898865544444442 33343 222 2 33345455 99999
Q ss_pred HHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 020108 226 DFACLLYSLLRKRLH--WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 226 ~f~~~l~~~l~~e~~--~~~i~~l~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~ 294 (331)
..+..+++.+.++-+ .+.+..-+.+-...-.+=+.-+. ... +..+. .+-++-....++..+|+++
T Consensus 262 ~~~~alvk~ll~~~~~N~~~lq~Wi~~W~~ra~~al~pl~-~~~--~~~~~-~~~~~~~~~~~~~~~gl~~ 328 (333)
T 3u52_C 262 RWTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKPLA-EAS--VGIDG-LNEARAELSARLKKFELQS 328 (333)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT--TCHHH-HHHHHHHHHHHHGGGTCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--cCchH-HHHHHHHHHHHHHHCCCCc
Confidence 999999998886522 22233333333222111111111 011 22222 5557778888999999876
No 24
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=97.07 E-value=0.037 Score=51.99 Aligned_cols=165 Identities=10% Similarity=-0.060 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCChHHHHH
Q 020108 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEM---YSLLLETYIKDSKEKHR 148 (331)
Q Consensus 72 ~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~es---Ys~il~~~~~d~~e~~~ 148 (331)
+..+++.-++.++..++-+..++-...-+- ..+.+..+.+.++....+|+++|-+|+.. +++-+..-+.+-+..+.
T Consensus 107 ~~~ld~~w~~~l~~~l~pl~~~e~~a~m~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~~q~~~~~l~~~~~~~~~~~~ 185 (327)
T 3ge3_B 107 DQMVREGWEHTMARCYSPLRYLFHCLQMSS-AYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEH 185 (327)
T ss_dssp GGGSCTTHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTS
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCchhH
Confidence 457888888888888877777765543332 35778899999999999999999999444 77655443322010000
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHH-HHcCCCCChHHHHHHHHhhhhhHHH
Q 020108 149 LFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCD 226 (331)
Q Consensus 149 ~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l-~~~g~l~g~~~~i~~I~RDE~~H~~ 226 (331)
--..+.++|.-+---.++.+.+.. ..+.+.+++.. ++|+++---.|..+-.. +.+|= ..+..++..+..||++|..
T Consensus 186 ~k~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~Aa~nGD-~~t~~l~~s~qsD~~Rh~~ 263 (327)
T 3ge3_B 186 ERELWEKEPGWQGLRELMEKQLTA-FDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENND-TLLPLLIDSQLKDAERHSR 263 (327)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHHTHHHHHHHHTHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHHH
Confidence 112345566544311122111211 23678888874 67887544333333322 23332 4588889999999999999
Q ss_pred HHHHHHHHHHhhc
Q 020108 227 FACLLYSLLRKRL 239 (331)
Q Consensus 227 f~~~l~~~l~~e~ 239 (331)
.+..+++.+.+++
T Consensus 264 ~~~alvk~ll~~~ 276 (327)
T 3ge3_B 264 WSKALVKHALENP 276 (327)
T ss_dssp HHHHHHHHHTTST
T ss_pred HHHHHHHHHhcCh
Confidence 9999999998773
No 25
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=96.97 E-value=0.064 Score=53.33 Aligned_cols=214 Identities=10% Similarity=-0.041 Sum_probs=128.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHH
Q 020108 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKD-----SKEK 146 (331)
Q Consensus 72 ~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d-----~~e~ 146 (331)
...+++.-++.++..++.+..++-....+.+ .+.+....+..+....+|+++|.+|+..-+++...+..+ ...+
T Consensus 86 ~~~~d~~W~~~Lk~~l~al~~~EYgA~~~~a-~~~r~~~g~~~~na~~fqa~DeLRhAQ~~~~~~~~l~~~~~Gf~d~a~ 164 (511)
T 3u52_A 86 QNISDARYVNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPH 164 (511)
T ss_dssp GGSSCGGGHHHHHHHHHHTHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhhh
Confidence 4567888888899999999888876655444 577889999999999999999999999888776655321 1111
Q ss_pred HHHHH--HHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhh
Q 020108 147 HRLFN--AIENIPCVAQKAKWALDWIHSSDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 223 (331)
Q Consensus 147 ~~~f~--~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~ 223 (331)
..+ |... .-++-.+.+ .. . ..++.+|+.. +.|+++---.|..+...+..+==..+...+.-+..||++
T Consensus 165 --~~d~~W~~~--~~R~~vEd~---~t-~-Dw~E~~vA~nlv~E~l~tnLl~~~~~~~Aa~nGD~~t~t~~~s~qsDesR 235 (511)
T 3u52_A 165 --MHDRVWYLS--VPKSFFDDA---RS-A-GPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEAR 235 (511)
T ss_dssp --HHTTCGGGH--HHHHHHHHH---HH-S-CHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --hcCccccch--hhHHHHhhc---cc-c-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHHH
Confidence 111 1100 112222322 21 1 2567888885 567774443344433344432113466678889999999
Q ss_pred HHHHHHHHHHHHHhh-ch-HHHHHHHHHHHHHHH------HHH-HHhhcCCCcCCCCHHHHHHHHHH---HHHHHHHhCC
Q 020108 224 HCDFACLLYSLLRKR-LH-WQKVHHMVHEAVEIE------TQF-VCEALPCALIGMNSSLMSQYIKF---VADRLLVHIH 291 (331)
Q Consensus 224 H~~f~~~l~~~l~~e-~~-~~~i~~l~~eave~E------~~~-~~~~~~~~~~Gl~~~~~~~yi~y---~an~~L~~lG 291 (331)
|...+..+++.+..+ +. .+.+..-+......- ... .+|..|...... ++..+.|++- ..-++|..+|
T Consensus 236 h~~w~~alvk~~l~~dp~Nr~llq~wl~~w~wra~~Al~~lg~~~dY~~p~r~~s~-~e~~~~~~e~~~~~~~~~L~~~G 314 (511)
T 3u52_A 236 HMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSW-SEAWEVYYEQNGGALFKDLERYG 314 (511)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH-HHHHHHHTHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999977743 32 233333333222211 122 233344223333 4556555432 2345799999
Q ss_pred CCCCC
Q 020108 292 QCSLF 296 (331)
Q Consensus 292 ~~~~y 296 (331)
++.+-
T Consensus 315 l~~P~ 319 (511)
T 3u52_A 315 IRPPK 319 (511)
T ss_dssp CCCCT
T ss_pred CCCCh
Confidence 97653
No 26
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=96.75 E-value=0.022 Score=52.12 Aligned_cols=172 Identities=17% Similarity=0.070 Sum_probs=93.4
Q ss_pred HHHHhcCCCCCcc-cCccc-------chHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcC-ChHHHHH
Q 020108 50 YKKAQASFWTAEE-VDLSQ-------DVQHWE----RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDI-QIPEARA 116 (331)
Q Consensus 50 ykk~~~~~W~pee-idl~~-------D~~d~~----~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i-~~~E~~~ 116 (331)
+.+ .+..|.|++ ||.++ +..+|+ +||+..+.++...+--=-.+.+-+. . +.... .++....
T Consensus 25 ~l~-~~~~W~p~d~lPw~~~~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP~Y~~-~----L~~~~~~d~~w~~ 98 (275)
T 1za0_A 25 HLD-TEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHR-E----LVEHFILEDWWGR 98 (275)
T ss_dssp HHH-TCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC--------------------CHHHH
T ss_pred Hhh-hhccCChhhcCCCcccccchhcccccccHhhccCCHHHHHHHHHHHHHhhcchHHHH-H----HHHhcCCCchHHH
Confidence 344 456799998 65541 334563 6888777655433211111111111 1 22222 2356778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHhHHHHHHhH
Q 020108 117 FYGFQIAMENIHSEMYSLLLETYI-KDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLVGFACVEGIFFSGS 194 (331)
Q Consensus 117 ~l~~Q~~~E~iH~esYs~il~~~~-~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~~~lEgi~f~s~ 194 (331)
|.....++|+.|..+-..++-.-+ -||.. +... +...+.+-++. ..+....++.-.+-|..-+
T Consensus 99 w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---lE~~---------~~~~i~~g~~~~~~~p~~~~vy~~fqE~aT~--- 163 (275)
T 1za0_A 99 WLGRWTAEEHLHAIALREYLVVTREVDPVA---NEDV---------RVQHVMKGYRAEKYTQVETLVYMAFYERCGA--- 163 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCTTT---TTCT---------TC----------CCCHHHHHHHHHHHHHHHH---
T ss_pred HhhhHhHHHHHHHHHHHHHHHHhCCCCHHH---HHHH---------HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH---
Confidence 999999999999999998886433 25544 1100 00011111111 1112344443345676533
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHH
Q 020108 195 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK 243 (331)
Q Consensus 195 F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~ 243 (331)
.....+++.--=|-++++...|++||.+|..|...+++.+.+..+...
T Consensus 164 -v~y~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~~ 211 (275)
T 1za0_A 164 -VFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDET 211 (275)
T ss_dssp -HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 222233443335789999999999999999999999998886655433
No 27
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=96.71 E-value=0.11 Score=49.74 Aligned_cols=220 Identities=9% Similarity=-0.091 Sum_probs=128.1
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----HH
Q 020108 71 HWERLLDSEK-HFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS----KE 145 (331)
Q Consensus 71 d~~~L~~~Er-~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~----~e 145 (331)
.+..+++.-+ +.++..++.+..++-....+.+ .+.+..+.+.++....+|+++|-+|+..-++.+..+..+. +.
