BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020113
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 28/249 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ----P 57
KA+IL GG GTRL T+ PKP+V+ KP++ H ++ G+ + ++ Y+
Sbjct: 4 KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 58 EVMLNXXXXXXXXXXXXXTCSQET-----EPLG-----------TAGPLALARDKLIDDS 101
E N E EP T G L + + DD
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD- 122
Query: 102 GEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVD-EPSKYGVVVMEETTGKVEKFVEK 160
E F D +++ +K I+FH+ G +A++ P ++G + ++ G+V F EK
Sbjct: 123 -EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ--AGQVRSFQEK 179
Query: 161 PKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFW--MDIG 218
PK G IN G ++LNPSV+D I+ T+ E+E +A + +L A PGFW MD
Sbjct: 180 PKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTL 238
Query: 219 QPKDYITGL 227
+ K Y+ GL
Sbjct: 239 RDKVYLEGL 247
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 41/333 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA IL G G RL P+T + PK V +KP+I +QIE L+ G+ ++ + ++ + +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALAR--DKLIDDSGEPFFVLNSDVISEYPL 118
+Q+ + GT + A+ D+ + G+ FF ++ + L
Sbjct: 61 FE------KKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITL 114
Query: 119 KQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
K+ + V P YGV+V++ + K +EKP+ N INAGIY LN
Sbjct: 115 KE--------NAIIGVKVSNPKDYGVLVLDNQN-NLSKIIEKPEIPPSNLINAGIYKLNS 165
Query: 179 SV---LDRIELKPTSIEKEVFPEI---AAENKLFAMVLPGFWMDIGQPKDYITGLRLYLD 232
+ LD+I + E E+ I A ++++ + G+WMDIG+P + I + LD
Sbjct: 166 DIFTYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD 224
Query: 233 FLQKNSS-SKLATGSNIIGNVLVHEGAKIGDGCLI-GPDKHACISSSIIGWHSTVGRWAR 290
L + + + I G V++ E A+I G I GP IG S +G +
Sbjct: 225 NLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGP--------VYIGKGSEIGPNSY 276
Query: 291 VENMTIL------GEDVHVADEVYSNGAVVLPH 317
+ TIL G V V + V G+ + PH
Sbjct: 277 LRPYTILVEKNKIGASVEVKESVIMEGSKI-PH 308
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P GTA + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-AGTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
SV++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE 83
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE 83
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 11/225 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG G+RL P+T K L+ PMI H + LK +T++++ +
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ T + + G A L L D + +D +L ++ S+
Sbjct: 85 VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRPY 142
Query: 121 MIEFHRGRGGEASIM--VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ EF + G ++ VD+P ++GV ++ K+ + EKPK + GIYL +
Sbjct: 143 VEEFTNQKEGAKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIYLYDS 200
Query: 179 SVLDRI-ELKPTSIEKEVFPEIA----AENKLFAMVLPGFWMDIG 218
V I ELKP++ + +I L + G+W D G
Sbjct: 201 KVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-KGTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
SV++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 18/263 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK ++L GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ + +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ + EP G A + +D I DS + VL +V + +
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKD-FIGDS-KVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++ A I V +P +GVV ++ G+V EKP N + G+Y +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEF-DSEGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 178 PSVL---------DRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLR 228
V+ DR EL+ TS+ +E +L + W+D G D +
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTGT-HDGLLEAS 237
Query: 229 LYLDFLQKNSSSKLATGSNIIGN 251
+++ +QK +A I N
Sbjct: 238 SFIETIQKRQGFYIACLEEIAYN 260
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-KGTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
SV++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-KGTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
SV++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 105/236 (44%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G++ +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-AGTAVSLEEKPLQPKSNYAVTGLFFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
