Query 020109
Match_columns 331
No_of_seqs 176 out of 1243
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 8.8E-18 3E-22 137.3 15.9 110 176-287 16-125 (126)
2 4ga2_A E3 SUMO-protein ligase 99.7 1.2E-18 3.9E-23 145.8 6.9 118 178-297 2-119 (150)
3 4ga2_A E3 SUMO-protein ligase 99.7 1.4E-17 4.9E-22 139.1 13.5 118 173-292 31-149 (150)
4 2pl2_A Hypothetical conserved 99.7 2.9E-17 1E-21 144.3 15.5 125 175-301 7-142 (217)
5 3vtx_A MAMA; tetratricopeptide 99.7 1.3E-16 4.3E-21 133.8 16.6 128 172-301 4-165 (184)
6 2pl2_A Hypothetical conserved 99.7 3.4E-17 1.2E-21 143.9 12.8 127 172-301 72-209 (217)
7 4gyw_A UDP-N-acetylglucosamine 99.7 7.9E-17 2.7E-21 169.2 17.9 127 173-301 9-135 (723)
8 3vtx_A MAMA; tetratricopeptide 99.7 9.2E-16 3.1E-20 128.5 17.7 104 173-278 73-176 (184)
9 2lni_A Stress-induced-phosphop 99.7 4.3E-16 1.5E-20 121.6 14.3 120 171-292 14-133 (133)
10 2vyi_A SGTA protein; chaperone 99.7 1.6E-15 5.5E-20 117.0 16.9 118 175-294 14-131 (131)
11 4gyw_A UDP-N-acetylglucosamine 99.7 3E-16 1E-20 164.8 17.0 128 172-301 42-169 (723)
12 3upv_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 121.3 15.7 113 176-290 7-125 (126)
13 4i17_A Hypothetical protein; T 99.7 1.1E-15 3.8E-20 132.5 17.0 127 173-301 7-141 (228)
14 3urz_A Uncharacterized protein 99.7 6.2E-16 2.1E-20 135.0 13.9 117 176-294 7-139 (208)
15 3sz7_A HSC70 cochaperone (SGT) 99.7 9.4E-16 3.2E-20 127.6 14.3 116 173-290 11-126 (164)
16 1a17_A Serine/threonine protei 99.7 2.2E-15 7.5E-20 122.2 16.0 124 176-301 16-141 (166)
17 2fo7_A Synthetic consensus TPR 99.7 4.1E-15 1.4E-19 114.3 16.3 125 176-302 4-128 (136)
18 3gyz_A Chaperone protein IPGC; 99.7 1.5E-15 5.1E-20 129.5 14.9 104 172-277 35-138 (151)
19 3as5_A MAMA; tetratricopeptide 99.7 7.7E-15 2.6E-19 119.4 18.0 128 173-302 42-169 (186)
20 3gyz_A Chaperone protein IPGC; 99.7 8.7E-17 3E-21 137.1 6.5 112 188-301 17-128 (151)
21 2h6f_A Protein farnesyltransfe 99.6 1.5E-15 5.2E-20 147.6 15.2 128 172-301 96-224 (382)
22 1na0_A Designed protein CTPR3; 99.6 1.5E-14 5.3E-19 110.5 17.0 116 174-291 10-125 (125)
23 2xcb_A PCRH, regulatory protei 99.6 2.1E-15 7.1E-20 123.5 12.6 115 174-290 19-133 (142)
24 2vgx_A Chaperone SYCD; alterna 99.6 2.2E-15 7.5E-20 126.0 12.9 107 173-281 21-127 (148)
25 1p5q_A FKBP52, FK506-binding p 99.6 3.2E-15 1.1E-19 141.0 15.6 122 175-298 149-285 (336)
26 1elw_A TPR1-domain of HOP; HOP 99.6 1.3E-14 4.6E-19 110.1 15.6 111 176-288 7-117 (118)
27 4i17_A Hypothetical protein; T 99.6 2.5E-15 8.4E-20 130.3 12.6 119 173-293 42-169 (228)
28 2q7f_A YRRB protein; TPR, prot 99.6 2E-14 7E-19 123.1 18.0 128 173-302 57-184 (243)
29 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-14 6.3E-19 123.4 17.1 128 173-302 91-218 (243)
30 3uq3_A Heat shock protein STI1 99.6 1.4E-14 4.7E-19 124.6 15.7 127 174-302 80-232 (258)
31 4eqf_A PEX5-related protein; a 99.6 8.8E-15 3E-19 134.6 15.4 128 174-303 178-307 (365)
32 2vgx_A Chaperone SYCD; alterna 99.6 1.6E-15 5.6E-20 126.7 9.5 107 193-301 7-113 (148)
33 3q49_B STIP1 homology and U bo 99.6 7.1E-15 2.4E-19 116.7 12.8 119 172-292 8-131 (137)
34 3as5_A MAMA; tetratricopeptide 99.6 1E-14 3.6E-19 118.6 14.0 126 175-302 10-135 (186)
35 3rkv_A Putative peptidylprolyl 99.6 2.9E-15 1E-19 124.4 10.9 116 176-293 14-148 (162)
36 2fbn_A 70 kDa peptidylprolyl i 99.6 9E-15 3.1E-19 125.3 14.2 121 175-297 40-176 (198)
37 4gcn_A Protein STI-1; structur 99.6 1.5E-14 5E-19 117.7 14.2 105 176-283 11-122 (127)
38 3u4t_A TPR repeat-containing p 99.6 7.7E-15 2.6E-19 128.6 13.3 126 173-301 3-132 (272)
39 2e2e_A Formate-dependent nitri 99.6 5.5E-15 1.9E-19 123.6 11.3 115 185-301 22-139 (177)
40 4gco_A Protein STI-1; structur 99.6 8E-15 2.7E-19 119.6 11.8 102 198-301 4-105 (126)
41 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2E-14 7E-19 122.3 14.8 122 176-302 9-146 (213)
42 1fch_A Peroxisomal targeting s 99.6 2.6E-14 9E-19 130.2 16.0 125 174-300 218-353 (368)
43 2vq2_A PILW, putative fimbrial 99.6 4.9E-14 1.7E-18 118.7 16.4 122 177-300 12-136 (225)
44 2h6f_A Protein farnesyltransfe 99.6 7.5E-15 2.6E-19 142.7 12.9 125 171-297 129-255 (382)
45 2vq2_A PILW, putative fimbrial 99.6 4.4E-14 1.5E-18 119.0 16.0 127 174-302 43-172 (225)
46 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-14 1.5E-18 122.7 16.3 128 173-302 71-200 (252)
47 2xev_A YBGF; tetratricopeptide 99.6 7.9E-14 2.7E-18 109.6 16.3 116 175-292 4-125 (129)
48 2xcb_A PCRH, regulatory protei 99.6 5.7E-15 2E-19 120.9 10.0 107 193-301 4-110 (142)
49 1hxi_A PEX5, peroxisome target 99.6 1.2E-14 4.2E-19 117.5 11.8 102 175-278 19-120 (121)
50 1w3b_A UDP-N-acetylglucosamine 99.6 2.3E-14 7.9E-19 133.2 15.2 128 172-301 236-363 (388)
51 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-14 1.3E-18 123.1 15.5 128 173-302 37-166 (252)
52 2dba_A Smooth muscle cell asso 99.6 3.5E-14 1.2E-18 112.9 14.0 116 171-288 26-144 (148)
53 2vsy_A XCC0866; transferase, g 99.6 2.9E-14 9.9E-19 141.7 16.0 129 172-302 22-153 (568)
54 3cv0_A Peroxisome targeting si 99.6 7.2E-14 2.4E-18 124.3 16.7 128 172-301 171-310 (327)
55 3uq3_A Heat shock protein STI1 99.6 2.8E-14 9.5E-19 122.7 13.4 129 172-302 37-198 (258)
56 3hym_B Cell division cycle pro 99.6 5.3E-14 1.8E-18 125.3 15.5 131 172-304 89-220 (330)
57 1w3b_A UDP-N-acetylglucosamine 99.6 7.2E-14 2.4E-18 129.9 17.0 127 173-301 203-329 (388)
58 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.9E-14 6.4E-19 141.6 13.7 123 175-299 270-407 (457)
59 4eqf_A PEX5-related protein; a 99.6 7.4E-14 2.5E-18 128.4 16.2 126 174-301 100-271 (365)
60 2pzi_A Probable serine/threoni 99.6 1.2E-14 4.1E-19 150.0 11.9 128 171-301 431-558 (681)
61 4abn_A Tetratricopeptide repea 99.6 1.2E-14 4E-19 143.3 11.3 126 173-301 137-282 (474)
62 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.5E-18 120.3 16.5 126 173-301 43-168 (275)
63 1elr_A TPR2A-domain of HOP; HO 99.6 7.5E-14 2.6E-18 107.8 13.3 114 176-292 7-127 (131)
64 4abn_A Tetratricopeptide repea 99.5 1.6E-14 5.5E-19 142.3 11.8 127 172-301 101-245 (474)
65 3hym_B Cell division cycle pro 99.5 1.1E-13 3.7E-18 123.3 16.0 126 174-301 160-294 (330)
66 2kck_A TPR repeat; tetratricop 99.5 1.3E-13 4.4E-18 104.0 13.4 103 172-276 5-110 (112)
67 2yhc_A BAMD, UPF0169 lipoprote 99.5 8.6E-14 3E-18 122.2 14.2 127 175-302 43-209 (225)
68 1fch_A Peroxisomal targeting s 99.5 1.3E-13 4.3E-18 125.7 15.4 124 177-303 186-311 (368)
69 1ihg_A Cyclophilin 40; ppiase 99.5 3.9E-14 1.3E-18 136.5 12.4 123 176-300 226-364 (370)
70 3u4t_A TPR repeat-containing p 99.5 7.9E-14 2.7E-18 122.1 13.2 124 176-301 77-203 (272)
71 3ieg_A DNAJ homolog subfamily 99.5 1.9E-13 6.4E-18 122.5 15.8 126 175-302 5-145 (359)
72 2r5s_A Uncharacterized protein 99.5 3.5E-14 1.2E-18 120.0 10.2 124 176-301 9-132 (176)
73 1wao_1 Serine/threonine protei 99.5 1.8E-14 6.1E-19 143.1 9.5 125 175-301 8-134 (477)
74 3k9i_A BH0479 protein; putativ 99.5 2.3E-14 7.8E-19 113.6 8.3 106 186-293 3-111 (117)
75 2r5s_A Uncharacterized protein 99.5 3.2E-14 1.1E-18 120.1 9.1 129 171-301 38-168 (176)
76 2e2e_A Formate-dependent nitri 99.5 1.7E-13 5.7E-18 114.5 12.9 109 172-281 43-153 (177)
77 3qky_A Outer membrane assembly 99.5 2E-13 7E-18 121.1 14.1 131 171-302 13-173 (261)
78 3ieg_A DNAJ homolog subfamily 99.5 3.1E-13 1.1E-17 121.0 15.2 127 173-301 37-178 (359)
79 3mkr_A Coatomer subunit epsilo 99.5 5.1E-13 1.7E-17 123.5 17.0 125 172-297 129-254 (291)
80 3urz_A Uncharacterized protein 99.5 1.1E-13 3.8E-18 120.6 11.7 124 175-301 56-181 (208)
81 3qky_A Outer membrane assembly 99.5 1.6E-13 5.4E-18 121.8 12.8 127 173-301 52-219 (261)
82 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-13 4.4E-18 120.3 11.6 117 185-303 17-137 (275)
83 3cv0_A Peroxisome targeting si 99.5 3.6E-13 1.2E-17 119.8 14.0 118 183-302 148-265 (327)
84 2kck_A TPR repeat; tetratricop 99.5 2.7E-13 9.3E-18 102.2 10.9 98 202-301 1-101 (112)
85 3upv_A Heat shock protein STI1 99.5 5.4E-13 1.9E-17 105.6 13.2 97 204-302 1-97 (126)
86 3qou_A Protein YBBN; thioredox 99.5 1.9E-13 6.4E-18 125.6 11.8 127 173-301 117-243 (287)
87 3fp2_A TPR repeat-containing p 99.5 5.3E-13 1.8E-17 127.8 15.5 127 174-302 277-403 (537)
88 2y4t_A DNAJ homolog subfamily 99.5 1E-12 3.6E-17 123.2 16.7 128 172-301 210-353 (450)
89 2ond_A Cleavage stimulation fa 99.5 4E-13 1.4E-17 123.4 13.4 129 172-301 98-227 (308)
90 2vsy_A XCC0866; transferase, g 99.5 3.5E-13 1.2E-17 133.9 13.7 113 187-301 3-115 (568)
91 2y4t_A DNAJ homolog subfamily 99.5 1.3E-12 4.6E-17 122.5 16.5 129 172-302 25-168 (450)
92 2hr2_A Hypothetical protein; a 99.5 2.2E-13 7.6E-18 119.2 10.5 111 176-288 14-147 (159)
93 3q49_B STIP1 homology and U bo 99.5 1.7E-12 5.9E-17 102.8 14.6 100 201-302 3-102 (137)
94 2xpi_A Anaphase-promoting comp 99.5 1.5E-12 5E-17 127.0 17.1 129 173-303 373-501 (597)
95 3edt_B KLC 2, kinesin light ch 99.5 2.3E-13 7.8E-18 117.9 10.1 128 174-303 44-195 (283)
96 2xpi_A Anaphase-promoting comp 99.5 1.3E-12 4.4E-17 127.4 16.5 125 175-301 443-574 (597)
97 1qqe_A Vesicular transport pro 99.5 5.4E-13 1.9E-17 122.1 12.9 126 174-301 78-223 (292)
98 3sz7_A HSC70 cochaperone (SGT) 99.4 1E-12 3.5E-17 109.2 13.3 97 203-301 7-103 (164)
99 2yhc_A BAMD, UPF0169 lipoprote 99.4 8.6E-13 2.9E-17 115.8 12.3 126 175-301 6-171 (225)
100 1zu2_A Mitochondrial import re 99.4 4E-13 1.4E-17 117.5 9.9 101 184-286 13-134 (158)
101 2if4_A ATFKBP42; FKBP-like, al 99.4 1.7E-13 5.8E-18 129.5 7.7 124 176-301 182-323 (338)
102 3edt_B KLC 2, kinesin light ch 99.4 6.3E-13 2.2E-17 115.1 10.6 127 173-301 85-276 (283)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3E-12 1E-16 108.8 14.6 104 173-278 37-156 (213)
104 3fp2_A TPR repeat-containing p 99.4 2E-12 6.7E-17 123.8 14.2 125 175-302 245-369 (537)
105 2kat_A Uncharacterized protein 99.4 1.7E-12 5.6E-17 101.7 11.0 102 190-293 2-105 (115)
106 2c2l_A CHIP, carboxy terminus 99.4 4.1E-13 1.4E-17 123.1 8.4 101 174-276 5-105 (281)
107 3qou_A Protein YBBN; thioredox 99.4 8.5E-13 2.9E-17 121.2 9.9 129 171-301 149-279 (287)
108 1p5q_A FKBP52, FK506-binding p 99.4 2.7E-13 9.3E-18 127.8 6.7 114 186-301 126-254 (336)
109 2gw1_A Mitochondrial precursor 99.4 1.5E-12 5.1E-17 123.3 10.9 129 173-303 270-398 (514)
110 2fo7_A Synthetic consensus TPR 99.4 8.5E-12 2.9E-16 95.6 13.0 101 174-276 36-136 (136)
111 2pzi_A Probable serine/threoni 99.4 2.4E-12 8.1E-17 132.8 12.9 115 184-301 402-524 (681)
112 2ond_A Cleavage stimulation fa 99.4 4.5E-12 1.6E-16 116.3 13.0 126 175-301 136-265 (308)
113 4gcn_A Protein STI-1; structur 99.4 6E-12 2.1E-16 102.2 12.0 94 206-301 7-107 (127)
114 2gw1_A Mitochondrial precursor 99.4 2.1E-12 7.3E-17 122.3 10.6 129 172-302 303-440 (514)
115 2lni_A Stress-induced-phosphop 99.3 7.9E-12 2.7E-16 97.1 11.6 98 203-302 12-109 (133)
116 3nf1_A KLC 1, kinesin light ch 99.3 2.8E-12 9.6E-17 113.1 9.8 127 173-301 111-302 (311)
117 1hxi_A PEX5, peroxisome target 99.3 9.2E-12 3.2E-16 100.4 11.9 90 210-301 20-109 (121)
118 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-12 1E-16 112.9 9.6 128 174-303 70-221 (311)
119 2l6j_A TPR repeat-containing p 99.3 5.5E-12 1.9E-16 96.2 9.8 94 206-301 3-102 (111)
120 3ro3_A PINS homolog, G-protein 99.3 5.9E-12 2E-16 99.5 10.3 125 175-301 11-153 (164)
121 2vyi_A SGTA protein; chaperone 99.3 1.2E-11 4E-16 95.1 11.7 100 201-302 6-105 (131)
122 4g1t_A Interferon-induced prot 99.3 8.9E-12 3E-16 118.2 13.3 125 177-301 140-271 (472)
123 3mkr_A Coatomer subunit epsilo 99.3 1.6E-11 5.5E-16 113.4 14.6 125 172-302 100-225 (291)
124 1elw_A TPR1-domain of HOP; HOP 99.3 3.5E-11 1.2E-15 91.0 13.5 94 206-301 3-96 (118)
125 1qqe_A Vesicular transport pro 99.3 8.2E-12 2.8E-16 114.2 11.8 123 178-302 42-183 (292)
126 1na0_A Designed protein CTPR3; 99.3 5.7E-11 1.9E-15 90.5 14.3 99 202-302 3-102 (125)
127 2fbn_A 70 kDa peptidylprolyl i 99.3 2.3E-12 7.7E-17 110.2 7.1 115 185-301 16-146 (198)
128 2dba_A Smooth muscle cell asso 99.3 2.7E-11 9.1E-16 96.1 12.5 100 201-302 22-124 (148)
129 4g1t_A Interferon-induced prot 99.3 3.7E-11 1.3E-15 113.9 15.7 125 175-300 53-198 (472)
130 1na3_A Designed protein CTPR2; 99.3 3.3E-11 1.1E-15 88.8 12.0 85 205-291 7-91 (91)
131 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.5E-12 5.2E-17 128.0 6.1 115 185-301 246-375 (457)
132 1ouv_A Conserved hypothetical 99.3 7.6E-11 2.6E-15 104.7 15.9 123 172-301 5-138 (273)
133 2qfc_A PLCR protein; TPR, HTH, 99.3 5.4E-11 1.8E-15 108.1 14.7 119 176-296 118-255 (293)
134 3ulq_A Response regulator aspa 99.3 1.4E-11 4.7E-16 115.2 10.8 127 173-301 143-288 (383)
135 4a1s_A PINS, partner of inscut 99.3 1.4E-11 4.7E-16 114.5 10.3 125 175-301 50-207 (411)
136 1elr_A TPR2A-domain of HOP; HO 99.3 3.4E-11 1.1E-15 92.8 10.8 96 205-302 2-104 (131)
137 2ooe_A Cleavage stimulation fa 99.3 2E-11 6.9E-16 119.9 11.9 129 172-301 320-449 (530)
138 2xev_A YBGF; tetratricopeptide 99.3 5.1E-11 1.7E-15 93.3 11.8 92 209-302 4-101 (129)
139 3rkv_A Putative peptidylprolyl 99.2 5.8E-11 2E-15 98.3 11.7 93 207-301 11-121 (162)
140 2ifu_A Gamma-SNAP; membrane fu 99.2 2.3E-11 7.9E-16 112.0 10.2 124 175-301 78-219 (307)
141 3gw4_A Uncharacterized protein 99.2 2E-11 6.8E-16 102.1 8.9 127 173-301 26-171 (203)
142 1a17_A Serine/threonine protei 99.2 1.7E-10 5.8E-15 93.1 14.1 94 207-302 13-106 (166)
143 3u3w_A Transcriptional activat 99.2 2.7E-11 9.2E-16 110.1 10.4 122 178-301 120-261 (293)
144 3sf4_A G-protein-signaling mod 99.2 2E-11 6.9E-16 111.7 9.3 126 174-301 188-331 (406)
145 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.7E-15 106.9 13.5 97 204-302 1-97 (281)
146 2l6j_A TPR repeat-containing p 99.2 4.7E-12 1.6E-16 96.5 3.5 92 175-268 6-103 (111)
147 1ouv_A Conserved hypothetical 99.2 4E-10 1.4E-14 100.0 16.0 122 173-301 74-210 (273)
148 3ro2_A PINS homolog, G-protein 99.2 5.6E-11 1.9E-15 104.5 10.2 115 176-292 8-138 (338)
149 3ro2_A PINS homolog, G-protein 99.2 3.1E-11 1E-15 106.2 8.0 125 175-301 185-327 (338)
150 3sf4_A G-protein-signaling mod 99.2 6.4E-11 2.2E-15 108.3 10.4 116 175-292 11-142 (406)
151 3ma5_A Tetratricopeptide repea 99.2 1.3E-10 4.6E-15 90.2 10.7 89 202-292 2-92 (100)
152 2hr2_A Hypothetical protein; a 99.2 1.9E-10 6.5E-15 100.6 12.6 93 207-301 11-126 (159)
153 3ulq_A Response regulator aspa 99.2 3.9E-11 1.3E-15 112.2 8.7 122 178-301 108-248 (383)
154 4a1s_A PINS, partner of inscut 99.2 4.3E-11 1.5E-15 111.1 8.6 126 174-301 224-367 (411)
155 2qfc_A PLCR protein; TPR, HTH, 99.2 1.1E-09 3.6E-14 99.5 16.9 124 177-302 79-221 (293)
156 2kc7_A BFR218_protein; tetratr 99.2 5.2E-11 1.8E-15 90.2 6.8 91 177-277 4-95 (99)
157 3q15_A PSP28, response regulat 99.2 1E-10 3.4E-15 109.7 9.9 128 173-302 141-286 (378)
158 1na3_A Designed protein CTPR2; 99.1 4.8E-10 1.7E-14 82.5 11.6 80 174-254 10-89 (91)
159 3rjv_A Putative SEL1 repeat pr 99.1 1E-10 3.5E-15 102.4 8.9 125 171-301 16-153 (212)
160 2ooe_A Cleavage stimulation fa 99.1 2.3E-10 7.8E-15 112.4 12.4 127 174-301 357-487 (530)
161 3k9i_A BH0479 protein; putativ 99.1 3.2E-11 1.1E-15 95.2 5.1 80 221-301 3-85 (117)
162 2if4_A ATFKBP42; FKBP-like, al 99.1 8.4E-11 2.9E-15 111.0 6.2 103 175-278 232-334 (338)
163 3rjv_A Putative SEL1 repeat pr 99.1 3.7E-10 1.3E-14 98.9 9.4 126 171-301 48-192 (212)
164 2ifu_A Gamma-SNAP; membrane fu 99.1 4E-10 1.4E-14 103.7 9.6 124 176-302 39-180 (307)
165 3u3w_A Transcriptional activat 99.1 8.7E-10 3E-14 100.1 11.2 122 178-301 80-220 (293)
166 2kat_A Uncharacterized protein 99.0 1.5E-09 5.3E-14 84.6 10.2 75 226-301 3-77 (115)
167 3gw4_A Uncharacterized protein 99.0 1.1E-09 3.7E-14 91.5 9.9 116 184-302 3-132 (203)
168 1dce_A Protein (RAB geranylger 99.0 9E-09 3.1E-13 104.9 17.8 117 183-301 38-168 (567)
169 1hz4_A MALT regulatory protein 99.0 2.1E-09 7E-14 99.4 11.3 127 175-303 55-200 (373)
170 1wao_1 Serine/threonine protei 99.0 2.1E-10 7.3E-15 113.7 4.7 103 172-276 39-154 (477)
171 3dra_A Protein farnesyltransfe 99.0 1.5E-08 5.2E-13 96.2 16.4 121 178-300 37-169 (306)
172 1ihg_A Cyclophilin 40; ppiase 99.0 2.4E-09 8.2E-14 103.0 10.8 94 207-302 223-332 (370)
173 3q15_A PSP28, response regulat 99.0 2.7E-09 9.4E-14 99.9 10.9 98 175-274 184-292 (378)
174 1hz4_A MALT regulatory protein 99.0 4.2E-09 1.5E-13 97.3 11.8 125 176-302 17-160 (373)
175 3bee_A Putative YFRE protein; 98.9 4.2E-09 1.4E-13 83.1 9.8 73 203-277 2-77 (93)
176 1dce_A Protein (RAB geranylger 98.9 4.3E-09 1.5E-13 107.3 12.3 113 176-290 66-191 (567)
177 4f3v_A ESX-1 secretion system 98.9 1.1E-09 3.8E-14 103.6 6.8 126 175-303 104-234 (282)
178 2kc7_A BFR218_protein; tetratr 98.9 1.8E-08 6E-13 76.1 12.0 79 211-291 4-85 (99)
179 3ro3_A PINS homolog, G-protein 98.9 7.6E-09 2.6E-13 81.4 9.5 99 175-275 51-161 (164)
180 3dra_A Protein farnesyltransfe 98.9 4E-08 1.4E-12 93.3 15.2 109 187-297 124-240 (306)
181 2xm6_A Protein corresponding t 98.8 5.4E-08 1.8E-12 94.6 15.2 121 172-300 254-390 (490)
182 1zu2_A Mitochondrial import re 98.8 4.5E-09 1.5E-13 91.8 6.8 81 220-301 14-115 (158)
183 3e4b_A ALGK; tetratricopeptide 98.8 2.3E-08 7.9E-13 97.7 12.6 122 172-301 175-311 (452)
184 3q7a_A Farnesyltransferase alp 98.8 3.9E-08 1.3E-12 95.6 13.4 111 182-294 63-176 (349)
185 3e4b_A ALGK; tetratricopeptide 98.8 2.9E-08 9.8E-13 97.0 12.0 115 177-301 217-346 (452)
186 2xm6_A Protein corresponding t 98.8 1.1E-07 3.7E-12 92.4 16.0 123 172-301 74-211 (490)
187 3n71_A Histone lysine methyltr 98.8 1.5E-08 5.1E-13 102.1 9.8 123 179-303 315-461 (490)
188 3ma5_A Tetratricopeptide repea 98.8 2.5E-08 8.5E-13 77.2 8.5 64 237-301 2-65 (100)
189 3dss_A Geranylgeranyl transfer 98.7 2.5E-07 8.6E-12 89.1 16.3 115 182-298 38-166 (331)
190 3q7a_A Farnesyltransferase alp 98.7 6.9E-08 2.4E-12 93.8 12.3 116 176-292 91-216 (349)
191 3dss_A Geranylgeranyl transfer 98.7 1.5E-07 5E-12 90.8 14.3 110 179-290 114-240 (331)
192 1pc2_A Mitochondria fission pr 98.7 1.9E-07 6.6E-12 81.1 11.9 99 188-288 13-116 (152)
193 1klx_A Cysteine rich protein B 98.6 4.3E-07 1.5E-11 74.9 12.7 106 187-301 9-121 (138)
194 3u64_A Protein TP_0956; tetrat 98.6 9E-08 3.1E-12 91.4 9.2 89 187-275 177-272 (301)
195 1klx_A Cysteine rich protein B 98.6 4E-07 1.4E-11 75.0 11.9 105 171-284 25-136 (138)
196 3mv2_B Coatomer subunit epsilo 98.6 2.3E-07 7.8E-12 88.9 11.2 122 176-302 103-236 (310)
197 2v5f_A Prolyl 4-hydroxylase su 98.6 7.1E-07 2.4E-11 70.3 11.9 77 206-284 4-87 (104)
198 4f3v_A ESX-1 secretion system 98.5 2.7E-07 9.3E-12 87.3 10.1 114 175-291 137-255 (282)
199 3ly7_A Transcriptional activat 98.5 1.4E-06 4.6E-11 85.6 14.4 124 176-301 199-334 (372)
200 3qww_A SET and MYND domain-con 98.4 9.3E-07 3.2E-11 87.7 11.3 93 186-280 311-424 (433)
201 3bee_A Putative YFRE protein; 98.4 8.6E-07 2.9E-11 69.7 8.5 73 171-244 4-79 (93)
202 2v5f_A Prolyl 4-hydroxylase su 98.4 2E-06 6.8E-11 67.7 10.3 74 176-250 8-88 (104)
203 3u64_A Protein TP_0956; tetrat 98.4 2E-06 7E-11 82.1 11.9 98 203-301 148-264 (301)
204 4e6h_A MRNA 3'-END-processing 98.3 2.8E-06 9.7E-11 88.8 12.9 110 190-301 326-458 (679)
205 4e6h_A MRNA 3'-END-processing 98.3 1.5E-06 5.2E-11 90.8 10.8 125 176-301 437-565 (679)
206 4b4t_Q 26S proteasome regulato 98.3 1E-06 3.5E-11 82.4 8.4 123 178-302 9-160 (434)
207 4b4t_Q 26S proteasome regulato 98.3 1.4E-06 4.7E-11 81.5 8.9 124 176-301 58-199 (434)
208 3qwp_A SET and MYND domain-con 98.3 1.7E-06 5.7E-11 85.5 8.9 98 182-281 296-414 (429)
209 3mv2_B Coatomer subunit epsilo 98.3 3.6E-06 1.2E-10 80.6 10.5 123 174-303 72-204 (310)
210 3n71_A Histone lysine methyltr 98.2 2.7E-06 9.3E-11 85.6 9.3 97 175-273 353-465 (490)
211 2uy1_A Cleavage stimulation fa 98.1 4.1E-05 1.4E-09 76.4 15.1 127 173-301 213-378 (493)
212 1xi4_A Clathrin heavy chain; a 98.1 2.2E-05 7.4E-10 88.2 14.1 115 172-301 1104-1245(1630)
213 1pc2_A Mitochondria fission pr 98.0 1.3E-05 4.5E-10 69.5 8.1 79 172-251 31-114 (152)
214 1xi4_A Clathrin heavy chain; a 98.0 3.3E-05 1.1E-09 86.8 12.0 97 185-294 1088-1184(1630)
215 3qww_A SET and MYND domain-con 98.0 1.2E-05 4.1E-10 79.7 7.6 80 221-301 311-406 (433)
216 1nzn_A CGI-135 protein, fissio 97.9 7.3E-05 2.5E-09 63.0 11.0 98 187-286 15-117 (126)
217 2uy1_A Cleavage stimulation fa 97.9 9.4E-05 3.2E-09 73.8 13.3 125 174-304 287-411 (493)
218 3ly7_A Transcriptional activat 97.9 8.1E-05 2.8E-09 73.0 11.4 74 201-277 271-344 (372)
219 1b89_A Protein (clathrin heavy 97.9 5.3E-05 1.8E-09 76.0 10.3 101 175-289 124-253 (449)
220 3qwp_A SET and MYND domain-con 97.8 5.6E-05 1.9E-09 74.5 8.6 81 220-301 299-395 (429)
221 1b89_A Protein (clathrin heavy 97.7 0.00026 8.8E-09 71.0 11.8 119 175-298 150-303 (449)
222 3ffl_A Anaphase-promoting comp 97.6 0.00027 9.2E-09 62.2 10.1 30 276-305 121-150 (167)
223 4h7y_A Dual specificity protei 97.6 0.00028 9.7E-09 61.6 9.4 113 177-293 17-143 (161)
224 4h7y_A Dual specificity protei 97.6 0.00085 2.9E-08 58.6 11.9 74 226-301 37-118 (161)
225 3ffl_A Anaphase-promoting comp 97.3 0.001 3.4E-08 58.6 9.5 106 179-287 26-165 (167)
226 1y8m_A FIS1; mitochondria, unk 97.2 0.0045 1.5E-07 53.2 12.5 83 204-287 36-121 (144)
227 4g26_A Pentatricopeptide repea 97.2 0.0067 2.3E-07 60.7 15.3 116 187-304 84-202 (501)
228 1nzn_A CGI-135 protein, fissio 97.1 0.0013 4.4E-08 55.3 7.1 79 172-251 34-117 (126)
229 4gns_B Protein CSD3, chitin bi 97.0 0.0069 2.4E-07 64.2 13.6 121 180-301 255-395 (754)
230 3o48_A Mitochondria fission 1 97.0 0.0044 1.5E-07 52.6 9.6 81 206-287 39-122 (134)
231 4g26_A Pentatricopeptide repea 96.9 0.014 4.7E-07 58.4 14.8 128 176-305 29-168 (501)
