Query 020112
Match_columns 331
No_of_seqs 112 out of 269
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05633 DUF793: Protein of un 100.0 5E-59 1.1E-63 444.0 30.4 302 6-328 37-389 (389)
2 PF03087 DUF241: Arabidopsis p 100.0 1.1E-28 2.4E-33 224.8 21.3 220 39-327 1-231 (231)
3 PF05055 DUF677: Protein of un 99.9 7.8E-26 1.7E-30 214.9 20.5 305 8-326 1-334 (336)
4 PF10805 DUF2730: Protein of u 68.3 29 0.00063 27.7 7.2 54 253-313 45-98 (106)
5 PF05633 DUF793: Protein of un 64.5 47 0.001 32.8 9.2 36 284-319 338-373 (389)
6 PF04508 Pox_A_type_inc: Viral 64.3 7.8 0.00017 22.3 2.2 20 296-315 3-22 (23)
7 PF06825 HSBP1: Heat shock fac 61.7 37 0.0008 23.8 5.7 21 286-306 27-47 (54)
8 TIGR02132 phaR_Bmeg polyhydrox 60.8 30 0.00066 30.3 6.3 26 291-316 111-136 (189)
9 PF10018 Med4: Vitamin-D-recep 59.5 73 0.0016 28.0 8.8 41 288-328 23-63 (188)
10 PF13747 DUF4164: Domain of un 49.3 1.2E+02 0.0026 23.4 7.9 31 290-320 49-79 (89)
11 PF02403 Seryl_tRNA_N: Seryl-t 49.3 1.3E+02 0.0027 23.6 8.2 34 281-314 68-101 (108)
12 PF10393 Matrilin_ccoil: Trime 49.1 42 0.00091 22.9 4.2 25 286-310 22-46 (47)
13 PF09771 Tmemb_18A: Transmembr 49.1 15 0.00031 30.4 2.4 25 1-25 1-26 (125)
14 PF07889 DUF1664: Protein of u 48.5 1.3E+02 0.0028 24.9 8.0 7 252-258 70-76 (126)
15 PHA01750 hypothetical protein 47.0 1.1E+02 0.0024 22.3 7.0 32 285-316 40-71 (75)
16 PHA02047 phage lambda Rz1-like 46.1 87 0.0019 24.7 6.1 44 286-329 33-76 (101)
17 PF01601 Corona_S2: Coronaviru 46.0 1.3E+02 0.0028 31.4 9.1 65 252-328 268-337 (610)
18 PF15546 DUF4653: Domain of un 43.8 47 0.001 29.6 4.9 41 291-331 190-230 (239)
19 KOG4191 Histone acetyltransfer 43.5 1.4E+02 0.0031 30.0 8.6 29 295-323 440-468 (516)
20 PF05531 NPV_P10: Nucleopolyhe 43.1 89 0.0019 23.5 5.6 30 287-316 35-64 (75)
21 PF03670 UPF0184: Uncharacteri 42.8 1.2E+02 0.0027 23.2 6.4 40 285-324 31-70 (83)
22 KOG3684 Ca2+-activated K+ chan 42.6 1.1E+02 0.0023 30.9 7.7 65 247-317 400-464 (489)
23 PF07889 DUF1664: Protein of u 40.1 2.1E+02 0.0046 23.6 10.5 31 285-315 80-110 (126)
24 cd07626 BAR_SNX9_like The Bin/ 40.1 2.4E+02 0.0052 25.2 9.0 82 13-97 43-130 (199)
25 PF06120 Phage_HK97_TLTM: Tail 39.6 3.5E+02 0.0075 25.9 10.8 28 285-312 79-106 (301)
26 COG1579 Zn-ribbon protein, pos 39.6 2.2E+02 0.0048 26.2 8.8 26 297-322 55-80 (239)
27 COG3352 FlaC Putative archaeal 38.6 1.6E+02 0.0034 25.2 7.0 44 282-325 67-110 (157)
28 PF15290 Syntaphilin: Golgi-lo 37.6 2.8E+02 0.006 26.3 9.0 35 284-318 121-155 (305)
29 PF03670 UPF0184: Uncharacteri 37.0 85 0.0018 24.1 4.7 33 286-318 25-57 (83)
30 PRK04654 sec-independent trans 36.8 1.8E+02 0.004 26.2 7.6 18 214-231 32-49 (214)
31 PF10267 Tmemb_cc2: Predicted 36.5 1.7E+02 0.0036 29.2 8.0 24 285-308 267-290 (395)
32 PF09177 Syntaxin-6_N: Syntaxi 35.1 2.1E+02 0.0046 22.1 7.1 29 284-312 36-64 (97)
33 KOG1981 SOK1 kinase belonging 34.8 98 0.0021 31.6 6.1 52 9-75 111-165 (513)
34 KOG0804 Cytoplasmic Zn-finger 34.2 3E+02 0.0065 27.8 9.2 30 285-314 419-448 (493)
35 COG1730 GIM5 Predicted prefold 34.0 1E+02 0.0022 26.2 5.3 31 287-317 94-124 (145)
36 PF09006 Surfac_D-trimer: Lung 33.9 1.1E+02 0.0024 20.7 4.3 27 298-324 3-29 (46)
37 PRK05431 seryl-tRNA synthetase 33.2 2E+02 0.0042 28.8 8.1 33 283-315 69-101 (425)
38 KOG1760 Molecular chaperone Pr 33.2 2.8E+02 0.0061 22.9 8.3 85 218-315 22-116 (131)
39 PRK00708 sec-independent trans 33.1 1.9E+02 0.0041 26.1 7.1 12 182-194 11-22 (209)
40 PF05377 FlaC_arch: Flagella a 32.8 1.7E+02 0.0038 20.6 5.4 11 251-261 8-18 (55)
41 PRK11637 AmiB activator; Provi 32.3 5.1E+02 0.011 25.6 13.9 29 285-313 94-122 (428)
42 PLN02678 seryl-tRNA synthetase 32.2 2.1E+02 0.0046 28.9 8.1 35 282-316 73-107 (448)
43 PF03962 Mnd1: Mnd1 family; I 32.2 3.5E+02 0.0076 23.8 9.6 21 247-267 107-127 (188)
44 PHA02675 ORF104 fusion protein 31.5 1.8E+02 0.0039 22.3 5.6 32 288-319 45-76 (90)
45 TIGR00414 serS seryl-tRNA synt 31.0 2.3E+02 0.005 28.2 8.1 35 282-316 71-105 (418)
46 PLN02320 seryl-tRNA synthetase 30.8 1.6E+02 0.0035 30.2 7.0 34 282-315 132-165 (502)
47 KOG0971 Microtubule-associated 30.7 3E+02 0.0065 30.4 9.0 24 287-310 325-348 (1243)
