Query 020109
Match_columns 331
No_of_seqs 176 out of 1243
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.6 2E-14 4.3E-19 123.7 13.5 113 176-290 27-139 (144)
2 COG3063 PilF Tfp pilus assembl 99.6 5.2E-14 1.1E-18 131.0 13.3 136 176-316 38-175 (250)
3 TIGR00990 3a0801s09 mitochondr 99.5 4.8E-13 1E-17 138.7 16.6 126 174-301 332-457 (615)
4 TIGR00990 3a0801s09 mitochondr 99.5 6.9E-13 1.5E-17 137.5 16.9 127 173-301 365-491 (615)
5 PRK10370 formate-dependent nit 99.5 9E-13 1.9E-17 119.6 15.0 115 186-301 52-168 (198)
6 PRK15359 type III secretion sy 99.5 5.2E-13 1.1E-17 114.9 12.2 107 190-301 10-116 (144)
7 TIGR02521 type_IV_pilW type IV 99.5 2.8E-12 6E-17 110.7 16.4 127 173-301 31-159 (234)
8 COG3063 PilF Tfp pilus assembl 99.5 5.9E-13 1.3E-17 124.0 12.5 125 174-301 70-197 (250)
9 KOG4626 O-linked N-acetylgluco 99.4 3.9E-13 8.5E-18 138.6 11.0 128 172-301 285-412 (966)
10 TIGR02552 LcrH_SycD type III s 99.4 1.7E-12 3.7E-17 107.4 12.8 101 176-278 20-120 (135)
11 TIGR02521 type_IV_pilW type IV 99.4 5.3E-12 1.1E-16 108.9 16.3 128 173-302 65-194 (234)
12 KOG4626 O-linked N-acetylgluco 99.4 6E-13 1.3E-17 137.2 12.0 127 173-301 354-480 (966)
13 PRK12370 invasion protein regu 99.4 1.7E-12 3.7E-17 133.7 15.4 128 172-301 294-430 (553)
14 PRK11189 lipoprotein NlpI; Pro 99.4 3.6E-12 7.9E-17 121.5 16.4 125 174-301 65-189 (296)
15 PRK12370 invasion protein regu 99.4 2.9E-12 6.2E-17 132.0 16.1 129 171-301 336-465 (553)
16 TIGR02552 LcrH_SycD type III s 99.4 4.3E-12 9.2E-17 105.1 14.1 108 194-303 4-111 (135)
17 PLN03088 SGT1, suppressor of 99.4 5.7E-12 1.2E-16 123.7 15.9 114 177-292 6-119 (356)
18 PRK10370 formate-dependent nit 99.4 4.2E-12 9.1E-17 115.2 13.6 107 172-279 72-180 (198)
19 KOG0553 TPR repeat-containing 99.4 3.3E-12 7.2E-17 122.5 12.3 115 178-294 86-200 (304)
20 TIGR02917 PEP_TPR_lipo putativ 99.4 7.6E-12 1.6E-16 128.3 15.7 126 173-301 770-895 (899)
21 PF13429 TPR_15: Tetratricopep 99.4 1.6E-12 3.4E-17 121.5 9.7 128 172-301 145-272 (280)
22 PRK15179 Vi polysaccharide bio 99.4 1.1E-11 2.3E-16 131.7 16.0 128 172-301 85-212 (694)
23 PRK15174 Vi polysaccharide exp 99.4 6.4E-12 1.4E-16 132.3 14.2 127 173-301 246-376 (656)
24 KOG1126 DNA-binding cell divis 99.4 1.4E-12 3E-17 134.9 8.5 126 176-303 458-583 (638)
25 PRK15174 Vi polysaccharide exp 99.4 1.7E-11 3.7E-16 129.1 16.6 123 177-301 216-342 (656)
26 KOG1126 DNA-binding cell divis 99.3 1.1E-12 2.3E-17 135.8 6.3 121 179-301 427-547 (638)
27 PRK09782 bacteriophage N4 rece 99.3 2.8E-11 6.2E-16 132.8 17.0 120 179-301 582-701 (987)
28 PRK09782 bacteriophage N4 rece 99.3 2.2E-11 4.8E-16 133.6 14.9 127 173-301 609-735 (987)
29 cd00189 TPR Tetratricopeptide 99.3 5.2E-11 1.1E-15 86.6 10.6 98 176-275 3-100 (100)
30 TIGR02917 PEP_TPR_lipo putativ 99.3 1.1E-10 2.5E-15 119.7 16.5 125 174-301 737-861 (899)
31 TIGR03302 OM_YfiO outer membra 99.3 6.4E-11 1.4E-15 107.2 13.0 130 171-302 31-191 (235)
32 KOG1155 Anaphase-promoting com 99.3 4.9E-11 1.1E-15 120.0 12.9 119 180-300 337-455 (559)
33 PRK15363 pathogenicity island 99.3 1.2E-10 2.5E-15 103.2 13.7 97 175-273 37-133 (157)
34 PRK11447 cellulose synthase su 99.3 1.3E-10 2.9E-15 129.1 17.2 123 178-302 356-520 (1157)
35 PRK11788 tetratricopeptide rep 99.2 1.9E-10 4.2E-15 110.6 15.4 125 176-302 110-239 (389)
36 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-10 3.6E-15 110.2 14.8 113 187-301 40-156 (296)
37 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.6E-10 5.6E-15 91.0 13.5 104 176-281 5-114 (119)
38 PRK11447 cellulose synthase su 99.2 1.8E-10 4E-15 128.0 16.8 129 172-301 384-553 (1157)
39 PRK10049 pgaA outer membrane p 99.2 3.1E-10 6.8E-15 121.3 17.1 125 174-301 50-174 (765)
40 PRK11788 tetratricopeptide rep 99.2 4.1E-10 8.9E-15 108.3 16.0 125 175-302 182-307 (389)
41 TIGR03302 OM_YfiO outer membra 99.2 2.8E-10 6E-15 103.1 14.0 126 175-301 72-227 (235)
42 PF13429 TPR_15: Tetratricopep 99.2 1.1E-10 2.4E-15 109.1 10.5 129 171-301 108-238 (280)
43 KOG1155 Anaphase-promoting com 99.1 5.9E-10 1.3E-14 112.3 14.0 123 174-298 365-487 (559)
44 PRK02603 photosystem I assembl 99.1 1.5E-09 3.2E-14 95.2 14.1 116 172-292 34-166 (172)
45 PF13414 TPR_11: TPR repeat; P 99.1 3.6E-10 7.9E-15 84.0 8.5 68 205-274 1-69 (69)
46 PRK15363 pathogenicity island 99.1 9.6E-10 2.1E-14 97.4 11.9 100 200-301 27-127 (157)
47 COG5010 TadD Flp pilus assembl 99.1 2.2E-09 4.8E-14 101.4 14.5 124 175-300 102-225 (257)
48 KOG0547 Translocase of outer m 99.1 6.1E-10 1.3E-14 112.9 10.8 131 171-301 392-561 (606)
49 CHL00033 ycf3 photosystem I as 99.0 5.5E-09 1.2E-13 91.0 14.4 103 173-277 35-154 (168)
50 TIGR00540 hemY_coli hemY prote 99.0 2.7E-09 5.8E-14 106.0 13.2 126 172-302 262-395 (409)
51 PRK10049 pgaA outer membrane p 99.0 3.3E-09 7.1E-14 113.5 14.8 126 176-303 313-453 (765)
52 KOG0547 Translocase of outer m 99.0 1.7E-09 3.6E-14 109.7 11.5 121 179-301 366-486 (606)
53 PLN02789 farnesyltranstransfer 99.0 7.5E-09 1.6E-13 100.9 15.3 118 182-301 46-166 (320)
54 COG4783 Putative Zn-dependent 99.0 6.9E-09 1.5E-13 105.0 15.0 125 175-301 308-432 (484)
55 cd00189 TPR Tetratricopeptide 99.0 6.5E-09 1.4E-13 75.4 10.6 91 209-301 2-92 (100)
56 KOG0548 Molecular co-chaperone 99.0 3.9E-09 8.5E-14 107.6 12.6 111 178-290 363-473 (539)
57 COG5010 TadD Flp pilus assembl 99.0 6.9E-09 1.5E-13 98.1 13.2 123 177-301 70-192 (257)
58 KOG2076 RNA polymerase III tra 99.0 9.1E-09 2E-13 109.8 15.4 124 176-301 142-265 (895)
59 PF12895 Apc3: Anaphase-promot 99.0 1.4E-09 3.1E-14 84.5 7.0 81 186-269 2-84 (84)
60 PF13432 TPR_16: Tetratricopep 99.0 1.4E-09 3.1E-14 80.2 6.5 56 220-276 9-64 (65)
61 PF13432 TPR_16: Tetratricopep 99.0 2.3E-09 4.9E-14 79.0 7.5 64 178-242 2-65 (65)
62 PF13414 TPR_11: TPR repeat; P 98.9 1.6E-09 3.4E-14 80.6 6.0 67 172-239 2-69 (69)
63 KOG1125 TPR repeat-containing 98.9 2.1E-09 4.5E-14 110.4 8.9 108 189-298 410-519 (579)
64 COG4235 Cytochrome c biogenesi 98.9 1.5E-08 3.3E-13 97.4 14.0 114 188-302 137-252 (287)
65 PRK14574 hmsH outer membrane p 98.9 1.5E-08 3.3E-13 109.7 15.0 125 175-301 36-160 (822)
66 PLN02789 farnesyltranstransfer 98.9 3.1E-08 6.7E-13 96.6 15.3 113 176-290 74-189 (320)
67 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 4.4E-08 9.5E-13 98.3 16.4 125 172-301 168-292 (395)
68 PRK15179 Vi polysaccharide bio 98.9 1.4E-08 2.9E-13 108.3 13.5 109 171-281 118-226 (694)
69 COG4235 Cytochrome c biogenesi 98.9 2.5E-08 5.4E-13 95.9 13.7 112 171-283 154-267 (287)
70 PLN03088 SGT1, suppressor of 98.9 1.7E-08 3.6E-13 99.4 12.9 89 211-301 6-94 (356)
71 cd05804 StaR_like StaR_like; a 98.9 2.2E-08 4.9E-13 95.3 13.2 126 176-303 46-212 (355)
72 PRK10803 tol-pal system protei 98.9 4.5E-08 9.8E-13 93.1 15.2 108 172-281 141-255 (263)
73 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.9E-08 8.5E-13 78.3 12.6 93 207-301 2-100 (119)
74 KOG1125 TPR repeat-containing 98.9 6.9E-09 1.5E-13 106.6 10.1 123 174-298 431-563 (579)
75 CHL00033 ycf3 photosystem I as 98.9 3E-08 6.4E-13 86.4 12.3 114 186-301 12-137 (168)
76 PRK11906 transcriptional regul 98.9 3.1E-08 6.7E-13 100.4 13.8 113 188-301 273-396 (458)
77 PRK10153 DNA-binding transcrip 98.9 5.1E-08 1.1E-12 100.8 15.4 124 176-301 342-477 (517)
78 KOG0543 FKBP-type peptidyl-pro 98.8 3.6E-08 7.8E-13 98.1 13.1 117 179-297 214-345 (397)
79 PF12895 Apc3: Anaphase-promot 98.8 6E-09 1.3E-13 81.0 6.1 79 221-301 2-82 (84)
80 PRK10747 putative protoheme IX 98.8 8.4E-08 1.8E-12 95.2 15.4 126 172-303 262-387 (398)
81 cd05804 StaR_like StaR_like; a 98.8 4.8E-08 1E-12 93.1 12.6 99 174-274 115-217 (355)
82 PF14559 TPR_19: Tetratricopep 98.8 1.3E-08 2.8E-13 75.3 6.7 63 186-249 4-66 (68)
83 PRK14574 hmsH outer membrane p 98.8 1.1E-07 2.4E-12 103.1 15.6 124 175-301 104-227 (822)
84 PRK15331 chaperone protein Sic 98.8 7E-08 1.5E-12 86.1 11.7 110 176-288 40-149 (165)
85 PRK02603 photosystem I assembl 98.8 8.1E-08 1.7E-12 84.2 11.3 98 196-295 22-124 (172)
86 KOG2003 TPR repeat-containing 98.8 2.4E-08 5.3E-13 100.9 8.9 125 171-297 488-612 (840)
87 PF09976 TPR_21: Tetratricopep 98.8 3.8E-07 8.3E-12 77.9 15.0 114 185-301 23-142 (145)
88 PF14559 TPR_19: Tetratricopep 98.7 3E-08 6.5E-13 73.2 6.8 65 220-285 3-67 (68)
89 PF13371 TPR_9: Tetratricopept 98.7 7E-08 1.5E-12 72.2 8.9 66 181-247 3-68 (73)
90 TIGR00540 hemY_coli hemY prote 98.7 3.1E-07 6.6E-12 91.3 15.9 123 177-301 88-211 (409)
91 KOG4162 Predicted calmodulin-b 98.7 1.7E-07 3.6E-12 99.2 14.2 135 179-315 656-792 (799)
92 KOG1173 Anaphase-promoting com 98.7 7.9E-08 1.7E-12 98.9 11.0 118 179-298 386-510 (611)
93 KOG2002 TPR-containing nuclear 98.7 9.3E-08 2E-12 103.0 11.8 113 176-290 310-427 (1018)
94 KOG2003 TPR repeat-containing 98.7 7.6E-08 1.7E-12 97.4 10.5 135 175-317 526-694 (840)
95 PRK10747 putative protoheme IX 98.7 5.2E-07 1.1E-11 89.6 15.7 127 173-301 117-287 (398)
96 PF13371 TPR_9: Tetratricopept 98.7 1.9E-07 4.1E-12 69.9 8.9 66 219-285 6-71 (73)
97 PRK14720 transcript cleavage f 98.6 2.4E-07 5.2E-12 100.8 12.4 117 171-290 114-270 (906)
98 KOG3060 Uncharacterized conser 98.6 5.2E-07 1.1E-11 85.7 13.1 115 175-292 88-203 (289)
99 KOG1840 Kinesin light chain [C 98.6 2.7E-07 5.9E-12 95.2 11.9 125 176-302 244-392 (508)
100 PRK10803 tol-pal system protei 98.6 7.5E-07 1.6E-11 84.8 12.5 95 206-301 141-241 (263)
101 KOG0553 TPR repeat-containing 98.5 5.2E-07 1.1E-11 87.1 10.7 81 220-301 93-173 (304)
102 COG4783 Putative Zn-dependent 98.5 1.4E-06 3E-11 88.6 14.1 101 199-301 298-398 (484)
103 KOG4648 Uncharacterized conser 98.5 2.8E-07 6.1E-12 90.9 8.6 105 181-287 105-209 (536)
104 KOG1840 Kinesin light chain [C 98.5 1.1E-06 2.3E-11 90.9 13.2 126 173-300 325-473 (508)
105 KOG1128 Uncharacterized conser 98.5 1.6E-07 3.5E-12 98.8 7.2 119 181-301 493-611 (777)
106 PF06552 TOM20_plant: Plant sp 98.5 1.2E-06 2.6E-11 79.5 11.4 97 189-286 7-123 (186)
107 PRK11906 transcriptional regul 98.5 1.4E-06 3E-11 88.6 13.1 110 187-298 318-428 (458)
108 KOG2076 RNA polymerase III tra 98.5 1.7E-06 3.7E-11 92.8 14.1 129 171-301 171-304 (895)
109 PRK10866 outer membrane biogen 98.5 3.6E-06 7.8E-11 78.9 14.7 126 174-301 33-199 (243)
110 PRK15331 chaperone protein Sic 98.5 6.5E-07 1.4E-11 80.0 9.1 97 203-301 33-129 (165)
111 PRK14720 transcript cleavage f 98.5 1.2E-06 2.5E-11 95.6 12.7 127 169-300 27-172 (906)
112 PF09976 TPR_21: Tetratricopep 98.5 1.4E-06 3.1E-11 74.4 10.5 93 175-270 50-145 (145)
113 PF12688 TPR_5: Tetratrico pep 98.5 3.1E-06 6.7E-11 71.8 12.3 96 175-272 3-104 (120)
114 PF12569 NARP1: NMDA receptor- 98.5 4.9E-06 1.1E-10 86.3 16.2 79 222-301 208-286 (517)
115 KOG1129 TPR repeat-containing 98.4 2.5E-07 5.4E-12 90.8 5.5 123 174-298 291-416 (478)
116 KOG2002 TPR-containing nuclear 98.4 1.7E-06 3.6E-11 93.6 12.1 119 171-291 268-390 (1018)
117 PF12688 TPR_5: Tetratrico pep 98.4 7.6E-06 1.6E-10 69.5 13.7 92 207-300 1-98 (120)
118 KOG0543 FKBP-type peptidyl-pro 98.4 1.9E-06 4.1E-11 86.0 11.0 98 176-274 260-357 (397)
119 KOG0548 Molecular co-chaperone 98.4 1.8E-06 3.9E-11 88.5 10.9 104 182-287 11-114 (539)
120 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.5E-06 3.3E-11 88.1 10.2 68 203-272 71-141 (453)
121 KOG1174 Anaphase-promoting com 98.4 2E-06 4.3E-11 86.5 10.4 129 171-300 230-391 (564)
122 PF05843 Suf: Suppressor of fo 98.4 2.4E-06 5.3E-11 81.4 10.2 122 178-300 6-130 (280)
123 PF13525 YfiO: Outer membrane 98.4 2.9E-06 6.3E-11 76.9 10.3 126 175-301 7-165 (203)
124 KOG0550 Molecular chaperone (D 98.4 7.9E-07 1.7E-11 89.1 7.1 133 171-305 201-349 (486)
125 KOG4234 TPR repeat-containing 98.3 6.3E-06 1.4E-10 76.5 12.0 113 182-296 104-221 (271)
126 KOG1129 TPR repeat-containing 98.3 1.6E-06 3.5E-11 85.2 8.5 119 177-297 260-378 (478)
127 KOG3060 Uncharacterized conser 98.3 1.3E-05 2.7E-10 76.4 13.8 118 184-303 63-180 (289)
128 COG1729 Uncharacterized protei 98.3 1.3E-05 2.8E-10 76.5 14.0 105 176-282 144-254 (262)
129 COG2956 Predicted N-acetylgluc 98.3 7.6E-06 1.6E-10 80.2 12.6 125 175-301 143-273 (389)
130 KOG0624 dsRNA-activated protei 98.3 4.5E-06 9.8E-11 82.5 11.1 125 176-301 41-213 (504)
131 KOG0495 HAT repeat protein [RN 98.3 9.4E-06 2E-10 85.3 14.0 125 175-301 721-875 (913)
132 KOG1127 TPR repeat-containing 98.3 2.3E-06 5E-11 92.8 9.4 125 176-301 495-654 (1238)
133 KOG0550 Molecular chaperone (D 98.3 2.6E-06 5.6E-11 85.5 9.1 122 179-302 175-312 (486)
134 PF12569 NARP1: NMDA receptor- 98.3 1.3E-05 2.8E-10 83.1 14.2 124 176-301 197-329 (517)
135 KOG1156 N-terminal acetyltrans 98.3 5.7E-06 1.2E-10 86.6 10.9 123 182-306 50-172 (700)
136 KOG1128 Uncharacterized conser 98.3 2.5E-06 5.4E-11 90.1 8.3 125 175-301 426-577 (777)
137 KOG1173 Anaphase-promoting com 98.2 8.1E-06 1.7E-10 84.4 11.1 122 177-300 316-437 (611)
138 KOG4162 Predicted calmodulin-b 98.2 6.8E-06 1.5E-10 87.3 10.8 97 179-277 690-788 (799)
139 PF04733 Coatomer_E: Coatomer 98.2 5.3E-06 1.2E-10 79.9 9.3 124 172-297 130-255 (290)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.3E-05 2.8E-10 80.7 11.9 98 173-272 200-297 (395)
141 KOG4642 Chaperone-dependent E3 98.2 8.4E-06 1.8E-10 77.1 9.2 114 182-297 19-137 (284)
142 COG3071 HemY Uncharacterized e 98.2 4E-05 8.7E-10 76.5 14.0 126 173-304 263-388 (400)
143 KOG1156 N-terminal acetyltrans 98.1 8.8E-06 1.9E-10 85.2 9.4 113 184-298 18-130 (700)
144 PF13424 TPR_12: Tetratricopep 98.1 3.4E-06 7.4E-11 64.0 4.8 64 207-272 5-75 (78)
145 KOG0495 HAT repeat protein [RN 98.1 2.5E-05 5.5E-10 82.2 12.6 125 172-298 650-774 (913)
146 PRK10153 DNA-binding transcrip 98.1 2E-05 4.4E-10 81.6 11.9 86 189-277 400-487 (517)
147 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.1E-05 2.3E-10 82.1 8.7 64 237-301 70-136 (453)
148 COG2956 Predicted N-acetylgluc 98.1 4.6E-05 9.9E-10 74.9 12.6 117 183-301 190-307 (389)
149 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00022 4.8E-09 57.5 14.8 118 182-301 139-260 (291)
150 COG0457 NrfG FOG: TPR repeat [ 98.1 0.00018 4E-09 58.0 14.0 126 174-301 96-226 (291)
151 KOG1070 rRNA processing protei 98.1 4.5E-05 9.8E-10 85.3 13.2 124 176-301 1533-1658(1710)
152 PF13525 YfiO: Outer membrane 98.0 0.00014 3E-09 66.0 13.8 122 175-297 44-198 (203)
153 PF13424 TPR_12: Tetratricopep 98.0 9.6E-06 2.1E-10 61.6 5.1 61 176-237 8-75 (78)
154 PRK10866 outer membrane biogen 98.0 0.00027 5.9E-09 66.3 15.8 125 176-301 72-236 (243)
155 COG4700 Uncharacterized protei 98.0 0.00013 2.9E-09 67.3 13.1 122 177-301 93-217 (251)
156 PF13512 TPR_18: Tetratricopep 98.0 0.0001 2.2E-09 64.6 11.8 105 175-281 12-137 (142)
157 PF14938 SNAP: Soluble NSF att 98.0 2.3E-05 4.9E-10 74.4 8.1 127 176-305 38-183 (282)
158 PF13428 TPR_14: Tetratricopep 98.0 1.9E-05 4.1E-10 54.7 5.3 41 243-284 2-42 (44)
159 KOG1174 Anaphase-promoting com 97.9 7.6E-05 1.7E-09 75.4 11.2 118 182-301 309-428 (564)
160 KOG0624 dsRNA-activated protei 97.9 0.00021 4.6E-09 71.0 13.6 121 180-301 113-247 (504)
161 KOG0376 Serine-threonine phosp 97.9 1.4E-05 3.1E-10 81.3 5.7 113 178-292 9-121 (476)
162 PLN03081 pentatricopeptide (PP 97.9 9.5E-05 2.1E-09 78.2 11.8 132 172-306 390-557 (697)
163 PF04733 Coatomer_E: Coatomer 97.9 6.4E-05 1.4E-09 72.5 9.3 104 175-280 165-273 (290)
164 PLN03218 maturation of RBCL 1; 97.9 0.00038 8.2E-09 77.9 16.5 121 179-302 585-709 (1060)
165 PLN03077 Protein ECB2; Provisi 97.9 0.00017 3.7E-09 78.0 13.3 124 178-305 594-719 (857)
166 PF04184 ST7: ST7 protein; In 97.8 0.00015 3.3E-09 74.5 11.6 111 187-301 182-319 (539)
167 KOG4555 TPR repeat-containing 97.8 0.00043 9.3E-09 60.8 12.6 93 181-275 51-147 (175)
168 COG4785 NlpI Lipoprotein NlpI, 97.8 9.4E-05 2E-09 69.6 9.0 122 182-306 74-195 (297)
169 PF13428 TPR_14: Tetratricopep 97.8 5.3E-05 1.1E-09 52.5 5.5 42 208-250 2-43 (44)
170 PLN03218 maturation of RBCL 1; 97.8 0.00059 1.3E-08 76.4 16.4 125 177-304 511-641 (1060)
171 PLN03081 pentatricopeptide (PP 97.8 0.00043 9.2E-09 73.3 14.3 125 175-304 261-387 (697)
172 PF13431 TPR_17: Tetratricopep 97.8 2.7E-05 5.8E-10 51.8 3.4 31 196-227 2-32 (34)
173 PF14938 SNAP: Soluble NSF att 97.7 0.0004 8.7E-09 66.0 12.1 123 176-301 78-220 (282)
174 KOG2796 Uncharacterized conser 97.7 0.0002 4.4E-09 69.0 10.0 130 175-306 179-315 (366)
175 PF13431 TPR_17: Tetratricopep 97.6 5.7E-05 1.2E-09 50.2 3.4 32 231-263 2-33 (34)
176 COG1729 Uncharacterized protei 97.6 0.00047 1E-08 66.0 11.0 91 210-302 144-240 (262)
177 PF05843 Suf: Suppressor of fo 97.6 0.0004 8.6E-09 66.3 10.2 93 208-301 2-94 (280)
178 PF13512 TPR_18: Tetratricopep 97.6 0.00061 1.3E-08 59.7 10.5 85 206-292 9-99 (142)
179 PLN03077 Protein ECB2; Provisi 97.6 0.0012 2.6E-08 71.6 15.0 121 176-303 527-651 (857)
180 KOG1127 TPR repeat-containing 97.6 0.00016 3.4E-09 79.1 7.9 109 180-290 569-677 (1238)
181 PF07719 TPR_2: Tetratricopept 97.5 0.00022 4.8E-09 45.6 5.2 32 243-275 2-33 (34)
182 KOG0545 Aryl-hydrocarbon recep 97.5 0.0012 2.5E-08 63.3 12.0 98 183-282 188-303 (329)
183 KOG1915 Cell cycle control pro 97.5 0.0011 2.3E-08 68.3 12.5 122 177-301 369-495 (677)
184 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00033 7.2E-09 69.1 8.3 93 180-274 88-184 (390)
185 COG4105 ComL DNA uptake lipopr 97.5 0.0024 5.3E-08 60.8 13.9 126 172-298 33-188 (254)
186 KOG3785 Uncharacterized conser 97.5 0.00068 1.5E-08 67.7 10.4 119 179-299 63-207 (557)
187 KOG4340 Uncharacterized conser 97.5 0.00023 4.9E-09 69.7 6.8 125 172-298 43-199 (459)
188 PRK04841 transcriptional regul 97.5 0.0022 4.8E-08 69.1 15.0 124 176-301 455-597 (903)
189 KOG4555 TPR repeat-containing 97.4 0.0017 3.7E-08 57.1 10.7 86 214-301 50-139 (175)
190 PF07719 TPR_2: Tetratricopept 97.4 0.0004 8.7E-09 44.4 5.2 34 207-241 1-34 (34)
191 KOG2396 HAT (Half-A-TPR) repea 97.4 0.0025 5.4E-08 65.8 13.1 96 190-286 88-183 (568)
192 PRK04841 transcriptional regul 97.4 0.0032 7E-08 67.8 14.6 125 176-302 494-637 (903)
193 PF00515 TPR_1: Tetratricopept 97.4 0.00034 7.4E-09 45.2 4.5 31 244-275 3-33 (34)
194 KOG4648 Uncharacterized conser 97.4 0.00024 5.3E-09 70.6 5.4 86 214-301 104-189 (536)
195 PF10300 DUF3808: Protein of u 97.4 0.0022 4.8E-08 65.7 12.4 105 187-293 247-356 (468)
196 KOG2610 Uncharacterized conser 97.3 0.0022 4.7E-08 63.8 11.5 114 183-298 113-230 (491)
197 KOG3824 Huntingtin interacting 97.3 0.0004 8.7E-09 68.2 6.2 74 177-251 120-193 (472)
198 PF00515 TPR_1: Tetratricopept 97.3 0.00052 1.1E-08 44.3 4.5 33 208-241 2-34 (34)
199 COG4785 NlpI Lipoprotein NlpI, 97.2 0.0005 1.1E-08 64.8 5.4 83 218-301 75-157 (297)
200 KOG1915 Cell cycle control pro 97.2 0.0042 9E-08 64.1 12.1 121 178-301 78-198 (677)
201 KOG4234 TPR repeat-containing 97.2 0.002 4.3E-08 60.2 8.7 85 220-305 107-196 (271)
202 KOG4642 Chaperone-dependent E3 97.1 0.001 2.2E-08 63.3 6.6 83 220-303 22-104 (284)
203 PF03704 BTAD: Bacterial trans 97.1 0.014 3E-07 49.4 12.6 105 183-301 16-120 (146)
204 COG4700 Uncharacterized protei 97.1 0.012 2.6E-07 54.6 12.9 118 181-301 64-184 (251)
205 PF06552 TOM20_plant: Plant sp 97.0 0.002 4.2E-08 58.8 7.3 68 224-292 7-84 (186)
206 KOG4340 Uncharacterized conser 97.0 0.0025 5.4E-08 62.6 8.1 117 183-301 20-168 (459)
207 KOG3824 Huntingtin interacting 97.0 0.0023 4.9E-08 63.1 7.5 67 220-287 128-194 (472)
208 KOG2376 Signal recognition par 97.0 0.01 2.2E-07 62.4 12.6 115 178-301 84-199 (652)
209 KOG3081 Vesicle coat complex C 96.9 0.012 2.5E-07 56.9 11.6 117 180-299 144-263 (299)
210 KOG2053 Mitochondrial inherita 96.9 0.0078 1.7E-07 65.5 11.4 109 186-297 22-130 (932)
211 COG3071 HemY Uncharacterized e 96.9 0.028 6.2E-07 56.5 14.4 115 184-301 95-211 (400)
212 PF13181 TPR_8: Tetratricopept 96.8 0.0023 4.9E-08 41.1 4.3 30 244-274 3-32 (34)
213 PF02259 FAT: FAT domain; Int 96.7 0.038 8.2E-07 52.5 13.5 116 176-293 149-308 (352)
214 KOG0545 Aryl-hydrocarbon recep 96.7 0.011 2.4E-07 56.7 9.4 88 212-301 183-288 (329)
215 KOG4507 Uncharacterized conser 96.6 0.0066 1.4E-07 63.9 8.3 111 176-288 609-721 (886)
216 KOG3081 Vesicle coat complex C 96.6 0.025 5.3E-07 54.7 11.5 90 188-279 188-278 (299)
217 KOG1070 rRNA processing protei 96.6 0.024 5.3E-07 64.4 12.6 107 175-283 1566-1676(1710)
218 KOG1308 Hsp70-interacting prot 96.5 0.0011 2.3E-08 65.7 1.6 91 183-275 124-214 (377)
219 KOG2376 Signal recognition par 96.5 0.019 4E-07 60.4 10.6 112 184-301 23-134 (652)
220 COG3118 Thioredoxin domain-con 96.5 0.036 7.7E-07 54.1 11.5 114 182-299 143-258 (304)
221 PF13181 TPR_8: Tetratricopept 96.4 0.0064 1.4E-07 38.9 4.3 32 208-240 2-33 (34)
222 KOG2047 mRNA splicing factor [ 96.4 0.052 1.1E-06 57.9 13.0 124 175-301 389-535 (835)
223 KOG1941 Acetylcholine receptor 96.4 0.013 2.7E-07 59.0 8.2 123 177-301 126-270 (518)
224 PF08424 NRDE-2: NRDE-2, neces 96.4 0.098 2.1E-06 51.0 14.4 112 189-301 47-178 (321)
225 COG0790 FOG: TPR repeat, SEL1 96.3 0.08 1.7E-06 49.7 13.0 114 171-291 107-236 (292)
226 PF08424 NRDE-2: NRDE-2, neces 96.3 0.08 1.7E-06 51.6 13.4 96 193-289 5-111 (321)
227 KOG0376 Serine-threonine phosp 96.3 0.0031 6.8E-08 64.6 3.2 81 220-301 16-96 (476)
228 COG5191 Uncharacterized conser 96.3 0.0076 1.7E-07 59.5 5.7 92 193-286 93-185 (435)
229 KOG2796 Uncharacterized conser 96.2 0.032 6.8E-07 54.2 9.7 102 174-277 213-320 (366)
230 KOG2610 Uncharacterized conser 96.2 0.034 7.4E-07 55.6 10.0 117 182-301 146-271 (491)
231 COG4105 ComL DNA uptake lipopr 96.1 0.061 1.3E-06 51.5 10.9 82 207-290 34-121 (254)
232 PF04781 DUF627: Protein of un 96.1 0.04 8.7E-07 46.5 8.7 93 179-272 2-107 (111)
233 KOG1130 Predicted G-alpha GTPa 96.1 0.0076 1.6E-07 61.4 5.0 119 177-297 199-335 (639)
234 PF13281 DUF4071: Domain of un 96.1 0.056 1.2E-06 54.4 11.1 125 175-301 181-329 (374)
235 KOG1585 Protein required for f 96.1 0.082 1.8E-06 50.8 11.5 117 179-298 37-171 (308)
236 PF13174 TPR_6: Tetratricopept 96.1 0.012 2.6E-07 37.0 4.2 31 244-275 2-32 (33)
237 PF13281 DUF4071: Domain of un 96.0 0.084 1.8E-06 53.1 11.9 125 176-301 144-283 (374)
238 KOG3785 Uncharacterized conser 95.9 0.14 3.1E-06 51.6 12.7 129 172-306 90-248 (557)
239 PF14561 TPR_20: Tetratricopep 95.9 0.06 1.3E-06 43.4 8.4 47 193-240 8-54 (90)
240 PF03704 BTAD: Bacterial trans 95.9 0.048 1E-06 46.0 8.3 64 207-272 62-125 (146)
241 KOG0530 Protein farnesyltransf 95.8 0.17 3.8E-06 49.0 12.7 112 185-297 55-167 (318)
242 KOG1586 Protein required for f 95.8 0.085 1.8E-06 50.4 10.3 129 178-307 39-184 (288)
243 KOG2053 Mitochondrial inherita 95.8 0.11 2.3E-06 57.0 12.3 113 180-295 50-163 (932)
244 KOG3617 WD40 and TPR repeat-co 95.8 0.056 1.2E-06 59.1 10.0 95 176-272 861-996 (1416)
245 KOG1130 Predicted G-alpha GTPa 95.8 0.07 1.5E-06 54.6 10.0 120 174-295 236-373 (639)
246 smart00028 TPR Tetratricopepti 95.7 0.017 3.8E-07 33.7 3.7 30 244-274 3-32 (34)
247 KOG2396 HAT (Half-A-TPR) repea 95.7 0.18 4E-06 52.4 13.1 80 173-252 105-184 (568)
248 PF14853 Fis1_TPR_C: Fis1 C-te 95.7 0.057 1.2E-06 39.6 6.9 38 210-248 4-41 (53)
249 KOG1308 Hsp70-interacting prot 95.7 0.004 8.6E-08 61.8 0.9 81 220-301 126-206 (377)
250 PF13176 TPR_7: Tetratricopept 95.6 0.025 5.4E-07 37.5 4.2 25 245-270 2-26 (36)
251 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.061 1.3E-06 39.5 6.6 43 243-286 2-44 (53)
252 PF09613 HrpB1_HrpK: Bacterial 95.6 0.2 4.3E-06 44.9 11.2 114 180-298 17-130 (160)
253 PF04184 ST7: ST7 protein; In 95.5 0.2 4.3E-06 52.1 12.5 104 175-279 261-382 (539)
254 PF09613 HrpB1_HrpK: Bacterial 95.5 1.2 2.5E-05 40.0 15.8 73 220-293 22-94 (160)
255 PRK10941 hypothetical protein; 95.5 0.097 2.1E-06 50.3 9.6 68 218-286 191-258 (269)
256 PF13176 TPR_7: Tetratricopept 95.5 0.015 3.2E-07 38.6 2.9 24 177-200 3-26 (36)
257 KOG2471 TPR repeat-containing 95.4 0.029 6.3E-07 58.2 6.2 115 176-292 243-384 (696)
258 PRK10941 hypothetical protein; 95.4 0.21 4.5E-06 48.1 11.4 71 176-247 184-254 (269)
259 KOG1586 Protein required for f 95.3 0.14 3E-06 49.0 9.9 119 181-301 82-219 (288)
260 PF10300 DUF3808: Protein of u 95.3 0.25 5.4E-06 50.9 12.5 113 187-301 202-329 (468)
261 COG2976 Uncharacterized protei 95.2 0.15 3.2E-06 47.3 9.5 108 191-301 70-183 (207)
262 PF14561 TPR_20: Tetratricopep 95.1 0.19 4.2E-06 40.4 8.9 73 227-300 7-81 (90)
263 KOG1310 WD40 repeat protein [G 95.1 0.068 1.5E-06 56.0 7.6 88 189-277 390-479 (758)
264 KOG2047 mRNA splicing factor [ 95.1 0.25 5.5E-06 52.9 11.9 123 178-301 482-610 (835)
265 KOG1550 Extracellular protein 95.0 0.15 3.2E-06 53.5 10.2 115 171-289 242-372 (552)
266 PF09986 DUF2225: Uncharacteri 95.0 0.26 5.6E-06 45.8 10.6 101 187-289 91-212 (214)
267 COG3914 Spy Predicted O-linked 95.0 0.29 6.4E-06 51.7 12.0 107 179-286 73-185 (620)
268 smart00028 TPR Tetratricopepti 94.8 0.057 1.2E-06 31.4 3.9 31 209-240 3-33 (34)
269 KOG3617 WD40 and TPR repeat-co 94.7 0.27 5.9E-06 54.0 11.0 88 209-298 860-988 (1416)
270 PF08631 SPO22: Meiosis protei 94.6 0.85 1.8E-05 43.4 13.3 119 185-304 5-148 (278)
271 PF13174 TPR_6: Tetratricopept 94.5 0.085 1.8E-06 33.0 4.3 31 209-240 2-32 (33)
272 KOG1941 Acetylcholine receptor 94.4 0.13 2.9E-06 51.9 7.6 127 176-304 86-233 (518)
273 KOG1550 Extracellular protein 94.3 0.71 1.5E-05 48.5 13.1 121 171-297 286-417 (552)
274 KOG1258 mRNA processing protei 94.1 0.78 1.7E-05 48.5 12.8 119 177-297 301-420 (577)
275 PF04910 Tcf25: Transcriptiona 94.1 1.1 2.4E-05 44.7 13.5 115 178-293 45-194 (360)
276 COG4976 Predicted methyltransf 94.1 0.072 1.6E-06 50.8 4.6 64 179-243 1-64 (287)
277 KOG4507 Uncharacterized conser 93.9 0.05 1.1E-06 57.6 3.6 112 200-312 598-711 (886)
278 KOG0551 Hsp90 co-chaperone CNS 93.9 0.29 6.2E-06 48.9 8.6 91 211-303 85-179 (390)
279 KOG2300 Uncharacterized conser 93.9 1 2.2E-05 47.1 12.8 128 176-303 10-153 (629)
280 COG0790 FOG: TPR repeat, SEL1 93.9 0.89 1.9E-05 42.6 11.7 98 187-289 91-199 (292)
281 KOG3364 Membrane protein invol 93.8 0.9 1.9E-05 40.1 10.6 75 207-282 32-110 (149)
282 PF11207 DUF2989: Protein of u 93.8 0.6 1.3E-05 43.4 10.0 72 223-296 121-197 (203)
283 COG3118 Thioredoxin domain-con 93.7 0.89 1.9E-05 44.6 11.5 127 171-301 166-296 (304)
284 PF13374 TPR_10: Tetratricopep 93.6 0.18 3.9E-06 32.9 4.7 29 243-272 3-31 (42)
285 COG4976 Predicted methyltransf 93.5 0.095 2.1E-06 50.0 4.3 58 220-278 7-64 (287)
286 KOG1258 mRNA processing protei 93.2 2.2 4.8E-05 45.2 14.2 117 175-292 368-490 (577)
287 PF02259 FAT: FAT domain; Int 93.1 1.4 3E-05 41.8 11.7 103 173-275 184-341 (352)
288 PF10373 EST1_DNA_bind: Est1 D 92.9 0.38 8.3E-06 44.4 7.4 59 192-251 1-59 (278)
289 PF11207 DUF2989: Protein of u 92.9 0.8 1.7E-05 42.6 9.3 81 179-263 112-198 (203)
290 KOG2471 TPR repeat-containing 92.8 0.25 5.5E-06 51.5 6.5 117 180-298 213-356 (696)
291 KOG1914 mRNA cleavage and poly 92.8 2.4 5.1E-05 44.9 13.5 126 175-301 368-496 (656)
292 COG3898 Uncharacterized membra 92.8 2.7 5.9E-05 43.1 13.6 117 184-301 165-287 (531)
293 KOG0529 Protein geranylgeranyl 92.5 1.2 2.7E-05 45.4 10.8 107 184-290 86-196 (421)
294 PF07079 DUF1347: Protein of u 92.5 1.5 3.2E-05 45.6 11.4 51 249-301 469-519 (549)
295 TIGR02561 HrpB1_HrpK type III 92.4 0.79 1.7E-05 40.8 8.3 71 186-258 23-93 (153)
296 PF04910 Tcf25: Transcriptiona 92.4 1 2.3E-05 44.9 10.2 104 171-275 98-225 (360)
297 PF10602 RPN7: 26S proteasome 92.3 1.5 3.2E-05 39.4 10.2 95 176-272 39-142 (177)
298 KOG3364 Membrane protein invol 92.3 0.61 1.3E-05 41.1 7.4 72 176-248 35-111 (149)
299 PF13374 TPR_10: Tetratricopep 92.2 0.17 3.7E-06 33.1 3.0 27 176-202 5-31 (42)
300 COG3914 Spy Predicted O-linked 91.9 1.6 3.5E-05 46.3 11.1 115 185-301 43-166 (620)
301 smart00386 HAT HAT (Half-A-TPR 91.8 0.48 1E-05 29.0 4.6 29 258-286 2-30 (33)
302 COG2912 Uncharacterized conser 91.7 1.1 2.3E-05 43.4 9.0 67 218-285 191-257 (269)
303 KOG4814 Uncharacterized conser 91.4 1.3 2.8E-05 47.6 9.9 93 177-271 358-456 (872)
304 COG5191 Uncharacterized conser 91.1 0.26 5.7E-06 48.9 4.2 79 173-251 107-185 (435)
305 smart00386 HAT HAT (Half-A-TPR 91.0 0.55 1.2E-05 28.8 4.3 29 188-216 2-30 (33)
306 COG2976 Uncharacterized protei 90.9 3.5 7.6E-05 38.4 11.1 94 179-275 95-191 (207)
307 PF12862 Apc5: Anaphase-promot 90.8 3.1 6.8E-05 33.1 9.6 54 220-274 10-72 (94)
308 PF10373 EST1_DNA_bind: Est1 D 90.7 1 2.2E-05 41.6 7.6 62 227-289 1-62 (278)
309 PF09986 DUF2225: Uncharacteri 90.6 2 4.2E-05 39.9 9.3 79 222-301 91-189 (214)
310 COG3898 Uncharacterized membra 90.3 4.8 0.0001 41.4 12.3 93 180-277 270-363 (531)
311 PF07720 TPR_3: Tetratricopept 90.3 0.91 2E-05 30.7 5.1 33 208-241 2-36 (36)
312 PF08631 SPO22: Meiosis protei 90.3 5.5 0.00012 37.8 12.4 98 175-274 37-152 (278)
313 PLN03138 Protein TOC75; Provis 89.7 0.86 1.9E-05 50.1 7.1 14 227-240 166-179 (796)
314 KOG1914 mRNA cleavage and poly 89.3 7.1 0.00015 41.5 13.0 126 175-301 330-459 (656)
315 KOG1310 WD40 repeat protein [G 89.3 0.88 1.9E-05 48.1 6.4 80 222-301 388-469 (758)
316 KOG2300 Uncharacterized conser 88.9 4.8 0.0001 42.3 11.3 122 175-301 369-509 (629)
317 TIGR02561 HrpB1_HrpK type III 88.4 3 6.4E-05 37.2 8.3 73 220-293 22-94 (153)
318 PF07720 TPR_3: Tetratricopept 87.9 1.7 3.7E-05 29.4 5.1 33 243-276 2-36 (36)
319 COG4649 Uncharacterized protei 87.8 6.6 0.00014 36.4 10.4 132 172-306 57-196 (221)
320 KOG3807 Predicted membrane pro 87.7 5.6 0.00012 40.2 10.6 111 178-293 190-327 (556)
321 PF10602 RPN7: 26S proteasome 87.1 8.1 0.00018 34.6 10.5 92 208-301 37-137 (177)
322 KOG0530 Protein farnesyltransf 86.0 6.3 0.00014 38.6 9.6 90 187-294 40-129 (318)
323 COG2912 Uncharacterized conser 85.7 3.1 6.7E-05 40.3 7.5 76 175-251 183-258 (269)
324 KOG1585 Protein required for f 85.7 7.3 0.00016 37.9 9.8 119 180-301 78-214 (308)
325 PF07721 TPR_4: Tetratricopept 85.5 1 2.2E-05 27.7 2.8 23 244-267 3-25 (26)
326 PF10345 Cohesin_load: Cohesin 85.3 10 0.00022 40.2 11.8 116 190-307 38-169 (608)
327 PF07079 DUF1347: Protein of u 85.0 18 0.00039 37.9 12.9 119 181-301 14-152 (549)
328 KOG2422 Uncharacterized conser 84.7 18 0.00039 38.8 12.9 114 178-293 289-432 (665)
329 KOG2422 Uncharacterized conser 84.1 14 0.00029 39.7 11.8 95 179-274 348-450 (665)
330 PF10345 Cohesin_load: Cohesin 84.0 19 0.00042 38.1 13.2 86 220-306 373-482 (608)
331 COG4455 ImpE Protein of avirul 84.0 8.3 0.00018 36.9 9.3 71 182-253 10-80 (273)
332 KOG4814 Uncharacterized conser 83.6 7.4 0.00016 42.2 9.7 77 221-298 367-449 (872)
333 COG4649 Uncharacterized protei 83.3 24 0.00052 32.8 11.7 108 179-289 100-212 (221)
334 COG3629 DnrI DNA-binding trans 83.1 5.2 0.00011 39.0 7.8 51 220-271 165-215 (280)
335 KOG0890 Protein kinase of the 82.9 7.5 0.00016 47.2 10.3 111 176-290 1673-1802(2382)
336 PF12862 Apc5: Anaphase-promot 82.8 6.6 0.00014 31.2 7.2 55 185-240 10-73 (94)
337 PF04781 DUF627: Protein of un 82.4 8.9 0.00019 32.5 8.0 84 220-303 8-104 (111)
338 PF10579 Rapsyn_N: Rapsyn N-te 82.2 5.8 0.00013 31.8 6.4 52 220-272 18-72 (80)
339 PF09670 Cas_Cas02710: CRISPR- 82.2 21 0.00045 35.9 12.0 59 178-237 136-198 (379)
340 COG3629 DnrI DNA-binding trans 82.1 8 0.00017 37.7 8.7 64 241-305 152-215 (280)
341 PRK13184 pknD serine/threonine 81.6 11 0.00023 42.6 10.5 96 182-279 484-588 (932)
342 KOG0546 HSP90 co-chaperone CPR 80.5 1.5 3.3E-05 44.0 3.2 77 176-253 278-354 (372)
343 PF15015 NYD-SP12_N: Spermatog 80.0 6 0.00013 41.0 7.3 126 178-320 233-361 (569)
344 PF12968 DUF3856: Domain of Un 79.5 17 0.00037 31.8 8.9 85 186-272 22-129 (144)
345 KOG3807 Predicted membrane pro 78.7 9.2 0.0002 38.8 7.9 78 221-301 197-299 (556)
346 PF11846 DUF3366: Domain of un 78.4 12 0.00027 33.3 8.2 50 225-276 128-177 (193)
347 PF04053 Coatomer_WDAD: Coatom 78.3 16 0.00036 37.6 10.0 29 240-269 345-373 (443)
348 COG5107 RNA14 Pre-mRNA 3'-end 78.1 21 0.00046 37.5 10.5 87 187-274 411-497 (660)
349 COG2909 MalT ATP-dependent tra 78.0 30 0.00064 38.7 12.2 117 179-297 421-557 (894)
350 PF00244 14-3-3: 14-3-3 protei 77.8 7.6 0.00016 36.5 6.9 46 190-235 143-196 (236)
351 smart00299 CLH Clathrin heavy 77.7 39 0.00085 28.0 11.4 50 181-232 15-64 (140)
352 PF12968 DUF3856: Domain of Un 77.7 11 0.00023 33.0 7.1 81 220-301 21-124 (144)
353 PF04190 DUF410: Protein of un 77.6 14 0.0003 35.2 8.7 125 176-301 13-165 (260)
354 KOG0546 HSP90 co-chaperone CPR 77.5 2.6 5.5E-05 42.4 3.8 112 181-294 230-360 (372)
355 PF08311 Mad3_BUB1_I: Mad3/BUB 77.3 37 0.00079 28.8 10.4 110 190-301 2-123 (126)
356 PF14863 Alkyl_sulf_dimr: Alky 75.9 16 0.00034 32.0 7.9 47 207-254 70-116 (141)
357 PF04090 RNA_pol_I_TF: RNA pol 75.6 49 0.0011 30.8 11.4 113 176-290 44-191 (199)
358 PF15015 NYD-SP12_N: Spermatog 75.3 40 0.00087 35.2 11.5 115 181-297 184-318 (569)
359 COG3947 Response regulator con 75.1 12 0.00025 37.3 7.5 54 247-301 284-337 (361)
360 COG1747 Uncharacterized N-term 75.0 55 0.0012 35.0 12.6 116 171-289 97-251 (711)
361 PF13041 PPR_2: PPR repeat fam 74.5 15 0.00034 25.3 6.2 41 243-284 4-45 (50)
362 KOG0276 Vesicle coat complex C 74.3 22 0.00049 38.4 9.8 132 141-301 593-745 (794)
363 PRK15490 Vi polysaccharide bio 74.2 24 0.00053 37.7 10.2 83 181-267 16-98 (578)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 73.8 25 0.00054 29.8 8.4 76 190-270 43-126 (126)
365 PF10516 SHNi-TPR: SHNi-TPR; 73.8 5.7 0.00012 27.2 3.6 29 243-272 2-30 (38)
