Query 020112
Match_columns 331
No_of_seqs 112 out of 269
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 66.5 7.9 0.00027 22.2 3.4 23 291-313 5-27 (31)
2 2akf_A Coronin-1A; coiled coil 63.3 9.7 0.00033 22.2 3.4 19 285-303 11-29 (32)
3 2pnv_A Small conductance calci 60.0 18 0.0006 23.3 4.6 28 288-315 10-37 (43)
4 2yy0_A C-MYC-binding protein; 57.5 17 0.00059 24.3 4.5 34 278-311 17-50 (53)
5 3na7_A HP0958; flagellar bioge 56.7 63 0.0022 28.4 9.6 38 287-324 46-83 (256)
6 2akf_A Coronin-1A; coiled coil 50.5 27 0.00094 20.3 3.9 25 286-310 5-29 (32)
7 1kd8_B GABH BLL, GCN4 acid bas 42.4 25 0.00085 21.5 3.0 23 291-313 5-27 (36)
8 1p68_A De novo designed protei 40.4 67 0.0023 23.1 5.6 61 252-318 30-97 (102)
9 3nmd_A CGMP dependent protein 39.2 96 0.0033 22.1 6.2 26 288-313 41-66 (72)
10 1mof_A Moloney murine leukemia 39.1 45 0.0015 22.5 4.2 29 296-324 4-32 (55)
11 3mq7_A Bone marrow stromal ant 38.5 97 0.0033 24.1 6.6 33 286-318 70-102 (121)
12 2xz3_A Maltose ABC transporter 38.3 89 0.003 29.6 8.1 40 285-324 377-416 (463)
13 1m1j_C Fibrinogen gamma chain; 36.0 2.9E+02 0.0099 26.2 12.6 49 211-269 19-67 (409)
14 3ci9_A Heat shock factor-bindi 34.8 82 0.0028 20.6 4.9 18 291-308 28-45 (48)
15 1aq5_A Matrilin-1, CMP, cartil 34.5 63 0.0022 21.1 4.2 24 287-310 23-46 (47)
16 2pnv_A Small conductance calci 33.1 49 0.0017 21.1 3.5 27 285-311 14-40 (43)
17 1y4m_A HERV-FRD_6P24.1 proviru 32.8 22 0.00077 23.8 1.9 28 297-324 3-30 (53)
18 1pzq_A Erythronolide synthase; 30.0 89 0.003 20.4 4.4 38 285-322 10-49 (60)
19 3qne_A Seryl-tRNA synthetase, 28.8 1.1E+02 0.0039 29.7 7.0 33 282-314 73-105 (485)
20 2dq0_A Seryl-tRNA synthetase; 28.4 1.2E+02 0.0042 29.1 7.2 34 281-314 70-103 (455)
21 3c3f_A Alpha/beta peptide with 27.9 88 0.003 18.8 3.7 23 291-313 5-27 (34)
22 2wq1_A General control protein 27.0 65 0.0022 19.3 3.0 22 292-313 5-26 (33)
23 4aj5_1 SKA3, spindle and kinet 26.8 82 0.0028 23.9 4.4 9 117-125 73-81 (101)
24 4dnd_A Syntaxin-10, SYN10; str 26.2 2E+02 0.0067 22.7 6.8 29 284-312 64-92 (130)
25 1wt6_A Myotonin-protein kinase 25.9 1.9E+02 0.0065 21.0 8.6 30 223-262 14-43 (81)
26 1ses_A Seryl-tRNA synthetase; 25.1 1.6E+02 0.0056 27.8 7.3 35 280-314 64-98 (421)
27 3kpe_A Fusion glycoprotein F0; 24.5 1.6E+02 0.0054 19.5 6.0 30 285-314 16-45 (51)
28 2oxj_A Hybrid alpha/beta pepti 24.4 1.1E+02 0.0038 18.4 3.7 23 291-313 5-27 (34)
29 1go4_E MAD1 (mitotic arrest de 24.3 99 0.0034 23.4 4.4 33 280-312 12-44 (100)
30 1kd8_A GABH AIV, GCN4 acid bas 24.0 75 0.0025 19.4 2.9 18 296-313 10-27 (36)
31 3mq9_A Bone marrow stromal ant 21.8 3.2E+02 0.011 25.6 8.8 38 284-321 394-431 (471)
32 1t2k_D Cyclic-AMP-dependent tr 21.8 1.9E+02 0.0064 19.4 5.9 26 288-313 30-55 (61)
33 3m48_A General control protein 21.0 83 0.0028 18.8 2.7 19 295-313 8-26 (33)
34 2p32_A Heat shock 70 kDa prote 20.2 2.9E+02 0.0098 20.9 7.3 19 279-297 45-63 (120)
35 2yy0_A C-MYC-binding protein; 20.0 1.8E+02 0.0062 19.1 4.6 7 250-256 19-25 (53)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=66.53 E-value=7.9 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHH
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~l 313 (331)
.+.+.|.+|+..++.||+.++-+
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666555543
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.33 E-value=9.7 Score=22.23 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q 020112 285 IRERVENLRGCFGVLRSGA 303 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gl 303 (331)
++.-|++|+++++.|++.+
T Consensus 11 l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 11 LNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666666666655544
No 3
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=59.97 E-value=18 Score=23.28 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFD 315 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr 315 (331)