T Consensus 127 ~~~~ld~~w~~~~l~~~l~~~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~gf~~~ 205 (384)
T 1mty_B 127 QIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDES 205 (384)
T ss_dssp GGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcch
Confidence 4557999999 8899999999888876665554 4788899999999999999999999999888766553110 00
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHH-hhchHHHHHHHHHHH-HhHHHHHHhHHHH-HHHHHH-cCCCCChHHHHHHHHhhh
Q 020108 146 KHRLFNAIENIPCVAQKAKWALDW-IHSSDSFAERLVGFA-CVEGIFFSGSFCA-IFWLKK-RGLMPGLTFSNELISRDE 221 (331)
Q Consensus 146 ~~~~f~~~~~~p~l~~k~~~i~~~-~~~~~~~~~~lv~~~-~lEgi~f~s~F~~-~~~l~~-~g~l~g~~~~i~~I~RDE 221 (331)
...-=..|.++|..+---..+.+. +.. ..+.+.+|+.. ++|+++..-.|.- +-.++. +|=+- +..++.-+..||
T Consensus 206 ~~~~k~~W~~dp~wq~~R~~vE~~~l~~-~Dw~E~~va~nlv~epl~~~L~~~~~~~~~Aa~nGD~~-tp~l~~s~q~D~ 283 (384)
T 1mty_B 206 TAVPKAEWTNGEVYKSARLAVEGLWQEV-FDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDNL-TPFFINQAQTYF 283 (384)
T ss_dssp SHHHHHHHHHCSTTHHHHHHHHHHHHTC-CCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTCCH-HHHHHHHHHHHH
T ss_pred hHHHHHHHhhCchhHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCchh-HHHHHHHHHHHH
Confidence 000112344455433322222222 221 12667777775 4688755422222 223333 34332 334555599999
Q ss_pred hhHHHHHHHHHHHHH-hhc-----hHHHHHHHHHHHHHHHHHHHHhhcCC--CcC-CCC-H----HHHHHHHHHH-HHHH
Q 020108 222 GLHCDFACLLYSLLR-KRL-----HWQKVHHMVHEAVEIETQFVCEALPC--ALI-GMN-S----SLMSQYIKFV-ADRL 286 (331)
Q Consensus 222 ~~H~~f~~~l~~~l~-~e~-----~~~~i~~l~~eave~E~~~~~~~~~~--~~~-Gl~-~----~~~~~yi~y~-an~~ 286 (331)
++|...+..+++.+. +.+ +...+..-+......-.+-+..+.+. ... |.+ . +.+.. +.-. ...+
T Consensus 284 ~Rh~~w~~alvk~lle~d~~~~~~N~~llq~Wid~W~~ra~~A~~~l~p~~~~~~~~~~~~~~~~~al~~-v~~~~~~~~ 362 (384)
T 1mty_B 284 QIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYR-VVDDWIEDY 362 (384)
T ss_dssp HHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhHHHHHHH-HHHHHHHHH
Confidence 999999999999887 433 22334444444444333333321111 111 222 2 22333 4444 5567
Q ss_pred HHhCCCCC
Q 020108 287 LVHIHQCS 294 (331)
Q Consensus 287 L~~lG~~~ 294 (331)
|..+|++.
T Consensus 363 l~k~Gl~~ 370 (384)
T 1mty_B 363 ASRIDFKA 370 (384)
T ss_dssp GGGGTCCC
T ss_pred HHHcCCCC
Confidence 88899874
No 28
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=96.65 E-value=0.28 Score=42.31 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHH
Q 020108 76 LDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE--KHRLFNAI 153 (331)
Q Consensus 76 ~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e--~~~~f~~~ 153 (331)
|+.=|++|.++=+-..-++....+|... +...+|+ -+-=+..-+-||++|.+.|.--=+.+.-.|+- -.+.|...
T Consensus 28 s~~YkdAYSRINaIVIEGEqeA~dNyi~-la~llP~--~~dEL~rLakME~rH~kgF~aCGrNL~V~pDm~fA~~fF~~L 104 (244)
T 2oc5_A 28 SDRYKDAYSRINAIVIEGEQEAHDNYIA-IGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL 104 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeeEechHHHHHhHHH-HHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 4667899999999999999888888763 6665544 44456677789999999998877777544432 11122211
Q ss_pred hhcHHHHHHHHHHHHHhhc---hHHHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 154 ENIPCVAQKAKWALDWIHS---SDSFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 154 ~~~p~l~~k~~~i~~~~~~---~~~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
...+.. ......+++... ++|.. ..++|-+.. .= .=|-..++-.-+.+||..|..||-
T Consensus 105 -------------H~nFq~A~~~gkv~TCLlIQaLiIE~F-AIaAYniYI--pV--AD~FARkITegVVkDEY~HLNfGe 166 (244)
T 2oc5_A 105 -------------RDNFQTALGQGKTPTCLLIQALLIEAF-AISAYHTYI--PV--SDPFARKITEGVVKDEYTHLNYGE 166 (244)
T ss_dssp -------------HHHHHHHHHTTCHHHHHHHHHTHHHHH-HHHHHHHHG--GG--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHhcCCeeehHHHHHHHHHHH-HHHHHhhcc--cc--ccHHHHHHHHhHHhhHHhhcchHH
Confidence 111111 112334444443 45542 223333321 00 012345678889999999999997
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhc-CCCcCCCCHHH-HHHHHHHHHHHHHHhCCCCC
Q 020108 230 LLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSL-MSQYIKFVADRLLVHIHQCS 294 (331)
Q Consensus 230 ~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~~-~~~~~Gl~~~~-~~~yi~y~an~~L~~lG~~~ 294 (331)
.-++.-. +-+++++.+.-++...+-.+.++..- +-.++||+++. +..|+- .-...|.++|++.
T Consensus 167 ~WLk~~f-~~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~MekealvedFmi-~YgEAL~~IGF~t 231 (244)
T 2oc5_A 167 AWLKANL-ESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLI-AYQESLTEIGFNT 231 (244)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHHTCCH
T ss_pred HHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 6543222 12234454444444444444444333 23688998754 556655 3456788899864
No 29
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Probab=96.46 E-value=0.0092 Score=57.62 Aligned_cols=157 Identities=9% Similarity=-0.014 Sum_probs=92.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHH
Q 020108 72 WERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLL-ETYIKDSKEKHRLF 150 (331)
Q Consensus 72 ~~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il-~~~~~d~~e~~~~f 150 (331)
|++||++=|..+.++++.++-++-.-...-. .+....|+-..+.-+..-..+|..|...+.+++ ++++.|..+ +.
T Consensus 98 WqemP~eYR~~LiRlI~~haDSEiagve~e~-~wi~~APSL~~k~~L~aiVqDE~gHg~~mlyllae~fG~Dr~e---~a 173 (481)
T 3pf7_A 98 WQEVPGEYRSTLRRIIVTQGDTEPASVEQQR-HLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGRE---EG 173 (481)
T ss_dssp BSSCCGGGHHHHHHHHHHHHHHHHHHHHHHT-TGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH---HH
T ss_pred hhhCCHHHHHHHHHHHHHHhhhHHhhchhhh-hHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHH---HH
Confidence 8899999999999999998887754332222 234456666666655566789999999888888 666543322 33
Q ss_pred HHHhhcHHHHHHHHHHHHHhh-chHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHH
Q 020108 151 NAIENIPCVAQKAKWALDWIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 229 (331)
Q Consensus 151 ~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~ 229 (331)
+....-..=..+.-.....++ ...+|+...+.-.++.+. +-..+..|.+.+. --++.+++.|+..|+.|...|-
T Consensus 174 d~LL~R~sGd~~~pk~L~~FNyPt~~WaD~~~f~~LvDrA----gi~qL~~L~~sSY-~PlARamr~I~kEEafH~~~Ge 248 (481)
T 3pf7_A 174 EALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRD----GKFQLASLAESAF-DPLARTCKFMLTEEAHHLFVGE 248 (481)
T ss_dssp HHHHHCCTTCSSSCCSSGGGSSCCCSHHHHHHHHHHTHHH----HHHHHHHHTTCSB-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccccccccccCCCCCHHHHHHHHHhhhHH----HHHHHHHHHhCCc-HHHHHHHHHHhhHHHHHHHHHH
Confidence 221100000000000001111 123454443322455664 3333334554433 3378889999999999999999
Q ss_pred HHHHHHHh
Q 020108 230 LLYSLLRK 237 (331)
Q Consensus 230 ~l~~~l~~ 237 (331)
..+..+..
T Consensus 249 ~gl~rli~ 256 (481)
T 3pf7_A 249 SGIARVIQ 256 (481)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766653
No 30
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=96.45 E-value=0.16 Score=47.75 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=93.4
Q ss_pred CCCCCcccCcccchHHHhcCCHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHhc--CC--hHHHHHHHHHHHHHHH
Q 020108 56 SFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFF-----AASDGIVLENLAARFLND--IQ--IPEARAFYGFQIAMEN 126 (331)
Q Consensus 56 ~~W~peeidl~~D~~d~~~L~~~Er~~~~~~la~l-----~~~D~~v~~~l~~~l~~~--i~--~~E~~~~l~~Q~~~E~ 126 (331)
.+|.|.+.-.--+-..|..||+++|..+.+--..- ...+.++.+-+...++.. .. ....+....+.+.+|+
T Consensus 58 ~~~~p~ellpl~gtp~w~~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei~DE~ 137 (336)
T 3chh_A 58 VPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDES 137 (336)
T ss_dssp SCSSCGGGCTTTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHHH
T ss_pred CCCCChhhccccCCHhHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 45666555544566779999999998776542222 233444443333444443 22 3444444366668999
Q ss_pred HHHHHHHHHHH----HhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhh-chHHHHHHHHHH---HHhHHHHHHhHHHHH
Q 020108 127 IHSEMYSLLLE----TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH-SSDSFAERLVGF---ACVEGIFFSGSFCAI 198 (331)
Q Consensus 127 iH~esYs~il~----~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~~---~~lEgi~f~s~F~~~ 198 (331)
.|+-++.+..+ ..+..|.- .+. .+.+-++.. ..+. .+..+-..++.+ .+.|.+.= .+ .