366 PRK15180 Vi polysaccharide bio 73.5 20 0.00043 38.0 9.0 101 186-288 711-821 (831)
367 PF07721 TPR_4: Tetratricopept 72.9 5.1 0.00011 24.5 3.0 24 208-232 2-25 (26)
368 COG5107 RNA14 Pre-mRNA 3'-end 72.8 26 0.00057 36.9 9.6 97 195-294 30-126 (660)
369 COG3947 Response regulator con 71.9 8.3 0.00018 38.3 5.6 53 218-271 289-341 (361)
370 PF02184 HAT: HAT (Half-A-TPR) 71.9 7.5 0.00016 25.9 3.7 28 258-286 2-29 (32)
371 smart00101 14_3_3 14-3-3 homol 71.7 14 0.00031 35.1 7.1 46 190-235 145-198 (244)
372 COG2909 MalT ATP-dependent tra 71.3 35 0.00075 38.2 10.7 124 173-298 347-518 (894)
373 PF10579 Rapsyn_N: Rapsyn N-te 71.1 20 0.00043 28.8 6.6 53 184-236 17-71 (80)
374 smart00101 14_3_3 14-3-3 homol 70.5 38 0.00082 32.3 9.7 49 224-272 144-200 (244)
375 TIGR02710 CRISPR-associated pr 70.2 54 0.0012 33.4 11.2 54 178-232 135-195 (380)
376 PLN03138 Protein TOC75; Provis 70.2 3.3 7.2E-05 45.6 2.8 15 192-206 166-180 (796)
377 KOG2581 26S proteasome regulat 70.2 42 0.00091 34.8 10.3 59 219-278 220-282 (493)
378 KOG0529 Protein geranylgeranyl 69.9 66 0.0014 33.2 11.7 101 190-291 46-159 (421)
379 PF11846 DUF3366: Domain of un 68.9 29 0.00063 30.9 8.2 52 189-242 127-178 (193)
380 KOG4014 Uncharacterized conser 68.3 52 0.0011 30.9 9.7 97 187-289 87-212 (248)
381 COG2015 Alkyl sulfatase and re 68.3 21 0.00046 37.7 7.9 64 246-310 456-529 (655)
382 cd02680 MIT_calpain7_2 MIT: do 67.9 10 0.00023 29.8 4.4 15 222-236 20-34 (75)
383 KOG2041 WD40 repeat protein [G 67.9 24 0.00052 39.0 8.4 81 172-266 795-875 (1189)
384 PF14863 Alkyl_sulf_dimr: Alky 66.7 23 0.0005 31.0 6.8 52 241-293 69-120 (141)
385 KOG3616 Selective LIM binding 65.9 41 0.00088 37.6 9.6 112 180-301 668-815 (1636)
386 KOG0985 Vesicle coat protein c 65.3 51 0.0011 38.0 10.4 68 222-300 1089-1156(1666)
387 COG4455 ImpE Protein of avirul 64.7 31 0.00067 33.1 7.6 58 220-278 13-70 (273)
388 PF09205 DUF1955: Domain of un 64.6 1.1E+02 0.0023 27.5 10.8 80 187-273 70-150 (161)
389 KOG3783 Uncharacterized conser 64.5 21 0.00044 37.9 7.0 97 190-288 250-349 (546)
390 KOG0985 Vesicle coat protein c 63.5 79 0.0017 36.6 11.4 86 204-297 1101-1186(1666)
391 PHA02537 M terminase endonucle 63.0 31 0.00067 32.7 7.4 99 176-275 86-210 (230)
392 KOG3783 Uncharacterized conser 61.9 45 0.00097 35.4 8.9 62 212-275 454-523 (546)
393 PF02184 HAT: HAT (Half-A-TPR) 61.8 15 0.00032 24.5 3.6 28 188-216 2-29 (32)
394 PF04190 DUF410: Protein of un 61.1 72 0.0016 30.3 9.6 120 171-292 88-243 (260)
395 KOG0890 Protein kinase of the 59.2 41 0.00089 41.4 8.9 64 206-273 1669-1732(2382)
396 PRK15180 Vi polysaccharide bio 59.1 44 0.00096 35.6 8.2 47 187-234 303-349 (831)
397 PRK13184 pknD serine/threonine 58.8 57 0.0012 36.9 9.7 88 188-277 534-625 (932)
398 PF05053 Menin: Menin; InterP 58.2 36 0.00078 36.5 7.5 64 172-236 276-346 (618)
399 cd02682 MIT_AAA_Arch MIT: doma 58.2 83 0.0018 24.8 7.9 17 226-242 31-47 (75)
400 cd02682 MIT_AAA_Arch MIT: doma 57.6 53 0.0012 25.9 6.7 46 225-279 4-49 (75)
401 PF00244 14-3-3: 14-3-3 protei 57.0 37 0.0008 31.9 6.8 48 225-272 143-198 (236)
402 KOG0128 RNA-binding protein SA 56.9 1.6E+02 0.0034 33.1 12.2 101 190-292 96-198 (881)
403 TIGR03504 FimV_Cterm FimV C-te 55.7 18 0.00038 25.6 3.4 25 177-201 3-27 (44)
404 KOG1497 COP9 signalosome, subu 54.5 1.6E+02 0.0034 29.9 10.8 91 177-270 107-211 (399)
405 COG4278 Uncharacterized conser 54.2 9.1 0.0002 36.6 2.2 8 153-160 253-260 (269)
406 PF11817 Foie-gras_1: Foie gra 52.7 53 0.0011 30.7 7.1 52 246-298 182-239 (247)
407 PF04053 Coatomer_WDAD: Coatom 52.5 65 0.0014 33.3 8.3 89 176-274 298-404 (443)
408 KOG4014 Uncharacterized conser 52.4 48 0.001 31.2 6.5 96 188-288 50-155 (248)
409 PF12854 PPR_1: PPR repeat 52.2 32 0.0007 22.3 4.0 24 244-268 9-32 (34)
410 PF12739 TRAPPC-Trs85: ER-Golg 52.0 1.9E+02 0.0042 29.2 11.5 111 174-287 209-351 (414)
411 cd02679 MIT_spastin MIT: domai 51.9 28 0.0006 27.7 4.3 17 222-238 3-19 (79)
412 TIGR03504 FimV_Cterm FimV C-te 51.8 26 0.00056 24.7 3.7 26 246-272 3-28 (44)
413 PF11817 Foie-gras_1: Foie gra 51.8 1E+02 0.0023 28.7 9.0 79 189-269 154-244 (247)
414 KOG3074 Transcriptional regula 50.7 10 0.00023 36.1 2.0 27 278-305 156-182 (263)
415 PF09205 DUF1955: Domain of un 50.4 83 0.0018 28.1 7.4 57 181-238 94-150 (161)
416 TIGR02996 rpt_mate_G_obs repea 50.1 33 0.00072 24.3 4.0 30 231-261 5-34 (42)
417 cd02680 MIT_calpain7_2 MIT: do 49.2 29 0.00062 27.3 4.0 15 190-204 4-18 (75)
418 smart00745 MIT Microtubule Int 48.9 33 0.00071 26.0 4.3 13 222-234 22-34 (77)
419 PF12854 PPR_1: PPR repeat 48.8 31 0.00067 22.4 3.6 28 276-303 6-33 (34)
420 smart00777 Mad3_BUB1_I Mad3/BU 48.6 99 0.0022 26.5 7.5 42 260-301 80-123 (125)
421 COG5187 RPN7 26S proteasome re 48.3 1.6E+02 0.0035 29.6 9.8 110 190-301 92-216 (412)
422 smart00671 SEL1 Sel1-like repe 48.1 32 0.00069 21.4 3.5 15 223-237 20-34 (36)
423 PF09670 Cas_Cas02710: CRISPR- 47.6 1.2E+02 0.0027 30.4 9.3 58 213-272 137-198 (379)
424 PF10952 DUF2753: Protein of u 47.4 1E+02 0.0022 27.1 7.3 65 177-242 5-88 (140)
425 PF13226 DUF4034: Domain of un 46.9 2.2E+02 0.0048 27.7 10.5 113 181-293 8-149 (277)
426 PF08626 TRAPPC9-Trs120: Trans 46.7 2E+02 0.0042 33.5 11.7 130 175-305 244-473 (1185)
427 cd02656 MIT MIT: domain contai 46.7 37 0.00081 25.7 4.3 14 222-235 20-33 (75)
428 KOG3024 Uncharacterized conser 46.4 80 0.0017 31.2 7.3 57 211-268 89-152 (312)
429 KOG1839 Uncharacterized protei 46.2 39 0.00085 39.2 5.9 95 177-273 977-1087(1236)
430 KOG2758 Translation initiation 45.7 95 0.0021 31.5 7.8 80 191-272 113-196 (432)
431 PF15469 Sec5: Exocyst complex 45.2 1.3E+02 0.0029 26.5 8.2 19 220-238 98-116 (182)
432 cd02679 MIT_spastin MIT: domai 44.9 37 0.0008 27.0 4.0 43 187-238 3-45 (79)
433 PF01535 PPR: PPR repeat; Int 44.8 36 0.00077 20.3 3.2 22 249-271 7-28 (31)
434 PF10516 SHNi-TPR: SHNi-TPR; 44.5 32 0.00069 23.5 3.2 24 179-202 7-30 (38)
435 PF09797 NatB_MDM20: N-acetylt 44.3 1.2E+02 0.0025 30.0 8.4 46 188-234 198-243 (365)
436 PRK11619 lytic murein transgly 44.2 4E+02 0.0087 28.9 13.0 116 185-304 253-373 (644)
437 cd02678 MIT_VPS4 MIT: domain c 43.0 64 0.0014 24.7 5.1 15 221-235 19-33 (75)
438 cd02683 MIT_1 MIT: domain cont 42.6 1.5E+02 0.0033 23.0 7.2 43 190-241 4-46 (77)
439 COG4941 Predicted RNA polymera 42.1 1.7E+02 0.0037 29.9 9.0 37 244-281 367-403 (415)
440 KOG1839 Uncharacterized protei 41.8 83 0.0018 36.7 7.6 110 190-301 955-1081(1236)
441 cd02677 MIT_SNX15 MIT: domain 41.7 36 0.00078 26.6 3.5 42 190-240 4-45 (75)
442 KOG0889 Histone acetyltransfer 41.1 54 0.0012 41.8 6.3 98 172-272 2811-2915(3550)
443 TIGR00756 PPR pentatricopeptid 40.5 66 0.0014 19.2 4.0 23 249-272 7-29 (35)
444 KOG2041 WD40 repeat protein [G 40.3 59 0.0013 36.1 5.8 29 269-297 844-872 (1189)
445 PF08238 Sel1: Sel1 repeat; I 39.9 71 0.0015 20.2 4.3 14 223-236 23-36 (39)
446 TIGR02996 rpt_mate_G_obs repea 39.8 57 0.0012 23.1 3.9 34 264-297 3-36 (42)
447 smart00299 CLH Clathrin heavy 39.7 1.8E+02 0.0039 24.0 7.8 77 220-298 19-103 (140)
448 PF09797 NatB_MDM20: N-acetylt 39.4 70 0.0015 31.5 6.0 44 223-267 198-241 (365)
449 PF13812 PPR_3: Pentatricopept 39.0 82 0.0018 19.1 4.3 25 246-271 5-29 (34)
450 cd02677 MIT_SNX15 MIT: domain 38.8 46 0.00099 26.0 3.7 14 225-238 4-17 (75)
451 PF10255 Paf67: RNA polymerase 38.7 49 0.0011 33.9 4.8 97 178-275 127-231 (404)
452 KOG2908 26S proteasome regulat 38.3 4.5E+02 0.0097 26.9 11.2 75 241-315 73-153 (380)
453 KOG0128 RNA-binding protein SA 38.0 2.2E+02 0.0048 32.0 9.8 94 207-301 461-558 (881)
454 KOG2581 26S proteasome regulat 37.5 71 0.0015 33.2 5.7 66 176-242 212-281 (493)
455 cd02678 MIT_VPS4 MIT: domain c 37.5 1.8E+02 0.004 22.1 7.5 42 190-240 4-45 (75)
456 KOG3616 Selective LIM binding 37.4 61 0.0013 36.3 5.4 91 175-269 997-1105(1636)
457 COG1747 Uncharacterized N-term 36.8 2.6E+02 0.0057 30.2 9.8 82 187-273 80-161 (711)
458 PF07219 HemY_N: HemY protein 36.6 1.8E+02 0.0038 23.8 7.0 43 248-291 65-107 (108)
459 KOG2034 Vacuolar sorting prote 36.1 41 0.00089 37.7 4.0 83 179-274 364-447 (911)
460 PF14852 Fis1_TPR_N: Fis1 N-te 35.9 29 0.00062 23.4 1.8 30 243-273 2-34 (35)
461 PRK15490 Vi polysaccharide bio 35.4 1.8E+02 0.0039 31.4 8.5 78 221-301 21-98 (578)
462 cd00280 TRFH Telomeric Repeat 35.3 3.2E+02 0.007 25.5 9.1 64 190-254 86-156 (200)
463 KOG4279 Serine/threonine prote 35.1 91 0.002 34.9 6.3 100 187-288 301-411 (1226)
464 PF04212 MIT: MIT (microtubule 34.8 96 0.0021 23.0 4.8 14 225-238 3-16 (69)
465 cd02656 MIT MIT: domain contai 34.6 71 0.0015 24.2 4.1 42 190-240 4-45 (75)
466 KOG1920 IkappaB kinase complex 34.0 1.7E+02 0.0036 34.2 8.3 21 214-234 958-978 (1265)
467 cd02683 MIT_1 MIT: domain cont 34.0 1.7E+02 0.0037 22.8 6.2 45 224-277 3-47 (77)
468 PF01239 PPTA: Protein prenylt 33.7 1.2E+02 0.0026 18.9 4.6 24 228-251 3-26 (31)
469 cd02684 MIT_2 MIT: domain cont 33.0 1.1E+02 0.0023 23.8 4.9 11 226-236 5-15 (75)
470 COG3014 Uncharacterized protei 32.9 2.8E+02 0.0061 28.4 8.9 46 240-286 211-256 (449)
471 PF07219 HemY_N: HemY protein 32.5 1.4E+02 0.003 24.4 5.8 38 220-258 71-108 (108)
472 PF04348 LppC: LppC putative l 32.4 15 0.00032 38.7 0.0 108 190-298 6-119 (536)
473 PRK15326 type III secretion sy 31.9 2.5E+02 0.0054 22.6 6.8 27 222-248 21-47 (80)
474 KOG1166 Mitotic checkpoint ser 31.8 3.2E+02 0.0069 31.4 10.1 91 200-293 72-165 (974)
475 KOG2114 Vacuolar assembly/sort 31.4 2E+02 0.0044 32.4 8.2 80 207-294 368-448 (933)
476 PF04212 MIT: MIT (microtubule 31.1 65 0.0014 23.9 3.4 43 189-240 2-44 (69)
477 KOG1463 26S proteasome regulat 30.6 3.1E+02 0.0066 28.1 8.7 90 185-274 221-318 (411)
478 PF12583 TPPII_N: Tripeptidyl 30.6 1.4E+02 0.0031 26.3 5.7 47 207-254 76-122 (139)
479 KOG3262 H/ACA small nucleolar 30.0 50 0.0011 30.7 2.9 17 207-223 50-66 (215)
480 PF05053 Menin: Menin; InterP 30.0 2E+02 0.0044 31.1 7.7 65 206-272 276-347 (618)
481 TIGR02710 CRISPR-associated pr 29.9 3E+02 0.0066 28.1 8.8 77 211-289 134-219 (380)
482 cd02681 MIT_calpain7_1 MIT: do 29.6 2.8E+02 0.006 21.7 8.2 64 190-272 4-67 (76)
483 KOG4279 Serine/threonine prote 29.2 27 0.00059 38.8 1.3 125 178-304 206-347 (1226)
484 KOG0292 Vesicle coat complex C 29.0 3.6E+02 0.0079 30.9 9.6 120 178-298 996-1139(1202)
485 KOG0739 AAA+-type ATPase [Post 28.4 3E+02 0.0064 28.0 8.1 70 190-268 8-77 (439)
486 TIGR03601 B_an_ocin probable h 27.4 49 0.0011 26.0 2.1 21 147-167 44-64 (79)
487 KOG1456 Heterogeneous nuclear 27.3 51 0.0011 33.8 2.7 28 146-173 1-28 (494)
488 cd00280 TRFH Telomeric Repeat 27.2 5.1E+02 0.011 24.2 9.0 70 224-295 85-162 (200)
489 smart00745 MIT Microtubule Int 27.1 2.7E+02 0.0059 20.9 6.5 70 189-268 5-74 (77)
490 PRK07772 single-stranded DNA-b 27.0 57 0.0012 29.9 2.8 29 147-175 123-151 (186)
491 cd02681 MIT_calpain7_1 MIT: do 26.6 1.4E+02 0.003 23.4 4.6 30 242-272 6-35 (76)
492 KOG2908 26S proteasome regulat 26.3 5.2E+02 0.011 26.4 9.5 83 206-289 73-168 (380)
493 COG4259 Uncharacterized protei 25.9 3.5E+02 0.0077 23.0 7.0 84 204-292 26-117 (121)
494 PF10961 DUF2763: Protein of u 24.9 85 0.0018 25.5 3.2 27 147-173 59-85 (91)
495 PF05268 GP38: Phage tail fibr 24.8 60 0.0013 30.9 2.6 29 144-173 150-187 (260)
496 COG5536 BET4 Protein prenyltra 24.4 1.8E+02 0.004 28.9 5.8 103 189-293 90-203 (328)
497 PF04049 APC8: Anaphase promot 24.3 73 0.0016 27.7 2.9 51 245-299 77-127 (142)
498 KOG1464 COP9 signalosome, subu 24.2 2.1E+02 0.0045 28.7 6.1 48 223-271 42-93 (440)
499 KOG0686 COP9 signalosome, subu 24.2 5.8E+02 0.013 26.7 9.5 86 209-298 152-250 (466)
500 COG2178 Predicted RNA-binding 24.1 6E+02 0.013 23.9 8.9 92 180-272 36-150 (204)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=2e-14 Score=123.73 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=103.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...|++++|..+|++++..+|.++.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~- 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM- 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-
Confidence 5678899999999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.|++++|++.|++|+++.|+++..+..++.+...+
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877654
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.55 E-value=5.2e-14 Score=130.97 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=123.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..-+|.-|.+.|++..|+.-+++||+.||++..++..+|.+ |+..|+.+.|.+.|++|++++|++.+|+.+||+++..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~-Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~- 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY-YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA- 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH-HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence 44577789999999999999999999999999999999988 5789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCCC
Q 020109 256 HKDASRAESYFDQAVKS--APDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPN 316 (331)
Q Consensus 256 ~Gd~deAieyferALel--dPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~~ 316 (331)
.|++++|..+|++|+.. .|..+..+.++|.|-+++|+.+.|++.++ +-.++.+..|+.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~---raL~~dp~~~~~ 175 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK---RALELDPQFPPA 175 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH---HHHHhCcCCChH
Confidence 99999999999999987 35788999999999999999999998887 656666666664
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=4.8e-13 Score=138.68 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=101.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.++..+|++++|+.+|+++|+++|+++..+..+|.++. ..|++++|+.+|++|+.++|+++.++..+|.+++
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346677888888888888888888888888888888888887764 5688888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|+.+|+++++++|++..++..+|.++.++|++++|...++
T Consensus 411 ~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 411 I-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred H-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 8888888888888888888888888888888888888887776665
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=6.9e-13 Score=137.51 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=120.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.++...+++++|+.+|+++|+.+|+++.+++.+|.+++ ..|++++|+.+|++++.++|++..++..+|.++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 3445789999999999999999999999999999999999999976 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++ .|++++|+.+|+++++..|+++.++..+|.++...|++++|+..++
T Consensus 444 ~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 444 YK-EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998776
No 5
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=9e-13 Score=119.55 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=106.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd--~deAi 263 (331)
.++.++++..++++++.+|+|++.|..+|.++ ...+++++|...|++|+.++|+++.++..+|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~-~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYY-LWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 35679999999999999999999999999986 4789999999999999999999999999999986432777 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++++++.+|++..++..+|..+...|++++|+..++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999998887
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=5.2e-13 Score=114.92 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.--..+|+++|+++|++ +..+|.++. ..|++++|..+|++++.++|.++.++..+|.++.. .|++++|+..|+++
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A 84 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA 84 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 44578999999999986 456777765 68999999999999999999999999999999999 99999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 270 VKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 270 LeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++|+++.+++++|.++...|++++|+..++
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999998776
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.8e-12 Score=110.70 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=104.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|.++|++++..+|.++.++..++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3457888999999999999999999999999999999999998865 679999999999999999999988888888887
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|+++++.. +.....+..++.+++..|++++|...++
T Consensus 110 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 110 CQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 788888877777777753 3455667777777777777777776555
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=5.9e-13 Score=123.96 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=115.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~lA~ 250 (331)
+....+|.+|.+.|+.+.|.+.|++|+.++|++.++++|||.||| .+|++++|..+|++|+. +|. -+.++.++++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHH
Confidence 445678999999999999999999999999999999999999998 68999999999999997 665 5567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+ .|+++.|.++|+|+++++|+++.....++..+++.|++-+|..-++
T Consensus 148 Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 148 CALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999986555
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.44 E-value=3.9e-13 Score=138.58 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=84.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.+..++|+|-.|.++|..+-|+.+|++||+++|+.++++.++|..+. ..|+..+|+.||.+||.+.|+.++++.++|.+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 34445666666666666666666666666666666666666666664 35666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. ++.+++|..+|.+|++..|+.+.++.++|.+|.++|++++|..-++
T Consensus 364 ~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 364 YRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred HHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 666 6666666666666666666666666666666666666666664433
No 10
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=1.7e-12 Score=107.44 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=52.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.+++ ..+++++|..+|++++..+|.++.++..+|.+++.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~- 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA- 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-
Confidence 4445555555555555555555555555555555555555433 34555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~ 278 (331)
.|++++|+.+|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccch
Confidence 55555555555555555554443
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=5.3e-12 Score=108.93 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=116.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~vL~~lA~ 250 (331)
.....++|..|...+++++|..+|+++++.+|.++.++.+++.++. ..|++++|+++|++++... +.....+..+|.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 3456788999999999999999999999999999999999999865 6899999999999999854 566778888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++. .|++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 144 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 144 CALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999977763
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.44 E-value=6e-13 Score=137.23 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=108.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+..++|+|+.|.+++.++.|...|++|++.+|..+.+..++|.++ +.+|++++|+.+|+.||.++|..++++.++|..+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 445778888888888888888888888888888888888888775 4678999999999999999999999999999988
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-. +|+.+.|+..|.+|+.++|..++++.++|.+|.+.|+..+|+.-++
T Consensus 433 ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 433 KE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 88 8999999999999999999999999999999999999988887665
No 13
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=1.7e-12 Score=133.69 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred CCcccccHHHHHHh---------CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 172 GSGFSGSNNNYSNN---------NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 172 ~~~~~~N~A~~y~~---------~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
+.....++|.+|.. .+++++|+.++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCH
Confidence 44444555655442 234789999999999999999999998888865 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.. .|++++|+.+|+++++++|.+..++..++.+++..|++++|....+
T Consensus 373 ~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 373 DIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999988 9999999999999999999888777777777888888888887665
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=3.6e-12 Score=121.51 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=111.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..|...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|++.|++|++++|++..++..+|.+++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999864 7899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|++.|+++++++|+++.... +..++...++.++|...++
T Consensus 144 ~-~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 144 Y-GGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK 189 (296)
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 9 99999999999999999999985322 2233455678899988775
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.9e-12 Score=132.05 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=118.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..+...+++++|+.+|++|++++|+++.+++.+|.++. ..|++++|+.+|++|++++|.++.+...++.
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 455667789999999999999999999999999999999999999875 6899999999999999999999988777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|++++|+.+++++++.. |+++..+..+|.+|..+|++++|....+
T Consensus 415 ~~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 415 ITYY-HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHHh-ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888 899999999999999885 7899999999999999999999998776
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=4.3e-12 Score=105.08 Aligned_cols=108 Identities=18% Similarity=0.094 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 194 e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
+.|++++..+|++..+...+|.++. ..+++++|.++|++++..+|.++.++..+|.+++. .+++++|+.+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999875 68999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 274 PDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 274 Pdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
|++..+++.+|.+++..|++++|...++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999877633
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=5.7e-12 Score=123.75 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=106.5
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
...|..++..++|++|+.+|++||+++|+++.+++++|.++. ..|++++|+.++++|+.++|+++.++..+|.+++. .
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-L 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-h
Confidence 345778889999999999999999999999999999999975 68999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|++++|+.+|+++++++|++..+...++.|..++.+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999777743
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=4.2e-12 Score=115.17 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd--yeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.....++|.+|...+++++|+.+|++|++++|+++.++..||.+++...|+ +++|.+.+++|++++|+++.++..+|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4456778999999999999999999999999999999999999986556677 59999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~v 279 (331)
..++. .|++++|+.+|+++++++|.+..-
T Consensus 152 ~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 152 SDAFM-QADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHH-cCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999 999999999999999999965533
No 19
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=3.3e-12 Score=122.49 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=106.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
+=|+-+.+.++|.+|+..|.+||+++|+|+.++.+-|.++. ..|.|+.|.+-|+.||.+||+.-.+|..++.++.. +|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cC
Confidence 34455667899999999999999999999999999999965 68999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
++++|++.|++||+++|++..++.++-.+-.++++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999988888887776
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.38 E-value=7.6e-12 Score=128.32 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=88.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...|++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..+|.++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4455666667777777777777777777777777777666666643 4555 6677777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+. .|++++|+++|+++++.+|.++.++..++.+++..|++++|...++
T Consensus 848 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 848 VE-KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 7777777777777777777777777777777777777777776654
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.6e-12 Score=121.53 Aligned_cols=128 Identities=24% Similarity=0.266 Sum_probs=101.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+..+..-+|.++.+.|+.++|+.+|++||+.+|+|+.++..|+.++. ..|++++|.+.+++.....|.|+.++..+|.+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999998864 57899999999999999889999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++. .|++++|+.+|+++++.+|+|+.++..+|.++...|+.++|....+
T Consensus 224 ~~~-lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 224 YLQ-LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH-HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred hcc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999 9999999999999999999999999999999999999999986654
No 22
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=1.1e-11 Score=131.69 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=122.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
......|+|......|.+++|...++++++.+|++..++.++|.++. ..+++++|...+++++..+|+++.++..+|.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999987 57999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+ .|++++|+++|+++++.+|+++.++..+|++|...|+.++|...++
T Consensus 164 l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 164 WDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999997665
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.36 E-value=6.4e-12 Score=132.26 Aligned_cols=127 Identities=20% Similarity=0.143 Sum_probs=95.7
Q ss_pred CcccccHHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ek----A~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.....++|..|...|++++ |+.+|+++++.+|+++.++..+|.++. ..|++++|+.++++++.++|+++.++..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~L 324 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4456677777777777764 677777777777777777777777754 56777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.++.. .|++++|+..|+++++.+|++..++..++.++...|++++|...++
T Consensus 325 a~~l~~-~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 325 ARALRQ-VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777 7777777777777777777777666667777777777777777665
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.4e-12 Score=134.95 Aligned_cols=126 Identities=18% Similarity=0.134 Sum_probs=95.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.+|.-+.....+|+|+.||++||..||.+..+|+++|.++ ..+++++.|+-+|++|+++||.+-..+..++.++.+
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy-~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~- 535 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY-LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ- 535 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe-eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-
Confidence 334444555556677777777777777777777777777774 367788888888888888888888888888888877
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.|+.|+|+.+|++|+.++|.++...+..+.++..+++++||-.++||.
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887777643
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=1.7e-11 Score=129.12 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=116.4
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdyee----Aee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.+++..|...+++++|+..|+++++.+|+++.++.++|.++. ..|++++ |+.+|++|++++|+++.++..+|.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999976 6799885 89999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|+++++++|++..++..++.+|...|++++|...++
T Consensus 295 ~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 295 IR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998886
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-12 Score=135.75 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=113.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
+|+||.-+++++.|+++|++||++||+.+.++..+|.=+- ...++++|..+|++||..+|.+..+|+.+|.+|.+ +++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence 4678899999999999999999999999999888885432 56899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.|+-+|++|++++|.+..+...++.++-+.++.++|....+
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999997776
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=2.8e-11 Score=132.77 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=105.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
++..+...|++++|+.+|+++++.+|+ +.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++.. .|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCC
Confidence 344444558999999999999999996 888889998865 68999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++|+++|++|++++|+++.+++++|.++...|++++|+..++
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999987776
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.31 E-value=2.2e-11 Score=133.60 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=121.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....|+|.++.+.|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|++|++++|+++.+...++.++....+++.+..+.+
T Consensus 688 ~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 688 QR-LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HH-CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998776
No 29
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=5.2e-11 Score=86.58 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=89.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++..|.++.++..+|.++. ..+++++|.++|++++...|.+..++..+|.+++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK- 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999998875 57999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 020109 256 HKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 256 ~Gd~deAieyferALeldPd 275 (331)
.+++++|..++.++++..|.
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999998873
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.27 E-value=1.1e-10 Score=119.67 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=114.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....+++.++...|++++|+..+++++..+|+++.+++.+|.++. ..|++++|.++|+++++.+|+++.++..+++++.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999998864 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .++ .+|+.++++++++.|+++.++..++.++...|++++|...++
T Consensus 816 ~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 816 E-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred h-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8 888 889999999999999999999999999999999999998877
No 31
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=6.4e-11 Score=107.21 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---I 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---v 244 (331)
.....+.++|..+...+++++|+..|++++..+|+++ .+++.+|.+++ ..+++++|...|++++..+|+++. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445678888899999999999999999999999876 46678888865 679999999999999999998776 5
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHhh
Q 020109 245 LSLYADLIWQAH--------KDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 245 L~~lA~ll~~~~--------Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~eEa~~~ 299 (331)
+..+|.+++. . +++++|+++|+++++.+|++..++ ..+|.++++.|++++|...