232 1zbp_A Hypothetical protein VP 96.9 0.011 3.8E-07 55.7 12.9 68 183-251 7-74 (273)
233 1y8m_A FIS1; mitochondria, unk 96.6 0.013 4.5E-07 50.3 9.8 78 173-251 39-120 (144)
234 3o48_A Mitochondria fission 1 96.5 0.012 4.1E-07 50.0 9.0 76 175-251 42-121 (134)
235 3mkq_A Coatomer beta'-subunit; 95.5 0.21 7.1E-06 50.3 14.3 31 203-234 677-707 (814)
236 1ya0_A SMG-7 transcript varian 95.1 0.11 3.7E-06 52.5 10.7 69 220-289 164-232 (497)
237 3kae_A CDC27, possible protein 94.2 0.91 3.1E-05 40.8 13.2 119 180-301 69-232 (242)
238 3mkq_A Coatomer beta'-subunit; 94.2 0.67 2.3E-05 46.5 14.0 108 177-297 685-803 (814)
239 2ff4_A Probable regulatory pro 93.9 0.47 1.6E-05 45.6 11.8 85 186-272 128-234 (388)
240 4b4t_R RPN7, 26S proteasome re 93.4 0.46 1.6E-05 46.4 10.8 98 175-274 133-239 (429)
241 1ya0_A SMG-7 transcript varian 93.4 0.28 9.6E-06 49.5 9.4 78 176-254 155-232 (497)
242 4gns_B Protein CSD3, chitin bi 93.2 0.25 8.6E-06 52.4 9.2 59 209-269 339-397 (754)
243 1zbp_A Hypothetical protein VP 92.6 0.52 1.8E-05 44.3 9.4 63 220-283 9-71 (273)
244 3txn_A 26S proteasome regulato 91.4 1.9 6.3E-05 42.3 12.2 94 178-273 104-211 (394)
245 3kae_A CDC27, possible protein 91.2 2.7 9.2E-05 37.7 11.8 93 179-278 39-149 (242)
246 4fhn_B Nucleoporin NUP120; pro 90.6 1.3 4.4E-05 48.5 11.2 117 178-300 817-961 (1139)
247 3mkq_B Coatomer subunit alpha; 89.8 9.7 0.00033 33.3 14.4 46 183-234 15-60 (177)
248 4b4t_P 26S proteasome regulato 89.7 3.4 0.00011 40.5 12.5 94 177-272 141-247 (445)
249 2ff4_A Probable regulatory pro 89.4 0.93 3.2E-05 43.5 8.0 58 244-302 173-230 (388)
250 3spa_A Mtrpol, DNA-directed RN 87.7 4.1 0.00014 45.0 12.4 95 176-273 130-231 (1134)
251 4fhn_B Nucleoporin NUP120; pro 83.4 4.6 0.00016 44.1 10.3 117 172-291 841-985 (1139)
252 3txn_A 26S proteasome regulato 81.8 7.3 0.00025 38.0 10.1 87 212-300 104-204 (394)
253 3spa_A Mtrpol, DNA-directed RN 81.7 22 0.00076 39.3 14.6 95 209-305 129-229 (1134)
254 3mkq_B Coatomer subunit alpha; 81.3 6.1 0.00021 34.6 8.4 55 205-269 6-60 (177)
255 1qsa_A Protein (soluble lytic 79.2 16 0.00056 37.5 12.2 118 185-304 226-346 (618)
256 1wy6_A Hypothetical protein ST 78.4 25 0.00087 30.4 11.0 80 187-273 75-155 (172)
257 4b4t_S RPN3, 26S proteasome re 74.8 2.4 8.1E-05 43.2 4.3 56 218-276 241-303 (523)
258 4b4t_R RPN7, 26S proteasome re 74.1 3.1 0.00011 40.4 4.9 109 190-300 111-231 (429)
259 4b4t_S RPN3, 26S proteasome re 73.7 5.4 0.00018 40.6 6.6 121 177-301 140-294 (523)
260 3esl_A Checkpoint serine/threo 69.8 44 0.0015 29.8 11.0 81 194-277 58-149 (202)
261 2br9_A 14-3-3E, 14-3-3 protein 67.6 12 0.00041 34.2 6.9 46 190-235 147-200 (234)
262 2npm_A 14-3-3 domain containin 65.3 14 0.00047 34.3 6.9 24 212-235 202-225 (260)
263 3iqu_A 14-3-3 protein sigma; s 64.7 16 0.00053 33.5 7.1 45 190-234 150-202 (236)
264 1o9d_A 14-3-3-like protein C; 64.4 15 0.0005 34.1 6.9 46 190-235 152-205 (260)
265 3uzd_A 14-3-3 protein gamma; s 63.4 17 0.00059 33.5 7.1 45 190-234 148-200 (248)
266 4gq2_M Nucleoporin NUP120; bet 62.3 46 0.0016 35.7 11.3 94 179-278 816-933 (950)
267 3ubw_A 14-3-3E, 14-3-3 protein 61.8 19 0.00064 33.5 7.1 35 236-270 189-226 (261)
268 1qsa_A Protein (soluble lytic 61.4 28 0.00097 35.7 9.2 80 189-271 268-347 (618)
269 2w2u_A Hypothetical P60 katani 61.2 14 0.00049 28.1 5.3 13 225-237 17-29 (83)
270 2v6y_A AAA family ATPase, P60 60.4 15 0.00052 27.8 5.3 12 226-237 10-21 (83)
271 2o8p_A 14-3-3 domain containin 59.5 59 0.002 29.5 9.9 64 221-284 138-215 (227)
272 3esl_A Checkpoint serine/threo 59.3 53 0.0018 29.3 9.4 116 188-305 7-143 (202)
273 4b4t_P 26S proteasome regulato 59.2 1.1E+02 0.0039 29.5 12.7 89 210-300 140-241 (445)
274 2npm_A 14-3-3 domain containin 58.3 46 0.0016 30.8 9.1 48 225-272 173-227 (260)
275 1wy6_A Hypothetical protein ST 58.2 34 0.0012 29.6 7.5 57 181-238 99-155 (172)
276 2v6y_A AAA family ATPase, P60 57.9 29 0.00099 26.3 6.5 64 190-273 9-72 (83)
277 1o9d_A 14-3-3-like protein C; 57.0 49 0.0017 30.5 9.1 48 225-272 152-207 (260)
278 2w2u_A Hypothetical P60 katani 56.8 27 0.00094 26.5 6.2 44 189-241 16-59 (83)
279 3lpz_A GET4 (YOR164C homolog); 55.8 1.1E+02 0.0037 29.2 11.6 60 240-300 134-210 (336)
280 2o8p_A 14-3-3 domain containin 54.8 49 0.0017 30.0 8.5 50 187-236 139-196 (227)
281 2wpv_A GET4, UPF0363 protein Y 54.4 44 0.0015 31.5 8.5 65 240-305 132-216 (312)
282 4a1g_A Mitotic checkpoint seri 54.1 77 0.0026 26.9 9.2 50 227-277 84-135 (152)
283 3efz_A 14-3-3 protein; 14-3-3, 52.6 18 0.00063 33.7 5.4 49 224-272 175-226 (268)
284 4aez_C MAD3, mitotic spindle c 52.2 86 0.003 28.3 9.7 52 225-277 131-184 (223)
285 3t5x_A PCI domain-containing p 52.1 31 0.0011 30.2 6.7 83 209-301 16-103 (203)
286 2cpt_A SKD1 protein, vacuolar 51.7 93 0.0032 25.0 9.2 47 189-244 15-61 (117)
287 4a5x_A MITD1, MIT domain-conta 51.5 23 0.00077 27.2 5.0 16 220-235 28-43 (86)
288 4b4t_O 26S proteasome regulato 51.4 35 0.0012 32.7 7.5 78 218-296 86-188 (393)
289 1wfd_A Hypothetical protein 15 51.2 26 0.00088 27.1 5.3 33 188-236 11-43 (93)
290 3lpz_A GET4 (YOR164C homolog); 48.7 1.8E+02 0.0063 27.6 15.2 117 172-291 135-296 (336)
291 2wvi_A Mitotic checkpoint seri 48.6 74 0.0025 27.3 8.3 50 227-277 79-130 (164)
292 2cfu_A SDSA1; SDS-hydrolase, l 48.3 48 0.0016 34.1 8.3 50 244-294 451-500 (658)
293 2l6f_A Focal adhesion kinase 1 53.6 3.8 0.00013 37.0 0.0 6 105-110 129-134 (215)
294 3ax2_A Mitochondrial import re 42.8 43 0.0015 25.2 5.1 35 213-248 23-57 (73)
295 2br9_A 14-3-3E, 14-3-3 protein 42.6 57 0.002 29.6 7.0 48 225-272 147-202 (234)
296 3re2_A Predicted protein; meni 41.0 42 0.0014 33.1 6.0 64 172-236 254-324 (472)
297 3t5v_B Nuclear mRNA export pro 40.3 53 0.0018 32.6 6.9 67 174-241 177-254 (455)
298 3mv2_A Coatomer subunit alpha; 40.1 2E+02 0.0068 27.4 10.6 96 179-277 120-241 (325)
299 3iqu_A 14-3-3 protein sigma; s 39.6 69 0.0024 29.2 7.0 48 225-272 150-205 (236)
300 2ijq_A Hypothetical protein; s 39.1 1.2E+02 0.0042 25.8 8.2 52 220-272 44-104 (161)
301 3uzd_A 14-3-3 protein gamma; s 37.6 76 0.0026 29.1 7.0 48 225-272 148-203 (248)
302 2cfu_A SDSA1; SDS-hydrolase, l 37.6 60 0.002 33.4 7.0 40 220-260 461-500 (658)
303 3ax2_A Mitochondrial import re 37.3 79 0.0027 23.7 5.9 36 247-283 22-57 (73)
304 1p4b_L Antibody variable light 37.2 12 0.00041 30.1 1.4 10 124-133 88-97 (135)
305 2cpt_A SKD1 protein, vacuolar 36.9 85 0.0029 25.3 6.5 13 225-237 16-28 (117)
306 2dl1_A Spartin; SPG20, MIT, st 36.5 24 0.00083 28.9 3.1 46 221-275 16-61 (116)
307 1wfd_A Hypothetical protein 15 36.4 1E+02 0.0035 23.6 6.7 17 259-275 38-54 (93)
308 4a1g_A Mitotic checkpoint seri 36.0 65 0.0022 27.3 5.9 53 190-243 82-136 (152)
309 3t5x_A PCI domain-containing p 36.0 79 0.0027 27.5 6.7 78 176-262 17-98 (203)
310 4gq4_A Menin; tumor suppressor 35.7 55 0.0019 32.7 6.0 76 173-249 262-350 (489)
311 4a5x_A MITD1, MIT domain-conta 35.3 58 0.002 24.8 5.0 43 190-241 14-56 (86)
312 2wpv_A GET4, UPF0363 protein Y 35.1 1.9E+02 0.0066 27.0 9.6 65 172-236 133-216 (312)
313 3t5v_B Nuclear mRNA export pro 34.8 85 0.0029 31.1 7.4 87 188-276 141-254 (455)
314 3ubw_A 14-3-3E, 14-3-3 protein 34.1 92 0.0032 28.8 7.0 27 271-297 189-219 (261)
315 2wvi_A Mitotic checkpoint seri 33.5 1E+02 0.0036 26.3 6.9 52 191-243 78-131 (164)
316 1g1e_B SIN3A; four-helix bundl 33.0 1.3E+02 0.0046 22.9 6.8 26 189-214 10-35 (89)
317 4aez_C MAD3, mitotic spindle c 32.6 85 0.0029 28.3 6.4 51 190-241 131-183 (223)
318 1om2_A Protein (mitochondrial 32.4 78 0.0027 24.9 5.4 21 221-241 33-53 (95)
319 2crb_A Nuclear receptor bindin 32.1 67 0.0023 25.5 4.9 17 247-264 20-36 (97)
320 3u84_A Menin; MLL, JUND, ledgf 31.9 68 0.0023 32.2 5.9 64 172-236 276-346 (550)
321 4ah2_B HLA class II histocompa 31.1 9.5 0.00033 34.2 -0.2 16 141-156 11-26 (229)
322 2ca5_A MXIH; transport protein 30.9 22 0.00075 27.7 1.8 29 222-250 24-52 (85)
323 3re2_A Predicted protein; meni 30.7 1.3E+02 0.0044 29.8 7.5 45 227-272 276-325 (472)
324 4gq4_A Menin; tumor suppressor 30.3 1.3E+02 0.0043 30.2 7.5 65 206-272 261-332 (489)
325 2rpa_A Katanin P60 ATPase-cont 30.1 34 0.0012 26.0 2.8 25 178-202 17-41 (78)
326 3u6r_H Antibody 1:7 (heavy cha 26.7 20 0.00068 29.6 1.0 8 142-149 125-132 (149)
327 2v6x_A Vacuolar protein sortin 25.9 1E+02 0.0034 23.0 4.9 13 225-237 11-23 (85)
328 3efz_A 14-3-3 protein; 14-3-3, 25.7 67 0.0023 29.9 4.5 41 257-297 173-217 (268)
329 1om2_A Protein (mitochondrial 23.0 60 0.0021 25.6 3.1 33 179-211 26-58 (95)
330 3bu8_A Telomeric repeat-bindin 22.9 2.4E+02 0.0082 25.7 7.4 83 189-272 88-186 (235)
331 3u84_A Menin; MLL, JUND, ledgf 22.7 2.1E+02 0.007 28.8 7.5 45 227-272 298-347 (550)
332 2p58_C Putative type III secre 22.6 3.1E+02 0.011 22.2 7.8 60 198-266 31-92 (116)
333 3eab_A Spastin; spastin, MIT, 22.5 54 0.0018 25.7 2.7 20 221-240 10-29 (89)
334 2cr7_A Paired amphipathic heli 21.3 1.7E+02 0.0059 21.8 5.3 62 188-249 9-70 (80)
335 2ijq_A Hypothetical protein; s 20.9 3.4E+02 0.011 23.1 7.7 59 178-236 37-103 (161)
336 4gq2_M Nucleoporin NUP120; bet 20.5 77 0.0026 33.9 4.4 73 220-297 822-917 (950)
337 2dl1_A Spartin; SPG20, MIT, st 20.4 40 0.0014 27.7 1.6 48 185-241 15-62 (116)
338 2rpa_A Katanin P60 ATPase-cont 20.3 82 0.0028 23.8 3.3 25 247-272 17-41 (78)
339 2wb7_A PT26-6P; extra chromoso 20.3 5.1E+02 0.017 26.3 9.9 45 222-272 453-497 (526)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=8.8e-18 Score=137.26 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..|.|+.|++.|+|++|+.+|+++|+++|.++.++.++|.++. ..|++++|+++|++||+++|+++.++..+|.+++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA- 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 4588999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.|++++|+++|+++++++|++..++..++.|+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999998875
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=1.2e-18 Score=145.77 Aligned_cols=118 Identities=9% Similarity=0.061 Sum_probs=63.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
++|..+..++++++|++.|++++..+|+++..++.+|.+++ ..|++++|+++|++||+++|+++.++..+|.++.. .|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence 34444455555555555555555555555555555555543 34555555555555555555555555555555555 55
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++++|+.+|+++++++|+++.++..+|.+|.+.++++++.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 5555555555555555555555555555555555554444
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=1.4e-17 Score=139.12 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=109.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|.+.+++++|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.++
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999965 789999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 253 WQAHKDASRAESY-FDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 253 ~~~~Gd~deAiey-ferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++ .+++++|... +++|++++|+++.++..++.++...|+
T Consensus 110 ~~-~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CK-NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HH-HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HH-cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99 9999877665 699999999999999999999988886
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=2.9e-17 Score=144.29 Aligned_cols=125 Identities=14% Similarity=-0.020 Sum_probs=78.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|+++|+.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666643 45666666666666666666666666666666666
Q ss_pred Hc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AH-----------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~-----------Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. |++++|+..|+++++++|++..++..+|.++...|++++|+..++
T Consensus 86 -~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 86 -LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp -HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5 666666666666666666666666666666666666666665444
No 5
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=1.3e-16 Score=133.77 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=95.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----------------------------- 222 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G----------------------------- 222 (331)
+.....|+|..|..+|++++|+.+|+++|+++|+++.++..+|.++. ..|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34456788999999999999999999999999999999998888754 344
Q ss_pred -----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 223 -----DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 223 -----dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++++|.+++.+++.++|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..+|.+|..+|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555666666666666666666666777776 777777777777777777777777777777777777777777
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
..++
T Consensus 162 ~~~~ 165 (184)
T 3vtx_A 162 KYFK 165 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=3.4e-17 Score=143.87 Aligned_cols=127 Identities=20% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCcccccHHHHHHhC-----------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 172 GSGFSGSNNNYSNNN-----------HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~-----------gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+.....|+|.+|... |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++ +
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-D 149 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-C
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-c
Confidence 455678999999999 99999999999999999999999999999975 6899999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++..+|.++.. .|++++|+.+|+++++++|++..++..++.++...|++++|...++
T Consensus 150 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 150 TPEIRSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred chHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999998887
No 7
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.72 E-value=7.9e-17 Score=169.16 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...+.|+|..|.++|++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|++||+++|+++.++..+|.++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777776654 567777777777777777777777777777776
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+++|++|++++|+++.++.++|.+|..+|++++|+..++
T Consensus 88 ~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 88 KE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66 6777777777777777777777777777777777777766665444
No 8
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=9.2e-16 Score=128.48 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=96.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....+++.++...++++.|..++.+++..+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 3446678899999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~ 278 (331)
+. .|++++|+.+|++|++++|+++.
T Consensus 152 ~~-~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 152 EG-KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HH-TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HH-CCCHHHHHHHHHHHHhCCccCHH
Confidence 99 99999999999999999997653
No 9
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-16 Score=121.55 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=113.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.......++|..+...+++++|+.+|+++++.+|+++.++..+|.++. ..+++++|+++|++++..+|+++.++..+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 455668899999999999999999999999999999999999999965 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
+++. .|++++|+.+|+++++++|.+..++..++.++...++
T Consensus 93 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999 9999999999999999999999999999999998764
No 10
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.69 E-value=1.6e-15 Score=116.96 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=111.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|++++..+|+++.++..+|.++. ..+++++|.++|++++..+|+++.++..+|.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
.+++++|+.+|+++++++|++..++..++.++...|+++
T Consensus 93 -~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 93 -LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred -hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998763
No 11
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=3e-16 Score=164.81 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=121.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|..|...|++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|++||+++|+++.++..+|.+
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASI 120 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+++|++|++++|+++.++.+++.+|..++++++|++.++
T Consensus 121 ~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 121 HKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999986544
No 12
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-15 Score=121.29 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=106.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.+.|..+...+++++|+.+|+++|+.+|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA- 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 4678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 020109 256 HKDASRAESYFDQAVKSA------PDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deAieyferALeld------Pdna~vl~~lA~~L~kl 290 (331)
.|++++|+.+|+++++++ |++..++..+..+..++
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999 99999999998887654
No 13
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.68 E-value=1.1e-15 Score=132.50 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=120.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+....+.|..+...+++++|+.+|+++++.+| .++.+++++|.++. ..|++++|+++|++|+..+|+++.++..+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45677899999999999999999999999999 89999999999865 78999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC-------YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna-------~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++++|++. .++..+|.++...|++++|+..++
T Consensus 86 ~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 86 YRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 999 9999999999999999999999 669999999999999999998876
No 14
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=6.2e-16 Score=134.98 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=109.3
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN----------------YARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~----------------yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+...|..+...|++++|+.+|+++++.+|+++.+++. +|.++. ..|++++|+.+|++|++++|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC
Confidence 3457888999999999999999999999999999999 999865 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+++.++..+|.+++. .|++++|+.+|+++++++|+++.+++.+|.+|+..++.+
T Consensus 86 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 86 NNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999999 999999999999999999999999999999998776543
No 15
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.67 E-value=9.4e-16 Score=127.65 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=106.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...+.++|..|...+++++|+.+|+++|+++|+++.+++++|.+++ ..|++++|+.+|++|+.++|+++.++..+|.++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999975 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+. .|++++|+.+|+++++++|++..+++..+....+.
T Consensus 90 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 90 FD-MADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99 99999999999999999999988666666554443
No 16
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=2.2e-15 Score=122.20 Aligned_cols=124 Identities=19% Similarity=0.093 Sum_probs=114.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|.++|++++.++|+++.++..+|.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~- 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA- 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 5678999999999999999999999999999999999999965 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~--L~klG~~eEa~~~~e 301 (331)
.|++++|+.+|+++++++|++..++..++.+ +...|++++|....+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999888555544 888899999987655
No 17
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=4.1e-15 Score=114.34 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=118.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|..+|++++..+|.++.++..+|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK- 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++..|.+..++..++.++...|++++|...+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977763
No 18
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=1.5e-15 Score=129.47 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=90.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+....+++|..|...|++++|+.+|++++.++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34457788888999999999999999999999999999999988865 67899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna 277 (331)
++. .|++++|+.+|++++++.|+..