SV++ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKP-SARGEL--EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDK-NGTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTSIEKEVFPEIAAENKLF--------AMVLPGF-WMDIGQPKDYI 224
V+ + LKP S E+ EI N+++ AM+ G+ W+D G + I
Sbjct: 182 DVVQMAKNLKP-SARGEL--EITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLL-N 177
+E + A++ V++P +YGVV ++ G EKP N G+Y N
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDK-NGTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 178 PSVLDRIELKPTS---IEKEVFPEIAAENKLFAMVLPG---FWMDIGQPKDYI 224
VL LKP++ +E I E ++ L G W+D G + I
Sbjct: 182 DVVLMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLI 234
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 14 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ + P G A + + +D VL ++ + ++
Sbjct: 74 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 131
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ R AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 132 LGSASQRQTGASVFAYHVLDPERYGVVEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQ 190
Query: 179 SVLD-RIELKPT 189
V+D +LKP+
Sbjct: 191 QVVDIARDLKPS 202
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 13 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ + P G A + + +D VL ++ + ++
Sbjct: 73 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 130
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ R AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 131 LGSASQRQTGASVFAYHVLDPERYGVVEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQ 189
Query: 179 SVLD-RIELKPT 189
V+D +LKP+
Sbjct: 190 QVVDIARDLKPS 201
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQ-AGTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTS 190
SV++ + LKP++
Sbjct: 182 SVVEMAKNLKPSA 194
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ + P G A + + +D VL ++ + ++
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ R AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 SVLD-RIELKPT 189
V+D +LKP+
Sbjct: 181 QVVDIARDLKPS 192
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDK-NGTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 SVLDRIE-LKPTS---IEKEVFPEIAAENKLFAMVLPG---FWMDIGQPKDYI 224
V+ + LKP++ +E I E ++ L G W+D G + I
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLI 234
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 15/234 (6%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKL-IDDSGEPFFVLNSDVISEYPLKQ 120
+ P G A + + + DD VL ++ + L +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA---LVLGDNIFYGHDLPK 121
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
++E + A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 122 LMEAAVNKESGATVFAYHVNDPERYGVVEFDK-NGTAISLEEKPLEPKSNYAVTGLYFYD 180
Query: 178 PSVLDRIE-LKPTS---IEKEVFPEIAAENKLFAMVLPG---FWMDIGQPKDYI 224
V+ + LKP++ +E I E ++ L G W+D G + I
Sbjct: 181 NDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTGTHQSLI 234
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 22/256 (8%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T V K L+ +KP I + + L G+ E+++ + +
Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEP-FFVLNSDVISEYPLKQ 120
+++ P G A + L +GEP VL ++
Sbjct: 65 QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSP 121
Query: 121 MIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLN 177
+ R A++ V +P ++GVV ++ + EKPK N G+Y +
Sbjct: 122 KLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYD 180
Query: 178 PSVL---------DRIELKPTSIEKEVFPEIAAENKLFAMVLPGF-WMDIGQPKDYITGL 227
V+ +R EL+ TSI + + A N ++ GF W+D G D +
Sbjct: 181 SKVVEYAKQVKPSERGELEITSINQXY---LEAGNLTVELLGRGFAWLDTGT-HDSLIEA 236
Query: 228 RLYLDFLQKNSSSKLA 243
++ ++K K+A
Sbjct: 237 STFVQTVEKRQGFKIA 252
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 7/192 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KP I + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 62 NXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ + P G A + + +D VL ++ + ++
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ R AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 SVLD-RIELKPT 189
V+D +LKP+