T Consensus 110 ~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 110 YYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7778888876 5 788889999999999999876543 3567888888998888877
Q ss_pred hhh
Q 020109 300 NEE 302 (331)
Q Consensus 300 ~e~ 302 (331)
+++
T Consensus 189 ~~~ 191 (235)
T TIGR03302 189 FET 191 (235)
T ss_pred HHH
Confidence 663
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.9e-11 Score=120.01 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=104.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
|++|.-+++.++|+.||++||++||+...+|...|.=+.+ ..+-..|.+.|++||.++|.|..+|+.+|.+|.- ++=.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence 4677888888999999999999999999999998866444 5788889999999999999999999999999888 8888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.=|+-||++|+++.|+|..+|..+|.||.++++.+||++=.
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88999999999999999999999999999999999998644
No 33
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.2e-10 Score=103.19 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=92.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.++-+|..+...|++++|+..|+.+..+||.++.+|++||.++ +..|+|.+|+.+|.+|+.++|+||....++|.+++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999995 678999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 020109 255 AHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 255 ~~Gd~deAieyferALeld 273 (331)
.|+.+.|++.|+.|+..-
T Consensus 116 -lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 -CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -cCCHHHHHHHHHHHHHHh
Confidence 999999999999999986
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.25 E-value=1.3e-10 Score=129.08 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=100.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL------ 251 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l------ 251 (331)
+.+..+...+++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|++|++++|++..++..++.+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 34667778888888888888888888888888888888864 67888888888888888888888776555443
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 252 ------------------------------------IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 252 ------------------------------------l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eE 295 (331)
+.. .|++++|+++|+++++++|+++.+++.++.+|+..|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334 6888888888888888888888888888888888888888
Q ss_pred HHhhhhh
Q 020109 296 EEQDNEE 302 (331)
Q Consensus 296 a~~~~e~ 302 (331)
|+..++.
T Consensus 514 A~~~l~~ 520 (1157)
T PRK11447 514 ADALMRR 520 (1157)
T ss_pred HHHHHHH
Confidence 8877763
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.24 E-value=1.9e-10 Score=110.58 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=85.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----ILSLYAD 250 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-----vL~~lA~ 250 (331)
..++|..|...|++++|..+|+++++.+|.+..++..++.++. ..|++++|.++++++++.+|.+.. ++..+|.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777776653 467777777777777776665432 3445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++.. .+++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 189 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 189 QALA-RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHh-CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666 67777777777777777777777777777777777777777665553
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.6e-10 Score=110.17 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 187 HGSSSTDAYYEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yekALeldP---~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
...+.++..+.++|...| . .+.+++.+|.++. ..|++++|...|++|++++|+++.++..+|.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 466899999999997544 3 3677889998864 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.|+++++++|++..++.++|.+++..|++++|...++
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998776
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.23 E-value=2.6e-10 Score=91.00 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=93.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA 249 (331)
.++.|..+...+++++|+.+|++++..+|++ +.+++.+|.+++ ..+++++|..+|++++..+|++ +.++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4577889999999999999999999999987 567888999875 6799999999999999999986 67899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.++.. .+++++|+.+|+++++..|++..+..
T Consensus 84 ~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQE-LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHH-hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999 99999999999999999999886544
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.23 E-value=1.8e-10 Score=127.98 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=117.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL---------------------------------- 217 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL---------------------------------- 217 (331)
+.....++|.+|...+++++|+.+|+++++.+|++..++..++.++
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 4556778999999999999999999999999999998877666542
Q ss_pred -------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 218 -------KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 218 -------y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+...|++++|+++|++|++++|+++.++..+|.+++. .|++++|+.+|+++++.+|+++.+++.++.++...
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 1246899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHhhhh
Q 020109 291 GEDEEEEQDNE 301 (331)
Q Consensus 291 G~~eEa~~~~e 301 (331)
+++++|...++
T Consensus 543 ~~~~~Al~~l~ 553 (1157)
T PRK11447 543 DRDRAALAHLN 553 (1157)
T ss_pred CCHHHHHHHHH
Confidence 99999987765
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=3.1e-10 Score=121.30 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=117.3
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..+.++|.++...+++++|+.+|+++|+.+|+++.++..+|.++. ..+++++|..+++++++.+|+++. +..+|.++.
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 347889999999999999999999999999999999999998865 689999999999999999999999 999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|+..|++++++.|++..++..++.++...+..++|...++
T Consensus 128 ~-~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 128 R-AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9 9999999999999999999999999999999999999988876654
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=4.1e-10 Score=108.32 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=108.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~ 253 (331)
+..++|..+...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|.++|++++..+|.+ ..++..++.++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999899998864 6899999999999999998876 456778888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
. .|++++|+.+++++++..|+... +..++.++.+.|++++|...+++
T Consensus 261 ~-~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 261 A-LGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHH
Confidence 8 99999999999999999997654 48899999999999999987763
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.21 E-value=2.8e-10 Score=103.06 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=109.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-------RGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~-------~GdyeeAee~~erAL~ldP~d~~v 244 (331)
...++|.+|...+++++|+..|+++++.+|+++. +++.++.+++.. .+++++|.+.|++++..+|++..+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 4578899999999999999999999999999887 577788876532 278999999999999999999765
Q ss_pred H-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 L-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L-----------------~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. ..+|.+++. .|++.+|+..|+++++..|+. ..+++.++.++..+|++++|....+
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 245777888 999999999999999997754 5899999999999999999997665
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=1.1e-10 Score=109.10 Aligned_cols=129 Identities=22% Similarity=0.186 Sum_probs=103.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeld--P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++...+..+...+...++++++...++++.... +.++.++..+|.++. ..|+.++|+++|++|+.++|+|+.++..+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 355666778889999999999999999988766 678999999999964 78999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++. .|+++++.+.+++..+..|.++.++..+|.++..+|++++|...++
T Consensus 187 ~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 187 AWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 999999 9999999999999999999999999999999999999999998776
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.9e-10 Score=112.32 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=116.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
...+.+|.-|.++++...|+..|++|+.++|.|-.+|+++|+.+ ...+-..=|+-||++|++.-|+|+.+|..+|.+|.
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY-eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY-EIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH-HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999994 67888999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+ .++.++|++.|.+|+...-.+..++..+|.+|.+.++.++|..
T Consensus 444 k-l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 444 K-LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred H-hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9 9999999999999999999999999999999999999999984
No 44
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=1.5e-09 Score=95.23 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
......++|..|...+++++|+.+|++++..+|+. +.++.++|.++. ..|++++|+.+|++|+..+|+++..+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44567889999999999999999999999987764 467888998865 68999999999999999999999999999
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKD--------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd--------------~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.++.. .++ +++|+++++++++.+|++. ......+..+|+
T Consensus 113 g~~~~~-~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHK-RGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY---IEAQNWLKTTGR 166 (172)
T ss_pred HHHHHH-cCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH---HHHHHHHHhcCc
Confidence 999988 777 6889999999999999873 344444555544
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=3.6e-10 Score=83.97 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP 274 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G-d~deAieyferALeldP 274 (331)
+++.++..+|.+++ ..+++++|+.+|++||+++|+++.++..+|.+++. .+ ++++|+++|+++++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 36778888888865 57899999999999999999999999999999888 88 68999999999999887
No 46
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=9.6e-10 Score=97.38 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=92.9
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 200 IEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 200 Leld-P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
..+. ++.-+.++.||..++ ..|++++|+.+|+-++.+||.++..+..+|.++.. +|++.+|+..|.+|+.++|+++.
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCch
Confidence 3456 677788899999887 58999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++.|.|+...|+.+.|.+-++
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999987665
No 47
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=2.2e-09 Score=101.35 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=116.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
++.-+++.....|+|..|+..++++...+|+|.+++..+|.++- ..|+.+.|..-|.+|+++.|+++.++.++|..+.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 34448889999999999999999999999999999999999964 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.||++.|..++..+...-+.+..+..+++.+.-..|++++|+.+-
T Consensus 181 -~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 -RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred -cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999999999999999999999999999999998543
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.1e-10 Score=112.85 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=95.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------ 220 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~------------------------------ 220 (331)
.|+..-+..|..++-.++|+.|++-|++++.++|++...+..++.++|+.
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI 471 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 78889999999999999999999999999999999999888888777742
Q ss_pred ---cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 221 ---RGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 221 ---~GdyeeAee~~erAL~ldP~------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
++++++|+++|++|+.+.|. ++..+..-|.+.+++.+++++|+.++.+|+++||..-.++..+|.+..++|
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 24555555555555555555 555555555555555566666666666666666666667777777777777
Q ss_pred CchHHHhhhh
Q 020109 292 EDEEEEQDNE 301 (331)
Q Consensus 292 ~~eEa~~~~e 301 (331)
+-++|+...+
T Consensus 552 ~i~eAielFE 561 (606)
T KOG0547|consen 552 KIDEAIELFE 561 (606)
T ss_pred hHHHHHHHHH
Confidence 7777775444
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=5.5e-09 Score=90.98 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=84.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.....++|.++..++++++|..+|++++.+.|+. +.++.++|.++. ..|++++|+.+|++|+.++|.+...+..+|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4456788899999999999999999999887763 457888888864 689999999999999999999999988888
Q ss_pred HHHH-------HHcCCHH-------HHHHHHHHHHHhCCCCH
Q 020109 250 DLIW-------QAHKDAS-------RAESYFDQAVKSAPDDC 277 (331)
Q Consensus 250 ~ll~-------~~~Gd~d-------eAieyferALeldPdna 277 (331)
.+++ . .|+++ +|+.+|++++..+|++.
T Consensus 114 ~i~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888 6 67766 66666667888888554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.03 E-value=2.7e-09 Score=105.99 Aligned_cols=126 Identities=16% Similarity=0.080 Sum_probs=110.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPSDG--NIL 245 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npea----l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~--~vL 245 (331)
+..+...++..+...|++++|...++++++.+|++... +..+..+ ..++..++++.++++++.+|+|+ .++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l---~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL---KPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc---CCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 56778899999999999999999999999999998753 2222222 35788999999999999999999 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFD--QAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyfe--rALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..||+++++ .|++++|.++|+ ++++..|++.. +..++.++++.|+.++|...+++
T Consensus 339 ~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 339 RALGQLLMK-HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999 999999999999 68888896665 66999999999999999988874
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=3.3e-09 Score=113.53 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=112.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
..+++..+.+.+++++|+.++++++..+|.. ..++..+|.++. ..|++++|++++++++...|+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-YSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 4566777889999999999999999998732 345667787764 689999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
++.++..+|.++.. .|++++|++.|+++++++|++..+++.++.++..++++++|+...+..
T Consensus 392 n~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 392 NQGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999776543
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.7e-09 Score=109.74 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=113.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
+|..|...++.++-..+|.+|..+||+|+.+++.-|++.+ ..++|++|..-|++|+.++|++++.+..++.++++ +++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHH
Confidence 5677888889999999999999999999999999999976 67999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++..|+.+.+..|+-+.++..+|.+|.++++++.|++.+.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999996443
No 53
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=7.5e-09 Score=100.91 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=85.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA- 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~- 259 (331)
++...+.+++|+..+.++|+++|++..+|...+.++.. .+ ++++|+.+++++++.+|++..++...++++.. .++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence 45555677788888888888888877777777777653 34 56777777777777777777777777777766 6653
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 -SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 -deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++++++++++.+|.|..+|...+.++...+++++|...++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 567777777777777777777777777777777777765444
No 54
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=6.9e-09 Score=105.02 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=115.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..+..|..+...++++.|...++..|...|+|+.++...+.++. ..++..+|.+.+++|+.++|+.+.+..+||.++++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34557888889999999999999999999999999999898865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++.+|+.++++.+..+|+++..|..++..|..+|+..++..-.-
T Consensus 387 -~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 387 -GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred -cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999999999999999999999999999999888875443
No 55
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=6.5e-09 Score=75.39 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+++.+|.+++ ..+++++|..+++++++..|.+..++..+|.+++. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4667888765 57999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HcCCchHHHhhhh
Q 020109 289 DAGEDEEEEQDNE 301 (331)
Q Consensus 289 klG~~eEa~~~~e 301 (331)
..+++++|....+
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 9999999987665
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.9e-09 Score=107.64 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=104.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
+-|+.+++.++|..|+.+|.+||..+|+|+.++.|.|.++ ...+++..|+..++++++++|+....+..-|.+++. +.
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~-~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk 440 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY-LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MK 440 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HH
Confidence 3467788899999999999999999999999999999885 478999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+|++|++.|..+++++|.+..+...+.+|+..+
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=6.9e-09 Score=98.05 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=116.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.|++..|...|+-+.+..+..+++..+|.+.+.+..++..+. ..|++.+|+..+++|..++|+|..++..+|.+|-+ .
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-L 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-c
Confidence 789999999999999999999999999999999988888765 68999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|++++|..-|.||+++.|+++.+..+++..|+-.|+++.|+..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999997654
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=9.1e-09 Score=109.81 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=117.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+-..|+.++.+|++++|...+..+|..+|.++.+++.+|.+ |+.+||.++|..++-.|--++|+|...|..++....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~- 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ- 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Confidence 34578899999999999999999999999999999999999 5789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+-+|.+||+.+|.+-...+.++.+|.+.|+...|....+
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9999999999999999999999999999999999999988886665
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.4e-09 Score=84.49 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
+++++.|+.+|+++++.+|. +..+++.+|.+++ ..|+|++|.+++++ +..+|.++.++..+|.++++ .|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 46778888888888888884 4556666787776 57888888888888 77777777777788888888 88888888
Q ss_pred HHHHHH
Q 020109 264 SYFDQA 269 (331)
Q Consensus 264 eyferA 269 (331)
++|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888765
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=1.4e-09 Score=80.16 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=29.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn 276 (331)
..|++++|+.+|++++..+|+++.++..+|.+++. .|++++|+.+|+++++++|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 34555555555555555555555555555555555 555555555555555555544
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.3e-09 Score=79.04 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=59.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+++ ..|++++|..+|++++.++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999999999999999999976 78999999999999999999986
No 62
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=1.6e-09 Score=80.55 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP 239 (331)
++....++|..+...+++++|+.+|.++|+.+|+++.+++++|.++. ..+ ++.+|+++|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 34456789999999999999999999999999999999999999975 678 79999999999999998
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2.1e-09 Score=110.36 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
+..-.++|..|-..+| -+|++...|+.+++ +.++|++|..||+.||+.+|+|...|..||-.+.. ..+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHH
Confidence 4567888999999999 79999999999977 78999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.||+++.|....++|++|..++.+|.|.||.+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999995
No 64
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.5e-08 Score=97.41 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--KDASRAESY 265 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~--Gd~deAiey 265 (331)
..+..+.-.+.-|+.||+|.+-|..+|.++ ...+++..|..-|.+|+++.|+|++++..||.+++... ..-.+|..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~y-m~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAY-MALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 457777777778888888888888888774 46788888888888888888888888888887775523 334566788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 266 FDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 266 ferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
|++++++||++..+++.+|..+...|++.+|...++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8888888888888888888888888888888877773
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.93 E-value=1.5e-08 Score=109.69 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=106.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..+..+....++|+++.|...|+++++.+|+++.....++.++. ..|++++|+.++++++.-+|.....+..+|.++..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999755457777754 57999999999999993333444444444779888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++++|+++|+++++.+|+++.++..++.++.+.++.++|....+
T Consensus 115 -~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 115 -EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred -cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877
No 66
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=3.1e-08 Score=96.62 Aligned_cols=113 Identities=10% Similarity=-0.015 Sum_probs=101.0
Q ss_pred cccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 176 ~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd--yeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
-.+.+.++...+ ++++|+.+++++++.+|++..+|...+.++. ..++ ++++..+++++|+++|+|..++...++++
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345566777777 5799999999999999999999998887764 4555 37889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.. .+++++|+++++++|+.+|.|..+|.+++.++...
T Consensus 153 ~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 153 RT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99 99999999999999999999999999999998776
No 67
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.91 E-value=4.4e-08 Score=98.25 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=110.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
|-.+...+-+++...+.++.|+..|++..+.+|+ +...+|.++. ..++..+|.+++.++|+.+|.+...+...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344445567888889999999999999999875 4555787754 57889999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .++++.|++..++|+++.|++...|+.++.+|..+|++++|...+.
T Consensus 244 Ll~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 244 LLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999 9999999999999999999999999999999999999999986654
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.4e-08 Score=108.27 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=101.2
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+...+.|+|..+.+++++++|...+++++..+|+++.+++.+|.++. ..|+|++|+.+|++++..+|+++.++..+|.
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356678999999999999999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
++.. .|+.++|...|++|++...+-...+.
T Consensus 197 ~l~~-~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 197 SLTR-RGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHH-cCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999 99999999999999999876665543
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.5e-08 Score=95.94 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++...-.-+|..|...+++..|...|++|+++.|+|++++..||.+++...+ .-.+|.+.+++|+..||+|+.++++|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 5555556689999999999999999999999999999999999988875554 44779999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|..+++ .|+|.+|+..++..++..|.+..-...+
T Consensus 234 A~~afe-~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFE-QGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHH-cccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999 9999999999999999998665443333
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.90 E-value=1.7e-08 Score=99.36 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
...|..++ ..++|++|+++|++||.++|+++.++..+|.++.. .|++++|+.++++|++++|+++.+++.+|.+|..+
T Consensus 6 ~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34455554 57999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHhhhh
Q 020109 291 GEDEEEEQDNE 301 (331)
Q Consensus 291 G~~eEa~~~~e 301 (331)
|++++|...++
T Consensus 84 g~~~eA~~~~~ 94 (356)
T PLN03088 84 EEYQTAKAALE 94 (356)
T ss_pred CCHHHHHHHHH
Confidence 99999996554
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=2.2e-08 Score=95.31 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=101.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-------------------------------------NYARFLK 218 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~-------------------------------------~yA~lLy 218 (331)
....+..+...+++++|..+++++++.+|++..++. .+|.+ +
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~-~ 124 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG-L 124 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH-H
Confidence 345677788889999999999999999998886543 11112 2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCch
Q 020109 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDE 294 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~e 294 (331)
...|++++|++.++++++++|+++.++..+|.+++. .|++++|+.+++++++..|.+. ..+..++.++...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 346889999999999999999999999999999998 9999999999999999887433 24567899999999999
Q ss_pred HHHhhhhhc
Q 020109 295 EEEQDNEEG 303 (331)
Q Consensus 295 Ea~~~~e~~ 303 (331)
+|...+++.
T Consensus 204 ~A~~~~~~~ 212 (355)
T cd05804 204 AALAIYDTH 212 (355)
T ss_pred HHHHHHHHH
Confidence 999888743
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.89 E-value=4.5e-08 Score=93.09 Aligned_cols=108 Identities=8% Similarity=0.083 Sum_probs=94.5
Q ss_pred CCcccccHHHHH-HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020109 172 GSGFSGSNNNYS-NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNI 244 (331)
Q Consensus 172 ~~~~~~N~A~~y-~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~v 244 (331)
.....++.|..+ .+.++|++|+..|++.+...|++ +.+++.+|.+++ ..|++++|..+|++++...|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 445567788876 56789999999999999999998 579999999976 689999999999999998887 5777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
+..+|.++.. .|++++|+.+|+++++..|+...+..
T Consensus 220 l~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 220 MFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8888999999 99999999999999999998885533
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=3.9e-08 Score=78.31 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl 280 (331)
+..++..|..+. ..+++++|.++|++++..+|++ +.++..+|.+++. .+++++|+.+|+++++..|++ ..++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456778888865 6899999999999999999987 5688899999999 999999999999999999875 6789
Q ss_pred HHHHHHHHHcCCchHHHhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++.++...+++++|...++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQ 100 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHH
Confidence 999999999999999998776
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=6.9e-09 Score=106.60 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=107.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..-.-+|.+|...++|++|+.||+.||..+|+|...|+.||..+. ...+..+|+..|.||+++-|....+++++|..++
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 345567788888999999999999999999999999999999876 5678899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC-----C-----HHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAPD-----D-----CYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPd-----n-----a~vl~~lA~~L~klG~~eEa~~ 298 (331)
. .|.|++|.++|-.||.+.+. . -.+|..+=.++...++.+-+..
T Consensus 510 N-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 510 N-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred h-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9 99999999999999999764 1 2477777777777787775543
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=3e-08 Score=86.37 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~n--peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~lA~ll~~~~Gd~d 260 (331)
..++..+...+.+.++.++.+ ..++..+|.++ ...+++++|+.+|++|+.+.|+ .+.++..+|.++.. .|+++
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~ 89 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHT 89 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHH
Confidence 356788888887777777776 55567778775 4689999999999999999776 34689999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCchHHHhhhh
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLW-------DAGEDEEEEQDNE 301 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~-------klG~~eEa~~~~e 301 (331)
+|+++|++|++++|.....+..++.++. .+|++++|...++
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999999999999999999999999 7778776665443
No 76
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=3.1e-08 Score=100.37 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 188 GSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 188 d~ekA~e~yekAL---eldP~npeal~~yA~lLy~~--------~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
..+.|..+|.+|+ ++||..+.++..+|.+++.. ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 4578999999999 99999999999999776433 2355779999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++.|+..|+||+.++|+.+.+|+.+|.++.-.|+.++|....+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999987665
No 77
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=5.1e-08 Score=100.78 Aligned_cols=124 Identities=9% Similarity=-0.033 Sum_probs=102.2
Q ss_pred cccHHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHH
Q 020109 176 SGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-------GDFAKAEELCGRAILA--NPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~g---d~ekA~e~yekALeldP~npeal~~yA~lLy~~~-------GdyeeAee~~erAL~l--dP~d~~ 243 (331)
.+-.|..|.... ++.+|+.+|++|+++||+++.++..++.++.... .+..+|.+..++++.+ +|.++.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 444555555443 3789999999999999999999998876543221 2345677778887774 888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|..... .|++++|+.+|++|++++| +...|..+|.++...|+.++|+..++
T Consensus 422 ~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 422 IYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 9999999999999999999 58899999999999999999998776
No 78
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.6e-08 Score=98.12 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=101.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP----GN-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP----~n-----------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
-|+.|++.++|..|+.-|++|+..=+ .+ ...+.|+|.++ ...++|.+|++++.++|..+|+|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~-lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY-LKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH-HhhhhHHHHHHHHHHHHhcCCCchh
Confidence 35688899999999999999988633 11 12356777774 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+|+.-|.++.. .++|+.|+..|++|++++|+|-.+...+..|..+..++.+.+
T Consensus 293 ALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 293 ALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999998887766665
No 79
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.84 E-value=6e-09 Score=80.96 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.++|++|+.+|++++..+|. +..++..+|.++++ .|++++|+.++++ ++.+|.+...++.+|.|+.++|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 56677778999999 9999999999999 88999999999999999999999999998
Q ss_pred hhh
Q 020109 299 DNE 301 (331)
Q Consensus 299 ~~e 301 (331)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.83 E-value=8.4e-08 Score=95.21 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=111.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+......||..+...|+.++|...++++++ .|.++.....|+.+ ..++.++|.+.+++.++..|+|+..+..+|.+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 344667789999999999999999999999 55577776777766 24899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.. .+++++|.++|+++++..|++.. +..++.++...|+.++|...++++
T Consensus 338 ~~~-~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 338 LMK-HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHH-CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 99999999999999999997654 568999999999999998777644
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=4.8e-08 Score=93.05 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=88.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~----vL~~lA 249 (331)
....++|..+..+|++++|...|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++. .+..+|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 445678889999999999999999999999999999999999987 589999999999999999886543 345789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldP 274 (331)
.++.. .|++++|+.+|++++...|
T Consensus 194 ~~~~~-~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLE-RGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHH-CCCHHHHHHHHHHHhcccc
Confidence 99999 9999999999999988877
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.3e-08 Score=75.26 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.|++++|+.+|++++..+|+++.++..+|.++. ..|++++|.+++++++..+|+++.++..+|
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 444555555555555555555555555555533 345555555555555555555544444443
No 83
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.78 E-value=1.1e-07 Score=103.14 Aligned_cols=124 Identities=15% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+..+|..|..++++++|++.|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++..
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 34455789999999999999999999999999999998877754 6799999999999999999998777 556777776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|++.|+++++.+|++..++..+...+.+.|-...|....+
T Consensus 182 -~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 182 -TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred -cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 7888789999999999999999999999999999999988886554
No 84
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=7e-08 Score=86.14 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=97.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-+|.-+...|++++|...|+-....||.|+.++.+||.++ +..++|++|+.+|..|..++++||...+..|.+++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~- 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL- 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-
Confidence 566788889999999999999999999999999999999995 688999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
.|+.+.|+..|+.+++ .|.+..+.......+-
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLE 149 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHH
Confidence 9999999999999999 5776665544444333
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=8.1e-08 Score=84.21 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=82.8
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 196 yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+...+..++ ..+.+++.+|.++. ..|++++|..+|++|+.+.|+. ..++..+|.++.. .|++++|+.+|++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 99 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 344444444 45667788888864 6899999999999999988764 4688999999999 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 271 KSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 271 eldPdna~vl~~lA~~L~klG~~eE 295 (331)
+..|++...+..++.++...++...
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHh
Confidence 9999999999999999999888433
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.4e-08 Score=100.93 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=115.6
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
=|+..+.|-++.-+.+|++++|.+.|+.||..|....+++++++... +.+|+.++|+.+|-++-.+=-++..|++.+|.
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57777888888888899999999999999999999999999999884 68899999999999988777789999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+|.. +.+..+|+++|.|+..+-|+++.++..++.+|-+.|+.-.|.
T Consensus 567 iye~-led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 567 IYEL-LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHH-hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 9999 999999999999999999999999999999999999877665
No 87
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.75 E-value=3.8e-07 Score=77.90 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=97.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 020109 185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKD 258 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd 258 (331)
..++...+...+++.+..+|+. ..+...+|.+++ ..|++++|...|++++...|++ +.+...+|.+++. .|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 4678899999999999999998 445566788876 6899999999999999988765 4467789999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++|+..+++ +.-.+..+.++..+|.+|...|++++|...++
T Consensus 101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999966 45556777889999999999999999997765
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3e-08 Score=73.24 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=60.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
..|++++|+++|++++..+|++..++..+|.+++. .|++++|..+++++++.+|+++.++.-++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 47999999999999999999999999999999999 999999999999999999998888776664
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.74 E-value=7e-08 Score=72.21 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
..|..++++++|..++++++..+|+++.++..+|.+++ ..|++.+|.+.|+++++.+|+++.+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34445555555555555555555555555555555543 3455555555555555555555544433
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.73 E-value=3.1e-07 Score=91.35 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=110.0
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-~vL~~lA~ll~~~ 255 (331)
..-|......|+++.|...+.++.+..|+...++...|.+. ...|++++|.++++++.+..|++. .+...++.++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa-~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~- 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAA-QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA- 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-
Confidence 44566777889999999999999999998777777777775 468999999999999999999986 577778999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|...++++++..|+++.++..++.++...|+++++...++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987665
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-07 Score=99.15 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=118.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
.+..+...++.++|-.|+.+|-.++|-.+..++..|.++ +..|++.+|.+.|..|+.+||+++.....+|.++.+ .|+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~-~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~ 733 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL-EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGS 733 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH-HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCC
Confidence 456667778889999999999999999999999999885 578999999999999999999999999999999999 999
Q ss_pred HHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCC
Q 020109 259 ASRAES--YFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPP 315 (331)
Q Consensus 259 ~deAie--yferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~ 315 (331)
..-|.+ ++..|++++|.++.+|+.+|.++.+.|+.+.|..=++.--+..+..|+.|-
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 988988 999999999999999999999999999999888533322223367777553
No 92
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.9e-08 Score=98.89 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCH---HHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PSDG---NILSLYADL 251 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld----P~d~---~vL~~lA~l 251 (331)
+|--|...++++.|..+|.+|+.+.|++|.++.-+|.+.| ..+.|.+|..+|+.++..- +..+ ..+.++|.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 3445556677788888888888888888888777777766 3577788888888777222 1211 236778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.+ .+.+++|+.+|+++|.+.|.+..++..+|.+|..+|+.+.|+.
T Consensus 465 ~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 465 YRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 888 8889999999999999999999999999999999999888873
No 93
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.70 E-value=9.3e-08 Score=103.00 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=73.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+++|+.|..+|+|++|..||.++++.+|++ ...++++|+.. ...|+++.|..+|++.++..|++++++..+|.+|..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~-i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY-IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH-HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 5666666666677777777777777776666 55556666663 356667777777777777777777766666666654
Q ss_pred HcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 255 AHK----DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 255 ~~G----d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+ ..++|..++.++++..|.+..+|..++.+|...
T Consensus 389 -~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 389 -SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred -hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 32 556666666777777776666666666655544
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.6e-08 Score=97.40 Aligned_cols=135 Identities=23% Similarity=0.145 Sum_probs=111.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.++|.+..+...++.++|.+||.+.-.+--++.++++.+|.+ |+...+..+|++++-+|..+-|+||.++..+|.+|-+
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani-ye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI-YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 477888888888888888888888777777788888888887 4677888888888888888888888888877665544
Q ss_pred HcCC----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 255 AHKD----------------------------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 255 ~~Gd----------------------------------~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.|+ .++|+.||++|--+.|+.......++.|+.+.|+|+.|...+
T Consensus 605 -egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 605 -EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred -ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 444 466789999999999999999999999999999999999988
Q ss_pred hhcccccCCCCCCCCCc
Q 020109 301 EEGQHQTDHSHTSPPNF 317 (331)
Q Consensus 301 e~~~~~~~~~~~~~~~~ 317 (331)
+ ++|..+|.++
T Consensus 684 k------~~hrkfpedl 694 (840)
T KOG2003|consen 684 K------DIHRKFPEDL 694 (840)
T ss_pred H------HHHHhCccch
Confidence 8 7888888764
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.68 E-value=5.2e-07 Score=89.60 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=101.5
Q ss_pred CcccccH-HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 173 SGFSGSN-NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~-A~~y~~~gd~ekA~e~yekALeldP~npeal~~y-A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+...+.+ +.....+|+++.|..+|++|.+.+|++..+.... +.+ +...|++++|...++++++.+|+++.++..++.
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l-~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI-QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3343444 5555888999999999999999999986655433 555 357899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKS------------------------------------------APDDCYVLASYAKFLW 288 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALel------------------------------------------dPdna~vl~~lA~~L~ 288 (331)
++.. .|++++|++++.++.+. .|+++.++..++..+.
T Consensus 196 ~~~~-~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 196 AYIR-TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHH-HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 9998 99999999666665533 3446667778899999
Q ss_pred HcCCchHHHhhhh
Q 020109 289 DAGEDEEEEQDNE 301 (331)
Q Consensus 289 klG~~eEa~~~~e 301 (331)
..|+.++|...++
T Consensus 275 ~~g~~~~A~~~L~ 287 (398)
T PRK10747 275 ECDDHDTAQQIIL 287 (398)
T ss_pred HCCCHHHHHHHHH
Confidence 9999999998776
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.65 E-value=1.9e-07 Score=69.88 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
...+++++|.+++++++.++|+++..+..+|.+++. .|++++|++.|+++++..|++..+....+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 468999999999999999999999999999999999 999999999999999999999887665543
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=2.4e-07 Score=100.85 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=95.8
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------- 235 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--------------- 235 (331)
.|..++..+|.||.+++++++|...|+++|+.||+|+.++++||+++.+. +.++|++++.+|+
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 46678899999999999999999999999999999999999999987543 6666666665555
Q ss_pred -----HhCCCCHHHHHHH--------H------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 236 -----LANPSDGNILSLY--------A------------DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 236 -----~ldP~d~~vL~~l--------A------------~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
..+|++.+.+..+ + ..|.. .+++++++.+++.+++.+|.|..+...++.||...
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 5566666653322 2 33344 78999999999999999999999999999999954
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=5.2e-07 Score=85.67 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=89.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~-yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
...-.|-+|+..+++++|+++|+..|+-||.|..++-. +|.+ ..+|+--+|++-+..-+...++|.++|..++.+|+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAil--ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAIL--KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHH--HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44557888999999999999999999999988776543 4444 35677777777777778888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
. .++|++|.-.|++++-+.|.++..+..+|.+++.+|-
T Consensus 166 ~-~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 166 S-EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred h-HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7 7888888888888888888777777777777777765
No 99
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.62 E-value=2.7e-07 Score=95.18 Aligned_cols=125 Identities=23% Similarity=0.269 Sum_probs=103.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----SD- 241 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-----~d- 241 (331)
+.++|.+|..++++++|+..|++||.+ +|.-+.++.+||.+++ ..|++++|+.||++|+.+-- +.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 346999999999999999999999986 5555677889999976 78999999999999986542 23
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSA-----PDD---CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeld-----Pdn---a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+..++.++-. ++++++|+.+|.+++++. +++ +.++.++|.+|...|+++||+...++
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3345566777777 999999999999999873 233 46788999999999999999976653
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.57 E-value=7.5e-07 Score=84.78 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPd---na~v 279 (331)
+....+..|..+....++|++|...|++.+...|++ +.+++.+|.+++. .|++++|+.+|+++++..|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 455556666554345699999999999999999998 5799999999999 99999999999999999886 5688
Q ss_pred HHHHHHHHHHcCCchHHHhhhh
Q 020109 280 LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+|.++...|++++|...++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999887
No 101
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=5.2e-07 Score=87.10 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=77.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..++|.+|+..|.+||+++|.|+.++.+.|-+|.+ .|.++.|++-.+.||.+||....+|..+|.+|..+|++++|+.-
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999965
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 172 yk 173 (304)
T KOG0553|consen 172 YK 173 (304)
T ss_pred HH
Confidence 43
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.4e-06 Score=88.56 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=93.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 199 MIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 199 ALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
+...+|.-+.+++..|...| ..+++++|+..++.++..-|+|++++...+.+++. .++.++|++.+++++.++|+...
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred HHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccH
Confidence 33445778888888888866 57999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+||..|.+.|++++|+..+.
T Consensus 376 l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999998887
No 103
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.53 E-value=2.8e-07 Score=90.86 Aligned_cols=105 Identities=19% Similarity=0.092 Sum_probs=94.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
+-|+++|.|++|+.||.++|.++|-|+.++.+-|..+ .....+..|+.-|..||.+|-....++...+.+-+. .|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AY-lk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAY-LKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHH-HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHH
Confidence 4678999999999999999999999999999988875 467999999999999999999888899999998888 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L 287 (331)
+|.+-++++|++.|++..+.-.++.+-
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999887666655543
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.53 E-value=1.1e-06 Score=90.88 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=107.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------ 238 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld------ 238 (331)
...+.|.+..+..++++++|+.+|++++++ ++.-+....+||.+++ ..|+|.+|+++|++||++.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccC
Confidence 345889999999999999999999999986 2334667889999865 6899999999999999875
Q ss_pred --CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 239 --PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 239 --P~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------dPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+....++..+|..+.+ .+++.+|..+|.+++.+ .|+-..++.+++.+|..+|++++|++..
T Consensus 404 ~~~~~~~~l~~la~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred cChhhhHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3346678889999988 99999999999998876 3466688999999999999999999643
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=1.6e-07 Score=98.83 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=109.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
.....+++|.+|..+++..++++|-....|++++.+.. ...+++.|.++|.+++.++|++.+++.+++..+.+ .++-.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ 570 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKK 570 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhH
Confidence 33445689999999999999999999999999998854 67999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|...+++|++.+-.+..+|.++..+..+.|++++|...+.
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999997654
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.51 E-value=1.2e-06 Score=79.47 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--R-------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--- 256 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~--~-------GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~--- 256 (331)
++.|.+.++..+..||.|++.++++|..|.++ . .-+++|+.-|++||.++|+..+++..+|.++.. .
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence 57899999999999999999999999776543 1 245778999999999999999999999988855 3
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 257 --------KDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 257 --------Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
.-|++|..+|++|+..+|++...+-.+..+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 348889999999999999998666655444
No 107
>PRK11906 transcriptional regulator; Provisional
Probab=98.50 E-value=1.4e-06 Score=88.57 Aligned_cols=110 Identities=7% Similarity=0.067 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
.+..+|....++|+++||.|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++.+|++.+. .|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45689999999999999999999999999877 46889999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHcCCchHHHh
Q 020109 267 DQAVKSAPDDCYVLASYAKF-LWDAGEDEEEEQ 298 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~-L~klG~~eEa~~ 298 (331)
++|++++|....+-...-.+ .+-....++++.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999665443333333 333445666664
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=1.7e-06 Score=92.81 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=112.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
-+....+-+|.+|+++|+.+++..++..|-.++|++.+.|..+|... ..++++.+|.-||.+||+.+|.+.......+.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls-~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS-EQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 56666788999999999999999999999999999999999999996 47899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++-+ +|+..+|.+.|.+++++.|... +....+++.+...++.+.|.+.++
T Consensus 250 L~~~-~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 250 LYQK-TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHH-hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999 9999999999999999999222 223345677777777766666554
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.49 E-value=3.6e-06 Score=78.95 Aligned_cols=126 Identities=17% Similarity=0.071 Sum_probs=101.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSL 247 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~ 247 (331)
...+..|.-+...+++++|+..|++++...|..+.+. ..+|.+++ ..+++++|..+|++.++..|+++. +++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3366778888999999999999999999999987765 67888876 689999999999999999998654 5666
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCC
Q 020109 248 YADLIWQAHK---------------D---ASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGE 292 (331)
Q Consensus 248 lA~ll~~~~G---------------d---~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~ 292 (331)
.|...+. .+ | ..+|+..|++.|+..|+..++ -+.+|.+|++.|.
T Consensus 112 ~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 112 RGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6665432 22 2 357889999999999988764 2356888999999
Q ss_pred chHHHhhhh
Q 020109 293 DEEEEQDNE 301 (331)
Q Consensus 293 ~eEa~~~~e 301 (331)
+.-|+.-.+
T Consensus 191 y~AA~~r~~ 199 (243)
T PRK10866 191 YVAVVNRVE 199 (243)
T ss_pred hHHHHHHHH
Confidence 988886665
No 110
>PRK15331 chaperone protein SicA; Provisional
Probab=98.49 E-value=6.5e-07 Score=80.01 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.++.-+.++.+|.-+| ..|++++|+.+|+-+...||.|+.++..+|-++.. +++|++|+..|..|..++++++...+.
T Consensus 33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence 4445566778887777 58999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e 301 (331)
.|.|+..+++.+.|..-++
T Consensus 111 agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999999999999986444
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=1.2e-06 Score=95.60 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=107.2
Q ss_pred CCCCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 020109 169 GGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------- 241 (331)
Q Consensus 169 ~~~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------- 241 (331)
+..|...+.-+...|...+++++|+..++.+++.+|+...+++.+|.+++ ..+++.+|.-. +++.+-+.+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34566667778888989999999999999999999999999999999654 55656555444 444444444
Q ss_pred ------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 242 ------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 242 ------------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.++++.+|.+|-+ +|+.++|...|+++++.+|+|+.++.+||.+|... +.++|....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4999999999999 99999999999999999999999999999999999 999998543
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=1.4e-06 Score=74.37 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
....+|..+...|++++|+..|++++...|+. +.+...+|.++. ..+++++|+..++. +.-.+-.+.++...|++
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 34568899999999999999999999988765 456778898875 68999999999976 45566778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 020109 252 IWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 252 l~~~~Gd~deAieyferAL 270 (331)
+.. .|++++|+..|++||
T Consensus 128 ~~~-~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 128 YLA-QGDYDEARAAYQKAL 145 (145)
T ss_pred HHH-CCCHHHHHHHHHHhC
Confidence 999 999999999999985
No 113
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.46 E-value=3.1e-06 Score=71.81 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=80.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~l 248 (331)
..++.|..+...|+.++|+.+|+++++..... ..++..+|..+ ...|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastl-r~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTL-RNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 35678889999999999999999999976554 45677888886 4789999999999999998888 77888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALel 272 (331)
|.+++. .|+.++|+..+-+++.-
T Consensus 82 Al~L~~-~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYN-LGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHH
Confidence 999898 99999999999888764
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.46 E-value=4.9e-06 Score=86.25 Aligned_cols=79 Identities=29% Similarity=0.354 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|++++|.+++++||...|..++.+...|.++-. .|++++|.++++.|.++|+.|-++....+..+.+.|+.++|++...