T Consensus 138 ~Hs~Mf~~~~~~~~~~~G~~~~~---~~p----~~~l~r~l~---~~la~~~~~~~~~l~~~a~~lvaEeiid--~~--~ 203 (336)
T 3chh_A 138 FHTYMHMLAIDRTRELRKISERP---PQP----ELVTYRRLR---RVLADMPEQWERDIAVLVWGAVAETCIN--AL--L 203 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC---CCC----CCHHHHHHH---HHHTTCCCHHHHHHHHHHHHHHHHHSBC--HH--H
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC---CCC----hHHHHHHHH---HHHccCchhhhhHHHHHHHHHHHHHHHH--HH--H
Confidence 99999999998 35432010 000 011111111 1121 122222222222 34565421 11 1
Q ss_pred HHHHHc-CCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH
Q 020108 199 FWLKKR-GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW 241 (331)
Q Consensus 199 ~~l~~~-g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~ 241 (331)
-.+.+. ++-|-+..+++.=.+||++|..|+..+++.+....++
T Consensus 204 r~~~~D~~vQP~vR~v~riHv~DEaRH~~fare~~~~~~~~l~~ 247 (336)
T 3chh_A 204 ALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNE 247 (336)
T ss_dssp HHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 123344 4444455555666899999999999999988877664
No 31
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=93.82 E-value=3 Score=36.10 Aligned_cols=150 Identities=18% Similarity=0.110 Sum_probs=101.6
Q ss_pred HHhcCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAME----NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~E----~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~l 180 (331)
+....++++.+..+...+..| ..|.+.|.+.++.++.++++ + ......|..+.-.+++.+...+. ++...+
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~e~~~~~~h~~l~~~~~~~~Gi~~~~---~-~~~~~~p~t~~y~~~~~~~~~~~-~~~~~l 135 (231)
T 1rcw_A 61 IHSRCDDLEARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEE---L-EAHEPSEAAKAKVATFMRWCTGD-SLAAGV 135 (231)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHH---H-HHCCCCHHHHHHHHHHHHHHTSS-CHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHcCCCHHH---H-hcCCCCHHHHHHHHHHHHHHcCC-CHHHHH
Confidence 445678899888888888888 68999999999999988765 2 23445677777778877766543 345555
Q ss_pred HHHHHhHHHHHHhHHH-HH-HHHHH-cCCC--CChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 020108 181 VGFACVEGIFFSGSFC-AI-FWLKK-RGLM--PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE 255 (331)
Q Consensus 181 v~~~~lEgi~f~s~F~-~~-~~l~~-~g~l--~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E 255 (331)
.++.+.|++.- ..+ .. -.+.. .+.. -+..---..+.-| ..|+..+..++..+.. ...+++.+.+..+.++|
T Consensus 136 aal~~~E~~~~--~~~~~~~~~~~~~~~wi~~~~~~~f~~h~~~d-~~h~~~~~~~l~~~~~-~~~~~~~~~~~~~~~le 211 (231)
T 1rcw_A 136 AALYSYESQIP--RIAREKIRGLTEYFGFSNPEDYAYFTEHEEAD-VRHAREEKALIEMLLK-DDADKVLEASQEVTQSL 211 (231)
T ss_dssp HHHHHHHTTHH--HHHHHHHHHHHHHSCCCSGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHCCCCChhhhHHHHHHHHHh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55444566531 111 10 01111 2433 2333444566667 4699999998888766 45678999999999999
Q ss_pred HHHHHhhc
Q 020108 256 TQFVCEAL 263 (331)
Q Consensus 256 ~~~~~~~~ 263 (331)
..|-+.++
T Consensus 212 ~~fwd~~~ 219 (231)
T 1rcw_A 212 YGFLDSFL 219 (231)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 99998766
No 32
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=91.93 E-value=2.7 Score=31.99 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=54.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 020108 73 ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145 (331)
Q Consensus 73 ~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e 145 (331)
.+||++.|+...-+-+..+-.+.+. +=..++...++|+++.++.-.+.+|..|.-.+-.+|..+ ||+.
T Consensus 11 ~~ls~~~~d~~rai~aL~~EleAI~---~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~--dp~~ 78 (95)
T 1zpy_A 11 QELSDETRDMHRAIISLREELEAVD---LYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAF 78 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHH
Confidence 4799999998877765555555443 434577889999999999999999999999999999987 6664
No 33
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=90.60 E-value=9.1 Score=35.55 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=90.2
Q ss_pred HHHhcCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAME-------NIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF 176 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E-------~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~ 176 (331)
.+....++++.+..+.....+| ..|.+.|..+++.++.+++ +......|....-.+.......+.. +
T Consensus 162 ~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~-----~~~~~~~p~~~~~v~~~~~~~~~~~-~ 235 (332)
T 3bjd_A 162 DLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD-----FQAVSTMPEEIAYLNNRARAFRHAE-V 235 (332)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC-----TTCCCCCHHHHHHHHHHHHHHHCSS-T
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChh-----HhcccCCHHHHHHHHHHHHHHhcCC-H
Confidence 3455778899888888877777 3679999999999988764 2333345655555555554444332 4
Q ss_pred HHHHHHHHHhHHHHHHhHHHHH-HHHHHcCCCC-ChHHHHHHHHhhhhhHH-HHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 020108 177 AERLVGFACVEGIFFSGSFCAI-FWLKKRGLMP-GLTFSNELISRDEGLHC-DFACLLYSLLRKRLHWQKVHHMVHEAVE 253 (331)
Q Consensus 177 ~~~lv~~~~lEgi~f~s~F~~~-~~l~~~g~l~-g~~~~i~~I~RDE~~H~-~f~~~l~~~l~~e~~~~~i~~l~~eave 253 (331)
...+.++.+.|+... .+|.-+ -.+.+.|.-+ +..---.+|.-|.. |. .....++..+.....+..+...+..+++
T Consensus 236 ~~alaal~~~E~~~p-~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~~-H~~~~~~~ll~~~~~~~~q~~~~~a~~~~l~ 313 (332)
T 3bjd_A 236 GWGLAVFYITELVVP-GNHEKLYRALLQAGLSEDQAEYYKVHISLVPP-RAKREWQLIARRIPDVQFQNAFLTSLSQHFR 313 (332)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC----CTTHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCcccchHHHHHHHHhHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455544567899754 344333 3566666533 55666788888984 88 3333333332211112234455555558
Q ss_pred HHHHHHHhhc
Q 020108 254 IETQFVCEAL 263 (331)
Q Consensus 254 ~E~~~~~~~~ 263 (331)
.+..|.+.++
T Consensus 314 ~~~~f~D~l~ 323 (332)
T 3bjd_A 314 VERAYYDAIW 323 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887655
No 34
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=83.61 E-value=24 Score=31.48 Aligned_cols=191 Identities=8% Similarity=0.024 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhhcHHHHH
Q 020108 84 SHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY-IK-DSKEKHRLFNAIENIPCVAQ 161 (331)
Q Consensus 84 ~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~-~~-d~~e~~~~f~~~~~~p~l~~ 161 (331)
.+.+..++-.+-+.+..+. ......|.-|.+.-++..+-+|.=|+..+-.+..++ +. |.++ + . +...+.
T Consensus 6 ~~~l~~laD~elil~~r~~-eW~~~AP~LEediAlanialDelGhar~ly~~a~~l~G~~~~D~---L-a-~~R~~~--- 76 (249)
T 1otk_A 6 TAYTLRLGDNCLVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDT---L-A-FTRDER--- 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHH---H-H-HSCCGG---
T ss_pred HHHHHHHhCHHHHhccccc-hHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH---H-H-HhcCHH---
Confidence 3344444444434443433 244567888999999999999999999999999998 65 3443 2 1 111110
Q ss_pred HHHHHHH-Hhh-chHHHHHHHHHHHHhHHHHHHhHHHHHHHHH-HcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 162 KAKWALD-WIH-SSDSFAERLVGFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 162 k~~~i~~-~~~-~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~-~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
++-+- .++ ...+|+..++- -+++.++..+.+-. .+.--+-++.+..+|++.|+.|..++...+..|...
T Consensus 77 --~frn~~l~e~P~gdwa~ti~r------~~l~d~~~~~~~~~L~~ss~~plA~ia~K~~kEe~yH~~h~~~w~~rL~~g 148 (249)
T 1otk_A 77 --QFSNLLLVEQPNGNFADTIAR------QYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNG 148 (249)
T ss_dssp --GCCCCGGGGSCCCSHHHHHHH------HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HhhccHHHcCCCCCHHHHHHH------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00000 011 12245444332 23445555544211 234467899999999999999999999887777632
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCC---------CcCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 020108 239 LHWQKVHHMVHEAVEIETQFVCEALPC---------ALIGMNSSLMSQYIKFVADRLLVHIHQC 293 (331)
Q Consensus 239 ~~~~~i~~l~~eave~E~~~~~~~~~~---------~~~Gl~~~~~~~yi~y~an~~L~~lG~~ 293 (331)
- ++-++.+.+|++.=-.++..+|+. .-++.+.+++++=-.-.....|..+|++
T Consensus 149 T--~Es~~r~Q~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~ 210 (249)
T 1otk_A 149 T--DVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN 210 (249)
T ss_dssp C--HHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCC
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 2 344566666666443344434421 1122455566655555777788888884
No 35
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=83.41 E-value=13 Score=28.22 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 020108 73 ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145 (331)
Q Consensus 73 ~~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e 145 (331)
.+||+..|+...-+.+.-.-+|.+ ++=...+...++|+++..+.-.+-+|-.|...+..+|+.+ ||..
T Consensus 11 e~Ls~e~~d~~Rai~sl~~EleAI---~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~--Dp~~ 78 (95)
T 3k6c_A 11 QELSDETRDMHRAIISLREELEAV---DLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAF 78 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHH
Confidence 479999888777665544444433 3334567789999999999999999999999999999976 6653
No 36
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=81.15 E-value=10 Score=34.36 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-DSKE 145 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~-d~~e 145 (331)
++.....+|-.+..++..+.+|++|..+|.++++.++. +|+.
T Consensus 168 n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~ 210 (275)
T 1za0_A 168 NLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDE 210 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 45678899999999999999999999999999998763 4444
No 37
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=79.50 E-value=30 Score=29.95 Aligned_cols=148 Identities=9% Similarity=-0.024 Sum_probs=86.5
Q ss_pred hcCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 020108 107 NDIQIPE--ARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFA 184 (331)
Q Consensus 107 ~~i~~~E--~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~ 184 (331)
...++++ .+..+...+..|..|-..+-+-+..++.++++ .......|..+.-.+++........ +...+.+..
T Consensus 64 ~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~G~~~~~----~~~~~~~pat~aY~~~l~~~a~~~~-~~~~la~~~ 138 (239)
T 3dde_A 64 IMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDRED----VLSSKPLPATETLIAYLYWISATGN-PVQRLGYSY 138 (239)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHH----HHTCCCCHHHHHHHHHHHHHHHSSC-GGGGHHHHH
T ss_pred HhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHhCCCHHH----HHhCCCChHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 3456655 77777777777777776665668888877655 3334557877777777776554322 233344456
Q ss_pred HhHHHHHHhHHHHHHHHHHc-CCCCC--hHHHHHHHHhhhhhHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHH
Q 020108 185 CVEGIFFSGSFCAIFWLKKR-GLMPG--LTFSNELISRDEGLHCDFACLLYSLLR-KRLHWQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 185 ~lEgi~f~s~F~~~~~l~~~-g~l~g--~~~~i~~I~RDE~~H~~f~~~l~~~l~-~e~~~~~i~~l~~eave~E~~~~~ 260 (331)
++|++. -.+=...-.+.+. | +|. +.=..-...-|+ -|..+...+++.+. ..-..+.|.+..+.++++...+.+
T Consensus 139 ~~E~~y-~~~~~~~~~l~~~~~-l~~~~~~f~~~h~~~d~-~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~ 215 (239)
T 3dde_A 139 WAENVY-GYIDPVLKAIQSTLD-LTPQSMKFFIAHSKIDA-KHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILD 215 (239)
T ss_dssp HHHTCH-HHHHHHHHHHHHHTT-CCGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh-HHHHHHHHHHHHHhC-cCHHHHHHHHHHHhcch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789984 2221122233333 4 343 232323333455 68888777777764 233345666777777777776665
Q ss_pred hh
Q 020108 261 EA 262 (331)
Q Consensus 261 ~~ 262 (331)
.+
T Consensus 216 ~l 217 (239)
T 3dde_A 216 DV 217 (239)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=75.31 E-value=32 Score=28.13 Aligned_cols=134 Identities=12% Similarity=0.054 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHhhcHHHHHH
Q 020108 86 VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSK---EKHRLFNAIENIPCVAQK 162 (331)
Q Consensus 86 ~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~---e~~~~f~~~~~~p~l~~k 162 (331)
+|.....++.--..... .++..+++|+++..+..-+.+|..|.+.+..++..+.++.. ....++..+. |.