48 TIGR02976 phageshock_pspB phag 29.0 1E+02 0.0022 23.2 4.0 20 290-309 45-64 (75)
49 smart00787 Spc7 Spc7 kinetocho 28.2 5.4E+02 0.012 24.6 9.9 57 250-322 204-260 (312)
50 PF12652 CotJB: CotJB protein; 27.7 1.9E+02 0.004 21.9 5.2 53 247-305 3-55 (78)
51 PF06667 PspB: Phage shock pro 26.6 1.2E+02 0.0026 22.8 4.0 16 288-303 50-65 (75)
52 TIGR01834 PHA_synth_III_E poly 26.3 5.2E+02 0.011 25.0 9.2 27 282-308 291-317 (320)
53 PF05377 FlaC_arch: Flagella a 25.1 1.2E+02 0.0027 21.3 3.6 22 289-310 16-37 (55)
54 PF00429 TLV_coat: ENV polypro 25.0 1.8E+02 0.004 30.2 6.4 41 284-324 425-465 (561)
55 KOG4603 TBP-1 interacting prot 24.9 2E+02 0.0044 25.2 5.5 43 250-306 100-142 (201)
56 PF13887 MRF_C1: Myelin gene r 24.9 89 0.0019 20.0 2.5 22 287-308 14-35 (36)
57 PF04380 BMFP: Membrane fusoge 24.4 1.7E+02 0.0037 21.9 4.6 26 283-308 53-78 (79)
58 PF15136 UPF0449: Uncharacteri 24.3 1.2E+02 0.0025 24.0 3.7 29 285-313 69-97 (97)
59 COG1382 GimC Prefoldin, chaper 23.7 3.9E+02 0.0085 21.9 6.8 43 286-328 69-111 (119)
60 PRK09458 pspB phage shock prot 23.7 1.5E+02 0.0032 22.3 4.0 16 288-303 50-65 (75)
61 PRK11637 AmiB activator; Provi 23.5 7.3E+02 0.016 24.5 10.6 35 283-317 99-133 (428)
62 COG3883 Uncharacterized protei 23.3 5.6E+02 0.012 24.0 8.6 46 249-303 51-96 (265)
63 PF06103 DUF948: Bacterial pro 23.3 3.3E+02 0.0071 20.5 8.1 12 297-308 71-82 (90)
64 PHA02675 ORF104 fusion protein 22.9 3.5E+02 0.0077 20.7 6.5 47 281-327 31-77 (90)
65 PLN02372 violaxanthin de-epoxi 22.5 5.5E+02 0.012 25.7 8.7 34 295-328 402-437 (455)
66 PF04799 Fzo_mitofusin: fzo-li 22.1 4.7E+02 0.01 22.9 7.3 29 287-315 137-165 (171)
67 PF07956 DUF1690: Protein of U 21.9 4.5E+02 0.0098 22.1 7.1 12 225-236 37-48 (142)
68 TIGR03185 DNA_S_dndD DNA sulfu 21.8 5.4E+02 0.012 27.1 9.4 65 248-319 396-460 (650)
69 PF04782 DUF632: Protein of un 21.5 5.8E+02 0.013 24.4 8.6 38 276-313 125-162 (312)
70 COG2900 SlyX Uncharacterized p 21.5 2.7E+02 0.0058 20.7 4.9 35 288-322 23-57 (72)
71 PF11932 DUF3450: Protein of u 21.2 6.3E+02 0.014 23.0 10.5 20 246-265 52-71 (251)
72 PF10392 COG5: Golgi transport 20.6 4.8E+02 0.01 21.3 8.5 41 285-325 70-110 (132)
73 PF14584 DUF4446: Protein of u 20.4 3.5E+02 0.0076 23.0 6.2 32 286-317 52-83 (151)
74 PRK09343 prefoldin subunit bet 20.3 3.2E+02 0.0069 22.2 5.8 44 285-328 69-112 (121)
75 PHA01750 hypothetical protein 20.0 3.6E+02 0.0078 19.7 5.5 33 250-298 42-74 (75)
No 1
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=5e-59 Score=443.96 Aligned_cols=302 Identities=25% Similarity=0.401 Sum_probs=252.9
Q ss_pred ccHHhHHHHHHHhHhhhhchhc-cCCccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccchHHHHhhhhhHHHH
Q 020112 6 SSVNGFYSSLTRGIDDLELVYL-SNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHL-----PVGEKWLDEYMDESSKLWE 79 (331)
Q Consensus 6 ~~l~~F~~~l~~~L~~L~~~~~-~~~~lSl~wl~~~l~~L~~~~~~~~~Li~~l~l-----p~~~kwveeyLd~S~klLD 79 (331)
++|+.|++|++++|.+|.+... ++++||++||+++|+.|.+||++|..+|+++.. |+.||||+||||+|+|+||
T Consensus 37 ~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLD 116 (389)
T PF05633_consen 37 AELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLD 116 (389)
T ss_pred hhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998754 368999999999999999999999999998765 4479999999999999999
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHhH-----------HHHHHHHH------
Q 020112 80 ACHVIKSGISGMETYCSAGFNITSSLDNHRHLTPQLSRQVIRAISVCRREAAALE-----------EENRALME------ 142 (331)
Q Consensus 80 vCna~~d~i~~~~~~~~~lq~a~s~l~~~~~~~~~~~~~~~ra~k~~~~~~~~~~-----------~~~~~~~~------ 142 (331)
|||+++++|+++++|++++++|+|+|+..+.+++ ++|.||++++.+-..++. ++||++.+
T Consensus 117 vCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~~~---~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~ 193 (389)
T PF05633_consen 117 VCNAIRDGISQLRQWQLLLQIALHALDSSRPLGE---GQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGR 193 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCC
Confidence 9999999999999999999999999998866777 899999998766443321 22332211
Q ss_pred -----------HHHhcccccc-------------ccccccccccc---cchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020112 143 -----------TRIQALSLRF-------------DEKVSIESKLN---GFNGFRGVLYGMRNVSSLLLMILLYGVVYCWP 195 (331)