T Consensus 114 ~~~-lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLR-LKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 888 9999999999999999988765
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=7.7e-15 Score=119.39 Aligned_cols=128 Identities=14% Similarity=0.010 Sum_probs=120.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|.++|++++..+|.++.++..+|.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999865 679999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.. .|++++|+.+|+++++..|++..++..++.++...|++++|...++.
T Consensus 121 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 121 DN-LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999987763
No 20
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=8.7e-17 Score=137.13 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=104.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfe 267 (331)
++..+...|+++++++|+++.+++.+|.+++ ..|++++|+.+|++|+.++|+++.++..+|.++.. .|++++|+.+|+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYA 94 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence 3444556677888899999999999999976 68999999999999999999999999999999999 999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 268 QAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 268 rALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++++|+++.+|+++|.+|..+|++++|...++
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999998776
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.5e-15 Score=147.62 Aligned_cols=128 Identities=11% Similarity=0.001 Sum_probs=117.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd-yeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....+++.+|...+++++|+.+|+++|+++|+++.+|+++|.++. ..|+ +++|+.+|++||.++|+++.++..+|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999975 5785 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+.+|++||+++|++..+|+++|.++..+|++++|...++
T Consensus 175 ~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 175 LVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999987665
No 22
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.5e-14 Score=110.51 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=109.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..+|++++..+|.++.++..+|.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999975 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
. .+++++|+.+|+++++.+|++..++..++.++...|
T Consensus 89 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 K-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred H-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9 999999999999999999999999999999987654
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=2.1e-15 Score=123.50 Aligned_cols=115 Identities=13% Similarity=-0.079 Sum_probs=102.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|+++.++..+|.++. ..|++++|+.+|++|+.++|+++.++..+|.+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999965 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
. .|++++|+.+|+++++++|+++........+...+
T Consensus 98 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 98 Q-LGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 9 99999999999999999998876665555444433
No 24
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=2.2e-15 Score=125.96 Aligned_cols=107 Identities=8% Similarity=-0.043 Sum_probs=97.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..+...|++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.. .|++++|+.+|+++++++|+++....
T Consensus 100 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQ-XGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH-cCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99 99999999999999999998775543
No 25
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=3.2e-15 Score=141.01 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=116.1
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
...++|..|...+++++|+.+|++||+++|++ ..++.++|.++. ..+++++|+.+|++|++++|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999 689999999965 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+++.++..+|.+++. .|++++|+.+|++|++++|++..++..++.++..++++++++.
T Consensus 228 ~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999998853
No 26
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=1.3e-14 Score=110.12 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=104.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..++++++..+|+++.++..+|.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~- 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF- 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
.|++++|+.+|+++++.+|++..++..++.+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999887753
No 27
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=2.5e-15 Score=130.33 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=112.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NIL 245 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-------~vL 245 (331)
.....|+|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++ .++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999975 78999999999999999999999 668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPd--na~vl~~lA~~L~klG~~ 293 (331)
..+|.+++. .|++++|+++|+++++++|+ ++.++..+|.++...|+.
T Consensus 121 ~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999 999999999999999887
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=2e-14 Score=123.14 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=109.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|+++++.+|+++.++..+|.++
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566778888888888899999999988888888888888888864 678888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.. .|++++|+.+|+++++..|++..++..++.++...|++++|...+++
T Consensus 136 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 136 VK-LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88 88888888888888888888888888888888888888888876663
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=1.8e-14 Score=123.40 Aligned_cols=128 Identities=13% Similarity=-0.006 Sum_probs=121.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++.+|+++.++..+|.++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+. .|++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 170 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 170 AN-EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HH-HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999987763
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-14 Score=124.64 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=118.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIE--------------------------ANPGNALLLGNYARFLKEVRGDFAKA 227 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALe--------------------------ldP~npeal~~yA~lLy~~~GdyeeA 227 (331)
....++|.+|...+++++|+.+|++++. .+|.++.++..+|.++. ..|++++|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A 158 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHH
Confidence 4567899999999999999999999999 67777888999999875 68999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 228 ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...++.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999977663
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=8.8e-15 Score=134.58 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=112.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
....+++.+|...+++++|+.+|+++++.+|+ ++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44567788999999999999999999999999 9999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.. .|++++|+.+|+++++++|++..++..+|.+|..+|++++|...++..
T Consensus 257 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 257 LAN-GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999777643
No 32
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=1.6e-15 Score=126.73 Aligned_cols=107 Identities=12% Similarity=-0.026 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..+|++++.++|+++.+++.+|.+++ ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|++++++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 45688999999999999999999976 68999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++.+++.+|.+|..+|++++|...++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998776
No 33
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=7.1e-15 Score=116.74 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=108.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..+...+++++|+.+|++++..+|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34557789999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGE 292 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~ 292 (331)
++. .|++++|+.+|+++++++|+ +..++..+..+..+...
T Consensus 87 ~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 87 QLE-MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999998 77777777776655543
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=1e-14 Score=118.60 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=119.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++++++++.+|+++.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++++|+++|+++++..|++..++..+|.++...|++++|...+++
T Consensus 89 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 89 -VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp -HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987764
No 35
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=2.9e-15 Score=124.40 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=105.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA------------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel------------------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
+.+.|..++..++|++|+.+|+++|.. +|.+..++.++|.++. ..|++++|+.+|++||.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhc
Confidence 457899999999999999999999999 7777899999999965 689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCc
Q 020109 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-YVLASYAKFLWDAGED 293 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna-~vl~~lA~~L~klG~~ 293 (331)
+|+++.++..+|.++.. .|++++|+.+|+++++++|++. .+...+..+.....+.
T Consensus 93 ~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 93 EETNEKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998 7777887777665443
No 36
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=9e-15 Score=125.26 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=112.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----------------eal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
...++|..+...+++++|+.+|++++...|.++ .++.++|.++. ..+++++|+.+|++|+.++
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC
Confidence 356889999999999999999999999999988 88999999965 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 239 P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+++.++..+|.+++. .|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus 119 p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999998776665
No 37
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.60 E-value=1.5e-14 Score=117.71 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=94.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-------~vL~~l 248 (331)
..|+|+.++++++|++|+.+|++||+++|+++.++.++|.++. ..|++++|+++|++||+++|++. .++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999975 68999999999999999999764 477888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++.. .+++++|+++|+++++..|+ +.+...+
T Consensus 90 g~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 90 GNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 999998 99999999999999999984 5544433
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=7.7e-15 Score=128.55 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=113.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI----LSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v----L~~l 248 (331)
...+.++|.++...+++++|+.+|+++++.+|+++.++..+|.+++ ..|++++|+++|++++. .|.++.+ +..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999865 68999999999999999 5555444 8899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .|++++|+++|+++++++|++..++..+|.++...|++++|...++
T Consensus 81 g~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 81 GKILMK-KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHH-cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999998886
No 39
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=5.5e-15 Score=123.56 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=104.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--HH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-IWQAHKDA--SR 261 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l-l~~~~Gd~--de 261 (331)
..+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+ ++. .+++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcchHH
Confidence 4578999999999999999999999999999965 68999999999999999999999999999999 667 8998 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|+.+|+++++.+|++..+++.+|.++...|++++|...++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999999999999999999999999999998776
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=8e-15 Score=119.59 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=95.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 198 kALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
++..+||+.++.+.+.|..++ ..|+|++|+++|++||+++|+++.++..+|.+++. .|++++|+..|++|++++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence 445689999999999999976 68999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+.+|.+|..+|++++|...++
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999998876
No 41
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=2e-14 Score=122.33 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=113.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++ +| ++.+++++|.++. ..|++++|+++|++|+.++|+++.++..+|.+++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~- 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ- 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-
Confidence 5688999999999999999999996 44 7899999999965 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDC----------------YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna----------------~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|++++++.|.+. .+++.+|.++...|++++|...++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999888776 9999999999999999999976653
No 42
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=2.6e-14 Score=130.25 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=80.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.+|...+++++|+.+|++++..+|+++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.++.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666643 4566666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCchHHHhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD-----------CYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn-----------a~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
. .|++++|+.+|++++++.|++ ..+|..++.++..+|++++|....
T Consensus 297 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 297 N-LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp H-HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 6 666666666666666666655 566666666666666666665444
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=4.9e-14 Score=118.72 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.++|..+...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|.++|++++..+|+++.++..+|.++.. .
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~ 89 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-R 89 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-h
Confidence 344455555555555555555555555555555555554432 34555555555555555555555555555555554 5
Q ss_pred -CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 257 -KDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 257 -Gd~deAieyferALe--ldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
|++++|+.+|+++++ ..|.+..++..+|.++...|++++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555 33444455555555555555555554433
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=7.5e-15 Score=142.72 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=117.1
Q ss_pred CCCcccccHHHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd-~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.+.....|+|.+|...++ +++|+.+|+++|+++|+++.+|+++|.++. ..|++++|+.+|++||.++|+++.++..+|
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQ 207 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 466678899999999996 999999999999999999999999999975 679999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCchHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD-AGEDEEEE 297 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k-lG~~eEa~ 297 (331)
+++.. .|++++|+.+|+++|+++|++..+|.++|.+|.. .+..++|.
T Consensus 208 ~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 208 WVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 99999 9999999999999999999999999999999999 55557774
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=4.4e-14 Score=119.01 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=115.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAIL--ANPSDGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~-GdyeeAee~~erAL~--ldP~d~~vL~~lA~ 250 (331)
....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. .. |++++|..+|++++. .+|.++.++..+|.
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 456788999999999999999999999999999999999998865 68 999999999999999 77777899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++.. .|++++|+.+|+++++..|++..++..++.++...|++++|...++.
T Consensus 122 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 122 CSAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999977763
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=4.4e-14 Score=122.68 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=114.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ 250 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|++++. .+|.++.++..+|.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 3457788999999999999999999999999999999999998865 68999999999999999 88889999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++. .|++++|+.+|+++++..|.+..++..++.++...|++++|...++.
T Consensus 150 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 150 VSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998 99999999999999999999999999999999999999999877763
No 47
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=7.9e-14 Score=109.56 Aligned_cols=116 Identities=10% Similarity=-0.005 Sum_probs=104.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~l 248 (331)
...++|..+...+++++|+.+|+++++.+|+++ .+++.+|.+++ ..|++++|..+|++++..+|++ +.++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 356789999999999999999999999999998 79999999975 6899999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.+++. .|++++|+.+|+++++..|++..+......+..-.++
T Consensus 83 a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 999999 9999999999999999999999887777666554443
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=5.7e-15 Score=120.88 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
-..|++++..+|++...++.+|.+++ ..|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|++++++
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALM 81 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 35788899999999999999999876 68999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++.+++.+|.+|..+|++++|...++
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998776
No 49
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=1.2e-14 Score=117.47 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=90.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+.+|++|++++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~ 278 (331)
.|++++|+.+|+++++++|++..
T Consensus 98 -~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 -EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -HHHHHHHHHHHHHHHC-------
T ss_pred -cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999997653
No 50
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=2.3e-14 Score=133.19 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=97.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|..|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..++.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 34456677777777777777777777777777777777777777754 56777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++++|++..++..++.+|...|++++|...++
T Consensus 315 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 315 KRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777 7777777777777777777777777777777777777777777665
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=3.8e-14 Score=123.05 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=120.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|++++..+|.++.++..+|.++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALe--ldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+. .|++++|+++|+++++ ..|.+..++..+|.++...|++++|...+++
T Consensus 116 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 116 YE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 9999999999999999 8899999999999999999999999987763
No 52
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-14 Score=112.90 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=107.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
.+.....++|..+...+++++|+.+|+++++.+|++ ..++.++|.++. ..+++++|+.+|++++.++|+++.++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 355567889999999999999999999999999998 889999999865 6899999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+|.+++. .+++++|+.+|+++++++|++..++..++.+..
T Consensus 105 ~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999988887754
No 53
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.57 E-value=2.9e-14 Score=141.71 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=122.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|.++|++|++++|+++.++..+|.+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999965 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA---GEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl---G~~eEa~~~~e~ 302 (331)
++. .|++++|+++|+++++++|++..++..++.++..+ |++++|...+++
T Consensus 101 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 101 LED-AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999 999999977763
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=7.2e-14 Score=124.29 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=119.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|+++++.+|+++.++..+|.+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999875 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD------------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd------------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++..|+ +..++..++.++...|++++|....+
T Consensus 250 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 250 YSN-MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHH-hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999 99999999999999999998 78999999999999999999987765
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.8e-14 Score=122.69 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=116.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAIL-------- 236 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~-------- 236 (331)
+.....++|.+|...+++++|+.+|+++++.+|++ +.++..+|.++. ..+++++|.++|++++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHH
Confidence 34567789999999999999999999999999887 788899998865 68999999999999999
Q ss_pred ------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 237 ------------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 237 ------------------ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.+|.++.++..+|.+++. .|++++|+.+|+++++.+|++..++..+|.++...|++++|..
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 777788899999999999 9999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 020109 299 DNEE 302 (331)
Q Consensus 299 ~~e~ 302 (331)
.++.
T Consensus 195 ~~~~ 198 (258)
T 3uq3_A 195 DCNK 198 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 56
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.56 E-value=5.3e-14 Score=125.31 Aligned_cols=131 Identities=15% Similarity=0.037 Sum_probs=122.1
Q ss_pred CCcccccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....++|.++...+ ++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|++++..+|++..++..+|.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3456788999999999 9999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+++. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++..
T Consensus 168 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 168 EYGL-TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH-HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999998776443
No 57
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.56 E-value=7.2e-14 Score=129.87 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=106.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.++...+++++|+.+|++++..+|+++.++.++|.++. ..|++++|+++|++++.++|+++.++..+|.++
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888765 678888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+++|++++++.|++..++..++.++...|++++|...++
T Consensus 282 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 282 KE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88 8888888888888888888888888888888888888888887776
No 58
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=1.9e-14 Score=141.62 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=112.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
...++|..|++.++|++|+.+|++||+++|.+ ..+++++|.++. ..++|++|+.+|++||.++|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999998 689999999965 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
+++.+++.+|.+++. .+++++|+.+|++|++++|++..++..++.++..++++++++..
T Consensus 349 ~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999888753
No 59
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=7.4e-14 Score=128.41 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=77.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-------------- 239 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-------------- 239 (331)
....++|.+|...+++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|++++.++|
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 345566666666666666666666666666666666666665543 44555555554444444333
Q ss_pred ------------------------------C--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 240 ------------------------------S--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 240 ------------------------------~--d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
+ ++.++..+|.++.. .|++++|+.+|++++++.|+++.++..+|.++
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3 55666666666666 66666666666666666666666666666666
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...|++++|...++
T Consensus 258 ~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 258 ANGDRSEEAVEAYT 271 (365)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 66666666665554
No 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=1.2e-14 Score=149.96 Aligned_cols=128 Identities=8% Similarity=-0.048 Sum_probs=122.8
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..|...|++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|++|++++|+++.++..+|.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 456678899999999999999999999999999999999999999976 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++ +++|++|++++|++..+++++|.+|..+|++++|...++
T Consensus 510 ~~~~-~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 510 TAEL-AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHH-HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999 999999 999999999999999999999999999999999998887
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=143.30 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=79.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~---------GdyeeAee~~erAL~ldP~d~~ 243 (331)
.....++|.+|...+++++|+.+|+++++++|+ +.++.++|.++. .. |++++|+++|++|++++|+++.
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 344556666666666666666666666666665 455666665543 34 5666666666666666666666
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAH--------KDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~--------Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.+++. . +++++|+.+|++|++++| +++.+|+.+|.+|+..|++++|...++
T Consensus 215 ~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 215 SWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666 5 666666666666666666 666666666666666666666665444
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.3e-13 Score=120.26 Aligned_cols=126 Identities=8% Similarity=0.025 Sum_probs=114.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.++
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 4457789999999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+. .|++++|+.+|+++++++|++...+..++.+ ...|++++|...++
T Consensus 122 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 122 YY-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HH-hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 99 9999999999999999999998776666654 56689999987775
No 63
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.55 E-value=7.5e-14 Score=107.82 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=105.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-------~~vL~~l 248 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..+|++++..+|++ +.++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999975 6899999999999999999988 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.+++. .|++++|+.+|+++++..| +..++..++.++..+++
T Consensus 86 a~~~~~-~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 86 GNSYFK-EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999 68888888888776544
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.6e-14 Score=142.33 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=121.1
Q ss_pred CCcccccHHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....++|..|...+++ ++|+.+|+++++++|+++.++..+|.+++ ..|++++|+++|++|++++|+ +.++..+|.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 566789999999999999 99999999999999999999999999976 689999999999999999999 799999999
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCchHHHhhhh
Q 020109 251 LIWQAH---------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA--------GEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~---------Gd~deAieyferALeldPdna~vl~~lA~~L~kl--------G~~eEa~~~~e 301 (331)
+++. . |++++|+.+|++|++++|++..+|+.+|.+|... |++++|...++
T Consensus 179 ~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 179 VLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp HHTT-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHH-hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 9999 9 9999999999999999999999999999999999 99999998776
No 65
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=123.30 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=96.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---------PSDGNI 244 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld---------P~d~~v 244 (331)
....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|++++.+. |.++.+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 345567777777777777777777777777777777777777754 5677777777777777776 666777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.++.. .|++++|+.+|+++++++|++..++..+|.++...|++++|...++
T Consensus 239 ~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 239 LNNLGHVCRK-LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777777777 7888888888888888888777788888888888888877777666
No 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=1.3e-13 Score=103.99 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=92.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA 249 (331)
+.....++|..+...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|.++|+++++.+|+ ++.++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567889999999999999999999999999999999999998865 689999999999999999999 999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 020109 250 DLIWQAH-KDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 250 ~ll~~~~-Gd~deAieyferALeldPdn 276 (331)
.++.. . |++++|+++|+++++..|.+
T Consensus 84 ~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRY-IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTT-CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHH-HhCCHHHHHHHHHHHhhcccCC
Confidence 99998 9 99999999999999998865
No 67
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.54 E-value=8.6e-14 Score=122.22 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=111.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------cCCHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-----------------RGDFAKAEELCGRA 234 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~-----------------~GdyeeAee~~erA 234 (331)
...++|.+|...+++++|+.+|+++++.+|+++. +++.+|.+++.. .+++++|..+|+++
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999875 677788776532 46899999999999
Q ss_pred HHhCCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCch
Q 020109 235 ILANPSDGNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDE 294 (331)
Q Consensus 235 L~ldP~d~~vL-----------------~~lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~e 294 (331)
++.+|+++.+. ..+|.+++. .|++++|+..|+++++..|+++ .+++.++.++.++|+++
T Consensus 123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 99999998665 467888898 9999999999999999999886 67999999999999999
Q ss_pred HHHhhhhh
Q 020109 295 EEEQDNEE 302 (331)
Q Consensus 295 Ea~~~~e~ 302 (331)
+|...++.
T Consensus 202 ~A~~~~~~ 209 (225)
T 2yhc_A 202 QAEKVAKI 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99976663
No 68
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=1.3e-13 Score=125.71 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=116.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+++.++ ..+++++|+.+|+++++.+|. ++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.++..
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3666777 889999999999999999999 8999999999965 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.|++++|+.+|+++++++|++..++..+|.++...|++++|...++..
T Consensus 264 -~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 264 -GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877643
No 69
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=3.9e-14 Score=136.47 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=115.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIE----------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALe----------------ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+.++|..|.+.+++++|+.+|++||+ .+|.++.++.++|.+++ ..+++++|+++|++|++++|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCc
Confidence 56789999999999999999999999 78888999999999975 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+++.++..+|.+++. .+++++|+.+|++|++++|++..++..++.++..+++++++.+..
T Consensus 305 ~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 305 SNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988887543
No 70
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=7.9e-14 Score=122.09 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=111.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|++++.++|+++.++..+|..++.
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY- 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999965 68999999999999999999999999999955555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---chHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE---DEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~---~eEa~~~~e 301 (331)
.+++++|+.+|+++++++|++..++..++.++...++ +++|...++
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 6799999999999999999999999999999999998 766765554
No 71
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=1.9e-13 Score=122.50 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=118.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.+++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAP---DDCYVLASY------------AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldP---dna~vl~~l------------A~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++.+| ++..++..+ +.++...|++++|...++.
T Consensus 84 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 84 -QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999999 999998887 7999999999999987763
No 72
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=3.5e-14 Score=119.95 Aligned_cols=124 Identities=17% Similarity=0.062 Sum_probs=85.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..+.|..+...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++..+| ++.++..++.+.+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3456777777777777777777777777777777777777754 56777777777777777777 666655555443321
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+..+|+..|+++++++|+++.+++.+|.++...|++++|...++
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2333456777777777777777777777777777777777776655
No 73
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=1.8e-14 Score=143.09 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=113.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..|..++++++|+.+|++|++++|+++.++.++|.++. ..+++++|+++|++|++++|+++.++..+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~--L~klG~~eEa~~~~e 301 (331)
.|++++|+++|++|++++|++..++..++.+ +.+.+++++|....+
T Consensus 87 -~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 -LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999988 888899999987665
No 74
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=2.3e-14 Score=113.58 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 186 NHGSSSTDAYYEKMIEA---NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 186 ~gd~ekA~e~yekALel---dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
.|++++|+.+|+++|+. +|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++. .|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence 47899999999999999 6999999999999975 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
+.+|+++++..|++..+......+....+..
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766555555444443
No 75
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.51 E-value=3.2e-14 Score=120.13 Aligned_cols=129 Identities=9% Similarity=-0.025 Sum_probs=113.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|.+|...|++++|+.+|++++..+| ++.++..++.+......+..+|+.+|++++.++|+++.++..+|.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~ 116 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV 116 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455678999999999999999999999999999 988777666553323334456899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+.+|+++++.+|+. ..++..++.++..+|+.++|...++
T Consensus 117 ~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 117 QYNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 9999 999999999999999999975 6699999999999999999987775
No 76
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.51 E-value=1.7e-13 Score=114.52 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdy--eeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.+++...+++ ++|+.+|++++.++|+++.++..+|
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44567889999999999999999999999999999999999999955578998 9999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.+++. .|++++|+.+|+++++++|++.....
T Consensus 123 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 123 SDAFM-QANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHH-cccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999 99999999999999999998865543
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=2e-13 Score=121.12 Aligned_cols=131 Identities=14% Similarity=-0.006 Sum_probs=117.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNI 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~v 244 (331)
.+...+++.|..+...+++++|+.+|+++++.+|++ +.+++.+|.+++ ..|++++|+.+|++++.++|++ +.+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355668899999999999999999999999999999 899999999976 6899999999999999998855 667
Q ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHhhh
Q 020109 245 LSLYADLIWQA-------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 245 L~~lA~ll~~~-------~Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~eEa~~~~ 300 (331)
+..+|.+++.. .|++++|+.+|+++++..|++..+. +.+|.+|...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88899987642 6999999999999999999987766 88899999999999999888
Q ss_pred hh
Q 020109 301 EE 302 (331)
Q Consensus 301 e~ 302 (331)
+.
T Consensus 172 ~~ 173 (261)
T 3qky_A 172 EA 173 (261)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 78
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.50 E-value=3.1e-13 Score=121.05 Aligned_cols=127 Identities=15% Similarity=0.055 Sum_probs=99.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH-
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---SDGNILSLY- 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP---~d~~vL~~l- 248 (331)
.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++.++| +++.++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 3456677888888888888888888888888888888888887764 56888888888888888888 777777666
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 -----------ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 -----------A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .|++++|+++|+++++..|++..++..++.++...|++++|...++
T Consensus 116 ~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777 7888888888888888888777777788888888888777776665
No 79
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.50 E-value=5.1e-13 Score=123.54 Aligned_cols=125 Identities=10% Similarity=-0.062 Sum_probs=111.2
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL-KEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL-y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....+++..|...|++++|+.+|+++++.+|++.......+.+. +...+++++|..+|++++..+|+++.++..+|.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 5567889999999999999999999999999999875544333221 123489999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.. .|++++|+.+|+++++++|+++.++.+++.+++..|+.+++.