T Consensus 24 ~L~~A~~~E~~a~~~Y~-~~A~~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~~~~~~~~~--~~---- 96 (175)
T 2fzf_A 24 LLGMAIKAEIGAREFYK-SLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQ--PV---- 96 (175)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCC--CC----
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhhh--hh----
Confidence 44444444444334443 47778899999999999999999999999999987643210 0000111000 00
Q ss_pred HHHHHHHhhchHHHHHHHHHHH-Hh--HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 163 AKWALDWIHSSDSFAERLVGFA-CV--EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 163 ~~~i~~~~~~~~~~~~~lv~~~-~l--Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
...+....+.... +..+ -. +++-||..++-. -.=|.+..+++.|.+||..|......++..+..
T Consensus 97 ----~~~~~~~~~~~~~-L~~ai~~E~~a~~~Y~~~a~~------~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l~~ 163 (175)
T 2fzf_A 97 ----ARELEKVQDIIDL-IRWAMKAEEIAAEFYLKLEEM------VKEEEKKRLMRYLADMERGHYYTLRAEYELLLN 163 (175)
T ss_dssp ----CSCCCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHhccccCCHHHH-HHHHHHHHHHHHHHHHHHHhh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000011111111 1111 12 233333333322 122789999999999999999988777766543
No 39
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=69.99 E-value=49 Score=27.88 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=69.4
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHhhcHHHHHHHHHHHHHh-hchHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS-----KEKHRLFNAIENIPCVAQKAKWALDWI-HSSDSFA 177 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~-----~e~~~~f~~~~~~p~l~~k~~~i~~~~-~~~~~~~ 177 (331)
..+..-.-+++...+...+..|..|++-|..++..+-.+. ...+ +.. -...|. ..+ ++.+++-
T Consensus 49 ~~A~~EG~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~-~v~-~~~~p~---------~~~~~T~eN~~ 117 (179)
T 3qhb_A 49 EIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKR-LVS-TIESQI---------DAVASDSRGLR 117 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHH-HHH-HHHHTH---------HHHHHSHHHHH
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc-ccc-cccccc---------cccCcHHHHHH
Confidence 3445556688899999999999999999999887653331 1100 110 111121 011 1222211
Q ss_pred HHHHHHHHhHH---HHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 178 ERLVGFACVEG---IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 178 ~~lv~~~~lEg---i~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
+.|-.-.--|. .--|..|+- .++.-=.+.++..++.|.+||..|......++..+.
T Consensus 118 ~~L~~A~~GE~~E~~~mYp~fA~---~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l~ 176 (179)
T 3qhb_A 118 RALETALEVETIESQKTYPAFAK---LAAEQGNMEVATAFEAIVKSETKHANWVKRALENLL 176 (179)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222 222333433 355444789999999999999999998888877664
No 40
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=69.62 E-value=53 Score=28.08 Aligned_cols=113 Identities=12% Similarity=-0.051 Sum_probs=65.5
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hHHHHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLVGF 183 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~~ 183 (331)
.+..-.-+++..++..++..|..|++-|..++..+..++. + .+ .|. ..+.+ .+++ +. .
T Consensus 53 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~----i--~~--~p~---------~~~gst~enL-~~---a 111 (202)
T 1yuz_A 53 AAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE----K--PT--VAA---------PSAYSCDLNL-IS---G 111 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC----C--CC--C-----------CCCCCHHHHH-HH---H
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce----e--cc--CCc---------cCCCCHHHHH-HH---H
Confidence 4445556889999999999999999999999998755432 1 11 011 00000 1111 00 0
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
.--|.--....+.-+.-.++.--...++..+++|.++|..|......++..+...
T Consensus 112 ~~gE~~E~t~my~~~a~~A~eEgd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~~ 166 (202)
T 1yuz_A 112 ANGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDAP 166 (202)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111111111122222234433457889999999999999999888777666533
No 41
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=66.24 E-value=70 Score=28.26 Aligned_cols=150 Identities=11% Similarity=-0.087 Sum_probs=96.0
Q ss_pred HHhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAMEN-IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~E~-iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
.....++++...++..++.... .....+..+++.++.++++ .......|.-+.-.+++.....+. ++...++++
T Consensus 85 a~aka~~~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~----l~~~~~~pat~aYt~~l~~~a~~g-~~~~~laAl 159 (263)
T 2qcx_A 85 GAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEE----RKAFKPSPTAYSFTSHMYRSVLSG-NFAEILAAL 159 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HHSCCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3345677887777777654432 2455666667888877665 333455677777788887655433 466777777
Q ss_pred HHhHHHHHHhHHHHHHHHHHcCCCCC--hHHHHHHHHhhh-hhHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHHH
Q 020108 184 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDE-GLHCDFACLLYSLLRKRLHW---QKVHHMVHEAVEIETQ 257 (331)
Q Consensus 184 ~~lEgi~f~s~F~~~~~l~~~g~l~g--~~~~i~~I~RDE-~~H~~f~~~l~~~l~~e~~~---~~i~~l~~eave~E~~ 257 (331)
..+|.++...|- .+.+... |. ..+=|+.=.-+| .-|+.....+++.+....++ +++.+++..++++|..
T Consensus 160 ~pC~w~Y~~ig~----~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~~~~~~l~~~F~~a~~lE~~ 234 (263)
T 2qcx_A 160 LPCYWLYYEVGE----KLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQ 234 (263)
T ss_dssp HHHHHHHHHHHH----HHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 677776543331 2333322 43 123333333455 57899999998888655443 4688999999999999
Q ss_pred HHHhhcC
Q 020108 258 FVCEALP 264 (331)
Q Consensus 258 ~~~~~~~ 264 (331)
|-+..+.
T Consensus 235 Fwd~a~~ 241 (263)
T 2qcx_A 235 FWGMAYR 241 (263)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988773
No 42
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=64.44 E-value=77 Score=28.07 Aligned_cols=141 Identities=11% Similarity=-0.024 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH-HhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020108 112 PEARAFYGFQIAMENI-------HSEMYSLLLE-TYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF 183 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~i-------H~esYs~il~-~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~ 183 (331)
++...-+..=..+|.= |.+.|.+.++ .++.|++.+ ...|.-++-++-+.+++ +.+. ..++-++
T Consensus 72 ~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~~-------~p~~sT~~~idt~~~lc-s~d~-~~aLGA~ 142 (244)
T 3b5o_A 72 NGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKNT-------MPSVATSKLLRTVLSLF-DRQV-DYVLGAT 142 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTTC-------CCCHHHHHHHHHHHHHH-TSCH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCcccc-------CCCchHHHHHHHHHHHh-CCCH-HHHHHHH
Confidence 5545555555566654 9999999999 999887652 33355555666677777 4332 4555566
Q ss_pred HHhHHHHHHh-HHH-HH-HHHHHcCCCCC-hHHHHHHHHh-hhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 020108 184 ACVEGIFFSG-SFC-AI-FWLKKRGLMPG-LTFSNELISR-DEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258 (331)
Q Consensus 184 ~~lEgi~f~s-~F~-~~-~~l~~~g~l~g-~~~~i~~I~R-DE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~ 258 (331)
+.+|++.-+- -++ -+ -.|.+.+ .|- .-.-+++=.. +|.-|..--..++....+......+.+-+..+++....|
T Consensus 143 yatE~iaipe~~ly~~li~gL~~~~-~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~~~~eef~~~~~G~~~~Lda~~~f 221 (244)
T 3b5o_A 143 YAIEATSIPELTLIVKLVEWLHEGA-IPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVW 221 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSC-CCHHHHHHHHHHHC-------CHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhCC-CchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 6889984431 122 11 2343343 333 2233333334 778888877777665544444577777788888877766
Q ss_pred HHhh
Q 020108 259 VCEA 262 (331)
Q Consensus 259 ~~~~ 262 (331)
-+.+
T Consensus 222 WdgL 225 (244)
T 3b5o_A 222 WQEL 225 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 43
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=59.69 E-value=96 Score=27.62 Aligned_cols=142 Identities=15% Similarity=0.054 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHH-HHhHHHH
Q 020108 112 PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF-ACVEGIF 190 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~-~~lEgi~ 190 (331)
.+++.++...+..|..|.+.+..+.+.++.++++ + ......|.-..-..++.+.... .++...+.+. ..+|+..
T Consensus 89 ~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~ee---l-~~~~~~P~~~aYt~~ml~~a~~-g~l~e~lAAl~ya~e~~i 163 (262)
T 3oql_A 89 DMARRWLMRNIRVELNHADYWVNWCAAHDVTLED---L-HDQRVAPELHALSHWCWQTSSS-DSLAVAMAATNYAIEGAT 163 (262)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHH---H-HHTCSCGGGGHHHHHHHHHHHH-SCHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHH---H-hcCCCChHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHh
Confidence 3677888777778888999999999999887776 3 3344556655666666544322 2345555544 3444442
Q ss_pred HHhHHHHHHHHHHcCC----CCChH---HHHHHH---HhhhhhHHHHHHHHHHHHHhhc-h---HHHHHHHHHHHHHHHH
Q 020108 191 FSGSFCAIFWLKKRGL----MPGLT---FSNELI---SRDEGLHCDFACLLYSLLRKRL-H---WQKVHHMVHEAVEIET 256 (331)
Q Consensus 191 f~s~F~~~~~l~~~g~----l~g~~---~~i~~I---~RDE~~H~~f~~~l~~~l~~e~-~---~~~i~~l~~eave~E~ 256 (331)
---+= -...|+ .++.. ...+|| ..-...|..-...+++.+.... + .+++.+.+..+.+.|.