Sbjct: 181 QVVDIARDLKPS 192
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 137/354 (38%), Gaps = 58/354 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + E++
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL 62
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
+ E LGT + A DD E +L DV IS L
Sbjct: 63 ------KKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 114
Query: 119 KQMIEFH-RGRGGEASIMVDEPSKYGVVVME--ETTGKVEKFVEKPKNFVGNKINAGIYL 175
++++ G G ++ +D PS YG +V E + G VE N+IN GI +
Sbjct: 115 QRLLAAKPEGGIGLLTVKLDNPSGYGRIVRENGDVVGIVEHKDASDAQREINEINTGILV 174
Query: 176 LNP-------SVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDI----------- 217
N S+LD + ++ A+ K A V P ++
Sbjct: 175 ANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSA 234
Query: 218 -------GQPKDYITGLRLYLDFLQKNSSSKLATGSNII--------GNVLVHEGAKIGD 262
Q + + + LD + + +L G +I G+V++ + +IG
Sbjct: 235 LERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGT 294
Query: 263 G-----CLIGPDK----HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307
G C+IG D + + + + + TVG +AR+ L E HV + V
Sbjct: 295 GCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFV 348
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 143/354 (40%), Gaps = 58/354 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR+ +PK L A KPM+ H I+ +G + L + ++M
Sbjct: 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPL 118
+TE LGTA + A D+ E VL D +I++ L
Sbjct: 63 ------RTHLANEQVNWVLQTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 KQMIEFHRGRG-GEASIMVDEPSKYG---------VVVMEETTGKVEKFVEKPKNF---- 164
+++IE G ++ +D P+ YG V ++E+ E+ K N
Sbjct: 115 EKLIEAKPENGIALLTVNLDNPTGYGRIIRENGNVVAIVEQKDANAEQLNIKEVNTGVMV 174
Query: 165 ------------VGNKINAGIYLLNP--SVLDRIELKPTSIEKEVFPEI-AAENKLFAMV 209
VGN G Y L ++ ++ + +++ E+ A N+L
Sbjct: 175 SDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAA 234
Query: 210 LPGFWMDIGQPKDYITGLRLY----LDF---LQKNSSSKLATGSNIIGNVLVHEGAKIGD 262
L ++ + K + G+ +Y D L+ ++ I GNV + + KIG
Sbjct: 235 LERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGT 294
Query: 263 GC-----LIGPD----KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307
GC +IG D ++ + SI+G + +G ++R+ L + HV + V
Sbjct: 295 GCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFV 348
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 136/351 (38%), Gaps = 58/351 (16%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNX 63
+IL G GTR+ +PK L A KPM+ H I+A +G V L + E++
Sbjct: 12 VILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL--- 65
Query: 64 XXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQM 121
+ E LGT + A DD E +L DV IS L+++
Sbjct: 66 ---KKTLADPSLNWVLQAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRL 120
Query: 122 IEFH-RGRGGEASIMVDEPSKYGVVVME--ETTGKVEKFVEKPKNFVGNKINAGIYLLNP 178
+ G G ++ +D PS YG +V E + G VE N+IN GI + N
Sbjct: 121 LAAKPEGGIGLLTVKLDNPSGYGRIVRENGDVVGIVEHKDASDAQREINEINTGILVANG 180
Query: 179 -------SVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDI-------------- 217
S+LD + ++ A+ K A V P ++
Sbjct: 181 RDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALER 240
Query: 218 ----GQPKDYITGLRLYLDFLQKNSSSKLATGSNII--------GNVLVHEGAKIGDG-- 263
Q + + + LD + + +L G +I G+V++ + +IG G
Sbjct: 241 VFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCV 300
Query: 264 ---CLIGPDK----HACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307
C+IG D + + + + + TVG +AR+ L E HV + V
Sbjct: 301 LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFV 351
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 38/217 (17%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLA--------- 52
KA+ V G GTR P T ++PK ++ ++P+I + ++ G+ +++
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 53 ----INYQPEVMLNXXXXXXXXXXXXX------TCSQETEPLGTAGPLALARDKLIDDSG 102
I Y+ E + ++ EP+G + ARD + D
Sbjct: 76 DHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD--- 132
Query: 103 EPFFV-LNSDVISEYP--LKQMIEFHRGRGGE----ASIMVDEPSKYGVV-------VME 148
EPF V L D + P LKQM++ + GG + D+ +YG++ V+
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGVLT 192
Query: 149 ETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIE 185
E G VEK P N G Y+L P V+ +E