T Consensus 209 ~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 209 CHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999 999999999999999999999999999999999999998754
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=1.1e-13 Score=120.62 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=105.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
+..++|.+|...|++++|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.+++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999975 68999999999999999999999999999999876
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+ +.++++..|.+++...| ...+++.+|.++...+++++|+..++
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 135 -TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp -HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred -HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 54 45667788888765433 34567888999999999999998776
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.50 E-value=1.6e-13 Score=121.82 Aligned_cols=127 Identities=14% Similarity=-0.041 Sum_probs=114.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCC
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~--------~GdyeeAee~~erAL~ldP~d 241 (331)
.....++|.+|...+++++|+.+|++++..+|++ +.+++.+|.+++ . .|++++|+.+|++++..+|++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 3457889999999999999999999999998865 567888998865 5 799999999999999999999
Q ss_pred HHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------C
Q 020109 242 GNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVLASYAKFLWDA----------G 291 (331)
Q Consensus 242 ~~vL-----------------~~lA~ll~~~~Gd~deAieyferALeldPd---na~vl~~lA~~L~kl----------G 291 (331)
+.+. ..+|.+++. .|++++|+.+|+++++..|+ ...+++.+|.+|..+ |
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 8777 778999999 99999999999999999998 567999999999987 8
Q ss_pred CchHHHhhhh
Q 020109 292 EDEEEEQDNE 301 (331)
Q Consensus 292 ~~eEa~~~~e 301 (331)
++++|...++
T Consensus 210 ~~~~A~~~~~ 219 (261)
T 3qky_A 210 RYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8899998776
No 82
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.3e-13 Score=120.28 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred hCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 185 NNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 185 ~~gd~ekA~e~yekALel----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
..+++++|+.+|+++++. +|.++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.+++. .|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence 457899999999999998 4567888999999975 68999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+|+.+|+++++++|++..++..+|.++...|++++|...++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877643
No 83
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.48 E-value=3.6e-13 Score=119.75 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=111.9
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
+...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.+++++++..+|+++.++..+|.+++. .|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence 556688999999999999999999999999999975 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+.+|+++++..|++..++..++.++...|++++|...+++
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999999999987763
No 84
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=2.7e-13 Score=102.19 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 020109 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYV 279 (331)
Q Consensus 202 ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~v 279 (331)
++|+++.++..+|.++. ..+++++|..+|+++++++|.++.++..+|.+++. .+++++|+.+|+++++.+|+ +..+
T Consensus 1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHH
Confidence 37889999999999965 68999999999999999999999999999999999 99999999999999999999 9999
Q ss_pred HHHHHHHHHHc-CCchHHHhhhh
Q 020109 280 LASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~kl-G~~eEa~~~~e 301 (331)
+..++.++..+ |++++|...++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999 99999998887
No 85
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.4e-13 Score=105.64 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++..+..+|..++ ..|++++|+.+|++|+.++|+++.++..+|.+++. .|++++|+.+|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445678888998876 68999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.++..+|++++|...++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 9999999999999987763
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=1.9e-13 Score=125.56 Aligned_cols=127 Identities=12% Similarity=0.004 Sum_probs=88.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..+...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+........+..+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999864 689998887777776655554443333344434
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .++.++|+..|+++++.+|++..+++.+|.+|...|++++|...++
T Consensus 196 ~~-~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 196 LX-QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HH-HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh-hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44 4555555555555555555555555555555555555555554443
No 87
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.48 E-value=5.3e-13 Score=127.80 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=115.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++++.++|+++.++..+|.+++
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346678888999999999999999999999999999999998865 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++
T Consensus 356 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 356 K-QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999977764
No 88
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=1e-12 Score=123.21 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=105.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY------------ARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~y------------A~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+.....++|.+|...+++++|+.+|++++..+|+++.++..+ |.++. ..|++++|..+|++++.++|
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-RDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 345677888888888888888888888888888888877666 66654 56888888888888888888
Q ss_pred CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 240 SDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 240 ~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. ++..+|.++.. .|++++|+.+|+++++++|++..+|..+|.++...|++++|...++
T Consensus 289 ~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8854 66778888888 8999999999999999999888999999999999999988887776
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=4e-13 Score=123.39 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+..+..++|.++...+++++|..+|+++|+++|.++. +|.+|+.++. ..|++++|..+|++|++.+|.+..++..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3456778999999999999999999999999999987 8999998864 5688888888888888888888777776666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+...|++++|+.+|+++++.+|+++.+|..++.++...|++++|...++
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 654325888888888888888888888888888888888888888887766
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.46 E-value=3.5e-13 Score=133.86 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=91.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++|++++|+++.++..+|.+++. .|++++|+++|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 68899999999999999999999999999975 68999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++++|++..+++.+|.+|...|++++|...++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999997776
No 91
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.46 E-value=1.3e-12 Score=122.49 Aligned_cols=129 Identities=12% Similarity=0.036 Sum_probs=118.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+......+|..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44557789999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC---YVLASY------------AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna---~vl~~l------------A~~L~klG~~eEa~~~~e~ 302 (331)
+.. .|++++|+.+|+++++++|++. .++..+ |.++...|++++|...++.
T Consensus 104 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 104 LLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999 9999999999999999999988 776655 6669999999999987764
No 92
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.46 E-value=2.2e-13 Score=119.22 Aligned_cols=111 Identities=13% Similarity=0.033 Sum_probs=99.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------NAL-----LLGNYARFLKEVRGDFAKAEELCGRAILA------ 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~-------npe-----al~~yA~lLy~~~GdyeeAee~~erAL~l------ 237 (331)
+.|.|..+++.|+|++|+.+|++||+++|+ +.. +|.++|.++. ..|+|++|+.+|++||++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhcccc
Confidence 467899999999999999999999999999 443 8999999875 689999999999999999
Q ss_pred -CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 238 -NPSDGNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 238 -dP~d~~vL----~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+|+++.+| +..|.++.. .|++++|+..|++|++++|++..+.-.+..+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 999999999 999999999999999999988766555544433
No 93
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=1.7e-12 Score=102.83 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=92.7
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
..+|.++..+..+|.+++ ..+++++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..++
T Consensus 3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence 457889999999999976 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+.+|.++...|++++|...++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999977763
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.5e-12 Score=127.02 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=112.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....+++..|.+.|++++|+.+|+++++.+|.+..++..++.++. ..|++++|+++|++++..+|+++.++..++.++
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4456778888899999999999999999999999988888888865 579999999999999999999999999999998
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.+ .|++++|+++|+++++..|+++.++..++.+|.+.|++++|...+++.
T Consensus 452 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 452 MQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88 899999999999999999999999999999999999999998777644
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=2.3e-13 Score=117.88 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=115.2
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------- 237 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-------- 237 (331)
....++|.+|...+++++|+.+|+++++. +|....++.++|.++. ..|++++|+++|++|+.+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 35778999999999999999999999988 4666778889998865 689999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel--------dPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+|....++..+|.+++. .|++++|+.+|++++++ .|....++..+|.++...|++++|...+++.
T Consensus 123 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp CHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57788899999999999 99999999999999999 7788899999999999999999999766543
No 96
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.3e-12 Score=127.38 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=63.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSD-GNILSL 247 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d-~~vL~~ 247 (331)
...+++..|...|++++|+.+|+++++.+|.++.++..++.++. ..|++++|+++|++++.+ +|++ ..++..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 34444445555555555555555555555555555555554433 345555555555555544 3332 444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+++. .|++++|+++|+++++++|++..++..++.+|...|++++|...++
T Consensus 522 l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 522 LGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5555555 5555555555555555555555555555555555555555554443
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=5.4e-13 Score=122.06 Aligned_cols=126 Identities=14% Similarity=0.021 Sum_probs=112.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC-----
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSD----- 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~-GdyeeAee~~erAL~ldP~d----- 241 (331)
....|+|.+|...|++++|+.+|++||++.|.. ..++.++|.++. .. |++++|+++|++|+.+.|.+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 357799999999999999999999999998754 457888998864 65 99999999999999998865
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 -GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 -~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~-------vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.++.. .|++++|+.+|++++++.|++.. ++..+|.++..+|++++|...++
T Consensus 157 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 157 SNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678899999999 99999999999999999997653 67899999999999999998887
No 98
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=1e-12 Score=109.15 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
++.++..+..+|.+++ ..+++++|+++|++|+.++|+++.++..+|.+++. .|++++|+.+|+++++++|++..+|+.
T Consensus 7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4556788899998876 68999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e 301 (331)
+|.+|..+|++++|...++
T Consensus 85 lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHH
Confidence 9999999999999997655
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=8.6e-13 Score=115.82 Aligned_cols=126 Identities=16% Similarity=0.071 Sum_probs=111.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~l 248 (331)
..++.|..+...|++++|+.+|++++..+|+++ .+++.+|.+++ ..|++++|+..|+++++.+|+++. ++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 467889999999999999999999999999874 68899999876 689999999999999999999875 67888
Q ss_pred HHHHHHH-----------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCch
Q 020109 249 ADLIWQA-----------------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDE 294 (331)
Q Consensus 249 A~ll~~~-----------------~Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~e 294 (331)
|.+++.. .|++++|+.+|+++++..|++..++ ..+|.+|...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 8887641 4789999999999999999988665 57899999999999
Q ss_pred HHHhhhh
Q 020109 295 EEEQDNE 301 (331)
Q Consensus 295 Ea~~~~e 301 (331)
+|...++
T Consensus 165 ~A~~~~~ 171 (225)
T 2yhc_A 165 AVVNRVE 171 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998777
No 100
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4e-13 Score=117.54 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=88.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
.+.+.+++|+.+|+++++++|+++++|+++|.++. ..++ +++|+.+|++||+++|+++.+++.+|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34467899999999999999999999999999865 3444 569999999999999999999999999999
Q ss_pred HHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 254 QAH-----------KDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 254 ~~~-----------Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
. . +++++|+++|++|++++|++...+..+..+
T Consensus 92 ~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 S-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp H-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8 6 489999999999999999998665555433
No 101
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=1.7e-13 Score=129.50 Aligned_cols=124 Identities=15% Similarity=0.047 Sum_probs=88.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----------------LLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----------------eal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
..++|..+...+++++|+.+|++||..+|.+. .++.++|.++. ..++|++|+.+|++||+++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999999987 38889999865 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCchHHHhhhh
Q 020109 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 239 P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G~~eEa~~~~e 301 (331)
|+++.+++.+|.+++. .|++++|+.+|+++++++|++..++..++.+.... +..+++...++
T Consensus 261 p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 261 EKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999885554 44545544443
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=6.3e-13 Score=115.06 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=114.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------- 237 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------- 237 (331)
.....++|.+|...+++++|+.+|++++.. +|....++.++|.++. ..|++++|+++|++++.+
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345789999999999999999999999998 5777888899999865 689999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Q 020109 238 -NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------------------------------------------- 272 (331)
Q Consensus 238 -dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------------------------------------------- 272 (331)
+|....++..+|.+++. .|++++|+.+|++++++
T Consensus 164 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 78888899999999999 99999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|....++..+|.+|...|++++|...++
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 25566789999999999999999998776
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.42 E-value=3e-12 Score=108.84 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=97.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---------- 242 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---------- 242 (331)
.....|+|.+|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++++.+.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4467899999999999999999999999999999999999999975 68999999999999999988877
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 243 ------NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 243 ------~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
.++..+|.+++. .|++++|+.+|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999 99999999999999999997643
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.41 E-value=2e-12 Score=123.84 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=118.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|.++...+++++|+.+|+++++.+|+ +.++..+|.++. ..|++++|.++|++++..+|+++.++..+|.+++.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 3667889999999999999999999999999 999999999865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++
T Consensus 323 -~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 323 -LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987763
No 105
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.40 E-value=1.7e-12 Score=101.74 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
+.|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 46899999999999999999999999965 68999999999999999999999999999999999 99999999999999
Q ss_pred HHhCC--CCHHHHHHHHHHHHHcCCc
Q 020109 270 VKSAP--DDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 270 LeldP--dna~vl~~lA~~L~klG~~ 293 (331)
+++.| .+......+...+..+++.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhccc
Confidence 99998 4566667777777666544
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.40 E-value=4.1e-13 Score=123.14 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=95.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..+.++|..+...+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999965 7899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn 276 (331)
. .|++++|+.+|+++++++|++
T Consensus 84 ~-~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 E-MESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHT
T ss_pred H-cCCHHHHHHHHHHHHHhCccc
Confidence 9 999999999999999999865
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.39 E-value=8.5e-13 Score=121.15 Aligned_cols=129 Identities=9% Similarity=-0.033 Sum_probs=116.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..|...|++++|+.+|++++..+|++.......+..+. ..++.++|+..|++++..+|+++.++..+|.
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~ 227 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL-XQAADTPEIQQLQQQVAENPEDAALATQLAL 227 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH-hhcccCccHHHHHHHHhcCCccHHHHHHHHH
Confidence 677789999999999999999999999999999965555555554443 5688889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+..|.++++.+|++ ..++..++.++..+|+.++|....+
T Consensus 228 ~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 228 QLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 9999 999999999999999999988 8999999999999999999987665
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=2.7e-13 Score=127.80 Aligned_cols=114 Identities=10% Similarity=-0.041 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYAD 250 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------------~~vL~~lA~ 250 (331)
..++++|+.+|++++..+|+++.++.++|.+++ ..+++++|+.+|++|+.++|++ ..++..+|.
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999976 6899999999999999999999 699999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|++++|+.+|++|++++|++..+++.+|.+|..+|++++|...++
T Consensus 205 ~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 205 CHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999998776
No 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.5e-12 Score=123.34 Aligned_cols=129 Identities=13% Similarity=0.131 Sum_probs=112.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|++++..+|.++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.++
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888865 678999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.. .|++++|+.+|+++++..|++..++..+|.++...|++++|...++..
T Consensus 349 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 349 YR-ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TT-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88 999999999999999999999999999999999999999998776633
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=8.5e-12 Score=95.57 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=94.6
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..|++++|.+++++++..+|.++.++..+|.+++
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 446678999999999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn 276 (331)
. .|++++|+.+|+++++.+|++
T Consensus 115 ~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 115 K-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp T-TTCHHHHHHHHHHHHHHSTTC
T ss_pred H-HccHHHHHHHHHHHHccCCCC
Confidence 9 999999999999999999863
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=2.4e-12 Score=132.81 Aligned_cols=115 Identities=16% Similarity=-0.049 Sum_probs=108.4
Q ss_pred HhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 184 ~~~gd~ekA~e~yekAL--------eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
...+++++|+++|++++ +.+|+++.++..+|.++. ..|++++|+++|++|++++|+++.++..+|.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL- 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence 56789999999999999 999999999999999975 67999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+++|++|++++|++..+++++|.+|..+|++++ +..++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 9999999999999999999999999999999999999988 76665
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=4.5e-12 Score=116.31 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=115.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+++.++...+++++|..+|++|++.+|.+..++..++.+.+...|++++|..+|++|++.+|+++.++..++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998887777644346999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKS---AP-DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALel---dP-dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+.+|+++++. .| +...+|..++.++...|+.+++...++
T Consensus 216 -~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 216 -LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp -TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999996 55 488999999999999999999987665
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=6e-12 Score=102.16 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------CY 278 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn-------a~ 278 (331)
.+.++.++|..++ ..|+|++|+++|++||+++|+++.++..+|.+++. .|++++|+++|+++++++|++ +.
T Consensus 7 ~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3556778998876 68999999999999999999999999999999999 999999999999999999865 35
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.++..++++++|...++
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 78899999999999999997765
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.1e-12 Score=122.29 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=120.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++..+|+++.++..+|.+
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY-RENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999965 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCY------VLASYAKFLWD---AGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~------vl~~lA~~L~k---lG~~eEa~~~~e~ 302 (331)
++. .|++++|+.+|+++++..|++.. ++..+|.++.. .|++++|...++.
T Consensus 382 ~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 382 LTD-KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 999 99999999999999999998855 99999999999 9999999987763
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=7.9e-12 Score=97.15 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.|.++..+..+|.+++ ..+++++|+++|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..+++.
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 5667888999998865 68999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e~ 302 (331)
+|.++...|++++|...+++
T Consensus 90 la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999987763
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=113.14 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------- 237 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeld--------P~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------- 237 (331)
.....++|.+|...+++++|+.+|+++++.. |....++..+|.++. ..|++++|+++|++++.+
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457899999999999999999999999984 556777888998865 689999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Q 020109 238 -NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------------------------------------------- 272 (331)
Q Consensus 238 -dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------------------------------------------- 272 (331)
+|..+.++..+|.+++. .|++++|+.+|++++++
T Consensus 190 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 78888899999999999 99999999999999985
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|....++..+|.+|...|++++|...++
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777889999999999999999997765
No 117
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.34 E-value=9.2e-12 Score=100.43 Aligned_cols=90 Identities=11% Similarity=-0.053 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
++.+|..+. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|++|++++|++..+++.+|.+|..
T Consensus 20 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 566777765 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
.|++++|...++
T Consensus 98 ~g~~~~A~~~~~ 109 (121)
T 1hxi_A 98 EHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999999998876
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=112.90 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=114.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------- 238 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld------- 238 (331)
....++|.+|...+++++|+.+|++++.. +|....++..+|.++. ..|++++|+++|++++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778999999999999999999999998 4566778889998865 6899999999999999884
Q ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 239 -PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 239 -P~d~~vL~~lA~ll~~~~Gd~deAieyferALel--------dPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
|....++..+|.+++. .|++++|+++|++++++ .|....++..+|.++...|++++|...+++.
T Consensus 149 ~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp CHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677788999999999 99999999999999999 7788889999999999999999999766543
No 119
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=5.5e-12 Score=96.15 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~v 279 (331)
++..+..+|.+++ ..|++++|+++|++|+.++|+++.++..+|.+++. .|++++|+++|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567888898865 68999999999999999999999999999999999 999999999999999999998 889
Q ss_pred HHHHHHHHHHcCCchHHHhhhh
Q 020109 280 LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++.++..+|+++++...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 9999999999998888876655
No 120
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.34 E-value=5.9e-12 Score=99.52 Aligned_cols=125 Identities=13% Similarity=0.023 Sum_probs=107.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
...++|.+|...+++++|+.+|+++++..+... .++..+|.++. ..|++++|.++|++++.+.+.. .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 457899999999999999999999999866432 46778888865 6899999999999999887653 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.++++++++.+ ....++..++.++...|++++|...++
T Consensus 90 ~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 678899999999 9999999999999998843 235678899999999999999997665
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=1.2e-11 Score=95.07 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=92.2
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
+.+|.++..+..+|.+++ ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence 345667888889998865 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|.++...|++++|...++.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999987763
No 122
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=8.9e-12 Score=118.17 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=103.3
Q ss_pred ccHHHHH--HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 177 GSNNNYS--NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y--~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~--~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.|.|..+ ...++|++|+.+|++|++++|+++.++..++.+++. ..+++++|+++|++|++++|+++.++..++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 3444333 445689999999999999999999999999877543 357788999999999999999999999888766
Q ss_pred HH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. ..+++++|+.+|+++++.+|++..++..+|.+|...|++++|...++
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 54 14788899999999999999999999999999999999999997765
No 123
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.33 E-value=1.6e-11 Score=113.42 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=110.9
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..|...|++++|+.+|++ |.++.++..++.++. ..|++++|+++|+++++.+|++..+....+++
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWV 173 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence 556788999999999999999999998 899999999999865 78999999999999999999998666555544
Q ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 252 IWQA-HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~-~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+.. .|++++|+.+|+++++..|+++.++..+|.++..+|++++|+..+++
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 48999999999999999999999999999999999999999988873
No 124
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.32 E-value=3.5e-11 Score=91.03 Aligned_cols=94 Identities=18% Similarity=0.017 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
.+..+..+|.++. ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..++..+|.
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3567788888865 68999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCchHHHhhhh
Q 020109 286 FLWDAGEDEEEEQDNE 301 (331)
Q Consensus 286 ~L~klG~~eEa~~~~e 301 (331)
++...|++++|...++
T Consensus 81 ~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYE 96 (118)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 9999999999998776
No 125
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=8.2e-12 Score=114.21 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=106.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~------npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL 245 (331)
..+..|...+++++|+.+|++|+++.+. .+.++.++|.++. ..|++++|+.+|++|+.+.|.. +.++
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3466888999999999999999998542 2567888998864 7899999999999999998764 5688
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 246 SLYADLIWQAH-KDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 246 ~~lA~ll~~~~-Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|.++.. . |++++|+.+|++|+++.|.+ ..++..+|.++..+|++++|...+++
T Consensus 121 ~~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 121 FELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999998 8 99999999999999998854 56789999999999999999987763
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.31 E-value=5.7e-11 Score=90.45 Aligned_cols=99 Identities=18% Similarity=0.318 Sum_probs=89.2
Q ss_pred hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 202 ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 202 ldP~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
.+|.+ ..++..+|.++. ..+++++|+++|++++..+|+++.++..+|.+++. .|++++|+.+|+++++..|++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 45665 778888998865 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..++.++...|++++|...+++
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999987763
No 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=2.3e-12 Score=110.24 Aligned_cols=115 Identities=13% Similarity=-0.032 Sum_probs=102.6
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------NILSLY 248 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~----------------~vL~~l 248 (331)
..+.+++|++.|+......+..+..+..+|.+++ ..++|++|+++|++|+.+.|.++ .++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3478889999998888888888999999999876 68999999999999999999998 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .+++++|+.+|+++++++|++..+++.+|.+|..+|++++|...++
T Consensus 95 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 95 ATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999997776
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.7e-11 Score=96.10 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=93.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
..+|.+...+..+|..++ ..+++++|+++|++++.++|++ ..++..+|.+++. .+++++|+.+|+++++++|++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCH
Confidence 457889999999998865 6899999999999999999998 8999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++.+|.++...|++++|...+++
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999987763
No 129
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.7e-11 Score=113.89 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=99.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------- 237 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALel---------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-------- 237 (331)
...++|..|..+|++++|+.+|++|+++ +|.....+.++|.+++ ..|++++|+.+|++++++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccccc
Confidence 3456899999999999999999999986 6777888889998865 689999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCchHHHhhh
Q 020109 238 NPSDGNILSLYADLIWQA-HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA---GEDEEEEQDN 300 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~-~Gd~deAieyferALeldPdna~vl~~lA~~L~kl---G~~eEa~~~~ 300 (331)
.+..+.++...|+++... .+++++|+++|++|++++|+++.++..++.++... ++.++|...+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 345677888888776551 35789999999999999999999988888876544 5555555444
No 130
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=3.3e-11 Score=88.78 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.++.+++.+|.++. ..+++++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45778888898865 68999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcC
Q 020109 285 KFLWDAG 291 (331)
Q Consensus 285 ~~L~klG 291 (331)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987754
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.30 E-value=1.5e-12 Score=127.96 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=108.9
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYA 249 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------------~~vL~~lA 249 (331)
..+++++|+.+|+++++.+|.++..+.++|.+++ ..++|++|+.+|++|+.++|++ ..++..+|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999976 6899999999999999999999 79999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++++ .+++++|+.+|++|++++|++..+++.+|.+|..++++++|...++
T Consensus 325 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~ 375 (457)
T 1kt0_A 325 MCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375 (457)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999998876
No 132
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=7.6e-11 Score=104.66 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=87.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
+.....++|..|...+++++|+.+|+++++ |+++.+++.+|.++. . .+++++|.++|++|++.+ ++.++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 444566777777777777777777777777 667777777777753 5 677777777777777764 6777777
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 248 YADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
+|.+++. ..+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|...++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 7777653 1577777777777777763 67777777777777 777777776554
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.28 E-value=5.4e-11 Score=108.14 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=103.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDG---- 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~---- 242 (331)
..++|.++...+++++|+.+|++++...+.. ..++.++|.++. ..|++++|.++|++|+ ...|++.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 3557788899999999999999999876554 557888998865 6899999999999999 6677754
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG~~eEa 296 (331)
.++..+|.+++. .|++++|+.+|++|+++.++ .+.+++.+|.+|..+|++++|
T Consensus 197 ~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 197 KVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 688899999999 99999999999999998653 278899999999999999999
No 134
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.4e-11 Score=115.24 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=111.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG--- 242 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~--- 242 (331)
.....++|.+|...+++++|+.+|++|+++.+.. ..++.++|.++. ..|++++|+++|++|+.+.+...
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 4568899999999999999999999999985543 457788888864 78999999999999998866443
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 ---NILSLYADLIWQAHKDASRAESYFDQAVK-----SA-PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ---~vL~~lA~ll~~~~Gd~deAieyferALe-----ld-Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.+|++|++ .+ |..+.++..+|.++..+|++++|...++
T Consensus 222 ~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 488899999999 9999999999999999 56 8889999999999999999999997655
No 135
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=1.4e-11 Score=114.46 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=112.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~v 244 (331)
.+...|..+...+++++|+.+|+++++.+|+++ .++..+|.+++ ..|++++|+++|++|+.+ +|....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 356789999999999999999999999999997 47788898865 689999999999999998 6888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------chHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGE-----------------DEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALel------dPdna~vl~~lA~~L~klG~-----------------~eEa~~~~e 301 (331)
+..+|.+++. .|++++|+.+|++++++ .|....++..+|.+|...|+ +++|...++
T Consensus 129 ~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999 99999999999999999 66778899999999999999 888876554
No 136
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=3.4e-11 Score=92.75 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------C 277 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn-------a 277 (331)
..+..+..+|.+++ ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++..|++ .
T Consensus 2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34677888998865 68999999999999999999999999999999999 999999999999999999877 9
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++.+|.++...|++++|...++.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999987763
No 137
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=2e-11 Score=119.95 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=116.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+..+..+++.++...+++++|..+|+++++.+|.++ .+|..|+.++. ..|++++|.++|++|++..|.+..++...+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 456788999999999999999999999999999996 68999999865 5789999999999999999998888777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+...|++++|..+|+++++..|+++.+|..++.++...|+.++|...++
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 654338999999999999999999999999999999999999999998776
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.26 E-value=5.1e-11 Score=93.32 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLAS 282 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~ 282 (331)
.++.+|.+++ ..|++++|..+|++++..+|+++ .++..+|.+++. .|++++|+.+|+++++.+|++ +.+++.
T Consensus 4 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 4567787765 68999999999999999999999 799999999999 999999999999999999999 899999
Q ss_pred HHHHHHHcCCchHHHhhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e~ 302 (331)
+|.++..+|++++|...++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999987763
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.24 E-value=5.8e-11 Score=98.26 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA------------------NPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~l------------------dP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
+..+...|..++ ..|+|++|+.+|.+||.+ +|.++.++..+|.+++. .|++++|+.++++
T Consensus 11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 456677888876 689999999999999999 77888999999999999 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 269 AVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 269 ALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++|+++.+++.+|.+|..+|++++|...++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999999999999999998776
No 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=2.3e-11 Score=111.97 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=107.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
.+.|+|.+|...+++++|+.+|++|+++.+. + ..++.++|.++. . |++++|+++|++|+.+.|.. .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 5678999999999999999999999998543 3 356778888864 5 99999999999999998764 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.. .|++++|+.+|++++++.|.+ ..++..++.++..+|++++|...++
T Consensus 156 ~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 156 ELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788899999999 999999999999999997643 3478889999999999999998887
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.24 E-value=2e-11 Score=102.12 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=106.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIE------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPSD-- 241 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALe------ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l---dP~d-- 241 (331)
.....++|.+|...+++++|+.+|++++. ..|....++.++|.++. ..|++++|+++|++|+.+ .+++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 34577899999999999999999999999 44556778888998865 789999999999999998 4433
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDC----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.+++. .|++++|+.+|++++++.+ .+. .++..+|.++...|++++|...++
T Consensus 105 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 105 AASANAYEVATVALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4568889999999 9999999999999998743 232 346899999999999999986554
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.24 E-value=1.7e-10 Score=93.12 Aligned_cols=94 Identities=17% Similarity=-0.012 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+..+..+|.+++ ..|++++|..+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..+++.+|.+
T Consensus 13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 566778888865 68999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCchHHHhhhhh
Q 020109 287 LWDAGEDEEEEQDNEE 302 (331)
Q Consensus 287 L~klG~~eEa~~~~e~ 302 (331)
+...|++++|...++.
