Query 020113
Match_columns 331
No_of_seqs 180 out of 2429
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 1.1E-59 2.5E-64 397.0 27.8 324 1-327 10-350 (371)
2 COG1208 GCD1 Nucleoside-diphos 100.0 2.1E-55 4.6E-60 397.1 36.7 298 1-305 2-324 (358)
3 PRK05293 glgC glucose-1-phosph 100.0 2.2E-51 4.7E-56 378.0 33.1 317 1-325 4-356 (380)
4 PRK00844 glgC glucose-1-phosph 100.0 1.2E-50 2.5E-55 375.1 33.1 321 1-326 6-380 (407)
5 COG0448 GlgC ADP-glucose pyrop 100.0 2.9E-51 6.3E-56 358.7 25.0 316 2-325 7-359 (393)
6 TIGR01208 rmlA_long glucose-1- 100.0 1.6E-48 3.5E-53 355.3 36.3 317 2-327 1-338 (353)
7 TIGR02091 glgC glucose-1-phosp 100.0 7.5E-49 1.6E-53 358.8 32.3 317 3-325 1-358 (361)
8 PRK00725 glgC glucose-1-phosph 100.0 2.1E-48 4.7E-53 361.1 33.5 320 1-325 16-391 (425)
9 PRK02862 glgC glucose-1-phosph 100.0 2.4E-48 5.3E-53 361.1 33.3 304 1-310 4-393 (429)
10 TIGR02092 glgD glucose-1-phosp 100.0 6.1E-49 1.3E-53 360.2 28.4 319 1-327 3-354 (369)
11 PLN02241 glucose-1-phosphate a 100.0 7.3E-47 1.6E-51 352.2 32.7 304 1-310 4-400 (436)
12 KOG1460 GDP-mannose pyrophosph 100.0 1.9E-46 4E-51 312.1 19.4 312 2-321 4-350 (407)
13 COG1209 RfbA dTDP-glucose pyro 100.0 1.8E-45 3.9E-50 305.6 23.8 273 1-287 1-283 (286)
14 PRK14355 glmU bifunctional N-a 100.0 3.6E-43 7.8E-48 330.7 33.5 313 1-326 4-353 (459)
15 KOG1462 Translation initiation 100.0 1.6E-44 3.4E-49 310.9 21.7 320 1-326 10-417 (433)
16 COG1207 GlmU N-acetylglucosami 100.0 3.6E-43 7.9E-48 307.5 28.0 312 1-321 3-365 (460)
17 PRK14358 glmU bifunctional N-a 100.0 2.2E-42 4.7E-47 325.8 32.3 311 1-325 8-354 (481)
18 PRK14356 glmU bifunctional N-a 100.0 7.2E-42 1.6E-46 322.2 31.5 309 1-325 6-353 (456)
19 PRK14352 glmU bifunctional N-a 100.0 2.1E-41 4.6E-46 320.2 33.2 308 1-318 5-364 (482)
20 TIGR01173 glmU UDP-N-acetylglu 100.0 6.7E-41 1.4E-45 315.5 31.5 307 1-324 1-344 (451)
21 cd06425 M1P_guanylylT_B_like_N 100.0 6.8E-41 1.5E-45 288.1 27.5 230 1-231 1-233 (233)
22 KOG1461 Translation initiation 100.0 1.3E-40 2.8E-45 302.6 28.4 320 1-327 25-400 (673)
23 PRK14353 glmU bifunctional N-a 100.0 6.6E-40 1.4E-44 308.0 32.8 308 1-321 6-348 (446)
24 PRK09451 glmU bifunctional N-a 100.0 2.6E-40 5.7E-45 311.2 28.5 308 1-324 6-348 (456)
25 TIGR01105 galF UTP-glucose-1-p 100.0 2.2E-39 4.7E-44 285.4 27.6 227 1-231 4-277 (297)
26 PRK14354 glmU bifunctional N-a 100.0 1.5E-38 3.2E-43 299.9 32.1 306 1-320 3-360 (458)
27 cd06428 M1P_guanylylT_A_like_N 100.0 9E-39 2E-43 278.8 24.8 226 3-229 1-256 (257)
28 PRK14359 glmU bifunctional N-a 100.0 1.1E-37 2.5E-42 291.7 32.7 305 1-324 3-355 (430)
29 PF00483 NTP_transferase: Nucl 100.0 1.1E-38 2.4E-43 277.2 22.9 229 2-232 1-247 (248)
30 PRK14357 glmU bifunctional N-a 100.0 1.4E-37 3E-42 292.4 31.4 291 1-312 1-342 (448)
31 PRK10122 GalU regulator GalF; 100.0 1.1E-37 2.3E-42 275.4 27.0 226 1-230 4-276 (297)
32 PRK15480 glucose-1-phosphate t 100.0 1E-37 2.2E-42 274.1 26.1 226 1-231 4-241 (292)
33 PRK14360 glmU bifunctional N-a 100.0 5.1E-37 1.1E-41 288.8 31.4 306 1-321 2-358 (450)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.7E-37 3.8E-42 268.1 25.9 225 1-230 1-237 (240)
35 TIGR02623 G1P_cyt_trans glucos 100.0 3.3E-37 7.2E-42 267.7 26.9 226 2-233 1-247 (254)
36 TIGR01207 rmlA glucose-1-phosp 100.0 4.8E-37 1E-41 269.6 25.0 224 2-230 1-236 (286)
37 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.8E-35 3.9E-40 255.0 27.3 226 1-232 1-235 (236)
38 cd02541 UGPase_prokaryotic Pro 100.0 1.1E-35 2.4E-40 260.8 25.2 228 1-231 1-265 (267)
39 cd06422 NTP_transferase_like_1 100.0 1.1E-35 2.5E-40 253.6 24.6 215 2-226 1-221 (221)
40 PRK13389 UTP--glucose-1-phosph 100.0 2.4E-35 5.3E-40 260.8 26.6 226 1-230 9-279 (302)
41 cd06915 NTP_transferase_WcbM_l 100.0 2.6E-35 5.6E-40 251.8 25.5 219 3-226 1-222 (223)
42 cd02524 G1P_cytidylyltransfera 100.0 3.1E-35 6.8E-40 255.8 26.3 225 3-231 1-246 (253)
43 TIGR01099 galU UTP-glucose-1-p 100.0 1.2E-34 2.6E-39 253.4 23.9 223 1-226 1-260 (260)
44 cd06426 NTP_transferase_like_2 100.0 1E-33 2.3E-38 241.4 25.2 216 3-227 1-220 (220)
45 cd04181 NTP_transferase NTP_tr 100.0 9.7E-34 2.1E-38 241.1 24.5 211 3-218 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 1.2E-32 2.7E-37 229.2 22.2 230 1-233 5-272 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 3.2E-30 6.9E-35 219.2 19.1 176 1-181 1-217 (217)
48 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 4.7E-29 1E-33 214.3 22.3 213 3-223 1-230 (231)
49 cd02508 ADP_Glucose_PP ADP-glu 100.0 1.4E-29 3E-34 212.6 17.5 183 3-217 1-200 (200)
50 cd02523 PC_cytidylyltransferas 100.0 5.6E-29 1.2E-33 213.5 20.6 211 3-226 1-228 (229)
51 cd02540 GT2_GlmU_N_bac N-termi 100.0 1.5E-26 3.3E-31 198.5 20.9 210 3-223 1-229 (229)
52 cd02507 eIF-2B_gamma_N_like Th 100.0 5.2E-27 1.1E-31 199.1 17.6 177 1-181 1-216 (216)
53 cd04198 eIF-2B_gamma_N The N-t 99.9 6.6E-27 1.4E-31 198.3 17.2 177 1-181 1-214 (214)
54 cd02509 GDP-M1P_Guanylyltransf 99.9 1.6E-26 3.5E-31 202.5 18.0 218 1-222 1-273 (274)
55 cd02517 CMP-KDO-Synthetase CMP 99.9 1.4E-24 2.9E-29 187.5 21.8 213 1-228 2-238 (239)
56 PRK05450 3-deoxy-manno-octulos 99.9 2.3E-24 4.9E-29 186.9 23.1 214 2-230 4-244 (245)
57 COG1213 Predicted sugar nucleo 99.9 5E-25 1.1E-29 180.6 17.6 218 1-235 4-233 (239)
58 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.2E-24 2.5E-29 203.8 19.5 224 1-228 1-282 (468)
59 PRK13368 3-deoxy-manno-octulos 99.9 9.1E-23 2E-27 176.0 22.3 208 2-228 4-236 (238)
60 COG4750 LicC CTP:phosphocholin 99.9 2.2E-20 4.8E-25 147.0 14.2 215 1-231 1-226 (231)
61 COG0836 {ManC} Mannose-1-phosp 99.8 2.8E-19 6E-24 153.0 20.4 226 1-228 2-283 (333)
62 PLN02917 CMP-KDO synthetase 99.8 8.1E-19 1.8E-23 154.6 22.4 214 2-231 49-288 (293)
63 PRK15460 cpsB mannose-1-phosph 99.8 1.9E-19 4E-24 167.3 17.8 224 1-227 6-290 (478)
64 TIGR00454 conserved hypothetic 99.8 5.7E-18 1.2E-22 139.2 16.7 178 1-227 1-181 (183)
65 TIGR00466 kdsB 3-deoxy-D-manno 99.8 2.5E-16 5.4E-21 135.3 21.8 207 3-223 2-237 (238)
66 COG2266 GTP:adenosylcobinamide 99.7 1.7E-16 3.7E-21 124.4 17.3 165 1-231 1-168 (177)
67 TIGR00453 ispD 2-C-methyl-D-er 99.7 2E-16 4.3E-21 134.5 16.1 207 2-228 1-215 (217)
68 PRK00155 ispD 2-C-methyl-D-ery 99.7 3.3E-16 7.2E-21 134.0 17.1 211 1-231 4-223 (227)
69 cd02516 CDP-ME_synthetase CDP- 99.7 2.4E-16 5.2E-21 134.1 16.0 208 2-225 2-217 (218)
70 TIGR03310 matur_ygfJ molybdenu 99.7 5.7E-16 1.2E-20 128.6 15.4 117 3-130 2-120 (188)
71 PRK09382 ispDF bifunctional 2- 99.7 1.3E-15 2.8E-20 138.3 18.8 203 1-231 6-213 (378)
72 PF12804 NTP_transf_3: MobA-li 99.7 3.2E-16 6.9E-21 126.7 12.7 119 3-135 1-121 (160)
73 cd04182 GT_2_like_f GT_2_like_ 99.7 6.4E-16 1.4E-20 128.0 14.8 119 1-130 1-121 (186)
74 cd02513 CMP-NeuAc_Synthase CMP 99.7 2.4E-15 5.1E-20 128.4 18.7 202 1-228 2-221 (223)
75 cd02503 MobA MobA catalyzes th 99.7 1.8E-15 3.9E-20 124.9 14.9 107 1-125 1-109 (181)
76 TIGR03202 pucB xanthine dehydr 99.7 1.9E-15 4.2E-20 125.7 14.8 121 1-128 1-124 (190)
77 COG2068 Uncharacterized MobA-r 99.7 7.6E-15 1.6E-19 118.6 17.1 185 2-230 7-197 (199)
78 PRK00317 mobA molybdopterin-gu 99.6 6.5E-15 1.4E-19 122.8 15.3 111 1-127 4-116 (193)
79 PRK13385 2-C-methyl-D-erythrit 99.6 1.2E-14 2.6E-19 124.6 17.2 211 2-231 4-224 (230)
80 TIGR02665 molyb_mobA molybdopt 99.6 1.2E-14 2.5E-19 120.6 14.6 113 1-127 1-115 (186)
81 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 2.5E-15 5.5E-20 127.6 8.5 124 194-325 32-192 (231)
82 PRK02726 molybdopterin-guanine 99.6 9.9E-14 2.1E-18 116.1 15.2 110 1-127 8-120 (200)
83 TIGR03584 PseF pseudaminic aci 99.6 8E-13 1.7E-17 112.3 20.9 200 3-229 2-219 (222)
84 PLN02728 2-C-methyl-D-erythrit 99.5 6.4E-13 1.4E-17 114.5 18.6 208 1-230 25-244 (252)
85 PRK14489 putative bifunctional 99.5 1.6E-13 3.5E-18 125.1 15.6 186 1-229 6-196 (366)
86 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 5.7E-14 1.2E-18 99.8 9.7 79 242-324 2-80 (81)
87 COG1212 KdsB CMP-2-keto-3-deox 99.5 1.6E-12 3.4E-17 106.0 18.6 214 3-231 6-243 (247)
88 cd02518 GT2_SpsF SpsF is a gly 99.5 1.2E-12 2.6E-17 112.5 18.1 186 3-230 2-202 (233)
89 COG0746 MobA Molybdopterin-gua 99.5 7.7E-13 1.7E-17 109.0 15.1 179 1-228 5-190 (192)
90 PRK00560 molybdopterin-guanine 99.5 1.6E-12 3.6E-17 108.4 16.7 178 1-230 9-191 (196)
91 cd03356 LbH_G1P_AT_C_like Left 99.5 3.8E-13 8.3E-18 95.1 9.8 77 242-322 2-79 (79)
92 PF01128 IspD: 2-C-methyl-D-er 99.5 2.9E-12 6.2E-17 107.8 15.7 208 1-230 1-219 (221)
93 cd05824 LbH_M1P_guanylylT_C Ma 99.5 5.1E-13 1.1E-17 94.6 9.5 78 242-322 2-80 (80)
94 COG1211 IspD 4-diphosphocytidy 99.4 2.3E-11 5E-16 101.9 19.2 206 2-230 6-226 (230)
95 KOG1461 Translation initiation 99.4 6.2E-13 1.3E-17 122.7 7.5 82 242-327 336-418 (673)
96 PRK14490 putative bifunctional 99.4 9.6E-12 2.1E-16 113.8 15.3 107 1-124 175-283 (369)
97 PRK14500 putative bifunctional 99.4 1.1E-11 2.4E-16 111.3 14.9 109 1-126 161-271 (346)
98 cd05787 LbH_eIF2B_epsilon eIF- 99.4 6.4E-12 1.4E-16 88.8 9.4 77 242-322 2-79 (79)
99 KOG1462 Translation initiation 99.3 2.2E-12 4.7E-17 112.7 5.7 74 251-327 328-401 (433)
100 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 2E-11 4.4E-16 106.0 11.0 46 277-322 136-182 (338)
101 cd05636 LbH_G1P_TT_C_like Puta 99.3 1.6E-11 3.5E-16 99.4 9.6 85 238-325 16-101 (163)
102 cd04180 UGPase_euk_like Eukary 99.3 4.6E-12 1E-16 110.1 6.5 154 2-163 2-176 (266)
103 cd04651 LbH_G1P_AT_C Glucose-1 99.3 2.1E-11 4.7E-16 90.7 8.3 76 247-327 3-78 (104)
104 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 3.2E-11 6.9E-16 100.5 9.7 83 238-323 14-97 (193)
105 cd05636 LbH_G1P_TT_C_like Puta 99.2 4.9E-11 1.1E-15 96.6 9.6 70 238-310 34-103 (163)
106 COG0663 PaaY Carbonic anhydras 99.2 2.6E-11 5.7E-16 96.1 7.6 83 239-323 50-136 (176)
107 TIGR03570 NeuD_NnaD sugar O-ac 99.2 3.2E-10 7E-15 94.9 13.5 83 240-324 100-184 (201)
108 cd03360 LbH_AT_putative Putati 99.2 3.6E-10 7.7E-15 94.1 13.4 83 240-324 97-181 (197)
109 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 1E-10 2.2E-15 101.7 9.8 69 239-309 11-92 (254)
110 COG1083 NeuA CMP-N-acetylneura 99.2 4.7E-10 1E-14 91.0 12.7 203 3-232 6-224 (228)
111 TIGR02287 PaaY phenylacetic ac 99.2 1.3E-10 2.9E-15 95.9 9.7 60 261-323 51-116 (192)
112 PRK05289 UDP-N-acetylglucosami 99.2 1.3E-10 2.8E-15 101.2 10.1 86 238-325 13-119 (262)
113 cd04745 LbH_paaY_like paaY-lik 99.2 1.6E-10 3.4E-15 92.7 9.9 82 240-324 19-109 (155)
114 cd03358 LbH_WxcM_N_like WcxM-l 99.2 1.8E-10 3.8E-15 88.2 9.7 80 242-323 1-97 (119)
115 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 9.8E-11 2.1E-15 104.8 9.4 67 241-309 105-172 (324)
116 cd04745 LbH_paaY_like paaY-lik 99.2 1.5E-10 3.2E-15 92.9 9.2 78 241-320 41-123 (155)