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566666666666666666666666666666666 6666666666666666666666666666666666666666665554
No 115
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.5e-07 Score=90.75 Aligned_cols=123 Identities=9% Similarity=0.013 Sum_probs=97.2
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.+...|+.++.++++++|.++|+.+++.+|.|.++....|.-++ ..++.+-|..||++.|+..-.+|+.+.++|.+.+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 345567899999999999999999999999999888777765433 4678888888888888888888888888888887
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~ 298 (331)
- .+++|-++.-|+||+...- .-+++||+++.+....|++.-|..
T Consensus 370 y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 370 Y-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred h-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 7 7888888888888877643 345778888877777777777664
No 116
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.7e-06 Score=93.60 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=108.3
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~ 246 (331)
.|+.++..+|++|+-.++|..+...+..|+...-.. ++.++.+|..++ .+|||++|..||.++++.+|++ ...++
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCcccccc
Confidence 689999999999999999999999999999987554 444888999854 7899999999999999999999 77788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.+|..++. .|+++.|+..|++.++..|+++.++..+|.+|...+
T Consensus 347 GlgQm~i~-~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 347 GLGQMYIK-RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred chhHHHHH-hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 89999999 999999999999999999999999999999999885
No 117
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=7.6e-06 Score=69.45 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPd---na~vl 280 (331)
|.+++.+|.++ ...|+.++|+.+|++|+...... ..++..+|..+.. .|++++|+.++++++...|+ +..+.
T Consensus 1 ~~~~~~~A~a~-d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAH-DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 35678888886 47899999999999999987665 4578889999999 99999999999999999998 88899
Q ss_pred HHHHHHHHHcCCchHHHhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~ 300 (331)
..++.++...|+++||...+
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999998654
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-06 Score=86.00 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=88.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.|+|.+|.+.+.|..|+.++.++|+.+|+|..+++.-|.++. ..++|+.|...|++|++++|+|-.+...+..+.-+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999964 689999999999999999999999999999988883
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020109 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deAieyferALeldP 274 (331)
....++..++|.+++..-+
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4455555788998888766
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.8e-06 Score=88.54 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=95.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
..+..++|+.|+.+|..||.++|.|-..+.+-...+. ..++|++|.+--.+.+.++|+=+..|...|..++- .|+|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHH
Confidence 3456799999999999999999998888777655543 67999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L 287 (331)
|+..|...|+.+|+|..++..++.++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999998888
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.39 E-value=1.5e-06 Score=88.12 Aligned_cols=68 Identities=16% Similarity=0.055 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+|+++.+++++|.+++ ..|+|++|+.+|++||+++|+++.+ ++++|.+|.. +|++++|+++|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 4445555555554443 3455555555555555555554432 4445554444 45555555555555544
No 121
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2e-06 Score=86.52 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=111.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------ 220 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~------------------------------ 220 (331)
-|--+++-+|++|+..|++++|+..|+++.-+||.+...+-.||.++.+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 46667888999999999999999999999999999998888888776421
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 221 ---RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 221 ---~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.+++..|..+.+++|..+|++..++.+.|.+++. .++.++|+-.|..|+.+.|.+-+.|.-+-++|...++..||.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 1477888899999999999999999999999888 899999999999999999988899999999999999988887
Q ss_pred hhh
Q 020109 298 QDN 300 (331)
Q Consensus 298 ~~~ 300 (331)
..-
T Consensus 389 ~~A 391 (564)
T KOG1174|consen 389 ALA 391 (564)
T ss_pred HHH
Confidence 543
No 122
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=2.4e-06 Score=81.40 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=101.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
.|.+|....++.+.|..+|.+|++..+-+..+|..+|.+-+...++.+.|..+|+++++..|.++.++..|...+.. .+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~ 84 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hC
Confidence 46678888888999999999999666668889999998866556777779999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHHhhh
Q 020109 258 DASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 258 d~deAieyferALeldPdna---~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+.+.|..+|++++..-|... .+|..+..+-.+.|+.+...+..
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988555 78999999999999876665443
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.36 E-value=2.9e-06 Score=76.91 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=96.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~l 248 (331)
.++..|..+...|++.+|+..|++.+...|.. +.+...+|..++ ..+++++|...|++.+...|+++ ++++..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 35677889999999999999999999999985 557788888876 68999999999999999999866 467777
Q ss_pred HHHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQA----------HKDASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~----------~Gd~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~~eEa~~~~e 301 (331)
|..++.. .....+|+..|+..++..|++..+ -+.+|.+|++.+.+.-|..-.+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7776551 233458999999999999988765 2356888999998888876554
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.9e-07 Score=89.12 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=108.6
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN------------YARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~------------yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
-|...++..+.++.-..+.++|+.+|+++|.++|.....-.. -|.-++ ..|+|.+|.++|-.||.+|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNID 279 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCC
Confidence 455556666667777788999999999999999987654332 232333 4689999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 239 PSDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 239 P~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
|++.. .+...|.+..+ .|+..+|+.-.+.|++++|.-..++...|.|+..++++++|..+.+.-++
T Consensus 280 P~n~~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ccccchhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98654 45566778888 99999999999999999999999999999999999999999988874433
No 125
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=6.3e-06 Score=76.52 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=93.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNAL-----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npe-----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
-++++|+|++|..-|..||+.-|..+. .+.+-|.++ ..++.++.|++-|-+||+++|.+..++...|.+|-+ +
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-M 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-h
Confidence 456789999999999999999998533 344445443 357899999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa 296 (331)
.+|++|++-|++.++++|....+....+++--...+..|.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999998888777777666665554333
No 126
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=85.19 Aligned_cols=119 Identities=10% Similarity=-0.000 Sum_probs=90.9
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.-+++.|...++.+.|...|...+...|.+.-++...|.++ +..+++++|.++|+++++++|.|.++....|..+|- .
T Consensus 260 llLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~-eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~ 337 (478)
T KOG1129|consen 260 LLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH-EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-D 337 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH-HHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-C
Confidence 34566666666666666666667777777777777777774 466788888888888888888888888888887777 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.+-|+.||.|.+++.-.++..+.++|.|.+..++++-+-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888888888888888888777776554
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.3e-05 Score=76.43 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=105.0
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
...+..+-|..|+.+.-...|+.+.+....|.++ +..++|++|+++|+..|+-||.|..++...-.++-. +|+--+|+
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l-Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka-~GK~l~aI 140 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL-EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA-QGKNLEAI 140 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH-cCCcHHHH
Confidence 3457889999999999999999999999999886 689999999999999999999998887755444444 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.+...++..+.|.++|..++.+|...|+++.|..=+||.
T Consensus 141 k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 141 KELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999766643
No 128
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=1.3e-05 Score=76.55 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=95.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA 249 (331)
.||.|.-+.+.|+|..|+..|++-|..-|++ +.+++.|+.++| .+|+|+.|..+|..+++..|+. |+.+..+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7999999999999999999999999999985 778899999987 6899999999999999998875 57799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.++.+ .++-++|...|+++++..|+...+...
T Consensus 223 ~~~~~-l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGR-LGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999 999999999999999999987765443
No 129
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=7.6e-06 Score=80.21 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=106.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.+-.+...|.+.+++++|++.-++...+.+.+- -++..||... ....+.++|.+.+.+|++.||++..+-..+|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~-~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA-LASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 355678899999999999999999999988753 2344455443 3467899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdn-a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+... .|+|+.|++.++++++-+|+. +.+...+..||..+|+.++...=++
T Consensus 222 ~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 222 RVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999 999999999999999999955 4788899999999999988875443
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.32 E-value=4.5e-06 Score=82.52 Aligned_cols=125 Identities=19% Similarity=0.144 Sum_probs=99.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------HHcC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK---------------------------------EVRG 222 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy---------------------------------~~~G 222 (331)
..-+|+-+..++++..|...|..|++.||++..+++.-|.++. ..+|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 3446777888899999999999999999999888877665421 1247
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH---HHHHH------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 223 DFAKAEELCGRAILANPSDGNIL---SLYAD------------LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 223 dyeeAee~~erAL~ldP~d~~vL---~~lA~------------ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
++++|+.-|+++|+-+|++..++ ..++. -++- .||+.-|+++..+.|++.|-++.++...+.||
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 88889999999998888654433 23321 2222 58888999999999999999999999999999
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...|+...|+.|++
T Consensus 200 i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLK 213 (504)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999999887
No 131
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.31 E-value=9.4e-06 Score=85.34 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=109.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--------------- 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--------------- 239 (331)
+--.++++-++.++.-+|...++++...||+|+.+|...-.+-. ..|+.+.|+...-+||+..|
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 44568888888899999999999999999999999887776643 57999999999999998888
Q ss_pred ---------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 240 ---------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 240 ---------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+.++...|.++|. ..++++|.++|.|||+++|++.++|..+-.++...|..++-...+.
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~-e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWS-EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 577778888999999 9999999999999999999999999999999999998766665443
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.30 E-value=2.3e-06 Score=92.82 Aligned_cols=125 Identities=16% Similarity=0.055 Sum_probs=109.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------V 220 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~-----------------------------------~ 220 (331)
+.-+|.+|....+...|..||++|.++||.+.++....+..+.+ .
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34567788877788999999999999999999987776655321 1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.++...|...|+-|+..+|+|...+..++.+|.. .|++..|++.|.+|..++|.+.+..+..+......|+|.++-..+
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2577889999999999999999999999999999 999999999999999999999999999999999999999998666
Q ss_pred h
Q 020109 301 E 301 (331)
Q Consensus 301 e 301 (331)
+
T Consensus 654 ~ 654 (1238)
T KOG1127|consen 654 G 654 (1238)
T ss_pred H
Confidence 5
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.6e-06 Score=85.51 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=106.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------H
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL------------S 246 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL------------~ 246 (331)
=+.++-..++++.|...--..+++|+.+.++++.-+.++| ...+.++|...|+++|.++|+..... .
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 3567778899999999999999999999999998888877 57999999999999999999876543 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.-|.-+++ .|++.+|.+.|..||.++|++. ..|.++|.+..++|+..||+.++++
T Consensus 254 ~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 254 ERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 34677788 9999999999999999999554 5688999999999999999999974
No 134
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.28 E-value=1.3e-05 Score=83.14 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=109.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-+|.+|...|++++|.+++++||+..|..++++..-|.++. ..|++.+|.++++.|-.+|+.|-++....+..+++
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR- 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR- 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-
Confidence 5667999999999999999999999999999999999999976 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSA--PDD-------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeld--Pdn-------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|+.++|++.+..-.+.+ |.. .+.....|.+|.+.|++..|-+-+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998887766 311 2344566999999999999986544
No 135
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.26 E-value=5.7e-06 Score=86.55 Aligned_cols=123 Identities=12% Similarity=-0.021 Sum_probs=109.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.+...|+-++|..+.+.++..|+.....|--||.+ ++...+|++|++||..|+.++|+|-.++..++.+..+ +++++-
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~-~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL-QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHH-HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhh
Confidence 34456788999999999999999999999889988 4678999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
....-.+.+++.|.+-..|..++..+--.|++..|..+.++-...
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877644433
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=2.5e-06 Score=90.11 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=109.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----H----------------------HcCCHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-----E----------------------VRGDFAKA 227 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy-----~----------------------~~GdyeeA 227 (331)
..-+...||...|+..+|....++-|+ +|.++..|..+++++. + ..++|++|
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 345677889999988999998888888 6667777777766531 0 13689999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 228 ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++++.++++|-.+..|+.++.+.++ .++++.|.++|.+++.++|++...|.+++..|.+.++..+|...++
T Consensus 505 ~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 505 DKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999986655
No 137
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=8.1e-06 Score=84.39 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=110.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.-.|-+|.-.+++.+|..||-||-.+||....+|..||..+. ..++.++|..+|.+|-++-|..-.-...+|.=+.+ .
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t 393 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-T 393 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-h
Confidence 334567788899999999999999999999999999998865 68999999999999999999887777788888888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
++++.|..+|.+|+.+.|.++.++-.+|.+.+..+.+.+|+.-+
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999544
No 138
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.23 E-value=6.8e-06 Score=87.27 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee--~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.|..+..+++.++|+.+|..|+.+||+++.....+|.++. ..|+..-|+. ++..|+++||.|+++|+.+|.++.. .
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~ 767 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-L 767 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-c
Confidence 4578888899999999999999999999999999999975 5788777877 9999999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 020109 257 KDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 257 Gd~deAieyferALeldPdna 277 (331)
|+.++|.+.|+.|+++++.++
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999998766
No 139
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=5.3e-06 Score=79.89 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=98.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.-...-...+|..+++++.|...++++-+.+.+.......-|.+.. ..| .+.+|..+|+......+..+..+..+|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34445556778999999999999999998887765554444444432 334 689999999999888889999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.+.+. +|++++|++.+++|++.+|.+++++.+++.+...+|+..++.
T Consensus 209 ~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 209 VCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 99999 999999999999999999999999999999999999984443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=1.3e-05 Score=80.66 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+..-.-+|+.+...++..+|+..+.++|..+|.+.+.+...|.++. ..++++.|+++.++|+.+.|++...|..+|.+|
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445568999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 020109 253 WQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 253 ~~~~Gd~deAieyferALel 272 (331)
.. .|+++.|+..+..+=-.
T Consensus 279 i~-~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 279 IQ-LGDFENALLALNSCPML 297 (395)
T ss_pred Hh-cCCHHHHHHHHhcCcCC
Confidence 99 99999999776644333
No 141
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=8.4e-06 Score=77.12 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=92.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.|+..+.|+.|+.+|.+||.++|..+.++.+-|.++. ..++++.+++-+.+|++++|+-...++.++..+.+ ...|++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccH
Confidence 3445688999999999999999999999999998865 57999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCchHHH
Q 020109 262 AESYFDQAVKSA-----PDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 262 AieyferALeld-----Pdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+..+.+|..+. |.-.+++..+-++-....+..++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~ 137 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEK 137 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHH
Confidence 999999996652 222344445544444444444444
No 142
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.16 E-value=4e-05 Score=76.48 Aligned_cols=126 Identities=20% Similarity=0.132 Sum_probs=107.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+-...-||..+...++++.|.+..+.+|+..-+.. +..+...+ ..+++..=++..++.++..|++|..+..+|.++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 34455688999999999999999999999865433 33333332 468999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
++ .+.+.+|.++|+.|++..| +...+..+|+++.++|+.++|+...++..
T Consensus 339 ~k-~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 339 LK-NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HH-hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99 9999999999999999999 66678899999999999999997776544
No 143
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.14 E-value=8.8e-06 Score=85.17 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=105.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
++.++|.+.....+..|...|..++.+...|..++ -.|+-++|..+++.++..|+.....|-.+|.++.. .++|++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHH
Confidence 34479999999999999999999999999998876 57999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.|..|++++|+|..+|..++....+.++++-...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999876654
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=3.4e-06 Score=64.04 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPS---DGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~---d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..++.++|.+++ ..|++++|+.+|++|+.+ .++ -+.++..+|.++.. .|++++|+++|++|+++
T Consensus 5 a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 445666676654 567777777777777744 112 24456667777777 77777777777777765
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.13 E-value=2.5e-05 Score=82.17 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=116.9
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
-.....-++++..-.++.++|+.+++++|+..|....+|..+|+++ +..++.+.|.+.|..-++..|+.+..|..++.+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~-e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE-EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH-HHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 3456677888999999999999999999999999999999999995 578999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
-.+ .|+.-+|...++++.-.+|.+..+|.....+-.+.|+.+.|+.
T Consensus 729 eEk-~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 729 EEK-DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHH-hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 888 8999999999999999999999999999999999999998873
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=2e-05 Score=81.64 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALel--dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
..++....++++.+ +|.++.++..+|.... ..|++++|...+++|+.++| +..++..+|.++.. .|++++|+++|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 35666677776664 8888888888887653 68999999999999999999 58899999999999 99999999999
Q ss_pred HHHHHhCCCCH
Q 020109 267 DQAVKSAPDDC 277 (331)
Q Consensus 267 erALeldPdna 277 (331)
++|+.++|.++
T Consensus 477 ~~A~~L~P~~p 487 (517)
T PRK10153 477 STAFNLRPGEN 487 (517)
T ss_pred HHHHhcCCCCc
Confidence 99999999655
No 147
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.09 E-value=1.1e-05 Score=82.10 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=60.9
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCchHHHhhhh
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY---VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~---vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+++..+.++|.+++. .|+|++|+..|++||+++|++.. +|+++|.+|..+|+.++|...++
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 689999999999999999 99999999999999999999985 49999999999999999998776
No 148
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=4.6e-05 Score=74.86 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=95.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~Gd~de 261 (331)
+....+.++|+..+.+|++.||++..+-..+|.+. ...|+|++|.+.++++++.||+. ++++..+..+|.+ .|+.++
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~-~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~ 267 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVE-LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE 267 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH-HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence 34457889999999999999999999999999996 47899999999999999999985 5688889999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+.++.++.+..+.....+.-+-.+...-|..+-.....+
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 9999999999999666555444444444454433333444
No 149
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.09 E-value=0.00022 Score=57.54 Aligned_cols=118 Identities=26% Similarity=0.294 Sum_probs=74.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK 257 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~---npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~G 257 (331)
.+...++++.|..+|.+++..+|. ....+..++..+ ...+++++|...+.+++...+. ...++..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALL-EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH-HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 566667777777777777666652 333333333332 2456777777777777777777 56666777777766 67
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++|+.++.+++...|.....+..++..+...++.+++....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777656666666666665555555554443
No 150
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.07 E-value=0.00018 Score=58.02 Aligned_cols=126 Identities=21% Similarity=0.145 Sum_probs=100.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-FLKEVRGDFAKAEELCGRAILANP---SDGNILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~-lLy~~~GdyeeAee~~erAL~ldP---~d~~vL~~lA 249 (331)
....+.+.++...+++..|...+.+++..++.+......+.. ++ ...+++++|..+|++++..+| .....+..++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL-YELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 345667788888888999999999999988887554444444 43 468999999999999988877 3455555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+.. .+++++|+..+.++++..+. ....+..++.++...++++++.....
T Consensus 175 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 226 (291)
T COG0457 175 ALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE 226 (291)
T ss_pred hHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH
Confidence 65666 88999999999999999998 68999999999999998888886554
No 151
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.06 E-value=4.5e-05 Score=85.30 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=114.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~ 253 (331)
+.-+..+|.+-.++++|.++|+.+++..-+....|..||.++. .+.+.++|...+.+|++--|. +..+....|.+-|
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 4456778999999999999999999999999999999999985 567778999999999999998 8889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+ .||.+++..+|+-.|..+|...++|..|.+.-.+.++.+.....+|
T Consensus 1612 k-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1612 K-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred h-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999888877665
No 152
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=0.00014 Score=65.97 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=94.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVR----------GDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~----------GdyeeAee~~erAL~ldP~d 241 (331)
....+|..+...++++.|+..|++.+...|+++ .+++..|.+.+... ....+|...|+..|...|+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 356789999999999999999999999999875 46666676654332 23357999999999999998
Q ss_pred HHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHH
Q 020109 242 GNILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 242 ~~vL~-----------------~lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~eEa~ 297 (331)
+.+-. ..|.++++ .+.+..|+..|+.+++..|+.. .++..++..+.++|..+.+.
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 77632 13788888 9999999999999999999776 45788899999999988544
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.01 E-value=9.6e-06 Score=61.56 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=50.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh---CC-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NP-GN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel---dP-~n---peal~~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
..|+|.+|...+++++|+.+|++++.+ .+ .+ ..++.++|.++. ..|++++|++++++|+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999976 22 22 446778898865 789999999999999986
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.01 E-value=0.00027 Score=66.33 Aligned_cols=125 Identities=11% Similarity=0.015 Sum_probs=99.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------------CC---HHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVR--------------GD---FAKAEELCGRAI 235 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~--------------Gd---yeeAee~~erAL 235 (331)
..++|..|.+.+++++|+.+|++.++.+|+++. +++.+|.+.+... .| ..+|.+.|++.|
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li 151 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV 151 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998754 4566665421110 12 246889999999
Q ss_pred HhCCCCHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchH
Q 020109 236 LANPSDGNILSL-----------------YADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 236 ~ldP~d~~vL~~-----------------lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~eE 295 (331)
...|+..++-.. .|.++++ .+.+.-|+.-++.+++..|+.. ++++.+...|..+|..++
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 999987665222 3678888 9999999999999999998554 678888999999999999
Q ss_pred HHhhhh
Q 020109 296 EEQDNE 301 (331)
Q Consensus 296 a~~~~e 301 (331)
|.....
T Consensus 231 a~~~~~ 236 (243)
T PRK10866 231 ADKVAK 236 (243)
T ss_pred HHHHHH
Confidence 986554
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00013 Score=67.27 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=106.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIW 253 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALe-ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~ 253 (331)
+-+|..+.+.|++.+|..+|++++. +...++..+..+|+..+ ..++...|...+++..+.+|. .|+....+|..+.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 4477888899999999999999987 57788999999998876 579999999999999999986 5667788899998
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|+++.|+..|+.++...| .+.....|+.++.++|+..|+.....
T Consensus 172 a-~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 172 A-QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred h-cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8 9999999999999999999 56677889999999999888876544
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.00 E-value=0.0001 Score=64.62 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=81.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~l 248 (331)
.+++-|.-..+.++|++|++.|+......|.. +.+...++.+++ ..+++++|...+++-|+++|.++ ++++..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 35666777788889999999999988888875 345566777765 57899999999999999988765 456677
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 020109 249 ADLIWQAHKD---------------ASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 249 A~ll~~~~Gd---------------~deAieyferALeldPdna~vl~ 281 (331)
|...+. ..+ ..+|...|++.|+..|++.++--
T Consensus 91 gL~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 91 GLSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 777777 555 77888889999999998876543
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=2.3e-05 Score=74.43 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=92.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SD----GN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP--~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d----~~ 243 (331)
..--|+.|...+++++|..+|.++....- ++ ...+...+.+ + ...++++|.++|++|+.+-- .+ +.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-Y-KKGDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-H-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 44567788899999999999999987632 22 2233344445 4 34699999999999987632 22 44
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 244 ILSLYADLIWQAH-KDASRAESYFDQAVKSAP--DD----CYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 244 vL~~lA~ll~~~~-Gd~deAieyferALeldP--dn----a~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
++..+|.++.. . +++++|+++|++|+++.- +. ..++..++.++.+.+++++|...+++...
T Consensus 116 ~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788999888 7 899999999999999843 22 35677899999999999999998886554
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.9e-05 Score=54.74 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.++..+|.+++. .|++++|+++|+++++.+|+++.+|..++
T Consensus 2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344555555555 55555555555555555555555555554
No 159
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.6e-05 Score=75.37 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=100.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.+...+++..|..+-+|+|+.||.+-.++..-|.++- ..++.++|.-.|+.|+.+.|.+.+.+..+-..|.. .+++.|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHH
Confidence 3445578999999999999999999999999998874 68999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCC-chHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYA-KFLWDAGE-DEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA-~~L~klG~-~eEa~~~~e 301 (331)
|...-..+++.-|.++..+--+| .++.-.-. .++|.+-.+
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999999999999888885 55544433 444544333
No 160
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.91 E-value=0.00021 Score=70.96 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=104.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFL-----------KEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lL-----------y~~~GdyeeAee~~erAL~ldP~d~~vL 245 (331)
|..+.++|.+++|+.-|.+.|+.+|++. ++...++.+- +-..||+..|+++....|++.|=|+..+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 3567899999999999999999999654 4444444321 1124799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...|.+|.. .|+...|+.-+.++-++.-++...++.+..+++..|+.++.-.+.+
T Consensus 193 ~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 193 QARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999988876554
No 161
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=81.26 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=101.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
|-|+-++..+.|+.|+..|-|||+++|+++.++.+-|..+ ...+++..|..-+.+||+++|....+++.-|.+... .+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~-lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAH-LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhh-eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HH
Confidence 4456667779999999999999999999999998888553 468999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++.+|...|+....+.|++.++...+..|-...-+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777666544
No 162
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.89 E-value=9.5e-05 Score=78.23 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=90.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NP------- 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALel--dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l---dP------- 239 (331)
|......+...|.+.|+.++|.+.|+++++. .|+..- +..+...+. ..|+.++|.++|+...+. .|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-FLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 3334567788888888889999999888774 343222 222222222 345555555555555432 12
Q ss_pred ------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 240 ------------------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 240 ------------------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eE 295 (331)
-+..+|..+...+.. .|+++.|+..+++++++.|++...|..+..+|.+.|++++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 133445556666666 7888888888888999999998899999999999999999
Q ss_pred HHhhhhhcccc
Q 020109 296 EEQDNEEGQHQ 306 (331)
Q Consensus 296 a~~~~e~~~~~ 306 (331)
|.+..+++..+
T Consensus 547 A~~v~~~m~~~ 557 (697)
T PLN03081 547 AAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHc
Confidence 99888766554
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=6.4e-05 Score=72.46 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=84.1
Q ss_pred ccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...++|..+.. .+++.+|..+|+......+.++..++.+|.+. ...|+|++|++.+++|+..+|+|++++.+++.
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~-l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH-LQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH-HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 35555553333 24689999999998888888999999999886 47899999999999999999999999999999
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 020109 251 LIWQAHKDA-SRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 251 ll~~~~Gd~-deAieyferALeldPdna~vl 280 (331)
+... .|+. +.+.+++.++.+.+|+.+.+.
T Consensus 244 ~~~~-~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLH-LGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHH-TT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHH-hCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9888 8887 778899999999999988664
No 164
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.87 E-value=0.00038 Score=77.91 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=58.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~l--dP~d~~vL~~lA~ll~~~ 255 (331)
+...|.+.|++++|.+.|+++.+.+. .++..|..+...+. ..|++++|.++|++..+. .|+ ...+..+...+.+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k- 661 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH- 661 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Confidence 33444455555555555555555442 23333333333322 345555555555555443 222 3344444444454
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|.++|+++++.. +.+..++..+...|.+.|+.++|...+++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555555555543 23445555555555555555555555543
No 165
>PLN03077 Protein ECB2; Provisional
Probab=97.86 E-value=0.00017 Score=77.99 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=86.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-..|.+.|..++|..+|+.+.+..+- +...+..+..++. ..|++++|++++++. .+.|+ +.+|..+-..+..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~- 669 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI- 669 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-
Confidence 3445566666777777777776644322 2344555555554 467777777777764 24454 4455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
.++.+.|+...+++++++|++...+..++.+|...|+++++.+..+++..
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 78888888888889999999999999999999999999999987765544
No 166
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.83 E-value=0.00015 Score=74.53 Aligned_cols=111 Identities=17% Similarity=0.072 Sum_probs=91.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------------------D---- 241 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---------------------d---- 241 (331)
.+..+-+++-++||+++|+.+.++..+|.= ......+|+++|++|++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 567888889999999999999998888742 235567788888887754330 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++...+|.++|+ .|+.+||++.|..+++..| ++..+++++..+|...+.|.|+...+.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566789999999 9999999999999999988 466799999999999999999987665
No 167
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00043 Score=60.77 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHc
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYADLIWQAH 256 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~----~vL~~lA~ll~~~~ 256 (331)
..+.+.++.+.|++.|.++|.+-|.++.++++-|+.+ +.+++.++|..-+++|+++.-... .++..-|.+|.. .
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~-RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQAL-RLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-L 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHH-HHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-h
Confidence 3444557889999999999999999999999999985 578999999999999998876543 345667888888 8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 020109 257 KDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 257 Gd~deAieyferALeldPd 275 (331)
|+-+.|..-|+.|-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999888877666543
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=9.4e-05 Score=69.61 Aligned_cols=122 Identities=8% Similarity=0.034 Sum_probs=97.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
+|-..|-..-|..-|.++|.++|+-|++++.++..+. ..++++.|.+.|+..+++||.+-++..+.|..++- .|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence 4455566788999999999999999999988888765 68999999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
|.+-+.+-.+.+|.++.--..+-..-. .-++++|...+.++..+
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNLKQRAEK 195 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHHHHHHHh
Confidence 999999999999999854333322222 22566676665544443
No 169
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.80 E-value=5.3e-05 Score=52.47 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.++..||.++ ...|++++|+++|+++|+.+|+|+.++..+|.
T Consensus 2 ~~~~~la~~~-~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAY-RRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4566666664 35677777777777777777777777666654
No 170
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.79 E-value=0.00059 Score=76.38 Aligned_cols=125 Identities=9% Similarity=0.007 Sum_probs=68.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~vL~~lA~l 251 (331)
..+...|.+.|++++|..+|+++....-. |...+..+...+. ..|++++|.++|++.... .|+ ..++..+...
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a 588 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Confidence 34445555556666666666655543211 2333344444433 456666666666666542 333 3344445555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 252 IWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+.+ .|++++|+++|+++.+.+ +.+..+|..+...|.+.|+.++|...++++.
T Consensus 589 y~k-~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 589 CAN-AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHH-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555 666666666666666665 3455566666666666666666666655443
No 171
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.77 E-value=0.00043 Score=73.33 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=90.1
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~ 253 (331)
....+...|.+.|++++|...|+++. +.|...|+.+...+. ..|++++|.++|++.....- -|...+..+..++.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34456778888888888888888763 346666666666644 57888888888888866432 24456666666777
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 254 QAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 254 ~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+ .+++++|.+++..+++.. +.+..++..+...|.+.|+.++|...++++.
T Consensus 337 ~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 337 R-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred h-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 7 788888888888888776 4667777778888888888888887776543
No 172
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=2.7e-05 Score=51.77 Aligned_cols=31 Identities=42% Similarity=0.624 Sum_probs=12.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227 (331)
Q Consensus 196 yekALeldP~npeal~~yA~lLy~~~GdyeeA 227 (331)
|++||+++|+|+.++++||.++. ..|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhh
Confidence 34444444444444444444432 33444443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0004 Score=65.95 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=90.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--NPGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----G 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel--dP~n----peal~~yA~lLy~~~-GdyeeAee~~erAL~ldP--~d----~ 242 (331)
+.+.+.+|.+. ++++|+.+|++|+.+ .-++ +..+..+|.++ +.. +++++|.++|++|+.+-. +. .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 45677788777 999999999999997 3333 44567788885 456 899999999999987632 22 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DC---YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd----na---~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.+ .++|++|++.|++.....-+ .. ..+...+.|++..|+...|...++
T Consensus 156 ~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 156 ECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356678999999 99999999999999986421 11 345677889999999988887776
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0002 Score=68.97 Aligned_cols=130 Identities=17% Similarity=0.097 Sum_probs=111.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----AN--PSDGNILSL 247 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeld-P~npeal~~yA~lLy~~~GdyeeAee~~erAL~----ld--P~d~~vL~~ 247 (331)
.++-|++|+.-.+.|.-....|.+.++.+ |.+|.....++.+.. +.||.+-|..||++.-+ ++ ..+..|...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35678888888999999999999999999 568888899998864 68999999999995432 22 346677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
.+.++.- .+++..|...|++++..||.++.+..+.|.|++.+|+..+|.++.+++-.+
T Consensus 258 ~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888 899999999999999999999999999999999999999999998855444
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=5.7e-05 Score=50.18 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 231 CGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 231 ~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
|++||+++|+|+.++..||.++.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 455555555555555555555555 55555554
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.00047 Score=65.99 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASY 283 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~l 283 (331)
.|+.|.-++ ..|+|..|+.-|..-|+.-|+.. .+++-||.+++. +|+|++|..+|.++++..|+. ++.++.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 555565555 57999999999999999999864 467888999999 999999999999999998844 5889999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.++.++++.++|-..+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999883
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0004 Score=66.28 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+|..|..++.+ .+..+.|..+|.+|++..+....++..+|.+-+...++.+.|...|+++++..|.+..+|..|..++
T Consensus 2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888754 4569999999999997777788999999999776357777799999999999999999999999999
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...++.+.+...+|
T Consensus 81 ~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 81 IKLNDINNARALFE 94 (280)
T ss_dssp HHTT-HHHHHHHHH
T ss_pred HHhCcHHHHHHHHH
Confidence 99999998887776
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.61 E-value=0.00061 Score=59.72 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPdna---~v 279 (331)
.+..++.-|.-.. ..|+|.+|++.|+.+...-|-.++ +...++.++++ .+++++|+..+++-+++.|.++ ++
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4556677776654 689999999999999999997654 67789999999 9999999999999999999555 78
Q ss_pred HHHHHHHHHHcCC
Q 020109 280 LASYAKFLWDAGE 292 (331)
Q Consensus 280 l~~lA~~L~klG~ 292 (331)
++..|.+++.+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888998888865
No 179
>PLN03077 Protein ECB2; Provisional
Probab=97.61 E-value=0.0012 Score=71.57 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=94.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ll~ 253 (331)
...+-..|.+.|++++|...|+.+ +.|...|+.+...+. ..|+.++|.++|++.++ ..|+...+...+ ..+.
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~ 600 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS 600 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHh
Confidence 345667888999999999999886 456777777776654 67999999999999887 456665554433 4566
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 254 QAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+ .|+.++|.++|+++.+..+ .+...|..+..+|.+.|+.+||....+++
T Consensus 601 ~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 601 R-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred h-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 6 8999999999999985532 36678899999999999999999888744
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.00016 Score=79.06 Aligned_cols=109 Identities=11% Similarity=0.032 Sum_probs=94.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
+-+|.+.++.-+|+..|+.||+.+|++...|..++.++ ...|.|.-|.+.|.+|..++|.+.++.+-.|...-. .|+|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY-~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkY 646 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAY-PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKY 646 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHH-HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhH
Confidence 34677889999999999999999999999999999995 578999999999999999999999999999998888 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+|+..+...+......--+...++.++.+.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999988888665555555555555443
No 181
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00022 Score=45.61 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
.++..+|.+++. .|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcC
Confidence 344555555555 55555555555555555554
No 182
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=63.30 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=82.3
Q ss_pred HHhCCCcHHHHHHHHHHHH--------hCCCCHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIE--------ANPGNALL----------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALe--------ldP~npea----------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v 244 (331)
+++.++|.+|..+|+.||. ..|.+++. +.||++++ ...++|-++++.+...|..+|.|..+
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~-L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCL-LKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHH-hhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4467899999999998876 36777654 56888885 47899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
++.-|.+... .=+.++|..-|.++|+++|.-..+...
T Consensus 267 ~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 267 YFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999988877 788999999999999999966655443
No 183
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.0011 Score=68.29 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=103.5
Q ss_pred ccHHHHHH-hCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 177 GSNNNYSN-NNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~-~~gd~ekA~e~yekALeldP~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
-|||.+-. ..++.+.+...|+.+|.+=|.. +.+|..||.+.- .+.+...|.+.+..||-..|.+-.+ ..|-.+
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlF-k~YIel 446 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLF-KGYIEL 446 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHH-HHHHHH
Confidence 46665543 3478899999999999998864 667888998864 5789999999999999999998766 456666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.+ .+++++...+|++-|+..|.+|.+|..+|.+-..+|+.+-|....+
T Consensus 447 Elq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 447 ELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 677 8999999999999999999999999999999999999988876654
No 184
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00033 Score=69.08 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=79.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npe----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
|+.|++.++|..|..+|.+.|..+..|+. .++|-|.+.+ ..|+|-.|+.-+.+|++++|.+..+++.=|.+++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e- 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE- 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence 56788889999999999999999776654 4456666654 46999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020109 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deAieyferALeldP 274 (331)
..++++|..+.+..++++-
T Consensus 166 Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHhhhhhhhH
Confidence 9998888888887776654
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.52 E-value=0.0024 Score=60.83 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---IL 245 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL 245 (331)
-...++|=|.-....|++++|+.+|+++....|..+. +...++..+| ..++|++|+.++++-+.+.|.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4456888888888999999999999999999998654 5667777776 679999999999999999997654 44
Q ss_pred HHHHHHHHHHc----CC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCchHHHh
Q 020109 246 SLYADLIWQAH----KD---ASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 246 ~~lA~ll~~~~----Gd---~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~~eEa~~ 298 (331)
+..+...+... .| ..+|+.-|+..|+..|+..++ -..+|++|.+.|.+.-|+.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 44444443311 22 234556666666666655442 2345666666666665554
No 186
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00068 Score=67.71 Aligned_cols=119 Identities=11% Similarity=0.022 Sum_probs=79.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC----
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANPS---- 240 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--------------~ldP~---- 240 (331)
.|.|++..|+|++|...|.-+.+.+.-+.+.+.++|.+.+ ..|.|.+|.....+|- +++..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 4678899999999999999988888778888899987754 4577777766544431 11110
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 241 --------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
-.+-...+|-+.+. .-.|++|++.|++.+.-+|+-..+...+|.||+++.-++-+-+.
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 00111123344444 45677777777777777777777777777777777666555443
No 187
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00023 Score=69.74 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=101.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH--------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC-------------------- 231 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~-------------------- 231 (331)
+...+..+|.||....+|..|..||++.-...|....+..-+|+.+|. .+.+..|....
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445577889999999999999999999999999988887777877763 34333332221
Q ss_pred ----------HHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 232 ----------GRAILANP--SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 232 ----------erAL~ldP--~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+-.++.-| +++.++...|-++++ .|++++|.+-|+.|++....++-+-++++.++++.+++..|-+
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 12223334 677788888999999 9999999999999999999999999999999999999998875
No 188
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.49 E-value=0.0022 Score=69.11 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=95.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GNI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d----~~v 244 (331)
...++..+...+++++|..++++++...+... .++..++.++. ..|++++|..++++++..... + ..+
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34567788889999999999999999655432 23455666654 689999999999999976432 1 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP--------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP--------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.+++. .|++++|+.++++++++.. ....++..++.+++..|++++|....+
T Consensus 534 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 534 LLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5677888898 9999999999999998732 123445677889999999999986665
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.43 E-value=0.0017 Score=57.07 Aligned_cols=86 Identities=24% Similarity=0.294 Sum_probs=76.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 020109 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWD 289 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn----a~vl~~lA~~L~k 289 (331)
|..+. -.|+.+.|++.|.+||.+.|.++-++.+-|..+.. .|+.++|++-+++|+++.-+. +..+.+.|.+|..
T Consensus 50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 44444 36999999999999999999999999999999999 999999999999999997644 4568889999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
+|+.+.|..|++
T Consensus 128 ~g~dd~AR~DFe 139 (175)
T KOG4555|consen 128 LGNDDAARADFE 139 (175)
T ss_pred hCchHHHHHhHH
Confidence 999999998876
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.42 E-value=0.0004 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
+++++.+|.+++ ..|++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 456777777765 5788888888888888888875
No 191
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0025 Score=65.76 Aligned_cols=96 Identities=14% Similarity=0.272 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.+-...|+.|+...+.|..+|.+|..+.. ..+.+.+-...|.++++..|+++++|...|.-.+...-+.+.|..+|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 57889999999999999999999998864 56779999999999999999999999999988888344499999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 020109 270 VKSAPDDCYVLASYAKF 286 (331)
Q Consensus 270 LeldPdna~vl~~lA~~ 286 (331)
|+.+|+++.+|..+-++
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999988876544
No 192
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.38 E-value=0.0032 Score=67.85 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=96.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--------D 241 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--------d 241 (331)
..+++..+...|++++|..++++++..... + ...+.++|.+++ ..|++++|..++++++.+... .
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 467788889999999999999999986432 1 234456777765 689999999999999886321 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-----DDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP-----dna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
...+..+|.+++. .|++++|..++.+++.... .....+..++.++...|++++|...+++
T Consensus 573 ~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 573 EFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3345577888888 8999999999999988743 1345566789999999999999866553
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.38 E-value=0.00034 Score=45.16 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
++..+|.+++. ++++++|+++|++|++++|+
T Consensus 3 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 44444555554 55555555555555555543
No 194
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.38 E-value=0.00024 Score=70.57 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
|.-++ .+|.|++|+.||.+++.++|.|+.++.+.|.+|++ .+.|..|+.-...|+.++-....+|...+..-..+|+.