T Consensus 164 g~~s~-----~~~~g~~~~~~~~~~~~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~~~~~~~e~~~~~~a~~~S~~~~~ 238 (262)
T 3oql_A 164 GEWSA-----VVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAELRQAVTKSYDYMY 238 (262)
T ss_dssp HHHHH-----HHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-----HhhhhHHHhcCCCcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 21000 001121 11111 122222 2233479999999999888533 3 4568888999999999
Q ss_pred HHHHhhc
Q 020108 257 QFVCEAL 263 (331)
Q Consensus 257 ~~~~~~~ 263 (331)
.|.+..+
T Consensus 239 ~fld~~y 245 (262)
T 3oql_A 239 LFLERCI 245 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998777
No 44
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=58.83 E-value=48 Score=30.86 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYI 140 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~ 140 (331)
.++....+|-.+..++..+.+|++|-.+|.++++.++
T Consensus 183 r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~l 219 (338)
T 2uw1_A 183 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLA 219 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999999999999999999999775
No 45
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=58.16 E-value=98 Score=27.25 Aligned_cols=142 Identities=11% Similarity=-0.079 Sum_probs=85.7
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 020108 106 LNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFAC 185 (331)
Q Consensus 106 ~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~ 185 (331)
+...++ +....+..++.... . +.+..+++.++.++++ + ....|.-+.-.+++.....+. ++...++++..
T Consensus 106 ~aka~~-~~~~~~~~~~~~~~-~-~lh~~~~~~~Gi~~~~---~---~~~~pat~aYt~~ll~~a~~g-~~~~~laAl~p 175 (258)
T 2a2m_A 106 ATCAQD-ETLREFFKAKAKSY-D-EYNETYHQTWHLREAS---G---LIPGTDIKDYADYEAYVAGSL-ASPYMCVVMLP 175 (258)
T ss_dssp HHTCSS-HHHHHHHHHHHHHH-H-HHHHHHHHTSCBCCGG---G---BCCCHHHHHHHHHHHHHHHHS-CTHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHH-H-HHHHHHHHHcCCCHHH---c---cCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 344555 54444444433321 1 5556677877766555 2 445577777777776544322 36677777666
Q ss_pred hHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHH---hhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhh
Q 020108 186 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262 (331)
Q Consensus 186 lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~---RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~~~ 262 (331)
++.++...|- .+.+... |. .---+||. .|| -++.....++..+..+.+.+++.+++..++++|..|-+..
T Consensus 176 C~~~Y~eig~----~l~~~~~-~~-~~Y~~WI~~~Y~~~-~~v~~~~~lld~~~~~~~~~~l~~~F~~a~~lE~~Fwd~a 248 (258)
T 2a2m_A 176 CEYLWPWIAN----FLDGYTP-TN-SLYRFWIEWNGGTP-NGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSS 248 (258)
T ss_dssp HHHHHHHHHH----HHGGGSC-TT-STTHHHHHHHCSCC-HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HHHhccC-CC-chHHHHHHhccCCH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665443331 2222211 22 12245666 777 6777777777766555567789999999999999999877
Q ss_pred cC
Q 020108 263 LP 264 (331)
Q Consensus 263 ~~ 264 (331)
+.
T Consensus 249 ~~ 250 (258)
T 2a2m_A 249 TI 250 (258)
T ss_dssp TC
T ss_pred hh
Confidence 73
No 46
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=57.05 E-value=42 Score=30.17 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=69.5
Q ss_pred CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcHHHHHHH------HHH--------------
Q 020108 109 IQIPEA-RAFYGFQIAMENIHSEMYSLLLETYIKD-SKEKHRLFNAIENIPCVAQKA------KWA-------------- 166 (331)
Q Consensus 109 i~~~E~-~~~l~~Q~~~E~iH~esYs~il~~~~~d-~~e~~~~f~~~~~~p~l~~k~------~~i-------------- 166 (331)
++.++. +..+.-.+.+|--|.|..+.++..+..+ +-+.++. ..+|.+.+-. .++
T Consensus 49 ~~~~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a----~~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~ 124 (266)
T 1o9i_A 49 STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDL----KRDPSLATTMAGMDPEHSLVHGLNASLNNPNGA 124 (266)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHH----HHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCC
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhc----ccchhhHhhhcCCChHHHHhcCCCCCccCCCCC
Confidence 345688 8889999999999999999999999653 2111111 1123221111 011
Q ss_pred ---HHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 167 ---LDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 167 ---~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
..++...-++..-+......|.-- -..+.-++.+... |++.+++.+|..||..|..-....++.+..
T Consensus 125 pWt~~yv~~~Gdl~aDL~~niaaE~~A-r~~Y~rl~~~tdD---p~vkd~L~fLi~RE~~H~~~f~~aLe~l~~ 194 (266)
T 1o9i_A 125 AWNAGYVTSSGNLVADMRFNVVRESEA-RLQVSRLYSMTED---EGVRDMLKFLLARETQHQLQFMKAQEELEE 194 (266)
T ss_dssp BCBGGGCCCCSCHHHHHHHHHHHHHHH-HHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111112223333333444321 1122222222233 899999999999999999988888877753
No 47
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=54.23 E-value=32 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 020108 208 PGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 208 ~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~~~ 260 (331)
.-.-++|.-|.+||-.|...+..++. .. +++...+-+..|+..|.+-.+
T Consensus 61 ee~k~iI~eIr~DE~rH~~~F~~lY~---TG-~p~sY~eGL~~A~~~Eqeave 109 (115)
T 2hz8_A 61 PEKRQVIDKILEDEEKHIEWLKAASK---QG-NAEQFASLVQQILQDEQRHVE 109 (115)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHH---SS-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hC-ChHhHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999988 33 445667777888888876554
No 48
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=50.43 E-value=1e+02 Score=25.02 Aligned_cols=107 Identities=13% Similarity=-0.029 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHH
Q 020108 110 QIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGI 189 (331)
Q Consensus 110 ~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi 189 (331)
.-+....++..++.+|..|.+.+...+..+++.|.-. .+...+. -.+....++.. .-.|.
T Consensus 41 ~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~-----~~~~~~~-----------~~~~~e~l~~a---l~~E~- 100 (179)
T 1nfv_A 41 DYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQ-----KEGKVVT-----------GQAVPVIYESD---ADQED- 100 (179)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC-----CSSCCCC-----------SCCHHHHHHHH---HHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCC-----CCCcCCC-----------CCCHHHHHHHH---HHHHH-
Confidence 3488999999999999999999999998887654210 0000000 00111111111 11111
Q ss_pred HHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 190 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 190 ~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
.....+.-+...+....=+.+...+.++..||..|......++..+.
T Consensus 101 ~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l~ 147 (179)
T 1nfv_A 101 ATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK 147 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222223333333488999999999999999987777766554
No 49
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=47.51 E-value=78 Score=23.85 Aligned_cols=54 Identities=7% Similarity=-0.066 Sum_probs=38.6
Q ss_pred HHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 176 FAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 176 ~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
+.+++.+.. =+|.|.+|...+.. -.-|.+..++.-|+.||-.|.+-...+++.+
T Consensus 20 ~~Rai~sl~~EleAI~~Y~q~a~~------~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~ 74 (95)
T 3k6c_A 20 MHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555443 37888777665544 4558899999999999999999766664443
No 50
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=45.29 E-value=1.2e+02 Score=27.21 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=50.5
Q ss_pred cCCCCCcccCcccchH-HHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 020108 55 ASFWTAEEVDLSQDVQ-HWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMY 132 (331)
Q Consensus 55 ~~~W~peeidl~~D~~-d~~-~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esY 132 (331)
..-|++.-|.-+.|.. |.. ++..+.+. +..-.++...+.+|.++-.+.+-+.+|.+|...|
T Consensus 123 G~pWt~~yv~~~Gdl~aDL~~niaaE~~A-----------------r~~Y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f 185 (266)
T 1o9i_A 123 GAAWNAGYVTSSGNLVADMRFNVVRESEA-----------------RLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQF 185 (266)
T ss_dssp CCBCBGGGCCCCSCHHHHHHHHHHHHHHH-----------------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCCCHHHHHHHHHHHHHHH-----------------HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Confidence 4689999998887765 222 33322221 1122357788899999999999999999999999
Q ss_pred HHHHHHh
Q 020108 133 SLLLETY 139 (331)
Q Consensus 133 s~il~~~ 139 (331)
...++.+
T Consensus 186 ~~aLe~l 192 (266)
T 1o9i_A 186 MKAQEEL 192 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 51
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=43.46 E-value=1.7e+02 Score=25.57 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 020108 77 DSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENI 156 (331)
Q Consensus 77 ~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~ 156 (331)
+.....+..+|+.++.++-.....++. =+...|+-..|.-++..+..|.-|-+.-...+...+.|+.+ ...-+.
T Consensus 10 ~~~~~~v~~llg~lAygel~AF~RLa~-da~~AP~L~~r~ala~mAaae~~hf~~L~~~l~~~G~D~~~---am~pf~-- 83 (225)
T 3ez0_A 10 ARYNRFVADLFGMMAYGELSAFERFSA-DARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAED---AMLPFQ-- 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH---HHGGGH--
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHH--
Confidence 344557778899999998777766664 34677777889999999999999999999999999888876 222111
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 157 PCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 157 p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
+.+ -+|- .-..+.+|.++++--++.-|+.- -|+.- -..++-|.+...+.-+.. +.-|..|...-++...
T Consensus 84 ~~l---d~fh--~~T~P~dW~E~LvKaYVgdgla~--DFy~~---ia~~L~~~~r~~v~~vL~-~~~~~~f~v~~vraai 152 (225)
T 3ez0_A 84 AAV---DYFH--SRTRPADWYESLMKAYVIDTVSA--DFYRA---ISRYVDAGTRDVIEQIQA-SDETTEVLRERLRSAL 152 (225)
T ss_dssp HHH---HHHH--HTCCCSSHHHHHHHHHHHHHHHH--HHHHH---HTTTSCHHHHHHHHHHSC-CHHHHHHHHHHHHHHH
T ss_pred HHH---HHHH--hcCCCCChHHHHHHHHHHhhHHH--HHHHH---HHhhCCHHHHHHHHHHhc-cccchHHHHHHHHHHH
Confidence 111 0000 01145668888887777666632 22221 134555678888888886 4559999988887666
Q ss_pred hhchHH------HHHHHHHHHHHHHHHHHH------hhcCCCcCCCC-----HHHHHHHHHHHHHHHHHhCCCC
Q 020108 237 KRLHWQ------KVHHMVHEAVEIETQFVC------EALPCALIGMN-----SSLMSQYIKFVADRLLVHIHQC 293 (331)
Q Consensus 237 ~e~~~~------~i~~l~~eave~E~~~~~------~~~~~~~~Gl~-----~~~~~~yi~y~an~~L~~lG~~ 293 (331)
...+.- .-+.++-|++-.-..... .++++. ++. ...+-..+.-...+||..||+.