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 91 NMALGKFRAALRDYET 106 (166)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 9999999999987763
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=2.7e-11 Score=110.13 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=101.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILA-------NPSDGNI 244 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~l-------dP~d~~v 244 (331)
+++.++...+++++|+.+|++|+...+.. ..++.++|.++. ..|++++|+++|++|+.. .+..+.+
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 47778888889999999999999975543 236788998865 689999999999999952 2234457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-chHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE-DEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~-~eEa~~~~e 301 (331)
+..+|.+++. .|++++|++++++|+++.+.. +.+++.+|.++..+|+ +++|...++
T Consensus 199 ~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 199 RYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8899999999 999999999999999987644 7899999999999996 488875443
No 144
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=2e-11 Score=111.69 Aligned_cols=126 Identities=13% Similarity=-0.008 Sum_probs=111.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------ 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------ 241 (331)
....|+|.+|...+++++|+.+|++++++.|.... ++.++|.++. ..|++++|+.+|++++.+.|..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 35778999999999999999999999998776543 7888898865 6899999999999999998876
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.++.. .|++++|+.+|++++++.+.. ..++..+|.+|...|++++|...++
T Consensus 267 ~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 267 AQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888999999999 999999999999999996644 6789999999999999999996554
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.22 E-value=1.1e-10 Score=106.91 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++..+..+|..++ ..|++++|+.+|++|+..+|+++.++..+|.+++. .|++++|+.+|++|++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 678889999999876 68999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.+|..+|++++|...++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999987763
No 146
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=4.7e-12 Score=96.51 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=83.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL~~l 248 (331)
...++|..+...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++++.++|++ ..++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999975 6899999999999999999999 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyfer 268 (331)
+.++.. .|++++|+..|++
T Consensus 85 ~~~~~~-~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 85 ELAQGA-VGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHH-HHCCCCCSSSSSS
T ss_pred HHHHHH-HHhHhhhHhHHHH
Confidence 999888 8888877766554
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=4e-10 Score=99.97 Aligned_cols=122 Identities=19% Similarity=0.130 Sum_probs=65.3
Q ss_pred CcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 173 ~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~v 244 (331)
.....++|.+|.. .+++++|+.+|+++++.+ ++.++.++|.++. . .+++++|+++|++|++.+ ++.+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 3344555555555 555555555555555542 5555555555532 3 455555555555555544 4555
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 245 LSLYADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
+..+|.++.. ..+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|..-++
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 5555555443 135555555555555555 234555555555555 555555554443
No 148
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=5.6e-11 Score=104.50 Aligned_cols=115 Identities=8% Similarity=0.064 Sum_probs=101.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNIL 245 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~vL 245 (331)
+...|..+...+++++|+.+|+++++.+|+++ .++..+|.++. ..|++++|.+++++++.+ .|..+.++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34568899999999999999999999999995 56778888865 689999999999999988 56678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE 292 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~ 292 (331)
..+|.+++. .|++++|+.+|++++++.+.. ..++..++.++...|+
T Consensus 87 ~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 999999999 999999999999999987643 4488999999999999
No 149
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=3.1e-11 Score=106.18 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=109.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
...++|.+|...+++++|+.+|+++++..+... .++..+|.++. ..|++++|.+++++++.+.+.. .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 577899999999999999999999999866532 27788888865 6899999999999999988776 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.+|++++++.+.. ..++..++.++...|++++|...++
T Consensus 264 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 264 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 788999999999 999999999999999986632 5688899999999999999997765
No 150
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.19 E-value=6.4e-11 Score=108.34 Aligned_cols=116 Identities=8% Similarity=0.052 Sum_probs=103.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~v 244 (331)
.+.+.|..+...+++++|+.+|+++++.+|+++ .++..+|.+++ ..|++++|..+|++|+.+ .|..+.+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467889999999999999999999999999985 56778888865 689999999999999988 4566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE 292 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~ 292 (331)
+..+|.+++. .|++++|+.+|++++++.|.. +.++..+|.++...|+
T Consensus 90 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 90 SGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 9999999999 999999999999999997743 5589999999999999
No 151
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.19 E-value=1.3e-10 Score=90.16 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=75.5
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 020109 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYV 279 (331)
Q Consensus 202 ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna~v 279 (331)
.+|+++.+++.+|.+++ ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|++++++.| .+...
T Consensus 2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 58999999999999975 68999999999999999999999999999999999 9999999999999999987 45556
Q ss_pred HHHHHHHHHHcCC
Q 020109 280 LASYAKFLWDAGE 292 (331)
Q Consensus 280 l~~lA~~L~klG~ 292 (331)
...+..++...+.
T Consensus 80 ~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 80 LSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc
Confidence 6666666655443
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.18 E-value=1.9e-10 Score=100.60 Aligned_cols=93 Identities=22% Similarity=0.150 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGN-----ILSLYADLIWQAHKDASRAESYFDQAVKS-- 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-------d~~-----vL~~lA~ll~~~~Gd~deAieyferALel-- 272 (331)
...+.+.|..++ ..|+|++|+.+|++||+++|+ +.. +|.++|.++.. .|++++|+..|++||++
T Consensus 11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence 455677888876 579999999999999999999 544 99999999999 99999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVL----ASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl----~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++..+| +++|.+|..+|+++||...++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 99999999 999999999999999997765
No 153
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=3.9e-11 Score=112.18 Aligned_cols=122 Identities=13% Similarity=-0.018 Sum_probs=105.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA---NP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNI 244 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel---dP---~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-------d~~v 244 (331)
..|.++...+++++|+.+|++|+.+ .+ ..+.++..+|.+++ ..|++++|.+++++|+.+.+. .+.+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 4788999999999999999999997 23 35678899999965 689999999999999998544 3458
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.++.. .|++++|+++|++|+++.+... .++.++|.+|..+|++++|...++
T Consensus 187 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 187 HSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8899999999 9999999999999999966332 589999999999999999997665
No 154
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.18 E-value=4.3e-11 Score=111.11 Aligned_cols=126 Identities=12% Similarity=-0.016 Sum_probs=109.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------ 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------ 241 (331)
....++|.+|...+++++|+.+|++++++.|.... ++.++|.++. ..|++++|+++|++++.+.+..
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999999876433 7788898864 6899999999999999998855
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.+++. .|++++|+.+|++++++.+. ...++..+|.+|...|++++|...++
T Consensus 303 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 303 AQSCYSLGNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7788999999999 99999999999999999653 25688999999999999999985433
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.16 E-value=1.1e-09 Score=99.54 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=103.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNI 244 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npea------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~v 244 (331)
.+.+..+...+++++|+.+|+++++..+..... ++.+|.++ ...+++++|+++|++|+.+.+.. ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 456778899999999999999999998876533 34455553 35789999999999999876654 668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV---KSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL---eldPdna----~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+|.++.. .|++++|+.+|++|+ +..|++. .+++++|.+|..+|++++|..-+++
T Consensus 158 ~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 158 ENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999 999999999999999 5567643 6899999999999999999976653
No 156
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=5.2e-11 Score=90.24 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=69.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.|..+...+++++|+.+|+++++.+|+++. ++.++|.++. ..|++++|+++|++++.++|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45677788888888888888888888888888 8888888764 5688888888888888888888776522
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 020109 256 HKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna 277 (331)
+.+.+|+.+|+++++.+|++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCS
T ss_pred -HHHHHHHHHHHHHhccCcccc
Confidence 445677777887777777543
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1e-10 Score=109.67 Aligned_cols=128 Identities=16% Similarity=-0.049 Sum_probs=110.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----- 240 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----- 240 (331)
.....++|.+|...+++++|+.+|++|++..+.. +.++.++|.++. ..|++++|+++|++|+.+.+.
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4568899999999999999999999999985542 346678888864 789999999999999987431
Q ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 241 -DGNILSLYADLIWQAHKDASRAESYFDQAVK-----SAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 241 -d~~vL~~lA~ll~~~~Gd~deAieyferALe-----ldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
...++..+|.++.. .|++++|+.+|++|++ .+|..+.++..+|.++..+|++++|...+++
T Consensus 220 ~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 220 FIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34578889999999 9999999999999999 8888899999999999999999999976663
No 158
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=4.8e-10 Score=82.45 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=74.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|..+|+++++++|+++.++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999975 6899999999999999999999999999999887
Q ss_pred H
Q 020109 254 Q 254 (331)
Q Consensus 254 ~ 254 (331)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 6
No 159
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1e-10 Score=102.41 Aligned_cols=125 Identities=11% Similarity=0.091 Sum_probs=101.9
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----DFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G----dyeeAee~~erAL~ldP~d~~vL~ 246 (331)
|+.....++|.+|...+++++|+.+|+++++. +++.+++++|.++. . + ++++|.++|++|+. +.++.++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 46667788999999999999999999998765 68888899998854 3 6 89999999999954 57888888
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 247 LYADLIWQ---AHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 247 ~lA~ll~~---~~Gd~deAieyferALeldP--dna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
.+|.++.. ..+++++|+++|++|++..| +++.+++.+|.+|.. .+++++|..-++
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988763 14789999999999998888 458888999999988 778888886555
No 160
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=2.3e-10 Score=112.43 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=113.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....+++.++...+++++|..+|++|++..|.+...+...+.+.+...|++++|..+|++|++.+|+++.++..|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 35778999999999999999999999999999888877777665556899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|+.++|..+|++|++..|.++ .+|..+..+....|+.+.+....+
T Consensus 437 ~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 437 H-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp T-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred h-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 9999999999999999977554 489999999999999888875443
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.14 E-value=3.2e-11 Score=95.23 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 221 RGDFAKAEELCGRAILA---NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 221 ~GdyeeAee~~erAL~l---dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.|++++|+.+|++|+++ +|+++.++..+|.+++. .|++++|+.+|+++++++|+++.+++.+|.++..+|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 58899999999999999 69999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
..++
T Consensus 82 ~~~~ 85 (117)
T 3k9i_A 82 ELLL 85 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=8.4e-11 Score=110.99 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=58.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|.+|...+++++|+.+|+++|+++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..++.+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999975 68999999999999999999999999999998555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~ 278 (331)
..++.+++..+|.+++...|++..
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 378889999999999999997653
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=3.7e-10 Score=98.86 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=106.7
Q ss_pred CCCcccccHHHHHHhCC----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--C
Q 020109 171 GGSGFSGSNNNYSNNNH----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANP--S 240 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~g----d~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP--~ 240 (331)
|+.....|+|.+|.. + ++++|+.+|++++ +++++.+++++|.++. . .+++++|+++|++|+..+| +
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~ 123 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDA 123 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence 355667889999988 6 8999999999995 5689999999998864 3 6799999999999999988 4
Q ss_pred CHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CchHHHhhhh
Q 020109 241 DGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-G-----EDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G-----~~eEa~~~~e 301 (331)
++.++..+|.++..- .+++++|+.+|++|++. |.++.+++.+|.+|..- + ++++|..-++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 599999999998762 36899999999999999 77888999999999875 3 7888875443
No 164
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=4e-10 Score=103.67 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=103.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d----~~ 243 (331)
....+..|...+++++|+.+|++++++.+.. ..++.++|.++ ...|++++|+.+|++|+.+.+. + ..
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML-KDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344678999999999999999999997643 44677788775 4689999999999999988543 2 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++..+|.++.. |++++|+++|++|+++.|.. ..++.++|.+|..+|++++|...+++
T Consensus 118 ~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 118 ALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77788888864 99999999999999998743 57889999999999999999976663
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=8.7e-10 Score=100.11 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=99.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npea------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL 245 (331)
+.+..+...+++++|..+|++++...+.++.. +..++.++ ...+++++|..+|++|+.+.+.. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 44677888999999999999999998887763 22355553 35679999999999999975543 3368
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel-------dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+|.++.. .|++++|+.+|++|++. .+..+.+++++|.+|..+|++++|..-++
T Consensus 159 ~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 159 NAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 899999999 99999999999999963 22344688999999999999999997554
No 166
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.03 E-value=1.5e-09 Score=84.63 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 226 KAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 226 eAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|++..+++.+|.+|...|++++|...++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58899999999999999999999999999 9999999999999999999999999999999999999999997665
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=1.1e-09 Score=91.47 Aligned_cols=116 Identities=10% Similarity=0.028 Sum_probs=95.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHc
Q 020109 184 NNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAIL------ANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~------ldP~d~~vL~~lA~ll~~~~ 256 (331)
...|++++|+.+++.... +| ..+.++..+|.++. ..|++++|+.+|++|+. ..|....++..+|.++.. .
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-A 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-T
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-c
Confidence 356899999996655544 56 67888899998865 68999999999999999 556677889999999999 9
Q ss_pred CCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 257 KDASRAESYFDQAVKS---APD----DCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 257 Gd~deAieyferALel---dPd----na~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
|++++|+.+|++++++ .++ ...++..+|.++...|++++|...+++
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999 443 356789999999999999999876653
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=9e-09 Score=104.93 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=103.4
Q ss_pred HHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 183 SNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 183 y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.+.+.+ ++|++++.++|+.+|++..+|+.-+.++.. .++ +++|.+++++|++.+|+++.+|...+++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444544 789999999999999999999999988764 455 9999999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CchHHHhhhh
Q 020109 252 IWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-EDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG-~~eEa~~~~e 301 (331)
+.. .+ ++++|+++++++++.+|.+..+|...+.++...+ .+++|..-.+
T Consensus 117 l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 117 LSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999 99 7799999999999999999999999999999999 6666665433
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.99 E-value=2.1e-09 Score=99.42 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=105.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN--A----LLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PS 240 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n--p----eal~~yA~lLy~~~GdyeeAee~~erAL~ld--------P~ 240 (331)
...++|.+|...|++++|..+|++++...|.. + .++.++|.++. ..|++++|+.+|++++.+. |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 45688899999999999999999999986643 2 23567787754 6899999999999999875 34
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
...++..+|.+++. .|++++|+.++++++++.+. ...++..++.++...|++++|...+++.
T Consensus 134 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 134 HEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677889999999 99999999999999999874 3467889999999999999999776643
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.98 E-value=2.1e-10 Score=113.72 Aligned_cols=103 Identities=14% Similarity=0.020 Sum_probs=90.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|.+|...+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++..++.+
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999975 68999999999999999999999999999988
Q ss_pred --HHHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 020109 252 --IWQAHKDASRAESYFD-----------QAVKSAPDD 276 (331)
Q Consensus 252 --l~~~~Gd~deAieyfe-----------rALeldPdn 276 (331)
+.. .+++++|+++++ ++++++|+.
T Consensus 118 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 118 NKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHH-HHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 777 899999999999 888888753
No 171
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1.5e-08 Score=96.23 Aligned_cols=121 Identities=12% Similarity=-0.030 Sum_probs=106.0
Q ss_pred cHHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Q 020109 178 SNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLI-- 252 (331)
Q Consensus 178 N~A~~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~lA~ll-- 252 (331)
++.+...+.+.+ ++|+.++.++|.+||++..+|+.-+.++. ..+ ++++|+++++++|.++|++..++...++++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 344444555655 79999999999999999999999998875 456 999999999999999999999999999999
Q ss_pred --HHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch--HHHhhh
Q 020109 253 --WQAH---KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE--EEEQDN 300 (331)
Q Consensus 253 --~~~~---Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e--Ea~~~~ 300 (331)
.. . +++++++++++++++.+|.+..+|...+.++...+.++ ++..-+
T Consensus 116 ~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 116 IMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp HHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 65 6 78999999999999999999999999999999999887 665433
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.96 E-value=2.4e-09 Score=102.95 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAIL----------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~----------------ldP~d~~vL~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+..+..+|..++ ..++|++|+++|++|++ ++|.++.++..+|.+++. .+++++|+++|++|+
T Consensus 223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 455778888865 68999999999999999 888999999999999999 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 271 KSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 271 eldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++|+++.+++.+|.+|..++++++|...++.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999988763
No 173
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=2.7e-09 Score=99.85 Aligned_cols=98 Identities=13% Similarity=-0.022 Sum_probs=87.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANP--G----NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSDGN 243 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP--~----npeal~~yA~lLy~~~GdyeeAee~~erAL~-----ldP~d~~ 243 (331)
...|+|.+|...+++++|+.+|++|+++.+ + ...++.++|.++. ..|++++|+++|++|+. .+|..+.
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 467899999999999999999999999743 2 2456778898865 68999999999999999 8899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.+++. .|++++|+.+|++++++.+
T Consensus 263 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 263 VLFGLSWTLCK-AGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999854
No 174
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.95 E-value=4.2e-09 Score=97.29 Aligned_cols=125 Identities=12% Similarity=0.162 Sum_probs=103.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe-----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~v 244 (331)
....|..+...+++++|..++++++...|.+.. ++..+|.++. ..|++++|+.++++|+.+.|... .+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345678888999999999999999999886532 4567777754 68999999999999998776432 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSA--------PDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeld--------Pdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+|.+++. .|++++|+.+|++++++. |....++..++.+++..|++++|...+++
T Consensus 96 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 96 LIQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6788999999 999999999999999986 34556788899999999999999977663
No 175
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=4.2e-09 Score=83.08 Aligned_cols=73 Identities=19% Similarity=0.055 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 203 NPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~Gd---yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+|+|+.++..||.+++. .++ .++|..++++|+++||+++.++..+|..+++ .|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 79999999999999874 444 6999999999999999999999999999999 9999999999999999999843
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=4.3e-09 Score=107.28 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=103.0
Q ss_pred cccHHHHHHhCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH
Q 020109 176 SGSNNNYSNNNHG----------SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd----------~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~ 243 (331)
-.+.+.++...++ +++|+++++++|+.+|++..+|+.-+.++. ..+ ++++|.+++++++++||.|..
T Consensus 66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~ 144 (567)
T 1dce_A 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFH 144 (567)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhcccccc
Confidence 3445566666666 899999999999999999999999998875 578 779999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 244 ILSLYADLIWQAHK-DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 244 vL~~lA~ll~~~~G-d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+|...++++.. .+ .+++|+++++++++.+|.+..+|..++.++..+
T Consensus 145 aW~~R~~~l~~-l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 145 CWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999 88 999999999999999999999999999999986
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.1e-09 Score=103.61 Aligned_cols=126 Identities=10% Similarity=-0.145 Sum_probs=108.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLI 252 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--~~vL~~lA~ll 252 (331)
+.-.||..|...|+|++|.+.|+.++..+|++. ..+.+|.+++ ..++|++|+.+|++++...+.. ..+++.+|.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 445689999999999999999999999999988 8888998865 6899999999999887753221 34789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PD-DCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pd-na~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.. .|++++|+.+|++++... |. ...+++.+|.++..+|+.++|...++..
T Consensus 182 ~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 AN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99 999999999999999654 54 6679999999999999999999877643
No 178
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.91 E-value=1.8e-08 Score=76.09 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL--ASYAKFL 287 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl--~~lA~~L 287 (331)
+..|..+. ..+++++|+++|+++++.+|+++. ++..+|.+++. .|++++|+++|+++++++|++..++ ..++.++
T Consensus 4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34566654 679999999999999999999999 99999999999 9999999999999999999999887 4444444
Q ss_pred HHcC
Q 020109 288 WDAG 291 (331)
Q Consensus 288 ~klG 291 (331)
....
T Consensus 82 ~~~~ 85 (99)
T 2kc7_A 82 NFYN 85 (99)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=7.6e-09 Score=81.43 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=84.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DG 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~ 242 (331)
...++|.+|...+++++|+.+|++++...+.. ..++.++|.++. ..+++++|.+++++++.+.+. .+
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 46789999999999999999999999986543 556778888865 689999999999999977432 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
.++..+|.+++. .|++++|++++++++++...
T Consensus 130 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence 678889999999 99999999999999988553
No 180
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=4e-08 Score=93.33 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFA--KAEELCGRAILANPSDGNILSLYADLIWQAHKD------ 258 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdye--eAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd------ 258 (331)
+++++++.++.++|+.+|+|..+|..-+.++. ..+.++ ++.++++++|+.+|.|..++...++++.. .++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhh
Confidence 67899999999999999999999999988875 578888 99999999999999999999999999988 887
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+++++++++++++.+|.|..+|..+..++...|+..++.
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 999999999999999999999999999999999865544
No 181
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.83 E-value=5.4e-08 Score=94.57 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=69.0
Q ss_pred CCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCH
Q 020109 172 GSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----GDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 172 ~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~-----GdyeeAee~~erAL~ldP~d~ 242 (331)
+.....++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++. .. +++++|..+|++|++. .++
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD-KGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH-HCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 34445556666665 56666666666666543 45556666665543 33 5666666666666554 345
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhh
Q 020109 243 NILSLYADLIWQAHK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDN 300 (331)
Q Consensus 243 ~vL~~lA~ll~~~~G---d~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~ 300 (331)
.++..+|.++.. .| ++++|+++|++|++. .++.+++.+|.+|.. .+++++|..-+
T Consensus 329 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 329 TAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555566666555 44 556666666666655 455566666666666 55565555443
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.83 E-value=4.5e-09 Score=91.81 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=73.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA----------SRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~----------deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
..+.+++|.+.|++|++++|+++.++..+|.++.. .+++ ++|+..|++||+++|++..+|+++|.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988 7765 599999999999999999999999999998
Q ss_pred cC-----------CchHHHhhhh
Q 020109 290 AG-----------EDEEEEQDNE 301 (331)
Q Consensus 290 lG-----------~~eEa~~~~e 301 (331)
+| ++++|+.-++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHH
Confidence 85 7888886554
No 183
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.82 E-value=2.3e-08 Score=97.71 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=97.4
Q ss_pred CCcccccHHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHH
Q 020109 172 GSGFSGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR----GDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g---d~ekA~e~yekALeldP~npeal~~yA~lLy~~~----GdyeeAee~~erAL~ldP~d~~v 244 (331)
++....++|.+|...+ ++++|+.+|+++++.+|.++..++++|.++. .. +++++|.++|++|. |.++.+
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 4447788999998888 8899999999999999988888888888753 22 58888888888887 888888
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CchHHHhhhh
Q 020109 245 LSLYADLIW---QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-----EDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~---~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG-----~~eEa~~~~e 301 (331)
+..+|.+++ . .+++++|+.+|++|++.. ++.+++.+|.+|. .| ++++|..-++
T Consensus 251 ~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 251 WVSLAQLLYDFPE-LGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 888888743 4 788888888888888654 7888888888887 45 7777776554
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.81 E-value=3.9e-08 Score=95.58 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=101.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C-C
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH-K-D 258 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~-G-d 258 (331)
.+.+....++|+.++.++|.+||++..+|+.-+.++. ..+ ++++++++++++|..+|++..++...++++.. . + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCC
Confidence 3444455689999999999999999999999998875 456 69999999999999999999999999999988 6 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+++++++++++++.+|.|..+|...+.++...+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998876
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.79 E-value=2.9e-08 Score=97.03 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=97.6
Q ss_pred ccHHHHHHhC----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 177 GSNNNYSNNN----HGSSSTDAYYEKMIEANPGNALLLGNYARFLK--EVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~~~----gd~ekA~e~yekALeldP~npeal~~yA~lLy--~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.|+|.+|... +++++|+.+|+++. |+++.+++++|.+++ ...+++++|.++|++|+.. .++.++..+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 7888888765 78899999999988 899999999998854 4578999999999999865 48999999999
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 251 LIWQAHK-----DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~G-----d~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++.. | ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|..-++
T Consensus 292 ~y~~--G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 292 LYYE--GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHH--CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHc--CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 8875 5 9999999999999 8899999999988887 337777776554
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.79 E-value=1.1e-07 Score=92.40 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=72.9
Q ss_pred CCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Q 020109 172 GSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 172 ~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~ 243 (331)
+.....++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++. . .+++++|+++|++|+.. +++.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYH-EGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 34455566666666 66666666666666553 45666666666543 3 45666666666666554 3566
Q ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 244 ILSLYADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++..+|.+++. ..+++++|+++|+++++. .++.+++.+|.+|.. .+++++|..-++
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 66666666553 134666666666666654 356666666666666 556666654443
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.78 E-value=1.5e-08 Score=102.07 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=100.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH-
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI- 244 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v- 244 (331)
.+.-+..+|+|++|+..|+++|++ .|+++. .+.++|.++ ..+|+|++|+.++++||.+ .|++|.+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL-SYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344577899999999999999996 455554 567788885 4789999999999999965 5777765
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 245 --LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDCY---VLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 245 --L~~lA~ll~~~~Gd~deAieyferALel-----dPdna~---vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+..+|.+++. +|++++|+.+|++|+++ .|+++. +...++.++..++.+++|+..++..
T Consensus 394 ~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 394 MAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999 99999999999999986 566664 4568889999999999999777643
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=2.5e-08 Score=77.18 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+++.++..+|.+++. .|++++|+.+|+++++++|++..+|+.+|.+|...|++++|...++
T Consensus 2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 589999999999999999 9999999999999999999999999999999999999999997665
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.73 E-value=2.5e-07 Score=89.11 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=95.0
Q ss_pred HHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 182 YSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 182 ~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...+.+.+ ++|+.++.++|.+||++..+|+.-+.++.. .+. ++++..++++++..+|.++.++...++
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666 589999999999999999998887777643 233 688999999999999999999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-hHHHh
Q 020109 251 LIWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED-EEEEQ 298 (331)
Q Consensus 251 ll~~~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG~~-eEa~~ 298 (331)
++.. .+ ++++++++++++++.+|.|..+|...+.++...+.. +++..
T Consensus 117 lL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 117 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9888 87 489999999999999999999999999999999884 55553
No 190
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=6.9e-08 Score=93.83 Aligned_cols=116 Identities=6% Similarity=-0.045 Sum_probs=104.9
Q ss_pred cccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.+.+.++...+ .+++++.++.++|..+|++..+|..-+.++....+ ++++++++++++++++|.|..++...++++.
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYS 170 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344566777777 59999999999999999999999999988765436 8999999999999999999999999999998
Q ss_pred HHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 254 QAHKDAS--------RAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 254 ~~~Gd~d--------eAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
. .+.++ +++++++++++.+|.|..+|.+++.++...++
T Consensus 171 ~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 171 H-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp H-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred H-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 8 77777 99999999999999999999999999999986
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=1.5e-07 Score=90.76 Aligned_cols=110 Identities=12% Similarity=-0.069 Sum_probs=69.7
Q ss_pred HHHHHHhCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNH--GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~g--d~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd-yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.++...+ .+++++.++.++|+.||.|..+|..-+.++. ..+. ++++.++++++|..+|.|..++...+.++..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~- 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ- 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-
Confidence 334444444 3567777777777777777777766665553 3455 4667777777777777777777776666665
Q ss_pred c--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 256 H--------------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~--------------Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
. +.++++++++++++..+|+|..+|..+..++...