117 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 5.3E-10 1.2E-14 101.4 14.0 83 241-325 114-217 (343)
118 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.5E-10 3.3E-15 82.1 7.7 64 260-326 2-65 (81)
119 cd05635 LbH_unknown Uncharacte 99.2 3.3E-10 7.1E-15 83.6 9.6 82 239-325 11-93 (101)
120 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 1.8E-10 4E-15 98.2 9.2 68 257-326 129-206 (269)
121 cd04650 LbH_FBP Ferripyochelin 99.1 2.7E-10 5.8E-15 91.1 9.5 82 240-324 19-109 (154)
122 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 6.4E-10 1.4E-14 99.5 12.3 106 213-321 66-173 (324)
123 PRK13627 carnitine operon prot 99.1 3.6E-10 7.9E-15 93.6 9.9 48 276-324 71-119 (196)
124 cd03350 LbH_THP_succinylT 2,3, 99.1 5.5E-10 1.2E-14 87.8 10.3 84 240-325 14-107 (139)
125 PRK00892 lpxD UDP-3-O-[3-hydro 99.1 3E-10 6.6E-15 102.9 9.9 84 239-324 130-238 (343)
126 TIGR02287 PaaY phenylacetic ac 99.1 4.1E-10 8.9E-15 92.9 9.6 82 241-324 10-99 (192)
127 PLN02296 carbonate dehydratase 99.1 3.3E-10 7.1E-15 98.1 9.4 62 259-323 93-166 (269)
128 COG1044 LpxD UDP-3-O-[3-hydrox 99.1 2.2E-10 4.8E-15 99.7 8.0 68 240-309 112-180 (338)
129 cd04645 LbH_gamma_CA_like Gamm 99.1 4.9E-10 1.1E-14 89.7 9.2 80 242-324 20-108 (153)
130 cd03356 LbH_G1P_AT_C_like Left 99.1 3.4E-10 7.3E-15 79.9 7.3 64 260-326 2-65 (79)
131 cd05787 LbH_eIF2B_epsilon eIF- 99.1 3.4E-10 7.3E-15 79.9 7.3 65 260-327 2-66 (79)
132 cd04646 LbH_Dynactin_6 Dynacti 99.1 6.4E-10 1.4E-14 89.9 9.7 79 240-321 18-111 (164)
133 cd04650 LbH_FBP Ferripyochelin 99.1 5.8E-10 1.3E-14 89.2 9.3 81 242-324 3-91 (154)
134 TIGR01852 lipid_A_lpxA acyl-[a 99.1 5.6E-10 1.2E-14 97.0 9.8 51 240-292 11-62 (254)
135 PLN02472 uncharacterized prote 99.1 6.5E-10 1.4E-14 95.0 9.8 46 277-323 127-173 (246)
136 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 4.4E-10 9.6E-15 95.9 8.6 76 240-317 130-215 (269)
137 cd03360 LbH_AT_putative Putati 99.1 8.3E-10 1.8E-14 91.9 10.1 85 241-327 92-178 (197)
138 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.1 5.6E-10 1.2E-14 97.0 9.3 16 277-292 78-93 (254)
139 PRK10191 putative acyl transfe 99.1 1.4E-09 3.1E-14 85.4 10.6 85 237-323 45-139 (146)
140 cd00710 LbH_gamma_CA Gamma car 99.1 8E-10 1.7E-14 89.7 9.5 62 258-322 65-127 (167)
141 COG0663 PaaY Carbonic anhydras 99.1 1.2E-09 2.6E-14 86.7 9.8 88 239-327 17-123 (176)
142 cd05824 LbH_M1P_guanylylT_C Ma 99.1 6.9E-10 1.5E-14 78.5 7.7 63 255-325 3-65 (80)
143 cd04646 LbH_Dynactin_6 Dynacti 99.1 1.1E-09 2.5E-14 88.4 9.8 79 242-322 2-94 (164)
144 COG1207 GlmU N-acetylglucosami 99.1 2.6E-10 5.7E-15 101.6 6.4 82 242-326 251-335 (460)
145 cd03353 LbH_GlmU_C N-acetyl-gl 99.1 9E-10 1.9E-14 91.8 9.3 79 240-321 34-112 (193)
146 cd03350 LbH_THP_succinylT 2,3, 99.1 1.6E-09 3.6E-14 85.1 10.2 74 241-316 33-116 (139)
147 PLN02296 carbonate dehydratase 99.1 1.1E-09 2.4E-14 94.8 10.0 83 240-324 53-149 (269)
148 TIGR03570 NeuD_NnaD sugar O-ac 99.1 1.2E-09 2.7E-14 91.4 10.0 85 241-327 95-181 (201)
149 PRK05289 UDP-N-acetylglucosami 99.0 9.7E-10 2.1E-14 95.7 9.4 61 242-309 5-65 (262)
150 PRK13627 carnitine operon prot 99.0 1.2E-09 2.7E-14 90.4 9.5 82 241-324 12-101 (196)
151 COG1208 GCD1 Nucleoside-diphos 99.0 9.3E-10 2E-14 100.1 9.6 69 246-322 256-324 (358)
152 PLN02472 uncharacterized prote 99.0 1.4E-09 3E-14 93.0 9.9 81 242-324 62-156 (246)
153 KOG1460 GDP-mannose pyrophosph 99.0 4.2E-10 9E-15 95.3 6.5 94 237-331 292-407 (407)
154 cd00208 LbetaH Left-handed par 99.0 1.1E-09 2.4E-14 76.8 7.8 67 241-309 2-77 (78)
155 cd04645 LbH_gamma_CA_like Gamm 99.0 2.3E-09 5E-14 85.8 10.3 77 244-322 4-88 (153)
156 cd04649 LbH_THP_succinylT_puta 99.0 2.2E-09 4.8E-14 82.9 9.6 81 239-324 13-102 (147)
157 PRK12461 UDP-N-acetylglucosami 99.0 1.6E-09 3.4E-14 93.6 9.8 69 239-309 11-92 (255)
158 PRK14356 glmU bifunctional N-a 99.0 6.5E-10 1.4E-14 105.1 8.1 82 239-323 287-368 (456)
159 TIGR03308 phn_thr-fam phosphon 99.0 1.9E-09 4.1E-14 90.1 9.9 83 240-325 20-140 (204)
160 TIGR01172 cysE serine O-acetyl 99.0 1.7E-09 3.7E-14 87.2 9.3 72 239-312 67-149 (162)
161 cd03358 LbH_WxcM_N_like WcxM-l 99.0 2.1E-09 4.5E-14 82.2 9.4 72 239-312 16-103 (119)
162 PRK09527 lacA galactoside O-ac 99.0 6.9E-09 1.5E-13 86.2 12.8 81 241-323 57-161 (203)
163 cd03352 LbH_LpxD UDP-3-O-acyl- 99.0 2.2E-09 4.8E-14 90.3 10.1 68 241-310 21-108 (205)
164 TIGR01852 lipid_A_lpxA acyl-[a 99.0 1.5E-09 3.3E-14 94.3 9.3 14 278-291 78-91 (254)
165 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.0 1.2E-09 2.5E-14 93.0 8.2 89 239-329 104-202 (231)
166 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 2E-09 4.2E-14 92.9 9.4 74 241-316 134-217 (272)
167 cd00710 LbH_gamma_CA Gamma car 99.0 2.7E-09 5.8E-14 86.6 9.6 84 241-326 22-114 (167)
168 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 2.5E-09 5.5E-14 92.2 9.7 82 242-326 118-209 (272)
169 cd03359 LbH_Dynactin_5 Dynacti 99.0 3E-09 6.5E-14 85.8 9.5 77 242-321 24-117 (161)
170 PRK05293 glgC glucose-1-phosph 99.0 1.4E-09 3E-14 100.4 8.6 75 247-324 295-377 (380)
171 PLN02739 serine acetyltransfer 99.0 4.3E-09 9.4E-14 92.6 10.9 74 236-311 208-292 (355)
172 cd04193 UDPGlcNAc_PPase UDPGlc 99.0 1.4E-08 3.1E-13 90.6 14.1 155 1-161 16-221 (323)
173 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2.7E-09 5.9E-14 79.4 7.8 67 241-312 14-80 (104)
174 PLN02357 serine acetyltransfer 99.0 4.5E-09 9.8E-14 93.3 10.4 73 237-311 230-313 (360)
175 TIGR01173 glmU UDP-N-acetylglu 99.0 1.5E-09 3.3E-14 102.5 8.0 76 240-318 280-355 (451)
176 TIGR03308 phn_thr-fam phosphon 99.0 4.7E-09 1E-13 87.7 10.0 65 242-310 5-69 (204)
177 COG1043 LpxA Acyl-[acyl carrie 99.0 3.4E-09 7.4E-14 87.4 8.7 55 237-293 13-68 (260)
178 cd03359 LbH_Dynactin_5 Dynacti 99.0 4E-09 8.6E-14 85.1 9.1 80 240-321 43-135 (161)
179 PLN02694 serine O-acetyltransf 99.0 3.2E-09 6.9E-14 91.6 8.7 73 237-311 164-247 (294)
180 COG0448 GlgC ADP-glucose pyrop 98.9 2.7E-09 5.9E-14 95.0 8.3 67 240-312 297-363 (393)
181 PLN02474 UTP--glucose-1-phosph 98.9 3.6E-07 7.8E-12 84.6 22.4 304 3-317 82-466 (469)
182 PRK12461 UDP-N-acetylglucosami 98.9 4.3E-09 9.4E-14 90.9 9.2 77 238-316 4-94 (255)
183 PRK11132 cysE serine acetyltra 98.9 3.5E-09 7.6E-14 91.4 8.6 72 238-311 146-228 (273)
184 PRK09451 glmU bifunctional N-a 98.9 2.6E-09 5.6E-14 101.0 8.1 79 240-321 284-362 (456)
185 PRK14353 glmU bifunctional N-a 98.9 4.2E-09 9.2E-14 99.3 9.5 63 257-322 303-366 (446)
186 PRK14358 glmU bifunctional N-a 98.9 2.5E-09 5.4E-14 101.5 7.5 75 241-318 290-364 (481)
187 PRK10502 putative acyl transfe 98.9 1E-08 2.2E-13 84.3 9.7 84 239-324 51-155 (182)
188 PRK14355 glmU bifunctional N-a 98.9 7E-09 1.5E-13 98.1 9.0 74 239-315 286-359 (459)
189 PTZ00339 UDP-N-acetylglucosami 98.9 1.2E-07 2.7E-12 88.4 16.5 180 1-184 107-349 (482)
190 cd05635 LbH_unknown Uncharacte 98.9 1.2E-08 2.5E-13 75.4 7.8 67 240-311 30-96 (101)
191 PRK11132 cysE serine acetyltra 98.9 2.1E-08 4.6E-13 86.5 10.6 27 295-321 194-221 (273)
192 cd04647 LbH_MAT_like Maltose O 98.9 1.7E-08 3.7E-13 75.8 8.7 77 241-320 3-101 (109)
193 COG1043 LpxA Acyl-[acyl carrie 98.9 6.1E-09 1.3E-13 85.9 6.7 64 239-309 3-66 (260)
194 cd03357 LbH_MAT_GAT Maltose O- 98.8 1.4E-08 3.1E-13 82.5 8.5 70 241-312 64-154 (169)
195 PF02348 CTP_transf_3: Cytidyl 98.8 6.9E-08 1.5E-12 81.9 13.0 116 3-131 2-120 (217)
196 PRK10191 putative acyl transfe 98.8 2.3E-08 5E-13 78.6 9.2 90 237-328 39-133 (146)
197 cd05825 LbH_wcaF_like wcaF-lik 98.8 2.1E-08 4.5E-13 75.1 8.7 71 241-313 5-93 (107)
198 TIGR03536 DapD_gpp 2,3,4,5-tet 98.8 1.7E-08 3.7E-13 87.2 8.8 50 276-326 224-281 (341)
199 PRK00844 glgC glucose-1-phosph 98.8 1.1E-08 2.4E-13 95.2 8.3 68 239-311 315-382 (407)
200 cd03352 LbH_LpxD UDP-3-O-acyl- 98.8 3.4E-08 7.3E-13 83.1 10.1 66 242-309 4-70 (205)
201 PRK10092 maltose O-acetyltrans 98.8 1.4E-07 3E-12 77.4 13.4 35 255-291 71-108 (183)
202 cd00208 LbetaH Left-handed par 98.8 2.9E-08 6.4E-13 69.5 8.1 63 260-324 3-75 (78)
203 TIGR01172 cysE serine O-acetyl 98.8 4.1E-08 8.9E-13 79.1 10.0 34 295-328 114-154 (162)
204 TIGR03535 DapD_actino 2,3,4,5- 98.8 2.4E-08 5.2E-13 85.8 8.9 83 237-325 163-255 (319)
205 PRK14354 glmU bifunctional N-a 98.8 2E-08 4.2E-13 95.1 9.4 64 258-324 317-381 (458)
206 PLN02694 serine O-acetyltransf 98.8 3.6E-08 7.7E-13 85.2 9.6 79 238-322 159-241 (294)
207 PRK14352 glmU bifunctional N-a 98.8 2.9E-08 6.2E-13 94.5 9.6 54 270-324 333-387 (482)
208 cd03354 LbH_SAT Serine acetylt 98.8 4.4E-08 9.5E-13 72.5 8.4 34 277-310 55-88 (101)
209 PRK09677 putative lipopolysacc 98.8 3.5E-08 7.5E-13 81.9 8.7 78 239-319 65-172 (192)
210 KOG1322 GDP-mannose pyrophosph 98.8 6.1E-09 1.3E-13 89.7 4.2 94 238-331 269-371 (371)
211 COG1861 SpsF Spore coat polysa 98.8 7.6E-07 1.6E-11 72.9 15.8 186 1-230 3-204 (241)
212 cd04649 LbH_THP_succinylT_puta 98.8 5.5E-08 1.2E-12 75.2 8.7 67 240-310 26-105 (147)
213 cd03357 LbH_MAT_GAT Maltose O- 98.7 1.1E-07 2.3E-12 77.4 10.5 81 241-323 44-148 (169)
214 PRK10092 maltose O-acetyltrans 98.7 6.1E-08 1.3E-12 79.5 8.9 69 242-312 76-165 (183)
215 PRK00725 glgC glucose-1-phosph 98.7 2.7E-08 5.9E-13 93.0 7.8 68 239-311 327-394 (425)
216 cd03354 LbH_SAT Serine acetylt 98.7 1.1E-07 2.3E-12 70.5 9.3 74 242-323 5-84 (101)
217 PRK14359 glmU bifunctional N-a 98.7 4.8E-08 1E-12 91.7 9.0 76 245-324 253-328 (430)
218 TIGR02091 glgC glucose-1-phosp 98.7 4.2E-08 9.1E-13 89.9 8.3 63 246-311 295-361 (361)
219 TIGR02092 glgD glucose-1-phosp 98.7 3.7E-08 8E-13 90.6 7.8 71 246-319 290-363 (369)
220 PRK14360 glmU bifunctional N-a 98.7 4.2E-08 9.1E-13 92.7 8.3 26 242-267 316-341 (450)
221 PRK14357 glmU bifunctional N-a 98.7 4.5E-08 9.8E-13 92.4 8.4 54 270-324 317-371 (448)
222 PLN02739 serine acetyltransfer 98.7 7.8E-08 1.7E-12 84.8 9.2 42 237-280 203-247 (355)
223 COG1045 CysE Serine acetyltran 98.7 1.5E-07 3.3E-12 75.7 8.9 74 237-312 71-155 (194)
224 PRK02862 glgC glucose-1-phosph 98.6 7.7E-08 1.7E-12 90.1 8.1 67 257-327 308-393 (429)
225 PRK09527 lacA galactoside O-ac 98.6 1.6E-07 3.4E-12 78.1 8.9 70 241-312 77-167 (203)
226 PRK00576 molybdopterin-guanine 98.6 6.1E-07 1.3E-11 73.7 12.4 96 21-127 3-102 (178)
227 PRK09677 putative lipopolysacc 98.6 2.2E-07 4.8E-12 77.1 9.4 81 242-324 46-161 (192)
228 PRK10502 putative acyl transfe 98.6 1.5E-07 3.2E-12 77.4 8.1 68 242-311 74-159 (182)
229 COG2171 DapD Tetrahydrodipicol 98.6 1E-07 2.2E-12 80.3 6.6 30 295-324 183-213 (271)
230 PLN02241 glucose-1-phosphate a 98.6 2E-07 4.3E-12 87.5 9.1 63 258-324 316-397 (436)
231 PLN02357 serine acetyltransfer 98.6 3.2E-07 6.9E-12 81.7 9.7 80 238-323 225-308 (360)
232 KOG3121 Dynactin, subunit p25 98.6 6.4E-08 1.4E-12 73.0 4.4 63 259-323 86-149 (184)
233 TIGR01208 rmlA_long glucose-1- 98.5 2.4E-07 5.3E-12 84.6 8.2 49 272-321 300-352 (353)