-+.++..+-+.||+.|..||.+++.+-.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555433
No 4
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.48 E-value=17 Score=24.33 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=24.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHh
Q 020112 278 DWENEVGIRERVENLRGCFGVLRSGAENIVGQLD 311 (331)
Q Consensus 278 ~~e~~~~~~~~v~el~~~~e~Le~gle~le~~v~ 311 (331)
+..+.+.++...++|+..++.|...++.+..+++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777888888877777777766654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.74 E-value=63 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
..+..++..++.++.-+..++..++.+-.++-+.+.-+
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.47 E-value=27 Score=20.31 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHH
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQL 310 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v 310 (331)
.+.+..|+..+.+|.+.+|.||..|
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888887777655
No 7
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.40 E-value=25 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHH
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~l 313 (331)
.|...++.|-..-..|+.+|..+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444445555555554
No 8
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=40.36 E-value=67 Score=23.11 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccchhhhhhHHHHHHHHHHHHHHHhhhH-------hhHHHHHhHHHHHHH
Q 020112 252 FRRSKMALDELRGELERKCGQGQMAVDWENEVGIRERVENLRGCFGVLRSGA-------ENIVGQLDDFFDEIV 318 (331)
Q Consensus 252 l~~v~~av~~L~~~~~~~~~~~~~~~~~e~~~~~~~~v~el~~~~e~Le~gl-------e~le~~v~~lFr~li 318 (331)
+..||.-+......|..+..+.+.| ..+++-+.|.++.+++|..-+ .-+|..+.++|+.+-
T Consensus 30 lhdvdnhlqnviedihdfmqgggsg------gklqemmkefqqvldelnnhlqggkhtvhhieqnikeifhhle 97 (102)
T 1p68_A 30 LHDVDNHLQNVIEDIHDFMQGGGSG------GKLQEMMKEFQQVLDELNNHLQGGKHTVHHIEQNIKEIFHHLE 97 (102)
T ss_dssp THHHHHHHHHHHHHHHTTTTTSSTT------THHHHTHHHHHHHHHHHHTTCCSCHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHHHHHHH
Confidence 5566666666655554444332222 346777888888888887655 357888888888764
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.19 E-value=96 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
.++++.+.+...+.-|..|..++|.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555543
No 10
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=39.12 E-value=45 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 296 FGVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 296 ~e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
++.+++.|..+.+++..+..-+.++|..|
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888999999999864
No 11
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.46 E-value=97 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHH
Q 020112 286 RERVENLRGCFGVLRSGAENIVGQLDDFFDEIV 318 (331)
Q Consensus 286 ~~~v~el~~~~e~Le~gle~le~~v~~lFr~li 318 (331)
...|++|+..+..|..-|++.+.+|+++.+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 567999999999999999999999999988764
No 12
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=38.33 E-value=89 Score=29.59 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
.+.-+++++.-++++++.|..|+++++.+-.-+.+.|-.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4456788999999999999999999999999999999764
No 13
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.96 E-value=2.9e+02 Score=26.19 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=31.7
Q ss_pred ccchhhHhhHHHHHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Q 020112 211 LCFGSAFMISTARLQERVAAEINQMSVSGCGRQQQGVLLYEFRRSKMALDELRGELERK 269 (331)
Q Consensus 211 ~~~~~~~~~~l~~Lq~~v~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L~~~~~~~ 269 (331)
.|.+......|.+-+..|...+...+. .++|+++.-..+..|...++..