T Consensus 153 ~aDp~l~sRLaLWgRRLvGEAL~qaQ~vla~~~~L~~l~~g~--dl~~~~~~v~~lf~~l~~~H~~RM~~LGL~ 224 (225)
T 3ez0_A 153 ADDPRLASRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGE--DSAAAKELVSGLIAGLAEKHSKRMTQLGLT 224 (225)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hcCchhhhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcCC--CcchhhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 553321 234555555544333221 112111 323 2567777888899999999985
No 52
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=43.27 E-value=1.2e+02 Score=24.46 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020108 84 SHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139 (331)
Q Consensus 84 ~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~ 139 (331)
..++..-..++.-....+ ..++..+++++++..+...+.+|..|.+.+..+++.+
T Consensus 107 ~~~L~~ai~~E~~a~~~Y-~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l 161 (175)
T 2fzf_A 107 IDLIRWAMKAEEIAAEFY-LKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454433333 3567777889999999999999999999988888766
No 53
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=42.42 E-value=1.4e+02 Score=27.22 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=51.9
Q ss_pred hcCCCCCcccCcccchHH-Hh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 020108 54 QASFWTAEEVDLSQDVQH-WE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEM 131 (331)
Q Consensus 54 ~~~~W~peeidl~~D~~d-~~-~L~~~Er~~~~~~la~l~~~D~~v~~~l~~~l~~~i~~~E~~~~l~~Q~~~E~iH~es 131 (331)
..+-|++.-|.-+.|... .. ++..+.+. +..-.+++..+.+|.++-.+.+-+.+|.+|...
T Consensus 129 ~G~pWta~Yv~~~Gdl~aDL~~NiaAE~~A-----------------r~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~ 191 (302)
T 2v8t_A 129 MGEHWNGEYVFTSGNLILDLLHNFFLEVAA-----------------RTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAA 191 (302)
T ss_dssp TSCBCBGGGCCCCSCHHHHHHHHHHHHHHH-----------------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhcCCCCHHHHHHHHHHHHHHH-----------------HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Confidence 347899999988887652 22 33322221 111235778889999999999999999999999
Q ss_pred HHHHHHHhc
Q 020108 132 YSLLLETYI 140 (331)
Q Consensus 132 Ys~il~~~~ 140 (331)
|...++.+.
T Consensus 192 f~~ALe~l~ 200 (302)
T 2v8t_A 192 YGKALESLT 200 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999983
No 54
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=41.16 E-value=1e+02 Score=23.17 Aligned_cols=55 Identities=7% Similarity=-0.062 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 020108 175 SFAERLVGFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 235 (331)
Q Consensus 175 ~~~~~lv~~~-~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l 235 (331)
++.+++.+.. =+|+|-+|...+.. -.-|.+..+..-|+.+|-.|++-...+++.+
T Consensus 19 d~~rai~aL~~EleAI~~Y~q~A~~------t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555655543 38999888776655 4558899999999999999999666554443
No 55
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.76 E-value=1.5e+02 Score=24.39 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=60.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 020108 103 ARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (331)
Q Consensus 103 ~~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (331)
...+..-.-|++...+..++..|..|++-+-..|..+ +++.+ .|+.-++ .+..
T Consensus 29 A~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~i-~~t~e------------nL~~a~~--------gE~~------ 81 (170)
T 3pwf_A 29 AEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL-GKTPE------------NLQMGIE--------GETF------ 81 (170)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCHHH------------HHHHHHH--------HHHH------
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChHH------------HHHHHHH--------hHHH------
Confidence 3455566678999999999999999998765554322 11111 1111110 0000
Q ss_pred HHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 183 ~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
|..-.|..|+- .++.--.+.++..+++|.+||..|......++..+..
T Consensus 82 ----e~~~mY~~~a~---~A~eeg~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~~ 129 (170)
T 3pwf_A 82 ----EVEEMYPVYNK---AAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK 129 (170)
T ss_dssp ----HHHTHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111112222 2333335788899999999999999988888777753
No 56
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=39.22 E-value=1.5e+02 Score=23.77 Aligned_cols=109 Identities=14% Similarity=-0.047 Sum_probs=63.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhH
Q 020108 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVE 187 (331)
Q Consensus 108 ~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lE 187 (331)
...-+....++..|+.+|..|++.+...+..+++.|.-. .+...+. + .+....++.. .-.|
T Consensus 36 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~-----~i~~~~~----------~-~~~~e~l~~a---l~~E 96 (174)
T 3qb9_A 36 NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQ-----RIGSLRI----------G-QTLREQFEAD---LAIE 96 (174)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS-----CCCCCCC----------C-SSHHHHHHHH---HHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccc-----CCCCCCC----------C-CCHHHHHHHH---HHHH
Confidence 344478889999999999999999999998887654321 0111100 0 0111111111 1111
Q ss_pred HHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 188 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 188 gi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
.- ....+--+...++...=++++..++++.+||..|.......++.+.
T Consensus 97 ~~-~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i~ 144 (174)
T 3qb9_A 97 YD-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (174)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222333444444588999999999999999988777666554
No 57
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=37.40 E-value=1.9e+02 Score=24.45 Aligned_cols=144 Identities=10% Similarity=-0.109 Sum_probs=87.0
Q ss_pred HHhcCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAM----ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~----E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~l 180 (331)
.....++++...++..++.. |.- .+..+++.++.++++ .......|.-+.-.+++.....+. ++...+
T Consensus 66 ~~~ka~~~~~~~~l~~~~~~~i~~E~~---lh~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~l 137 (221)
T 2gm8_A 66 AASRAPSVDLMKTALELAYGTVTGEMA---NYEALLKEVGLSLRD----AAEAEPNRVNVSYMAYLKSTCALE-GFYQCM 137 (221)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTHHH---HHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhcC-CHHHHH
Confidence 34456778777776665433 542 233346888777665 333555677777778777654432 466777
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHcCC-CCChHHHHHHHH---hhh-hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 020108 181 VGFACVEGIFFSGSFCAIFWLKKRGL-MPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIE 255 (331)
Q Consensus 181 v~~~~lEgi~f~s~F~~~~~l~~~g~-l~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E 255 (331)
+++..+|.+....|- .+.+... .|+ .---+||. -+| .-|+.....+++.+ ....+++.+++..+++.|
T Consensus 138 aAl~pc~~~Y~~ig~----~l~~~~~~~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~f~~a~~lE 210 (221)
T 2gm8_A 138 AALLPCFWSYAEIAE----RHGGKLRENPV-HVYKKWASVYLSPEYRGLVERLRAVLDSS--GLSAEELWPYFKEASLYE 210 (221)
T ss_dssp HHHHHHHHHHHHHHH----HHGGGGGGCCC-HHHHHHHHHHHSHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH----HHHhccCCCCC-chHHHHHHHhCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 777777776544332 2222211 133 22234443 344 45777666666655 334568999999999999
Q ss_pred HHHHHhhc
Q 020108 256 TQFVCEAL 263 (331)
Q Consensus 256 ~~~~~~~~ 263 (331)
..|-+..+
T Consensus 211 ~~Fwd~a~ 218 (221)
T 2gm8_A 211 LEFWQAAY 218 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987655
No 58
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=36.72 E-value=2.4e+02 Score=26.04 Aligned_cols=112 Identities=9% Similarity=-0.019 Sum_probs=60.5
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhh-hHHHHHHHHHHHHHhhchHHHHHHHHHH--
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG-LHCDFACLLYSLLRKRLHWQKVHHMVHE-- 250 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~-~H~~f~~~l~~~l~~e~~~~~i~~l~~e-- 250 (331)
.+..+++++ +.++++.--.+-..+.... .-|.........+--|+ +|....+.++.++......+++.+.+.+
T Consensus 74 ~~~~~vl~f~~~~Dsiv~~~~~~~~~~~v---~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~~~~e~~~~f~~~~~~p 150 (350)
T 4dr0_A 74 DTYMKVLAGLTLLDTEQGNTGMPIVAEHV---DGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNK 150 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHS---CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHhcCH
Confidence 456677776 5788876533332322121 12667777788888999 9999999999999732222333332221
Q ss_pred HHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 020108 251 AVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVHIHQ 292 (331)
Q Consensus 251 ave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~ 292 (331)
.+..-.+|+...+.. ...-+ .-.-+.+.+|..+++.+=+
T Consensus 151 ~l~~Ka~~i~~~y~~-~~~~~--~~~~~~~lva~~~lEGi~F 189 (350)
T 4dr0_A 151 YLQKKAQMIVGLYKA-IQKDD--EISLFKAMVASVYLESFLF 189 (350)
T ss_dssp HHHHHHHHHHHHHHT-CCTTC--HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHh-ccCcc--hHHHHHHHHHHHHHHHHHH
Confidence 222234555444421 11111 1223334556667777643
No 59
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=34.62 E-value=1.5e+02 Score=22.63 Aligned_cols=100 Identities=15% Similarity=-0.024 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhHHHHH
Q 020108 112 PEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFF 191 (331)
Q Consensus 112 ~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f 191 (331)
+....++..|+.+|..|.+.+...+..+++.|.-. ....+ . ..+....++..+.. --+.+-+
T Consensus 42 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~------~~~~~----------~-~~~~~e~l~~~l~~-E~~~~~~ 103 (149)
T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTI------PLRVK----------Q-AEDVREMLEYARQS-EYETIKR 103 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC------CCCCC----------C-CSSHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC------CCCCC----------C-CCCHHHHHHHHHHH-HHHHHHH
Confidence 57888999999999999999999888887655320 00000 0 00111111111110 0011111
Q ss_pred HhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHH
Q 020108 192 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232 (331)
Q Consensus 192 ~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~ 232 (331)
+--+...+....=++++..+..+.+||..|.......+
T Consensus 104 ---~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l 141 (149)
T 2qqy_A 104 ---YEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLL 141 (149)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222233333347899999999999999998766544
No 60
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=34.33 E-value=1.9e+02 Score=24.13 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=26.7
Q ss_pred HHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHH
Q 020108 200 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234 (331)
Q Consensus 200 ~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~ 234 (331)
++.+.| +||+++-+...+.+|.-|..-....++.