Sbjct: 193 EVKGLVEK--PAPGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 44/269 (16%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAI-------- 53
K L G+GTR P+T ++PK ++ +KP+I + +E G V+AI
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCE--VMAIVTGRNKRS 61
Query: 54 -------NYQPEVML---NXXXXXXXXXXXXXTCS---QETEPLGTAGPLALARDKLIDD 100
+Y+ E + N C + + G L + LI +
Sbjct: 62 LEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN 121
Query: 101 SGEPFFVLNSD---VISEYP--LKQMIEFHRGRGGE----ASIMVDEPSKYGVVV---ME 148
EPF V+ +D + ++P LKQM ++ + ++E SKYGV+ +E
Sbjct: 122 --EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLE 179
Query: 149 ETTGKVEKFVEKP--KNFVGNKINAGIYLLNPSVLDRI-ELKPTSIEK----EVFPEIAA 201
E +++ VEKP ++ N G Y+L P + + + E KP + + A
Sbjct: 180 EGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAK 239
Query: 202 ENKLFAMVLPGFWMDIGQPKDYITGLRLY 230
++ A G D G + YI Y
Sbjct: 240 RKRIIAYQFKGKRYDCGSVEGYIEASNAY 268
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNX 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 12 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 68
Query: 64 XXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQM 121
+ + PLGT + L DD V + D ++ L +
Sbjct: 69 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 128
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVM---EETTGKVEKFVEKPKNFVGNKINAGIYL 175
I HR +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 129 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 188
Query: 176 LNPSVLDRI--ELKPTSIEKEVF 196
+ + L L + ++E++
Sbjct: 189 FDIAALRSALSRLSSNNAQQELY 211
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVL 51
KA+I V G GTR+ P T ++PK ++ +KP+I + + A G+TE+VL
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVL 59
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNX 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 16 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 72
Query: 64 XXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQM 121
+ + PLGT + L DD V + D ++ L +
Sbjct: 73 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVM---EETTGKVEKFVEKPKNFVGNKINAGIYL 175
I HR +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 192
Query: 176 LNPSVLDRI--ELKPTSIEKEVF 196
+ + L L + ++E++
Sbjct: 193 FDIAALRSALSRLSSNNAQQELY 215
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNX 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 10 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64 XXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQM 121
+ + PLGT + L DD V + D ++ L +
Sbjct: 67 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVM---EETTGKVEKFVEKPKNFVGNKINAGIYL 175
I HR +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 186
Query: 176 LNPSVLDRI--ELKPTSIEKEVF 196
+ + L L + ++E++
Sbjct: 187 FDIAALRSALSRLSSNNAQQELY 209
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNX 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 18 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 74
Query: 64 XXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQM 121
+ + PLGT + L DD V + D ++ L +
Sbjct: 75 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 134
Query: 122 IEFHRGRGGEASIM---VDEPSKYGVVVM---EETTGKVEKFVEKPKNFVGNKINAGIYL 175
I HR +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 135 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 194
Query: 176 LNPSVLDRI--ELKPTSIEKEVF 196
+ + L L + ++E++
Sbjct: 195 FDIAALRSALSRLSSNNAQQELY 217
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 35/342 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L A M+ H ++ A+ + V + ++ E++
Sbjct: 5 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 59
Query: 63 XXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVL-NSDVISEYPLKQM 121
++E LGT + + L SG + ++ +I+ LK +
Sbjct: 60 -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 114
Query: 122 IEFHRGRGGEASIMV---DEPSKYGVVVMEETTGKVEKFVEKPKNFVGNK----INAGIY 174
I+FH A+I+ D P YG +V + +V + VE+ K IN G Y
Sbjct: 115 IDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTY 173
Query: 175 LLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 234
+ + L LK + A+ + + + G + + G+ T L+ + + L
Sbjct: 174 VFDNERLFE-ALKNINTNN-------AQGEYYITDVIGIFRETGEKVGAYT-LKDFDESL 224
Query: 235 QKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGP-----DKHACISSSI-IGWHSTVGRW 288