234 cd03349 LbH_XAT Xenobiotic acy 98.5 5E-07 1.1E-11 71.3 8.5 44 276-320 73-116 (145)
235 cd05825 LbH_wcaF_like wcaF-lik 98.5 8.3E-07 1.8E-11 66.4 8.9 29 295-323 57-86 (107)
236 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 7.7E-07 1.7E-11 77.1 8.9 32 277-310 251-282 (341)
237 cd04647 LbH_MAT_like Maltose O 98.5 1.1E-06 2.4E-11 65.8 8.4 29 295-323 59-88 (109)
238 cd00897 UGPase_euk Eukaryotic 98.4 1.6E-05 3.5E-10 69.9 15.0 177 3-184 6-231 (300)
239 COG2171 DapD Tetrahydrodipicol 98.3 1.3E-06 2.9E-11 73.7 6.3 70 239-310 138-216 (271)
240 TIGR03535 DapD_actino 2,3,4,5- 98.3 3.3E-06 7.2E-11 72.9 8.5 55 252-310 194-257 (319)
241 COG1045 CysE Serine acetyltran 98.3 8.6E-06 1.9E-10 65.8 9.6 79 237-322 65-148 (194)
242 TIGR02353 NRPS_term_dom non-ri 98.2 6.8E-06 1.5E-10 81.2 8.9 79 238-318 596-688 (695)
243 PF00132 Hexapep: Bacterial tr 98.1 2.2E-06 4.7E-11 50.3 3.0 34 277-310 2-35 (36)
244 KOG4750 Serine O-acetyltransfe 98.1 8.2E-06 1.8E-10 66.8 6.2 59 251-311 168-235 (269)
245 PF07959 Fucokinase: L-fucokin 98.1 3.8E-05 8.1E-10 71.3 11.2 77 104-184 55-156 (414)
246 TIGR03552 F420_cofC 2-phospho- 98.0 0.00024 5.2E-09 59.1 14.0 87 30-126 29-117 (195)
247 PRK13412 fkp bifunctional fuco 98.0 0.0003 6.5E-09 70.9 16.6 198 104-313 154-391 (974)
248 PF01704 UDPGP: UTP--glucose-1 98.0 0.00033 7.1E-09 64.9 15.8 178 3-184 59-286 (420)
249 cd03349 LbH_XAT Xenobiotic acy 98.0 6.1E-05 1.3E-09 59.4 9.2 26 242-267 4-31 (145)
250 KOG3121 Dynactin, subunit p25 98.0 1.1E-05 2.4E-10 61.1 4.6 86 242-327 42-141 (184)
251 TIGR02353 NRPS_term_dom non-ri 98.0 3E-05 6.5E-10 76.7 8.6 74 238-311 111-195 (695)
252 PLN02435 probable UDP-N-acetyl 97.9 0.00012 2.5E-09 68.6 11.6 177 3-184 119-362 (493)
253 COG0110 WbbJ Acetyltransferase 97.9 5.1E-05 1.1E-09 62.9 7.3 62 250-311 86-159 (190)
254 PF00132 Hexapep: Bacterial tr 97.8 2.1E-05 4.6E-10 46.0 2.8 15 277-291 20-34 (36)
255 PF14602 Hexapep_2: Hexapeptid 97.8 3.7E-05 8.1E-10 44.2 3.4 29 279-309 4-32 (34)
256 PF14602 Hexapep_2: Hexapeptid 97.6 8.7E-05 1.9E-09 42.6 3.8 30 259-291 3-32 (34)
257 COG4284 UDP-glucose pyrophosph 97.6 0.002 4.3E-08 59.3 14.3 175 2-183 107-336 (472)
258 COG4801 Predicted acyltransfer 97.5 0.00024 5.1E-09 58.7 6.2 75 250-326 21-101 (277)
259 KOG4042 Dynactin subunit p27/W 97.4 0.00011 2.5E-09 56.2 2.8 27 241-267 28-57 (190)
260 KOG4750 Serine O-acetyltransfe 97.4 0.00028 6.2E-09 58.0 5.1 29 295-323 201-230 (269)
261 cd06424 UGGPase UGGPase cataly 97.4 0.00052 1.1E-08 60.8 7.0 177 2-183 2-249 (315)
262 COG0110 WbbJ Acetyltransferase 97.0 0.0029 6.3E-08 52.3 7.7 29 295-323 125-154 (190)
263 PLN02830 UDP-sugar pyrophospho 96.8 0.03 6.5E-07 54.4 13.4 129 3-135 131-308 (615)
264 cd00761 Glyco_tranf_GTA_type G 96.8 0.027 5.9E-07 43.5 11.2 97 26-126 3-103 (156)
265 PF00535 Glycos_transf_2: Glyc 96.4 0.024 5.3E-07 44.8 8.9 106 26-135 4-113 (169)
266 COG4801 Predicted acyltransfer 96.4 0.0072 1.6E-07 50.1 5.4 54 262-317 55-109 (277)
267 KOG2638 UDP-glucose pyrophosph 96.3 0.85 1.8E-05 41.6 19.7 62 4-68 107-175 (498)
268 KOG4042 Dynactin subunit p27/W 96.3 0.0024 5.1E-08 49.1 1.8 50 259-310 97-147 (190)
269 PF01983 CofC: Guanylyl transf 95.4 0.023 4.9E-07 47.8 4.5 107 1-125 1-113 (217)
270 cd06423 CESA_like CESA_like is 95.2 0.34 7.4E-06 38.2 10.7 101 26-129 3-107 (180)
271 cd04195 GT2_AmsE_like GT2_AmsE 95.1 0.54 1.2E-05 38.7 11.9 100 25-129 3-109 (201)
272 COG1920 Predicted nucleotidylt 95.0 1.2 2.6E-05 36.3 12.7 113 1-135 1-119 (210)
273 cd04188 DPG_synthase DPG_synth 94.9 0.36 7.8E-06 40.3 10.5 107 26-135 3-117 (211)
274 cd04186 GT_2_like_c Subfamily 94.7 0.68 1.5E-05 36.4 11.2 97 26-129 3-103 (166)
275 cd06427 CESA_like_2 CESA_like_ 94.7 0.65 1.4E-05 39.7 11.8 107 26-135 7-119 (241)
276 cd04179 DPM_DPG-synthase_like 94.2 0.76 1.6E-05 37.1 10.7 106 26-135 3-114 (185)
277 cd06439 CESA_like_1 CESA_like_ 94.2 0.97 2.1E-05 38.7 11.8 104 19-128 26-137 (251)
278 PF07959 Fucokinase: L-fucokin 93.8 0.12 2.6E-06 48.2 5.6 86 204-293 228-318 (414)
279 cd04196 GT_2_like_d Subfamily 93.7 1.1 2.5E-05 36.9 11.0 101 26-129 4-108 (214)
280 cd06442 DPM1_like DPM1_like re 93.7 1.1 2.3E-05 37.6 10.8 106 26-135 3-113 (224)
281 cd06435 CESA_NdvC_like NdvC_li 92.9 1.8 3.8E-05 36.6 11.1 101 25-126 3-110 (236)
282 cd02510 pp-GalNAc-T pp-GalNAc- 92.9 1.9 4.2E-05 38.2 11.7 102 26-130 4-113 (299)
283 PLN02726 dolichyl-phosphate be 92.7 1.5 3.3E-05 37.5 10.5 107 26-135 15-128 (243)
284 cd02525 Succinoglycan_BP_ExoA 92.7 2 4.4E-05 36.4 11.3 102 26-132 6-113 (249)
285 KOG2388 UDP-N-acetylglucosamin 92.6 0.33 7.2E-06 45.1 6.3 62 2-66 99-175 (477)
286 cd04185 GT_2_like_b Subfamily 92.5 1.8 4E-05 35.5 10.5 98 27-126 4-105 (202)
287 PRK11204 N-glycosyltransferase 92.3 1.9 4.1E-05 40.3 11.3 101 25-129 59-163 (420)
288 cd06421 CESA_CelA_like CESA_Ce 92.2 3.7 8E-05 34.5 12.2 97 26-127 7-111 (234)
289 cd04187 DPM1_like_bac Bacteria 91.9 2.3 4.9E-05 34.3 10.1 103 26-133 3-112 (181)
290 cd02520 Glucosylceramide_synth 91.6 3.5 7.7E-05 33.8 11.1 98 26-126 7-112 (196)
291 cd06433 GT_2_WfgS_like WfgS an 91.2 3 6.6E-05 33.8 10.3 95 27-128 5-103 (202)
292 cd06438 EpsO_like EpsO protein 91.0 5.1 0.00011 32.4 11.3 99 25-127 2-108 (183)
293 TIGR03472 HpnI hopanoid biosyn 90.8 2.9 6.2E-05 38.5 10.7 100 25-127 46-153 (373)
294 PRK14583 hmsR N-glycosyltransf 90.4 3.2 6.9E-05 39.2 10.7 102 24-129 79-184 (444)
295 cd06434 GT2_HAS Hyaluronan syn 90.3 4.5 9.8E-05 34.0 10.8 89 32-126 14-103 (235)
296 cd04192 GT_2_like_e Subfamily 89.5 4.7 0.0001 33.6 10.2 103 26-131 3-113 (229)
297 TIGR03111 glyc2_xrt_Gpos1 puta 89.3 5 0.00011 37.9 11.1 100 25-129 54-160 (439)
298 cd06420 GT2_Chondriotin_Pol_N 89.3 5.3 0.00011 32.0 10.1 97 26-125 3-104 (182)
299 cd04184 GT2_RfbC_Mx_like Myxoc 89.1 7.5 0.00016 31.7 11.0 92 32-127 15-110 (202)
300 PRK10073 putative glycosyl tra 89.0 6.6 0.00014 35.5 11.3 105 26-135 12-120 (328)
301 PRK10714 undecaprenyl phosphat 88.9 4.7 0.0001 36.3 10.2 104 26-133 12-122 (325)
302 TIGR01556 rhamnosyltran L-rham 88.7 5.5 0.00012 34.8 10.4 98 32-135 8-108 (281)
303 TIGR03469 HonB hopene-associat 87.7 7.2 0.00016 36.0 10.9 108 25-132 45-165 (384)
304 KOG2978 Dolichol-phosphate man 87.5 9.9 0.00021 31.1 9.9 101 30-135 17-123 (238)
305 COG1215 Glycosyltransferases, 86.5 8.3 0.00018 36.0 10.8 104 25-131 59-168 (439)
306 cd06437 CESA_CaSu_A2 Cellulose 85.9 9.5 0.00021 32.1 10.0 96 26-125 7-112 (232)
307 PTZ00260 dolichyl-phosphate be 85.6 12 0.00026 33.9 10.9 95 30-127 81-189 (333)
308 PF13641 Glyco_tranf_2_3: Glyc 85.3 1.7 3.6E-05 36.6 5.0 102 25-129 6-115 (228)
309 cd06913 beta3GnTL1_like Beta 1 84.8 17 0.00037 30.2 11.0 102 26-130 3-114 (219)
310 cd02526 GT2_RfbF_like RfbF is 83.6 14 0.00031 30.9 10.2 89 29-122 7-97 (237)
311 PRK13412 fkp bifunctional fuco 83.3 1.6 3.5E-05 44.9 4.6 53 271-324 331-385 (974)
312 PRK11498 bcsA cellulose syntha 80.1 22 0.00048 36.6 11.2 97 25-130 265-369 (852)
313 cd02511 Beta4Glucosyltransfera 79.4 30 0.00066 29.1 10.6 93 26-129 6-100 (229)
314 PRK10063 putative glycosyl tra 78.8 41 0.0009 28.9 12.0 94 30-129 12-110 (248)
315 PRK10018 putative glycosyl tra 78.5 24 0.00052 31.0 9.9 96 26-127 11-112 (279)
316 PF07302 AroM: AroM protein; 77.0 41 0.0009 28.4 10.2 100 4-115 92-191 (221)
317 PF10111 Glyco_tranf_2_2: Glyc 76.3 53 0.0011 28.8 11.6 82 38-123 23-111 (281)
318 COG1216 Predicted glycosyltran 74.7 28 0.0006 30.9 9.4 105 28-135 12-119 (305)
319 TIGR03030 CelA cellulose synth 74.5 42 0.00092 33.9 11.5 100 25-129 136-257 (713)
320 cd02522 GT_2_like_a GT_2_like_ 72.8 33 0.00071 28.3 9.0 94 26-130 5-102 (221)
321 PRK13915 putative glucosyl-3-p 69.1 54 0.0012 29.3 9.8 98 27-127 38-143 (306)
322 cd06436 GlcNAc-1-P_transferase 67.0 61 0.0013 26.3 9.2 98 26-125 3-114 (191)
323 COG0299 PurN Folate-dependent 66.5 56 0.0012 27.0 8.4 16 1-16 1-16 (200)
324 COG0381 WecB UDP-N-acetylgluco 65.0 18 0.00039 33.2 5.9 99 27-128 9-116 (383)
325 PF09837 DUF2064: Uncharacteri 59.5 75 0.0016 24.0 8.0 102 37-147 1-105 (122)
326 PRK10481 hypothetical protein; 56.9 1.2E+02 0.0027 25.7 11.9 88 33-126 118-205 (224)
327 PF04519 Bactofilin: Polymer-f 56.8 30 0.00066 24.9 5.0 53 270-324 41-93 (101)
328 cd02514 GT13_GLCNAC-TI GT13_GL 55.4 1.6E+02 0.0035 26.7 11.1 98 25-129 5-129 (334)
329 PF14134 DUF4301: Domain of un 54.2 1.2E+02 0.0026 29.0 9.2 95 20-117 165-298 (513)
330 PF00583 Acetyltransf_1: Acety 53.3 26 0.00056 23.6 4.0 37 30-66 43-79 (83)
331 TIGR02990 ectoine_eutA ectoine 52.1 1.5E+02 0.0033 25.4 10.7 91 33-125 107-204 (239)
332 cd01025 TOPRIM_recR TOPRIM_rec 52.0 63 0.0014 24.1 5.9 53 33-85 44-98 (112)
333 COG2984 ABC-type uncharacteriz 51.3 1.8E+02 0.004 26.1 11.5 97 28-130 139-240 (322)
334 TIGR00236 wecB UDP-N-acetylglu 49.6 60 0.0013 29.5 6.9 84 26-112 5-96 (365)
335 PRK05454 glucosyltransferase M 49.5 3E+02 0.0064 27.9 12.0 103 24-127 128-247 (691)
336 TIGR00615 recR recombination p 48.4 1.1E+02 0.0024 25.3 7.4 53 33-85 122-176 (195)
337 PF13712 Glyco_tranf_2_5: Glyc 48.2 1.6E+02 0.0035 24.7 8.7 69 59-130 15-85 (217)
338 TIGR00639 PurN phosphoribosylg 47.5 85 0.0018 25.8 6.7 16 1-16 1-16 (190)
339 COG1664 CcmA Integral membrane 46.6 55 0.0012 25.7 5.1 8 242-249 26-33 (146)
340 PRK05647 purN phosphoribosylgl 45.8 61 0.0013 27.0 5.7 16 1-16 2-17 (200)
341 PF05060 MGAT2: N-acetylglucos 45.4 42 0.00091 30.6 4.9 55 12-66 23-81 (356)
342 KOG2638 UDP-glucose pyrophosph 43.5 31 0.00068 31.9 3.7 44 278-321 449-496 (498)
343 PF13704 Glyco_tranf_2_4: Glyc 43.5 1.1E+02 0.0025 21.4 8.8 36 32-67 5-40 (97)
344 TIGR02638 lactal_redase lactal 43.4 1.9E+02 0.0041 26.6 9.1 82 29-111 12-95 (379)
345 cd04191 Glucan_BSP_ModH Glucan 43.2 2.2E+02 0.0047 24.6 12.3 104 25-129 4-124 (254)
346 COG2179 Predicted hydrolase of 42.8 1.3E+02 0.0029 24.2 6.7 27 86-114 95-121 (175)
347 PRK14716 bacteriophage N4 adso 42.7 3.2E+02 0.007 26.4 10.7 101 25-125 71-182 (504)
348 KOG2977 Glycosyltransferase [G 42.7 1.9E+02 0.0041 25.6 8.1 80 33-115 85-171 (323)
349 PRK13844 recombination protein 41.2 1.8E+02 0.0039 24.2 7.6 52 33-85 126-179 (200)
350 PF02633 Creatininase: Creatin 41.1 90 0.002 26.6 6.2 46 33-78 87-135 (237)
351 PF13685 Fe-ADH_2: Iron-contai 38.4 1.4E+02 0.0029 25.9 6.8 98 33-135 6-105 (250)
352 PLN02331 phosphoribosylglycina 37.6 2.3E+02 0.0049 23.7 7.9 15 2-16 1-15 (207)
353 PRK00076 recR recombination pr 36.6 2.3E+02 0.0049 23.6 7.5 52 33-85 122-175 (196)
354 PF10609 ParA: ParA/MinD ATPas 36.0 78 0.0017 22.1 4.0 58 81-140 7-64 (81)
355 COG1664 CcmA Integral membrane 35.9 1.4E+02 0.003 23.4 5.9 11 299-309 106-116 (146)
356 cd08190 HOT Hydroxyacid-oxoaci 35.8 3.2E+02 0.007 25.5 9.5 80 30-110 7-88 (414)