T Consensus 35 ~f~~~~-l~g~a~~f~~~A~EE~~HA~~l~~~i~~ 68 (189)
T 3uno_A 35 YFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLD 68 (189)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667 9999999999999999999855544433
No 61
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=34.01 E-value=1.8e+02 Score=23.20 Aligned_cols=104 Identities=12% Similarity=0.022 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhh-chHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIH-SSDSFAERLVG 182 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~-~~~~~~~~lv~ 182 (331)
..+..-.-|++..++..++..|..|++-+-.+|..++ +|.. ..| +. +.+++..+
T Consensus 36 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~~-~p~~---------~~~------------~~~T~enL~~A--- 90 (144)
T 4di0_A 36 SKADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAVG-DPAT---------GLP------------FGTSRQNLQSA--- 90 (144)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CTTT---------SCC------------CSSHHHHHHHH---
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Cccc---------CCC------------CCcHHHHHHHH---
Confidence 3444445688999999999999999998877776542 4310 000 00 01111111
Q ss_pred HHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHH
Q 020108 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 233 (331)
Q Consensus 183 ~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~ 233 (331)
..-|.--....|..+...++.-=.+.++..++.|.+||..|......++.
T Consensus 91 -~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~ 140 (144)
T 4di0_A 91 -IAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALD 140 (144)
T ss_dssp -HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111011212222334333689999999999999999997776654
No 62
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=32.93 E-value=2e+02 Score=23.54 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=39.7
Q ss_pred HHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------hH--HHHHHHHHHHHHHHHHHHH
Q 020108 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------HW--QKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 201 l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~~--~~i~~l~~eave~E~~~~~ 260 (331)
+...| ++|++..++-...+|.-|..-....++.+-..+ +. ..+.++++.+++.|...+.
T Consensus 36 ~~~~g-f~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~ 104 (189)
T 3oj5_A 36 FDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35567 999999999999999999987776666553221 11 2355666666666665443
No 63
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=32.08 E-value=2.2e+02 Score=23.74 Aligned_cols=137 Identities=7% Similarity=-0.084 Sum_probs=85.6
Q ss_pred hcCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHH
Q 020108 107 NDIQIPEARAFYGFQIA----MENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVG 182 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~----~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~ 182 (331)
... +++....+..++. .|.-|-+ .+++.++.++++ .......|.-+.-.+++.+...+ ++...+++
T Consensus 64 ~ka-~~~~~~~~~~~~~~~i~~E~~~h~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~--~~~~~~aA 133 (214)
T 2qzc_A 64 SKG-PIDKVTKILNLVFSSRDKGLETHG---KLYSKLDISRDV----IVKTGYNLINYAYTRHLYYYANL--DWNKFLVA 133 (214)
T ss_dssp TTS-CHHHHHHHHHHHTCC--CHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH--CHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 344 7777777666643 3643323 336788777665 33355568777777887765544 57777777
Q ss_pred HHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHH---hhh-hhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 020108 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258 (331)
Q Consensus 183 ~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e~~~~~i~~l~~eave~E~~~ 258 (331)
...+|.+....|- .+.+. |+ .---+||. -+| .-|+.....+++.+ ....+ +.+++..+++.|..|
T Consensus 134 l~pc~~~Y~~ig~----~l~~~---~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~-~~~~f~~a~~~E~~F 202 (214)
T 2qzc_A 134 WTPCMFGYSIVGD----YVIDS---PN-EVYKTWASFYASTEYKKRIEAILYALDEV--SITED-LLNIFINSVRFEIGF 202 (214)
T ss_dssp HHHHHHHHHHHHH----HHTTC---SC-HHHHHHHHHHHSHHHHHHHHHHHHHHTTS--CCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHhC---CC-ChHHHHHHHhCCHHHHHHHHHHHHHHHhC--ccHHH-HHHHHHHHHHHHHHH
Confidence 7777777654441 22222 54 22235554 244 46777777766655 23446 999999999999999
Q ss_pred HHhhcC
Q 020108 259 VCEALP 264 (331)
Q Consensus 259 ~~~~~~ 264 (331)
-+..+.
T Consensus 203 wd~a~~ 208 (214)
T 2qzc_A 203 WDASLR 208 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987763
No 64
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=29.35 E-value=1.3e+02 Score=23.75 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhchH---------HHHHHHHHHHHHHHHHHH
Q 020108 189 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHW---------QKVHHMVHEAVEIETQFV 259 (331)
Q Consensus 189 i~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~---------~~i~~l~~eave~E~~~~ 259 (331)
...+.-+...-+..+..-+++++..++-+..+|..|..-....++.+-..|.- ..+.++++.+++.|...+
T Consensus 21 ~~a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~ 100 (161)
T 3uoi_A 21 LTAINQYFLHSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVL 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred Hhh
Q 020108 260 CEA 262 (331)
Q Consensus 260 ~~~ 262 (331)
...
T Consensus 101 ~~~ 103 (161)
T 3uoi_A 101 NRL 103 (161)
T ss_dssp HHH
T ss_pred HHH
No 65
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=29.02 E-value=2.1e+02 Score=22.38 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhch-HHHHHHHH
Q 020108 105 FLNDIQIPEARAFYGFQIAMENIHSEMYSLLLET--YIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSS-DSFAERLV 181 (331)
Q Consensus 105 l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~--~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~-~~~~~~lv 181 (331)
....-.-+.+..++..|+..|..|++.+-..+.. ++ .|.. ..| +.+. +.+ +.
T Consensus 33 ~a~~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg-~p~~---------~~p------------~~~~~e~L-~~-- 87 (144)
T 1j30_A 33 RADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT-DPAT---------DKP------------IGTLEQMI-ES-- 87 (144)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCB-CTTT---------SCB------------CSSHHHHH-HH--
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCc---------CCC------------CccHHHHH-HH--
Confidence 3334455888999999999999999988777765 53 3310 011 0110 111 00
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 182 GFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 182 ~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
-.-.|.--....+.-+...++...-+.+...+++|..||..|......++..+.
T Consensus 88 -al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 88 -AIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111122233334455566788999999999999999998887776654
No 66
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.86 E-value=2.5e+02 Score=23.34 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=61.4
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhc-hHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS-SDSFAERLVG 182 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~-~~~~~~~lv~ 182 (331)
..+..-.-+.+..++-.|+..|..|+.-+-.++. ++.+. ... ..|. ..+.+ .+++-.+
T Consensus 32 ~~a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~-----i~~--~~p~---------~~~~s~~e~l~~a--- 90 (191)
T 1lko_A 32 GQAKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLE-----IVA--AFPA---------GIIADTHANLIAS--- 90 (191)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCC-----CCC--CCCC---------CCCCCHHHHHHHH---
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcc-----ccC--cCCc---------cccCCHHHHHHHH---
Confidence 3444555688999999999999999987766663 32211 000 0000 00000 0011000
Q ss_pred HHHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 183 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 183 ~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
.--|.--....+.-+.-.++.-....++..++++..+|..|......++..+..
T Consensus 91 -l~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~ 144 (191)
T 1lko_A 91 -AAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE 144 (191)
T ss_dssp -HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 001111111122222333444445788999999999999999988888877764
No 67
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=28.01 E-value=2e+02 Score=22.53 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=41.6
Q ss_pred HcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 203 ~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
+..-+++++..+.-+..+|..|..-....+..+-..|. ...+.+++..+++.|...+.
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (161)
T 3gvy_A 33 EDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDART 99 (161)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44458999999999999999999977776666543321 12366777777777776554
No 68
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=27.75 E-value=1.2e+02 Score=27.45 Aligned_cols=61 Identities=10% Similarity=-0.084 Sum_probs=40.9
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
.+..+++++ ++++++.--.+-..+ ...=.-|..........-.|++|....+.++.++...
T Consensus 63 ~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~ 124 (296)
T 3mjo_A 63 LATMRVFTGLTLLDTIQGTVGAISL---LPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST 124 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666665 567776543322212 2222236677778888999999999999999998754
No 69
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=26.85 E-value=20 Score=25.13 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=14.8
Q ss_pred ccccccccccchhhcCCC
Q 020108 313 FLLSGCIRVPEEVQCGKS 330 (331)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~ 330 (331)
|--|||.|.|.|-+=+|+
T Consensus 14 FDhRGC~r~~kEYtG~Ka 31 (67)
T 1xg0_B 14 FDHRGCSRAPKEYTGAKA 31 (67)
T ss_dssp EECTTCSSCCCSCCSCCC
T ss_pred ecccccCCccccccCCCC
Confidence 678999999998876664
No 70
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=26.74 E-value=2.7e+02 Score=23.51 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred HHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch--------HHHHHHHHHHHHHHH-HHHH
Q 020108 201 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH--------WQKVHHMVHEAVEIE-TQFV 259 (331)
Q Consensus 201 l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--------~~~i~~l~~eave~E-~~~~ 259 (331)
.++.-=+++++..++.++.+|..|......++..+-..+. ...+.+.++.+++.| .++.
T Consensus 53 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i~~~p~~~~gst~enL~~a~~gE~~E~t 120 (202)
T 1yuz_A 53 AAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETS 120 (202)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCccCCCCHHHHHHHHHHhHHHHHH
Confidence 3454457999999999999999999877777765422211 124567777777777 5554
No 71
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=26.44 E-value=2.4e+02 Score=22.28 Aligned_cols=110 Identities=11% Similarity=-0.089 Sum_probs=63.9
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 107 NDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 107 ~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
....-+....++..|+.+|-.|++-+...+..+++.|.- ..+. .|. ...+.....+..+.. =-
T Consensus 33 ~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~-----~~~~-~~~----------~~~~~~e~l~~~l~~-E~ 95 (159)
T 4am5_A 33 EDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNL-----QTLD-PLR----------IGQTVKEVLESDLAA-ER 95 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-----SBCC-CCC----------CCSSHHHHHHHHHHH-HH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-----cccc-ccc----------cchhHHHHHHHHHHH-HH
Confidence 344556788899999999999999888888888776531 0000 000 001111111110000 00
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
+.+ ..+.-+..+++...-+.++..+++|..||.-|.......+..+.
T Consensus 96 ~~~---~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~i~ 142 (159)
T 4am5_A 96 EAR---ALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS 142 (159)
T ss_dssp HHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12222233455556789999999999999999987776665554
No 72
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=25.73 E-value=1.2e+02 Score=27.47 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
.+..+++++ +.++++.--.+-..+. ..=--|-.........-+|++|....+.++.++..
T Consensus 85 ~~~~~~l~~~~~~D~iv~~~l~~~l~---~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~ 145 (311)
T 2o1z_A 85 HFIKHVLAFFAASDGIVLENLASKFL---RQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145 (311)
T ss_dssp HHHHHHHHHHHHC-------CHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH---HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355666665 5677775433211221 11112555666777889999999999999998873
No 73
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=24.90 E-value=1.5e+02 Score=27.18 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 197 AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 197 ~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
..|++...+ ......|+-|.++|-+|....+++++.+-.