T Consensus 104 GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44433 68999999999999999999999999999999999 99999999999999999998889999999999999999
Q ss_pred hHHHhhhh
Q 020109 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~e 301 (331)
.||.+|+|
T Consensus 182 ~EAKkD~E 189 (536)
T KOG4648|consen 182 MEAKKDCE 189 (536)
T ss_pred HHHHHhHH
Confidence 99998887
No 195
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.0022 Score=65.73 Aligned_cols=105 Identities=21% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----d~~vL~~lA~ll~~~~Gd~deA 262 (331)
.+.+.|...++.+.+..|+.+.+++.-|.++. ..|+.++|.++|++|+..... ....+..+++++.- +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 46689999999999999999999999999964 789999999999999853332 23346678999888 9999999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc
Q 020109 263 ESYFDQAVKSAPD-DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 263 ieyferALeldPd-na~vl~~lA~~L~klG~~ 293 (331)
.++|.++++.+.- .+...|..|.|+...++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999998874 555667779999999998
No 196
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0022 Score=63.82 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSD---GNILSLYADLIWQAHKD 258 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-dP~d---~~vL~~lA~ll~~~~Gd 258 (331)
+..+|++-+|...+++.|.-.|.+-.++..--.+++ ..|+...-...+++.+-. +|+- .++.-.||..+.. .|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hcc
Confidence 344567788889999999999999887765444433 468888888999999977 7776 6777889999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
|++|++..++|++++|.++++.-..++++.-.++..|+.+
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 9999999999999999999999999999999999888864
No 197
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.33 E-value=0.0004 Score=68.24 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=65.0
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.|.|.-..+.|+.++|...|+.|+.++|.++.++..++.|. +..++.-+|.+||-+|+.++|.|-+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 45666677889999999999999999999999999999996 467999999999999999999999998876543
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.28 E-value=0.00052 Score=44.31 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
.+|+++|.++. ..+++++|+++|++||+++|+|
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 45666776653 5677777777777777777753
No 199
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.22 E-value=0.0005 Score=64.79 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|...|-+.-|..-|.+++.+.|+-|.++..+|..+.. .|+|+.|.+.|+-.++++|..-+++.+.|..++--|+++-|-
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 4456777889999999999999999999999999999 999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
.|..
T Consensus 154 ~d~~ 157 (297)
T COG4785 154 DDLL 157 (297)
T ss_pred HHHH
Confidence 7775
No 200
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0042 Score=64.07 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=103.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
-||.|-..++++..|...|++||..|-.+--.|..||.+- .......-|...+++|+.+=|.--..++-|...-.. .|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence 3788999999999999999999999999999999999985 356788999999999999999988888888777666 88
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..-|...|++=++..| +..+|..+..+-.+-.+.+-|..+.+
T Consensus 156 Ni~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYE 198 (677)
T ss_pred ccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999888888 45677777788777777777776665
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.002 Score=60.23 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=75.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 220 VRGDFAKAEELCGRAILANPSDGN-----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~-----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
..|+|++|..-|..||...|.-+. .+.+-|.++++ ++..+.|++-..+||+++|.+..++...|.+|-+..+++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 579999999999999999997543 34556788888 999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccc
Q 020109 295 EEEQDNEEGQH 305 (331)
Q Consensus 295 Ea~~~~e~~~~ 305 (331)
+|..|++.+..
T Consensus 186 ealeDyKki~E 196 (271)
T KOG4234|consen 186 EALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHH
Confidence 99998885443
No 202
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.001 Score=63.26 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=78.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
....|..|+.+|-+||.++|..+.++.+-|.++++ ..+++.+..--.+|++++|+....++.++.++.....+.+++..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 35688999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hhhc
Q 020109 300 NEEG 303 (331)
Q Consensus 300 ~e~~ 303 (331)
+..-
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 8733
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.014 Score=49.36 Aligned_cols=105 Identities=14% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....++.+.+...+++++.+-.++...-... ..........++.. ...++..++..+.. .|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~-~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLE-AGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh-ccCHHHH
Confidence 3456677888899999888755432211000 00111111222222 11233344444444 5555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++++++..+|.+-.++..+..+|...|+..+|...++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 555555555555555555555555555555555554433
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.012 Score=54.57 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=99.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~-ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
....++=|.+.+..-..+.+..-|.+..- +.+|..+. ..|++.+|+..|++++. +.-+|+..+..+|...+. .+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr-~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQNR-YRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHHH-HHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccH
Confidence 34445556677777777888888876654 45777765 46999999999999985 556899999999999999 9999
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 SRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..|...++...+.+| ..++....+++.|...|++++|+..+|
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe 184 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFE 184 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHH
Confidence 999999999999998 677889999999999999999887665
No 205
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.05 E-value=0.002 Score=58.78 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAH----------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 224 yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~----------Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++.|.+.++.+...||.|++.|...|.++.. . .-+++|+.-|++||+++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999988866 4 335678888999999999999999999999998875
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0025 Score=62.61 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=97.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
+.+..+|+.|+.++.--.+.+|.+-..+..+|.++| ..+++..|..||++.-.+.|....+...+|.-+++ .+.+..|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHH
Confidence 366789999999999999999999999999999988 56899999999999999999999999999998888 8888888
Q ss_pred HHHHHHH----------HH--------------------hCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQA----------VK--------------------SAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferA----------Le--------------------ldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+....+. ++ --| +++++..+.|.++++.|++++|.+-.+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6554432 22 123 566778888888999999988875544
No 207
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.98 E-value=0.0023 Score=63.11 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=62.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+|+.++|..+|+-|++++|.++.++..+|.+... .++.-+|..+|-+|+.++|.+..++.+.++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 58999999999999999999999999999999998 89999999999999999999999888776543
No 208
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.01 Score=62.37 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=88.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
--|+|.++.+..++|..+++ -.++.+..++-..|+++| ..++|++|...|+..++.+-++.+.......+...
T Consensus 84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--- 156 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--- 156 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---
Confidence 35778888899999999988 567777777788899988 47999999999999999888888876655544333
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.-.+. +.+.+...|+ ..+.+|+.|.++...|+|.+|++.++
T Consensus 157 a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 157 AALQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111111 5666777775 66789999999999999999997654
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.012 Score=56.89 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=96.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK---EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy---~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
..++.+..+++-|+...+++.+.|.+- .+..||..+- .-...+..|.-+|+..-...|-.+..+...|.+.+. +
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~ 220 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-L 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-h
Confidence 346667788899999999998888653 3344554321 112468899999999999888899999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
+++++|+..++.|+..++.++.++.++..+-..+|...+....
T Consensus 221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999999999999999999776643
No 210
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.89 E-value=0.0078 Score=65.50 Aligned_cols=109 Identities=13% Similarity=0.020 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAiey 265 (331)
.+++.+|.....+.++..|+.+.+...-|..+. ..|..++|..+++..-..-++|-..+..+-.+|.+ .+++++|...
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence 468899999999999999999888888888875 57999999999998888888999999999999999 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 266 FDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 266 ferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+++++.+|. -..++.+=.+|.+.+.|.+.-
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 888888888888888775543
No 211
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.87 E-value=0.028 Score=56.53 Aligned_cols=115 Identities=16% Similarity=0.040 Sum_probs=94.0
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~de 261 (331)
.-.|+|.+|+....++-+..+. |...+..| .. ....||+++|..|..+|-+..++ ...+....+.++.. .+|+..
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~A-A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~a 171 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEA-AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPA 171 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHH-HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchh
Confidence 3458999999999886555554 44444444 55 45789999999999999998544 45577788999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..-++++++..|.++.++.-...+|.+.|++.+....+.
T Consensus 172 A~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 172 ARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999988875444
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.83 E-value=0.0023 Score=41.05 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.++.. .|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 44555555555 5555555555555555555
No 213
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.70 E-value=0.038 Score=52.46 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=92.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------- 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~----npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----------- 240 (331)
.-.+++...+.|.++.|..++.++...++. .+.+...+|.+++ ..|+..+|...++..+.....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 457889999999999999999999987632 5778888999998 689999999999888871111
Q ss_pred -----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 241 -----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 241 -----------------------d~~vL~~lA~ll~~~~------Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.+.++..+|..... . ++.++++.+|.+|++++|....+|+.+|.++.+.=
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 12334455555555 5 88999999999999999999999999999988774
Q ss_pred Cc
Q 020109 292 ED 293 (331)
Q Consensus 292 ~~ 293 (331)
+.
T Consensus 307 ~~ 308 (352)
T PF02259_consen 307 ES 308 (352)
T ss_pred Hh
Confidence 43
No 214
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.011 Score=56.74 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAI--------LANPS----------DGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL--------~ldP~----------d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
.-|.-+| ..++|.+|...|+.|| +..|. +...+.+|+.+++. .++|-++++.....|+..
T Consensus 183 q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 183 QEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILRHH 260 (329)
T ss_pred Hhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHhcC
Confidence 3344445 4689999999998886 23444 34456789999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 274 PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 274 Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.|..+++..|.++....+.+||..|+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~ 288 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQ 288 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999999999999999999999998875
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.64 E-value=0.0066 Score=63.93 Aligned_cols=111 Identities=20% Similarity=0.061 Sum_probs=92.0
Q ss_pred cccHHH-HHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNN-YSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~-~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.|.|- ++..+|+-..|.+|++.|+...|.... -+.++|.++- .-+-...|-.++.++|.++-..|..++.+|..++
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL 687 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence 334443 445678889999999999999997544 4678898864 4567788999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
. ..+.+.|++.|.+|++++|+++.....+-.+-.
T Consensus 688 ~-l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 688 A-LKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred H-HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8 999999999999999999999987766654443
No 216
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.025 Score=54.70 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR-AESYF 266 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de-Aieyf 266 (331)
.+..|-.+|+.+-+.-|-++..+.+.|.+. ...++|++|+..++.||..++++|+++.++-.+... .|.-.+ -..++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~-l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCH-LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHH-HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 578999999999998888899999999886 468999999999999999999999999999988888 665544 56888
Q ss_pred HHHHHhCCCCHHH
Q 020109 267 DQAVKSAPDDCYV 279 (331)
Q Consensus 267 erALeldPdna~v 279 (331)
.|.....|+.+.+
T Consensus 266 ~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 266 SQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCCcchHH
Confidence 9999999988865
No 217
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.59 E-value=0.024 Score=64.38 Aligned_cols=107 Identities=12% Similarity=0.214 Sum_probs=94.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...-||.++..+++-+.|...+.+||+--|. +.++....|++-| ..||.+++..+|+-.+...|.-.++|..|.+.-
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 3456899999999999999999999999998 7889999999987 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASY 283 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pdna~vl~~l 283 (331)
++ .++.+.+..+|+|++.+. |......+..
T Consensus 1645 ik-~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1645 IK-HGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred Hc-cCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 99 999999999999999986 4444444433
No 218
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.52 E-value=0.0011 Score=65.68 Aligned_cols=91 Identities=20% Similarity=0.095 Sum_probs=78.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....|.++.|++.|..||.++|..+.++..-|.++. ..+....|+.-|..|+.++|+-+.-+-.-+.+... +|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHH
Confidence 345578899999999999999999999999998854 57899999999999999999987766666666666 8999999
Q ss_pred HHHHHHHHHhCCC
Q 020109 263 ESYFDQAVKSAPD 275 (331)
Q Consensus 263 ieyferALeldPd 275 (331)
..+|..|.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999999863
No 219
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.019 Score=60.42 Aligned_cols=112 Identities=12% Similarity=-0.029 Sum_probs=83.2
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
.+.++|++|.....+.|...|+++.++..--.++ .....|++|.++.++-....-.+... +..|.+.++ .+..++|+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvVal-Iq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yr-lnk~Deal 99 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVAL-IQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYR-LNKLDEAL 99 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhh-hhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHH-cccHHHHH
Confidence 3457899999999999999999888765432222 24578888885444433322223222 577888999 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++ -+++.+..++.-.|.+++++++|+++-.+++
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~ 134 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQ 134 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9988 5666677788888999999999999998776
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.036 Score=54.11 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=80.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA--DLIWQAHKDA 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA--~ll~~~~Gd~ 259 (331)
-+...+++..|...|..++..+|++.++...||.++. ..|+.+.|...+...=....++.... .-+ .++.+ ....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~q-aa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQ-AAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHH-HhcC
Confidence 4556788999999999999999999999999998864 67888888887776433333333222 222 22222 2222
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
.+ ..-+++.+..+|+|....+.+|..|...|+.++|..-
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 2346777888899999999999999999998888743
No 221
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.42 E-value=0.0064 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
.+++.+|.++. ..|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 45666676643 567777777777777777774
No 222
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.40 E-value=0.052 Score=57.89 Aligned_cols=124 Identities=21% Similarity=0.190 Sum_probs=105.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--------- 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--------- 241 (331)
+.--||++|...++.+.|...|++|.+.+=.. +.+|..+|..- ....+++.|.++.++|... |.+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE-lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~ 466 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME-LRHENFEAALKLMRRATHV-PTNPELEYYDNS 466 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCC
Confidence 34568999999999999999999999986543 56778888763 3568899999999999753 333
Q ss_pred ----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 ----------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ----------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+|..|+++... .|=++.....|++.+.+.--.+.+..+||.+|.....++++.+.+|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4568888998887 9999999999999999999999999999999999999999999887
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.013 Score=59.02 Aligned_cols=123 Identities=17% Similarity=0.027 Sum_probs=96.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS---------- 240 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~---------- 240 (331)
..+++...-.+.++++.++|++|+++..++.+ ++..++.++. ..+|+++|..+..+|..+-.+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34677777788999999999999998554322 4567787765 579999999999999876543
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSA------PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeld------Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+++.+|..+.. +|+.-.|.++.+.|.++. |-.+..+..+|++|...|+.+.|...+|
T Consensus 205 r~~~lyhmaValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 205 RAMSLYHMAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 23456778888888 999999999999998874 2344567788999999999888776555
No 224
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.39 E-value=0.098 Score=51.01 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA--HKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~--~Gd~deAieyf 266 (331)
.+.-+.+|++||+.||++...+..|-.+.. ..-+-++..+-+++++..+|+++..+..|-...... .-.+......|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 478899999999999999999998888754 456888889999999999999999999887765441 34677888888
Q ss_pred HHHHHhCC------------------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 267 DQAVKSAP------------------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 267 erALeldP------------------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++++.-. .-.++...++.++++.|..+.|...++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 88887632 112567788999999999999998776
No 225
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.34 E-value=0.08 Score=49.68 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Q 020109 171 GGSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILA 237 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~n-peal~~yA~lLy~~~G--------dyeeAee~~erAL~l 237 (331)
|+.....+||..|.. ..++.+|..+|++|.+..-.. ......++.++. .+ +..+|..+|.+|-..
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHh
Confidence 345556778888777 458899999999999885544 334566666643 23 344899999999887
Q ss_pred CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 238 NPSDGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
. ++.+...++.++..- ..++.+|..+|.+|.+... ...++.++ +++..|
T Consensus 185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 6 888888899887652 2589999999999999987 77888888 666666
No 226
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.34 E-value=0.08 Score=51.63 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=81.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~G-----------dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
..-|++.++.+|.|...|..|+.+.-.... -.+..+.+|++||+.+|++...+..|-.+..+ .-+-++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 346789999999999999999877432211 13567889999999999999999999998888 889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~k 289 (331)
..+-+++++..+|++..+|..|-.+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999998887776
No 227
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.26 E-value=0.0031 Score=64.58 Aligned_cols=81 Identities=17% Similarity=0.040 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..++++.|...|-+||.++|+++.++..-|.++++ .+++-.|+.=+.+|++++|.....|+..|.+.+..+++-+|..+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999877
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 95 l~ 96 (476)
T KOG0376|consen 95 LE 96 (476)
T ss_pred HH
Confidence 76
No 228
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.26 E-value=0.0076 Score=59.46 Aligned_cols=92 Identities=7% Similarity=0.137 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHH
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY-ADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l-A~ll~~~~Gd~deAieyferALe 271 (331)
.-.|.++-...|+|+.+|..|+... ...+-|.+-...|.++++..|.|.+.|... +.-++. .++++.+...|.++++
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~-~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-~ani~s~Ra~f~~glR 170 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYV-IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-IANIESSRAMFLKGLR 170 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-hccHHHHHHHHHhhhc
Confidence 3445677778999999999999775 467899999999999999999999999874 444555 8999999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q 020109 272 SAPDDCYVLASYAKF 286 (331)
Q Consensus 272 ldPdna~vl~~lA~~ 286 (331)
.+|+++.+|+.+-++
T Consensus 171 ~N~~~p~iw~eyfr~ 185 (435)
T COG5191 171 MNSRSPRIWIEYFRM 185 (435)
T ss_pred cCCCCchHHHHHHHH
Confidence 999999998877543
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.032 Score=54.23 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=80.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA----NPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel----dP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
.+..-+++.-.+-|+.+.|..||++.-+. +.. +-.+.-+.|.+ +...+++..|...|.+.+..||.++.+...
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i-~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL-HLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh-eecccchHHHHHHHhhccccCCCchhhhch
Confidence 34455667777889999999999955443 332 22233344444 456789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
.|.++.- .|+...|++.++++++..|...
T Consensus 292 KALcllY-lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 292 KALCLLY-LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhccCCccc
Confidence 9999998 9999999999999999999543
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.034 Score=55.56 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=91.1
Q ss_pred HHHhCCCcHHHHHHHHHHHHh-CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 182 YSNNNHGSSSTDAYYEKMIEA-NPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALel-dP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
.++-+|+.+.-+..++|.|-. ||+-|.+- ..||-.+ +-.|-|++|++..++|+++||.|..+.-..|.++.. .+
T Consensus 146 a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL-~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~ 223 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL-EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NG 223 (491)
T ss_pred HHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH-HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cc
Confidence 455567778888899999988 88875543 4566555 357999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++.++..+--..-- .. -.|-..|.|+..-++++.|.+++.
T Consensus 224 r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 224 RHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998776443322 22 234466888888899998886554
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.12 E-value=0.061 Score=51.46 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPdna---~vl 280 (331)
+..|++-|.... ..|+|++|..+|+++....|..++ ++..++.++++ .+++++|+.++++-+++.|.++ +++
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 445555565543 679999999999999999998765 67788999999 9999999999999999998444 566
Q ss_pred HHHHHHHHHc
Q 020109 281 ASYAKFLWDA 290 (331)
Q Consensus 281 ~~lA~~L~kl 290 (331)
+-.|.++...
T Consensus 112 YlkgLs~~~~ 121 (254)
T COG4105 112 YLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHhcc
Confidence 6777775544
No 232
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.12 E-value=0.04 Score=46.52 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRG----------DFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~G----------dyeeAee~~erAL~ldP~d~~vL 245 (331)
.|.-++.+|++-+|.+..+.++..++++. .++..-|.+++.+.. -.--|.++|.+++.+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999999876 344445555443221 11236777777777777776666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+.+|.-+-- ...|+++...-+|+|.+
T Consensus 82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 666665544 55566666666666654
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.0076 Score=61.40 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=73.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH--H
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGN--I 244 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~------npeal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~--v 244 (331)
+|+++.|.-.|+|+.|+.+-+.-|++... .-.++.++|.++- ..|+++.|.++|++++.+ ...-.+ .
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 35556666667777777777666665332 1335566666643 467788888887776533 222222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~ 297 (331)
-+.+|..|.- ..++++||+|+.+-+++.- ....++..+|..+-.+|+.+.|-
T Consensus 278 cYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 278 CYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 3456677776 7778888888777666532 33455666777777777766665
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.09 E-value=0.056 Score=54.37 Aligned_cols=125 Identities=16% Similarity=0.059 Sum_probs=90.0
Q ss_pred ccccHHHHHHh---CCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCH
Q 020109 175 FSGSNNNYSNN---NHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 175 ~~~N~A~~y~~---~gd~ekA~e~yekALe-ldP~npeal~~yA~lLy~~~--------GdyeeAee~~erAL~ldP~d~ 242 (331)
....||-.+.. .|+.++|+..+..++. ..+.+++.+..+|.++.... ...++|+..|.++..++| +.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~ 259 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DY 259 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cc
Confidence 45567888888 7899999999999554 56678999999998854221 246889999999999995 55
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAV--------KS----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferAL--------el----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.-.++|.++.. .|+..+....+.+.. +. .-.+.+.+..++.+..-.++++++..-.+
T Consensus 260 Y~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 260 YSGINAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred cchHHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555677777776 555333332222211 11 22677888899999999999999987666
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.082 Score=50.84 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=82.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG-NILS 246 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal------~~yA~lLy~~~GdyeeAee~~erAL~ld-----P~d~-~vL~ 246 (331)
-+..|...+++++|+.++++|++...+|...+ -..|.++ +....+.++..+|++|..+- |+-+ .++-
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLa-ke~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLA-KELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 45677888999999999999997655553322 2223333 45678999999999998653 2222 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~ 298 (331)
..|.+ .. .-+.++|+.+|+|++.+--.+. ..+...+++|.+..+++||..
T Consensus 116 KAak~-le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 116 KAAKA-LE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHH-hh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 34443 45 6999999999999999855332 345677888999999888873
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.06 E-value=0.012 Score=36.98 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
++..+|.++.+ .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 45556666666 66666666666666666664
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.01 E-value=0.084 Score=53.14 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=96.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKE--VRGDFAKAEELCGR-AILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel----dP~npeal~~yA~lLy~--~~GdyeeAee~~er-AL~ldP~d~~vL~~l 248 (331)
.-|+=..|....+|+.-+...+.+-.+ -++.+.+.+.||.++.+ ..|+.++|.+.+.. .....+.+++.+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 346666788889999999998876666 45677788889988753 16899999999999 567777899999999
Q ss_pred HHHH---HHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLI---WQA-----HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll---~~~-----~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.++ |.. ....++|+.+|.++.+++| +.+.-.+++.++...|...+...+.+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHH
Confidence 9877 221 2357899999999999996 66777788888888887655554444
No 238
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.14 Score=51.59 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---H---------------------------HHHHHHHHHc
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---G---------------------------NYARFLKEVR 221 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal---~---------------------------~yA~lLy~~~ 221 (331)
++.+.-|+|-+++=.|.|.+|+....+| |++|.-. + .+|.+.| +.
T Consensus 90 ~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhY-mR 164 (557)
T KOG3785|consen 90 PAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHY-MR 164 (557)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHH-HH
Confidence 3346679999999999999998876653 4443321 1 2333444 34
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.|++|+..|.+.+.-+|+.......+|.++++ ..-++-+.+.++-.++..|+.+.+..-.+..++++=+-.-|+.+.+
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 578999999999999999999999999999999 9999999999999999999999988888888777744333444444
Q ss_pred hcccc
Q 020109 302 EGQHQ 306 (331)
Q Consensus 302 ~~~~~ 306 (331)
+++.+
T Consensus 244 ~ladN 248 (557)
T KOG3785|consen 244 ELADN 248 (557)
T ss_pred HHHhc
Confidence 44433
No 239
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.88 E-value=0.06 Score=43.37 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+..++++++.+|+|..+.+.+|..+. ..|++++|.+.+-.+++.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcc
Confidence 34455555555555555555555543 455555555555555555544
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.87 E-value=0.048 Score=46.01 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..++..++..+. ..|++++|..++++++.++|.|-.++..+-.++.. .|+..+|+.+|+++.+.
T Consensus 62 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566666654 68999999999999999999999999999999999 99999999999988765
No 241
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.17 Score=49.01 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS-RAE 263 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d-eAi 263 (331)
+...-.+|...-+.+|.+||.|.-+|.---.++..+..+..+-.+++.+.++.+|.|..++-.--.+.-. .++.. +-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchH
Confidence 3345578888888888889988877765556666667789999999999999999999999988888877 88988 889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.+.++..+..+.-+|...-.++..-+.++.+-
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998887765
No 242
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.085 Score=50.42 Aligned_cols=129 Identities=14% Similarity=0.014 Sum_probs=88.9
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCC----C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANP----G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS------ 246 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP----~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~------ 246 (331)
--|+.|.-.+++..|-..|.+|-...- . +....+.-|.-.| ...+.++|..++++||++-.+-..+..
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 345566666777778777777765422 1 1222222222224 467999999999999999887655544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHhhhhhccccc
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQDNEEGQHQT 307 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~~~e~~~~~~ 307 (331)
.+|.+|..-..++++|+.+|++|-+-....- ..+...+..-..+++|.+|+.+.++..+..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788887634899999999999988755222 235566777788899999999988665543
No 243
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.80 E-value=0.11 Score=57.03 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=87.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
|..+.+.|..++|..+++..-...++|...+.-+-.+ |+..+++++|..+|++|++.+|+ -+.+..+-.++.+ .+.|
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~-y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~y 126 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV-YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSY 126 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHH
Confidence 4566788999999988877666777777777666666 56789999999999999999999 8888888888888 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCchH
Q 020109 260 SRAESYFDQAVKSAPDDCYV-LASYAKFLWDAGEDEE 295 (331)
Q Consensus 260 deAieyferALeldPdna~v-l~~lA~~L~klG~~eE 295 (331)
.+-.+.--+..+..|.+++. |.....++...-.+++
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 98888888888899977754 4444444444433433
No 244
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.056 Score=59.09 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekA----------LeldP~----------npeal~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
.+|||.++..+++.+.|++||+|+ |..+|. ++..|.-+|+++ +..|+.+.|+.+|..|-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhh
Confidence 689999999999999999999873 555654 345566677776 57899888888887653
Q ss_pred ---------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 236 ---------------------LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 236 ---------------------~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.....|..+-+.+|.-|.. .|++.+|+.+|.||...
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 4445677788889998888 99999999999987654
No 245
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.75 E-value=0.07 Score=54.63 Aligned_cols=120 Identities=7% Similarity=0.002 Sum_probs=89.3
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh----CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNAL--LLGNYARFLKEVRGDFAKAEELCGRAILANPS------D 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel----dP~npe--al~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d 241 (331)
....|+|+++.-.++++.|+++|.+++.+ -....+ -.+.+|..++ ..+++++|+.|+.+-|++... .
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34789999999999999999999987664 333333 3466777766 578999999999997765442 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCchH
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--D----DCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP--d----na~vl~~lA~~L~klG~~eE 295 (331)
..+...+|..+-. .|..++|+.+.++.+++.- . ..-+..++....+.+|..+-
T Consensus 315 ~RacwSLgna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 315 LRACWSLGNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 4456677887777 9999999999999888732 1 23356677777777776543
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.74 E-value=0.017 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.+++. .+++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence 34455555555 5555555555555555555
No 247
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.73 E-value=0.18 Score=52.40 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=70.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
..+-.+|..|..+.+.+.+-...|.++|..+|++|..|..-|.-.++..-+.+.|..+|.++|..+|+.+..+..|-.+-
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 45677899999999999999999999999999999999988877777666799999999999999999999988775443
No 248
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.69 E-value=0.057 Score=39.65 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++.+|..++ ..|+|.+|.++++++|+.+|+|..+....
T Consensus 4 lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 334444433 34555555555555555555555554433
No 249
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.67 E-value=0.004 Score=61.75 Aligned_cols=81 Identities=25% Similarity=0.167 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..|++++|++.|-+||+++|..+..+...+.++++ .++...|+.-+..|++++|+.+.-|-..+....-+|++++|..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 47899999999999999999999999999999999 99999999999999999999998888888888888999999876
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 205 l~ 206 (377)
T KOG1308|consen 205 LA 206 (377)
T ss_pred HH
Confidence 65
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.56 E-value=0.025 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+..+|.++.+ .|++++|+++|++++
T Consensus 2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQ-QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4556666666 666666666666644
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.56 E-value=0.061 Score=39.51 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+.++.+|..+++ .|+|++|..+.+++|+++|+|..+..-...+
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888 8888888888888888888888766544433
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.55 E-value=0.2 Score=44.90 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=85.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
...-...++.+.+...+..+-.+.|+.+++-..-|.++ ...|+|.+|+.+++.+....|..+.+..++|++++. .+|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~-i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~ 94 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH-IVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDP 94 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCCh
Confidence 34455667889999999998889999999988888775 478999999999999999999999999999999988 7774
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
. =..|-+++++..+ ++.+. .+...+....+...|..
T Consensus 95 ~-Wr~~A~evle~~~-d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 S-WRRYADEVLESGA-DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred H-HHHHHHHHHhcCC-ChHHH-HHHHHHHHhccccchhh
Confidence 3 3444556666665 44443 34444455545544443
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.51 E-value=0.2 Score=52.14 Aligned_cols=104 Identities=15% Similarity=0.031 Sum_probs=79.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~l-dP~d~~vL~~lA~l 251 (331)
....+|.++.+.|+.++|++.|+.+++.+|. +-.+..++...+. ..+.|.++...+.+--.+ -|+.+...+..|.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4567999999999999999999999999886 4556777877764 579999999998885332 25567777777776
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhCCCCHHH
Q 020109 252 IWQAHKDA---------------SRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 252 l~~~~Gd~---------------deAieyferALeldPdna~v 279 (331)
.+++.+|- ..|.+.+.||++.+|..+..
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 66544441 34678999999999977754
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.49 E-value=1.2 Score=40.03 Aligned_cols=73 Identities=22% Similarity=0.120 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
..++.++++.+++..-.+.|+.+.+...-|++++. .|++.+|+.+|+.+.+..|..+++-.-++.||..+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 46799999999999999999999999999999999 99999999999999999999999999999999999884
No 255
>PRK10941 hypothetical protein; Provisional
Probab=95.47 E-value=0.097 Score=50.34 Aligned_cols=68 Identities=15% Similarity=-0.015 Sum_probs=60.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+...+++++|..+.++++.++|++++-+...|.++.+ .+.+..|..-++..|+.-|+++.+..-...+
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4568999999999999999999999999999999999 9999999999999999999888775544433
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.46 E-value=0.015 Score=38.58 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=15.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMI 200 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekAL 200 (331)
.|+|.+|...|++++|+.+|+++|
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777777777777777777744
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.029 Score=58.21 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=91.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEK-MIEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------A 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yek-ALeldP~--------npeal~~yA~lLy~~~GdyeeAee~~erAL~---------l 237 (331)
+..=..+++.+|++.+|.+.+.. -|...|+ ...+|++++.++| ..+.|.-+..+|.+|++ +
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 33445677888999988887754 3445565 3456788998887 46999999999999996 1
Q ss_pred CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 238 NP---------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 238 dP---------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
.| ...+++++.|..+.. .|+.-.|.+.|.+|++..-.++.+|..+|.|..-..+
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 11 356788899999999 9999999999999999999999999999988776543
No 258
>PRK10941 hypothetical protein; Provisional
Probab=95.35 E-value=0.21 Score=48.11 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=44.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
+.|+=..|.+.+++++|..+.+.++..+|+++.-+..-|.+++ ..+.+..|..-++.-|+..|++|.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4555556666666666666666666666666666665565543 4566666666666666666666665443
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.14 Score=48.98 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSLY 248 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~vL~~l 248 (331)
++|.+ .+.++|..|++++|++...-.. ....+|.++-....++++|+.+|++|-..-..+- ..+.-.
T Consensus 82 ~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 82 NCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 34444 4788899999999988655333 3336677743333789999999999975443221 233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYV-------LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~v-------l~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+.-+ .++|.+|+..|++.....-++... ++..+.|++-..+.--+...+|
T Consensus 161 A~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 161 AQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 666666 899999999999999988777644 4455777776555444443343
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.31 E-value=0.25 Score=50.85 Aligned_cols=113 Identities=13% Similarity=-0.026 Sum_probs=86.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLK---------E--VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy---------~--~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+|.+.+...+.++.+ .++--..+..+..+.| . ...+.+.|+++++...+.-|+.+..+...|.++..
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 567899999999877 3332112222221111 1 13467889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldP----dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|+.++|++.|++++.... -....++.++.++.-+.++++|.....
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 9999999999999986433 233567889999999999999997665
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.15 Score=47.32 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHH
Q 020109 191 STDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 191 kA~e~yekALeldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAie 264 (331)
+.+...++.+..++.+..+- ..+|...+ ..+++++|+..++.++..--+. ..+..++|.++++ .+++|+|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v-e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEV-EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHH
Confidence 66666777777776654432 23455554 3577777777777776432221 1233456777777 777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 265 YFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 265 yferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++...... -.+.+....|+++...|+.++|..-++
T Consensus 148 ~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 148 TLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 666543321 123344566777777777777776554
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.15 E-value=0.19 Score=40.44 Aligned_cols=73 Identities=18% Similarity=0.082 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 227 Aee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
...-+++++..+|+|..+.+.+|..+.. .|++++|++.+-.+++.+++ +..+.-.+-.++.-+|..+.-....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 3567889999999999999999999999 99999999999999999984 4677777777888888765544443
No 263
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.10 E-value=0.068 Score=56.01 Aligned_cols=88 Identities=27% Similarity=0.161 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~--~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
...|+..|.++++.-|....++.++|.++... .++.-.|+.-+..|+.+||....+++.++.++.+ .+++.+|+...
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~~ 468 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhhH
Confidence 45789999999999999999999998775422 3577789999999999999999999999999999 99999999998
Q ss_pred HHHHHhCCCCH
Q 020109 267 DQAVKSAPDDC 277 (331)
Q Consensus 267 erALeldPdna 277 (331)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 88888888544
No 264
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.09 E-value=0.25 Score=52.86 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=92.8
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~~vL~~lA~ll~~~ 255 (331)
=|+.+.+.-|=++..++.|.+.|.+.=-.|-...|||.+|- -..-+++|.+.|++-|.+.+ +-.+.|..|-..+.+.
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 47778888888999999999999999889999999999974 45667889999999887764 5556666665444331
Q ss_pred --cCCHHHHHHHHHHHHHhCC-CCH-HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 --HKDASRAESYFDQAVKSAP-DDC-YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 --~Gd~deAieyferALeldP-dna-~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
....++|..+|+|||+.-| ..+ .++..||.+--+-|--..|..+++
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4688999999999999877 333 345566777666666666666665
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.05 E-value=0.15 Score=53.46 Aligned_cols=115 Identities=19% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCcccccHHHHHHhC-----CCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNN-----HGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAIL 236 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~-----gd~ekA~e~yekALe-----ldP~npeal~~yA~lLy~~---~G-dyeeAee~~erAL~ 236 (331)
|+......++.+|..- .|.++|+.+|+.|.. ..-.++.+.+.+|.++... .. |+..|..+|.+|-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 5666666677776654 567888888888876 1122555666777765421 12 66778888887766
Q ss_pred hCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 237 ANPSDGNILSLYADLIWQAH--KDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~--Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.. ++.....+|.++..-. .++.+|.+||..|.+.- +..+.+.++.||..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 64 5666666777666512 34667777777777653 44455566666554
No 266
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.00 E-value=0.26 Score=45.76 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CHHHHH
Q 020109 187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGDF-------AKAEELCGRAILANPS------DGNILS 246 (331)
Q Consensus 187 gd~ekA~e~yekALel----dP~n---peal~~yA~lLy~~~Gdy-------eeAee~~erAL~ldP~------d~~vL~ 246 (331)
..+++|++.|.-||.. .... +..+..+|-+ |+..++. .+|.++|++|++.... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWl-yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWL-YRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4678888888877663 2222 3344556666 3456663 4478888888766543 356778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC-YVLASYAKFLWD 289 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna-~vl~~lA~~L~k 289 (331)
++|.+.++ .|++++|..+|.+++...-.+. ..+...|+=+|+
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 89999999 9999999999999998855333 455566655554
No 267
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.29 Score=51.69 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=87.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l------A~ll 252 (331)
+...+...+....+...+..+|..||.++....+++..+-.......-+....+.|....|+|..++..+ +.++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 3444455567778899999999999999999999998875555556667777778999999999998877 6665
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
-. .++..++..++++++.+.|.++.+...+...
T Consensus 153 ~~-l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 153 KL-LGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HH-hccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 8999999999999999999998877666555
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.81 E-value=0.057 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
++..+|.++. ..+++++|..+|+++++++|.
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 4455565543 356666666666666666654
No 269
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.70 E-value=0.27 Score=54.04 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRA----------ILANP----------SDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erA----------L~ldP----------~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
.+++||..+ +..+|.+.|++||+++ |..+| .|+..|.-.|..+.. .|+.+.|+.+|..
T Consensus 860 Tyy~yA~~L-ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYL-EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHH-HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHHH
Confidence 467888886 4789999999999975 34444 344445555676666 8999999999986
Q ss_pred HH---------------------HhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 269 AV---------------------KSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 269 AL---------------------eldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
|- .....|-.+-|.+|+.|...|+..+|..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 53 2234555677788888888888888774
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.59 E-value=0.85 Score=43.37 Aligned_cols=119 Identities=14% Similarity=0.049 Sum_probs=83.5
Q ss_pred hCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH------HcC-CHHHHHHHHHHHHHh----CC---C-------CH
Q 020109 185 NNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKE------VRG-DFAKAEELCGRAILA----NP---S-------DG 242 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeld-P~npeal~~yA~lLy~------~~G-dyeeAee~~erAL~l----dP---~-------d~ 242 (331)
++|+++.|..+|.|+-... .-+|.....++.++|. ..+ +++.|..++++|+.+ .. . ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5689999999999988766 4455544444444331 357 999999999999877 22 2 12
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 243 NILSLYADLIWQAHKD---ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd---~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
.++..++.++.. .+. +++|..+++.+-.-.|+.+.++.-.-.++.+.++.++.+.++..+-
T Consensus 85 ~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 85 SILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 356677777776 544 4567777778877789888888666677777788888887776443
No 271
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.51 E-value=0.085 Score=32.99 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+++.+|.++. ..|++++|.++|++++...|+
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 4566666654 457777777777777777665
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.45 E-value=0.13 Score=51.90 Aligned_cols=127 Identities=16% Similarity=-0.010 Sum_probs=95.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~v 244 (331)
..|+++-+++--++.+++.|....+.+.-..+ .+...++..+. -.+.++++.++|++|+.+.-++. .+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 56888888888889999999888887643333 12233444432 45789999999999987765433 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP----------DDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP----------dna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
...++.++-+ .+|+++|.-|..+|.++-- ..+..++.++..|..+|+..+|.+-++|-+
T Consensus 165 cv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 165 CVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred hhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 6788999888 9999999999999998843 123567888999999999988887776543
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.31 E-value=0.71 Score=48.45 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=84.2
Q ss_pred CCCcccccHHHHHHhCC-----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHH
Q 020109 171 GGSGFSGSNNNYSNNNH-----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~g-----d~ekA~e~yekALeldP~npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP~d~~ 243 (331)
|.....+.+|++|.+.. +++.|..+|.++-.... +.+.+.+|.++..-. .|+.+|.+||.+|.+.. +..
T Consensus 286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~ 361 (552)
T KOG1550|consen 286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HIL 361 (552)
T ss_pred cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChH
Confidence 34556778999999853 67889999998877765 455566666643222 46789999999998875 788
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCchHHH
Q 020109 244 ILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-GEDEEEE 297 (331)
Q Consensus 244 vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G~~eEa~ 297 (331)
+...+|.++..- ..+..+|..+|++|.+..+ +.+.+.++.++.-- +.++.+.
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHH
Confidence 888889888651 3689999999999999983 33333333333322 5554444
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.14 E-value=0.78 Score=48.51 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=102.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld-P~d~~vL~~lA~ll~~~ 255 (331)
..|..+-.+.|+++...-.|++++.--....++|.+|+..+. ..|+.+-|...+.++.++. |.-+.....+|.+--.
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~- 378 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES- 378 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-
Confidence 345667778899999999999999999999999999999875 5699999998888887765 4566667777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.|+++.|...|++..+--|....+-...+....+.|+.+.+.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 899999999999999999999988888899999999887776
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.14 E-value=1.1 Score=44.72 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=84.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh--------------------------CCCCHH---HHHHHHHHHHHHcCCHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA--------------------------NPGNAL---LLGNYARFLKEVRGDFAKAE 228 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel--------------------------dP~npe---al~~yA~lLy~~~GdyeeAe 228 (331)
-++..+..+|+++.|.++.++||-. .+.|.. +++.|...+. .+|-+.-|.