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 3466777777777777777777765554444443
No 192
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.9e-07 Score=81.09 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=86.8
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~G---dyeeAee~~erAL~ld-P-~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....+...|++.+..++.+....++||.++.. .. +..+++.+++.++..+ | ++.++++++|..+++ .++|++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence 45688899999999999999999999998763 45 6779999999999999 7 679999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~ 288 (331)
..|++++++++|++..+..-.-.+-.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999987766544443
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=4.3e-07 Score=74.86 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=82.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDASRAE 263 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---~~Gd~deAi 263 (331)
+++++|+.+|+++.+.... .+. +|.++. .....++|.++|++|... .++.++..+|.++.. ..+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5778888888888887643 333 776643 456778888888888877 688888888888775 147888899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++|++|.+. .++.++++++.+|.. ..++++|..-++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 999888887 678888888888888 788888875444
No 194
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.62 E-value=9e-08 Score=91.43 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 020109 187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDA 259 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~Gd~ 259 (331)
.....|+..+++||++||+ +..++..+|.+++.+ .|+.++|+++|++||+++|+. +.+++.||..+....+++
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3568999999999999999 777999999886532 599999999999999999975 999999999987724999
Q ss_pred HHHHHHHHHHHHhCCC
Q 020109 260 SRAESYFDQAVKSAPD 275 (331)
Q Consensus 260 deAieyferALeldPd 275 (331)
++|..++++|++.+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999999886
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=4e-07 Score=75.01 Aligned_cols=105 Identities=14% Similarity=0.040 Sum_probs=87.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
|+.... +|.+|.....+++|+.+|++|.+. +++.+++++|.++. . .+|+++|.++|++|.+. .++.+..
T Consensus 25 g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 25 NEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp TCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 344444 899999999999999999999987 78999999999964 4 68999999999999987 6899999
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 247 LYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 247 ~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.+|.++..- .+++++|+++|++|.+.. +..+...++
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999998761 489999999999999984 444444443
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.59 E-value=2.3e-07 Score=88.89 Aligned_cols=122 Identities=10% Similarity=-0.022 Sum_probs=102.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH-HHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGN-ILSL 247 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-----d~~-vL~~ 247 (331)
...+|..|...|++++|+..+.+.|..+| ++.+++...+.++ ...|+.+.|.+.++++.+.+|+ +.. +...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~-L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA-LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 45788999999999999999999999997 7888888888886 4789999999999999999993 333 3333
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 248 YADLIWQAHK--DASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 248 lA~ll~~~~G--d~deAieyferALeldPd--na~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
-||+.+. .| ++++|..+|+++.+..|+ ....+++ +++.+|++++|+.+++.
T Consensus 182 ea~v~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 182 ESYIKFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 4666776 66 999999999999998887 3445555 89999999999998863
No 197
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.58 E-value=7.1e-07 Score=70.32 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ld-------P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
++.-.+.+|.+++ ..++|..|...|++|++.. +..+.++..+|.++++ .|++++|+.++++|++++|++..
T Consensus 4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 3455667777766 5788888888888888753 3467778888888888 88888888888888888888888
Q ss_pred HHHHHH
Q 020109 279 VLASYA 284 (331)
Q Consensus 279 vl~~lA 284 (331)
++.++.
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 877776
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=2.7e-07 Score=87.25 Aligned_cols=114 Identities=10% Similarity=-0.137 Sum_probs=95.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PS-DGNILSLYA 249 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeld-P~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~-d~~vL~~lA 249 (331)
..+++|..+.+.+++++|+.+|++++... |.. ..+++++|.++. ..|++++|+.+|++++... |. .+++++.+|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLA 215 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 77899999999999999999999887653 221 347888898865 7899999999999999654 55 677999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.++.. +|+.++|...|++++..+|+ ..++..+...-+...
T Consensus 216 laL~~-lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 216 MARRS-QGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLK 255 (282)
T ss_dssp HHHHH-HTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCC
T ss_pred HHHHH-cCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCC
Confidence 99999 99999999999999999999 887777755544444
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.51 E-value=1.4e-06 Score=85.58 Aligned_cols=124 Identities=7% Similarity=-0.066 Sum_probs=94.1
Q ss_pred cccHHHHHHhC---CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cC--CHH--HH-HHHHH--HHHHhCCCCHH
Q 020109 176 SGSNNNYSNNN---HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RG--DFA--KA-EELCG--RAILANPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~---gd~ekA~e~yekALeldP~npeal~~yA~lLy~~--~G--dye--eA-ee~~e--rAL~ldP~d~~ 243 (331)
.+-.|..+..+ .++.+|+.+|++||++||+++.++..++.++... .+ ... .+ ...++ .++..+|.++.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 44444554443 3458999999999999999999998777654211 11 111 11 11222 23467899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|..++. .|++++|+.++++|++++| +...|..+|.++.-.|++++|...++
T Consensus 279 ~~~alal~~l~-~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 279 IYQIKAVSALV-KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988 8999999999999999997 57788899999999999999997775
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=9.3e-07 Score=87.71 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Q 020109 186 NHGSSSTDAYYEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI---LSLYA 249 (331)
Q Consensus 186 ~gd~ekA~e~yekALel-----dP~npea---l~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v---L~~lA 249 (331)
.|+|++|+..|+++|++ .|+++.. +.++|.++ ..+|+|++|+.+++++|++ .|++|.+ +.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC-LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46789999999999995 5666654 56778885 4789999999999999954 5666665 66889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKS-----APDDCYVL 280 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALel-----dPdna~vl 280 (331)
.+++. +|++++|+.+|+||+++ .|+++.+.
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999 99999999999999987 46666554
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=8.6e-07 Score=69.68 Aligned_cols=73 Identities=12% Similarity=-0.010 Sum_probs=63.7
Q ss_pred CCCcccccHHHHHHhCCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 171 GGSGFSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd---~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v 244 (331)
.|+..+..||..+.-.++ .++|..++++||++||+++.++..+|.+++ ..|+|++|..+|++++..+|.++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 456677788888865554 699999999999999999999999999976 6899999999999999999996553
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.40 E-value=2e-06 Score=67.70 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=65.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeld-------P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
-..+|.+++.+++|..|+..|++|++.. +..+.++..||.+++ ..|++++|..++++|++++|+++.++.++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4578999999999999999999999974 345788899999976 68999999999999999999999998877
Q ss_pred HH
Q 020109 249 AD 250 (331)
Q Consensus 249 A~ 250 (331)
+.
T Consensus 87 ~~ 88 (104)
T 2v5f_A 87 KY 88 (104)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.39 E-value=2e-06 Score=82.11 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEV----RG------DFAKAEELCGRAILANPS--DGNILSLYADLIWQAH-----KDASRAESY 265 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~----~G------dyeeAee~~erAL~ldP~--d~~vL~~lA~ll~~~~-----Gd~deAiey 265 (331)
+|+++++++..|....-. .+ ...+|...+++||++||+ +..++..+|.+|.. . |+.++|.++
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTA 226 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHH
Confidence 455567666666553211 12 457899999999999999 77799999999887 6 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHc-CCchHHHhhhh
Q 020109 266 FDQAVKSAPDD-CYVLASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 266 ferALeldPdn-a~vl~~lA~~L~kl-G~~eEa~~~~e 301 (331)
|+||++++|+. ..+++.||.+|... +++++++..++
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~ 264 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALD 264 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999975 99999999999985 89999987776
No 204
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.34 E-value=2.8e-06 Score=88.80 Aligned_cols=110 Identities=8% Similarity=-0.018 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE-ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAe-e~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
++....|++||...|.++.+|..||.++. ..++.++|. +.|++|+...|.+..++..||.+... .+++++|.+.|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45678999999999999999999999975 578888996 99999999999999999999999999 9999999999999
Q ss_pred HHHh-----------CCC-----------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 269 AVKS-----------APD-----------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 269 ALel-----------dPd-----------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|. .+.+|..++.+..+.++.+.|...++
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9986 253 45689999999999999988887765
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.34 E-value=1.5e-06 Score=90.81 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=108.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel-dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
--.|+++....++.+.|...|.+|++. .+....++..+|.+-+...+++++|..+|+++++..|+++.++..|+.+.+.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 345677777888999999999999998 5556777777787765444669999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++.++|..+|++|++..| ....+|..+..+....|+.+.+....+
T Consensus 517 -~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 517 -VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp -HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999998 466899999999999999988887665
No 206
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1e-06 Score=82.37 Aligned_cols=123 Identities=7% Similarity=0.021 Sum_probs=89.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----------------LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npe-----------------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
.-|+-+.+.|+|++|+..|.+++..+|.... ++..+|.++. ..|++++|.+++.+++.+.+.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Confidence 3466677778888888888888888887532 4667787754 678888888888888876655
Q ss_pred CHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 241 DGN------ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 241 d~~------vL~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
... ++..++.++.. .+++++|+.++++++...+ ..+.++..+|.+|...|++++|...+++
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 332 33445555555 7888888888888887643 3356777888888888888888866553
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.4e-06 Score=81.48 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~~ 243 (331)
+.++|..|...|++++|..+|++++...+.... +...++.+ +...+++++|.+++++++...+. -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF-EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH-CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 578999999999999999999999998666433 23344444 34578999999999999876443 356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel------dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.++.. .|++++|+.++++++.. .+....++...+.+|..++++++|...++
T Consensus 137 ~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 137 LSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 78899999999 99999999999999887 34456789999999999999999987654
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=1.7e-06 Score=85.45 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=79.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---H
Q 020109 182 YSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI---L 245 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v---L 245 (331)
-+..+++|++|+..|+++|++ .|+++. .+.++|.++ ..+|+|++|+.+++++|.+ .|++|.+ +
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y-~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC-INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 355678999999999999985 566655 456777775 4689999999999999954 5777775 6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS-----APDDCYVLA 281 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel-----dPdna~vl~ 281 (331)
..+|.+++. +|++++|+.+|++|+++ -|+++.+..
T Consensus 375 ~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 678999999 99999999999999987 567775543
No 209
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.26 E-value=3.6e-06 Score=80.57 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=100.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADL 251 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~~vL~~lA~l 251 (331)
..+.-|+.|+.. .|+.+|++.+...+.++..+..+|.++. ..|++++|++++.+.|..+| ++.+++...+.+
T Consensus 72 ~a~~~la~~~~~-----~a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 72 KVLDLYVQFLDT-----KNIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp HHHHHHHHHHTT-----TCCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----cHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 356677777752 2899999998887677777777888765 68999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--CchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAG--EDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG--~~eEa~~~~e~~ 303 (331)
+.+ +|+.++|.++++++.+.+|+ ...++..-+++....| ++++|...++|+
T Consensus 146 ~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 146 ALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 999 99999999999999999993 3344444465576666 899999888854
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=2.7e-06 Score=85.59 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSD 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~-----ldP~d 241 (331)
.+.|+|..|..+|+|++|+.+|+++|++ -|++|. .++++|.++. .+|+|++|+.+|++|+. +.|++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3789999999999999999999999986 455554 5678898865 78999999999999985 57888
Q ss_pred HHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 242 GNILS---LYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 242 ~~vL~---~lA~ll~~~~Gd~deAieyferALeld 273 (331)
|.+.. +++.++.. ++.+++|+..|.+|.+..
T Consensus 432 p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 88765 56666677 899999999999886654
No 211
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.12 E-value=4.1e-05 Score=76.37 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=100.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL----------------------------------- 217 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL----------------------------------- 217 (331)
..+-.+|+.++...++.++|...|++|+.. |.+..++..|+.+.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 456778999999999999999999999999 99877666665431
Q ss_pred ----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 218 ----KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 218 ----y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
....++.++|...|++| ...+....++..+|.+-+...++.++|...|+++++..|+++..|..++.++...|+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 01245688899999999 4333466777777877776244799999999999999999998888899988888888
Q ss_pred hHHHhhhh
Q 020109 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~e 301 (331)
+.+....+
T Consensus 371 ~~aR~l~e 378 (493)
T 2uy1_A 371 ENARALFK 378 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776555
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.11 E-value=2.2e-05 Score=88.24 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=87.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------- 241 (331)
.+...+++|+.+...|++++|+.+|.+| +++..+...+.++ ...|+|++|.++|.+|.+.+++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~-~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 3556778888888888888888888775 7888888888885 46788888888888877666331
Q ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 -----------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 -----------------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+...|..++. .|+|++|..+|.+| ..|..++.+|.++|++++|.+..+
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1223456777777 88888888888885 478888888888888888886654
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=1.3e-05 Score=69.49 Aligned_cols=79 Identities=8% Similarity=-0.070 Sum_probs=68.1
Q ss_pred CCcccccHHHHHHhCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH---GSSSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g---d~ekA~e~yekALeld-P-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
......|||.++.+.+ ++++++.+++..++.+ | .+.++++++|..++ ..++|++|.+|++++|+++|+|..+..
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3445779999999988 6679999999999999 7 67899999998876 689999999999999999999998876
Q ss_pred HHHHH
Q 020109 247 LYADL 251 (331)
Q Consensus 247 ~lA~l 251 (331)
..-.+
T Consensus 110 Lk~~i 114 (152)
T 1pc2_A 110 LERLI 114 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.96 E-value=3.3e-05 Score=86.76 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=61.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAie 264 (331)
..+++++|.+++++ .+++.+|+.||..+ +..|++++|+.+|.+| +|+..+...+.++.+ .|++++|++
T Consensus 1088 ~i~nldrAiE~Aer-----vn~p~vWsqLAKAq-l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAER-----CNEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHh-----cCCHHHHHHHHHHH-HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHH
Confidence 44444444444443 35677777777774 4677888888888776 677777777877777 788888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 265 YFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 265 yferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+|..|++..++. .+-..+|.+|.++++.+
T Consensus 1156 yL~mArk~~~e~-~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1156 YLQMARKKARES-YVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHHHhhcccc-cccHHHHHHHHhhcCHH
Confidence 887777776432 11223555555554444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.96 E-value=1.2e-05 Score=79.73 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 020109 221 RGDFAKAEELCGRAIL-----ANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDC---YVLASYA 284 (331)
Q Consensus 221 ~GdyeeAee~~erAL~-----ldP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel-----dPdna---~vl~~lA 284 (331)
.|+|++|+.+|+++++ +.|+++.+ +..+|.++.. +|+|++|+.++++++++ -|+++ ..+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4789999999999997 46777765 5577899999 99999999999999987 34555 4588999
Q ss_pred HHHHHcCCchHHHhhhh
Q 020109 285 KFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 285 ~~L~klG~~eEa~~~~e 301 (331)
.+|+.+|++++|+..++
T Consensus 390 ~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 390 RLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHH
Confidence 99999999999997554
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=7.3e-05 Score=62.97 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G---dyeeAee~~erAL~ld-P-~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.....+...|.+++..++.+....++||..+-. .. +..+++.+++..+..+ | ..-++++.+|..+++ .|+|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHH
Confidence 345688889999999999999999999988643 33 3455999999999887 5 678899999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~ 286 (331)
|..|++.+|+.+|+|..+..-...+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998776554433
No 217
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.92 E-value=9.4e-05 Score=73.78 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=104.6
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
.+--+|++++...++.+.|...|++| ...+.....+..+|.+-+...++.+.|..+|+++++..|+++.++..|+.+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34567888888888999999999999 43334667777788876656668999999999999999999999999999888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
. .|+.+.|..+|+++ +....+|..+..+....|+.+.+...++...
T Consensus 366 ~-~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 R-IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp H-HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8 99999999999998 4568899999999999999888876555333
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.86 E-value=8.1e-05 Score=73.01 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=66.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
..+|.++.++..+|..+. ..|++++|..++++|+.++|+ ..++..+|+++.. .|++++|++.|++|+.++|...
T Consensus 271 ~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcC
Confidence 567999999999887754 579999999999999999975 6778899999998 9999999999999999999664
No 219
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.86 E-value=5.3e-05 Score=75.95 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=51.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+.|..|...|.|++|+.+|.++ ..+..+|.+++ ..|+|++|.+.|++| +++.+|.....++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 4556666667777777777777765 35566666665 457777777777777 355555544444444
Q ss_pred -----------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 255 -----------------------------AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 255 -----------------------------~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
..|++++|+.+|++++.+++....++..++.+|.+
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 05555555555555555555555555555555443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.76 E-value=5.6e-05 Score=74.52 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=67.9
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 020109 220 VRGDFAKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDC---YVLASY 283 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~l-----dP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel-----dPdna---~vl~~l 283 (331)
.+|+|++|+.+|++++++ .|+++.+ +..+|.++.. +|++++|+.++++++++ -|+++ ..+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 579999999999999964 5677765 5667888888 99999999999999977 34555 457899
Q ss_pred HHHHHHcCCchHHHhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e 301 (331)
|.+|+.+|++++|+..++
T Consensus 378 a~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 999999999999997554
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.67 E-value=0.00026 Score=71.02 Aligned_cols=119 Identities=9% Similarity=-0.103 Sum_probs=79.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHHcCCHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-----------------------------FLKEVRGDFA 225 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~-----------------------------lLy~~~Gdye 225 (331)
....+|.+|.+.|+++.|+++|++| +++..|..... -+|+..|+++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence 3557899999999999999999999 34544333111 2356789999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC--CC-HHHHHHHHHHHHHc--CCchHHHh
Q 020109 226 KAEELCGRAILANPSDGNILSLYADLIWQA-HKDASRAESYFDQAVKSAP--DD-CYVLASYAKFLWDA--GEDEEEEQ 298 (331)
Q Consensus 226 eAee~~erAL~ldP~d~~vL~~lA~ll~~~-~Gd~deAieyferALeldP--dn-a~vl~~lA~~L~kl--G~~eEa~~ 298 (331)
+|..++++++.+++.....+..+|.++.+- .++..++++.|...+.+.| .- ..++.....++.-. ++++.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999999999999999999999988540 2455555555554444433 01 11333344444444 55666653
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.64 E-value=0.00027 Score=62.23 Aligned_cols=30 Identities=10% Similarity=-0.110 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 276 DCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 276 na~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
+.++.|.++.||.+++++++|..+++.+-.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 447889999999999999999999885433
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.59 E-value=0.00028 Score=61.58 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=88.3
Q ss_pred ccHHHHHHhCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 177 GSNNNYSNNNHGS------SSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 177 ~N~A~~y~~~gd~------ekA~e~yekALeldP~n--------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
-+|...+++.|+. ++-.+.|++|+..-|-. ...|..||.+. ..+|.++|.+.|+.|+.+....+
T Consensus 17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFA 94 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFA 94 (161)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBH
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHH
Confidence 3577778888888 88889999999986642 34456667652 45899999999999998888889
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
.++..+|.+-.+ +|+..+|.+.+.+|+.+.|.....+ ..|..-++.|+.
T Consensus 95 Kiwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~ 143 (161)
T 4h7y_A 95 FVHISFAQFELS-QGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKK 143 (161)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCC
Confidence 999999999998 9999999999999999998766554 344445555553
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.55 E-value=0.00085 Score=58.55 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 226 KAEELCGRAILANPS--------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 226 eAee~~erAL~ldP~--------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+-.+.|++|+..-|- .++.+..||.+ .. .+|.++|.+.|+.|+++....+.+|..+|.|..++|+...|.
T Consensus 37 rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 37 KLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 334678888877663 56667778865 44 799999999999999998888999999999999999999988
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
+.+.
T Consensus 115 kILg 118 (161)
T 4h7y_A 115 QLLQ 118 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.32 E-value=0.001 Score=58.58 Aligned_cols=106 Identities=13% Similarity=-0.016 Sum_probs=80.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILANP---------- 239 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npe---------al~~yA~lLy~~~GdyeeAee~~erAL~ldP---------- 239 (331)
-.+-+...+.|+.|+.....++....+++. ++..+|+.+| .+++|.+|+.+|++||+..-
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345556678999999999997777544444 6788899987 68999999999999864321
Q ss_pred ---------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 240 ---------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 240 ---------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+.++.+..|.++.. .+++++|+.+++..-. .-..+.+...+|+.|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 223788999999999 9999999998664311 125667777777765
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.24 E-value=0.0045 Score=53.23 Aligned_cols=83 Identities=14% Similarity=-0.011 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 204 PGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
.-.+...++||..|-... .+..+++.+++..+..+| ...++++.+|..+++ .|+|++|..|.+.+|+.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 457888899998875322 245679999999999999 577899999999999 9999999999999999999998776
Q ss_pred HHHHHHH
Q 020109 281 ASYAKFL 287 (331)
Q Consensus 281 ~~lA~~L 287 (331)
.-...+-
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.20 E-value=0.0067 Score=60.69 Aligned_cols=116 Identities=16% Similarity=0.025 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~deAie 264 (331)
++.++|...|+++.+..-. |...+..+...+. ..|+.++|.++|++.....-. |...+..+-..+.+ .|+.++|.+
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~ 161 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHH
Confidence 4578999999999886322 4555566665554 579999999999999876422 56666777777788 999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 265 YFDQAVKSAP-DDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 265 yferALeldP-dna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+|+++++..- .+...|..+...+.+.|+.++|...++++.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 9999998753 488899999999999999999998887654
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.05 E-value=0.0013 Score=55.34 Aligned_cols=79 Identities=8% Similarity=-0.073 Sum_probs=65.1
Q ss_pred CCcccccHHHHHHhCCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSS---TDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ek---A~e~yekALeld-P-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
+.....|||-.+.+..+... ++..++..+..+ | ..-+.++.+|..+| ..|+|.+|.++++.+|+.+|+|..++.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34456789999988876654 999999988887 5 56778899998877 689999999999999999999998877
Q ss_pred HHHHH
Q 020109 247 LYADL 251 (331)
Q Consensus 247 ~lA~l 251 (331)
+...+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0069 Score=64.25 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh--------CCCC--------
Q 020109 180 NNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILA--------NPSD-------- 241 (331)
Q Consensus 180 A~~y~~~gd-~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~l--------dP~d-------- 241 (331)
-++....++ ++.|+.++++..+.+|.....+.... .++.....+.-+|.+...++++. .+.+
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 344444555 58899999999999997655433211 11111223456788888888742 2333
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+..-|.++.. +++++-|+++.++|+...|.+-..|+.++.+|..+|+++.|--.+-
T Consensus 335 ~~~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 335 CMSDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 2345555888888 9999999999999999999999999999999999999999986543
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.96 E-value=0.0044 Score=52.65 Aligned_cols=81 Identities=15% Similarity=-0.014 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 206 NALLLGNYARFLKEVR--GDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 206 npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.+...++||..+-... .+..+++.+++..+..+| ..-++++.+|..+++ .|+|++|..|.+++++..|+|..+..-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5778889997765332 245679999999999999 468899999999999 999999999999999999999987665
Q ss_pred HHHHH
Q 020109 283 YAKFL 287 (331)
Q Consensus 283 lA~~L 287 (331)
...+-
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.94 E-value=0.014 Score=58.44 Aligned_cols=128 Identities=6% Similarity=-0.018 Sum_probs=98.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC-CHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPS-DGNI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~---------GdyeeAee~~erAL~ldP~-d~~v 244 (331)
+.+.-..|.+.|+.++|...|+++.+..-. |...++.+-.++. .. ++.++|.++|++.....-. |..+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~-~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS-LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-TCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 445556777889999999999999987322 3444443333322 11 2478899999998876433 6677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
+..+...+.+ .|+.++|+++|+++.+.. ..+...|..+...|.+.|+.++|...++++..
T Consensus 108 yn~lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 108 FTNGARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888 999999999999999874 34888999999999999999999998886654
No 232
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.91 E-value=0.011 Score=55.67 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=59.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.+.++.+.|++.....|+.+|.|+.....|.++++ ..|++++|.+.++.+.+++|........|-.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 445689999999999999999999999999999987 78999999999999999999987765555433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.56 E-value=0.013 Score=50.27 Aligned_cols=78 Identities=5% Similarity=-0.126 Sum_probs=64.8
Q ss_pred CcccccHHHHHHhCCCc---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGS---SSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~---ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.....|||-++.+..+. .+++..++..+..+|. .-+.++.+|.-+| ..++|.+|.+|++.+|+.+|+|..+..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34567999999888754 5899999999999995 5667888888877 68999999999999999999999887655
Q ss_pred HHH
Q 020109 249 ADL 251 (331)
Q Consensus 249 A~l 251 (331)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.50 E-value=0.012 Score=49.98 Aligned_cols=76 Identities=5% Similarity=-0.117 Sum_probs=64.1
Q ss_pred ccccHHHHHHhCCCc---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGS---SSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~---ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...|||-.+.+-++. .+++..++..+..+|. .-+.++.+|.-+| ..|+|.+|.++++++|+.+|+|..+......
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 456899888887654 5899999999999995 4778888888877 5799999999999999999999998776554
Q ss_pred H
Q 020109 251 L 251 (331)
Q Consensus 251 l 251 (331)
+
T Consensus 121 I 121 (134)
T 3o48_A 121 V 121 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.49 E-value=0.21 Score=50.28 Aligned_cols=31 Identities=16% Similarity=0.014 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
.-+++..|..+|..+ ...++++.|+++|.++
T Consensus 677 ~~~~~~~W~~la~~a-l~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 677 DESAEMKWRALGDAS-LQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred hhCcHhHHHHHHHHH-HHcCCHHHHHHHHHHc
Confidence 334566666777664 3567777777777764
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.11 E-value=0.11 Score=52.53 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=37.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
....+..|..+|.+|+.++|++...+..+|.+... .++.-+|+-||-|++......+.+..++..++.+
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555 5555555555555555544455555555444443
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.25 E-value=0.91 Score=40.78 Aligned_cols=119 Identities=11% Similarity=0.143 Sum_probs=78.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHH-----------------hCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIE-----------------ANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALe-----------------ldP~npeal~~-yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
+.||.+.++|.+|+.++++.|. .||.+.+++.+ +|.++ .+.|+.++|+.+|.+....+|-.
T Consensus 69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhhhcCCcccc
Confidence 4588899999999999999993 36888887765 56665 47899999999999999999987
Q ss_pred HHHHHHHH-----------HHHHHHcCCHHHHHH---------------HHHHHHHhCCC-CHHHHHHHHHHHHHcCCch
Q 020109 242 GNILSLYA-----------DLIWQAHKDASRAES---------------YFDQAVKSAPD-DCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 242 ~~vL~~lA-----------~ll~~~~Gd~deAie---------------yferALeldPd-na~vl~~lA~~L~klG~~e 294 (331)
+.+-..+- .+.. .|+..--.+ +.++--+.-|. -.++...++.-|..+|-.+
T Consensus 148 ~~vEnliyeN~vp~~~d~~~i~~--~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d 225 (242)
T 3kae_A 148 SPVENLLLENKVPQKRDKENVRQ--TGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMND 225 (242)
T ss_dssp HHHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHhhcCCCcccchHHHHh--hhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccch
Confidence 77643221 1111 111111112 22233333442 2356778889999999888
Q ss_pred HHHhhhh
Q 020109 295 EEEQDNE 301 (331)
Q Consensus 295 Ea~~~~e 301 (331)
+...-.+
T Consensus 226 ~s~~lf~ 232 (242)
T 3kae_A 226 KSKACFE 232 (242)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7765443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.21 E-value=0.67 Score=46.51 Aligned_cols=108 Identities=17% Similarity=0.035 Sum_probs=62.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekAL--------eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.++|..+.+.++++.|+.+|.++- ....++.+.+..++... +..|++..|..+|.++ .+++ ..