N LAT +++ + H+ + + P D I+S + I + T+
Sbjct: 225 GVNDRVALATAESVMRRRINHK-HMVNGVSFVNPEATYIDIDVEIASEVQIEANVTLKGQ 283
Query: 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIV 330
++ T+L +V D GAV+ +SS+ + IV
Sbjct: 284 TKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIV 325
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 50/244 (20%)
Query: 105 FFVLNSDVISEYPLKQMIEFHRGRGGE---ASIMVDE--PSKYGVVVMEETTGKVEKFVE 159
+ +L D + ++ I+ HR + A++ +DE + +G++ ++E G++ +F E
Sbjct: 139 YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAE 197
Query: 160 KPKNFVGNKINA------------------------GIYLLNPSV-LDRIELK---PTSI 191
KP+ G ++ A GIY+++ V L+ + K
Sbjct: 198 KPQ---GEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDF 254
Query: 192 EKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITG-----LRLYLDFLQKNSSSKLATG 245
EV P + ++ A + G+W DIG + + + DF + S+ + T
Sbjct: 255 GSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 314
Query: 246 SNIIGNVLVHEG----AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDV 301
+ + + + IG+GC+I K+ I S++G S + A +E+ ++G D
Sbjct: 315 PRYLPPSKMLDADVTDSVIGEGCVI---KNCKIHHSVVGLRSCISEGAIIEDSLLMGADY 371
Query: 302 HVAD 305
+ D
Sbjct: 372 YETD 375
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 97/264 (36%), Gaps = 45/264 (17%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQI--EALKAVGVTEVVLAINYQPEVM 60
A +L GG G+RL+ LT KP V F K I+ AL + G+ + +A Y+ +
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNS-GIRRIGVATQYKAHSL 73
Query: 61 LNXXXXXXXXXXXXXTCSQETEPL-----------GTAGPLALARDKLIDDSGEPFFVLN 109
+ S + P GTA + D + + E +L
Sbjct: 74 IRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILA 133
Query: 110 SDVISEYPLKQMIEFHRGRGGEASIMV-----DEPSKYGVVVMEETTGKVEKFVEKPKN- 163
D I + + ++ H G + +I E + +GV + E ++ F+EKP +
Sbjct: 134 GDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKD-EIIDFIEKPADP 192
Query: 164 --FVGNK----INAGIYLLNPSVLD----RIELKPTSIE---KEVFPEIAAENKLFAMVL 210
GN+ + GIY+ + L R PTS K++ P I K A
Sbjct: 193 PGIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRF 252
Query: 211 PG-----------FWMDIGQPKDY 223
+W D+G Y
Sbjct: 253 ADSCVRSDFEHEPYWRDVGTIDAY 276
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTRL VPKPLV +IL ++ L +++A Y ++
Sbjct: 19 MKAVILAAGLGTRLG----GVPKPLVRVGGCEIILRTMKLLSPHVSEFIIVASRYADDI- 73
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ G L +A++ + D + V S+ +++
Sbjct: 74 ---DAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVED---RFILTMGDHVYSQQFIEK 127
Query: 121 MIEFHRGRGGEASIMVDEPSKYGVVVMEETT-----GKVEKFVEKPKNFVGNKINAGIYL 175
+ RG G ++ D ++ V + E T G+V K + + F + ++ G ++
Sbjct: 128 AV---RGEG----VIADREPRF-VDIGEATKIRVEDGRVAKIGKDLREF--DCVDTGFFV 177
Query: 176 LNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKD 222
L+ S+ + E K E+ EI +L + G WMD+ +D
Sbjct: 178 LDDSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKED 224
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLVD KPMI+H +E + G +++A +++
Sbjct: 35 KPLVDINGKPMIVHVLERARESGAERIIVATDHE 68
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 233 FLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVE 292
F+ KNS K+ GS + NV ++ +IG CLI + + G+ + G W ++
Sbjct: 141 FVGKNS--KIGAGSRLWANVTIYHEIQIGQNCLI--QSGTVVGADGFGYANDRGNWVKIP 196
Query: 293 NM--TILGEDVHVA-----------DEVYSNGAVVLPHKEIKSSIV 325
+ I+G+ V + D + NG ++ +I ++V
Sbjct: 197 QIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVV 242
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEAL 41
A IL GG GTR+ +S+PK + KP+I+H +E
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKF 42
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLVD KP I+H +E + G +++A +++
Sbjct: 19 KPLVDINGKPXIVHVLERARESGAERIIVATDHE 52
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLAIN 54
KPL+D KPMI H E AL+ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATD 51
>pdb|2X5S|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5S|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5Z|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X5Z|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X60|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X60|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X65|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate.