T Consensus 45 qls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~-~RG~~rTAl 123 (360)
T PF04910_consen 45 QLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG-RRGCWRTAL 123 (360)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-hcCcHHHHH
Confidence 3677888899999999998888642 122222 2344555554 579999999
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 020109 229 ELCGRAILANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 229 e~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~~ 293 (331)
++++-.+.+||. ||.....+-+.+.-..++++=-+++++........ -+...+.++.+++.+++.
T Consensus 124 E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 124 EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 999999999999 99977777766644378888888888876663221 235678888899999888
No 276
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.08 E-value=0.072 Score=50.79 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
|++.+.+.++.+.|.+.|.+|+++-|....-|+.++... +..|+.+.|..-|++.++++|.|--
T Consensus 1 ~a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 1 YAYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CcchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 345566778999999999999999999999999999884 5789999999999999999998753
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.94 E-value=0.05 Score=57.55 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 200 IEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 200 LeldP~npeal-~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+-..|.-|..+ .++|.++++..|+-..|..|+.+|+...|..-. .+..+|.++++ -+-...|-.++.|++.+....+
T Consensus 598 ~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 598 AINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred HhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCc
Confidence 33455555433 467888888899999999999999999997655 46789999999 8899999999999999999899
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCC
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHT 312 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~ 312 (331)
..++.+|.++..+.+.+.|.+-++.-+-++...++
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999877755555444443
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.29 Score=48.87 Aligned_cols=91 Identities=16% Similarity=0.016 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS----LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~----~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
-.-|..++ ..++|..|.++|-+.|+..-.|+.+.. +.|-+.+. .|+|-.|+.=..+|++++|.+..+++.=|.|
T Consensus 85 KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 85 KEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33466655 578999999999999998888776543 44555566 7999999999999999999999999999999
Q ss_pred HHHcCCchHHHhhhhhc
Q 020109 287 LWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 287 L~klG~~eEa~~~~e~~ 303 (331)
++.+.++.+|..-++++
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999977776666544
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1 Score=47.10 Aligned_cols=128 Identities=13% Similarity=-0.032 Sum_probs=99.4
Q ss_pred cccHHHHHHhCC--CcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------
Q 020109 176 SGSNNNYSNNNH--GSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN------- 243 (331)
Q Consensus 176 ~~N~A~~y~~~g--d~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~------- 243 (331)
+-.+|.++.+.+ +..+++.|.+..+...|.+ +.....+|.+++...++.+.|...+++|..+...-|.
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 345888999998 8999999999999988874 3344567888888889999999999999866543332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+...++.++......+..|...+.+|+++.-..+ ..+++++.++.-..++.-|.+.+.-+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 3556788887734488999999999999976554 55677788888888888887766533
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.89 E-value=0.89 Score=42.58 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHc-----C
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAH-----K 257 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~---~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~-----G 257 (331)
.+..+|..+|+ ...+.+++.+.++||.++.. +..|+.+|..+|++|....-.. ......++.++.. - -
T Consensus 91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~-g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS-GLQALAV 167 (292)
T ss_pred ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-Chhhhcc
Confidence 45788999998 56677889999999988653 1348999999999999886444 2446777777765 2 1
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 258 --DASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 258 --d~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+...|+.+|.+|-... +......++.+|..
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 3448999999998887 67777888877755
No 281
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.85 E-value=0.9 Score=40.12 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 207 ALLLGNYARFLKEV--RGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 207 peal~~yA~lLy~~--~GdyeeAee~~erAL~-ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
....++||..+-.. ..|..+.+.+++..++ ..|. ..++++++|...++ .++|++|+.|++.+++.+|+|..+..-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 44556777665322 3466778999999996 5554 56688889999999 999999999999999999999877543
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.76 E-value=0.6 Score=43.40 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCchHH
Q 020109 223 DFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 223 dyeeAee~~erAL~-ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd----na~vl~~lA~~L~klG~~eEa 296 (331)
.-++|.+-|-++-. -.=++++.+..+|.+|. ..|.++|+.+|-+++++... |++++..++.++.+++++++|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555554432 12257777777777666 47778888888888887542 467778888888888877765
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.89 Score=44.58 Aligned_cols=127 Identities=11% Similarity=-0.015 Sum_probs=88.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARF--LKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~l--Ly~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.|......||.+|...|+.+.|...+...=..... ..+...-+.+ +. ...+..+ ..-+++.+..||+|......+
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~-qaa~~~~-~~~l~~~~aadPdd~~aa~~l 242 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLE-QAAATPE-IQDLQRRLAADPDDVEAALAL 242 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHH-HHhcCCC-HHHHHHHHHhCCCCHHHHHHH
Confidence 55666777999999999999998887653222222 2222222322 11 1111111 245677888999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..+.. .|+.++|.+.+-..++.+- ++..+.-.+-.++.-.|..+......+
T Consensus 243 A~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 243 ADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999 9999999999999999975 666777778777777776555544443
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.61 E-value=0.18 Score=32.94 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.++..+|.++.. .|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 456677777777 78888888877777765
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.51 E-value=0.095 Score=50.00 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=54.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
..+|.+.|.+.|.+|+.+-|....-|+.++..-.+ .|+++.|...|++.++++|++..
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccccc
Confidence 46899999999999999999999999999998888 99999999999999999997764
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.23 E-value=2.2 Score=45.21 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=91.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhC--CC-CHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE---ELCGRAILAN--PS-DGNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAe---e~~erAL~ld--P~-d~~vL~~l 248 (331)
..--+|.+...++++..|+..+++..+.-|+..++-...+...+ ..++.+.+. +++...+.-- +. -...+..+
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKF 446 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHH
Confidence 45567888889999999999999999999999888888887776 568777777 3333333211 11 12234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
+++.+...++.+.|...+.+|++..|++..++..+.++.....-
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 77777768999999999999999999999999999999888873
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.08 E-value=1.4 Score=41.75 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=73.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh-CCCC---------------------------------HHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-NPGN---------------------------------ALLLGNYARFLK 218 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel-dP~n---------------------------------peal~~yA~lLy 218 (331)
+....-+|+++-.+|+..+|+..++..+.. ...+ +.++..+|..+.
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 445566799999999999999999988882 1111 223444454443
Q ss_pred HH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhCCC
Q 020109 219 EV-----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD----------------ASRAESYFDQAVKSAPD 275 (331)
Q Consensus 219 ~~-----~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd----------------~deAieyferALeldPd 275 (331)
.. ..+.+++..+|.+|++.+|+...++..+|.++...... ...|+..|-+|+...+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 21 27788899999999999999999999999887652111 13377888888888876
No 288
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.88 E-value=0.38 Score=44.38 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 192 A~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
|+.||.+|+.+.|++...++.+|.+.. ..++.-.|..+|-|++...--.+.+..++..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455555555555555555555555532 34555555555555553333334444444443
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.88 E-value=0.8 Score=42.57 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=65.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----d~~vL~~lA~ll 252 (331)
+..|+=.+-+.+.|..-|.+ ++..| ++++..+.+|.++ ...|.++|..++.++|++.+. |++++..+|.++
T Consensus 112 llYy~Wsr~~d~~A~~~fL~-~E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQ-LEGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHHhhccCcHHHHHHHHH-HcCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34455566567888888866 44444 4788989999884 479999999999999988765 599999999999
Q ss_pred HHHcCCHHHHH
Q 020109 253 WQAHKDASRAE 263 (331)
Q Consensus 253 ~~~~Gd~deAi 263 (331)
++ .++++.|-
T Consensus 189 ~~-~~~~e~AY 198 (203)
T PF11207_consen 189 QK-LKNYEQAY 198 (203)
T ss_pred HH-hcchhhhh
Confidence 99 99999885
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.83 E-value=0.25 Score=51.51 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=94.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA-ILANPS--------DGNILSLYAD 250 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA-L~ldP~--------d~~vL~~lA~ 250 (331)
.++|.+..+...++.....+....-+.+.++..-+++.| ..|++.+|.+.+-.. +...|. ...++.++|-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 356677777788888888888888889999999999987 689999999887654 444443 4456678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 251 LIWQAHKDASRAESYFDQAVKS---------A---------PDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALel---------d---------Pdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.++ .+.|+-+..+|.+|++. . .....++|+.|..|.-.|++-+|..
T Consensus 292 Ih~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 292 IHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ 356 (696)
T ss_pred Eeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence 9999 99999999999999971 1 2456789999999999999988874
No 291
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.81 E-value=2.4 Score=44.93 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=92.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..-+|-++-.+......|...|.+|=+..-.--.++..-|.+-|.-.+|..-|.+.|+--++..++.|.+...|.+++..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34455666666677788888887765543332233333343334457899999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKS--APD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALel--dPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++-+-|..+|++++.. .|+ ...+|...-.+-...|+..-..+..+
T Consensus 448 -lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 448 -LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred -hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999998 553 33677777777777888766665444
No 292
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.79 E-value=2.7 Score=43.11 Aligned_cols=117 Identities=19% Similarity=0.094 Sum_probs=83.9
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH---HHHHHHHHHHHcC
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDGNI---LSLYADLIWQAHK 257 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld---P~d~~v---L~~lA~ll~~~~G 257 (331)
+..|+++.|..|-++|.++-|.-+.++...-.-.+ ..||++.|+++.+...+.. ++-.+- ..+-|...-...-
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34578899999999999999988887765443333 4689999988888765433 322221 1111222222146
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|...|...-.+++++.|+....-...+..|.+.|+..++-+.+|
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 77888888899999999999888899999999999988888776
No 293
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=1.2 Score=45.35 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=85.5
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---H
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD---A 259 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd---~ 259 (331)
.++.-.+.-+.+.+.+|+.||+...+|.....++...-- ++..-.+++++++++||.|..++..-=++.-++... .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 344456788899999999999999999999988642222 478999999999999999988877655555443444 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+=++|.++++..++.|.-+|-+...++..+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 6778999999999999999999998888744
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.52 E-value=1.5 Score=45.61 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..++. .|+|.++.-|-....+++| ++.++.-+|.|++...+|+||-+-+.
T Consensus 469 AEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 469 AEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455677 8999999999999999999 99999999999999999999987665
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.44 E-value=0.79 Score=40.84 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
..+.+.+...+..+=-+-|+.+++-..-+.++ ...|+|.+|..+++......+.-++...++|++++- ++|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~-i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL-IARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH-HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCC
Confidence 45556666666555556666666555445443 345666666666666666666666666666666665 554
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.37 E-value=1 Score=44.88 Aligned_cols=104 Identities=8% Similarity=0.003 Sum_probs=81.0
Q ss_pred CCCcc---cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC
Q 020109 171 GGSGF---SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----SD 241 (331)
Q Consensus 171 ~~~~~---~~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-----~d 241 (331)
.|+.+ +..+...+.++|-+..|.++.+-.+.+||. ||......-+++....++|+--+++++....... .-
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 46655 456677888999999999999999999999 8887777777766677888877777777655211 13
Q ss_pred HHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 020109 242 GNILSLYADLIWQAHKDA---------------SRAESYFDQAVKSAPD 275 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~---------------deAieyferALeldPd 275 (331)
|...+..|.+++. .++. ++|.+++.+|+...|.
T Consensus 178 Pn~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 178 PNFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4566777888888 7777 8999999999998773
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.35 E-value=1.5 Score=39.44 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNIL----S 246 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~vL----~ 246 (331)
+..+|.+|.+.|+.+.|.++|.++......... .+.++..+.. ..+|+.....++.+|-..- +.|.... .
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345666666666666666666665555433221 1222222221 3466666666666664322 2222222 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALel 272 (331)
.-|..++. .++|.+|...|-.++..
T Consensus 118 ~~gL~~l~-~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLA-QRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHH-hchHHHHHHHHHccCcC
Confidence 22444444 56666666666555433
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.33 E-value=0.61 Score=41.13 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=56.4
Q ss_pred cccHHHHHHhCCC---cHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHG---SSSTDAYYEKMIE-ANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd---~ekA~e~yekALe-ldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
..|||-.+....+ ..+.+.+++..++ ..|. .-+.++.+|.-+| ..++|++|.+|++..+..+|+|..++.+-
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3577877777654 4678899999997 6665 4556677777777 57999999999999999999999886543
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.20 E-value=0.17 Score=33.07 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=17.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA 202 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel 202 (331)
+.|+|.+|..+|++++|..++++++.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456677777777777777777776664
No 300
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=1.6 Score=46.34 Aligned_cols=115 Identities=17% Similarity=-0.021 Sum_probs=84.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~y--A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
..+.-.-++..+..-+..+|.++.++..+ ... ....++...|...++.++..||+++.+...++..+.. .+....+
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-~~~~~~~ 120 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSIL-LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL-DGLQFLA 120 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhh-ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-hhhHHHH
Confidence 33333446666667777899999985443 333 3356777889999999999999999999999999987 5555555
Q ss_pred H-HHHHHHHHhCCCCHHHHHHH------HHHHHHcCCchHHHhhhh
Q 020109 263 E-SYFDQAVKSAPDDCYVLASY------AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 i-eyferALeldPdna~vl~~l------A~~L~klG~~eEa~~~~e 301 (331)
. ...+.+.+..|++..+...+ +..+..+++..++...++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4 55555999999999888777 777777777777665443
No 301
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.80 E-value=0.48 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+.++|..+|+++++..|.+..+|..++.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555555555555555555555555544
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=1.1 Score=43.39 Aligned_cols=67 Identities=18% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
+...++++.|..+.++.+.++|+||+-+.--|.+|.+ .+.+.-|++-++..++.-|+++.+-.....
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3467899999999999999999999999999999999 999999999999999999988876554443
No 303
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=1.3 Score=47.64 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=53.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
-|-|.-.+++++|..++..|...+..-|.|-. ...+++.+ |....+.++|.++++.|-+.+|.++......-.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34555566666676677766666666554322 22233333 344566677777777777777766666655555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALe 271 (331)
+... .+.-++|+........
T Consensus 437 ~~~~-E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLA-EDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHH-hcchHHHHHHHHHHHh
Confidence 5554 5666666665554443
No 304
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.11 E-value=0.26 Score=48.93 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=67.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
..+-.-|+.+-.+.+-|.+....|.+++..+|.|.+.|..-+.+-+...++.+.+...|.++|..||.+|..|..|-.+
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4455668888888899999999999999999999999876565545567999999999999999999999998876543
No 305
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.01 E-value=0.55 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARF 216 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~l 216 (331)
+++.|...|++++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34556666666666666666666665554
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.86 E-value=3.5 Score=38.42 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+|+.+...+++++|+..++.++..-.+. +.+-.++|.++. .++.+++|...++....-+ =.+.+....|+++..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~- 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA- 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-
Confidence 4566777788888888887777543321 334456777765 4678888877776543211 133344566788777
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 020109 256 HKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 256 ~Gd~deAieyferALeldPd 275 (331)
.|+-++|..-|++|++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888888743
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.81 E-value=3.1 Score=33.11 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHH----HhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 220 VRGDFAKAEELCGRAI----LANPSD-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 220 ~~GdyeeAee~~erAL----~ldP~d-----~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
..+||..|.+.+.+.+ ..+... ..++..+|.+... .|++++|+..+++||++.-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 3577777744444433 333222 3455566666666 7777777777777777743
No 308
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.68 E-value=1 Score=41.60 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 227 Aee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
|+.||.+|+.+.|++...+..+|.+... .++.=.|+-+|-|++...-..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 9999999999999998876678889999999988
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.56 E-value=2 Score=39.94 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHH----hCCC---CHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC------CCHHHHH
Q 020109 222 GDFAKAEELCGRAIL----ANPS---DGNILSLYADLIWQAHKDA-------SRAESYFDQAVKSAP------DDCYVLA 281 (331)
Q Consensus 222 GdyeeAee~~erAL~----ldP~---d~~vL~~lA~ll~~~~Gd~-------deAieyferALeldP------dna~vl~ 281 (331)
..+++|.+.|..|+. .... -+.....+||++.. .++. .+|.++|++|++... +...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 455666666655542 1212 24566778999988 8884 456666677776653 3357888
Q ss_pred HHHHHHHHcCCchHHHhhhh
Q 020109 282 SYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 282 ~lA~~L~klG~~eEa~~~~e 301 (331)
-+|.+.++.|++++|..-..
T Consensus 170 LigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999996543
No 310
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.30 E-value=4.8 Score=41.38 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA-EELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeA-ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
|+.|++.++..++-..++.+.+.+|. |.++..|-.. ..||-... .+-.++...+.|||.+.....+...+. .|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a---r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e 344 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA---RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGE 344 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh---cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccc
Confidence 45555666666666666666666663 3333333222 12332221 233344455566666666666777776 777
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 020109 259 ASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 259 ~deAieyferALeldPdna 277 (331)
+..|..--+.+....|...
T Consensus 345 ~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 345 FSAARAKAEAAAREAPRES 363 (531)
T ss_pred hHHHHHHHHHHhhhCchhh
Confidence 7777777777777777433
No 311
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.30 E-value=0.91 Score=30.68 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD 241 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~--~erAL~ldP~d 241 (331)
+.+..+|..++ ..|++++|+.+ |+-+..+++.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 34555565554 45666666666 33565555543
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.25 E-value=5.5 Score=37.84 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=72.8
Q ss_pred ccccHHHHHHhCC-CcHHHHHHHHHHHHh----C---CCCHHH-------HHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNH-GSSSTDAYYEKMIEA----N---PGNALL-------LGNYARFLKEVRG---DFAKAEELCGRAIL 236 (331)
Q Consensus 175 ~~~N~A~~y~~~g-d~ekA~e~yekALel----d---P~npea-------l~~yA~lLy~~~G---dyeeAee~~erAL~ 236 (331)
..+|.|.-+.+++ +++.|...+++|+++ . ...+.+ +..++.++. ..+ .+++|..+.+.+-.
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l-~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYL-EWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHH
Confidence 4689999999999 999999999999998 2 222222 334454432 223 44567888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
..|+.+.++...-.++.+ .++.+++.+.+.+++..-+
T Consensus 116 e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred hCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 889888887666666666 7999999999999999865
No 313
>PLN03138 Protein TOC75; Provisional
Probab=89.73 E-value=0.86 Score=50.05 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCCC
Q 020109 227 AEELCGRAILANPS 240 (331)
Q Consensus 227 Aee~~erAL~ldP~ 240 (331)
.++.+.+++.+.|.
T Consensus 166 ~e~~l~~~i~~kpG 179 (796)
T PLN03138 166 TEDSFFEMVTLRPG 179 (796)
T ss_pred hHHHHHHHHhcCCC
Confidence 34444455555544
No 314
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.33 E-value=7.1 Score=41.49 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=90.6
Q ss_pred ccccHHHHHHhCCC---cHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~~gd---~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+-.-|+.+-+..-+ +++-..+|++++.+.-.++ .++..|-.+.. ...-...|...|.+|-+.--.--.++...|.
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir-R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR-RAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH-HhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 33344444444444 6777788888888755443 35566666654 3345677888888887644333355555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+-+...+|.+-|...|+-.++..++.+..-..+.++|..+++...+....|
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 555548999999999999999999999999999999999999888876554
No 315
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.30 E-value=0.88 Score=48.05 Aligned_cols=80 Identities=18% Similarity=-0.025 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~--~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
.....|+..|.++++..|+..+.+.++|.++.+ +.++.-.|+.-...|++++|-...+|+.+++++..++++.||...
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 456778999999999999999999998887754 247777788888899999999999999999999999999999865
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
..
T Consensus 468 ~~ 469 (758)
T KOG1310|consen 468 HW 469 (758)
T ss_pred HH
Confidence 55
No 316
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=4.8 Score=42.28 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~-np--eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------- 241 (331)
....+|.+....+.++.|...|..|.++-.. +- ....++|.. |...+ +++.+|+-.-.+.|.|
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRIG---DAEDLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHhc---cHHHHHHHHHhcCCCCCCcchHHHHH
Confidence 3455666777788999999999999988554 32 333466766 44444 4666777666777764
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP-dna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+++.+|.+.+. +++++||...+.+.++..- .+- -.+.-++++..-.|+..|+....+
T Consensus 445 a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 445 ASILYVYGLFAFK-QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHHH-hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 3467788999999 9999999999999999873 111 123356777788899888886554
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.43 E-value=3 Score=37.25 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
...+.++++..++..--+-|+.+.+-..-++++.. .|++.+|+.+|....+-.+..++...-++.|+.-+++.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 36899999999999999999999999999999999 99999999999999999999899989999999998874
No 318
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.94 E-value=1.7 Score=29.35 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESY--FDQAVKSAPDD 276 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAiey--ferALeldPdn 276 (331)
+.+..+|..+.. +|++++|+++ |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 567788999999 9999999999 55888888764
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.84 E-value=6.6 Score=36.42 Aligned_cols=132 Identities=13% Similarity=0.020 Sum_probs=96.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----H
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL--GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----I 244 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal--~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-----v 244 (331)
+++.-+.-|.-+-..++.++|...|...-.-.-++...+ ...|.++. ..|+-..|..+|..+-.-.|- |. +
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~-P~~~rd~A 134 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSI-PQIGRDLA 134 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCC-cchhhHHH
Confidence 444555566667777889999999977655555554444 34456654 679999999999998765442 32 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV-KSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL-eldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
....|+++.. .|-|+.....++.+- .-+|-...+...++...|+.|++.+|...++++...
T Consensus 135 Rlraa~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 4456788888 999999888777643 345677788889999999999999999888766553
No 320
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.72 E-value=5.6 Score=40.24 Aligned_cols=111 Identities=14% Similarity=-0.046 Sum_probs=72.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------------- 240 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----------------- 240 (331)
.|-....+++ -..-+.....||++||+.+.++..+|.= ..--..+|++++++|++....
T Consensus 190 IMQ~AWRERn-p~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 190 IMQKAWRERN-PPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3444555543 3455666678999999999988888743 223456788888888754321
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 020109 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGED 293 (331)
Q Consensus 241 --------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~ 293 (331)
-.++...+|.+..+ .|+..+|++.|....+-.|-. ..++.++-..+....-|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 12345567888888 999999999999888888822 23444444444444333
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.07 E-value=8.1 Score=34.64 Aligned_cols=92 Identities=17% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCY---- 278 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~---- 278 (331)
.++..+|.+++ ..||+++|.+.|.++......... .......+.+. .+++..+..++.+|-.+-.. +..
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35567888865 689999999999999887655433 33445555566 79999999999999887542 222
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+...-|..++..+++.+|...+-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHH
Confidence 23455778888899999987664
No 322
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.96 E-value=6.3 Score=38.56 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
.+|.++..||+..|..+...+.+ .++-+.+|.++|.+..++..--.++.....+..+-++|+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RA------------------l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRA------------------LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHH------------------HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46788888888777766665554 445556777899999999888777766468899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~e 294 (331)
++.++-+|.|..+|...-.++...+++.
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999765
No 323
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.74 E-value=3.1 Score=40.29 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=64.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+..|+=..|...++++.|..+.++.|..+|++|.-+..-|.++. ..+-+.-|.+-++..+...|+++++-..-+.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35666677888899999999999999999999988888887754 67999999999999999999999886554443
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.70 E-value=7.3 Score=37.86 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEAN-----PGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSL 247 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeld-----P~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~vL~~ 247 (331)
+..+.+...+.++..+|++|...- |+. +.++-.-|.++ ..-+.++|+++|++++.+--++- +.+..
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l--env~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL--ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334455667778888888888762 222 22333445554 25788999999999986544332 23334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHh--CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 248 YADLIWQAHKDASRAESYFDQA----VKS--APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferA----Lel--dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+.++.+ .+.|.+|-..+.+- ++. .|..+..+.....+|.-..+|..|++..+
T Consensus 156 ~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 156 CSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred hhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 5677777 88999987777653 233 34445555666667777778988887665
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.55 E-value=1 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyfe 267 (331)
++..+|.+++. .|+.++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 34455555555 555555555443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.31 E-value=10 Score=40.25 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCCH
Q 020109 190 SSTDAYYEKMIE-ANPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNI----LSLYADLIWQAHKDA 259 (331)
Q Consensus 190 ekA~e~yekALe-ldP~---npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~v----L~~lA~ll~~~~Gd~ 259 (331)
..|+.|++-+++ ..+. .+.+...||.++++-..++++|+.+++|++.+... ..+. ...++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 467888887774 2222 34567789999888889999999999999888743 3322 3345677776 5555
Q ss_pred HHHHHHHHHHHHhCCC---CHHH-HHHHHH--HHHHcCCchHHHhhhhhccccc
Q 020109 260 SRAESYFDQAVKSAPD---DCYV-LASYAK--FLWDAGEDEEEEQDNEEGQHQT 307 (331)
Q Consensus 260 deAieyferALeldPd---na~v-l~~lA~--~L~klG~~eEa~~~~e~~~~~~ 307 (331)
. |..+++++++..-. ..+. .+.+.. .+...+++.-|...++.+....
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 5 99999999988654 2222 222221 2222357777777776555443
No 327
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.00 E-value=18 Score=37.86 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=90.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLG-----NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~-----~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
-.+.+++++.+|...|.|....-.+.+..+- +.-.-.| ...+.+.-+.+.-..-+..|+.+++..-.|...++
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~- 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK- 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-
Confidence 4678899999999999999988777754433 2221112 35888888889888899999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHh----CC-----------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKS----AP-----------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALel----dP-----------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++++|++.+..--.. .| .+...-...|+++..+|++.|+..++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999887644333 11 122223456999999999999987765
No 328
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=18 Score=38.79 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=76.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHH---------------------hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIE---------------------ANPGNALLL---GNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALe---------------------ldP~npeal---~~yA~lLy~~~GdyeeAee~~er 233 (331)
-+|.....+|+.+-|....+++|= +.|.|-.++ +.|-..+. ..|=+.-|.++|+.
T Consensus 289 qva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~-~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLA-QRGCWRTALEWCKL 367 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence 367777888887776666666654 244443332 33344443 56888999999999
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 234 AILANPS-DGNILSLYADLIWQAHKDASRAESYFDQA-----VKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 234 AL~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferA-----LeldPdna~vl~~lA~~L~klG~~ 293 (331)
.++++|. ||.....+-++|....++|+=-+.+++.. +..-|+-.+ -..+|.+|......
T Consensus 368 llsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 368 LLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEE 432 (665)
T ss_pred HhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCCh
Confidence 9999999 99988777777755478887777777765 445565443 34556666665543
No 329
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.08 E-value=14 Score=39.66 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=70.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSLYADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erA-----L~ldP~d~~vL~~lA~ll 252 (331)
|-..+.++|=+..|.+++.-.+.++|. ||.....+-+++.+...+|+==+++++.+ +..-|+-++.+. +|.++
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-lA~f~ 426 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-LARFF 426 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-HHHHH
Confidence 344566778889999999999999998 99887777666666667776656665555 566677776643 55555
Q ss_pred HHHcC--CHHHHHHHHHHHHHhCC
Q 020109 253 WQAHK--DASRAESYFDQAVKSAP 274 (331)
Q Consensus 253 ~~~~G--d~deAieyferALeldP 274 (331)
..... +.+.|...+.||++..|
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhCc
Confidence 55133 26789999999999988
No 330
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.00 E-value=19 Score=38.10 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=57.6
Q ss_pred HcCCHHHHHHHHHHHHHhC---C------CCHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCH---HH
Q 020109 220 VRGDFAKAEELCGRAILAN---P------SDGNILSLYADLIWQAHKDASRAESYFD--------QAVKSAPDDC---YV 279 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ld---P------~d~~vL~~lA~ll~~~~Gd~deAieyfe--------rALeldPdna---~v 279 (331)
..+++.+|....+.+.... | ..+..++..|..+.. .|+.+.|+.+|. .+....+.+. .+
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~-~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS-TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH-cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4689999988888777553 2 247778888888887 999999999998 4445555333 23
Q ss_pred HHHHHHHHHHcCCchH----HHhhhhhcccc
Q 020109 280 LASYAKFLWDAGEDEE----EEQDNEEGQHQ 306 (331)
Q Consensus 280 l~~lA~~L~klG~~eE----a~~~~e~~~~~ 306 (331)
..++..++...+...+ ....++.++..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 3456666666665444 44555544443
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.97 E-value=8.3 Score=36.93 Aligned_cols=71 Identities=24% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-+.+.+...+|+...+.-++.+|.++...-.|-++++ ..|+|++|...++-+-+++|++..-...|-.+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455678899999999999999999988877888876 7899999999999999999998776555554443
No 332
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.56 E-value=7.4 Score=42.19 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 221 RGDFAKAEELCGRAILANPSDGN------ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~------vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
..+|..+.+.|...+..-|.|.+ ..+.++.+|.. ..+.|+|.++++.|-+.+|.++......-......++-+
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 48999999999999988887654 45678888888 999999999999999999999887777766666677777
Q ss_pred HHHh
Q 020109 295 EEEQ 298 (331)
Q Consensus 295 Ea~~ 298 (331)
+|-.
T Consensus 446 ~AL~ 449 (872)
T KOG4814|consen 446 EALT 449 (872)
T ss_pred HHHH
Confidence 7763
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.27 E-value=24 Score=32.81 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARF----LKEVRGDFAKAEELCGRA-ILANPSDGNILSLYADLIW 253 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~l----Ly~~~GdyeeAee~~erA-L~ldP~d~~vL~~lA~ll~ 253 (331)
.|-.+.++|+...|..+|..+- .+..-|.....+|.+ +....|-|+.-....+.+ ...+|--..+.-.++...|
T Consensus 100 ~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ 178 (221)
T COG4649 100 AATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY 178 (221)
T ss_pred HHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH
Confidence 4556778889999999998744 444456655444432 223457787765555543 3344445556778899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+ .|++.+|..+|++... +..-+....+.+.+.++
T Consensus 179 k-agd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 179 K-AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred h-ccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9 9999999999999887 44444444555554443
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.10 E-value=5.2 Score=38.96 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=30.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALe 271 (331)
.+++++.+.+.+++.+..+|.|-..+..+-..+.+ .|+...|+..|+++-+
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKK 215 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHH
Confidence 44556666666666666666666555555555555 6666666666655544
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.93 E-value=7.5 Score=47.23 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=83.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------H-----
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--------G----- 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--------~----- 242 (331)
..++|++....|.++.|-.+.-+|.+.. -+++....|..++ ..||...|..++++.+.++--+ |
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 4578999999999999999999999888 5778888999998 5799999999999999665433 1
Q ss_pred ----HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 243 ----NILSLYADLIWQAHKDA--SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 243 ----~vL~~lA~ll~~~~Gd~--deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.++..++...-. .+++ +.-+++|..+++..|...+-++.+|..|.+.
T Consensus 1750 ~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred hhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 122233333333 3433 3457999999999997777777777666554
No 336
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.80 E-value=6.6 Score=31.25 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=39.8
Q ss_pred hCCCcHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 185 NNHGSSSTDAYYEKMIEA----NPGN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 185 ~~gd~ekA~e~yekALel----dP~n-----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
..++|..|.+.+.+.+.. +... ..++.++|.+.. ..|++++|...+++||.+...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 457899997777776665 2222 345667787764 689999999999999876543
No 337
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=82.40 E-value=8.9 Score=32.51 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH---cCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQA---HKD-------ASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~---~Gd-------~deAieyferALeldPdna~vl~~lA~~ 286 (331)
..||+-+|+++.+.++...+++. .++..-|.++++. ..+ .--|++.|.+++.+.|+.+..++.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 58999999999999999999877 3444445555431 122 2346888999999999999999999988
Q ss_pred HHHcCCchHHHhhhhhc
Q 020109 287 LWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 287 L~klG~~eEa~~~~e~~ 303 (331)
+-..-.|+++-..++++
T Consensus 88 l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRG 104 (111)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 77777788887777643
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.25 E-value=5.8 Score=31.77 Aligned_cols=52 Identities=6% Similarity=-0.027 Sum_probs=37.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYAD---LIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~---ll~~~~Gd~deAieyferALel 272 (331)
..++.++|+..|.+|++..++.+.-+..+|. ++.. .|+|.++++|..+-+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3577788888888888888887766555544 4455 68888888877766655
No 339
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.18 E-value=21 Score=35.91 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=42.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL--LLGNYA--RFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npe--al~~yA--~lLy~~~GdyeeAee~~erAL~l 237 (331)
..+.-++..++|..|...|..++..-|.+.. .+..++ ...| ...++.+|.+++++.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW-DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence 4566788899999999999999986444444 333333 2234 467899999999977653
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.08 E-value=8 Score=37.67 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
...++..++..+.. .++++.+++.+++.++.+|.+-..|..+...|++.|+...|+..++.+..
T Consensus 152 ~~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 56677788888888 99999999999999999999999999999999999999999988775544
No 341
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.58 E-value=11 Score=42.59 Aligned_cols=96 Identities=14% Similarity=-0.049 Sum_probs=73.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVR---G---DFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~---G---dyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.+...+.|++|+..|++.-.-.|+- .++.+..|..+.+.. + .+.+|..-|++.-. .|.-|-=+...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHH
Confidence 4455689999999999999999874 556677776543321 2 46677777776543 566676677788888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~v 279 (331)
.+ .++++|-++.|.-|++..|..+.+
T Consensus 563 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QR-LGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HH-hhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88 999999999999999999977753
No 342
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=1.5 Score=44.01 Aligned_cols=77 Identities=9% Similarity=0.014 Sum_probs=52.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..|.+.+..+.+++..|...-..+++.++....+++..+... ....++++|++.++.|.+..|++......+...-.
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~-~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAY-KLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHH-HhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 345666666667777777777777777777777777766663 35677778888888888888877776665554443
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.01 E-value=6 Score=41.00 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=77.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~~vL~~lA~ll~~ 254 (331)
-+.-||...++.+-|..+..+.|.+||....-+..-|.++ +...+|.+|.+-+=-|. -++-.+-.....+-.+||+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf-R~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF-RRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 4566888999999999999999999998888777777775 45678888766554442 3344344444556667776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCCCccCC
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHG 320 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~~~f~~ 320 (331)
...++|+...+.....|.=.+. ..+..+-++...+.. .+||.|-.-+|..
T Consensus 312 ---------amiEeAiTr~esfsVmYtPfat-ki~~d~iek~k~~F~------k~HPaY~~~IytD 361 (569)
T PF15015_consen 312 ---------AMIEEAITRAESFSVMYTPFAT-KIKADKIEKVKEVFT------KTHPAYVEYIYTD 361 (569)
T ss_pred ---------HHHHHHHhcccceeEEeecccc-cccHHHHHHHHHHHH------hhCccceeEEecc
Confidence 4567777777655444333332 223333333333332 4555554444443
No 344
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=79.51 E-value=17 Score=31.76 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHHhCC----C--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH-
Q 020109 186 NHGSSSTDAYYEKMIEANP----G--------NALLLGNYARFLKEVRGDFAKAEELCGRAI-------LANPSDGNIL- 245 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP----~--------npeal~~yA~lLy~~~GdyeeAee~~erAL-------~ldP~d~~vL- 245 (331)
.+-|++|..-|++|+...- . |+..+..|+..+. ..|+|++++...++|| +++.+....|
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 3678999999999998632 2 2334445555554 4688877655555554 5555554433
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 246 ---SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ---~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+..|..+.. .|+.++|+..|..+.+.
T Consensus 101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 344666666 78888888888877664
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.69 E-value=9.2 Score=38.78 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC-
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP-----------------------DD- 276 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP-----------------------dn- 276 (331)
..+..+-++....|+++||..+.++..+|.- . .--..+|+.+|++|++... .+
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--E-a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEE--E-ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--h-hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 3455666778889999999999988877652 2 2345667777777766421 01
Q ss_pred -HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 277 -CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 277 -a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++-..++.|..++|+..||.+..+
T Consensus 274 l~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1344578999999999999999887
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.43 E-value=12 Score=33.28 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 225 AKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 225 eeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn 276 (331)
+..++..++.+...| ++.++..++.++.. .|+.++|.....++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence 445677777788777 78888889999999 999999999999999999933
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.28 E-value=16 Score=37.57 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
+++..|..+|..... .|+++-|++.|.++
T Consensus 345 ~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALR-QGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHH-TTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHH-cCCHHHHHHHHHhh
Confidence 355666666666666 66666666666543
No 348
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.14 E-value=21 Score=37.52 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
...+.|.+.|-++-+..=-..+++..-|.+-+...+|+.-|...|+--+...|+++.+...|-.+++. .++-..|..+|
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLF 489 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALF 489 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 34556666666644433123333333343434467888888888888888888888888888888887 88888888888
Q ss_pred HHHHHhCC
Q 020109 267 DQAVKSAP 274 (331)
Q Consensus 267 erALeldP 274 (331)
+.+++.-.
T Consensus 490 etsv~r~~ 497 (660)
T COG5107 490 ETSVERLE 497 (660)
T ss_pred HHhHHHHH
Confidence 87776543
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.05 E-value=30 Score=38.72 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=82.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPG--N-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI----- 244 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~--n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v----- 244 (331)
+|=......++++|..++.++...-+. . +++...-|.+. ...++.++|+.+.+.++..=|.+.++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-l~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-LNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 455566678999999999888776444 1 22333334443 45799999999999999988876554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHcCCchHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSA----PDD--CYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeld----Pdn--a~vl~~lA~~L~klG~~eEa~ 297 (331)
+...+.+... .|++++|..+..++.+.. -.. ..+....+.++..+|+..-|+
T Consensus 500 ~sv~~~a~~~-~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 500 LSVLGEAAHI-RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred hhhhhHHHHH-hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5566777777 899999999999999883 222 233445577888888433333
No 350
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.79 E-value=7.6 Score=36.49 Aligned_cols=46 Identities=33% Similarity=0.405 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEA-----NPGNALLL---GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 190 ekA~e~yekALel-----dP~npeal---~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
++|..+|++|+++ .|.+|..+ .+|+.|+|+..++.++|.++.++|+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4455555555442 44454433 2445555555555555555544443
No 351
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=77.69 E-value=39 Score=28.01 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~e 232 (331)
..+...+.......|++.++..++.++.+...|..++. .-+..+..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 34555678899999999999999888888888877753 345556666666
No 352
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=77.66 E-value=11 Score=33.01 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=58.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH--
Q 020109 220 VRGDFAKAEELCGRAILANPS------------DGNILSLYADLIWQAHKDASRAESYFDQAV-------KSAPDDCY-- 278 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~------------d~~vL~~lA~ll~~~~Gd~deAieyferAL-------eldPdna~-- 278 (331)
..+-|++|..-|++|....-. |+.++..++-+++. .|+|++++.-.+++| +++-+.-.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 358999999999999876543 45667778888898 999998766555555 45555544
Q ss_pred --HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 --VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 --vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++.+..+-.+|+.+||.+.++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Confidence 34577899999999999997554
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.64 E-value=14 Score=35.21 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=76.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PSDGNI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel-----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld------P~d~~v 244 (331)
++.-|..+.+.+++..|.+...-.|+. .+-+.+...++..++........+-..+..+||+-. -.||..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 456677888888887777666655554 444666667777776533333334566667776544 248999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH----------------HHHhCCCCHHHHHHH-HHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQ----------------AVKSAPDDCYVLASY-AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyfer----------------ALeldPdna~vl~~l-A~~L~klG~~eEa~~~~e 301 (331)
+..+|..+|+ .+++.+|+.+|-. ..+-.|...+.+... ...|..+++...|....+
T Consensus 93 H~~~a~~~~~-e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 93 HHLLAEKLWK-EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHh-hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999 9999999887742 223355555554444 455666688887876554
No 354
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.54 E-value=2.6 Score=42.42 Aligned_cols=112 Identities=13% Similarity=-0.015 Sum_probs=84.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCC---CC-------------H---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANP---GN-------------A---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP---~n-------------p---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
...+++++++.|..-|.++++.-. .+ . ....+++.+. ...+++..|.....-++..++..
T Consensus 230 ~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~-lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 230 NKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVG-LKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred hhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhc-ccccCCCcceeccccccccChhh
Confidence 345667888898888888877411 10 0 1122344442 34678888999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
..+++..+..+.. ..++++|++.++.|....|++..+...+...-....++.