Q Consensus 143 -----------~~~~~ls~~l-------------~~k~~~~~k~~---~~~~~~~vl~~~~~vt~~v~~vl~~~~l~~~p 195 (331)
...++++|++ ++++.+ .|.+ ..++++.++|+|++||+||||+|++ |++|++
T Consensus 194 ~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~-Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVA-A~pc~~ 271 (389)
T PF05633_consen 194 RSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVL-PKGKESAKGRGLLRAMYGMKSVTVFVCWVLVA-AFPCQD 271 (389)
T ss_pred CCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCC-CCCccccccchHHHHHHHHHHHHHHHHHHHHH-eeecCC
Confidence 1233444422 223222 1222 2379999999999999999999999 899998
Q ss_pred CCccCCCCCCC-CCccccchhhHhhHHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020112 196 ESNNFLGGGGG-YEGRLCFGSAFMISTARLQERVAAEINQMSVSGCGRQQQGVLLYEFRRSKMALDELRGELERKCGQGQ 274 (331)
Q Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~Lq~~v~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L~~~~~~~~~~~~ 274 (331)
+.+ ..+.. +|++++|+++++ .||++|++|+++++. +|++++++||+++++++++|+..++.. +
T Consensus 272 rgL---~~~l~~vP~~~~WA~s~~----~LQ~rI~eEikkk~~-----kgs~gLLkEl~~ve~~vr~L~el~d~~----~ 335 (389)
T PF05633_consen 272 RGL---QVHLSAVPRQFSWAPSFI----SLQERINEEIKKKER-----KGSCGLLKELQQVEASVRELHELIDSF----Q 335 (389)
T ss_pred ccc---cCCCCCCccccccchHHH----HHHHHHHHHHhhccc-----cCcchHHHHHHHHHHHHHHHHHHHHhc----c
Confidence 753 44555 677788887776 999999999998875 668999999999999999999877654 5
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhc
Q 020112 275 MAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFC 328 (331)
Q Consensus 275 ~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~il 328 (331)
+|+++|+.+++++.|+||++.|+.|++|+|+|++|||++||+||++|+++||+|
T Consensus 336 ~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 336 FPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 888899999999999999999999999999999999999999999999999976
No 2
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=99.96 E-value=1.1e-28 Score=224.83 Aligned_cols=220 Identities=21% Similarity=0.276 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--------ccchHHHHhhhhhHHHHHHHHHHHHHhhhHhHHHHHHHHHhhhccCCC
Q 020112 39 RVLSLLRSFHSQLTLLVQKLHLPV--------GEKWLDEYMDESSKLWEACHVIKSGISGMETYCSAGFNITSSLDNHRH 110 (331)
Q Consensus 39 ~~l~~L~~~~~~~~~Li~~l~lp~--------~~kwveeyLd~S~klLDvCna~~d~i~~~~~~~~~lq~a~s~l~~~~~ 110 (331)
++|.+|.++|+|+++|+ ++|. .++|||++||+|++|||+||+++|.+.++|++...+| +++||+++
T Consensus 1 dgL~~L~~Ly~~~~ell---~lp~tq~al~~~~~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLq---salRRr~~ 74 (231)
T PF03087_consen 1 DGLSGLKDLYECLEELL---QLPSTQQALSHHQEKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQ---SALRRRDD 74 (231)
T ss_pred CchhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccc
Confidence 36889999999999999 7776 2699999999999999999999999999999777766 66676652
Q ss_pred --CChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHHH
Q 020112 111 --LTPQLSRQVIRAISVCRREAAALEEENRALMETRIQALSLRFDEKVSIESKLN-GFNGFRGVLYGMRNVSSLLLMILL 187 (331)
Q Consensus 111 --~~~~~~~~~~ra~k~~~~~~~~~~~~~~~~~~~~~~~ls~~l~~k~~~~~k~~-~~~~~~~vl~~~~~vt~~v~~vl~ 187 (331)
+..++ ..|++++|+++|++.+.... ++.+.++ +. +...++ ....++.+++++..+|+.++..|+
T Consensus 75 ~~~~~~i-~sy~~~rKk~kK~i~K~~~~----lk~~~~~-~~-------~~~~~~~~~~~vv~~l~ea~~~t~si~~sll 141 (231)
T PF03087_consen 75 GSIESEI-ASYIRSRKKAKKEIAKLLRS----LKRMSNK-SS-------SSNDDDEHLSAVVRVLREAREITVSIFESLL 141 (231)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHH----HHhhhcc-cC-------CCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444 78999999998888654221 1222121 11 111112 356788999999999998888888
Q ss_pred HHhhccCCCCccCCCCCCCCCccccchhhHhhHHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 020112 188 YGVVYCWPESNNFLGGGGGYEGRLCFGSAFMISTARLQERVAAEINQMSVSGCGRQQQGVLLYEFRRSKMALDELRGELE 267 (331)
Q Consensus 188 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lq~~v~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L~~~~~ 267 (331)
. +++.+...+ .+ .+|++ .++++ +++..+... ....+|++.++.+...