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a-~~~~~~~~A~~~~~~~-----g~~~---~a 755 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA-ETTGKFNLAFNAYWIA-----GDIQ---GA 755 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHH-----TCHH---HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH-HHcCchHHHHHHHHHc-----CCHH---HH
Confidence 689999999999999999999851 12233444444444443 2345555554444332 1211 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdn---a~vl~~lA~~L~klG~~eEa~ 297 (331)
..++.+ .+++++|+.+.+ +..|.. ..+...++..+...|+++.|+
T Consensus 756 ~~~~~~-~~~~~~A~~lA~---~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 756 KDLLIK-SQRFSEAAFLGS---TYGLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HHHHHH-TTCHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HHHHHH-cCChHHHHHHHH---HhCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 223334 555555555433 245544 367778888888888765555
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.89 E-value=0.47 Score=45.63 Aligned_cols=85 Identities=8% Similarity=-0.001 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHH--------H--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNAL--------L--------------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npe--------a--------------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
.++.+.|...+++|+.+-.+.+. + +..++..+ ...|++.+|...+.+++..+|-+-.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~-l~~g~~~~a~~~l~~~~~~~P~~E~ 206 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAE-IACGRASAVIAELEALTFEHPYREP 206 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 46788899999999997443211 0 11122222 3568999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++..+-.+++. .|+..+|+..|+++.+.
T Consensus 207 ~~~~lm~al~~-~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 207 LWTQLITAYYL-SDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 99999999998 99999999999987664
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.46 Score=46.37 Aligned_cols=98 Identities=9% Similarity=-0.052 Sum_probs=72.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNI----L 245 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~v----L 245 (331)
...-+|.+|...|++++|.++|.++....... .+++.....+. ...+|+..|..++.+|...- ..++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~-l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLG-FFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678999999999999999999998875443 33444444443 35799999999999996542 233333 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
...|.+++. .++|.+|..+|-.++....
T Consensus 212 ~~~gl~~l~-~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLA-VRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGG-TSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-hChHHHHHHHHHHHhccCC
Confidence 344566666 8999999999999887754
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.35 E-value=0.28 Score=49.48 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=63.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
+-++|+...-+..++.|..||++|+.++|++...+..+|.+.. ..++.-+|..+|-|++....-.+.+..++..++-+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4556777777778899999999999999999999999998864 68999999999999987766666666666655543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.25 Score=52.39 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.+..-|.||- ..++|+-|+++.++|+...|.+...|+.||.+|.. +|||+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence 3444566653 68999999999999999999999999999999999 99999999766644
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.63 E-value=0.52 Score=44.29 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=56.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
..++.++|++.+...|+.+|.|+.....|..++.- .|++++|.+.++.+.+++|........|
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 47899999999999999999999999999999888 9999999999999999999776554333
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.35 E-value=1.9 Score=42.26 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=68.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH---
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLL----GNYARFLKEVRGDFAKAEELCGRAILAN---PSDGNIL--- 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP--~npeal----~~yA~lLy~~~GdyeeAee~~erAL~ld---P~d~~vL--- 245 (331)
.+|.+|...++|.+|...+.+.++.-. ++...+ ..-..+ |...+++.++..++.+|.+.. +.+|.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 689999999999999999999888522 223222 222344 346799999999999997554 2445432
Q ss_pred -HHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Q 020109 246 -SLYADLIW-QAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 246 -~~lA~ll~-~~~Gd~deAieyferALeld 273 (331)
..-|.++. . .++|.+|..+|-.+++..
T Consensus 183 ~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAAD-ERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHh-ccCHHHHHHHHHHHHhcc
Confidence 33456666 6 999999999999998654
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.15 E-value=2.7 Score=37.75 Aligned_cols=93 Identities=11% Similarity=-0.076 Sum_probs=56.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh---------------CCCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--LA---------------NPSD 241 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--~l---------------dP~d 241 (331)
|...+.-.|.|.+|.-++- +-+..-..+--+.+ +...+||.+|..+++..+ .+ ||.|
T Consensus 39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LC-y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLC-YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3444555566655554431 11222222222223 346788889988888888 22 3445
Q ss_pred HHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 242 GNI-LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 242 ~~v-L~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
-++ ...+|.++.+ .|+.+||+.+|.+.....|-.+.
T Consensus 113 kEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 113 EEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCccccch
Confidence 553 4567888888 89999999999888888884443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.57 E-value=1.3 Score=48.47 Aligned_cols=117 Identities=11% Similarity=-0.091 Sum_probs=83.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----------------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL---AN---------------- 238 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~---ld---------------- 238 (331)
.+...+...+.++-|.+ .+..-|.++...+.+|.++ ...|++++|.++|++|-. .+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~-L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIY-LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34445555666655543 4556788888888889885 478999999999998731 11
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCchHHHhhh
Q 020109 239 ----PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDCY----VLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 239 ----P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP-dna~----vl~~lA~~L~klG~~eEa~~~~ 300 (331)
..-+.++.....++.+ .+.++.++++...|++..+ ++.. .|.++=..+..+++|++|-..+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~-~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFE-ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1122344445555555 8999999999999999875 4432 6777888899999999997554
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.79 E-value=9.7 Score=33.31 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=37.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
..+.|+++.|.+..+.. ++...|..+|... ...|+++-|+++|.++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~A-L~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEA-LAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHH-HHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHH-HHcCChHHHHHHHHHh
Confidence 34568899998887654 6788999999885 4789999999999876
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.73 E-value=3.4 Score=40.52 Aligned_cols=94 Identities=10% Similarity=0.191 Sum_probs=69.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHH----
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDGN---- 243 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~~---- 243 (331)
.-+|..|+..|++.+|...+......--+ + .+++.....++ ...+|+.+|..++.++. ...+.++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~-l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS-ILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45899999999999999999987653111 1 33444445554 46799999999999973 34445543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++...|.++.. .++|.+|..+|..+++.
T Consensus 220 ~~~~~~~~~~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 44556777777 89999999999999875
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.39 E-value=0.93 Score=43.55 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++..++.++.. .|++++|+..+.+++..+|.+-.+|..+..+|+..|+..+|...++.
T Consensus 173 a~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 173 AHTAKAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556777777 99999999999999999999999999999999999999999876653
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.71 E-value=4.1 Score=45.00 Aligned_cols=95 Identities=7% Similarity=-0.153 Sum_probs=59.3
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALe-----ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA 249 (331)
..-+-+.|.+.|+.++|...|.++-+ ..|+ ...|+.+-.-++ ..|+.++|.++|++.....-. |...+..+-
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34455577777888888888866543 2443 444444444434 468888888888888764421 444444455
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhC
Q 020109 250 DLIWQAHKD-ASRAESYFDQAVKSA 273 (331)
Q Consensus 250 ~ll~~~~Gd-~deAieyferALeld 273 (331)
..+-+ .|+ .++|.++|+++.+..
T Consensus 208 ~glcK-~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGR-QDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHH-HTCCHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 55555 565 467778888888775
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.39 E-value=4.6 Score=44.07 Aligned_cols=117 Identities=9% Similarity=-0.088 Sum_probs=76.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-----------------------NPGNALLLGNYARFLKEVRGDFAKAE 228 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALel-----------------------dP~npeal~~yA~lLy~~~GdyeeAe 228 (331)
|+...+-+|++|...|++++|..+|++|-.. +...+.++.....+ ++..+.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L-Fe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH-HHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH-HHHcCCHHHHH
Confidence 4444677899999999999999999887321 11123445555555 45789999999
Q ss_pred HHHHHHHHhCC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 229 ELCGRAILANP-SDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 229 e~~erAL~ldP-~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
++...||+..+ ++.. .+..+-..... .++|++|...+.+.=. .......+..+...+...+
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCC
Confidence 99999998775 4443 33444555666 8999999777754422 2233444555544444433
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.76 E-value=7.3 Score=38.04 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAILANP--SDG----NILSLYADLIWQAHKDASRAESYFDQAVKSA---PDDCY---- 278 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~----~vL~~lA~ll~~~~Gd~deAieyferALeld---Pdna~---- 278 (331)
.+|.+++ ..|+|.+|.+++.+++..-. +|. +++..-..++.. .+++.++..+|.+|.+.. +.++.
T Consensus 104 kL~~l~~-~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYF-DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 6788865 68999999999999886422 122 233444566777 999999999999998774 23443
Q ss_pred HHHHHHHHHH-HcCCchHHHhhh
Q 020109 279 VLASYAKFLW-DAGEDEEEEQDN 300 (331)
Q Consensus 279 vl~~lA~~L~-klG~~eEa~~~~ 300 (331)
+...-|.+++ ..++|.+|...+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHH
Confidence 4455688888 899999998544
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.74 E-value=22 Score=39.34 Aligned_cols=95 Identities=8% Similarity=-0.100 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCYVLASY 283 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld-Pdna~vl~~l 283 (331)
.++.+-..++ ..|+.++|.++|++.... -.-|...+..+-..+.+ .|+.++|.++|+++.+.. .-|...|..+
T Consensus 129 TynaLIdglc-K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCL-LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3444555554 579999999999765421 23366677778888888 999999999999999875 2588899999
Q ss_pred HHHHHHcCCc-hHHHhhhhhccc
Q 020109 284 AKFLWDAGED-EEEEQDNEEGQH 305 (331)
Q Consensus 284 A~~L~klG~~-eEa~~~~e~~~~ 305 (331)
-.++.+.|+. ++|...+++|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999986 566555555543
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.28 E-value=6.1 Score=34.61 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.|+...+.+| ...|+++.|.++.+.+ ++...|..+|..... .|+++-|+..|.++
T Consensus 6 ~D~~~rF~LA----L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA----LEYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH----HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred CChHHHHHHH----HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence 4667777776 3579999999998765 689999999999999 99999999888753
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.18 E-value=16 Score=37.53 Aligned_cols=118 Identities=8% Similarity=0.042 Sum_probs=77.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-H-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKE-V-RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA-~lLy~-~-~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.+.+.+.|...|.+.-....-++.....+. .+... . .+...++...+.++.... .+..+..-++...++ .+|++.
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr-~~d~~~ 303 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALG-TGDRRG 303 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHH-HTCHHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHH-CCCHHH
Confidence 334667777777766554443433332222 22111 1 122567788888876644 444444445555566 799999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
|..+|.++-..........|-+|+.+..+|+.++|...+++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999988766555678889999999999999999987776543
No 256
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=78.40 E-value=25 Score=30.37 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAiey 265 (331)
++...-+.||-+ ...+.++. .+| .++. .+|..++-++.+...+..++-+|.++..+|.+|.+ .|+..+|.++
T Consensus 75 ~NlKrVi~C~~~----~n~~se~v-d~ALd~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eL 147 (172)
T 1wy6_A 75 QNLKSVVECGVI----NNTLNEHV-NKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTL 147 (172)
T ss_dssp SCTHHHHHHHHH----TTCCCHHH-HHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred hcHHHHHHHHHH----hcchHHHH-HHHHHHHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHH
Confidence 456778888754 33444443 334 3333 57999999999998888888889999999999999 9999999999
Q ss_pred HHHHHHhC
Q 020109 266 FDQAVKSA 273 (331)
Q Consensus 266 ferALeld 273 (331)
+.+|-+..
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99998764
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.78 E-value=2.4 Score=43.22 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 218 KEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d-------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn 276 (331)
|...+.|+.|+.+..++. .|.. ..+++++|.++.- +++|.+|.+++.+|+...|.+
T Consensus 241 YL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 241 FLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCS
T ss_pred HHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence 456789999999999995 4432 4566777999888 999999999999999988754
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.12 E-value=3.1 Score=40.42 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHH
Q 020109 190 SSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 190 ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
++-.+....+.+.+-+. ..++..+|.+++ ..||+++|.++|.++...... -.+++.....+.+. .+++..|.
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~-~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~ 188 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYA-QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVK 188 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHH-HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 33334444444433332 346678999976 689999999999999876544 33455555666677 89999999
Q ss_pred HHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCchHHHhhh
Q 020109 264 SYFDQAVKSAP--DDC----YVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 264 eyferALeldP--dna----~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.++.+|..+.. .+. .+....|.+++..++|.+|...+
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f 231 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLL 231 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999977632 222 23445677888888998887544
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.74 E-value=5.4 Score=40.63 Aligned_cols=121 Identities=9% Similarity=-0.050 Sum_probs=48.3
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHHcCCHHHHH--------------HHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIE-----------ANPGNALLLGNYARFLKEVRGDFAKAE--------------ELC 231 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALe-----------ldP~npeal~~yA~lLy~~~GdyeeAe--------------e~~ 231 (331)
...-.++...+++++|..+-.+.+. +|+=++.+|+-|+.+ ++..++..... ..+
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~-~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLS-HETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH-HHHhcccccccccccchhhHHHHHHHHH
Confidence 3344566677889999988876652 134445556655555 34455443321 122
Q ss_pred HHHH-HhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 232 GRAI-LANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 232 erAL-~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn-------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.|. ..|+. .+.++..+-..|.. .+.++.|..+..++. .|.+ +..+|.+|+++.-.++|.+|+.-++
T Consensus 219 rta~lr~D~~~qa~l~nllLRnYL~-~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 219 KIASLKHDNETKAMLINLILRDFLN-NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHCCSCSSSCHHHHHHHHHHHHHHH-SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcccCcchhHHHHHHHHHHHHc-cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2222 22222 23455566677777 899999999999995 4533 4556778999999999999987766
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.76 E-value=44 Score=29.79 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHhC------CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 194 AYYEKMIEAN------PGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 194 e~yekALeld------P~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
..+++++... -+|+. +|..||.++ ...+..++.++|.-+.... -..+.++..+|..+.. .|++++|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A 134 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEA 134 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHH
Confidence 4667777642 23444 445556553 1455778888888887554 4677788888998888 9999999
Q ss_pred HHHHHHHHHhCCCCH
Q 020109 263 ESYFDQAVKSAPDDC 277 (331)
Q Consensus 263 ieyferALeldPdna 277 (331)
.+.|+.+++....-.
T Consensus 135 ~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 135 KVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHcCCccH
Confidence 999999999986443
No 261
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=67.61 E-value=12 Score=34.15 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 190 ekA~e~yekALe-----ldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
++|..+|++|+. +.|.+|..+ .+++.|+|+..++.++|.++.++|+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555543 244455433 2444555555555555544444443
No 262
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.27 E-value=14 Score=34.34 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL 235 (331)
+|+.|+|+..++.++|.++.++|+
T Consensus 202 NfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 202 NFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444443
No 263
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=64.70 E-value=16 Score=33.49 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 190 ekA~e~yekALe-----ldP~npeal---~~yA~lLy~~~GdyeeAee~~erA 234 (331)
+.|...|++|+. +.|.+|..+ .|++.|+|+..++.++|.++.++|
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~A 202 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTT 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555543 355555543 244555555556655555544444
No 264
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=64.38 E-value=15 Score=34.14 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 190 ekA~e~yekALe-----ldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
++|..+|++|+. +.|.+|..+ .+|+.|+|+..++.++|.++.++|+
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345555555553 345555433 2445555555555555555555543
No 265
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=63.36 E-value=17 Score=33.46 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 190 ekA~e~yekALe-----ldP~npeal---~~yA~lLy~~~GdyeeAee~~erA 234 (331)
+.|...|++|+. +.|.+|..+ .+++.|+|+..++.++|.++.++|
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~A 200 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTA 200 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444433 244444433 234444454445555544444443
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.32 E-value=46 Score=35.71 Aligned_cols=94 Identities=11% Similarity=-0.108 Sum_probs=60.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC------------------
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANP------------------ 239 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~-ldP------------------ 239 (331)
+...+...+.++-|. ..+..-|.++..-+.+|.++ ...|++++|.++|++|-. +..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~-L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIY-LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHH-HHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 445555666665443 34566778888778888885 478999999999987741 111
Q ss_pred --CCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 020109 240 --SDG--NILSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCY 278 (331)
Q Consensus 240 --~d~--~vL~~lA~ll~~~~Gd~deAieyferALeld-Pdna~ 278 (331)
+.. .++...+.++.+ .+-++-++++.+.||+.. +++..
T Consensus 891 e~~~~~~~YY~hV~~LFE~-~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFE-ESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcccCCcc
Confidence 111 133344454455 788888888888888754 45554
No 267
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=61.80 E-value=19 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=16.6
Q ss_pred HhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 236 LANPSDGNILS---LYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 236 ~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferAL 270 (331)
.+.|.+|..|. +++.+++...++.++|+.+.++|+
T Consensus 189 ~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 189 ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555554322 334444444455555555544443
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.40 E-value=28 Score=35.72 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
..++...+.+++.... +....-.++.... ..+|+..|..+|++.-......+...+=+|..+.. .|+.++|..+|.+
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQ-STSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHTCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCC-ChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 5677777777665443 3333333443322 46999999999987755444567777777888777 8999999999998
Q ss_pred HHH
Q 020109 269 AVK 271 (331)
Q Consensus 269 ALe 271 (331)
+.+
T Consensus 345 ~a~ 347 (618)
T 1qsa_A 345 LMQ 347 (618)
T ss_dssp HHT
T ss_pred Hhc
Confidence 875
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=61.21 E-value=14 Score=28.13 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAILA 237 (331)
Q Consensus 225 eeAee~~erAL~l 237 (331)
++|.+++.+|++.
T Consensus 17 ~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 17 EMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 270
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.39 E-value=15 Score=27.85 Aligned_cols=12 Identities=25% Similarity=0.063 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHh
Q 020109 226 KAEELCGRAILA 237 (331)
Q Consensus 226 eAee~~erAL~l 237 (331)
+|.+++.+|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 271
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=59.47 E-value=59 Score=29.50 Aligned_cols=64 Identities=6% Similarity=0.033 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 020109 221 RGDFAKAEELCGRAIL-----ANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYA 284 (331)
Q Consensus 221 ~GdyeeAee~~erAL~-----ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALel------dPdna~vl~~lA 284 (331)
.|+.++|.+.|+.|.. +.|.+|. ...+++.+++...++.++|..+.++|+.. ..++.+-.....
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~~ 215 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQIT 215 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3567788899998875 3455543 45567888888789999999999999764 345555444433
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.26 E-value=53 Score=29.30 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHHH--cCCH-HH--HH-HHHHHHHHhCC------CCHHH---HHHH
Q 020109 188 GSSSTDAYYEKMIEA---NPGNAL-LLGNYARFLKEV--RGDF-AK--AE-ELCGRAILANP------SDGNI---LSLY 248 (331)
Q Consensus 188 d~ekA~e~yekALel---dP~npe-al~~yA~lLy~~--~Gdy-ee--Ae-e~~erAL~ldP------~d~~v---L~~l 248 (331)
+.......|++.|.. +-+||. .|..|-.-.-+. .|.. .+ =. .++++++...- +|+.+ |..|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 345677788888887 556776 344444321111 1222 11 12 57788776333 34443 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
|..+. .....++.++|..+....- .-+..|..+|.++...|++++|+.+++.|-.
T Consensus 87 a~~~~--~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 87 INLFL--SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhc--ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44331 2446789999998888864 7788999999999999999999987765443
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.18 E-value=1.1e+02 Score=29.47 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH---
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILA--NPSD----GNILSLYADLIWQAHKDASRAESYFDQAVK---SAPDDC--- 277 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~l--dP~d----~~vL~~lA~ll~~~~Gd~deAieyferALe---ldPdna--- 277 (331)
...||.++ +..|++.+|..++.....- ...+ .+++..-..+++. .+|+.+|..++.++.. ..+..+
T Consensus 140 ~~~La~i~-e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 140 TKDLVEIK-KEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHH-HHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 35678885 4789999999999887532 1122 2345555677777 8999999999999743 234444
Q ss_pred -HHHHHHHHHHHHcCCchHHHhhh
Q 020109 278 -YVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 278 -~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
..+...+.++...++|.+|...+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34556688888888888877433
No 274
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=58.27 E-value=46 Score=30.78 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHH----hCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAIL----ANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL~----ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|+.|+. +.|.+|..|- +++.+++...++.++|+.+.++|+..
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457888888885 5777887543 56777787689999999988888764
No 275
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.18 E-value=34 Score=29.56 Aligned_cols=57 Identities=18% Similarity=0.056 Sum_probs=46.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
..+..+++-++-.+.+...+..++-+|+++..+|..+ ...|+..+|.+++.+|.+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay-~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANAL-RRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHH-HHhcchhhHHHHHHHHHHhh
Confidence 4667778888888888887777777899999999996 57899999999999998764
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=57.87 E-value=29 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
++|+.+..+|++.|.. .+|...+ .-|.+|+++|.++++..|+... .. .++ .+..+|++||
T Consensus 9 ~~Ai~lv~~Ave~D~~-----g~y~eAl----~lY~~aie~l~~~lk~e~d~~~-k~-----~ir-----~K~~eY~~RA 68 (83)
T 2v6y_A 9 DMARKYAILAVKADKE-----GKVEDAI----TYYKKAIEVLSQIIVLYPESVA-RT-----AYE-----QMINEYKKRI 68 (83)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHH----HHHHHHHHHHHHHHHHCTTCTT-HH-----HHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----ccHHHHH----HHHHHHHHHHHHHHHHCCCHHH-HH-----HHH-----HHHHHHHHHH
Confidence 5788888888776442 1111111 1134566666666666654431 11 122 3455666666
Q ss_pred HHhC
Q 020109 270 VKSA 273 (331)
Q Consensus 270 Leld 273 (331)
-++.
T Consensus 69 E~Lk 72 (83)
T 2v6y_A 69 SYLE 72 (83)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
No 277
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=57.04 E-value=49 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH-----HhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAI-----LANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL-----~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|+.|+ .+.|.+|..|- +++.+++...++.++|+.+.++|+.-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45788888887 46888987544 56777887689999999888877744
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.81 E-value=27 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
.++|+.+..+|++.|... +|...+ .-|.+|+++|.++++..|+.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g-----~y~eAl----~lY~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEG-----NAEEAI----TNYKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CHHHHH----HHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHhc-----cHHHHH----HHHHHHHHHHHHHHHHCCCH
Confidence 367888888887764431 111111 11345666666666666543
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.81 E-value=1.1e+02 Score=29.20 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH---------HhCCCCHHH-HHHHHHHHHHcCCchHHHhhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQ-------AV---------KSAPDDCYV-LASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyfer-------AL---------eldPdna~v-l~~lA~~L~klG~~eEa~~~~ 300 (331)
.||+.+..+|..+|+ .+++.+|+.+|-. .+ +..|...+. .......|..+++...|....
T Consensus 134 Gdp~LH~~ig~~~~~-e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 134 GDPELHHVVGTLYVE-EGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp CCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-cCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999 9999999888731 11 112333333 334455667778888887543
No 280
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=54.84 E-value=49 Score=30.04 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 187 gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ 236 (331)
|+.+.|..+|+.|+.+ .|.+|. ...|++.|+|+..++.++|.++.++|+.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3468999999999874 555553 4568899999999999999999999976
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.40 E-value=44 Score=31.48 Aligned_cols=65 Identities=8% Similarity=-0.043 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------H---hCCCCHHHH-HHHHHHHHHcCCchHHHhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAV----------------K---SAPDDCYVL-ASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferAL----------------e---ldPdna~vl-~~lA~~L~klG~~eEa~~~ 299 (331)
.||..+..+|..+|. .+++.+|+.+|-..- + -.|...+.+ ......|..+++...|...
T Consensus 132 Gdp~LH~~~a~~~~~-e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLE-GDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp CCHHHHHHHHHHHHH-TTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCHHHHHHHHHHHhh-cCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 489999999999999 999999999885221 2 123333333 3334566778888888866
Q ss_pred hhhccc
Q 020109 300 NEEGQH 305 (331)
Q Consensus 300 ~e~~~~ 305 (331)
.++-..
T Consensus 211 ~~~f~~ 216 (312)
T 2wpv_A 211 KDIFLE 216 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.11 E-value=77 Score=26.87 Aligned_cols=50 Identities=4% Similarity=0.062 Sum_probs=36.6
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 227 AEELCGRAIL--ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 227 Aee~~erAL~--ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+.++|.-+.. +.-..+.++..+|..+.. .|++++|.+.|+.+++....-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCccH
Confidence 6666666654 444567777778888887 8888888888888888876444
No 283
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=52.56 E-value=18 Score=33.67 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 224 FAKAEELCGRAILANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 224 yeeAee~~erAL~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
|++|.+...+-+++.|.+|..|- +++.+++...++.++|+.+.++|+..
T Consensus 175 Yq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 175 YEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555554443333666665433 34555665467777777776666655
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.24 E-value=86 Score=28.28 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 225 AKAEELCGRAILA--NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 225 eeAee~~erAL~l--dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+.+..+|.-+... .-..+.++..+|.++.. .|++.+|.+.|..+++....-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFES-RGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCccH
Confidence 3566677766654 44677888889999898 9999999999999999986433
No 285
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=52.08 E-value=31 Score=30.16 Aligned_cols=83 Identities=11% Similarity=-0.088 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD-----LIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~-----ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
+++-+|.+. ..+++|.+|.+++..|+...|.+..-...... +-+. +|++..- ..+++ .+.. .+..+
T Consensus 16 Y~YYlGr~~-~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll-~G~iP~~-~ll~~----~~~~--~y~~L 86 (203)
T 3t5x_A 16 YKYYVGRKA-MFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML-LGHMPTV-ELLKK----YHLM--QFAEV 86 (203)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH-TTCEECH-HHHHH----TTCG--GGHHH
T ss_pred HHHHHHHHH-HHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH-cCCCCCH-HHhhh----Cchh--HHHHH
Confidence 455567774 47899999999999999998876543322222 2233 5665432 22322 2221 34455
Q ss_pred HHHHHHcCCchHHHhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e 301 (331)
..+ .+.|+...-+..++
T Consensus 87 ~~A-vr~Gdl~~f~~~l~ 103 (203)
T 3t5x_A 87 TRA-VSEGNLLLLHEALA 103 (203)
T ss_dssp HHH-HHHTCHHHHHHHHH
T ss_pred HHH-HHhCCHHHHHHHHH
Confidence 543 45677766665554
No 286
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.65 E-value=93 Score=25.04 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v 244 (331)
.++|+.++.+|++.|-. .+|...+ .-|.+|+++|..+++..+.++..