357 cd08189 Fe-ADH5 Iron-containin 34.9 3.4E+02 0.0074 24.9 9.4 81 30-111 10-92 (374)
358 cd08176 LPO Lactadehyde:propan 34.2 3.3E+02 0.0071 25.1 9.1 81 30-111 12-94 (377)
359 cd08182 HEPD Hydroxyethylphosp 33.9 3.7E+02 0.0081 24.5 9.6 77 30-111 7-86 (367)
360 COG0463 WcaA Glycosyltransfera 33.1 2.4E+02 0.0051 22.0 7.8 88 32-124 16-106 (291)
361 TIGR00285 DNA-binding protein 32.8 73 0.0016 22.5 3.5 29 26-54 4-34 (87)
362 cd07039 TPP_PYR_POX Pyrimidine 32.7 2.5E+02 0.0055 22.3 7.4 88 34-130 3-91 (164)
363 TIGR00655 PurU formyltetrahydr 32.6 1.1E+02 0.0025 26.9 5.6 9 104-112 162-170 (280)
364 PF01936 NYN: NYN domain; Int 32.2 2.2E+02 0.0048 21.5 7.8 98 33-135 21-125 (146)
365 PF01713 Smr: Smr domain; Int 32.1 1.6E+02 0.0034 20.2 5.3 37 32-68 13-53 (83)
366 cd08192 Fe-ADH7 Iron-containin 31.6 4.1E+02 0.0088 24.3 9.4 80 30-110 8-89 (370)
367 cd08188 Fe-ADH4 Iron-containin 31.3 4.2E+02 0.0091 24.4 9.4 82 29-111 11-94 (377)
368 PF02601 Exonuc_VII_L: Exonucl 31.1 2.3E+02 0.005 25.3 7.5 55 46-100 14-70 (319)
369 cd04190 Chitin_synth_C C-termi 30.7 3.3E+02 0.0071 23.0 8.7 26 103-128 75-101 (244)
370 cd08551 Fe-ADH iron-containing 30.1 4.3E+02 0.0093 24.1 9.6 81 30-111 7-89 (370)
371 COG1636 Uncharacterized protei 30.0 1.5E+02 0.0032 24.4 5.2 106 20-132 2-113 (204)
372 COG1454 EutG Alcohol dehydroge 29.6 4.6E+02 0.01 24.3 9.0 77 29-110 12-94 (377)
373 cd08193 HVD 5-hydroxyvalerate 29.4 3.9E+02 0.0084 24.6 8.8 81 30-111 10-92 (376)
374 cd08194 Fe-ADH6 Iron-containin 29.4 4.5E+02 0.0098 24.1 9.6 81 30-111 7-89 (375)
375 PRK13010 purU formyltetrahydro 29.3 4.1E+02 0.0088 23.6 8.8 9 104-112 171-179 (289)
376 PLN02828 formyltetrahydrofolat 28.6 95 0.0021 27.2 4.3 9 104-112 149-157 (268)
377 PHA00673 acetyltransferase dom 27.9 79 0.0017 25.1 3.4 36 30-65 103-138 (154)
378 PF02641 DUF190: Uncharacteriz 27.6 1.1E+02 0.0023 22.2 3.8 28 27-54 15-42 (101)
379 PRK10624 L-1,2-propanediol oxi 27.0 5E+02 0.011 23.9 9.2 80 30-110 14-95 (382)
380 PRK06027 purU formyltetrahydro 26.6 4.5E+02 0.0098 23.2 8.7 12 104-115 167-179 (286)
381 PRK00286 xseA exodeoxyribonucl 26.6 3E+02 0.0066 25.9 7.7 54 46-99 135-190 (438)
382 cd07766 DHQ_Fe-ADH Dehydroquin 26.3 4.7E+02 0.01 23.4 9.3 102 30-135 7-110 (332)
383 PRK00923 sirohydrochlorin coba 25.9 1.1E+02 0.0025 22.9 3.9 23 30-52 44-66 (126)
384 PF10662 PduV-EutP: Ethanolami 25.7 1.2E+02 0.0027 23.7 4.0 33 33-65 107-142 (143)
385 PRK04946 hypothetical protein; 25.6 1E+02 0.0022 25.2 3.7 50 22-71 94-149 (181)
386 PRK09860 putative alcohol dehy 25.5 4.5E+02 0.0097 24.3 8.5 78 29-111 14-97 (383)
387 PF04519 Bactofilin: Polymer-f 25.5 1.1E+02 0.0023 22.0 3.6 45 282-327 36-85 (101)
388 TIGR01042 V-ATPase_V1_A V-type 24.9 3.9E+02 0.0084 26.4 8.0 37 30-67 238-274 (591)
389 PLN02573 pyruvate decarboxylas 24.8 3.8E+02 0.0083 26.4 8.3 45 20-64 3-49 (578)
390 COG1246 ArgA N-acetylglutamate 24.1 98 0.0021 24.5 3.2 27 30-56 83-109 (153)
391 KOG3857 Alcohol dehydrogenase, 23.5 5.8E+02 0.013 23.4 8.3 83 30-112 54-138 (465)
392 cd08185 Fe-ADH1 Iron-containin 23.1 5.9E+02 0.013 23.4 9.1 80 29-110 9-91 (380)
393 PF04392 ABC_sub_bind: ABC tra 23.0 5.1E+02 0.011 22.6 9.2 98 25-128 108-210 (294)
394 cd06431 GT8_LARGE_C LARGE cata 22.9 5.2E+02 0.011 22.7 13.7 71 104-182 100-171 (280)
395 COG0353 RecR Recombinational D 22.7 3.5E+02 0.0075 22.4 6.2 53 33-85 123-177 (198)
396 cd06432 GT8_HUGT1_C_like The C 22.4 5E+02 0.011 22.3 8.2 80 46-126 30-120 (248)
397 PRK13011 formyltetrahydrofolat 21.7 5.6E+02 0.012 22.6 8.3 9 104-112 167-175 (286)
398 TIGR00237 xseA exodeoxyribonuc 21.6 4.4E+02 0.0096 24.9 7.7 53 47-99 130-184 (432)
399 KOG2791 N-acetylglucosaminyltr 21.5 1.6E+02 0.0035 26.6 4.3 42 25-66 122-167 (455)
400 PF10150 RNase_E_G: Ribonuclea 21.5 1.4E+02 0.0031 26.1 4.2 55 22-76 81-135 (271)
401 KOG2882 p-Nitrophenyl phosphat 21.3 4.2E+02 0.0092 23.6 6.8 76 33-113 42-117 (306)
402 COG1570 XseA Exonuclease VII, 21.2 5.3E+02 0.011 24.4 7.8 62 46-107 135-198 (440)
403 PRK11557 putative DNA-binding 20.5 5.6E+02 0.012 22.1 11.2 91 34-135 118-208 (278)
404 PRK10146 aminoalkylphosphonic 20.2 1.7E+02 0.0036 22.0 4.0 37 30-66 94-130 (144)
405 cd03413 CbiK_C Anaerobic cobal 20.0 1.5E+02 0.0032 21.6 3.4 25 29-53 39-63 (103)
406 PHA01807 hypothetical protein 20.0 2.1E+02 0.0046 22.5 4.5 37 30-66 99-135 (153)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.1e-59 Score=396.96 Aligned_cols=324 Identities=52% Similarity=0.797 Sum_probs=290.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHH-HHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL-KEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~-~~~~~~~~~~v~~~~ 79 (331)
|+|+||.+|.|+||+|||..+|||++|++|+|||+|++++|.++|+++|++.+++..+.+..++ +.++..+++++.+..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999987555554 446677889999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
++++.|+++.+..+++.+-...+.+|+|+++|.+++.++++++++|.+++++++++ ++++++||++..|+++++|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 99999999999888888876554489999999999999999999999999999998 788999999999997799999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 236 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~ 236 (331)
|.|||+...++.+++|+|+|++++++.+...+.+++.+++|.++++.++++|.++|||.|+++|+||+++...+++....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999998999999999999999999998888899999999999999999999999999999999999999999988765
Q ss_pred ccCCc------------cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 237 NSSSK------------LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 237 ~~~~~------------i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..+.+ +.+.+.++.+|.|++|++||.+|+|+ +++.+++|++..+..++.++.|.. +++|.++.||
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~--~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~~~IG 326 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIE--DGVRLQDSTILGADYYETHSEISS-SIVGWNVPIG 326 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECCCceECCCcEec--CceEEEeeEEEccceechhHHHHh-hhcccccccc
Confidence 44333 34556667778888888888888888 888889999999999999999988 9999999999
Q ss_pred cccEE-cCcEEccCeEEccCccCC
Q 020113 305 DEVYS-NGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 305 ~~~~i-~~~~v~~~~~i~~~~~~~ 327 (331)
.++.| +++++|.+++|....+.+
T Consensus 327 ~~~~id~~a~lG~nV~V~d~~~vn 350 (371)
T KOG1322|consen 327 IWARIDKNAVLGKNVIVADEDYVN 350 (371)
T ss_pred CceEEecccEeccceEEecccccc
Confidence 99988 578899998888766655
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-55 Score=397.13 Aligned_cols=298 Identities=40% Similarity=0.661 Sum_probs=255.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||+|+||+|+|..+||||+||+|+|||+|++++|.++|++++++++++..+.+++++.+ +..++.++.++.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEec
Confidence 899999999999999999999999999999999999999999999999999999999999999997 3445788999999
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.||+++++++.+.+..+ +|++++||.+++.++.+++++|+++.+.+++. +.++..||++..+++.+++.+|
T Consensus 81 ~~~lGTag~l~~a~~~l~~~---~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhcCCC---cEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 99999999999999999762 99999999999999999999999997777776 5556789999988542699999
Q ss_pred eecCC--CCCCCeEEEEEEEEChhhHhhcc-cCCCCcccchHHHHHhcCc-EEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 158 VEKPK--NFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAAENK-LFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 158 ~ek~~--~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
.|||. ...++++++|+|+|++++|+.+. ....+++.++++.+++.+. ++++.++++|.|+++|+||++++..+++.
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99993 56689999999999999999764 5567777789999999998 99999999999999999999999999864
Q ss_pred hcc------------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccce
Q 020113 234 LQK------------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMT 295 (331)
Q Consensus 234 ~~~------------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~ 295 (331)
... ..+..+++++.|++++.|+++++||++|.|+ +++.|.+|+|+++|.||+++.|.+ |
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~Sii~~~~~i~~~~~i~~-s 314 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIG--NGVEIKNSIIMDNVVIGHGSYIGD-S 314 (358)
T ss_pred ccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEEC--CCcEEEeeEEEcCCEECCCCEEee-e
Confidence 321 2334456666666777777777777777777 667777777777777777777777 7
Q ss_pred EECCCcEECc
Q 020113 296 ILGEDVHVAD 305 (331)
Q Consensus 296 ~i~~~~~i~~ 305 (331)
+|+++|+||+
T Consensus 315 Ii~~~~~ig~ 324 (358)
T COG1208 315 IIGENCKIGA 324 (358)
T ss_pred EEcCCcEECC
Confidence 7777777774
No 3
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.2e-51 Score=377.96 Aligned_cols=317 Identities=24% Similarity=0.364 Sum_probs=233.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccC-------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE------- 72 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~------- 72 (331)
|+|||||||+|+||+|+|..+||||+|++|+ |||+|++++|.++|+++++|++++..+.+++|+.+ +.+|+
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-GSPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-CCcccccCCCCC
Confidence 7999999999999999999999999999999 89999999999999999999999999999999975 23333
Q ss_pred eEEE--EeeCCc---ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCc
Q 020113 73 IKIT--CSQETE---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKY 142 (331)
Q Consensus 73 ~~v~--~~~~~~---~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~ 142 (331)
+.+. +..+.+ +.|++++++.+++.+....+++|+|++||.+++.++.++++.|++.+++++++ .+++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 2232 333332 48999999999999964222389999999999999999999999888887766 2467889
Q ss_pred eEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-cc------CCCCcccchHHHHHhcC-cEEEEEeCceE
Q 020113 143 GVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL------KPTSIEKEVFPEIAAEN-KLFAMVLPGFW 214 (331)
Q Consensus 143 ~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~------~~~~~~~~~l~~l~~~~-~i~~~~~~~~~ 214 (331)
|++.+|++ ++|.++.|||..+.+++.++|+|+|+++++..+ .. ...++..++++.+++++ ++.+|.++++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99999887 899999999987778899999999999988543 21 12244568899988775 69999999999
Q ss_pred EecCCHHHHHHHHHHHHhhhccc----c------CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 215 MDIGQPKDYITGLRLYLDFLQKN----S------SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~l~~~~~~----~------~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
.|+++|++|+++++.++...... + ...+.+.++|++++.|. ++.||++|.|+ . .+.+|+||++|.