T Consensus 142 ~-~ls~~~~~~--~~-----~~wsl-vsk~~------~~~~~~~~~------------~~~~~e~~~~d~~~~~------ 188 (231)
T PF03087_consen 142 S-FLSSPSKKS--KS-----SKWSL-VSKLM------QKKRSCDSS------------EENRNEFEKVDAALKS------ 188 (231)
T ss_pred H-HHHcccccc--cc-----cchhH-HHHHH------hcccccchh------------HHHHHHHHHHHHHhhh------
Confidence 7 776632221 11 23333 22333 444322111 1235889988876642
Q ss_pred HhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhh
Q 020112 268 RKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDF 327 (331)
Q Consensus 268 ~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~i 327 (331)
-.+.++..++.+++||.+|++||.++|++||+||++|++||||
T Consensus 189 -----------------~~e~~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVSLLNI 231 (231)
T PF03087_consen 189 -----------------DEEEVQNAQKRLEELEECIEELEEGLECVFRRLIKTRVSLLNI 231 (231)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0146778889999999999999999999999999999999998
No 3
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=99.94 E-value=7.8e-26 Score=214.91 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=224.8
Q ss_pred HHhHHHHHHHhHhhhhchhccC---CccCHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCccchHHHHhhhhhHHHH
Q 020112 8 VNGFYSSLTRGIDDLELVYLSN---NFMSIQFLQRVLSLLRSFHSQLTLLVQKLH-----LPVGEKWLDEYMDESSKLWE 79 (331)
Q Consensus 8 l~~F~~~l~~~L~~L~~~~~~~---~~lSl~wl~~~l~~L~~~~~~~~~Li~~l~-----lp~~~kwveeyLd~S~klLD 79 (331)
|++||++|+++++.++.+++++ +.+|++++.+..+.|+++++++.++|.+++ -|....+|++|||.|.+.+|
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~ 80 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASD 80 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHH
Confidence 5789999999999999988764 578899999999999999999999997654 23356789999999999999
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHhhhccCC-----CCChhhHHHHHHHHHHHHH-HHHH--hHHH-----HH---HHHHH
Q 020112 80 ACHVIKSGISGMETYCSAGFNITSSLDNHR-----HLTPQLSRQVIRAISVCRR-EAAA--LEEE-----NR---ALMET 143 (331)
Q Consensus 80 vCna~~d~i~~~~~~~~~lq~a~s~l~~~~-----~~~~~~~~~~~ra~k~~~~-~~~~--~~~~-----~~---~~~~~ 143 (331)
+|+++..+|.++|..+..++.|+..++... |.++ .+|.++..++++ ..++ +... ++ ..+..
T Consensus 81 ~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~---~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~ 157 (336)
T PF05055_consen 81 FCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQ---KKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSS 157 (336)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccc---hhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999997653 1233 778888887754 2222 1111 11 11233
Q ss_pred HHhcccccccccccccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCCCCCCCCCccccchhhHhhH
Q 020112 144 RIQALSLRFDEKVSIESKL---NGFNGFRGVLYGMRNVSSLLLMILLYGVVYCWPESNNFLGGGGGYEGRLCFGSAFMIS 220 (331)
Q Consensus 144 ~~~~ls~~l~~k~~~~~k~---~~~~~~~~vl~~~~~vt~~v~~vl~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (331)
+++++.. .+.+.+.|. +.++.+.++++++.++++++++++++ +++.+|... .+...+.| ..-..+|..+
T Consensus 158 Ll~kL~~---~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~a-a~a~~~vv~--~aa~~a~P--~~~~gkw~~~ 229 (336)
T PF05055_consen 158 LLEKLDS---RKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAA-AHAVPAVVA--LAAALAAP--IGSVGKWCGS 229 (336)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhhhHHHH--HHHHHccc--hHHHhHHHHH
Confidence 3444331 022333333 23456678999999999999999988 565444321 11111112 1112368877
Q ss_pred HHHHHHH-HHHHHhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhh-hhhHHHHHHHHHHHHHH
Q 020112 221 TARLQER-VAAEINQMSVSGCGRQQQGVLLYEFRRSKMALDELRGELERKCGQGQMAVDWEN-EVGIRERVENLRGCFGV 298 (331)
Q Consensus 221 l~~Lq~~-v~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~-~~~~~~~v~el~~~~e~ 298 (331)
+++.+.+ ++......+. |.+|++++.++|+.|..-|.+|.+.|+.+...++|+++.++ ...+++.|+++++..+.
T Consensus 230 ~~~k~~~al~~~~~~l~~---aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~ 306 (336)
T PF05055_consen 230 LWKKYEEALKKQKEQLDA---AAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVES 306 (336)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHH
Confidence 7776543 3322111111 44899999999999999999999999888888888876543 45789999999999999
Q ss_pred HhhhHhhHHHHHhHHHHHHHHHHHHHhh
Q 020112 299 LRSGAENIVGQLDDFFDEIVEGRKKLLD 326 (331)
Q Consensus 299 Le~gle~le~~v~~lFr~li~~R~~LL~ 326 (331)
|.+-||+||+++.-+|+.|.++|..+|.
T Consensus 307 f~~qleELeehv~lC~~tInrAR~lVlq 334 (336)
T PF05055_consen 307 FTEQLEELEEHVYLCFKTINRARTLVLQ 334 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986
No 4
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.31 E-value=29 Score=27.68 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 253 RRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 253 ~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
...+..+..+...++..+. .++...++..+.++.+.+.+++..+++++.+++-|
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt-------~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPT-------RDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334455555544443322 33455677788888888888888888877766544
No 5
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=64.55 E-value=47 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVE 319 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~ 319 (331)
...++.++++..+++|....+.|++++|-|=+.+-.