pdb|2X65|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate
Length = 336
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1 MKALILVGGFGTRLRPL-TLSVPKPLVD-FANKPMILHQIEAL 41
MKALIL GG G R PL T PK + F NK ++ E +
Sbjct: 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERV 44
>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From
Yersinia Pestis
Length = 253
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KPL D A KP ++H E A G V++A ++ P+V+
Sbjct: 22 KPLADIAGKPXVVHVXERALASGADRVIVATDH-PDVV 58
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEAL 41
A IL GG GTR+ L PK ++ ++P+++H IE
Sbjct: 5 AGILAGGTGTRMGISNL--PKQFLELGDRPILIHTIEKF 41
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 107 VLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVG 166
+L D+ + + F RG+G I+V+EPS V+ ++ TTG++ K + KN +G
Sbjct: 1 MLRKDIGIDLGTANTLVFLRGKG----IVVNEPS---VIAIDSTTGEILKVGLEAKNMIG 53
Query: 167 NKINAGIYLLNP 178
K A I + P
Sbjct: 54 -KTPATIKAIRP 64
>pdb|1VHM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VHM|B Chain B, Crystal Structure Of An Hypothetical Protein
Length = 195
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 208 MVLPGFWMDIGQPKDYITG-LRLYLDF------LQKNSSSKLATGSNIIGNVLVHE---- 256
++L G+ + + QP DYI Y D L +S LAT +N + L++E
Sbjct: 4 LILIGWQIQVRQPSDYIMNKTEFYADLNRDFNALMAGETSFLATLANT--SALLYERLTD 61
Query: 257 ----GAKI--GDGCLIGP--DKHAC----ISSSIIGWHSTVGRWARVENMTILGEDVHVA 304
G + D ++GP K AC + + G + R+E++ + D H+A
Sbjct: 62 INWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVF--DGHIA 119
Query: 305 DEVYSNGAVVLP 316
+ SN +VLP
Sbjct: 120 CDAASNSEIVLP 131
>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate
Cytidylyltransferase (Kdsb) From Coxiella Burnetii
Length = 256
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAIN 54
K LVD A KP I H E+ G EVV+A +
Sbjct: 26 KALVDIAGKPXIQHVYESAIKSGAEEVVIATD 57
>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|B Chain B, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU8|C Chain C, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I)
pdb|2IU9|A Chain A, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|B Chain B, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IU9|C Chain C, Chlamydia Trachomatis Lpxd With 100mm Udpglcnac (complex
Ii)
pdb|2IUA|A Chain A, C. Trachomatis Lpxd
pdb|2IUA|B Chain B, C. Trachomatis Lpxd
pdb|2IUA|C Chain C, C. Trachomatis Lpxd
Length = 374
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 253 LVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307
+V + A +G C IG S S+IG +STVG + + ++ E V + V
Sbjct: 150 VVCQHAHVGSACHIG-------SGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRV 197
>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase
pdb|1VIC|B Chain B, Crystal Structure Of Cmp-kdo Synthetase
Length = 262
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAIN 54
KPL D KPMI H E G + V++A +
Sbjct: 19 KPLADIKGKPMIQHVFEKALQSGASRVIIATD 50
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
Length = 223
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTE-VVLAI 53
A++ G G RLR PK V P++ H + L+A GV + +V+A+
Sbjct: 5 AVVPAAGSGERLR---AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV 53
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 117/326 (35%), Gaps = 70/326 (21%)
Query: 3 ALILVGGFGTRLRPLTL-SVPKPLVD-FANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
AL++ GG G RL PL+ PKP + F K ++ +E L + E +LA+ E
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEA 64
Query: 60 MLNXXXXXXXXXXXXXTCSQETEPLG--TAGPLALARDKLIDDSGEPFFVL------NSD 111
+ EPLG TAG + L + + + E VL D
Sbjct: 65 VARPYADGIRLL---------LEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDD 115
Query: 112 VISEYPLKQMIEFHRGRGGEASIMVD---EPSK----YGVVVMEETTG---KVEKFVEKP 161
L M+E E +V P++ YG + + G + E FVEKP
Sbjct: 116 EAYREALATMLE-----AAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKP 170
Query: 162 K-----NFV--GNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMV--LPG 212
++ G N G++ P+ + + + E + A L + LP
Sbjct: 171 SYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPK 230
Query: 213 FWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGS---NIIGNVLV---------HEGAKI 260
+D G ++K ++ G + +GN HE +
Sbjct: 231 ISIDYG--------------VMEKAERVRVVLGRFPWDDVGNWRALERVFSQDPHENVVL 276
Query: 261 GDGCLIGPDKHACISSSIIGWHSTVG 286
G+G + D C+ + G +T+G
Sbjct: 277 GEGRHVALDTFGCVVYADRGVVATLG 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,609,475
Number of Sequences: 62578
Number of extensions: 395819
Number of successful extensions: 1039
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 72
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)