T Consensus 242 ~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~--~--~v~~s~ig~~~~ 316 (380)
T PRK05293 242 KDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLVVEGCVVY--G--TVEHSVLFQGVQ 316 (380)
T ss_pred EeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe-cCEECCCCEEc--c--eecceEEcCCCE
Confidence 99999999999999888653211 1 11122223333333331 33333333332 1 233456666666
Q ss_pred ECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
||++|+|.+ |+|+++|+|++++.|.+|+|++++.|+++..
T Consensus 317 I~~~~~i~~-svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 317 VGEGSVVKD-SVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred ECCCCEEEC-CEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 666666655 6666666666666665555555555555443
No 4
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-50 Score=375.06 Aligned_cols=321 Identities=20% Similarity=0.337 Sum_probs=250.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe-
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS- 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~- 78 (331)
|+|||||||.|+||+|||..+||||+|++|| |||+|+|++|.++|+++|++++++..+.+.+|+.......+....+.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999999 99999999999999999999999999999999974111001111122
Q ss_pred --eCC------cccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEE
Q 020113 79 --QET------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVV 145 (331)
Q Consensus 79 --~~~------~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v 145 (331)
.+. .+.|++++++.+++++.++..++|+|++||++++.++.+++++|.+++++++++ .+++..||++
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 111 258999999999999965432369999999999999999999999988888776 2466789999
Q ss_pred EEcCCcCceeEeeecCCCCC-------CCeEEEEEEEEChhhH-hhccc------CCCCcccchHHHHHhcCcEEEEEe-
Q 020113 146 VMEETTGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAAENKLFAMVL- 210 (331)
Q Consensus 146 ~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~l~~l~~~~~i~~~~~- 210 (331)
.+|++ +++..+.|||..+. +.++++|+|+|++++| +.+.. ...++..++++.+++++++++|.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99987 89999999986432 4799999999999986 44532 234566789999999999999976
Q ss_pred -----------CceEEecCCHHHHHHHHHHHHhhhccc------cC----C-ccCCCceEecc--eEEcCCcEECCCcEE
Q 020113 211 -----------PGFWMDIGQPKDYITGLRLYLDFLQKN------SS----S-KLATGSNIIGN--VLVHEGAKIGDGCLI 266 (331)
Q Consensus 211 -----------~~~~~~i~t~~d~~~a~~~~l~~~~~~------~~----~-~i~~~~~i~~~--~~i~~~~~i~~~~~I 266 (331)
.++|.|+++|++|+++++.+++..... .+ . ...+..++... ..+..++.||++|.|
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I 324 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSII 324 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEE
Confidence 589999999999999999999643211 00 0 11222222221 122346777777777
Q ss_pred CCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 267 GPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 267 ~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+ ++.|++|+||++|.||++|.|.+ |+|+++|+|++++.|.+|+|+++++|+++...
T Consensus 325 ~---~~~i~~svIg~~~~I~~~~~i~~-sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 325 S---GATVRNSVLSPNVVVESGAEVED-SVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred C---CeeeEcCEECCCCEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence 4 36777788888888888888887 88888888888888888888888888876543
No 5
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-51 Score=358.69 Aligned_cols=316 Identities=23% Similarity=0.401 Sum_probs=239.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc-----CeEE
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL-----EIKI 75 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~v 75 (331)
-|+|||+|+|+||.|||+.++||-+|++|| +||+++|.++.++|+.+|.|++.+....+.+|+.. +..| +-.+
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~-G~~w~l~~~~~~v 85 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR-GWPWDLDRKNGGV 85 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhC-CCccccccccCcE
Confidence 489999999999999999999999999999 89999999999999999999999999999999997 2222 2223
Q ss_pred EEeeC-------CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCce
Q 020113 76 TCSQE-------TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYG 143 (331)
Q Consensus 76 ~~~~~-------~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~ 143 (331)
.++.. ....|+++++++.+..+..-.+|+++++.||.+++.|+.++++.|.+.++++|++ .++++.||
T Consensus 86 ~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fG 165 (393)
T COG0448 86 FILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFG 165 (393)
T ss_pred EEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcC
Confidence 33331 1346899999999999987777799999999999999999999999999999999 34578999
Q ss_pred EEEEcCCcCceeEeeecCCC-CCCC-eEEEEEEEEChhhHhhc-c------cCCCCcccchHHHHHhcCcEEEEEeCceE
Q 020113 144 VVVMEETTGKVEKFVEKPKN-FVGN-KINAGIYLLNPSVLDRI-E------LKPTSIEKEVFPEIAAENKLFAMVLPGFW 214 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~l~~l-~------~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 214 (331)
++.+|++ +++.+|.|||.. +.++ ++++|+|+|+.++|..+ . ....+|..+++|.+++.+.+++|+++|||
T Consensus 166 im~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw 244 (393)
T COG0448 166 VMNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYW 244 (393)
T ss_pred ceEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchh
Confidence 9999999 999999999987 5554 89999999999988765 2 12356778899999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHhhhc------c----ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 215 MDIGQPKDYITGLRLYLDFLQ------K----NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~l~~~~------~----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
.||+|.++|++||+.+++.-. + ....+..|.+.+...+.+ .+|.|++||+|. + .|++|+|+.+++
T Consensus 245 ~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~---G-~V~nSVL~~~v~ 319 (393)
T COG0448 245 RDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIIS---G-TVENSVLFRGVR 319 (393)
T ss_pred hhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEE---e-EEEeeEEecCeE
Confidence 999999999999999997210 0 001111222222222222 244555555553 2 555555555555
Q ss_pred ECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
|+.+|.|.+ |+|..+|+||.||.|++++|..+++|++++.
T Consensus 320 I~~gs~i~~-svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 320 IGKGSVIEN-SVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred ECCCCEEEe-eEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 555555555 5555555555555555555555555554443
No 6
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.6e-48 Score=355.34 Aligned_cols=317 Identities=28% Similarity=0.437 Sum_probs=253.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|++++++++++ ..+.+++++.+ +..|+.++.++.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence 689999999999999999999999999999999999999999999999999998 77889999876 3456677777777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+++.+..+ +|++++||++++.++.++++.|++++++++++ ..++..|+++.++++ +++..+
T Consensus 80 ~~~~G~~~al~~a~~~l~~~---~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcCCC---CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 77899999999999998543 89999999999999999999999988888777 466778999888765 789999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCC-----CCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.+++.++|+|+|++.+++.+.... ...-.++++.+++++ ++++|.++++|.|++||+||+++++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 9999877789999999999998887773211 111246788888876 5999999999999999999999999999
Q ss_pred hhhcccc-----CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEc-----cceEECCCc
Q 020113 232 DFLQKNS-----SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVE-----NMTILGEDV 301 (331)
Q Consensus 232 ~~~~~~~-----~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~-----~~~~i~~~~ 301 (331)
.+..... .+.+.+.+.|++++.| .++.|+.+|.|| ++|.|.+|+|+++|.||++|.|+ + |+|++++
T Consensus 236 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig--~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~-s~i~~~~ 311 (353)
T TIGR01208 236 DEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIG--EDCIIENSYIGPYTSIGEGVVIRDAEVEH-SIVLDES 311 (353)
T ss_pred hhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCcEEC--CCCEEcCcEECCCCEECCCCEEeeeEEEe-eEEcCCC
Confidence 8643221 1222333333333433 244444455556 66666666666666666666654 5 8888899
Q ss_pred EECcc-cEEcCcEEccCeEEccCccCC
Q 020113 302 HVADE-VYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 302 ~i~~~-~~i~~~~v~~~~~i~~~~~~~ 327 (331)
+|+.+ +.+.+++++++++|+++...+
T Consensus 312 ~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 312 VIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred EEcCCcceeecCEEcCCCEECCCcccc
Confidence 99888 488889999999999887655
No 7
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=7.5e-49 Score=358.83 Aligned_cols=317 Identities=23% Similarity=0.387 Sum_probs=262.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc---CeEEEEe
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCS 78 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~ 78 (331)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++.|.++|+++|+|++++..+.+.+++.+..... ...+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 8999999999999999999999998888999987511100 1112221
Q ss_pred e-------CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceEEE
Q 020113 79 Q-------ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGVVV 146 (331)
Q Consensus 79 ~-------~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~v~ 146 (331)
. ++.+.|++++++.+++.+.....++|++++||++++.++.++++.|.+++++++++ . +++..|+++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 1 12357999999999999864333489999999999999999999998888777666 2 3567899999
Q ss_pred EcCCcCceeEeeecCCCCCCC-------eEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcCcEEEEEeCc
Q 020113 147 MEETTGKVEKFVEKPKNFVGN-------KINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAENKLFAMVLPG 212 (331)
Q Consensus 147 ~d~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~~i~~~~~~~ 212 (331)
+|++ +++..+.|||..+... ++++|+|+|+++++. .+.. ...++..++++.+++++++++|.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9877 8999999998655555 899999999999874 3322 23345568899999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHhhhccc-----------cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcC
Q 020113 213 FWMDIGQPKDYITGLRLYLDFLQKN-----------SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGW 281 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~~~~~-----------~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~ 281 (331)
+|.|++|+++|+++++.++++.... ....+.++++|++.+.+ ++++||++|+|+ .+ +|++|+|++
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~--~~-~v~~s~i~~ 315 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIIS--GA-TVSHSVLGI 315 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEEC--CC-EEEccEECC
Confidence 9999999999999999999754211 11245677888888766 479999999998 65 889999999
Q ss_pred CCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 282 HSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 282 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
+|.||++|+|.+ |+|++++.||+++.|.+|+|+++++|+++..
T Consensus 316 ~~~I~~~~~i~~-sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 316 RVRIGSGSTVED-SVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred CCEECCCCEEee-eEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 999999999998 9999999999999999999999999998764
No 8
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.1e-48 Score=361.09 Aligned_cols=320 Identities=23% Similarity=0.350 Sum_probs=250.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcc-hHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hhh---ccCeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEK---KLEIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~---~~~~~v 75 (331)
|+|||||||.|+||+|+|..+||+|+|++|+| ||+|++++|.++|++++++++++..+.+.+|+.+ |.. ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 47999999999999999999999999999996 9999999999999999999999999999999975 210 011112
Q ss_pred EEe-------eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCce
Q 020113 76 TCS-------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYG 143 (331)
Q Consensus 76 ~~~-------~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~ 143 (331)
.+. .++.+.|++++++.+++.+....+++|+|++||.+++.++.+++++|.+++++++++ + +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 211 122358999999999999964323389999999999999999999999999888777 2 5678999
Q ss_pred EEEEcCCcCceeEeeecCCCC-------CCCeEEEEEEEEChhhHh-hccc------CCCCcccchHHHHHhcCcEEEEE
Q 020113 144 VVVMEETTGKVEKFVEKPKNF-------VGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAAENKLFAMV 209 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~l~~l~~~~~i~~~~ 209 (331)
++.+|++ +++..|.|||..+ .+.++++|+|+|++++|. .+.. ...++..++++.+++++++++|.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999987 8999999998643 257999999999999864 4421 22355678999999999999999
Q ss_pred eC-----------ceEEecCCHHHHHHHHHHHHhhhccc----------cCCccCCCceE-e--cceE-EcCCcEECCCc
Q 020113 210 LP-----------GFWMDIGQPKDYITGLRLYLDFLQKN----------SSSKLATGSNI-I--GNVL-VHEGAKIGDGC 264 (331)
Q Consensus 210 ~~-----------~~~~~i~t~~d~~~a~~~~l~~~~~~----------~~~~i~~~~~i-~--~~~~-i~~~~~i~~~~ 264 (331)
+. +||.|+++|++|+++++.++...... ......+.+.+ . .++. +..+++||++|
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~ 334 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGC 334 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCc
Confidence 85 59999999999999999998632100 00111122211 1 1110 12377888888
Q ss_pred EECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 265 LIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 265 ~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
.| ++|.|++|+|+++|.||++|.|.+ |+|+++|.||+++.|.+|+|+++++|+++..
T Consensus 335 ~i---~~~~i~~svi~~~~~I~~~~~i~~-svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 335 II---SGAVVRRSVLFSRVRVNSFSNVED-SVLLPDVNVGRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred EE---cCccccCCEECCCCEECCCCEEee-eEEcCCCEECCCCEEeeEEECCCCEECCCCE
Confidence 77 347778889999999999999887 8999999999999888888888888776644
No 9
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-48 Score=361.14 Aligned_cols=304 Identities=22% Similarity=0.363 Sum_probs=236.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh--hcc--C-eE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE--KKL--E-IK 74 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~--~~~--~-~~ 74 (331)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+.. ..+ + ..
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 5799999999999999999999999999999 9999999999999999999999998899999997511 111 1 12
Q ss_pred EEEeeCC--c---ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceE
Q 020113 75 ITCSQET--E---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGV 144 (331)
Q Consensus 75 v~~~~~~--~---~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~ 144 (331)
+....+. . ..|++++++.+++.+....+++|+|++||++++.++.++++.|.+.+++++++ . +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 2222221 1 27999999999999864333489999999999999999999999988888776 2 34678999
Q ss_pred EEEcCCcCceeEeeecCCCC---------------------CCCeEEEEEEEEChhhHhhc-cc--CCCCcccchHHHHH
Q 020113 145 VVMEETTGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRI-EL--KPTSIEKEVFPEIA 200 (331)
Q Consensus 145 v~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~--~~~~~~~~~l~~l~ 200 (331)
+.+|++ +++..+.|||... ...++++|+|+|++++|..+ .. ...++..++++.++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999987 8999999998632 23589999999999999654 33 23456678999998
Q ss_pred hcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc-----------------ccC----------CccCCCceEecceE
Q 020113 201 AENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK-----------------NSS----------SKLATGSNIIGNVL 253 (331)
Q Consensus 201 ~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~-----------------~~~----------~~i~~~~~i~~~~~ 253 (331)
+.+++++|.++++|.|++||++|+++++.++..... .++ ..|+++|.| +++.
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~ 321 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNCS 321 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCcE
Confidence 888999999999999999999999999998832110 011 124555555 4555
Q ss_pred EcCCcEECCCcEECCCCCceEeCCEEcC-------------------CCEECCCcEEccceEECCCcEECcccEEc
Q 020113 254 VHEGAKIGDGCLIGPDKHACISSSIIGW-------------------HSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 254 i~~~~~i~~~~~I~~~~~~~i~~s~i~~-------------------~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
|+ +|+||++|.|| ++++|++|+|++ +|.||.+|+|.+ |+|+++|.||+++.+.
T Consensus 322 i~-~svi~~~~~Ig--~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 322 IH-HSVLGIRSRIE--SGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIV 393 (429)
T ss_pred EE-EEEEeCCcEEC--CCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEe
Confidence 54 56777777777 677777777765 577777777777 7777777777777774
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=6.1e-49 Score=360.19 Aligned_cols=319 Identities=19% Similarity=0.294 Sum_probs=247.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChH-HHHHHHHHhhhccCeEE---
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKI--- 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v--- 75 (331)
|+|||||+|+|+||+|||..+||||+||+|| |||+|++++|.++|+++|++++++..+ .+++|+.+ +..|+.+.