T Consensus 338 ~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre 373 (389)
T PF05633_consen 338 LEEEKEEEVREAVEELARVCEALSQGLDPLERQVRE 373 (389)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 456788999999999999999999999998887643
No 6
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=64.28 E-value=7.8 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHhhhHhhHHHHHhHHHH
Q 020112 296 FGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 296 ~e~Le~gle~le~~v~~lFr 315 (331)
++.+...|.+||.+++++++
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45667778888888888865
No 7
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=61.66 E-value=37 Score=23.83 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhHhhH
Q 020112 286 RERVENLRGCFGVLRSGAENI 306 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~l 306 (331)
-.+++++-++++.||..|.+|
T Consensus 27 ~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 27 LGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344555544444444444444
No 8
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=60.83 E-value=30 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHHHHH
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDFFDE 316 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~lFr~ 316 (331)
.+++.+-+++..|..|+..||.+.+-
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 9
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.46 E-value=73 Score=27.99 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhc
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFC 328 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~il 328 (331)
.-++++..+..|+..++.++.++.++=+.|..+|..|-.++
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888888888889999999999887765
No 10
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.34 E-value=1.2e+02 Score=23.38 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhHhhHHHHHhHHHHHHHHH
Q 020112 290 ENLRGCFGVLRSGAENIVGQLDDFFDEIVEG 320 (331)
Q Consensus 290 ~el~~~~e~Le~gle~le~~v~~lFr~li~~ 320 (331)
..|...++..+...+.|+..-.++.++|..+
T Consensus 49 ~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 49 SRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555556666665543
No 11
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.27 E-value=1.3e+02 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 281 NEVGIRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 281 ~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
+.+.....+.+++..+..++.-+..++.+++.+.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888877664
No 12
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=49.11 E-value=42 Score=22.86 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHH
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQL 310 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v 310 (331)
...++.|.+.++.+...|+.||+++
T Consensus 22 ~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666777777777777654
No 13
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=49.09 E-value=15 Score=30.44 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCCC-cccHHhHHHHHHHhHhhhhch
Q 020112 1 MDPS-SSSVNGFYSSLTRGIDDLELV 25 (331)
Q Consensus 1 ~~~~-~~~l~~F~~~l~~~L~~L~~~ 25 (331)
|+|+ +-+|.+|+..|+|-.+.+.++
T Consensus 1 ~~~t~ceDLkaFErRLtEvI~~l~Ps 26 (125)
T PF09771_consen 1 MEPTACEDLKAFERRLTEVINSLQPS 26 (125)
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCCc
Confidence 8998 799999999999999888764
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.52 E-value=1.3e+02 Score=24.89 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 020112 252 FRRSKMA 258 (331)
Q Consensus 252 l~~v~~a 258 (331)
++.++.-
T Consensus 70 Id~vd~k 76 (126)
T PF07889_consen 70 IDRVDDK 76 (126)
T ss_pred HHHHHhh
Confidence 3333333
No 15
>PHA01750 hypothetical protein
Probab=47.00 E-value=1.1e+02 Score=22.32 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFDE 316 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr~ 316 (331)
++...++|+..++++....|.+++||.++-+.
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44455566666666666666666666665543
No 16
>PHA02047 phage lambda Rz1-like protein
Probab=46.05 E-value=87 Score=24.66 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhcc
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFCS 329 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~ils 329 (331)
.+.++.+...+|.++..+..+.++|+.+=.+--+.|.++.+-|.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888888888888888888888774
No 17
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=45.98 E-value=1.3e+02 Score=31.41 Aligned_cols=65 Identities=22% Similarity=0.452 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHH-----HHHHHHHHHHHhh
Q 020112 252 FRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDF-----FDEIVEGRKKLLD 326 (331)
Q Consensus 252 l~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~l-----Fr~li~~R~~LL~ 326 (331)
|..+..|+.++.+.+. .+...+..-+.+|...+++....|+++=..+|.+ =+|||.||.+-||
T Consensus 268 ~~t~~~Al~KiQ~VVN------------~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAdaQVDRLItGRL~aLn 335 (610)
T PF01601_consen 268 FTTTASALNKIQDVVN------------QQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADAQVDRLITGRLAALN 335 (610)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHH
Confidence 4555555555554432 2344677788888888888888888887777666 4789999999999
Q ss_pred hc
Q 020112 327 FC 328 (331)
Q Consensus 327 il 328 (331)
.+
T Consensus 336 af 337 (610)
T PF01601_consen 336 AF 337 (610)
T ss_dssp --
T ss_pred HH
Confidence 76
No 18
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=43.83 E-value=47 Score=29.64 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhccCC
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFCSHR 331 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~ils~~ 331 (331)
.|-+++..|...+-+-.+.+-+-|+.|...|++|+-.+-||
T Consensus 190 ALl~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq~ 230 (239)
T PF15546_consen 190 ALLRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQR 230 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcc
Confidence 34456666666676677777789999999999999887653
No 19
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=43.47 E-value=1.4e+02 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHhhhHhhHHHHHhHHHHHHHHHHHH
Q 020112 295 CFGVLRSGAENIVGQLDDFFDEIVEGRKK 323 (331)
Q Consensus 295 ~~e~Le~gle~le~~v~~lFr~li~~R~~ 323 (331)
...++...++++.+|+++.|...++.|+.
T Consensus 440 a~qe~~q~lddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 440 ARQEFQQVLDDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999874
No 20
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=43.14 E-value=89 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHhHHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQLDDFFDE 316 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v~~lFr~ 316 (331)
..|.++..+++++...++.|+.+|+..-+.
T Consensus 35 ~~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 35 PDVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888887776443
No 21
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=42.79 E-value=1.2e+02 Score=23.17 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
+....+.|-.+++.||+.-+.|..++.+|-..=..+|.++
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666667777777777776666666666554
No 22
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=42.63 E-value=1.1e+02 Score=30.94 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHH
Q 020112 247 VLLYEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEI 317 (331)
Q Consensus 247 ~~l~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~l 317 (331)
-++++|.+|+--.++|.+..+..++- ......+-+.++++...-++|+..|+.||.+++.+-..+
T Consensus 400 ~AI~~fR~Vk~~qRkl~e~~nsl~d~------aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 400 QAIHQFRSVKWEQRKLSEQANSLVDL------AKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASL 464 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888887653333210 001235667889999999999999999999998876544
No 23
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.14 E-value=2.1e+02 Score=23.62 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
..+..+.++..+.++...++.+...++.+++
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 24
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=40.09 E-value=2.4e+02 Score=25.16 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=50.4
Q ss_pred HHHHHhHhhhhchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccch--HHHHhhhhhHHH----HHHHHHHH
Q 020112 13 SSLTRGIDDLELVYLSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGEKW--LDEYMDESSKLW----EACHVIKS 86 (331)
Q Consensus 13 ~~l~~~L~~L~~~~~~~~~lSl~wl~~~l~~L~~~~~~~~~Li~~l~lp~~~kw--veeyLd~S~klL----DvCna~~d 86 (331)
..+...+..|-.+++.++.-....|..+|..+-+++..+..|..+ .|. ..| +-|+|.+-..+| ||-+.-+.