T Consensus 32 a~ySi~~~n--~~~~~~i~~V~~eEMlHl~l~aNll~AiGg 70 (317)
T 3hl1_A 32 VLYSIKDPT--TVPYRLIQAAVYQEMLHAQLVSNIANAYGY 70 (317)
T ss_dssp HHHHBSCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344454433 578899999999999999999999987753
No 74
>1xg0_A Phycoerythrin alpha-3 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_A* 1xf6_A*
Probab=24.27 E-value=24 Score=25.39 Aligned_cols=18 Identities=44% Similarity=0.783 Sum_probs=15.0
Q ss_pred ccccccccccchhhcCCC
Q 020108 313 FLLSGCIRVPEEVQCGKS 330 (331)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~ 330 (331)
|--|||.|.|.|-+=+|+
T Consensus 14 FDhRGC~r~~kEYtG~Ka 31 (76)
T 1xg0_A 14 FDHRGCSRAPKESTGGKA 31 (76)
T ss_dssp EECTTCSSCCCCCCSCCC
T ss_pred ecccccCCccccccCCCC
Confidence 678999999999876664
No 75
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=24.08 E-value=1.4e+02 Score=26.79 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK 237 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~ 237 (331)
.+..+++++ +.++++.--.. .-.+...=..|-.........-.|++|....+.++.++..
T Consensus 61 ~~~~~~l~~~~~~D~iv~~~l---~~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~ 121 (286)
T 3olj_A 61 YFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK 121 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356666665 56777753221 1112211123555566777788999999999999999864
No 76
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=23.38 E-value=1.6e+02 Score=23.70 Aligned_cols=56 Identities=18% Similarity=-0.000 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 205 g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
.-+|+++..++.+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 40 ~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~al~~E~~~~~ 104 (179)
T 1nfv_A 40 MDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIE 104 (179)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999977777665532221 12366777777777775554
No 77
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=23.36 E-value=1.9e+02 Score=22.40 Aligned_cols=57 Identities=18% Similarity=-0.021 Sum_probs=40.5
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 204 ~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
..-++++...++.+..+|..|..-....++.+-..|. ...+.++++.+++.|...+.
T Consensus 34 ~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (158)
T 2y3q_A 34 NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAK 99 (158)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3446899999999999999999977777666532221 12456777777777776554
No 78
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=23.15 E-value=82 Score=23.48 Aligned_cols=33 Identities=6% Similarity=0.011 Sum_probs=26.8
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCccccCCc
Q 020108 266 ALIGMNSSLMSQYIKFVADRLLVHIHQCSLFIIACVKG 303 (331)
Q Consensus 266 ~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~p 303 (331)
...+++++.+++.+.+ +|.-+.++| |.+.+.+|
T Consensus 38 k~~~~~Ad~V~~~v~~-an~~~~~~~----ykIVDKkp 70 (93)
T 3r15_A 38 KTRHIPAGAVIDMLAE-INTEALALD----YQIVDKKP 70 (93)
T ss_dssp TTCCBCHHHHHHHHHH-HHHHHHTTT----EEEEESST
T ss_pred hcCCCcHHHHHHHHHH-HHHHHHHcC----ceeecCCC
Confidence 5668999999999998 999999999 55555554
No 79
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=23.15 E-value=2.6e+02 Score=21.56 Aligned_cols=109 Identities=10% Similarity=-0.094 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHhH
Q 020108 108 DIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVE 187 (331)
Q Consensus 108 ~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~lE 187 (331)
...-+....++-.++.+|..|.+.+...+..+++.|.-.. +...+. -.+....++.. .-.|
T Consensus 34 ~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~-----~~~~~~-----------~~~~~e~l~~~---l~~E 94 (158)
T 2y3q_A 34 NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQD-----LGKLNI-----------GEDVEEMLRSD---LALE 94 (158)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSC-----CCCCCC-----------CSSHHHHHHHH---HHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-----CCcCCC-----------CCCHHHHHHHH---HHHH
Confidence 3444788889999999999999999999988876553210 111000 00111111111 1111
Q ss_pred HHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 020108 188 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 236 (331)
Q Consensus 188 gi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~ 236 (331)
.- ....+.-+...+....=+.++..++++..||.-|.......+..+.
T Consensus 95 ~~-~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~ 142 (158)
T 2y3q_A 95 LD-GAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222223343334588999999999999999998887776554
No 80
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=22.48 E-value=1.6e+02 Score=23.47 Aligned_cols=56 Identities=16% Similarity=-0.024 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 205 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 205 g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
--++|++..+.-.+.+|..|..-....+..+-..|. ...+.+++..+.+.|...+.
T Consensus 35 ~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (159)
T 4am5_A 35 WGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRIGQTVKEVLESDLAAEREARA 99 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999865554444432221 13356677777777766654
No 81
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=21.93 E-value=1.2e+02 Score=27.63 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=40.8
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
.+..+++++ ++++++.--.+-..+ ...=.-|..........-.|++|....+.++.++...
T Consensus 54 ~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~ 115 (319)
T 3n37_A 54 QLTMRVFTGLTLLDTLQNVIGAPSL---MPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQT 115 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 355666665 567776543322222 2222236677778888999999999999999988753
No 82
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=21.50 E-value=1.2e+02 Score=27.71 Aligned_cols=61 Identities=10% Similarity=-0.084 Sum_probs=40.5
Q ss_pred HHHHHHHHH-HHhHHHHHHhHHHHHHHHHHcCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 020108 175 SFAERLVGF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKR 238 (331)
Q Consensus 175 ~~~~~lv~~-~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e 238 (331)
.+..+++++ ++++++.--.+-..+ ...=.-|..........-.|++|....+.++.++...
T Consensus 64 ~~~~~~l~~~~~~D~iq~~~~~~~~---~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~ 125 (329)
T 3dhz_A 64 LATMRVFTGLTLLDTIQGTVGAISL---LPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST 125 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHT---GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355666665 567776543222211 2222236677778888999999999999999998753
No 83
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=21.20 E-value=2e+02 Score=23.56 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=40.2
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhc--------hH--HHHHHHHHHHHHHHHHHHH
Q 020108 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRL--------HW--QKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 204 ~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~--------~~--~~i~~l~~eave~E~~~~~ 260 (331)
.--+||++..+...+.+|.-|..-....+..+-..+ .. ..+.++++.+.+.|...+.
T Consensus 47 ~~gl~~~a~~f~~~a~EE~~HA~~l~e~i~~lGG~p~l~~i~~p~~~~~~~~e~le~aL~~E~~~~~ 113 (181)
T 3bvf_A 47 THSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISE 113 (181)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999986666555443222 11 2467778888888876554
No 84
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=20.92 E-value=3.7e+02 Score=22.54 Aligned_cols=139 Identities=13% Similarity=-0.084 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhhchHHHHHHHHHHHHh
Q 020108 111 IPEARAFYGFQIAM----ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACV 186 (331)
Q Consensus 111 ~~E~~~~l~~Q~~~----E~iH~esYs~il~~~~~d~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 186 (331)
+++....+..++.. |. ..+..+++.++.++++ .......|.-+.-.+++.....+. ++...++++..+
T Consensus 65 ~~~~~~~l~~~~~~~i~~E~---~lh~~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~laAl~pc 136 (226)
T 1udd_A 65 EYPLMAELIELARDEVTVEV---ENYVKLLKELDLTLED----AIKTEPTLVNSAYMDFMLATAYKG-NIIEGLTALLPC 136 (226)
T ss_dssp CTTHHHHHHHHHHHHTTHHH---HHHHHHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCHHH----HhhCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 56665555555433 64 2333446888777665 333455677777777777654432 466777777777
Q ss_pred HHHHHHhHHHHHHHHHHcCCCCChHHHHHHHH---hhh-hhHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHh
Q 020108 187 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRKR-LHWQKVHHMVHEAVEIETQFVCE 261 (331)
Q Consensus 187 Egi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~---RDE-~~H~~f~~~l~~~l~~e-~~~~~i~~l~~eave~E~~~~~~ 261 (331)
|.+....|-...-.. .+ .|+ .---+||. -+| .-|+.....+++.+ . ...+++.+++..+++.|..|-+.
T Consensus 137 ~~~Y~~ig~~l~~~~--~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~~f~~a~~lE~~Fwd~ 210 (226)
T 1udd_A 137 FWSYAEIAEYHKDKL--RD-NPI-KIYREWGKVYLSNEYLNLVGRLRKIIDSS--GHSGYDRLRRIFITGSKFELAFWEM 210 (226)
T ss_dssp HHHHHHHHHHTHHHH--TT-CSC-HHHHHHHHGGGSHHHHHHHHHHHHHHHTS--CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CC-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655443221111 12 244 22245654 233 45677666666655 2 34568999999999999999987
Q ss_pred hc
Q 020108 262 AL 263 (331)
Q Consensus 262 ~~ 263 (331)
.+
T Consensus 211 a~ 212 (226)
T 1udd_A 211 AW 212 (226)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 85
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1
Probab=20.44 E-value=3.2e+02 Score=21.54 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=30.3
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020108 104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLET 138 (331)
Q Consensus 104 ~l~~~i~~~E~~~~l~~Q~~~E~iH~esYs~il~~ 138 (331)
.++..+++|+++..+...+.+|..|......+++.
T Consensus 121 ~~a~~~~d~~~k~l~~~la~eE~~H~~~l~~~~~~ 155 (157)
T 1vjx_A 121 ELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE 155 (157)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778899999999999999999999988777764
No 86
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=20.01 E-value=3.6e+02 Score=21.95 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcCChHH
Q 020108 124 MENIHSEMYSLLLETYIKDSKE 145 (331)
Q Consensus 124 ~E~iH~esYs~il~~~~~d~~e 145 (331)
.|..|...|+.+.+.+..+++.
T Consensus 70 le~~~~~~f~~m~~~l~~~~~~ 91 (171)
T 2ims_A 70 INRRYDSEFQTMLQHLQPTAEN 91 (171)
T ss_dssp HCHHHHHHHHHHHTTCCSSHHH
T ss_pred HHHHhHHHHHHHHHHcCCCccc
Confidence 5679999999999987555554
No 87
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=20.01 E-value=2.4e+02 Score=22.47 Aligned_cols=57 Identities=18% Similarity=0.009 Sum_probs=38.8
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHH
Q 020108 204 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH---------WQKVHHMVHEAVEIETQFVC 260 (331)
Q Consensus 204 ~g~l~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~---------~~~i~~l~~eave~E~~~~~ 260 (331)
..-+|+++..++.+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 36 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~~~~~~~e~l~~al~~E~~~~~ 101 (174)
T 3qb9_A 36 NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (174)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3346899999999999999999977777665532221 12355666667777665443
Done!