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999876 99999975 23344332
Q ss_pred ---EEee-CCccc--CChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ec--CCCCc-e
Q 020113 76 ---TCSQ-ETEPL--GTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VD--EPSKY-G 143 (331)
Q Consensus 76 ---~~~~-~~~~~--G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~--~~~~~-~ 143 (331)
.+.. +.... |+++++..+++.+....+++|+|++||++++.++.+++++|.+.+++++++ +. ++..| +
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 2222 22232 566678888888853222389999999999999999999999999988877 22 45667 4
Q ss_pred EEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHh-hccc----CCCCcccchHHHHHhcCcEEEEEeCceEEecC
Q 020113 144 VVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLD-RIEL----KPTSIEKEVFPEIAAENKLFAMVLPGFWMDIG 218 (331)
Q Consensus 144 ~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~-~l~~----~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~ 218 (331)
++..+++ +++..+.+++.......+++|+|+|+++++. .+.. .....-.++++.++++++++++.++++|.|++
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 5567665 7787765433333346789999999998764 3321 11112236778887778899999999999999
Q ss_pred CHHHHHHHHHHHHhhhcccc-----C----C--ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECC
Q 020113 219 QPKDYITGLRLYLDFLQKNS-----S----S--KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGR 287 (331)
Q Consensus 219 t~~d~~~a~~~~l~~~~~~~-----~----~--~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~ 287 (331)
||++|+++++.+++...... . . .+.+.+.|++++.| ++|+||++|.|+ +.|++|+|+++|.||+
T Consensus 241 t~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~----~~v~~s~i~~~~~I~~ 315 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE----GKVENSILSRGVHVGK 315 (369)
T ss_pred CHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe----eEEeCCEECCCCEECC
Confidence 99999999999887642110 1 1 12255666666666 467777888876 3578999999999999
Q ss_pred CcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 288 WARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 288 ~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
+|.|.+ |+|++++.|++++.+.+|+|+++++|+++...+
T Consensus 316 ~~~i~~-sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 316 DALIKN-CIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CCEEEe-eEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 999999 999999999999999999999999999876544
No 11
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=7.3e-47 Score=352.23 Aligned_cols=304 Identities=22% Similarity=0.343 Sum_probs=236.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh---c-----c
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK---K-----L 71 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~---~-----~ 71 (331)
|+|||||||+|+||+|||..+||||+|++|+ |||+|+|++|.++|++++++++++..+.+.+|+.+... . .
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999997 99999999999999999999999999999999985110 0 0
Q ss_pred CeEEEEeeCC-----cccCChHHHHHHHhhccCCC---CCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cC
Q 020113 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DE 138 (331)
Q Consensus 72 ~~~v~~~~~~-----~~~G~~~al~~~~~~~~~~~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~ 138 (331)
...+.+..+. .+.|++++++.++..+.+.. .++|+|++||++++.++.+++++|.+++++++++ + ++
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1233232222 36899999999887775321 2399999999999999999999999999988877 2 24
Q ss_pred CCCceEEEEcCCcCceeEeeecCCCCC---------------------CCeEEEEEEEEChhhHhhc-cc---CCCCccc
Q 020113 139 PSKYGVVVMEETTGKVEKFVEKPKNFV---------------------GNKINAGIYLLNPSVLDRI-EL---KPTSIEK 193 (331)
Q Consensus 139 ~~~~~~v~~d~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~ 193 (331)
+..|+++.+|++ +++.++.|||..+. .+++++|+|+|++++|..+ +. ...++..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 689999999887 89999999986442 3799999999999998644 21 2235667
Q ss_pred chHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc------c----------cC----------CccCCCc
Q 020113 194 EVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK------N----------SS----------SKLATGS 246 (331)
Q Consensus 194 ~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~------~----------~~----------~~i~~~~ 246 (331)
++++.++.++ ++++|.++++|.|+++|++|+++++.++..... . ++ ..|+++|
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~ 322 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGC 322 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCc
Confidence 8899999885 799999999999999999999999999864210 0 00 1244555
Q ss_pred eEecceEEcCCcEECCCcEECCCCCceEeCCEEcC----------------C---CEECCCcEEccceEECCCcEECccc
Q 020113 247 NIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGW----------------H---STVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~----------------~---~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
.|+ ++.|+ +|+|+++|.|+ ++|+|.+|+++. + +.||.+|.|++ ++|+++|.||+++
T Consensus 323 ~I~-~~~I~-~svI~~~~~Ig--~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~ 397 (436)
T PLN02241 323 FLR-ECKIE-HSVVGLRSRIG--EGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNV 397 (436)
T ss_pred EEc-CeEEE-eeEEcCCCEEC--CCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcc-eEecCCCEECCCc
Confidence 555 55553 56677777777 777777766644 2 36777777776 7777777777777
Q ss_pred EEc
Q 020113 308 YSN 310 (331)
Q Consensus 308 ~i~ 310 (331)
.+.
T Consensus 398 ~i~ 400 (436)
T PLN02241 398 VII 400 (436)
T ss_pred EEe
Confidence 764
No 12
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-46 Score=312.05 Aligned_cols=312 Identities=35% Similarity=0.646 Sum_probs=257.2
Q ss_pred eEEEEeCC--CCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEe
Q 020113 2 KALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 2 ~avIlA~G--~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+||||-+| +|+||+||+-+.||||+|++|+|||.|.|+++.+ .|..+|+++.-++.+.+.+|+......+.+.+.|+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL 83 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL 83 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence 69999998 7899999999999999999999999999999999 57999999998888899999999888888899999
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCcCc
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~~~ 153 (331)
.++.+.|+++.+++-++.+-..+++.++|+++|.-+..+++++++.|+..+..++++ .++..+||-+.-|+.|++
T Consensus 84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e 163 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE 163 (407)
T ss_pred ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence 999999999999999999987777799999999999999999999999999999888 456789999999998999
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhccc--------------------CC---CCcccchHHHHHhcCcEEEEEe
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL--------------------KP---TSIEKEVFPEIAAENKLFAMVL 210 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~--------------------~~---~~~~~~~l~~l~~~~~i~~~~~ 210 (331)
++++.|||.+..++.+++|+|+|+++.|+.+.+ .+ -++++|+++-|+.++++++|..
T Consensus 164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t 243 (407)
T KOG1460|consen 164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET 243 (407)
T ss_pred eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence 999999999999999999999999999864410 01 1346788888888999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHhhhccccCCccC--CC--ceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEEC
Q 020113 211 PGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLA--TG--SNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVG 286 (331)
Q Consensus 211 ~~~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i~--~~--~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig 286 (331)
.++|-.+-|+-+-+.+++.+|++++...+..+. ++ +.|-++++|++++.+.+.+.|||| ..||.+++||
T Consensus 244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPN-------VSIga~vrvg 316 (407)
T KOG1460|consen 244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPN-------VSIGANVRVG 316 (407)
T ss_pred ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCC-------ceecCCceec
Confidence 999999999999999999999987655444332 12 346666666666666666666644 4555666666
Q ss_pred CCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 287 RWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 287 ~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
++++|++ |+|.++|+|.+|+++-+|+|+=+++||
T Consensus 317 ~GvRl~~-sIIl~d~ei~enavVl~sIigw~s~iG 350 (407)
T KOG1460|consen 317 PGVRLRE-SIILDDAEIEENAVVLHSIIGWKSSIG 350 (407)
T ss_pred CCceeee-eeeccCcEeeccceEEeeeeccccccc
Confidence 6666666 666666666666666665555555555
No 13
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-45 Score=305.60 Aligned_cols=273 Identities=30% Similarity=0.473 Sum_probs=225.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|||||||||.||||+|+|...||+|+|+.+||||+|+++.|..+|+++|.|++++ +...+++++.+ +++|+++++|..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 8999999999999999999999999999999999999999999999999999987 45788888877 788999999999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
|+++.|.++|++.+.+++.++ +|++..||.++..++.++++.+.++..+++++ +.+|++||++.+|++ +++.+
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999765 99999999987779999999999988888877 899999999999988 89999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhccc-CCC-Ccc---cchHHHHHhcCcE-EEEEeCceEEecCCHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIEL-KPT-SIE---KEVFPEIAAENKL-FAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~-~~~-~~~---~~~l~~l~~~~~i-~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
+.|||..|.|+++-+|+|+|++.+++.++. ++. ..| .+.++.++++|.. ......|.|.|.+|++||++|++..
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 999999999999999999999999998743 222 222 4678999999974 4555678999999999999999988
Q ss_pred HhhhccccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECC
Q 020113 231 LDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGR 287 (331)
Q Consensus 231 l~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~ 287 (331)
+...+......+.+++.+. +.+|... ++|+ ..+.+.+|.+|+-..++.
T Consensus 236 ~~~~~~~G~~~~~~~~~~~-~~~i~~~------~~~~--~~~~l~~~~~G~y~~~~~ 283 (286)
T COG1209 236 RTVSKRQGFKIACPEEIAW-NGWIDGP------GLIG--LASQLEKSGYGQYLLELL 283 (286)
T ss_pred HHHHhhcCCEEeChhHEEE-ecEEech------Hhhc--cccchhhcCcchhhhhhh
Confidence 8744433333344444444 4444433 3334 334444455655554443
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.6e-43 Score=330.70 Aligned_cols=313 Identities=23% Similarity=0.378 Sum_probs=252.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.|.++|++++++++++..+.+.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999998888888888651 13556566
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.++... ++|++++||. +.+.+++++++.|.+.++++++. ..++..|+.+.+|++ +++.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~~-~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGFS-GTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhccC-CcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 778899999999999986422 3899999998 45677999999998877777766 456778899888887 8999
Q ss_pred EeeecCCC----CCCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||.. ..++++++|+|+|+++.+ +.+.. . ......++++.+++++ ++.+|+++++ |.++++|+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 99987632 124789999999999864 43421 1 1112246888898887 5999999887 99999999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
+|+++++.++.+... .....|++++.|++++.|+++++||++|.|+ .+++|.+|+||++|.
T Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~--~~~~I~~~~Ig~~~~ 311 (459)
T PRK14355 234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIE--QGVVIKGCRIGDDVT 311 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEEC--CCCEEeCCEEcCCCE
Confidence 999998866654311 1123456777777888888888888899998 889999999999999
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCccC
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIVN 326 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~ 326 (331)
|++++++.+ ++|++++.||+++.+. ++.|+++++|+.++..
T Consensus 312 I~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~ 353 (459)
T PRK14355 312 VKAGSVLED-SVVGDDVAIGPMAHLRPGTELSAHVKIGNFVET 353 (459)
T ss_pred ECCCeEEeC-CEECCCCEECCCCEECCCCEeCCCCEECCCccc
Confidence 999999988 9999999999999885 7888888888776543
No 15
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-44 Score=310.93 Aligned_cols=320 Identities=22% Similarity=0.366 Sum_probs=245.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhh--ccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEK--KLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~--~~~~~v~~ 77 (331)
|||||+|+|.|+||.-++.+.|||||||+|+|||+|+|++|.++|+++++|++.++ ...++..+.+... .....+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 58999999999999999999999999999999999999999999999999999874 4677888765221 11122322
Q ss_pred ee-CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-------e-------cCCCCc
Q 020113 78 SQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-------V-------DEPSKY 142 (331)
Q Consensus 78 ~~-~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-------~-------~~~~~~ 142 (331)
.. .....|++++++.....+..+ +||+++||.+++.++..+++.|+..++...++ . +....+
T Consensus 90 p~~~~~d~gtadsLr~Iy~kikS~---DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKIKSE---DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhhccC---CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 22 223669999999999999875 89999999999999999999999877765554 1 111234
Q ss_pred eEEEEcCCcCceeEeeec-----C------------C-CCCCCeEEEEEEEEChhhHhhcc--cCCCCcccchHHHHHhc
Q 020113 143 GVVVMEETTGKVEKFVEK-----P------------K-NFVGNKINAGIYLLNPSVLDRIE--LKPTSIEKEVFPEIAAE 202 (331)
Q Consensus 143 ~~v~~d~~~~~v~~~~ek-----~------------~-~~~~~~~~~Giy~~~~~~l~~l~--~~~~~~~~~~l~~l~~~ 202 (331)
.++..++.|+|+...... | . +..+++.++++|+|+.++++.|. ....+|..+++|+++++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 566667766665544321 1 1 12367899999999999999995 45677888888887654
Q ss_pred Cc---------------------------------EEEEEe--CceEEecCCHHHHHHHHHH-HHhhhcc---------c
Q 020113 203 NK---------------------------------LFAMVL--PGFWMDIGQPKDYITGLRL-YLDFLQK---------N 237 (331)
Q Consensus 203 ~~---------------------------------i~~~~~--~~~~~~i~t~~d~~~a~~~-~l~~~~~---------~ 237 (331)
+. +++|.. ...+.+++|.-.|+++|+. .+.++.. .
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~ 326 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVK 326 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhh
Confidence 32 333443 3458899999999999952 2223211 1
Q ss_pred cCCccCCCceEecceEEcC-----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 238 SSSKLATGSNIIGNVLVHE-----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
..+-++..+.+++++.|++ .++||.+|.|| ++++|.+|++++|+.||++|.|.+ |+||.+++||+++.+++|
T Consensus 327 ~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig--~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 327 KVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIG--ERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred heeccchhhccCCCceecccceeeeeeecCCcccc--CCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeee
Confidence 1133556666666666664 67899999999 999999999999999999999999 999999999999999999
Q ss_pred EEccCeEEccCccC
Q 020113 313 VVLPHKEIKSSIVN 326 (331)
Q Consensus 313 ~v~~~~~i~~~~~~ 326 (331)
+|+++.++.+..+.
T Consensus 404 ~Ig~~yvVeak~~~ 417 (433)
T KOG1462|consen 404 IIGPGYVVEAKGKH 417 (433)
T ss_pred EecCCcEEcccccc
Confidence 99999999944433
No 16
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.6e-43 Score=307.55 Aligned_cols=312 Identities=27% Similarity=0.406 Sum_probs=243.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||+|+||.. .+||-|-|++||||++|+++.....+.+++++|+++..+.+++.+.+. ..+.++.|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence 5799999999999998 899999999999999999999999999999999999999999988862 14778889
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
.+++||++|++++++.+.+..+.++||++||. +....++++++.|.+.++.++++ .++|..||.+..+++ +.|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999554434799999999 45567999999999999988888 789999999999988 8999
Q ss_pred EeeecCC----CCCCCeEEEEEEEEChhhHhhc----ccCCCCccc---chHHHHHhcCc-EEEEEeCc--eEEecCCHH
Q 020113 156 KFVEKPK----NFVGNKINAGIYLLNPSVLDRI----ELKPTSIEK---EVFPEIAAENK-LFAMVLPG--FWMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l----~~~~~~~~~---~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~ 221 (331)
.+.|..+ +.....+++|+|+|+...|..+ .+++...|+ |++..+..++. +.++..+. ....+++-.
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 9988644 2345799999999999755433 455556665 45666666654 77777754 377899999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCC---------------
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD--------------- 269 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~--------------- 269 (331)
++.++.+.+..+.+. ....++++++.|.+++++..+++||++|+|||.
T Consensus 234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~ 313 (460)
T COG1207 234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK 313 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence 999998888776521 122345666666666666556666666666533
Q ss_pred CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 270 KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 270 ~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
..|+|++|.|+++|.||++++|++++.|+++++||..++++++.|+.++..+
T Consensus 314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~ 365 (460)
T COG1207 314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAG 365 (460)
T ss_pred ecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCcccc
Confidence 2355556677777777777777777777777777777777777777554433
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-42 Score=325.78 Aligned_cols=311 Identities=20% Similarity=0.309 Sum_probs=247.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.|.++|++++++++++..+.+++++.. ..+.++.+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVAFARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcEEecC
Confidence 6899999999999997 58999999999999999999999999999999999888888888753 23555666
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+....+ +|++++||+ +.+.+++++++.|.+.+++++++ ++++..||++.+|++ +++.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~~-~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGDA-DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCCC-cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 7788999999999998853222 799999998 55677999999999888888776 567788999999987 8999
Q ss_pred EeeecCCCCC----CCeEEEEEEEECh---hhHhhcccCCC---CcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNP---SVLDRIELKPT---SIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYI 224 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~---~~l~~l~~~~~---~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~ 224 (331)
+|.|||..+. ++++++|+|+|++ ++++.+..... .+..++++.+++++ ++.+|++.++|-.++.-.+|.
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 9999976432 4579999999995 45555533211 12247888888887 499999887766666555554
Q ss_pred HHHHH-HHhh-hc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 225 TGLRL-YLDF-LQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 225 ~a~~~-~l~~-~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
.+++. ++.+ .. ..++..|++++.|+++++|++++.||++|.|+ ++|.|++|+|+++|.|
T Consensus 237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~--~~~~i~~svI~~~~~I 314 (481)
T PRK14358 237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG--AYSVVTDSVLHEGAVI 314 (481)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC--CCCEEeeeEECCCCEE
Confidence 44432 2222 10 12344577888899999998889999999999 8899999999999999
Q ss_pred CCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 286 GRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
+++++|.+ ++||+++.|++++.+. +++|++++.|++.+.