T Consensus 43 qk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~e--Qa~-~D~~~l~E~L~eY~gll~~~pdi~~~~k~ 119 (199)
T cd07626 43 QKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAE--QPK-HDLIPLLDGLHEYKGLLSTFPDIIGVHKG 119 (199)
T ss_pred HHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHH--hhH-hhHHHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 344555566655555443334456999999999999999999953 222 233 556666666665 44455555
Q ss_pred HHhhhHhHHHH
Q 020112 87 GISGMETYCSA 97 (331)
Q Consensus 87 ~i~~~~~~~~~ 97 (331)
++...|+....
T Consensus 120 al~K~kE~~r~ 130 (199)
T cd07626 120 AVQKVKECERL 130 (199)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 25
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.58 E-value=3.5e+02 Score=25.88 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDD 312 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~ 312 (331)
..+.+.+.++.++.++..++++..++..
T Consensus 79 ~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 79 AEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444443
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=39.55 E-value=2.2e+02 Score=26.25 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=9.8
Q ss_pred HHHhhhHhhHHHHHhHHHHHHHHHHH
Q 020112 297 GVLRSGAENIVGQLDDFFDEIVEGRK 322 (331)
Q Consensus 297 e~Le~gle~le~~v~~lFr~li~~R~ 322 (331)
+.|+.-+-.++..+.++..++=++|.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444433333
No 27
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.60 E-value=1.6e+02 Score=25.23 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHh
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLL 325 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL 325 (331)
.......++.++..++.|+..+.+|..-++.+.+.+.--|-..+
T Consensus 67 ~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~ 110 (157)
T COG3352 67 IEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTP 110 (157)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH
Confidence 34577888889999999999999999998888888776655443
No 28
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.59 E-value=2.8e+02 Score=26.27 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIV 318 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li 318 (331)
+.+..++.|++.++.++..|-+=.++|-..|-+|-
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhh
Confidence 45677888999999999999999999999998873
No 29
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=37.00 E-value=85 Score=24.06 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHH
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQLDDFFDEIV 318 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v~~lFr~li 318 (331)
...+..+-..++.|..+|+-||..-+.+.-+|.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~ 57 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQ 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345667777777777777777777777776654
No 30
>PRK04654 sec-independent translocase; Provisional
Probab=36.80 E-value=1.8e+02 Score=26.23 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=7.3
Q ss_pred hhhHhhHHHHHHHHHHHH
Q 020112 214 GSAFMISTARLQERVAAE 231 (331)
Q Consensus 214 ~~~~~~~l~~Lq~~v~~e 231 (331)
..+|+..+-+.-+.+..|
T Consensus 32 lGk~irk~R~~~~~vk~E 49 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQE 49 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345653333333333333
No 31
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.50 E-value=1.7e+02 Score=29.16 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVG 308 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~ 308 (331)
+.+.+|--+..+..|...|.+.|+
T Consensus 267 lNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 267 LNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444555555544444
No 32
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=35.12 E-value=2.1e+02 Score=22.06 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDD 312 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~ 312 (331)
+....-.+|+..|+.++.-|++|++-|+-
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666655543
No 33
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=34.75 E-value=98 Score=31.61 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=39.2
Q ss_pred HhHHHHHHHhHhhhhchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccch---HHHHhhhhh
Q 020112 9 NGFYSSLTRGIDDLELVYLSNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGEKW---LDEYMDESS 75 (331)
Q Consensus 9 ~~F~~~l~~~L~~L~~~~~~~~~lSl~wl~~~l~~L~~~~~~~~~Li~~l~lp~~~kw---veeyLd~S~ 75 (331)
++|..+|.+.++ . .+++ +..+..+|.++.+++-+++ +|.+.+| |+|.||..+
T Consensus 111 kAFWD~l~~qls---~--~PPd------fs~~i~ll~Evkd~L~~~l----lp~~~r~r~eInevLD~dl 165 (513)
T KOG1981|consen 111 KAFWDDLREQLS---K--DPPD------FSYAISLLKEVKDTLLDLL----LPVHTRLRAEINEVLDTDL 165 (513)
T ss_pred HHHHHHHHHHHh---c--CCcc------HHHHHHHHHHHHHHHHHHh----CCccHHHHHHHHHHHhHHH
Confidence 678888776655 1 1222 4667888889888888888 5888888 999999876
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.25 E-value=3e+02 Score=27.80 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
+.+.-+..+..+...+.-|++|++||+++-
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 344555666777888899999999999873
No 35
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=1e+02 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHhHHHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQLDDFFDEI 317 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v~~lFr~l 317 (331)
++++-+++++++|+..++.+...++++..++
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~ 124 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRI 124 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 36
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.92 E-value=1.1e+02 Score=20.73 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 298 VLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 298 ~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
+|+..++.|+.||+.|=..+-+-+++.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444443
No 37
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.19 E-value=2e+02 Score=28.80 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 283 VGIRERVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 283 ~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
+.+...+.++++.+..++.-++.++.+++...-
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777766543
No 38
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=33.15 E-value=2.8e+02 Score=22.93 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=44.6
Q ss_pred hhHHHHHHHHH---HHHHhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHHH---hhccCC---cccchh-hhhhHHH
Q 020112 218 MISTARLQERV---AAEINQMSVSGCGRQQQGVLLYEFRRSKMALDELRGELER---KCGQGQ---MAVDWE-NEVGIRE 287 (331)
Q Consensus 218 ~~~l~~Lq~~v---~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L~~~~~~---~~~~~~---~~~~~e-~~~~~~~ 287 (331)
++-.++++.|+ +.+++... +++++++.|..++.-.-+. .+..++ .-...+ -.+.+.+
T Consensus 22 iN~Fsrl~~R~~~lk~dik~~k-------------~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe 88 (131)
T KOG1760|consen 22 INEFSRLNSRKDDLKADIKEAK-------------TEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEE 88 (131)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH-------------HHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHH
Confidence 44555887775 45554432 6788888887776532100 110000 000111 1223444
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
.-+.+.+.+++|+...+.++.+++++=.