T Consensus 15 l~kAi~lv~~Ave~D~a-----g~y~eAl----~lY~~Aie~l~~alk~e~~~~~~ 61 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKA-----GNYEEAL----QLYQHAVQYFLHVVKYEAQGDKA 61 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-----TCHHHHH----HHHHHHHHHHHHHHHTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHc-----cCHHHHH----HHHHHHHHHHHHHHHhccCCHHH
Confidence 46888888888755321 1122111 11445666666666666566543
No 287
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=51.49 E-value=23 Score=27.17 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=8.2
Q ss_pred HcCCHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAI 235 (331)
Q Consensus 220 ~~GdyeeAee~~erAL 235 (331)
..|+|++|..+|..||
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555555544
No 288
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.37 E-value=35 Score=32.67 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=47.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---------------CCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q 020109 218 KEVRGDFAKAEELCGRAILAN---------------PSD--GNILSLYADLIWQAHKDASRAESYFDQAVKS-------A 273 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ld---------------P~d--~~vL~~lA~ll~~~~Gd~deAieyferALel-------d 273 (331)
.....+.++|.+++++....- -.. ..+....+..++. .++.++|..+++++-.. +
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~-~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLL-KNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhhccCCcc
Confidence 345678888888888663211 012 3345566777777 89999999999888654 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCchHH
Q 020109 274 PD-DCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 274 Pd-na~vl~~lA~~L~klG~~eEa 296 (331)
|. ...++...+..+...+++.++
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 21 123334445555555665544
No 289
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.19 E-value=26 Score=27.14 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ 236 (331)
-.++|+.++.+|++. ...++|++|..+|..|+.
T Consensus 11 ~l~~Ai~lv~~Ave~----------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL----------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------HHhCCHHHHHHHHHHHHH
Confidence 346777776666322 456888888777777764
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.71 E-value=1.8e+02 Score=27.61 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=75.2
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHH-------HH---------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEK-------MI---------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yek-------AL---------eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
-+.++.-+|..|.+.+++.+|..+|-. .+ +..|.....+..-|.+.|...++...|...++.-+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467788888888888888888777620 11 11344556666667676777899999877655544
Q ss_pred H----hCC------------------CCHHHHHHHHHHH---HHHcCC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 020109 236 L----ANP------------------SDGNILSLYADLI---WQAHKD---ASRAESYFDQAVKSAP-DDCYVLASYAKF 286 (331)
Q Consensus 236 ~----ldP------------------~d~~vL~~lA~ll---~~~~Gd---~deAieyferALeldP-dna~vl~~lA~~ 286 (331)
+ .+| ..|.. ++.+++ .+ .+. |..-.+.|...++.+| .-...+..+|..
T Consensus 215 ~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NFl~lLllt~q-~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~ 291 (336)
T 3lpz_A 215 SALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NFISMLLLSVQ-KGSPDLFRQLKSKYEANLNELNGIWDTALELIAEM 291 (336)
T ss_dssp HHHHHHCTTSCCEESCC--CCCEECTTCHHH--HHHHHHHHHHH-SCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHH
T ss_pred HHHhhcCCCccccccccCCcccccCCCCchH--HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3 333 34432 222222 22 343 4445567778888888 778888899999
Q ss_pred HHHcC
Q 020109 287 LWDAG 291 (331)
Q Consensus 287 L~klG 291 (331)
|...-
T Consensus 292 YFgi~ 296 (336)
T 3lpz_A 292 YFGIQ 296 (336)
T ss_dssp HHCCC
T ss_pred HcCCC
Confidence 98774
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.63 E-value=74 Score=27.28 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 227 AEELCGRAIL--ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 227 Aee~~erAL~--ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+.++|.-+.. +.-..+.++..+|.++.. .|++.+|.+.|..+++....-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcH
Confidence 6666776664 445678888889999888 9999999999999999986333
No 292
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=48.31 E-value=48 Score=34.09 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
.+...|...+. .|+|.-|.++++.++..+|+|..+...++.+|.++|...
T Consensus 451 ~~~~~a~~~~~-~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 451 RLLEQARASYA-RGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34445677777 899999999999999999999999999999999887543
No 293
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=53.64 E-value=3.8 Score=37.02 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.8
Q ss_pred hhhhhh
Q 020109 105 RIQRLF 110 (331)
Q Consensus 105 ~~~~~~ 110 (331)
|++..+
T Consensus 129 Ri~~~~ 134 (215)
T 2l6f_A 129 RLKMIS 134 (215)
Confidence 444444
No 294
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.81 E-value=43 Score=25.17 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 213 YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 213 yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
+|..+. .+|++++|..+|-+||...|+=...+..|
T Consensus 23 ~GE~L~-~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 23 LGEELL-AQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 454432 45666677777777777666655554433
No 295
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=42.64 E-value=57 Score=29.57 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=36.7
Q ss_pred HHHHHHHHHHH-----HhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAI-----LANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL-----~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|+.|+ .+.|.+|..|. +++.+++...++.++|+.+.++|+.-
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~ 202 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888886 46888987544 56777777689999999988887763
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.05 E-value=42 Score=33.15 Aligned_cols=64 Identities=5% Similarity=-0.028 Sum_probs=45.2
Q ss_pred CCcccccHHHHHHhCCCc--HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGS--SSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~--ekA~e~yekALel-----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ 236 (331)
=++.++|+|.+-....-. ..++..|.+||.. +.....-+.-+|.++| ..+++.+|.++|-.|-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~y-R~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYY-RKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhh-hcchHHHHHHHHHHHHH
Confidence 345678888887766433 4488999999885 3334444555677767 57999999999988853
No 297
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.27 E-value=53 Score=32.55 Aligned_cols=67 Identities=7% Similarity=-0.078 Sum_probs=50.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCC--------CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANP--------GN--ALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSD 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP--------~n--peal~~yA~lLy~~~GdyeeAee~~erAL~l-dP~d 241 (331)
.+..++-+.|++.++...+...+...-...+ .. ..+++-+|.+. ..+.+|.+|.+++..|+.. .|.+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~-~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYY-LLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHH-HHHccHHHHHHHHHHHHHhcCCcc
Confidence 4567788999999999999999865433322 11 23455567775 4789999999999999998 7765
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.09 E-value=2e+02 Score=27.40 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC----CC-HHHHHHHHHHHHHHcCCHHHHHH--HHHHHHH---------------
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP----GN-ALLLGNYARFLKEVRGDFAKAEE--LCGRAIL--------------- 236 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP----~n-peal~~yA~lLy~~~GdyeeAee--~~erAL~--------------- 236 (331)
-|.-+.+.|++++|+..|+.+|..=| ++ .+. ...-.++ ....+|--|.. .-++.+.
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~-~e~~eli-~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDE-KLAHKIL-ETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHH-HHHHHHH-HHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 45566888999999999999998632 21 111 1111111 11222333222 1122211
Q ss_pred ---hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 237 ---ANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 237 ---ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+.|. -..++...-...|+ .++|..|..+..|.|++.|...
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K-~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFK-HKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSSH
T ss_pred cCCCcHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCHH
Confidence 1111 11233333455677 9999999999999999999543
No 299
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=39.64 E-value=69 Score=29.16 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=36.4
Q ss_pred HHHHHHHHHHH-----HhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAI-----LANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL-----~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|+.|+ .+.|.+|..|. +++.+++...++.++|+.+.++|+..
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55788888876 47788987644 56778887689999999888777653
No 300
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.09 E-value=1.2e+02 Score=25.84 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=38.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC------HHHHHH-H--HHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 220 VRGDFAKAEELCGRAILANPSD------GNILSL-Y--ADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d------~~vL~~-l--A~ll~~~~Gd~deAieyferALel 272 (331)
..|+|-+|-+.++.+-...+.. ...+.. + |...++ .|+..-|..++.+|+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~-rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFD-FEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 4699999999999998877655 222223 3 333455 79999999999999884
No 301
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=37.64 E-value=76 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH-----HhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAI-----LANPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 225 eeAee~~erAL-----~ldP~d~~vL~---~lA~ll~~~~Gd~deAieyferALel 272 (331)
++|.+.|+.|+ .+.|.+|..|- +++.+++...++.++|+.+.++|+..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55788888875 47788987644 56777888689999999887777653
No 302
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.64 E-value=60 Score=33.39 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=35.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
..|+|.-|.++.+.++..+|+|..+...+|.++.+ .+...
T Consensus 461 ~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~-l~~~~ 500 (658)
T 2cfu_A 461 ARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQ-LGYQA 500 (658)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHC
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHhc
Confidence 46999999999999999999999999999999877 55433
No 303
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.34 E-value=79 Score=23.68 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
.+|..+.. .|++++|..+|-+|+..-|.-...+..|
T Consensus 22 ~~GE~L~~-~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 22 QLGEELLA-QGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45888888 9999999999999999999777665544
No 304
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=37.17 E-value=12 Score=30.14 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.1
Q ss_pred CCccccccee
Q 020109 124 DDDEKEGCEV 133 (331)
Q Consensus 124 ~~~~~~~~~~ 133 (331)
+|.+.=-|.+
T Consensus 88 ~DsG~Y~C~~ 97 (135)
T 1p4b_L 88 EDEAIYFCAL 97 (135)
T ss_dssp GGCEEEEEEE
T ss_pred hHCEEEEEEE
Confidence 4445555555
No 305
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=36.88 E-value=85 Score=25.28 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAILA 237 (331)
Q Consensus 225 eeAee~~erAL~l 237 (331)
++|..++.+|++.
T Consensus 16 ~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 16 QKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666643
No 306
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.53 E-value=24 Score=28.94 Aligned_cols=46 Identities=7% Similarity=0.019 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
...|.+|.+|+.+||++|-. +.--.. ..-|.+++..|+++|.+..+
T Consensus 16 k~~h~~AF~~Is~AL~~DE~--------g~k~~A-l~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 16 REAYKKAFLFVNKGLNTDEL--------GQKEEA-KNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCHHHH-HHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhc--------CCHHHH-HHHHHHHHHHHHHhcccccc
Confidence 34577888888888887752 111111 33345677777777777663
No 307
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=36.43 E-value=1e+02 Score=23.61 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 020109 259 ASRAESYFDQAVKSAPD 275 (331)
Q Consensus 259 ~deAieyferALeldPd 275 (331)
|.+|+++|.++++..|+
T Consensus 38 Y~~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 38 YQEGIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 34566666666665553
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.04 E-value=65 Score=27.34 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 190 SSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 190 ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
+.+...|..+....= ..+.++-.+|.++ +..|++.+|.+.|++.|+.+-.=..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHL-EAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCccHH
Confidence 346666666665543 3567777888886 5789999999999999997655443
No 309
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.96 E-value=79 Score=27.51 Aligned_cols=78 Identities=9% Similarity=-0.044 Sum_probs=47.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN----YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~----yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.+=+|+++..+++|.+|.+++..|+..-|.+...... |-.......|+... ...+++ .+.. .+..+..+
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~~--~y~~L~~A 89 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHLM--QFAEVTRA 89 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTCG--GGHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cchh--HHHHHHHH
Confidence 4557899999999999999999999998876433222 22222345677653 233332 2222 24455554
Q ss_pred HHHHcCCHHHH
Q 020109 252 IWQAHKDASRA 262 (331)
Q Consensus 252 l~~~~Gd~deA 262 (331)
+. .||...-
T Consensus 90 vr--~Gdl~~f 98 (203)
T 3t5x_A 90 VS--EGNLLLL 98 (203)
T ss_dssp HH--HTCHHHH
T ss_pred HH--hCCHHHH
Confidence 43 5776543
No 310
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=35.68 E-value=55 Score=32.73 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=51.1
Q ss_pred CcccccHHHHHHhCCCc--HHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCC
Q 020109 173 SGFSGSNNNYSNNNHGS--SSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL------ANP 239 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~--ekA~e~yekALel-----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~------ldP 239 (331)
++.++|+|.+-...... ..+++.|++||.. +...-.-+..+|.++| ..++|.+|.++|..|-. .+-
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~-R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC-RNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHH-HhhhHHHHHHHhhhhhhhhhhccccc
Confidence 44578899888776433 4588999999984 3333444444577777 57999999999998853 233
Q ss_pred CCHHHHHHHH
Q 020109 240 SDGNILSLYA 249 (331)
Q Consensus 240 ~d~~vL~~lA 249 (331)
+|-+.+..+-
T Consensus 341 eDeEiYke~~ 350 (489)
T 4gq4_A 341 EDEEIYKEFF 350 (489)
T ss_dssp TCHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4555554443
No 311
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.32 E-value=58 Score=24.80 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
..|+.+..+|++.|-.. +|...+ .-|.+|+++|-.++...|+.
T Consensus 14 ~~A~~lv~~Ave~D~~g-----~y~eAl----~lY~~Aie~ll~alk~e~d~ 56 (86)
T 4a5x_A 14 TAAATVLKRAVELDSES-----RYPQAL----VCYQEGIDLLLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHHHHHHHHHHTT-----CHHHHH----HHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHcC-----CHHHHH----HHHHHHHHHHHHHHhhCCCH
Confidence 46677777777764331 122111 11446777777777766543
No 312
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.05 E-value=1.9e+02 Score=27.00 Aligned_cols=65 Identities=6% Similarity=-0.107 Sum_probs=45.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHH----------------H---hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMI----------------E---ANPGNALLLGNYARFLKEVRGDFAKAEELCG 232 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekAL----------------e---ldP~npeal~~yA~lLy~~~GdyeeAee~~e 232 (331)
-+.++.-+|..|.+.+++.+|..+|-..- + -+|.....+..-|.+.|...++...|...|+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 56788899999999999999999874211 1 1233444555556566666788888888877
Q ss_pred HHHH
Q 020109 233 RAIL 236 (331)
Q Consensus 233 rAL~ 236 (331)
.-++
T Consensus 213 ~f~~ 216 (312)
T 2wpv_A 213 IFLE 216 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 313
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.83 E-value=85 Score=31.06 Aligned_cols=87 Identities=7% Similarity=-0.052 Sum_probs=59.7
Q ss_pred CcHHHHHHHHHHHHhCCC-------C-----HHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CC
Q 020109 188 GSSSTDAYYEKMIEANPG-------N-----ALL----LGNYARFLKEVRGDFAKAEELCGRAILANP----------SD 241 (331)
Q Consensus 188 d~ekA~e~yekALeldP~-------n-----pea----l~~yA~lLy~~~GdyeeAee~~erAL~ldP----------~d 241 (331)
..++|...+.++...--+ . ... .+.+-.++ ...++..-+...++..-...+ .-
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiY-Fkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIY-FRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHH-HHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHH-HHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 457888888888886111 1 111 12233443 367888888888865544332 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKS-APDD 276 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALel-dPdn 276 (331)
..+++.+|.+++. .++|.+|.+++.+|++. -|.+
T Consensus 220 v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCcc
Confidence 4577888999988 99999999999999999 7755
No 314
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.07 E-value=92 Score=28.80 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=12.9
Q ss_pred HhCCCCHH---HHHHHHHHHHHc-CCchHHH
Q 020109 271 KSAPDDCY---VLASYAKFLWDA-GEDEEEE 297 (331)
Q Consensus 271 eldPdna~---vl~~lA~~L~kl-G~~eEa~ 297 (331)
++.|.++- +..+++.||+.. ++.++|.
T Consensus 189 ~L~pThPirLGLaLNfSVFyYEIln~p~~Ac 219 (261)
T 3ubw_A 189 ELPPTHPIRLGLALNFSVFYYEILNSPDRAC 219 (261)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45555552 334555555553 4444443
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.53 E-value=1e+02 Score=26.33 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 191 STDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 191 kA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
.+...|..+....= ..+.++-.+|.++ +..|++.+|.+.|+++|+....=..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~l-E~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEY-EARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 45566666555543 3577777888886 5789999999999999998754433
No 316
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=33.01 E-value=1.3e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYA 214 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA 214 (331)
++.|+.|..+.-..--++|+.+...-
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL 35 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFL 35 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHH
Confidence 34555555555554444555444333
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.57 E-value=85 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 190 SSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 190 ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
+.+...|..+....=+ .+.+|-.+|.++ +..|++.+|.+.|++.|+..-.=
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYF-ESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666677766665443 577778888886 58899999999999999987553
No 318
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.44 E-value=78 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 020109 221 RGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d 241 (331)
.|+++.|..+|-+||...|+=
T Consensus 33 ~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 33 QGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HTCHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHHcCCH
Confidence 455555555555555555443
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.07 E-value=67 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.036 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 020109 247 LYADLIWQAHKDASRAES 264 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAie 264 (331)
..|..+.. .|+|++||+
T Consensus 20 RrAe~ll~-~gkydeAIe 36 (97)
T 2crb_A 20 RRADRLLA-AGKYEEAIS 36 (97)
T ss_dssp HHHHHHHH-TTCHHHHHH
T ss_pred hHHHHHHh-cCCHHHHHH
Confidence 34444444 555555543
No 320
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.88 E-value=68 Score=32.21 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=44.1
Q ss_pred CCcccccHHHHHHhCCC--cHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHG--SSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd--~ekA~e~yekALel-----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ 236 (331)
=++.++|+|.+-....- ...++..|.+||.. +.....-+..+|.++| ..+++.+|..+|-.|-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y-R~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC-RNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhh-hcchHHHHHHHHHHHHH
Confidence 34557788887776543 24688888888875 3334444555677777 57999999999888753
No 321
>4ah2_B HLA class II histocompatibility antigen gamma CHA class II histocompatibility antigen\,DRB1-1...; MHC II, immune system, SELF antigen; 2.36A {Homo sapiens}
Probab=31.13 E-value=9.5 Score=34.18 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=2.9
Q ss_pred eeeEeecCCCCCCCCC
Q 020109 141 VQTMVMGGGLGNNGGK 156 (331)
Q Consensus 141 ~~~~~~~~g~~~~~~~ 156 (331)
+|+|-|||||.||||-
T Consensus 11 ~~~~~~~~~~~~~~~~ 26 (229)
T 4ah2_B 11 MQALPMGGGGSGGGGS 26 (229)
T ss_dssp CCCC------------
T ss_pred HhhcccCCCcCCCCCC
Confidence 5778888887655443
No 322
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=30.90 E-value=22 Score=27.69 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
++..+++.-..++|+.+|+||.++..|-.
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~ 52 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAEYQS 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666667777788888877665543
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.70 E-value=1.3e+02 Score=29.77 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=34.6
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 227 AEELCGRAILA-----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 227 Aee~~erAL~l-----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++.+|.+||.. +....+-+..+|-.+++ .+++.+|+.++..|-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR-~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYR-KKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhh-cchHHHHHHHHHHHHHH
Confidence 78888888854 33566667777888888 99999999887766554
No 324
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.32 E-value=1.3e+02 Score=30.20 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 206 NALLLGNYARFLKEVRG--DFAKAEELCGRAILA-----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 206 npeal~~yA~lLy~~~G--dyeeAee~~erAL~l-----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.|.++.+||.+- +..- ....+.++|++||.. +....+.+..+|-.+++ .+++.+|+.++..|-+.
T Consensus 261 YPmALgnLgDLE-ei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R-~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 261 YPMALGNLADLE-ELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR-NRNVREALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHH-HHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred cchhhhcccCHh-hcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH-hhhHHHHHHHhhhhhhh
Confidence 466777777663 2322 223478899999873 34556666677888888 89999999888777554
No 325
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.11 E-value=34 Score=26.02 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=17.6
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA 202 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel 202 (331)
.+|+-|-..|+|+.|..||+.+++.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4566666777788888887777663
No 326
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=26.70 E-value=20 Score=29.64 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=1.4
Q ss_pred eeEeecCC
Q 020109 142 QTMVMGGG 149 (331)
Q Consensus 142 ~~~~~~~g 149 (331)
.++..++|
T Consensus 125 L~V~~~~~ 132 (149)
T 3u6r_H 125 VTVSSGTG 132 (149)
T ss_dssp EEEC----
T ss_pred EEEEcCCC
Confidence 33333333
No 327
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.92 E-value=1e+02 Score=22.96 Aligned_cols=13 Identities=38% Similarity=0.312 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 020109 225 AKAEELCGRAILA 237 (331)
Q Consensus 225 eeAee~~erAL~l 237 (331)
++|..++.+|+..
T Consensus 11 ~~A~~l~~~Av~~ 23 (85)
T 2v6x_A 11 TKGIELVQKAIDL 23 (85)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666543
No 328
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=25.71 E-value=67 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc-CCchHHH
Q 020109 257 KDASRAESYFDQAVKSAPDDCY---VLASYAKFLWDA-GEDEEEE 297 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~---vl~~lA~~L~kl-G~~eEa~ 297 (331)
.-|++|.+...+-+++.|.++- +..+++.||+.. ++.++|.
T Consensus 173 ~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac 217 (268)
T 3efz_A 173 EFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM 217 (268)
T ss_dssp HHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3345555555443333555542 344555566543 4555544
No 329
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.05 E-value=60 Score=25.59 Aligned_cols=33 Identities=9% Similarity=-0.143 Sum_probs=22.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG 211 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~ 211 (331)
+|..+..+|+++.|..+|-+||...|.-...+.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~ 58 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 58 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345566677788888888888888776444443
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.85 E-value=2.4e+02 Score=25.68 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---
Q 020109 189 SSSTDAYYEKMIEANPGNALL-------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--- 258 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npea-------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd--- 258 (331)
.+.|+..++..-...+-.... +--.|.+.+...|.|++|++.+++.+..+|.+-.....|+.+..+ ...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~-Kd~~H~ 166 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE-KNLAHP 166 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH-TCTTSH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-cCcccH
Confidence 378888888766666533222 112344445568999999999999999888888888888777665 433
Q ss_pred ------HHHHHHHHHHHHHh
Q 020109 259 ------ASRAESYFDQAVKS 272 (331)
Q Consensus 259 ------~deAieyferALel 272 (331)
|+.-++...+.++.
T Consensus 167 ~lqnFSy~~~~~ki~~fve~ 186 (235)
T 3bu8_A 167 VIQNFSYETFQQKMLRFLES 186 (235)
T ss_dssp HHHTCCHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 44444444555554
No 331
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.73 E-value=2.1e+02 Score=28.82 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=34.5
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 227 AEELCGRAILA-----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 227 Aee~~erAL~l-----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++.+|.+||.. +..+.+-+..+|-.+++ .+++.+|+.++..|-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR-~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR-NRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhh-cchHHHHHHHHHHHHHH
Confidence 67888888754 33566667778888888 99999999888776554
No 332
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=22.58 E-value=3.1e+02 Score=22.23 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=32.0
Q ss_pred HHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 198 KMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 198 kALeldP~npeal~~y--A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
.-|+..++ .++...+ ..+ ..+|+|++|..+.+... .|+.-..+|.+-|+ .|-.++++..+
T Consensus 31 dwL~~~~~-~E~v~lIR~sSL--mNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~r-lGl~s~le~rL 92 (116)
T 2p58_C 31 EWLHLKGE-EEAVQLIRLSSL--MNRGDYASALQQGNKLA-----YPDLEPWLALCEYR-LGLGSALESRL 92 (116)
T ss_dssp HHHHHTTC-HHHHHHHHHHHH--HHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHH-HTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHH--HcchhHHHHHHhcCCCC-----CchHHHHHHHHHHh-cccHHHHHHHH
Confidence 34555555 4443322 222 24677777766554332 44444555666666 67666666554
No 333
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=22.48 E-value=54 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 020109 221 RGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~ 240 (331)
...|.+|.+|+.+||.+|-.
T Consensus 10 k~~h~~AF~~Is~aL~~DE~ 29 (89)
T 3eab_A 10 RVFHKQAFEYISIALRIDED 29 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45577888888888877643
No 334
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.26 E-value=1.7e+02 Score=21.83 Aligned_cols=62 Identities=6% Similarity=0.095 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.++.|+.|+.+.-...-++|..+..+-.++.....+.-.....++++..+--++++.+..+-
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn 70 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFN 70 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56789999999888888888887776666543332222344666666666666666655443
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.85 E-value=3.4e+02 Score=23.07 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=43.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHH----HH-HHHcCCHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYAR----FL-KEVRGDFAKAEELCGRAIL 236 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~----lL-y~~~GdyeeAee~~erAL~ 236 (331)
-.+..++..++|=+|=+.++.+....+.. ..++..+.+ .+ ....|+..-|..++.+|+.
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777799999999999999887654 334444444 22 2346999999999999976
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.53 E-value=77 Score=33.95 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=51.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCH-
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA---------------------PDDC- 277 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld---------------------Pdna- 277 (331)
..+.++-| ...+..-|.++..-+.+|.++.. .|++++|..+|++|-.-- +...
T Consensus 822 ~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~-~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~ 896 (950)
T 4gq2_M 822 LFKQYNAC----MQLIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 896 (950)
T ss_dssp HTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHH
T ss_pred HhcHHHHH----HHHHhhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchh
Confidence 46777644 45667888899888999999999 999999999998765211 1111
Q ss_pred -HHHHHHHHHHHHcCCchHHH
Q 020109 278 -YVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 278 -~vl~~lA~~L~klG~~eEa~ 297 (331)
..|..+..++.+.+-++-+.
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHH
Confidence 24556677777777776665
No 337
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=40 Score=27.66 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=31.3
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
.+..+++|-.|..+||.+|...-. ..|. .-|.++++.++++|.+..+-
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k---~~Al------~lYk~GI~eLe~Gl~I~~~~ 62 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQK---EEAK------NYYKQGIGHLLRGISISSKE 62 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCH---HHHH------HHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCH---HHHH------HHHHHHHHHHHHhccccccC
Confidence 345678999999999998773111 1222 22457778888888887754
No 338
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.32 E-value=82 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALel 272 (331)
.+|.=+.. .|+|+.|+.||+.+++.
T Consensus 17 k~ARe~Al-~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 17 KLAREYAL-LGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHH
Confidence 34555555 78888888888877764
No 339
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.32 E-value=5.1e+02 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..|++|+++++++- ..+|+.-...+..+ .++|+-|=.||.+|-+.
T Consensus 453 ~~Y~~Ai~~L~k~~--~tdd~~~v~~~~~~----ak~yE~aGDyy~~AA~k 497 (526)
T 2wb7_A 453 DEYKAAINDLQKAA--QQDDYQMFLNYLNA----AKKHEMAGDYYVNAARK 497 (526)
T ss_dssp HHHHHHHHHHHHHT--TCCSHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh--ccCCHHHHHHHHHH----hhhhhhccHHHHHHHHH
Confidence 45778888888885 33455433333222 23477777777777765
Done!