T Consensus 315 ~~~~~i~~-~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 315 KPHSVLEG-AEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred eecceecC-CeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 99999987 9999999999999885 688888888887654
No 18
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.2e-42 Score=322.15 Aligned_cols=309 Identities=19% Similarity=0.316 Sum_probs=231.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.|||||||.|+||+. ..||+|+|++|+|||+|++++|.+.+++++++++++..+.+++++.+ ..+.++.+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~~~~v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------EDARFVLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cCceEEEc
Confidence 4799999999999974 78999999999999999999999999999999999887777777653 12445556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+.+.|++++++.+++.+.....+++++++||+ +...+++.+++.+. ++++++. +.++..|+.+.. ++ +++.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 67789999999999998643234899999998 44566899998875 4455555 667888998876 45 8999
Q ss_pred EeeecCCC------CCCCeEEEEEEEEChhhHhhc-c---cCC---CCcccchHHHHHhcC-cEEEEEeCc--eEEecCC
Q 020113 156 KFVEKPKN------FVGNKINAGIYLLNPSVLDRI-E---LKP---TSIEKEVFPEIAAEN-KLFAMVLPG--FWMDIGQ 219 (331)
Q Consensus 156 ~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l-~---~~~---~~~~~~~l~~l~~~~-~i~~~~~~~--~~~~i~t 219 (331)
.+.|||.. +.++++++|+|+|+++.++.+ + ... .....++++.+.+.+ ++.++.+.+ .|.+++|
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998652 346788999999999987644 1 111 122346778877766 588888865 5799999
Q ss_pred HHHHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC
Q 020113 220 PKDYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH 282 (331)
Q Consensus 220 ~~d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~ 282 (331)
|+||.+++..+..+... .+...+++++.|.+++.|++++.||++|.|+ .+|.|++|+||++
T Consensus 233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~i~~~ 310 (456)
T PRK14356 233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIH--SHCWLRDAVVSSG 310 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEEC--CCeEEEeeEECCC
Confidence 99999988776655321 1223455555555556666677788888888 6788877888888
Q ss_pred CEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 283 STVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 283 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
|.|+++|.|.+ |+||++|.||+++.|. +++|++++.|+.++.
T Consensus 311 ~~I~~~~~i~~-~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~ 353 (456)
T PRK14356 311 ATIHSFSHLEG-AEVGDGCSVGPYARLRPGAVLEEGARVGNFVE 353 (456)
T ss_pred CEEeeeEEEcc-cceecccEECCceEECCCCEECCCCEecCCce
Confidence 88887777766 7777777777777775 666666666665543
No 19
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-41 Score=320.19 Aligned_cols=308 Identities=19% Similarity=0.292 Sum_probs=227.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|++++++++++..+.+.+++.+.. ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4699999999999997 6899999999999999999999999999999999988788888876521 23445566
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+.+.|++++++.+++.+.....++|++++||+ +...++.++++.|.+.++.+++. ..++..|+.+..+++ +++.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 77889999999999998542223799999998 34567999999998877776666 567888999888877 8999
Q ss_pred EeeecCCCCC----CCeEEEEEEEEChhhHhhc-c---cC---CCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNPSVLDRI-E---LK---PTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDY 223 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~~~l~~l-~---~~---~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~ 223 (331)
++.|||.... .+++++|+|+|+++.|..+ . .. ......++++++++.+ ++++|+++++|.|+++++.+
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 9999987432 4578999999999988553 1 11 1122357889999887 69999999999999999887
Q ss_pred ------HHHHHHHHhhhcc-------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCC--
Q 020113 224 ------ITGLRLYLDFLQK-------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWH-- 282 (331)
Q Consensus 224 ------~~a~~~~l~~~~~-------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~-- 282 (331)
+.+++.++..+.+ ..+..|++++.|++++.|+++++||++|.|+ .+++|++|+||++
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~--~~~~i~~~~Ig~~~~ 314 (482)
T PRK14352 237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVG--PDTTLTDVTVGEGAS 314 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEEC--CCCEEecCEECCCCE
Confidence 5556555554322 1234567777777777777777777777777 5566665555554
Q ss_pred --------------CEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 283 --------------STVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 283 --------------~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
|.||+++.+..+++|++++.||.++.+++++|++++
T Consensus 315 i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~ 364 (482)
T PRK14352 315 VVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGT 364 (482)
T ss_pred EeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCc
Confidence 444555555444555555555544444444444433
No 20
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=6.7e-41 Score=315.49 Aligned_cols=307 Identities=25% Similarity=0.389 Sum_probs=233.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|+++++++++++.+.+++++.++ + +.+..+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~--i~~~~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----D--VNWVLQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----C--cEEEEc
Confidence 8999999999999997 789999999999999999999999999999999998888888887753 3 334445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+..+ ++|+++.||. +...++..+++.|.+.+ ++++ .+++..|+.+.+|++ +++.
T Consensus 72 ~~~~G~~~ai~~a~~~l~~~--~~~lv~~~D~p~i~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcCCC--CcEEEEECCcCCcCHHHHHHHHHHHhhCC--EEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 56679999999999998643 2899999998 45567999999886643 4444 456677999888877 8899
Q ss_pred EeeecCCCC----CCCeEEEEEEEEChhhHhh-ccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKNF----VGNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||... ...++++|+|+|+++++.. ++. . ...+..++++.+++++ ++.+|+++++ |.++++|+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 999987532 2357899999999998533 322 1 1111246788888886 5999999887 99999999
Q ss_pred HHHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCE
Q 020113 222 DYITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHST 284 (331)
Q Consensus 222 d~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ 284 (331)
+|.+++..+..+.. ...+..+++++.|+++++|++++.||++|.|+ ++|.|.+++|+++|.
T Consensus 227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~i~~~~i~~~~~ 304 (451)
T TIGR01173 227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIG--PGCVIKNSVIGSNVV 304 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEEC--CCcEEeeeEecCCCE
Confidence 99888765544221 12234467778888888888888888888888 667777777777777
Q ss_pred ECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 285 VGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 285 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
|+++|.|.+ ++|+++|.||+++.|. +++|++++.|++++
T Consensus 305 I~~~~~i~~-~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 305 IKAYSVLEG-SEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred EeeecEEec-ccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 777777766 7777777777766664 45565555555443
No 21
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=6.8e-41 Score=288.08 Aligned_cols=230 Identities=72% Similarity=1.208 Sum_probs=205.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+++.++....++.+.+..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999889999998764456677777666
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+...+....+ +|++++||.+++.++.++++.|++++++++++ .++++.|+++.+|+++++|.++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~~-~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~ 159 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDDE-PFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF 159 (233)
T ss_pred CCCCccHHHHHHHHHHhccCCC-CEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence 7788999999999999965222 89999999999999999999999999988877 4566789999998722899999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.++++++|+|+|++++++.+.....+.+.++++.+++++++.+|+++++|.|++||++|++|++.+|
T Consensus 160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998777899999999999999998866556677889999999999999999999999999999999998764
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-40 Score=302.61 Aligned_cols=320 Identities=20% Similarity=0.332 Sum_probs=248.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH--hhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~~~v~~~ 78 (331)
.|||++|.-+.+||.|+|...|++|||++|.|||+|+|++|.++|+.+++++++.+..++.+|+++ |...+...+..+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999997 555555444444
Q ss_pred eCCcccCChHHHHHHHh--hccCCCCCcEEEEeCCeeccccHHHHHHHHhhcC-----CceEEEecCC-----CCceEEE
Q 020113 79 QETEPLGTAGPLALARD--KLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRG-----GEASIMVDEP-----SKYGVVV 146 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~--~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~-----~~~~i~~~~~-----~~~~~v~ 146 (331)
........+++++..-+ .+.. +|++++||++++.+|.+++++|++++ +-+||+..+. ..-..+.
T Consensus 105 ~s~~~~S~GDamR~id~k~litg----DFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~a 180 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQLITG----DFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIA 180 (673)
T ss_pred cCCCcCcHHHHHHHHHhcceeec----ceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEE
Confidence 44444555566554433 3332 99999999999999999999996543 3356662222 2334677
Q ss_pred EcCCcCceeEeeecC--C----------------CCCCCeEEEEEEEEChhhHhhcccCC-CCcccchHHHHHhc----C
Q 020113 147 MEETTGKVEKFVEKP--K----------------NFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAAE----N 203 (331)
Q Consensus 147 ~d~~~~~v~~~~ek~--~----------------~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~l~~l~~~----~ 203 (331)
+|..|.++..+.+.. . ....++.+++|-+|++.++..|.++. +....+++..++.. .
T Consensus 181 vd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~ 260 (673)
T KOG1461|consen 181 VDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY 260 (673)
T ss_pred EcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence 788778999887511 0 11257899999999999999996542 22334555544432 3
Q ss_pred cEEEEEeCc--eEEecCCHHHHHHHHHHHHhhhc-----------------cccCCccCCCceEecceEEcCCcEECCCc
Q 020113 204 KLFAMVLPG--FWMDIGQPKDYITGLRLYLDFLQ-----------------KNSSSKLATGSNIIGNVLVHEGAKIGDGC 264 (331)
Q Consensus 204 ~i~~~~~~~--~~~~i~t~~d~~~a~~~~l~~~~-----------------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~ 264 (331)
+|+++..+. |..++.+...|...++.+++||. .+...+-++.+.+...+.++.+++||.++
T Consensus 261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT 340 (673)
T KOG1461|consen 261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGT 340 (673)
T ss_pred eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccc
Confidence 688888765 88999999999999999999982 12233456777777788888888888888
Q ss_pred EECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 265 LIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 265 ~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
.|| .++.|.||+||.||.||+||+|.+ |.||+||+||+||.|.+|+|+++++|+++...+
T Consensus 341 ~Ig--~g~~I~NSVIG~~c~IgsN~~I~~-S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~ 400 (673)
T KOG1461|consen 341 KIG--SGSKISNSVIGANCRIGSNVRIKN-SFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK 400 (673)
T ss_pred ccc--CCCeeecceecCCCEecCceEEee-eeeecCcEECCCceEeeeEeecCcEeCCCcccC
Confidence 888 888888888888888888888888 888888888888888888888888888887764
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.6e-40 Score=308.00 Aligned_cols=308 Identities=20% Similarity=0.282 Sum_probs=237.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.|||||||.|+||++ ..||+|+|++|+|||+|+++.|..++++++++++++..+.+.+++.++ ...+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4799999999999985 679999999999999999999999999999999998888888877653 222334445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+.... ++|++++||. + ....++.+++.+ +.++++++. ..++..|+.+.. ++ +++.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence 667899999999999885322 2899999998 3 445688888744 445566555 556678888777 44 7899
Q ss_pred EeeecCCCC----CCCeEEEEEEEEChhhH-hhccc---C---CCCcccchHHHHHhcCc-EEEEEeC-ceEEecCCHHH
Q 020113 156 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAAENK-LFAMVLP-GFWMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~~~l~~l~~~~~-i~~~~~~-~~~~~i~t~~d 222 (331)
.+.|||... .+.+.++|+|+|+++.+ +.++. . ...+..++++.+++.+. +.++..+ ++|.+++||+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999987532 23688999999998765 33321 1 11223467888888775 8888886 46999999999
Q ss_pred HHHHHHHHHhhh-----c-------c-----ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 223 YITGLRLYLDFL-----Q-------K-----NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 223 ~~~a~~~~l~~~-----~-------~-----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
|.+++..+..+. . + .....|++++.|+++++|++++.||++|.|+ .++.|.+++||++|.|
T Consensus 235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~--~~~~i~~~~Ig~~~~I 312 (446)
T PRK14353 235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIH--AFSHLEGAHVGEGAEV 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEEC--CCeEEeccEECCCcEE
Confidence 999987554432 0 0 1235678888888888888899999999998 7788889999999999
Q ss_pred CCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 286 GRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 286 g~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
|+++.|..+|+||++|+||+++.+.+++|++++.++
T Consensus 313 g~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 313 GPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred CCCeEEeccceecCCeEEcCceEEeceEECCCCEEC
Confidence 999999866999999999999988776666655443
No 24
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.6e-40 Score=311.18 Aligned_cols=308 Identities=23% Similarity=0.329 Sum_probs=233.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|..+|++++++++++..+.+++++.. .++.++.+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~~i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLNWVLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcEEEEC
Confidence 5799999999999985 68999999999999999999999999999999999877778877754 13445556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.+++.+... ++|++++||. +.+.++.++++.|.+.+...... .+++..|+++.. ++ +++.++
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~--~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~~~~~~yG~v~~-~~-g~V~~~ 152 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITR-EN-GKVVGI 152 (456)
T ss_pred CCCCCcHHHHHHHHHhhccC--CcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEcCCCCCceEEEe-cC-CeEEEE
Confidence 67889999999999988532 2899999998 55678999998876544222112 577788998754 45 799999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhHhh-cc---cC---CCCcccchHHHHHhcC-cEEEEE------eCce--EEec
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVLDR-IE---LK---PTSIEKEVFPEIAAEN-KLFAMV------LPGF--WMDI 217 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~---~~---~~~~~~~~l~~l~~~~-~i~~~~------~~~~--~~~i 217 (331)
.|||... .++++++|+|+|+++.|.. ++ .. ...+..++++.+++++ ++.+|. +.|+ |.|+
T Consensus 153 ~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di 232 (456)
T PRK09451 153 VEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQL 232 (456)
T ss_pred EECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHH
Confidence 9998532 2468999999999987753 32 11 1122357889999886 688886 4565 6789
Q ss_pred CCHHHHHHHHH--HHHh-hhcc--------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEEC
Q 020113 218 GQPKDYITGLR--LYLD-FLQK--------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVG 286 (331)
Q Consensus 218 ~t~~d~~~a~~--~~l~-~~~~--------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig 286 (331)
+++++|+++++ .++. .... ..+..+++++.|+++++|+.+++||++|.|+ ++|.|.+|+|+++|.|+
T Consensus 233 ~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~--~~~~i~~~~ig~~~~I~ 310 (456)
T PRK09451 233 ARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIG--AGCVLKNCVIGDDCEIS 310 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEEC--CCceEecCEEcCCCEEc
Confidence 99999999874 2222 2211 1122367788888888888888888888888 77888888888888888
Q ss_pred CCcEEccceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 287 RWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 287 ~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
+++.|.+ |+|+++++|++++.|. ++.+++++.|++++
T Consensus 311 ~~~~i~~-~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~ 348 (456)
T PRK09451 311 PYSVVED-ANLGAACTIGPFARLRPGAELAEGAHVGNFV 348 (456)
T ss_pred CCEEEeC-CccCCCcEecCceEEeCCCEECCCceeccce
Confidence 8888876 7788888887777774 66666666666554
No 25
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.2e-39 Score=285.41 Aligned_cols=227 Identities=26% Similarity=0.453 Sum_probs=192.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh------------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~------------ 68 (331)
|+|||||||.|+||+|+|..+||||+||+|||+|+|+++.+..+|+++|++++++..+.+.+|+....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 79999999999999999999999999999999999999999999999999999999899999986411
Q ss_pred ---------hccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCCc
Q 020113 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE 131 (331)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~~ 131 (331)
.++++++.++.+.++.|++++++++.+++.++ +|+|++||.+++ .++.++++.|.+.++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~---~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCC---CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 02466788888999999999999999999642 899999999886 4889999999877766
Q ss_pred eEEE--e-cCCCCceEEEEc----CCcCc---eeEeeecCCCC---CCCeEEEEEEEEChhhHhhcccC-CC-Ccc---c
Q 020113 132 ASIM--V-DEPSKYGVVVME----ETTGK---VEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELK-PT-SIE---K 193 (331)
Q Consensus 132 ~~i~--~-~~~~~~~~v~~d----~~~~~---v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~-~~-~~~---~ 193 (331)
.+++ + +++..||++.++ ++ ++ +.++.|||..+ .++++++|+|+|++++++.++.. .. ..+ .