T Consensus 89 ~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 89 KKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777766543
No 39
>PRK00708 sec-independent translocase; Provisional
Probab=33.08 E-value=1.9e+02 Score=26.14 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=5.2
Q ss_pred HHHHHHHHhhccC
Q 020112 182 LLMILLYGVVYCW 194 (331)
Q Consensus 182 v~~vl~~~~l~~~ 194 (331)
|..|++. ++-|+
T Consensus 11 vI~vVaL-vV~GP 22 (209)
T PRK00708 11 VIAIVLI-VVVGP 22 (209)
T ss_pred HHHHHHH-hhcCc
Confidence 3334443 44454
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.81 E-value=1.7e+02 Score=20.58 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 020112 251 EFRRSKMALDE 261 (331)
Q Consensus 251 El~~v~~av~~ 261 (331)
|+.+++..+..
T Consensus 8 ~~~~~~~~i~t 18 (55)
T PF05377_consen 8 ELPRIESSINT 18 (55)
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 41
>PRK11637 AmiB activator; Provisional
Probab=32.31 E-value=5.1e+02 Score=25.65 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
....++.+++.++.++..|+.+++.++..
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 42
>PLN02678 seryl-tRNA synthetase
Probab=32.24 E-value=2.1e+02 Score=28.88 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDE 316 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~ 316 (331)
.+++.+.+.+|+..+..++.-++.++.++++++-.
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677778888888888777777777765543
No 43
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.20 E-value=3.5e+02 Score=23.77 Aligned_cols=21 Identities=48% Similarity=0.547 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 020112 247 VLLYEFRRSKMALDELRGELE 267 (331)
Q Consensus 247 ~~l~El~~v~~av~~L~~~~~ 267 (331)
..+.+++.+...+.+|...+.
T Consensus 107 ~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 107 ELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 44
>PHA02675 ORF104 fusion protein; Provisional
Probab=31.51 E-value=1.8e+02 Score=22.31 Aligned_cols=32 Identities=6% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFDEIVE 319 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr~li~ 319 (331)
.-+.+-++|..+.+.|+.||+.++-+-+-+|.
T Consensus 45 ~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 45 SYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677888888888888887777665543
No 45
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.97 E-value=2.3e+02 Score=28.24 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDE 316 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~ 316 (331)
.+.+.+.+.+++..+..++..++.++.++++..-.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777778778888777777777777765543
No 46
>PLN02320 seryl-tRNA synthetase
Probab=30.84 E-value=1.6e+02 Score=30.22 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
.+.+.+.+.+|+..+..|+..+..++.+++++.-
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777666554
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.73 E-value=3e+02 Score=30.44 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQL 310 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v 310 (331)
++++-|+.-++.+.+.+|.|+-.+
T Consensus 325 ERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 48
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.04 E-value=1e+02 Score=23.15 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhHhhHHHH
Q 020112 290 ENLRGCFGVLRSGAENIVGQ 309 (331)
Q Consensus 290 ~el~~~~e~Le~gle~le~~ 309 (331)
++|....+.|++.++.||+=
T Consensus 45 ~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 49
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.17 E-value=5.4e+02 Score=24.63 Aligned_cols=57 Identities=28% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHH
Q 020112 250 YEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRK 322 (331)
Q Consensus 250 ~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~ 322 (331)
.|+.+++..+..+...+..+ +..+++++..+..++..|+....+..++-..|-..+.
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~----------------~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIK----------------VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555444322 3344455555555555555554444444444444433
No 50
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=27.67 E-value=1.9e+02 Score=21.86 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhh
Q 020112 247 VLLYEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAEN 305 (331)
Q Consensus 247 ~~l~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~ 305 (331)
.+|.+|+.++-++..|.--+|.++. +.+..+.-+..++..++..++.+..-.|
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~------d~~Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPD------DQEALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999988887743 2222233344444444444444444433
No 51
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.59 E-value=1.2e+02 Score=22.78 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhhH
Q 020112 288 RVENLRGCFGVLRSGA 303 (331)
Q Consensus 288 ~v~el~~~~e~Le~gl 303 (331)
.++.++.++++||.-|
T Consensus 50 ~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 50 QAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 52
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.32 E-value=5.2e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVG 308 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~ 308 (331)
.+++...+.+|++.+..|+..|..++.
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455555555555555555554443
No 53
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.11 E-value=1.2e+02 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhHhhHHHHH
Q 020112 289 VENLRGCFGVLRSGAENIVGQL 310 (331)
Q Consensus 289 v~el~~~~e~Le~gle~le~~v 310 (331)
+..+++..+.+.+.+|.+++.|
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 54
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=25.00 E-value=1.8e+02 Score=30.21 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
.....-.++..-++++++.|..|+++|+.+...+.+.|..|
T Consensus 425 ~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 425 QYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 45556667777888889999999999999999999999874
No 55
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.90 E-value=2e+02 Score=25.19 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhH
Q 020112 250 YEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENI 306 (331)
Q Consensus 250 ~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~l 306 (331)
.+...|++.++.|...+. .+++++.+++|++.|...++.|..+
T Consensus 100 ~t~s~veaEik~L~s~Lt--------------~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 100 QTCSYVEAEIKELSSALT--------------TEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHhcC--------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666654321 2346666666766666666666665
No 56
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=24.88 E-value=89 Score=19.99 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhHhhHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVG 308 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~ 308 (331)
.+|+||-+.-+.|+..|+.+|+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4778888888888888887764
No 57
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=24.37 E-value=1.7e+02 Score=21.94 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhHHH
Q 020112 283 VGIRERVENLRGCFGVLRSGAENIVG 308 (331)
Q Consensus 283 ~~~~~~v~el~~~~e~Le~gle~le~ 308 (331)
+..+..+..++..+++|+..+..||.