T Consensus 19 CPT~C~i~d~L~k~e~~V~~~l~~LE~----------~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 19 CPTTCGIADFFNKYRLTTDGELLEIEG----------LLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHhcchhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666766667666555442 3678888877787777665543
No 14
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=34.82 E-value=82 Score=20.57 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhHhhHHH
Q 020112 291 NLRGCFGVLRSGAENIVG 308 (331)
Q Consensus 291 el~~~~e~Le~gle~le~ 308 (331)
++-.+++.+...||+||+
T Consensus 28 ~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 28 QIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhHHHHHHh
Confidence 333444444555555444
No 15
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=34.54 E-value=63 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHH
Q 020112 287 ERVENLRGCFGVLRSGAENIVGQL 310 (331)
Q Consensus 287 ~~v~el~~~~e~Le~gle~le~~v 310 (331)
..++.|.++++.+..+++.||+++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666677777777776654
No 16
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.11 E-value=49 Score=21.14 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHh
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLD 311 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~ 311 (331)
+..+=++|.+++..||..++.|.+++.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777766654
No 17
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=32.81 E-value=22 Score=23.83 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHhhhHhhHHHHHhHHHHHHHHHHHHH
Q 020112 297 GVLRSGAENIVGQLDDFFDEIVEGRKKL 324 (331)
Q Consensus 297 e~Le~gle~le~~v~~lFr~li~~R~~L 324 (331)
+.++++|..+.++++.+...+.+.|..|
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888899999999999864
No 18
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=30.00 E-value=89 Score=20.39 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHH--hhhHhhHHHHHhHHHHHHHHHHH
Q 020112 285 IRERVENLRGCFGVL--RSGAENIVGQLDDFFDEIVEGRK 322 (331)
Q Consensus 285 ~~~~v~el~~~~e~L--e~gle~le~~v~~lFr~li~~R~ 322 (331)
+..+.+||.+.+++| ++|-+++...++.+.|+--.-|.
T Consensus 10 igdrldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 10 IGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp THHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 456888888888887 57888999999999888765553
No 19
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.81 E-value=1.1e+02 Score=29.72 Aligned_cols=33 Identities=9% Similarity=-0.048 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
.+.+...+.+|+..+..|+..+..++.+++.+.
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888877654
No 20
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.41 E-value=1.2e+02 Score=29.11 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 281 NEVGIRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 281 ~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
+.+.+...+.+++..+..++..+..++++++.+.
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888877654
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.87 E-value=88 Score=18.79 Aligned_cols=23 Identities=4% Similarity=0.003 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHH
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~l 313 (331)
.|..+++.|-..-..|+.+|+.+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444444444555555555554
No 22
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=26.97 E-value=65 Score=19.25 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhHhhHHHHHhHH
Q 020112 292 LRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 292 l~~~~e~Le~gle~le~~v~~l 313 (331)
|..+++.|-.....++.+|..+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444555555443
No 23
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.83 E-value=82 Score=23.88 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 020112 117 RQVIRAISV 125 (331)
Q Consensus 117 ~~~~ra~k~ 125 (331)
..+++|.+.
