Query 020112
Match_columns 331
No_of_seqs 112 out of 269
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 11:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020112.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020112hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5ta1 a.4.5.54 (A:20-164) Va 34.4 16 0.0012 27.9 3.6 53 67-126 70-122 (145)
2 d1seta1 a.2.7.1 (A:1-110) Sery 28.5 87 0.0063 21.7 8.0 33 282-314 66-98 (110)
3 d2axti1 f.23.37.1 (I:1-35) Pho 27.6 34 0.0025 19.2 3.3 20 179-198 12-31 (35)
4 d1wu9a1 a.245.1.1 (A:191-249) 20.3 67 0.0049 20.3 4.2 32 288-319 2-33 (59)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 20.2 1E+02 0.0075 21.2 5.9 42 284-325 62-103 (107)
6 d1zl8a1 a.194.1.1 (A:4-53) Lin 20.0 21 0.0015 21.9 1.4 12 79-90 37-48 (50)
7 d1wa8b1 a.25.3.1 (B:602-695) E 17.4 81 0.0059 21.1 4.6 7 253-259 8-14 (94)
8 d1y74a1 a.194.1.1 (A:17-73) Li 17.3 31 0.0022 21.6 1.8 15 79-93 38-52 (57)
9 d2j7za1 d.9.1.1 (A:1-67) Strom 17.2 24 0.0018 22.7 1.3 13 63-75 54-66 (67)
10 d1ez3a_ a.47.2.1 (A:) Syntaxin 17.1 1.6E+02 0.012 20.5 8.4 48 282-329 47-99 (124)
No 1
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.43 E-value=16 Score=27.88 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhHhHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHH
Q 020112 67 LDEYMDESSKLWEACHVIKSGISGMETYCSAGFNITSSLDNHRHLTPQLSRQVIRAISVC 126 (331)
Q Consensus 67 veeyLd~S~klLDvCna~~d~i~~~~~~~~~lq~a~s~l~~~~~~~~~~~~~~~ra~k~~ 126 (331)
=|=|.+=++++.|||-+.|+. ..+...+....+.+.++...+. .-+.||++.+
T Consensus 70 gDFYyEL~VqIvEvC~~tr~~----NGGli~l~el~~~~~~~~~is~---dDi~rAi~~L 122 (145)
T d1u5ta1 70 NDFYYEVCLKVIEICRQTKDM----NGGVISFQELEKVHFRKLNVGL---DDLEKSIDML 122 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----SSSCEEHHHHHHTTTTTTTCCH---HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhc----CCCEeEHHHHHHHHHhhcCCCH---HHHHHHHHhh
Confidence 467899999999999999863 1112222222233333334554 4467777654
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=28.52 E-value=87 Score=21.68 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHH
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFF 314 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lF 314 (331)
.+.+...+.+++..+..++..+..++.+++.+.
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777776666553
No 3
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.61 E-value=34 Score=19.15 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhccCCCCc
Q 020112 179 SSLLLMILLYGVVYCWPESN 198 (331)
Q Consensus 179 t~~v~~vl~~~~l~~~p~~~ 198 (331)
-.|+.+.+.+|+++..|...
T Consensus 12 V~fFv~lFiFGFLSnDP~Rn 31 (35)
T d2axti1 12 VTFFVLLFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHHHHHHHTTCTTCS
T ss_pred HHHHHHHHHHhhccCCCCCC
Confidence 34556678888998888763
No 4
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.30 E-value=67 Score=20.28 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHH
Q 020112 288 RVENLRGCFGVLRSGAENIVGQLDDFFDEIVE 319 (331)
Q Consensus 288 ~v~el~~~~e~Le~gle~le~~v~~lFr~li~ 319 (331)
.+.+|...+..|+..++.+|+.=|-.|..|..
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRd 33 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRN 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777888888887777777654
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.16 E-value=1e+02 Score=21.22 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHHHHHHHHHHHh
Q 020112 284 GIRERVENLRGCFGVLRSGAENIVGQLDDFFDEIVEGRKKLL 325 (331)
Q Consensus 284 ~~~~~v~el~~~~e~Le~gle~le~~v~~lFr~li~~R~~LL 325 (331)
...+...+|...++.++..|+.++.++..+=..+-.-+..+=
T Consensus 62 ~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888888887777777777766665543
No 6
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=20.03 E-value=21 Score=21.87 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhh
Q 020112 79 EACHVIKSGISG 90 (331)
Q Consensus 79 DvCna~~d~i~~ 90 (331)
|+||++|..-.+
T Consensus 37 dF~~avREVYe~ 48 (50)
T d1zl8a1 37 EFFGAVREVYET 48 (50)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 778887775544
No 7
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.43 E-value=81 Score=21.06 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 020112 253 RRSKMAL 259 (331)
Q Consensus 253 ~~v~~av 259 (331)
..++.+.
T Consensus 8 ~~l~~~a 14 (94)
T d1wa8b1 8 AGIEAAA 14 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 8
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.32 E-value=31 Score=21.64 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhHh
Q 020112 79 EACHVIKSGISGMET 93 (331)
Q Consensus 79 DvCna~~d~i~~~~~ 93 (331)
|+|+++|..-.++-+
T Consensus 38 dF~~avREVYehvye 52 (57)
T d1y74a1 38 RFCSAIREVYEQLYD 52 (57)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999988777643
No 9
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.18 E-value=24 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=10.6
Q ss_pred ccchHHHHhhhhh
Q 020112 63 GEKWLDEYMDESS 75 (331)
Q Consensus 63 ~~kwveeyLd~S~ 75 (331)
.-||+-+||+.++
T Consensus 54 k~kWiQqYL~kAl 66 (67)
T d2j7za1 54 KLKWIQEYLEKAL 66 (67)
T ss_dssp TCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhc
Confidence 4699999998764
No 10
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.08 E-value=1.6e+02 Score=20.48 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhHhhHHHHHhHHHH-----HHHHHHHHHhhhcc
Q 020112 282 EVGIRERVENLRGCFGVLRSGAENIVGQLDDFFD-----EIVEGRKKLLDFCS 329 (331)
Q Consensus 282 ~~~~~~~v~el~~~~e~Le~gle~le~~v~~lFr-----~li~~R~~LL~ils 329 (331)
...+...+.+++.....+...|+.|+..++.... -..+.|....+.|+
T Consensus 47 ~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~ 99 (124)
T d1ez3a_ 47 KEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLS 99 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 3456667777777777777777777766654321 23445555555553
Done!