T Consensus 53 d~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 53 DAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555555555555543
No 58
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=24.31 E-value=1.2e+02 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
+++.-..|++.|+.|+..-+.|++.|+++
T Consensus 69 Lqqa~~~Lkkk~e~L~~age~Le~~i~~v 97 (97)
T PF15136_consen 69 LQQARDQLKKKCEELRQAGEELERDIEQV 97 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566788888999999999888888753
No 59
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.72 E-value=3.9e+02 Score=21.90 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhc
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFC 328 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~il 328 (331)
.+.+++|..+.+.|+..+..|+++-+.+=.++=+-+..|-+.+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777777777777766666655555554433
No 60
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.65 E-value=1.5e+02 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhH
Q 020112 288 RVENLRGCFGVLRSGA 303 (331)
Q Consensus 288 ~v~el~~~~e~Le~gl 303 (331)
.++.++.++++||.-+
T Consensus 50 ~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 50 KAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 61
>PRK11637 AmiB activator; Provisional
Probab=23.50 E-value=7.3e+02 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHH
Q 020112 283 VGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEI 317 (331)
Q Consensus 283 ~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~l 317 (331)
..+...++.++..+..++..|+.....+....+.+
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555554444443
No 62
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.32 E-value=5.6e+02 Score=24.02 Aligned_cols=46 Identities=9% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhH
Q 020112 249 LYEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGA 303 (331)
Q Consensus 249 l~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gl 303 (331)
=+|++.++.-+..+...++.. .++.......+..+++.++.+++.|
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~---------~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDEL---------QKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777776655433 1122334444445555555444444
No 63
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.32 E-value=3.3e+02 Score=20.48 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=4.3
Q ss_pred HHHhhhHhhHHH
Q 020112 297 GVLRSGAENIVG 308 (331)
Q Consensus 297 e~Le~gle~le~ 308 (331)
+.+-..++++..
T Consensus 71 ~~~~~~v~~~g~ 82 (90)
T PF06103_consen 71 DPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 64
>PHA02675 ORF104 fusion protein; Provisional
Probab=22.95 E-value=3.5e+02 Score=20.73 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhh
Q 020112 281 NEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDF 327 (331)
Q Consensus 281 ~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~i 327 (331)
..+.+.+++-.|.+....+.++...+++.++.|=+++=.-|..+|..
T Consensus 31 ~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L 77 (90)
T PHA02675 31 SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKL 77 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888888888888888888888888888888888763
No 65
>PLN02372 violaxanthin de-epoxidase
Probab=22.49 E-value=5.5e+02 Score=25.74 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.0
Q ss_pred HHHH--HhhhHhhHHHHHhHHHHHHHHHHHHHhhhc
Q 020112 295 CFGV--LRSGAENIVGQLDDFFDEIVEGRKKLLDFC 328 (331)
Q Consensus 295 ~~e~--Le~gle~le~~v~~lFr~li~~R~~LL~il 328 (331)
.+.. |++|+..|+.+...+.+.+-+--+.+|+-+
T Consensus 402 ~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~ 437 (455)
T PLN02372 402 LFKRVALEEGLKELEQDEENFLKELSKEEKELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4444 899999999999999999988888888754
No 66
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.14 E-value=4.7e+02 Score=22.87 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
+.++.++.....|+.-...|+.++|.+-.
T Consensus 137 ~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 137 QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666666665543
No 67
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=21.87 E-value=4.5e+02 Score=22.07 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhh
Q 020112 225 QERVAAEINQMS 236 (331)
Q Consensus 225 q~~v~~e~~~~~ 236 (331)
|+||++|..+..
T Consensus 37 q~Rva~eL~~L~ 48 (142)
T PF07956_consen 37 QERVAEELKRLE 48 (142)
T ss_pred HHHHHHHHHHHH
Confidence 899998877644
No 68
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.78 E-value=5.4e+02 Score=27.07 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHH
Q 020112 248 LLYEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVE 319 (331)
Q Consensus 248 ~l~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~ 319 (331)
+.+++..++..+..+...+... .+++.........+++.+.++.++.-++.+..+++.+-..+.+
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~-------~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTI-------PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555544322 1123333444444444444444444444444444444333333
No 69
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=21.53 E-value=5.8e+02 Score=24.44 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=20.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 276 AVDWENEVGIRERVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 276 ~~~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
|.+....+..+..|+.|+.++-.-...++.+...++.+
T Consensus 125 g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kL 162 (312)
T PF04782_consen 125 GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKL 162 (312)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666555555555554444443
No 70
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.48 E-value=2.7e+02 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRK 322 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~ 322 (331)
.+++|-..+-.-...++.+..+++-|..++-.-+.
T Consensus 23 tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 23 TIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455555555555555555666666555544433
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.17 E-value=6.3e+02 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 020112 246 GVLLYEFRRSKMALDELRGE 265 (331)
Q Consensus 246 ~~~l~El~~v~~av~~L~~~ 265 (331)
..+..|++.+...++.|...
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776666543
No 72
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.58 E-value=4.8e+02 Score=21.32 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHh
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLL 325 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL 325 (331)
....++.++..++.|..+++.|..+|-+=|..+-+....|=
T Consensus 70 ~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~ 110 (132)
T PF10392_consen 70 LESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLE 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44577777777888888888888888888887777666553
No 73
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.45 E-value=3.5e+02 Score=23.02 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHH
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQLDDFFDEI 317 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v~~lFr~l 317 (331)
...++++++..+.++..++.++..+..+++.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kv 83 (151)
T PF14584_consen 52 FDQIDELKEELEELEKRIEELEEKLRNCVQKV 83 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 34666777777777777777877777776643
No 74
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.31 E-value=3.2e+02 Score=22.17 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHhhhc
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLLDFC 328 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL~il 328 (331)
..+..+++.++++.++..|+.++++.+.+-..+...+..|=.++
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777777766665444
No 75
>PHA01750 hypothetical protein
Probab=20.02 E-value=3.6e+02 Score=19.72 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHH
Q 020112 250 YEFRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGV 298 (331)
Q Consensus 250 ~El~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~ 298 (331)
+|+.++...+..++..+ +++.+.|.++++.++.
T Consensus 42 ~ELdNL~~ei~~~kikq----------------Dnl~~qv~eik~k~dk 74 (75)
T PHA01750 42 SELDNLKTEIEELKIKQ----------------DELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHhhcc
Confidence 67776665555544321 2355666666666543
Done!