BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020112
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2
SV=1
Length = 349
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 8 VNGFYSSLTRGIDDLELVYLSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGE--- 64
+N F ++L I L + ++ +++ ++++ + L H+ + L+ L LPV +
Sbjct: 36 LNNFETNLASSISKL-VPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWED 94
Query: 65 KWLDEYMDESSKLWEACHVIKSGIS 89
KW+D Y+D S KL + C+ S ++
Sbjct: 95 KWVDVYLDISVKLLDLCNAFSSELT 119
>sp|P0C7I6|CC159_HUMAN Coiled-coil domain-containing protein 159 OS=Homo sapiens
GN=CCDC159 PE=2 SV=1
Length = 412
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 27 LSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLH----------LPVGEK--WLDEYMDES 74
+S N ++IQ +Q+ R LT + Q+ H +P G W D+ E
Sbjct: 285 ISENLVNIQKMQKTQVKCRKI---LTKMKQQGHETAACPETEEIPQGASGCWKDDLQKEL 341
Query: 75 SKLWEACHVIKSGISGMETYCSAGFNITSSLDNHR 109
S +W A HV+++ I + T CS SSL H+
Sbjct: 342 SDIWSAVHVLQNSIDSL-TLCSGACPKASSLRGHK 375
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 32.3 bits (72), Expect = 5.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 94 YCSAGFNITSSLDNHRHLTPQLSRQVIRAISVCRREAAALEEENRALMETRIQALSLRF 152
Y +AG N H+ + Q RA+ + E+ A EE R E R+ A SL+F
Sbjct: 287 YRAAGEQEKLEATNRYHMPEETRGQPTRAVDLVEEESGAPGEEQRRWEEARLGAASLKF 345
>sp|Q8FPA7|IF2_COREF Translation initiation factor IF-2 OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=infB PE=3 SV=1
Length = 964
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 21 DLELVYLSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGE------------KWLD 68
D EL ++N M Q + L R T++VQ+ L VG+ + +D
Sbjct: 627 DAELDLVANPDMDAQGVAIEAHLDRGRGPVATVIVQRGTLRVGDSIVVGDTYGRVRRMVD 686
Query: 69 EYMDESSKLWEACHVIKSGISGMETYCSAGFNITSSLDNH--RHLTPQLSRQVIRAISVC 126
EY + + + V G++G+ AG N+ D+ R + Q + + A++
Sbjct: 687 EYGRDVDEAGPSRPVQVQGLNGV---PGAGDNLLVVEDDRIARQIANQRNARKRNALAAR 743
Query: 127 RREAAALEEENRALMETRIQALSLRFDEKVSIES 160
R+ +LE+ + L ET + L L+ D S+E+
Sbjct: 744 SRKRVSLEDLDSVLKETSVLNLILKGDNAGSVEA 777
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 32.0 bits (71), Expect = 5.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 94 YCSAGFNITSSLDNHRHLTPQLSRQVIRAISVCRREAAALEEENRALMETRIQALSLRF 152
Y +AG N H+ + Q RA+ + E+ A EE R E R+ A SL+F
Sbjct: 286 YRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKF 344
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 32.0 bits (71), Expect = 5.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 94 YCSAGFNITSSLDNHRHLTPQLSRQVIRAISVCRREAAALEEENRALMETRIQALSLRF 152
Y +AG N H+ + Q RA+ + E+ A EE R E R+ A SL+F
Sbjct: 283 YRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKF 341
>sp|Q3TB82|PKHF1_MOUSE Pleckstrin homology domain-containing family F member 1 OS=Mus
musculus GN=Plekhf1 PE=2 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 61 PVGEKWLDEYMDESSKLWEACHVIKSGISGMETYC-SAGFNITSSLDNHRHLTPQLSRQV 119
P E D+++ + C + +C GF + + R L P+LS +
Sbjct: 141 PTTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKP 200
Query: 120 IRAISVCRREAAA--LEEENR 138
+R S+C RE AA L EE R
Sbjct: 201 LRVCSLCYRELAAQKLREEAR 221
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
Length = 7389
Score = 31.6 bits (70), Expect = 9.0, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 100 NITSSLDNHRHLTPQLSRQVIRAISVCRREAAALEEENRALMETRIQALSLRFDEKVSIE 159
++ +D+H + L+ +SVC + A+ EEN++LME + + VS+E
Sbjct: 4925 SLQKEMDHHFGMLELLNNTANSLLSVCEVDKEAVTEENQSLMEKVNRVTEQLQSKTVSLE 4984
Query: 160 SKLNGFNGFRGV 171
+ F F+ V
Sbjct: 4985 NMAQKFKEFQEV 4996
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,187,586
Number of Sequences: 539616
Number of extensions: 4523968
Number of successful extensions: 12166
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12157
Number of HSP's gapped (non-prelim): 17
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)