T Consensus 309 tka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 309 TKAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred CcHHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 9999999999988 999999999999999999999988777766655555443
No 355
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.33 E-value=37 Score=28.78 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCH
Q 020109 190 SSTDAYYEKMIEANP--GNAL-LLGNYARFLKEVR---GDFAKAEELCGRAILANPSDGNI----LSLYADLIWQAHKDA 259 (331)
Q Consensus 190 ekA~e~yekALeldP--~npe-al~~yA~lLy~~~---GdyeeAee~~erAL~ldP~d~~v----L~~lA~ll~~~~Gd~ 259 (331)
++....|++.|.... +||. .|..|-.-+-+.. +....-..++++++..-.++..+ .+..-++.+ ....
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y--a~~~ 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY--ADLS 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH--HTTB
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH--HHHc
Confidence 345566777777644 3443 4555554432222 23344566777777666554322 222233333 2344
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 SRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+.++|..+....- ..+..|..+|.++...|++++|+.+++
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 488899998888653 788889999999999999999998876
No 356
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.87 E-value=16 Score=31.99 Aligned_cols=47 Identities=28% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+...|.-.+ ..|++.-|.++.+.++..+|+|..+....|.++.+
T Consensus 70 ~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 70 ADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 444444444432 46777777777777777777777777777777665
No 357
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=75.64 E-value=49 Score=30.75 Aligned_cols=113 Identities=13% Similarity=-0.009 Sum_probs=71.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCC-------------
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPSD------------- 241 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~ldP~d------------- 241 (331)
+.++-.....++|++.|..+|--.|+..+=|...+..+| .++. ..+.-....++++.....-|..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~-~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILM-RRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHH-cCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 444555566779999999999999998877777666776 4443 3333333336776665443321
Q ss_pred -----------HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Q 020109 242 -----------GNILSLYADLIWQAHKD--------ASRAESYFDQAVKSAP--DDCYVLASYAKFLWDA 290 (331)
Q Consensus 242 -----------~~vL~~lA~ll~~~~Gd--------~deAieyferALeldP--dna~vl~~lA~~L~kl 290 (331)
|.+....-|.++- ..+ +++.++-++..+-.-| +++.+|+-+|.|+.-.
T Consensus 123 pvfrsGs~t~tp~y~~~~LW~~l~-~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 123 PVFRSGSRTHTPLYAITWLWILLI-QEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred ccccCCCcccchHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 2211112222333 344 6666677777777766 8899999999998755
No 358
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.26 E-value=40 Score=35.18 Aligned_cols=115 Identities=16% Similarity=-0.008 Sum_probs=77.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHh--------CCCCHH--HHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEA--------NPGNAL--LLGNYA-------RFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALel--------dP~npe--al~~yA-------~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
.-++++++|..|..-|..||++ +|..+. -.+..+ .++|+..++.+-|+....+.|.+||..+.
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 3456678899999999999986 222221 112222 12355678889999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQ---AVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyfer---ALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
-+..-|.++.+ ..+|.+|..-+.- +.-+.-.+..-...+-..||.+ ..+||+
T Consensus 264 nHLrqAavfR~-LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqa-miEeAi 318 (569)
T PF15015_consen 264 NHLRQAAVFRR-LERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQA-MIEEAI 318 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHH-HHHHHH
Confidence 88888888887 8999888754433 3333444444555567777765 444444
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.12 E-value=12 Score=37.25 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+..+.. .|.+.+|+++.+++++++|-+...+.-+...|...|+...+++..+
T Consensus 284 kva~~yle-~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 284 KVARAYLE-AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHH-cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 34555666 7888888888888888888777777778888888887766665444
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.99 E-value=55 Score=35.03 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=87.9
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------------- 237 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------------- 237 (331)
.+.+++.-++.+|.+. ..++--..+++..+.+=++...-..+|..+ + ..+..+|..+|.+|+..
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-E-kik~sk~a~~f~Ka~yrfI~~~q~~~i~ev 173 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-E-KIKKSKAAEFFGKALYRFIPRRQNAAIKEV 173 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-H-HhchhhHHHHHHHHHHHhcchhhhhhHHHH
Confidence 4667888899999998 668899999999999999999989999884 4 37777888887777632
Q ss_pred -------CCCCHHHHHHH------------HHH-------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 238 -------NPSDGNILSLY------------ADL-------IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 238 -------dP~d~~vL~~l------------A~l-------l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
-|+|.+....+ +.+ .+.-..++++|+..+.-.++.+..+.++.-.+...++.
T Consensus 174 WeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 174 WEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 24444433222 111 12215789999999999999999999988888888887
No 361
>PF13041 PPR_2: PPR repeat family
Probab=74.48 E-value=15 Score=25.25 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCYVLASYA 284 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeld-Pdna~vl~~lA 284 (331)
..+..+-..+.+ .|++++|.++|++..+.. +-+...+..+-
T Consensus 4 ~~yn~li~~~~~-~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 4 VTYNTLISGYCK-AGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666666 788888888888887764 23444444443
No 362
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.33 E-value=22 Score=38.43 Aligned_cols=132 Identities=16% Similarity=0.037 Sum_probs=81.9
Q ss_pred eeeEeecCCCCCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 141 VQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV 220 (331)
Q Consensus 141 ~~~~~~~~g~~~~~~~~~gg~~~~~~~~~~~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~ 220 (331)
.||+||+|--.--.|-.|.- -.--+...+.|++.++-.++| |++.++ +...+.+| ..
T Consensus 593 yqt~vmrrd~~~a~~vLp~I-----------~k~~rt~va~Fle~~g~~e~A-------L~~s~D-~d~rFela----l~ 649 (794)
T KOG0276|consen 593 YQTLVLRRDLEVADGVLPTI-----------PKEIRTKVAHFLESQGMKEQA-------LELSTD-PDQRFELA----LK 649 (794)
T ss_pred HHHHhhhccccccccccccC-----------chhhhhhHHhHhhhccchHhh-------hhcCCC-hhhhhhhh----hh
Confidence 68999988765543333332 012345677888887765554 444443 44444444 24
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH--------
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYA-------- 284 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel--------dPdna~vl~~lA-------- 284 (331)
.|+++.|.++..++ ++..-|..+|.+... .+++..|.+.|.+|-.+ ...++..+..+|
T Consensus 650 lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA-----NSEVKWRQLGDAALS-AGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred cCcHHHHHHHHHhh-----cchHHHHHHHHHHhh-cccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 57777776654443 567777888888888 88888888888877544 224444333333
Q ss_pred -----HHHHHcCCchHHHhhhh
Q 020109 285 -----KFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 285 -----~~L~klG~~eEa~~~~e 301 (331)
.+|+..|++++....+.
T Consensus 724 ~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 724 NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cchHHHHHHHcCCHHHHHHHHH
Confidence 35777788877776665
No 363
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.23 E-value=24 Score=37.73 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=64.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
..+.+.+..+.+.+..+.-+-.....+..+..-|.++. .-++.++|..+|++.+..+|+ +.++.||.-+++ .|-..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~ 91 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAK 91 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhh
Confidence 34556667777777777665555556666666677765 568889999999999999998 566788888888 89999
Q ss_pred HHHHHHH
Q 020109 261 RAESYFD 267 (331)
Q Consensus 261 eAieyfe 267 (331)
+|...++
T Consensus 92 ~~~~~~~ 98 (578)
T PRK15490 92 DAQLILK 98 (578)
T ss_pred HHHHHHH
Confidence 9988887
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.83 E-value=25 Score=29.80 Aligned_cols=76 Identities=9% Similarity=0.109 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 190 SSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 190 ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
..-...+++++..-.++ +.++...-.+ ......+.+.|..+.. +.-..+.++..+|.++.. .+++++
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y----a~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~ 117 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKY----ADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKK 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH----HTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHH
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH----HHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHH
Confidence 45566777777765443 3322211111 1222378888887765 455788889999999999 999999
Q ss_pred HHHHHHHHH
Q 020109 262 AESYFDQAV 270 (331)
Q Consensus 262 AieyferAL 270 (331)
|.+.|+++|
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999876
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=73.82 E-value=5.7 Score=27.23 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+++..+|.+-+. .++|++|++=|++|+++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 466778888887 88888888888888876
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.50 E-value=20 Score=38.02 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----C------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----D------FAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G----d------yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.|..++|...+-..-.+.|+-...+..|-+++. ..+ + --+-..|.++.+-.+..|++++...|.....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 788 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIR-LFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH- 788 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHH-HhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH-
Confidence 356677777776666778887777777776643 221 1 1234667888899999999999988888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
..+|-+|+.|+++.-+.+.....+-.++..|.-
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (831)
T PRK15180 789 LRDYTQALQYWQRLEKVNGPTEPVTRQISTCIT 821 (831)
T ss_pred HHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Confidence 999999999999999997544445455555543
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.85 E-value=5.1 Score=24.54 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~e 232 (331)
.+...+|.++. ..|++++|+..++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHh
Confidence 45566777765 5788888877765
No 368
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.75 E-value=26 Score=36.86 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 195 ~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
-++.-|+-||+|-.-|+.+-..+ ..++.+++-.+.|++...-.|--+.+|..|-.--.. ..+|...+.+|.|++...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~-~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYL-ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHH-hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhhc
Confidence 56777999999999999888885 578999999999999999999888888777554444 6899999999999999866
Q ss_pred CCHHHHHHHHHHHHHcCCch
Q 020109 275 DDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 275 dna~vl~~lA~~L~klG~~e 294 (331)
+.+.|..|-....+..+..
T Consensus 108 -~ldLW~lYl~YIRr~n~~~ 126 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLI 126 (660)
T ss_pred -cHhHHHHHHHHHHhhCccc
Confidence 4888888888888777543
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.90 E-value=8.3 Score=38.27 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=46.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALe 271 (331)
|...|.+.+|.++.+++++++|-+-..+..+-.++.. .||--.|++.|++.-+
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya~ 341 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYAE 341 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHHH
Confidence 4568999999999999999999999999988888888 9998888888877644
No 370
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=71.87 E-value=7.5 Score=25.94 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~ 286 (331)
++++|...|++.|...| +..+|..+|.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHh
Confidence 56777888888887776 46677777665
No 371
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.71 E-value=14 Score=35.13 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEA-----NPGNALLL---GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 190 ekA~e~yekALel-----dP~npeal---~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
++|...|++|+++ .|.+|..+ .|++.|+|+..++.++|.++.++|+
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555555555542 34455443 2445555555555555554444443
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.30 E-value=35 Score=38.20 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=86.7
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHH---------H--------------------hCC-----CCHHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMI---------E--------------------ANP-----GNALLLGNYARFLK 218 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekAL---------e--------------------ldP-----~npeal~~yA~lLy 218 (331)
.-++.|-+.|+...|...+|+.+.-+|= + .=| .+|.....+|-.++
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 4567888888888888888877643221 0 111 12233333444433
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHH
Q 020109 219 EVRGDFAKAEELCGRAILANPS---------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY-----VLASYA 284 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~---------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~-----vl~~lA 284 (331)
...++++|+.++.++...=+. -+......|.+... .+++++|+++.+.++..-|.+.+ ++...+
T Consensus 427 -s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 427 -SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred -HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 568999999999998765544 23456667888888 99999999999999999886554 466778
Q ss_pred HHHHHcCCchHHHh
Q 020109 285 KFLWDAGEDEEEEQ 298 (331)
Q Consensus 285 ~~L~klG~~eEa~~ 298 (331)
.+..-.|++++|-.
T Consensus 505 ~a~~~~G~~~~Al~ 518 (894)
T COG2909 505 EAAHIRGELTQALA 518 (894)
T ss_pred HHHHHhchHHHHHH
Confidence 88888898888873
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.08 E-value=20 Score=28.77 Aligned_cols=53 Identities=6% Similarity=0.051 Sum_probs=38.7
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL--KEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lL--y~~~GdyeeAee~~erAL~ 236 (331)
...++.++|+..++++|+..++.+.-+..++.+. +..-|+|.+++.+..+=+.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667889999999999999999887766555432 2345888887766655443
No 374
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=70.52 E-value=38 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 224 FAKAEELCGRAIL-----ANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 224 yeeAee~~erAL~-----ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
.++|.+.|+.|++ +.|.+|..|. +++.+++..+++.++|+++.++|+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3578999999975 5588988654 56788888789999999777777654
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.24 E-value=54 Score=33.36 Aligned_cols=54 Identities=11% Similarity=-0.040 Sum_probs=38.6
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCC--CH---HHHHHHH--HHHHHHcCCHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--NA---LLLGNYA--RFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~--np---eal~~yA--~lLy~~~GdyeeAee~~e 232 (331)
.+++.++...+|..|...|+.+++..+. .. ..+..++ ...| ..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHW-DRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHH-HccCHHHHHHHHh
Confidence 4666788899999999999999998653 22 2223333 2234 4578999999998
No 376
>PLN03138 Protein TOC75; Provisional
Probab=70.23 E-value=3.3 Score=45.64 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhCCCC
Q 020109 192 TDAYYEKMIEANPGN 206 (331)
Q Consensus 192 A~e~yekALeldP~n 206 (331)
.++.+.++|...|+.
T Consensus 166 ~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 166 TEDSFFEMVTLRPGG 180 (796)
T ss_pred hHHHHHHHHhcCCCC
Confidence 445555666666653
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.19 E-value=42 Score=34.80 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=44.4
Q ss_pred HHcCCHHHHHHHHHHHH--HhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 219 EVRGDFAKAEELCGRAI--LANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL--~ldP~--d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
...+.|+.|..+..++. ..+.+ -+.+++.+|.+..- +.+|..|.++|-+|+...|.+..
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchhh
Confidence 34578899999888886 22223 34455667777776 89999999999999999997553
No 378
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=66 Score=33.16 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLK-----------EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK- 257 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy-----------~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G- 257 (331)
+.+.+.=.+.+..||....+|+---.++. +...-.++-+.+...||+.+|+...++....+++.+ ..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence 67777778888889987666542211111 112245667889999999999999999999999987 53
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 258 -DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 258 -d~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
++..=+.+.+++++.+|.|--.|...=.++-.+.
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 3688899999999999977766655544444443
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.88 E-value=29 Score=30.86 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
.+...+..++.++..| ++.++.+++.++. ..|+.++|.+..+++..+-|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcHH
Confidence 3566677778888888 6888899998876 68999999999999999999443
No 380
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=68.31 E-value=52 Score=30.94 Aligned_cols=97 Identities=15% Similarity=0.022 Sum_probs=65.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RG--DFAKAEELCGRAILANPSDGNILSLYADLIWQA----- 255 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~G--dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~----- 255 (331)
++...|+.+|..+-. .+.+.+...++.+++-- .. +..+|++|+.+|..++ |..+-+++...++.-
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~ 162 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFK 162 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhc
Confidence 466899999988776 55677777777665411 11 4788999999998775 555544444333320
Q ss_pred ------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 256 ------------------HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 256 ------------------~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.+|.++|.++--+|-+++ ++++-.++.+.|..
T Consensus 163 t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 163 TNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKL 212 (248)
T ss_pred ccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHc
Confidence 267888888888888875 45666666666643
No 381
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.27 E-value=21 Score=37.70 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH----------hhhhhcccccCCC
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE----------QDNEEGQHQTDHS 310 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~----------~~~e~~~~~~~~~ 310 (331)
..+|.-.++ +|+|-=+.+++++++-.+|++..+..-.|.+|.++|--.|.. .+++++-.+.-..
T Consensus 456 l~la~ea~~-kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~wRn~yLtgA~ELR~Gvpk~s~~ 529 (655)
T COG2015 456 LELAREAFD-KGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATWRNFYLTGAYELREGVPKFSPT 529 (655)
T ss_pred HHHHHHHHh-cccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchhhhhHHHhHHHHhcCCCCCCCC
Confidence 345666777 899999999999999999999999999999998888654443 4677666654333
No 382
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.93 E-value=10 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHH
Q 020109 222 GDFAKAEELCGRAIL 236 (331)
Q Consensus 222 GdyeeAee~~erAL~ 236 (331)
|+|++|.++|..||+
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.87 E-value=24 Score=38.96 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=50.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
--....|+|..+..+..++.|.+||.+. ....+++.++|+ ..+|++-+.+.+ .=|+|-..+-.+|..
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly~-le~f~~LE~la~----~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLYR-LELFGELEVLAR----TLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHHH-HHhhhhHHHHHH----hcCcccchHHHHHHH
Confidence 3445778888888888999999998763 223456666653 345554433333 335666666666666
Q ss_pred HHHHcCCHHHHHHHH
Q 020109 252 IWQAHKDASRAESYF 266 (331)
Q Consensus 252 l~~~~Gd~deAieyf 266 (331)
+.. .|--++|.+.|
T Consensus 862 f~s-vGMC~qAV~a~ 875 (1189)
T KOG2041|consen 862 FTS-VGMCDQAVEAY 875 (1189)
T ss_pred HHh-hchHHHHHHHH
Confidence 655 66666665544
No 384
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.68 E-value=23 Score=30.96 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
..+.+...|...+. .|++.-|.++.+.++..+|++..+....+.+|..++..
T Consensus 69 G~d~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 34444556666777 89999999999999999999999999999999888654
No 385
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.94 E-value=41 Score=37.57 Aligned_cols=112 Identities=22% Similarity=0.171 Sum_probs=59.1
Q ss_pred HHHHHhCCCcHHHHHHHHH------HHHh----CCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHH------HHhC----
Q 020109 180 NNYSNNNHGSSSTDAYYEK------MIEA----NPGNALLL-GNYARFLKEVRGDFAKAEELCGRA------ILAN---- 238 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yek------ALel----dP~npeal-~~yA~lLy~~~GdyeeAee~~erA------L~ld---- 238 (331)
+..|.+.+++++|.+||++ |+++ .|....-+ -.++.-+ ...|+++.|...|-.| ++..
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl-~~~~q~daainhfiea~~~~kaieaai~ak 746 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHL-EQIGQLDAAINHFIEANCLIKAIEAAIGAK 746 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH-HHHHhHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 4577788889999998864 4443 23221111 1223222 2456776665554332 1110
Q ss_pred ---------C--CCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 239 ---------P--SDG----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 239 ---------P--~d~----~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|. -++-..|.-|.. .|+|+.|+++|.++=. .-....+|-+.|++++|.+.-+
T Consensus 747 ew~kai~ildniqdqk~~s~yy~~iadhyan-~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTASGYYGEIADHYAN-KGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhHhHHHHhhhhccccccchHHHHHhcc-chhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHH
Confidence 0 011 112233455555 7888888887765522 2233456777788888876544
No 386
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.26 E-value=51 Score=38.01 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+..++|.++.++. +.|.+|..+|.+..+ .+...+|++-|-+| +++..+........+.|++++-..-+
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445555544443 456666666666666 66666666655443 44555555555555666665554433
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.70 E-value=31 Score=33.14 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=53.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
..+...+|+...+.-++.+|.|....-.|-.++.- .|++++|...++-+-++.|++..
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccch
Confidence 46889999999999999999999999999998888 99999999999999999996653
No 388
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=64.58 E-value=1.1e+02 Score=27.47 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAiey 265 (331)
++...-+.||-+ ...+.++ ..+| .++. .++..++-.+.+....+.+..+|.++..+|.+|-+ .|+..+|.++
T Consensus 70 ~NlKrVi~C~~~----~n~~se~-vD~ALd~lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~el 142 (161)
T PF09205_consen 70 GNLKRVIECYAK----RNKLSEY-VDLALDILV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANEL 142 (161)
T ss_dssp S-THHHHHHHHH----TT---HH-HHHHHHHHH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cchHHHHHHHHH----hcchHHH-HHHHHHHHH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHH
Confidence 355677777644 2333333 2333 3333 57888888888888887777899999999999999 9999999999
Q ss_pred HHHHHHhC
Q 020109 266 FDQAVKSA 273 (331)
Q Consensus 266 ferALeld 273 (331)
+.+|-+..
T Consensus 143 l~~ACekG 150 (161)
T PF09205_consen 143 LKEACEKG 150 (161)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988764
No 389
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.48 E-value=21 Score=37.88 Aligned_cols=97 Identities=21% Similarity=0.117 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI--LSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v--L~~lA~ll~~~~Gd~deAieyfe 267 (331)
+...+.+.+..+..|+++..+..+|.++. ..|+.+.|..+++..+...-..... +...|++..- +.++.+|..++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence 45555556666789999999999999875 5677888999999998822222222 3345777776 799999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HHHH
Q 020109 268 QAVKSAPDDCYVLASYA-KFLW 288 (331)
Q Consensus 268 rALeldPdna~vl~~lA-~~L~ 288 (331)
...+..--...+|..++ .|++
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHh
Confidence 99999875555554444 4443
No 390
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.45 E-value=79 Score=36.57 Aligned_cols=86 Identities=15% Similarity=0.002 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
-+.|.+|..+|... ...+...+|.+.|-+| +||..+...-.+.-+ .|.|++-+.|+..|.+..- .+++-..+
T Consensus 1101 ~n~p~vWsqlakAQ-L~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~~-E~~id~eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQ-LQGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKVR-EPYIDSEL 1172 (1666)
T ss_pred hCChHHHHHHHHHH-HhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhc-CccchHHH
Confidence 45688999999885 3578889999999877 677777777788788 9999999999998887743 33444455
Q ss_pred HHHHHHcCCchHHH
Q 020109 284 AKFLWDAGEDEEEE 297 (331)
Q Consensus 284 A~~L~klG~~eEa~ 297 (331)
..+|.+.++..|-+
T Consensus 1173 i~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHHhchHHHHH
Confidence 55677777765544
No 391
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.99 E-value=31 Score=32.74 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=55.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHH----------HcCCH-HHH-HHHHHHHHH-hC-CC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-NYARFLKE----------VRGDF-AKA-EELCGRAIL-AN-PS 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~-~yA~lLy~----------~~Gdy-eeA-ee~~erAL~-ld-P~ 240 (331)
+...-.|++-.|+|+.|....+.||+.+=.-|+-+. ..+.++.. ..|+- +-+ ...+..... .+ |+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd 165 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD 165 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh
Confidence 445567888899999999999999998655443322 23322211 11221 000 111111111 11 12
Q ss_pred C--HHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHhCCC
Q 020109 241 D--GNILSLYADLIW---------QAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 241 d--~~vL~~lA~ll~---------~~~Gd~deAieyferALeldPd 275 (331)
. +..+...|..++ . .++...|+.++++|++++|.
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d-~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGD-AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccC-cccHHHHHHHHHHHHHhCCC
Confidence 1 223334566553 3 46788999999999999983
No 392
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.86 E-value=45 Score=35.44 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCC----CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAIL---ANPS----DGNILSLYADLIWQAHKD-ASRAESYFDQAVKSAPD 275 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL~---ldP~----d~~vL~~lA~ll~~~~Gd-~deAieyferALeldPd 275 (331)
.++.++ +..|+...|..+|..++. ..-. -|.+++.+|.++|. ++. ..+|.+++.+|.+...+
T Consensus 454 L~g~~l-R~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 454 LKGVIL-RNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhccc
Confidence 446665 467999999999999982 2222 56788999999999 877 99999999999998753
No 393
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.82 E-value=15 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARF 216 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~l 216 (331)
.++.|...|++.+...|. +..|..||.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 356677777777776654 5556666654
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.11 E-value=72 Score=30.32 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=67.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHH----------------HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEK----------------MIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yek----------------ALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
|-+.++.-+|..|.+.+++.+|..+|-. ..+-+|.+...+..-|.+.|...++...|...+..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3567888899999999999888877621 113467777777777777777789999888876666
Q ss_pred HHh----CC-----------CCHHHHHHHHHHHHHH--cCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 235 ILA----NP-----------SDGNILSLYADLIWQA--HKDA---SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 235 L~l----dP-----------~d~~vL~~lA~ll~~~--~Gd~---deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++. .| ..| +.++.+++..+ .++. ..-.+.|...|+.+|.-...+..+|..|.....
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~P--llnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYP--LLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-H--HHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHhccCcchhccccCCCCCCc--hHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 655 33 233 23334333321 2222 122334444555666667777888888887543
No 395
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.22 E-value=41 Score=41.37 Aligned_cols=64 Identities=20% Similarity=0.172 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
-.+.|..+|.+. +..|.++.|..+.-.|.+.. -+.+....|..+|+ .|+...|+.++++.+.++
T Consensus 1669 ~ge~wLqsAria-R~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIA-RLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHH-HhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHhh
Confidence 477899999995 57899999999999998887 67777889999999 999999999999999664
No 396
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.07 E-value=44 Score=35.56 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
|+.-.|-.-...+|...|.+|......+.+.- ..|+|+.|.+.+.-+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDISDV 349 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhhch
Confidence 56666666777788888888887777776643 456666665554433
No 397
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=58.84 E-value=57 Score=36.95 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=61.6
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---H-cCCHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---A-HKDASRAE 263 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---~-~Gd~deAi 263 (331)
.+++|...|++ |.--|.-|.=+.+-|.+ |+..++|++-.++|..|++.-|+.|..-..--.+.++ . ..+...|.
T Consensus 534 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSY-LHGGVGAPLEYLGKALV-YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHH-hcCCCCCchHHHhHHHH-HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777765 45567777767777777 6789999999999999999999999875544444333 0 13345566
Q ss_pred HHHHHHHHhCCCCH
Q 020109 264 SYFDQAVKSAPDDC 277 (331)
Q Consensus 264 eyferALeldPdna 277 (331)
.+.--++...|...
T Consensus 612 ~~~~~~~~~~~~~~ 625 (932)
T PRK13184 612 VFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHhCcccc
Confidence 66667777777554
No 398
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.23 E-value=36 Score=36.46 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=43.1
Q ss_pred CCcccccHHHHHHhCC--CcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH--GSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g--d~ekA~e~yekALel-----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ 236 (331)
=++.++|||.+..... +-..++++|.+||.. +.....-+..+|.++| ..++|.+|+.+|-.|-.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY-RHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHH-HHHHHHHHHHHHHHHHH
Confidence 3556889998887664 457889999999985 3334444555677777 57999999999988843
No 399
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.20 E-value=83 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhCCCCH
Q 020109 226 KAEELCGRAILANPSDG 242 (331)
Q Consensus 226 eAee~~erAL~ldP~d~ 242 (331)
+|.+.+.+++...|+++
T Consensus 31 ~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 31 KAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHhCCChH
Confidence 44444444444444444
No 400
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=57.63 E-value=53 Score=25.87 Aligned_cols=46 Identities=22% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 225 AKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 225 eeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~v 279 (331)
+.|..+..+|++.|-..- +.-|.+ .|.+|++++.++++..||+.-.
T Consensus 4 ~~A~~~a~~AVe~D~~gr---~~eAi~------~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 4 EMARKYAINAVKAEKEGN---AEDAIT------NYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHHhcCC---HHHHHH------HHHHHHHHHHHHHHhCCChHHH
Confidence 357777777777664322 111222 2457777778888888887753
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.02 E-value=37 Score=31.90 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAIL-----ANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL~-----ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|++|+. +.|.+|..+. +++.+++...++.++|++..++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 568888888874 6888988654 57888877789999999888877765
No 402
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.88 E-value=1.6e+02 Score=33.11 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAESYFD 267 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~--~~Gd~deAieyfe 267 (331)
+.-+.-++.-+.+++.+......|-.++. ..|++++-...-.++..+.|..+.+|..+..-... ..++..++...|+
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 44455555666777777777777777765 67999998888888899999999998877654432 2477788888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 268 QAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 268 rALeldPdna~vl~~lA~~L~klG~ 292 (331)
+|+.- -+...+|..++.++...++
T Consensus 175 kal~d-y~~v~iw~e~~~y~~~~~~ 198 (881)
T KOG0128|consen 175 KALGD-YNSVPIWEEVVNYLVGFGN 198 (881)
T ss_pred HHhcc-cccchHHHHHHHHHHhccc
Confidence 88865 3466777888877777666
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.69 E-value=18 Score=25.57 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=21.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIE 201 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALe 201 (331)
.++|+.|.+.|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999988884
No 404
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.51 E-value=1.6e+02 Score=29.91 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=58.3
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCC----HH----HHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN----AL----LLGNYARFLKEVRGDFAKAEELCGRA--ILANPSDGNILS 246 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~n----pe----al~~yA~lLy~~~GdyeeAee~~erA--L~ldP~d~~vL~ 246 (331)
.-+|..|++.+++..|...+ -+|..+.+. .+ .+..+|.+ |...+|..+|+.|..|+ +..+..|...+.
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarl-yLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARL-YLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 45889999999998887665 334444421 11 23355666 45688999999999998 455556666554
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 247 ----LYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 247 ----~lA~ll~~~~Gd~deAieyferAL 270 (331)
.||.++=. .++|=+|..-|-+..
T Consensus 185 e~kvc~ARvlD~-krkFlEAAqrYyels 211 (399)
T KOG1497|consen 185 EYKVCYARVLDY-KRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45555544 567666655444443
No 405
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=54.18 E-value=9.1 Score=36.57 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 020109 153 NGGKICDG 160 (331)
Q Consensus 153 ~~~~~~gg 160 (331)
+|||.|||
T Consensus 253 ~CgggcGg 260 (269)
T COG4278 253 FCGGGCGG 260 (269)
T ss_pred ccCCCCCC
Confidence 34444444
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.70 E-value=53 Score=30.72 Aligned_cols=52 Identities=17% Similarity=0.021 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~ 298 (331)
..+|..++. .|++++|+++|+.+....- -...++..+..|+..+|+.++...
T Consensus 182 ~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 182 LEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 355666666 7777777777777754422 122455566677777777665553
No 407
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.47 E-value=65 Score=33.28 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=61.7
Q ss_pred cccHHHHHHhCCCcHHHHHH-------HHHHHH---------h--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAY-------YEKMIE---------A--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~-------yekALe---------l--dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
+...+.|++++|..+.|... |+-||+ . .-+++..|..+|... ..+|+++-|+++|.++-
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~A-L~~g~~~lAe~c~~k~~-- 374 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEA-LRQGNIELAEECYQKAK-- 374 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHH-HHTTBHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHH-HHcCCHHHHHHHHHhhc--
Confidence 66788999999999988764 444444 2 445788999999885 47899999999999873
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
|. ..+..++.- .|+.+.-.++.+.|.+..-
T Consensus 375 ---d~---~~L~lLy~~-~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 375 ---DF---SGLLLLYSS-TGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp ----H---HHHHHHHHH-CT-HHHHHHHHHHHHHTT-
T ss_pred ---Cc---cccHHHHHH-hCCHHHHHHHHHHHHHccC
Confidence 32 334455555 7877766666666665544
No 408
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=52.42 E-value=48 Score=31.19 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CC-
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKE----VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH----KD- 258 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~----~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~----Gd- 258 (331)
++++|...|.+--.. ...+...+.|+..... ..++...|.++|+.|... +++.+-..++.++|... .+
T Consensus 50 nF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~dp 126 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKADP 126 (248)
T ss_pred HHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccCCC
Confidence 445555554432221 2245666677655321 124778888888888764 57777778888887611 22
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 259 -ASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 259 -~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
..+|+.|+.||-.+ ++..+-+.+...++
T Consensus 127 d~~Ka~~y~traCdl--~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 127 DSEKAERYMTRACDL--EDGEACFLLSTMYM 155 (248)
T ss_pred CcHHHHHHHHHhccC--CCchHHHHHHHHHh
Confidence 56788888887543 66666666655554
No 409
>PF12854 PPR_1: PPR repeat
Probab=52.19 E-value=32 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
.+..+-..+-+ .|+.++|+++|++
T Consensus 9 ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 33444444444 5555555555554
No 410
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=52.01 E-value=1.9e+02 Score=29.19 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=65.6
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHHHHcC-C------HHHHHHHHHHHHHhC-
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-------FLKEVRG-D------FAKAEELCGRAILAN- 238 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~-------lLy~~~G-d------yeeAee~~erAL~ld- 238 (331)
....-+|++++-.++|+.|...|+.+..---+|. +|..||. .+. +.+ . .+....+++.|+..-
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk-aw~~~A~~~Em~alsl~-~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK-AWKYLAGAQEMAALSLL-MQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch-hHHHHHhHHHHHHHHHH-hcCCCCccccccccHHHHHHHHHHHHH
Confidence 3355689999999999999999988777544333 3333332 222 222 1 124455555554211
Q ss_pred -------C---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CC---CHHHHHHHHHHH
Q 020109 239 -------P---SDGNILSLYADLIWQAHKDASRAESYFDQAVKS--A--PD---DCYVLASYAKFL 287 (331)
Q Consensus 239 -------P---~d~~vL~~lA~ll~~~~Gd~deAieyferALel--d--Pd---na~vl~~lA~~L 287 (331)
. .-..+...++.++.. .+.+.+|...+-++... + -. .+-++.+++.|+
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~-~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKS-RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 1 122233344555445 89988888777776666 2 34 556677777777
No 411
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.87 E-value=28 Score=27.67 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHhC
Q 020109 222 GDFAKAEELCGRAILAN 238 (331)
Q Consensus 222 GdyeeAee~~erAL~ld 238 (331)
+.|++|.++.++||..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34667777777777665
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.81 E-value=26 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..+|..|+. +|+.+.|.+.++..+..
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHHc
Confidence 568999999 99999999999999953
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.80 E-value=1e+02 Score=28.74 Aligned_cols=79 Identities=18% Similarity=-0.028 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc
Q 020109 189 SSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAH 256 (331)
Q Consensus 189 ~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~~vL~~lA~ll~~~~ 256 (331)
-...++++.+|++..... ......+|..++ ..|+|++|.++|+.+...--. ...++..+..++.. .
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~-~ 231 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR-L 231 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-h
Confidence 356778888888764432 233446677765 689999999999999655332 23344555566666 7
Q ss_pred CCHHHHHHHHHHH
Q 020109 257 KDASRAESYFDQA 269 (331)
Q Consensus 257 Gd~deAieyferA 269 (331)
|+.+..+.+.-++
T Consensus 232 ~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 GDVEDYLTTSLEL 244 (247)
T ss_pred CCHHHHHHHHHHH
Confidence 7777666655443
No 414
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=50.73 E-value=10 Score=36.14 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
.+.-.|+.++.+-|..++ -.++.++++
T Consensus 156 EfrdaLaelle~~G~~~~-gqelpeg~~ 182 (263)
T KOG3074|consen 156 EFRDALAELLEDFGEGDE-GQELPEGTS 182 (263)
T ss_pred HHHHHHHHHHHHhCCccc-cCCCCCCCe
Confidence 455667777777777666 234444443
No 415
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.41 E-value=83 Score=28.12 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=40.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
..+..+++-++-...++.....+.-+|+++..+|..+ ...|+..+|.+++.+|.+..
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay-~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAY-KKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHH-HHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHH-HHhcchhhHHHHHHHHHHhc
Confidence 3566777778888888887776667899999999996 47899999999999998753
No 416
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=50.07 E-value=33 Score=24.28 Aligned_cols=30 Identities=43% Similarity=0.560 Sum_probs=13.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 231 CGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 231 ~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
|.+||-.+|++...+..||.-+-. .|+.++
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e-~gdp~r 34 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDE-HGDPAR 34 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHH-cCCHHH
Confidence 334444444444444444444444 444433
No 417
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.18 E-value=29 Score=27.34 Aligned_cols=15 Identities=0% Similarity=0.084 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhCC
Q 020109 190 SSTDAYYEKMIEANP 204 (331)
Q Consensus 190 ekA~e~yekALeldP 204 (331)
++|+.++.+|+..|.
T Consensus 4 ~kai~Lv~~A~~eD~ 18 (75)
T cd02680 4 ERAHFLVTQAFDEDE 18 (75)
T ss_pred HHHHHHHHHHHHhhH
Confidence 455555555555443
No 418
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=48.87 E-value=33 Score=26.02 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHH
Q 020109 222 GDFAKAEELCGRA 234 (331)
Q Consensus 222 GdyeeAee~~erA 234 (331)
|++++|..+|.+|
T Consensus 22 g~~~eAl~~Y~~a 34 (77)
T smart00745 22 GDYEEALELYKKA 34 (77)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444333
No 419
>PF12854 PPR_1: PPR repeat
Probab=48.83 E-value=31 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 276 DCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 276 na~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
|...|..+...|.+.|+.++|.+.++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 7778999999999999999999988754
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.57 E-value=99 Score=26.53 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 SRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++.++|..+....- .-+..|..+|.++...|++.+|+.+++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457778888877764 667788899999999999999998876
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.31 E-value=1.6e+02 Score=29.58 Aligned_cols=110 Identities=11% Similarity=-0.056 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCC-C-----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH---HHHHHHHHHHHcC
Q 020109 190 SSTDAYYEKMIEANP-G-----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNI---LSLYADLIWQAHK 257 (331)
Q Consensus 190 ekA~e~yekALeldP-~-----npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~v---L~~lA~ll~~~~G 257 (331)
++-++.+.++|+... . -.+++.++|.+++ +.+|.+.+.+.+++.+..+-. ..++ ...+|.++-. +.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~-qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d-~~ 169 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYC-QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD-RK 169 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc-HH
Confidence 455555555554322 2 2678899999966 579999999988887754432 2233 3345555554 44
Q ss_pred CHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPD---DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPd---na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
=.++-++..+-.++..-+ .-..-..+|.+.+..-++.+|..-+-
T Consensus 170 vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~ 216 (412)
T COG5187 170 VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLS 216 (412)
T ss_pred HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445566666666666442 11233456777777888888886554
No 422
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=48.13 E-value=32 Score=21.45 Aligned_cols=15 Identities=33% Similarity=0.264 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHh
Q 020109 223 DFAKAEELCGRAILA 237 (331)
Q Consensus 223 dyeeAee~~erAL~l 237 (331)
|..+|..+|++|.+.
T Consensus 20 d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 20 DLEKALEYYKKAAEL 34 (36)
T ss_pred CHHHHHHHHHHHHHc
Confidence 555566666655543
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.65 E-value=1.2e+02 Score=30.40 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 213 YARFLKEVRGDFAKAEELCGRAILA-NPSDG-NILS--LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 213 yA~lLy~~~GdyeeAee~~erAL~l-dP~d~-~vL~--~lA~ll~~~~Gd~deAieyferALel 272 (331)
.+.-++ ..++|..|.+.++.++.. .+... ..+. ..|..+|+ .-++++|.++++..+..
T Consensus 137 ~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 344445 579999999999999986 44333 2333 34566688 99999999999987764
No 424
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.43 E-value=1e+02 Score=27.13 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=40.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCC--------HHH-------HHHHHHHHHHHcCCHHHHHHHHHHH----HHh
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN--------ALL-------LGNYARFLKEVRGDFAKAEELCGRA----ILA 237 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~n--------pea-------l~~yA~lLy~~~GdyeeAee~~erA----L~l 237 (331)
.++|.-..+.++.-.|+.+|++|+.+--+- .+. .-|+|.| |+..||-+-.++|++-| +.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~F-WR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADF-WRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHH-HHHcCChHHHHHHHHHHHHHHHHh
Confidence 467777788888899999999988752211 111 1255666 45666666666666544 344
Q ss_pred CCCCH
Q 020109 238 NPSDG 242 (331)
Q Consensus 238 dP~d~ 242 (331)
-|..|
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 55443
No 425
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=46.91 E-value=2.2e+02 Score=27.74 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=70.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHH-HHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYAR-FLKEVRGDF---AKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~----npeal~~yA~-lLy~~~Gdy---eeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+-+...++|++-.+.|.+..+..-+ ...+...... .++-..... ..-.+.++.=++..|+...++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4456778999999999988765332 2222111111 011111111 1356666666899999999888877555
Q ss_pred HHH---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 253 WQA---------------------HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 253 ~~~---------------------~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
... ..-.+.|..++.+|++++|....+...+-.+-...|+.
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 331 12356789999999999998887777666555555543
No 426
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.73 E-value=2e+02 Score=33.46 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=89.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHH-----------------------------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLG----NYARFLKE----------------------------- 219 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeld--P~npeal~----~yA~lLy~----------------------------- 219 (331)
..=.+|++|...|.+..|+.+|..|+..- .+|..++. +++.++..