T Consensus 73 ~~FIKa~kv 81 (101)
T 4aj5_1 73 IDFIKATKV 81 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 24
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.15 E-value=2e+02 Score=22.67 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDD 312 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~ 312 (331)
+....-.||+..|+.++.-|++|++-|.=
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777666653
No 25
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.85 E-value=1.9e+02 Score=20.96 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhccCCCCcccchHHHHHHHHHHHHHHH
Q 020112 223 RLQERVAAEINQMSVSGCGRQQQGVLLYEFRRSKMALDEL 262 (331)
Q Consensus 223 ~Lq~~v~~e~~~~~~~~~~~~~~~~~l~El~~v~~av~~L 262 (331)
.||..+-.||..+. ..-.|+.+|..+...+
T Consensus 14 eLQSALeaEIqAKQ----------~i~EELs~vr~~ni~~ 43 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ----------SLSREMEAIRTDNQNF 43 (81)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 67888877877643 3457888877655433
No 26
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.06 E-value=1.6e+02 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 280 ENEVGIRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 280 e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
++.+.+...+.+++..+..++..+..++.+++.+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777776543
No 27
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=24.45 E-value=1.6e+02 Score=19.49 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 285 IRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 285 ~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
..++|.+|...+..+-..++.+..++++.+
T Consensus 16 TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i 45 (51)
T 3kpe_A 16 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQL 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888888887754
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.39 E-value=1.1e+02 Score=18.38 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhHhhHHHHHhHH
Q 020112 291 NLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 291 el~~~~e~Le~gle~le~~v~~l 313 (331)
.|..+++.|-..=++|+.+|+.+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444444455555555555554
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.27 E-value=99 Score=23.45 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhHhhHHHHHhH
Q 020112 280 ENEVGIRERVENLRGCFGVLRSGAENIVGQLDD 312 (331)
Q Consensus 280 e~~~~~~~~v~el~~~~e~Le~gle~le~~v~~ 312 (331)
+....++..++.|..-.+.|+..++.||.+++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777777777777776654
No 30
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.95 E-value=75 Score=19.37 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=7.3
Q ss_pred HHHHhhhHhhHHHHHhHH
Q 020112 296 FGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 296 ~e~Le~gle~le~~v~~l 313 (331)
++.|...-..|+.+|..|
T Consensus 10 VEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 10 VEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333333344444444443
No 31
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.84 E-value=3.2e+02 Score=25.64 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHH
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGR 321 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R 321 (331)
+.+...+.|++.+...++++..+|.|..-+=|.++.--
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 45566777777888888888888877777777666543
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.79 E-value=1.9e+02 Score=19.36 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~l 313 (331)
.++.|...-..|..-+..|..++..|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.97 E-value=83 Score=18.84 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=7.9
Q ss_pred HHHHHhhhHhhHHHHHhHH
Q 020112 295 CFGVLRSGAENIVGQLDDF 313 (331)
Q Consensus 295 ~~e~Le~gle~le~~v~~l 313 (331)
+++.|-..-.+|+.+|..+
T Consensus 8 kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3333344444444444443
No 34
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.15 E-value=2.9e+02 Score=20.90 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 020112 279 WENEVGIRERVENLRGCFG 297 (331)
Q Consensus 279 ~e~~~~~~~~v~el~~~~e 297 (331)
.++...+...+++++.+++
T Consensus 45 ~eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 45 PEDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455566666665554
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.03 E-value=1.8e+02 Score=19.15 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020112 250 YEFRRSK 256 (331)
Q Consensus 250 ~El~~v~ 256 (331)
.|++.+.
T Consensus 19 ~d~eaLk 25 (53)
T 2yy0_A 19 PEIELLR 25 (53)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3444333
Done!