BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020112
         (331 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OQO|A Chain A, Ccpa-Hpr-Ser46p-Syn Cre
 pdb|3OQO|C Chain C, Ccpa-Hpr-Ser46p-Syn Cre
          Length = 339

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 3   PSSSSVNGFYSSLTRGIDDLELVYLSNNFM--SIQFLQRVLSLLRSF 47
           P  SS+  FYS L RGI+D+  +Y  N  +  S Q +++ L LL + 
Sbjct: 68  PDISSI--FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM 112


>pdb|2FEP|A Chain A, Structure Of Truncated Ccpa In Complex With P-Ser-Hpr
          And Sulfate Ions
          Length = 289

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 3  PSSSSVNGFYSSLTRGIDDLELVYLSNNFM--SIQFLQRVLSLLRSF 47
          P  SS+  FYS L RGI+D+  +Y  N  +  S Q +++ L LL + 
Sbjct: 24 PDISSI--FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM 68


>pdb|3OQM|A Chain A, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
 pdb|3OQM|C Chain C, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
 pdb|3OQN|A Chain A, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
 pdb|3OQN|C Chain C, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
          Length = 339

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 3   PSSSSVNGFYSSLTRGIDDLELVYLSNNFM--SIQFLQRVLSLLRSF 47
           P  SS+  FYS L RGI+D+  +Y  N  +  S Q +++ L LL + 
Sbjct: 68  PDISSI--FYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,385,128
Number of Sequences: 62578
Number of extensions: 296604
Number of successful extensions: 602
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 4
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)