T Consensus 244 ~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~ 323 (1185)
T PF08626_consen 244 LQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSP 323 (1185)
T ss_pred hhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCc
Confidence 45568899999999999999999999863 33333222 22221110
Q ss_pred ---------------------------------HcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHcC---
Q 020109 220 ---------------------------------VRGDFAKAEELCGRAILA----NPS--DGNILSLYADLIWQAHK--- 257 (331)
Q Consensus 220 ---------------------------------~~GdyeeAee~~erAL~l----dP~--d~~vL~~lA~ll~~~~G--- 257 (331)
....+++|+.+|.++... .|. ..++...++.++.. ..
T Consensus 324 ~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~-~~~~~ 402 (1185)
T PF08626_consen 324 RNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA-QHLSD 402 (1185)
T ss_pred ccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH-hhccc
Confidence 001357789999999622 222 23455567777776 66
Q ss_pred -----------------CHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 258 -----------------DASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 258 -----------------d~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
...++.+++.+|+.... +.+.++..+|.+|..+|-..++...+++...
T Consensus 403 ~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 403 NLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred chhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 67888888888887654 4567889999999999998888877765444
No 427
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=46.69 E-value=37 Score=25.72 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHH
Q 020109 222 GDFAKAEELCGRAI 235 (331)
Q Consensus 222 GdyeeAee~~erAL 235 (331)
|++++|..+|..|+
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555444444443
No 428
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.41 E-value=80 Score=31.25 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANP-------SDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP-------~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
.+++.++.+..-.-.+-..+.++||+=.- .+|+++..+|..+|. .++..+|..+|-.
T Consensus 89 anl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~-e~~~~~a~~HFll 152 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWT-EDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cccHHHHHhHhhh
Confidence 34444444333344455667777775433 489999999999999 9999999888863
No 429
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.23 E-value=39 Score=39.19 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=69.3
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEA-------N-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPS 240 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALel-------d-P~npeal~~yA~lLy~~~GdyeeAee~~erAL~l--------dP~ 240 (331)
.-+|+.+...+++++|+.+-++|.-+ | |+....+.+++.+.+ ...+...|...+.+|+.+ .|.
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~~l~~Ls~ge~hP~ 1055 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRALKLKLLSSGEDHPP 1055 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHHHhhccccCCCCCc
Confidence 34788888899999999988776553 3 344556677776644 456777788888777654 344
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
-+....++..++.. .++++.|+.+++.|++..
T Consensus 1056 ~a~~~~nle~l~~~-v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1056 TALSFINLELLLLG-VEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 44455667777777 899999999999999964
No 430
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.73 E-value=95 Score=31.48 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHH
Q 020109 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSDGNILSLYADLI--WQAHKDASRAESYF 266 (331)
Q Consensus 191 kA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~--~erAL~ldP~d~~vL~~lA~ll--~~~~Gd~deAieyf 266 (331)
.-..++++-...-|+.-+.++.||.+.| .+|+|..|-.| |-+++..+|+--+.-..+|.+. +. ..+++.|.+-+
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqy-eCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL-~qnWd~A~edL 190 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQY-ECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL-TQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 3344444555567777889999999998 58999888654 4455554444324444455544 23 57889999888
Q ss_pred HHHHHh
Q 020109 267 DQAVKS 272 (331)
Q Consensus 267 erALel 272 (331)
.|..+.
T Consensus 191 ~rLre~ 196 (432)
T KOG2758|consen 191 TRLREY 196 (432)
T ss_pred HHHHHH
Confidence 877665
No 431
>PF15469 Sec5: Exocyst complex component Sec5
Probab=45.15 E-value=1.3e+02 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=14.2
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 020109 220 VRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ld 238 (331)
..|+|+.|...|.+|..+-
T Consensus 98 ~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HcCcHHHHHHHHHHHHHHH
Confidence 4688888888888886554
No 432
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.90 E-value=37 Score=26.96 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
+.|++|.++..+||..|...-. ..|..+ |.+|.+.+++++.+.
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~~---e~Al~~------Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGDK---EQALAH------YRKGLRELEEGIAVP 45 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCCH---HHHHHH------HHHHHHHHHHHcCCC
Confidence 4678999999999988765211 112222 345666666666554
No 433
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.83 E-value=36 Score=20.26 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=11.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALe 271 (331)
-..+.+ .|++++|.+.|++..+
T Consensus 7 i~~~~~-~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 7 ISGYCK-MGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHc-cchHHHHHHHHHHHhH
Confidence 334444 5555555555555443
No 434
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.50 E-value=32 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=17.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHh
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEA 202 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALel 202 (331)
+|......++|++|+.-|+++|++
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 566666777788888888887765
No 435
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=44.34 E-value=1.2e+02 Score=29.96 Aligned_cols=46 Identities=20% Similarity=0.040 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
..-+|+..++.++..+|.|..+...+..++ ...|-...|.+.|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY-~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLY-SLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHhc
Confidence 346899999999999999999988888875 4679888888888765
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.24 E-value=4e+02 Score=28.91 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=71.3
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npea----l~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
...+.+.|...+.+......-+++- ...+|.-+ ... ...+|..++..+.... .+..++.-...+.+. .++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~--a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~-~~dw 328 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRL--MGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALG-TGDR 328 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHH-ccCH
Confidence 3445567777776654444433222 12223221 223 2567777777665433 233443434444456 7888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+.+..++..+-...-......|-+|+.+..+|+.++|...+++..
T Consensus 329 ~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 329 RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888887655445677889999999999999999988777553
No 437
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.04 E-value=64 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHH
Q 020109 221 RGDFAKAEELCGRAI 235 (331)
Q Consensus 221 ~GdyeeAee~~erAL 235 (331)
.|+|++|..+|.+|+
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (75)
T cd02678 19 AGNYEEALRLYQHAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 438
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.60 E-value=1.5e+02 Score=23.02 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
..|+.++.+|++.|.. .+|...+ .-|.+|+++|..+++..|+.
T Consensus 4 ~~a~~l~~~Ave~D~~-----g~y~eAl----~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 4 LAAKEVLKRAVELDQE-----GRFQEAL----VCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHHHHHh-----ccHHHHH----HHHHHHHHHHHHHHhhCCCH
Confidence 4677777777666543 1111111 11445666666666666644
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.12 E-value=1.7e+02 Score=29.88 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
++..-|.++.+ .|+.++|.+.|++|+.+.++.....+
T Consensus 367 ~h~~RadlL~r-Lgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 367 YHAARADLLAR-LGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred cHHHHHHHHHH-hCChHHHHHHHHHHHHhcCChHHHHH
Confidence 44556777777 88888888888888888876665433
No 440
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.79 E-value=83 Score=36.65 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=83.7
Q ss_pred HHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHH
Q 020109 190 SSTDAYYE-KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 190 ekA~e~ye-kALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l--------dP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
.++..++. .+-.+.|..+..+..+|.+.+ ..+++++|..+..+|+-+ .|+....+..++.+.+. .++.-
T Consensus 955 ~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~ 1032 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLS 1032 (1236)
T ss_pred hhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCcc
Confidence 45555776 666779999999999999976 679999999998888633 34566677788888888 88999
Q ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 261 RAESYFDQAVKS--------APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 261 eAieyferALel--------dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|...+.+++++ .|.-+..-.++..++...++++.|..-++
T Consensus 1033 ~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1033 GALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred chhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999887 35555555677777777777777765443
No 441
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.74 E-value=36 Score=26.55 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
.+|+..+.+|++.|-. .+|... ..-|..|+++|..+++..++
T Consensus 4 ~~A~~l~~~Ave~d~~-----~~y~eA----~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 4 EQAAELIRLALEKEEE-----GDYEAA----FEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHHH-----hhHHHH----HHHHHHHHHHHHHHhccCCC
Confidence 5777788777776654 222222 12244566666666665543
No 442
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.05 E-value=54 Score=41.82 Aligned_cols=98 Identities=8% Similarity=0.106 Sum_probs=65.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CC-H---HHHHHHHHHHHHhCCCCHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---GD-F---AKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~---Gd-y---eeAee~~erAL~ldP~d~~v 244 (331)
.+-+++--|.|+.+.++.++|...|..|++++-+-+.+|+.+|.++.... .+ . ..|..||-+|+... ++-.+
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~ska 2889 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKA 2889 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhh
Confidence 45566667788999999999999999999999999999999997765332 11 2 34666666665543 34455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+-.+|.++|- =.++.|...+.++++.
T Consensus 2890 Rk~iakvLwL--ls~dda~~~l~~~~~k 2915 (3550)
T KOG0889|consen 2890 RKLIAKVLWL--LSFDDSLGTLGDVFDK 2915 (3550)
T ss_pred HHHHHHHHHH--HHhccccchHHHHHHH
Confidence 6666766664 3334444444444443
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=40.46 E-value=66 Score=19.22 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=13.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALel 272 (331)
-..+.+ .|++++|.++|.+..+.
T Consensus 7 i~~~~~-~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 7 IDGLCK-AGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHc
Confidence 334445 66666666666665543
No 444
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=40.29 E-value=59 Score=36.11 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 269 AVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 269 ALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+...-|++...+-.+|..+...|.-++|.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 33444555555556666666665555544
No 445
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=39.90 E-value=71 Score=20.20 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHH
Q 020109 223 DFAKAEELCGRAIL 236 (331)
Q Consensus 223 dyeeAee~~erAL~ 236 (331)
|+.+|.++|++|.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 34556666666554
No 446
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=39.84 E-value=57 Score=23.10 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
..|.+||-.+|++...+..||..+...|+...++
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 4578999999999999999999999999986655
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=39.71 E-value=1.8e+02 Score=23.96 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=50.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCH-------HHHHHHHHHHHHcC
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ-AVKSAPDDC-------YVLASYAKFLWDAG 291 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer-ALeldPdna-------~vl~~lA~~L~klG 291 (331)
..+.......|++.++..++.++.+...+..++.+ -+..+.++++.. .-..+++.+ ..|.....+|.+.|
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 34678889999999999998999999999888876 456677777773 111111111 12344555566666
Q ss_pred CchHHHh
Q 020109 292 EDEEEEQ 298 (331)
Q Consensus 292 ~~eEa~~ 298 (331)
++++|..
T Consensus 97 ~~~~Al~ 103 (140)
T smart00299 97 NFKDAIV 103 (140)
T ss_pred CHHHHHH
Confidence 7666653
No 448
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.38 E-value=70 Score=31.49 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 223 DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 223 dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfe 267 (331)
..-+|.-+++.++..+|.|+.+...+..+|.. .|-...|.+.|.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~ 241 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45679999999999999999999999999998 999999988876
No 449
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.05 E-value=82 Score=19.09 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALe 271 (331)
..+...+.+ .|+++.|..+|++..+
T Consensus 5 ~~ll~a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 5 NALLRACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 344445555 6666666666666554
No 450
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.79 E-value=46 Score=25.97 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhC
Q 020109 225 AKAEELCGRAILAN 238 (331)
Q Consensus 225 eeAee~~erAL~ld 238 (331)
.+|..++.+|++.+
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.72 E-value=49 Score=33.94 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=50.6
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~n--------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.+.+.+.-.|||..|+..++. |.++... -...+-|..+.|.+.++|.+|.+.|...|..--.....+..-.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 345666777888888888754 3333221 1112223334456778899999998888753211110000000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPd 275 (331)
.-+-...+..++...++-=++.+.|.
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 00000025556666666667777773
No 452
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.26 E-value=4.5e+02 Score=26.86 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCH--HHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCC
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAP----DDC--YVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSP 314 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldP----dna--~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~ 314 (331)
||.-+..++....+...|.++|++++++.++.-- .++ +.....+.++...|+..++.+.+++..+-.|.....|
T Consensus 73 Nplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~ 152 (380)
T KOG2908|consen 73 NPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT 152 (380)
T ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC
Confidence 5555566666665547899999999998877621 123 3455678899999999999987776666555554444
Q ss_pred C
Q 020109 315 P 315 (331)
Q Consensus 315 ~ 315 (331)
+
T Consensus 153 ~ 153 (380)
T KOG2908|consen 153 S 153 (380)
T ss_pred h
Confidence 4
No 453
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.01 E-value=2.2e+02 Score=32.03 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSA--PD-DCYVLAS 282 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeld--Pd-na~vl~~ 282 (331)
..++...|++.+.+.++.++|..+++..+...-.+.. .|..+..+-.. .|+...|..++.+|+-.- |+ -..++..
T Consensus 461 ~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~-~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~ 539 (881)
T KOG0128|consen 461 TEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE-YGDGPSARKVLRKAYSQVVDPEDALEVLEF 539 (881)
T ss_pred HHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH-hCCchhHHHHHHHHHhcCcCchhHHHHHHH
Confidence 4566778888777889999999999999988877777 67777777676 799999999888887653 43 3456666
Q ss_pred HHHHHHHcCCchHHHhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e 301 (331)
+-.+....|.++..+...+
T Consensus 540 ~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 540 FRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHhccccHHHHhhhHH
Confidence 6666676777766664433
No 454
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=71 Score=33.21 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=46.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHH--hCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIE--ANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALe--ldP~n--peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
..-+-+.|...+.|++|....-+..- .+.+| +.+++-++.+. ..+.+|..|.+||-+|+...|++.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk-aiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK-AIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH-HhhcchhHHHHHHHHHHHhCcchh
Confidence 33345667777888999888777552 22233 33444456664 468999999999999999999854
No 455
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=37.50 E-value=1.8e+02 Score=22.11 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
++|+.++.+|++.|-.. +|...+ .-|.+|.++|.++++..|+
T Consensus 4 ~~A~~l~~~Av~~D~~g-----~y~eA~----~~Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 4 QKAIELVKKAIEEDNAG-----NYEEAL----RLYQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHHHHcC-----CHHHHH----HHHHHHHHHHHHHHhhCCC
Confidence 57777777777766542 122111 2255777788888877774
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=37.40 E-value=61 Score=36.28 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=58.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-----------------NYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~-----------------~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
.+--||.++...|+++.|-.+|-.||++|.-|.-... ..|..++...+||..|++..+. -
T Consensus 997 vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~---h 1073 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA---H 1073 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh---h
Confidence 4566899999999999999999999999876533221 1122222334566655544332 2
Q ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 238 NPS-DGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 238 dP~-d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
+|+ -++++..-|.-.+. .|++.+|+.++-||
T Consensus 1074 ~~~~l~dv~tgqar~aie-e~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1074 CEDLLADVLTGQARGAIE-EGDFLKAEGFLLRA 1105 (1636)
T ss_pred ChhhhHHHHhhhhhcccc-ccchhhhhhheeec
Confidence 222 35566666666677 78888888777655
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.83 E-value=2.6e+02 Score=30.15 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
..+.-....+.++|+.-. +..++..+++++. ...-++-..+|+|.++.+-+|...-..+|..|.+ .+..+|..+|
T Consensus 80 ~k~~~veh~c~~~l~~~e-~kmal~el~q~y~--en~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk--ik~sk~a~~f 154 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGE-SKMALLELLQCYK--ENGNEQLYSLWERLVEYDFNDVVIGRELADKYEK--IKKSKAAEFF 154 (711)
T ss_pred hHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH--hcCchhhHHHHHHHHHhcchhHHHHHHHHHHHHH--hchhhHHHHH
Confidence 344566677888887755 5777788888864 3466778889999999999999998999998775 7888888888
Q ss_pred HHHHHhC
Q 020109 267 DQAVKSA 273 (331)
Q Consensus 267 erALeld 273 (331)
.+|+...
T Consensus 155 ~Ka~yrf 161 (711)
T COG1747 155 GKALYRF 161 (711)
T ss_pred HHHHHHh
Confidence 8887653
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.57 E-value=1.8e+02 Score=23.79 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
-|.+.+. .||+.+|++.+.++-+..+...-.+...+..-..+|
T Consensus 65 ~Gl~al~-~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALA-EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3455555 788888888888887765555555554455544444
No 459
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.11 E-value=41 Score=37.67 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
.=+.|..+|+|++|.++.+.. |+.- -++...|.+++ ..++|..|.++|-+.+. ..-..+.-++. ..
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f-~~k~y~~AA~~yA~t~~-------~FEEVaLKFl~-~~ 430 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLF-QDKEYLRAAEIYAETLS-------SFEEVALKFLE-IN 430 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhh-------hHHHHHHHHHh-cC
Confidence 346778888888888776653 4432 25667888876 56888888888877732 22334555565 66
Q ss_pred CHHHHHHHHHHHHHhCC
Q 020109 258 DASRAESYFDQAVKSAP 274 (331)
Q Consensus 258 d~deAieyferALeldP 274 (331)
+.+.=..++.+=|+.-+
T Consensus 431 ~~~~L~~~L~KKL~~lt 447 (911)
T KOG2034|consen 431 QERALRTFLDKKLDRLT 447 (911)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 66644466666665554
No 460
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=35.86 E-value=29 Score=23.38 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC
Q 020109 243 NILSLYADLIWQAHK---DASRAESYFDQAVKSA 273 (331)
Q Consensus 243 ~vL~~lA~ll~~~~G---d~deAieyferALeld 273 (331)
...+.|||.+.+ -. +..+++.+++..++..
T Consensus 2 qt~FnyAw~Lv~-S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVK-SNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHhcc
Confidence 455677777766 43 3455666666655443
No 461
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.37 E-value=1.8e+02 Score=31.37 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
++..+.|....+.-+.-.......+..-|.++-+ .++-++|.++|++.+.-+|+ ..++.++.-+++.|-..+|...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4566777777777766666666666777887777 89999999999999999998 45667777777777766666544
Q ss_pred h
Q 020109 301 E 301 (331)
Q Consensus 301 e 301 (331)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 3
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.32 E-value=3.2e+02 Score=25.50 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNA-------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 190 ekA~e~yekALeldP~np-------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
+.|+..++..-+..+..- ..+--.|.+.+...|.+++|++.+++... +|+.......++.+..+
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 678877766544444320 11112244445567899999999999988 88888887777776665
No 463
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.07 E-value=91 Score=34.93 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=59.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH---HHHHH---HHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILS---LYADL---IWQA 255 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-----d~~vL~---~lA~l---l~~~ 255 (331)
+..+.|++.|++|.+..|.... -.|||.++.-....++..+++-.-+++++.- ...-+. ..|.+ ...
T Consensus 301 ~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL- 378 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL- 378 (1226)
T ss_pred hhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh-
Confidence 4567999999999999996432 2456666543333445555555555544431 111111 11221 123
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
.+|+.+|+..-++++++.|..=+.-..+..++.
T Consensus 379 And~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 589999999999999999866554444444443
No 464
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.76 E-value=96 Score=23.02 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhC
Q 020109 225 AKAEELCGRAILAN 238 (331)
Q Consensus 225 eeAee~~erAL~ld 238 (331)
++|..+..+|++.|
T Consensus 3 ~~A~~~~~~Av~~D 16 (69)
T PF04212_consen 3 DKAIELIKKAVEAD 16 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
No 465
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.56 E-value=71 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+.|+.+..+|++.|-. .+|... ..-|..|.++|.+++...|+
T Consensus 4 ~~a~~l~~~Av~~D~~-----g~~~~A----l~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 4 QQAKELIKQAVKEDED-----GNYEEA----LELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHc-----CCHHHH----HHHHHHHHHHHHHHhccCCC
Confidence 5667777777666554 222222 12255777777777777665
No 466
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.02 E-value=1.7e+02 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 020109 214 ARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erA 234 (331)
|.++|+..|+.++|.+.|+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 344566677777777766543
No 467
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.01 E-value=1.7e+02 Score=22.79 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 224 yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
..+|.+++.+|++.|-.-- |..+ ..-|.+|+++|.++++..|+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~-----y~eA----l~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGR-----FQEA----LVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHHHhcc-----HHHH----HHHHHHHHHHHHHHHhhCCCHH
Confidence 3467777777766542211 1111 1223456666667777777444
No 468
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=33.68 E-value=1.2e+02 Score=18.91 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 228 EELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 228 ee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.++..+++..+|.|..++...-++
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~l 26 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWL 26 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHH
Confidence 344555555555555554444333
No 469
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.99 E-value=1.1e+02 Score=23.79 Aligned_cols=11 Identities=36% Similarity=0.259 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 020109 226 KAEELCGRAIL 236 (331)
Q Consensus 226 eAee~~erAL~ 236 (331)
+|..++.+|+.
T Consensus 5 ~Ai~lv~~Av~ 15 (75)
T cd02684 5 KAIALVVQAVK 15 (75)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 470
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.89 E-value=2.8e+02 Score=28.44 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
.+|++-+..+.+++. .+++.++..++..++-+.|+...+...|+..
T Consensus 211 ~npYv~Yl~~lf~a~-n~dv~kg~~~~~e~~gi~qd~~~~~~qY~~~ 256 (449)
T COG3014 211 LNPYVSYLSGLFYAL-NGDVNKGLGYLNEAYGISQDQSPFVAQYLVF 256 (449)
T ss_pred chHHHHHHHHHhccc-CccHhHHHHHHHHHhccCchhhHHHHHhcce
Confidence 467777777777777 7888888888888888888766665555544
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.54 E-value=1.4e+02 Score=24.41 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=27.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
..||+.+|++...++-+..+..+-.+...|.+... +||
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~-~gd 108 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA-QGD 108 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCC
Confidence 57999999999999977755555555555666665 554
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.37 E-value=15 Score=38.70 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--LANPS-DGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
..|..|+++|=...+.....+...|.-.+...|++..|...+.+.- .++|. ........|.+.+. .++.++|+..+
T Consensus 6 ~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~-~~~~~~Al~~L 84 (536)
T PF04348_consen 6 QAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALA-QGDPEQALSLL 84 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHh-cCCHHHHHHHh
Confidence 4566677777776665444444444333346799999999888776 34443 33344556777787 89999999988
Q ss_pred HH--HHHhCC-CCHHHHHHHHHHHHHcCCchHHHh
Q 020109 267 DQ--AVKSAP-DDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 267 er--ALeldP-dna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.. ...+.+ .....+...+.++...++.-++..
T Consensus 85 ~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~ 119 (536)
T PF04348_consen 85 NAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAAR 119 (536)
T ss_dssp -----------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 74 222222 222344455777777777766664
No 473
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=31.91 E-value=2.5e+02 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++...+++-..++++.+|+||.+|..|
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~ 47 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAY 47 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 344445555555566666666554444
No 474
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=31.76 E-value=3.2e+02 Score=31.37 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=63.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 200 IEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 200 LeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
++...+++.++..+..+ +....+.+|+..|..+.. +-+....++..|+..+.+ ++.+.+|.++|...++..-...
T Consensus 72 lk~Y~nD~Rfl~~~~~~--~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~-k~~~keA~~v~q~Giq~~aeP~ 148 (974)
T KOG1166|consen 72 LKRYRNDPRFLILWCSL--ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLER-KEYFKEAKEVFQLGIQNKAEPL 148 (974)
T ss_pred hhhccccHHHHHHHHhH--HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCH
Confidence 45566666644443321 245677888888888764 445566777788888888 9999999999999999976444
Q ss_pred -HHHHHHHHHHHHcCCc
Q 020109 278 -YVLASYAKFLWDAGED 293 (331)
Q Consensus 278 -~vl~~lA~~L~klG~~ 293 (331)
.+..++..+..++++.
T Consensus 149 ~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 149 ERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 4555666666666554
No 475
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.40 E-value=2e+02 Score=32.41 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~-ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
.+....||..+| .+|++++|..+|-++|. ++|. ++...+ .+ ..+..+=..|++.+.+..-.+.+--.-+-.
T Consensus 368 ~~i~~kYgd~Ly-~Kgdf~~A~~qYI~tI~~le~s--~Vi~kf----Ld-aq~IknLt~YLe~L~~~gla~~dhttlLLn 439 (933)
T KOG2114|consen 368 AEIHRKYGDYLY-GKGDFDEATDQYIETIGFLEPS--EVIKKF----LD-AQRIKNLTSYLEALHKKGLANSDHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHcccCChH--HHHHHh----cC-HHHHHHHHHHHHHHHHcccccchhHHHHHH
Confidence 445678888887 57999999999988874 3332 221111 22 233344445555555555555555555566
Q ss_pred HHHHcCCch
Q 020109 286 FLWDAGEDE 294 (331)
Q Consensus 286 ~L~klG~~e 294 (331)
||.++++.+
T Consensus 440 cYiKlkd~~ 448 (933)
T KOG2114|consen 440 CYIKLKDVE 448 (933)
T ss_pred HHHHhcchH
Confidence 666666543
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.12 E-value=65 Score=23.94 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+++|..+..+|++.|... +|...+ .-|.+|.+++.+++...++
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~~A~----~~Y~~ai~~l~~~~~~~~~ 44 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYEEAL----ELYKEAIEYLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHHHHH----HHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 367788888888776532 111111 1244667777777777753
No 477
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=3.1e+02 Score=28.13 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=63.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCC---CHHHHHH--HHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHH-c
Q 020109 185 NNHGSSSTDAYYEKMIEANPG---NALLLGN--YARFLKEVRGDFAK--AEELCGRAILANPSDGNILSLYADLIWQA-H 256 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~---npeal~~--yA~lLy~~~Gdyee--Aee~~erAL~ldP~d~~vL~~lA~ll~~~-~ 256 (331)
..++|..|-.||-+|++-... +..++.. |-.++.-+.+..++ +.---..+++.+..+.+++...|.++.+. .
T Consensus 221 ~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSL 300 (411)
T KOG1463|consen 221 AEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSL 300 (411)
T ss_pred cccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcH
Confidence 448999999999999986332 2455443 33333334455544 55555677888888999999888887441 4
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 020109 257 KDASRAESYFDQAVKSAP 274 (331)
Q Consensus 257 Gd~deAieyferALeldP 274 (331)
.+|+.|+.-|.+-+.-||
T Consensus 301 kdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 301 KDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhHHHHhcCh
Confidence 789999999998888877
No 478
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=30.56 E-value=1.4e+02 Score=26.28 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+.+..|-.- +...-+.+.|+++|+.+++..|++.-++..|...+-.
T Consensus 76 ~EaLRDfq~~-~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 76 SEALRDFQCS-WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHHHHHHH-HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 4555544332 3455678889999999999999998887766665443
No 479
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=30.04 E-value=50 Score=30.68 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020109 207 ALLLGNYARFLKEVRGD 223 (331)
Q Consensus 207 peal~~yA~lLy~~~Gd 223 (331)
|+-...++.+++.-++|
T Consensus 50 p~evvelg~flh~Cegd 66 (215)
T KOG3262|consen 50 PEEVVELGKFLHMCEGD 66 (215)
T ss_pred chhhhhhhhhhhhcCCc
Confidence 33344556666533333
No 480
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=29.97 E-value=2e+02 Score=31.05 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 206 NALLLGNYARFLKEVR--GDFAKAEELCGRAILA-----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 206 npeal~~yA~lLy~~~--GdyeeAee~~erAL~l-----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.|.++.+||.+- +.. .+-..++++|.+||.. +-.+.+-+..+|-.+++ .++|.+|+.++..|-+.
T Consensus 276 YPmALg~LadLe-Ei~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLADLE-EIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHHHH-HHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHH-hhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 566777777663 222 3345678889998854 33456667778888888 99999999888776444
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.91 E-value=3e+02 Score=28.07 Aligned_cols=77 Identities=18% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-------ILSLYADLIWQAHKDASRAESYFD--QAVKSAPDDCYVLA 281 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-------vL~~lA~ll~~~~Gd~deAieyfe--rALeldPdna~vl~ 281 (331)
..++..++ ..++|..|.+.|+.++...+..-. ....-|..+|+ .-++++|.++++ ..-+........+.
T Consensus 134 ~~~~r~l~-n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 134 QGYARRAI-NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHH-HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhccchhhhhhhhhhhh
Q ss_pred HHHHHHHH
Q 020109 282 SYAKFLWD 289 (331)
Q Consensus 282 ~lA~~L~k 289 (331)
.+-.+...
T Consensus 212 ~~~~l~~~ 219 (380)
T TIGR02710 212 ELEDVIKR 219 (380)
T ss_pred HHHHHHHh
No 482
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.62 E-value=2.8e+02 Score=21.74 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
..|+.+..+|++.|.. .+|...+.. |.+|.++|-.++...-.|+..+..+ ..-.. +|++||
T Consensus 4 ~~Ai~~a~~Ave~D~~-----g~y~eA~~~----Y~~aie~l~~~~~~~~~n~~~k~~i-r~K~~---------eYl~RA 64 (76)
T cd02681 4 RDAVQFARLAVQRDQE-----GRYSEAVFY----YKEAAQLLIYAEMAGTLNDSHLKTI-QEKSN---------EYLDRA 64 (76)
T ss_pred HHHHHHHHHHHHHHHc-----cCHHHHHHH----HHHHHHHHHHHHHhcCCChHHHHHH-HHHHH---------HHHHHH
Q ss_pred HHh
Q 020109 270 VKS 272 (331)
Q Consensus 270 Lel 272 (331)
-++
T Consensus 65 E~L 67 (76)
T cd02681 65 QAL 67 (76)
T ss_pred HHH
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.20 E-value=27 Score=38.76 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYA 249 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeld-------P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA 249 (331)
|+-..|....+|+..+..-+..-++- -.+..+++.+|.--....||.++|+...-.+++.+-. .|+.+.+.|
T Consensus 206 nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~G 285 (1226)
T KOG4279|consen 206 NLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCG 285 (1226)
T ss_pred HHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeec
Q ss_pred HHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 250 DLIWQAH---------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 250 ~ll~~~~---------Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
.+|-. + +..+.|+++|.+|++..| ..+.-.+++.++...|+.=|--.+++.+.
T Consensus 286 RIYKD-mF~~S~ytDa~s~~~a~~WyrkaFeveP-~~~sGIN~atLL~aaG~~Fens~Elq~Ig 347 (1226)
T KOG4279|consen 286 RIYKD-MFIASNYTDAESLNHAIEWYRKAFEVEP-LEYSGINLATLLRAAGEHFENSLELQQIG 347 (1226)
T ss_pred hhhhh-hhhccCCcchhhHHHHHHHHHHHhccCc-hhhccccHHHHHHHhhhhccchHHHHHHH
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.00 E-value=3.6e+02 Score=30.92 Aligned_cols=120 Identities=7% Similarity=-0.016 Sum_probs=0.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA-------NPGNALLLGNYARFLKEVR-----------------GDFAKAEELCGR 233 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel-------dP~npeal~~yA~lLy~~~-----------------GdyeeAee~~er 233 (331)
+-|.-+.+.|++.+|+++|+.+|-. +..+....-.+-.+..+.. .+.-+-..||-.
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~ 1075 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTH 1075 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhc
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 234 AL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+-..-+....++...-..+++ .+++..|..+-.+.+++.|..+.+....-..-..-.+..+|.+
T Consensus 1076 ~~Lqp~H~ilalrtA~n~ffK-~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~ 1139 (1202)
T KOG0292|consen 1076 CKLQPMHRILALRTAMNVFFK-LKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYE 1139 (1202)
T ss_pred CCCCcHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccc
No 485
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.39 E-value=3e+02 Score=28.01 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
.+|+++..+|+..|.. -+|...+.. |..|.+||..+|+..-++..+....-.-+.+-..+.++-.+|++.
T Consensus 8 ~kaI~lv~kA~~eD~a-----~nY~eA~~l----Y~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 8 QKAIDLVKKAIDEDNA-----KNYEEALRL----YQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHhhhcch-----hchHHHHHH----HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=27.44 E-value=49 Score=25.98 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 020109 147 GGGLGNNGGKICDGRGGGDAG 167 (331)
Q Consensus 147 ~~g~~~~~~~~~gg~~~~~~~ 167 (331)
|=||-+++||.|+++|+.=+|
T Consensus 44 gCGgcggcgG~c~~~g~rCgG 64 (79)
T TIGR03601 44 GCGGGGCCGGRCGGCGGRCGG 64 (79)
T ss_pred CCCCCCCCCCCcCCcCccccC
No 487
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=27.31 E-value=51 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020109 146 MGGGLGNNGGKICDGRGGGDAGGGGGGS 173 (331)
Q Consensus 146 ~~~g~~~~~~~~~gg~~~~~~~~~~~~~ 173 (331)
|+|+||+.|||.+++++++..+++-.+.
T Consensus 1 ~~grggg~ggg~g~~~~~~e~~~dphk~ 28 (494)
T KOG1456|consen 1 MQGRGGGHGGGDGPKRYRREDNADPHKP 28 (494)
T ss_pred CCCCCCCCCCCCCCccCCcccCCCCCCC
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.25 E-value=5.1e+02 Score=24.21 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 224 FAKAEELCGRAILANPSD--------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 224 yeeAee~~erAL~ldP~d--------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eE 295 (331)
.+.|.-.++..-+-.|.. -.+......++.+ .|.+++|++.+++... +|++......++.+......++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~-~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCME-NGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
No 489
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.14 E-value=2.7e+02 Score=20.85 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
+++|..+..+|++.|- ...+...+.. |.+|.++|.+++...|+...--.....+..- ..+.++-...+..
T Consensus 5 ~~~A~~li~~Av~~d~-----~g~~~eAl~~----Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~ey-l~raE~lk~~~~~ 74 (77)
T smart00745 5 LSKAKELISKALKADE-----AGDYEEALEL----YKKAIEYLLEGIKVESDSKRREAVKAKAAEY-LDRAEEIKKSLLE 74 (77)
T ss_pred HHHHHHHHHHHHHHHH-----cCCHHHHHHH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhh
No 490
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=27.00 E-value=57 Score=29.90 Aligned_cols=29 Identities=55% Similarity=1.093 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 020109 147 GGGLGNNGGKICDGRGGGDAGGGGGGSGF 175 (331)
Q Consensus 147 ~~g~~~~~~~~~gg~~~~~~~~~~~~~~~ 175 (331)
.+|+++++|++.|+.|+..|++.+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (186)
T PRK07772 123 GGGGGGGGGGFGGGGGGSGGGGGGGGGGG 151 (186)
T ss_pred CCCCCCCCCCccCccCCCCCCcCCCCCcc
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.56 E-value=1.4e+02 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+.-+...|.-+=+ .|+|++|+.+|..+++.
T Consensus 6 Ai~~a~~Ave~D~-~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQ-EGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
No 492
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=5.2e+02 Score=26.38 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------h
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN------ILSLYADLIWQAHKDASRAESYFDQAVK-------S 272 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~------vL~~lA~ll~~~~Gd~deAieyferALe-------l 272 (331)
||.-+..++....+...|.++|.+++++.+..--..-+ .....|.++.. .+|.+++.+.++..-+ .
T Consensus 73 Nplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~~ld~~~~v 151 (380)
T KOG2908|consen 73 NPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKSMLDSLDGV 151 (380)
T ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccCC
Q ss_pred CCCCHHHHHHHHHHHHH
Q 020109 273 APDDCYVLASYAKFLWD 289 (331)
Q Consensus 273 dPdna~vl~~lA~~L~k 289 (331)
.|.-..-+|.++--|++
T Consensus 152 ~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 152 TSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ChhhhhhHHHHHHHHHH
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.94 E-value=3.5e+02 Score=23.03 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 204 PGNALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~Gd-------yeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
|+.-..|-+|-...|+..+. .++-+++++++-..+-.-|. ++..++.+|-. .|+-+.|..-|+.--.+.|+
T Consensus 26 pKslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 26 PKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPE 104 (121)
T ss_pred CccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCcc
Q ss_pred CHHHHHHHHHHHHHcCC
Q 020109 276 DCYVLASYAKFLWDAGE 292 (331)
Q Consensus 276 na~vl~~lA~~L~klG~ 292 (331)
+. .+.+|+++.++
T Consensus 105 S~----~fmDFLmk~~k 117 (121)
T COG4259 105 SG----VFMDFLMKNGK 117 (121)
T ss_pred ch----hHHHHHHHccc
No 494
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=24.87 E-value=85 Score=25.54 Aligned_cols=27 Identities=41% Similarity=0.694 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020109 147 GGGLGNNGGKICDGRGGGDAGGGGGGS 173 (331)
Q Consensus 147 ~~g~~~~~~~~~gg~~~~~~~~~~~~~ 173 (331)
.+|+|+++++-++++.++.+++.+.+.
T Consensus 59 ~~G~G~gg~ggGg~~~G~~g~g~G~~~ 85 (91)
T PF10961_consen 59 SGGGGGGGGGGGGRGMGGGGGGGGPSP 85 (91)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
No 495
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=24.79 E-value=60 Score=30.93 Aligned_cols=29 Identities=41% Similarity=0.809 Sum_probs=0.0
Q ss_pred EeecCCCCCCC---------CCCCCCCCCCCCCCCCCCC
Q 020109 144 MVMGGGLGNNG---------GKICDGRGGGDAGGGGGGS 173 (331)
Q Consensus 144 ~~~~~g~~~~~---------~~~~gg~~~~~~~~~~~~~ 173 (331)
.+-|||||+++ -..||| |+|.-.|-+|+.
T Consensus 150 aIAgGGGGGgg~~~~~~~~~~~~~GG-GGGRPfG~gG~~ 187 (260)
T PF05268_consen 150 AIAGGGGGGGGASYQNSWQGNLTFGG-GGGRPFGAGGSG 187 (260)
T ss_pred EEecCCCCccccccCCCcccceeecC-CCCCccCCCCCc
No 496
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.38 E-value=1.8e+02 Score=28.88 Aligned_cols=103 Identities=8% Similarity=0.126 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCCHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGNILSLYADLI------WQAHKDAS 260 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP~d~~vL~~lA~ll------~~~~Gd~d 260 (331)
.+.-..+...+++-+|++.-+|..--.++. .. .++..-..+.++.+..|+.|..++..--+++ +. -.++.
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le-~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k 167 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLE-LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLK 167 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHH-hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHH
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCc
Q 020109 261 RAESYFDQAVKSAPDDCYVLASY---AKFLWDAGED 293 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~l---A~~L~klG~~ 293 (331)
+-.+|-.-++..++.|..+|.+. -......|++
T Consensus 168 ~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 168 HELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
No 497
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=24.33 E-value=73 Score=27.69 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
.+.+|..||+ .++|++|..+++.+. ...+.++..|+.++..-.+.+|...+
T Consensus 77 ~yllAksyFD-~kEy~RaA~~L~~~~---s~~~~FL~lYs~YLa~EKr~~Ee~~~ 127 (142)
T PF04049_consen 77 KYLLAKSYFD-CKEYDRAAHVLKDCK---SPKALFLRLYSRYLAGEKRKEEEMEE 127 (142)
T ss_pred HHHHHHHHhc-hhHHHHHHHHHccCC---CchHHHHHHHHHHHHHHHHHhhhhHh
No 498
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=2.1e+02 Score=28.70 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 223 DFAKAEELCGRAILANPSDGN----ILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 223 dyeeAee~~erAL~ldP~d~~----vL~~lA~ll~~~~Gd~deAieyferALe 271 (331)
+.++|+.-|++++++.+...+ ++..+-.+.++ .++|++..++|.+++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
No 499
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=5.8e+02 Score=26.70 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHh----------CCC
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI---WQAHKDASRAESYFDQAVKS----------APD 275 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll---~~~~Gd~deAieyferALel----------dPd 275 (331)
++..|+.. |...|+.+.|.++|-|+-....+-..+..++-.+. +. .+++-....|..+|... -|.
T Consensus 152 a~~Dl~dh-y~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~-~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 152 ALEDLGDH-YLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIY-MGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHH-HHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh-hcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHHcCCchHHHh
Q 020109 276 DCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 276 na~vl~~lA~~L~klG~~eEa~~ 298 (331)
.......++.+..+ +|..|.+
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~ 250 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAK 250 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHH
No 500
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.12 E-value=6e+02 Score=23.88 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHH-----------
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-----EVRGDFAKAEELCGRAILANPSDGN----------- 243 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy-----~~~GdyeeAee~~erAL~ldP~d~~----------- 243 (331)
+.+...++++++|...+.+|.+.-..-...+..+..+++ ...+.|.+|..+|.-.-...-..++
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yil 115 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYIL 115 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHH
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 244 -------ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 244 -------vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
=+..++..... .+++++|..+|+-+-++
T Consensus 116 Gl~D~vGELrR~~le~l~-~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 116 GLADAVGELRRHVLELLR-KGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Done!