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 6555 3 468899999984 34 54 58889998654 47899999999999999988432 11 122 3
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
++++.++++++++++.++|+|+|+++|++|++|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999988764
No 26
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-38 Score=299.90 Aligned_cols=306 Identities=24% Similarity=0.411 Sum_probs=220.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|++++|.++|+++++++++++.+.+++++.+ + +.+..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~--~~~~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R--SEFALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C--cEEEEc
Confidence 4799999999999985 78999999999999999999999999999999999888888877654 1 234445
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.++++++... ++|++++||. +...++.++++.|.+.+++++++ .+++..|+.+..|++ +++.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~~-d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADKE-GTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhcccC-CeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 667899999999999986422 2799999997 45677999999998877777666 556677888888876 8899
Q ss_pred EeeecCCC----CCCCeEEEEEEEEChhh-Hhhccc---C---CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 020113 156 KFVEKPKN----FVGNKINAGIYLLNPSV-LDRIEL---K---PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPK 221 (331)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~-l~~l~~---~---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~ 221 (331)
.+.|||.. ....++++|+|+|+++. ++.++. . ......++++.+++.+ ++.+|+++++ |+++++++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 22468999999999974 444421 1 1111246677777765 5999998865 66888999
Q ss_pred HHHHHHHHHHhhhcc-----------------ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCC-
Q 020113 222 DYITGLRLYLDFLQK-----------------NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHS- 283 (331)
Q Consensus 222 d~~~a~~~~l~~~~~-----------------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~- 283 (331)
||..++..+..+... ..+..|++++.|+++++|+.++.||++|.|+ .++.|.+|+|+++|
T Consensus 231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~ig~~~~ 308 (458)
T PRK14354 231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIG--PGSRIVDSTIGDGVT 308 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEEC--CCcEEeccEECCCCE
Confidence 999987655433321 1234466667777777777777777888887 66666655555544
Q ss_pred ---------------EECCCcEEccceEECCCcEECcccEEcCcEEccCeEE
Q 020113 284 ---------------TVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 284 ---------------~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 320 (331)
.||++|.|..+++||++|+|++++.+.+++|++++.+
T Consensus 309 I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i 360 (458)
T PRK14354 309 ITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKV 360 (458)
T ss_pred EEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEe
Confidence 4455555553455555555555555544444444433
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=9e-39 Score=278.77 Aligned_cols=226 Identities=40% Similarity=0.729 Sum_probs=196.5
Q ss_pred EEEEeCC--CCcccCCCCCCCCCCCceeCCcchHHHHHHHHHH-cCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G--~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ +|++++++++++..+.+.+|+.+..+..++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999888999999875444566777777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---e--cCCCCceEEEEc-CCcCc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---V--DEPSKYGVVVME-ETTGK 153 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~--~~~~~~~~v~~d-~~~~~ 153 (331)
+..+.|++++++.+.+.+....+++|+|++||++++.++.++++.|++++++++++ + +++..||++.+| ++ ++
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~-g~ 159 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST-GE 159 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC-Ce
Confidence 77789999999999999853322389999999999999999999999998888877 2 356789999998 55 89
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhccc---------------------CCCCcccchHHHHHhcCcEEEEEeCc
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---------------------KPTSIEKEVFPEIAAENKLFAMVLPG 212 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---------------------~~~~~~~~~l~~l~~~~~i~~~~~~~ 212 (331)
|..+.|||..+.++++++|+|+|++++++.+.. ...++..++++.+++++++++|+++|
T Consensus 160 v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g 239 (257)
T cd06428 160 VLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDD 239 (257)
T ss_pred EEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCC
Confidence 999999998778899999999999999977632 11234468899999999999999999
Q ss_pred eEEecCCHHHHHHHHHH
Q 020113 213 FWMDIGQPKDYITGLRL 229 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~ 229 (331)
+|.|++||++|+++|+.
T Consensus 240 ~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 240 FWSQIKTAGSAIYANRL 256 (257)
T ss_pred eeecCCCHHHHHhHhhc
Confidence 99999999999999875
No 28
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-37 Score=291.68 Aligned_cols=305 Identities=21% Similarity=0.303 Sum_probs=207.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.|.++ ++++.|+++++.+.+++++.+.. .++++.....
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence 4799999999999987 7899999999999999999999987 78999999998888888887632 1334433333
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+...|+++++..+.. . .|+|++++||..+.. ...++.+.+.++++++. ++++..|+.+..+ + +++..+
T Consensus 77 ~~~~gt~~al~~~~~----~-~d~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP----K-HERVLILNGDMPLVE--KDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc----C-CCeEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 445789999876321 1 238999999994321 23444454556666555 5667789887765 4 789999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhHhhccc----C---CCCcccchHHHHHhcC-cEEEEEeC-ceEEecCCHHHHH
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVLDRIEL----K---PTSIEKEVFPEIAAEN-KLFAMVLP-GFWMDIGQPKDYI 224 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~l~~----~---~~~~~~~~l~~l~~~~-~i~~~~~~-~~~~~i~t~~d~~ 224 (331)
.|++... ...+.++|+|+|++++|+.+.. . ...+..++++.+++.+ ++.++.++ ++|.|+++|+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 9887532 2467899999999999876521 1 1122346778888775 58888886 5899999999999
Q ss_pred HHHHHHHhhhccc-----------cCCccCCCceEecceEEcC-----------CcEECCCcEECCCCCceEeCCEEcCC
Q 020113 225 TGLRLYLDFLQKN-----------SSSKLATGSNIIGNVLVHE-----------GAKIGDGCLIGPDKHACISSSIIGWH 282 (331)
Q Consensus 225 ~a~~~~l~~~~~~-----------~~~~i~~~~~i~~~~~i~~-----------~~~i~~~~~I~~~~~~~i~~s~i~~~ 282 (331)
.++..+..+.... ....+.+++.|.+++.|++ +++||++|.|+ . +++.+|+||++
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~--~-~~i~~~~ig~~ 304 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIE--E-SIIENSDVGPL 304 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEe--c-cEEeCCEECCC
Confidence 9987666554221 0112333333333333333 33444455543 2 44556777777
Q ss_pred CEECCCcEEccceEECCCc----------EECcccEEcCcEEccCeEEccCc
Q 020113 283 STVGRWARVENMTILGEDV----------HVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 283 ~~ig~~~~i~~~~~i~~~~----------~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
|.|+++|.|.+ |+||++| +||+++.+.+|+|++++.|++++
T Consensus 305 ~~i~~~~~i~~-~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 305 AHIRPKSEIKN-THIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGT 355 (430)
T ss_pred CEECCCcEEec-cEEcCcEEEcccEeccccccccccccCCEECCCCEECCCc
Confidence 77777776654 6666665 44455556666666666666653
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.1e-38 Score=277.16 Aligned_cols=229 Identities=39% Similarity=0.729 Sum_probs=196.6
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEe-ccChHHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
||||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|++++++++ ++..+.+.+++++ ...+++++.++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeee
Confidence 799999999999999999999999999999 9999999999999999955555 4667889999987 344567888888
Q ss_pred CCcccCChHHHHHHHhhccCCC-CCcEEEEeCCeeccccHHHHHHHHhhcCCce--EEE---ecCCCCceEEEEcCCcCc
Q 020113 80 ETEPLGTAGPLALARDKLIDDS-GEPFFVLNSDVISEYPLKQMIEFHRGRGGEA--SIM---VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~--~i~---~~~~~~~~~v~~d~~~~~ 153 (331)
++.+.|++++++.+.+.+.... .++|++++||++++.++.++++.|.++++++ ++. ..+++.||++.+|++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8889999999999999998763 2259999999999999999999999998844 333 466789999999987 89
Q ss_pred eeEeeecCCCCC-CCeEEEEEEEEChhhHhhcc----c--CCCCcccchHHHHHhcCc-EEEEEeCc--eEEecCCHHHH
Q 020113 154 VEKFVEKPKNFV-GNKINAGIYLLNPSVLDRIE----L--KPTSIEKEVFPEIAAENK-LFAMVLPG--FWMDIGQPKDY 223 (331)
Q Consensus 154 v~~~~ek~~~~~-~~~~~~Giy~~~~~~l~~l~----~--~~~~~~~~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~d~ 223 (331)
|.++.|||..+. +.++++|+|+|++++|+.+. . ....+..++++.+++++. +.++.+++ +|.|++||++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999877 88999999999999998772 1 233445678999999886 55778888 79999999999
Q ss_pred HHHHHHHHh
Q 020113 224 ITGLRLYLD 232 (331)
Q Consensus 224 ~~a~~~~l~ 232 (331)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998874
No 30
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-37 Score=292.38 Aligned_cols=291 Identities=25% Similarity=0.387 Sum_probs=209.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.+.+ +++++++++..+.+.+++.. + +.+..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~--~~~~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W--VKIFLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c--cEEEec
Confidence 8999999999999986 78999999999999999999999985 89999998887777777653 2 334456
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++++... ++|++++||. +.+.+++++++.|++.++++++. ++++..|+++..+ + +++
T Consensus 70 ~~~~g~~~ai~~a~~~l~~~--~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEPG--DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCcC--CeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 67789999999999998532 2899999997 56778999999998888888777 5677889998887 4 677
Q ss_pred EeeecCCCCC----CCeEEEEEEEEChhhHhh-ccc---CCCCcc---cchHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 020113 156 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---KPTSIE---KEVFPEIAAENKLFAMVLPGF--WMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~~~~----~~~~~~Giy~~~~~~l~~-l~~---~~~~~~---~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 222 (331)
.+.||+..+. .+++++|+|+|++++|.. ++. .....+ .++++.+ .++.+|.+.++ |.++++|++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence 7778764332 358999999999998644 321 111112 2455555 24788888887 777889999
Q ss_pred HHHHHHHHHhh----h-----c--------cccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEE
Q 020113 223 YITGLRLYLDF----L-----Q--------KNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTV 285 (331)
Q Consensus 223 ~~~a~~~~l~~----~-----~--------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~i 285 (331)
|..+...+... + . ..++.+|++++.|+++++|++++.||++|.|+ .+++|.+|+||++|.|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~--~~~~i~~s~Ig~~~~I 299 (448)
T PRK14357 222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIG--PMTRIVDCEIGNNVKI 299 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEEC--CCceecccEECCCCEE
Confidence 98876554322 1 0 01234566667777777777777788888887 6666665666665554
Q ss_pred ----------------CCCcEEccceEECCCcEECcccEEcCc
Q 020113 286 ----------------GRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 286 ----------------g~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
|+++.|..+++|+++|+||+++.+.++
T Consensus 300 ~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 342 (448)
T PRK14357 300 IRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKS 342 (448)
T ss_pred eeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeecc
Confidence 444555444555555555555544333
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=1.1e-37 Score=275.40 Aligned_cols=226 Identities=27% Similarity=0.483 Sum_probs=192.4
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-hh-----------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE----------- 68 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~----------- 68 (331)
|+|||||||.|+||+|+|..+||+|+||+|||+|+|+++++..+|+++|++++++..+.+.+|+.. |.
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 799999999999999999999999999999999999999999999999999999999999999863 10
Q ss_pred ---------hccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCCc
Q 020113 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGGE 131 (331)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~~ 131 (331)
..++.++.++.|.++.|++++++.+++++.++ +|+|+.||.++. .++.++++.|.+.+++
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~---~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDN---PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCC---CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 01356788888889999999999999999532 899999999875 4799999999888877
Q ss_pred eEEE---ecCCCCceEEEEc----CCcC---ceeEeeecCCCCC---CCeEEEEEEEEChhhHhhcccC-CCC----ccc
Q 020113 132 ASIM---VDEPSKYGVVVME----ETTG---KVEKFVEKPKNFV---GNKINAGIYLLNPSVLDRIELK-PTS----IEK 193 (331)
Q Consensus 132 ~~i~---~~~~~~~~~v~~d----~~~~---~v~~~~ek~~~~~---~~~~~~Giy~~~~~~l~~l~~~-~~~----~~~ 193 (331)
.+++ .+++..||++.+| ++ + +|..+.|||..+. ++++++|+|+|++++++.+... ... ...
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 6555 3567899999996 34 5 6789999987543 7899999999999999888431 111 124
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
++++.+++++++.+|.++|+|+|+++|++|++|+..+
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 7888999999999999999999999999999999987
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1e-37 Score=274.11 Aligned_cols=226 Identities=23% Similarity=0.411 Sum_probs=193.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEecc-ChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|..+||+|+|++|||||+|+++.|..+|+++|++++.+ ..+.+++++.+ +++|++++.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999987764 45778888876 456888898999
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+..+.|+++++..+.+++.++ +++++.||.+ ++.++.++++.|.+.+++++++ +.+++.||++.+|++ +++.
T Consensus 83 q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 999999999999999999643 7888999975 5789999999998887788776 678899999999987 8999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC-C-CCcc---cchHHHHHhcCcEEE-EEeCc-eEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-P-TSIE---KEVFPEIAAENKLFA-MVLPG-FWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-~-~~~~---~~~l~~l~~~~~i~~-~~~~~-~~~~i~t~~d~~~a~~ 228 (331)
++.|||..+.++++++|+|+|++++++.++.- + ...+ .++++.+++++++.. +...+ .|+|++||++|++|+.
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~ 238 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence 99999988889999999999999999877321 1 1112 467888888888643 45567 4999999999999988
Q ss_pred HHH
Q 020113 229 LYL 231 (331)
Q Consensus 229 ~~l 231 (331)
.+.
T Consensus 239 ~~~ 241 (292)
T PRK15480 239 FIA 241 (292)
T ss_pred HHH
Confidence 765
No 33
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.1e-37 Score=288.82 Aligned_cols=306 Identities=21% Similarity=0.336 Sum_probs=220.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||++ .+||+|+|++|+|||+|+++.|.++|+.++++++++..+.+++++.+.. .+.++.+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-----~i~~v~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP-----GLEFVEQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----CeEEEEe
Confidence 5789999999999986 7899999999999999999999999999999999988777888776421 2444556
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
..+.|++++++.+++.+....+ ++++++||. +.+.+++.+++.|.+.+++++++ ..++..|+.+.+|++ +++.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~~-~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFEG-DLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccCC-cEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 6678999999999998864222 799999999 56678999999999888887766 467778999999887 8999
Q ss_pred EeeecCC----CCCCCeEEEEEEEEChhhHhhc-ccC---CCCcc---cchHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 020113 156 KFVEKPK----NFVGNKINAGIYLLNPSVLDRI-ELK---PTSIE---KEVFPEIAAENKLFAMVLPGF--WMDIGQPKD 222 (331)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l-~~~---~~~~~---~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~d 222 (331)
++.|||. ...++++++|+|+|+++.|..+ +.- ....+ .+.++.+. .+..+.+.++ +..+++|+|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHH
Confidence 9999974 2346799999999999877654 211 11112 23455553 2455666655 566999999
Q ss_pred HHHHHHHHHhhhcc----------c-------cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe----------
Q 020113 223 YITGLRLYLDFLQK----------N-------SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------- 275 (331)
Q Consensus 223 ~~~a~~~~l~~~~~----------~-------~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------- 275 (331)
+..+...+...... . ....+++++.|++++.|+.++.||++|.|+ +++.|.
T Consensus 229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~--~~~~I~~~~I~~~~~I 306 (450)
T PRK14360 229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIG--PGSLIENSQIGENVTV 306 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEEC--CCcEEEEEEEcCCCEE
Confidence 99887765443210 1 122345555555555665566666666666 445544
Q ss_pred ------CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 276 ------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 276 ------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
+|+|+++|.||++|+|+++++||++|+||+++.+.++++++++.|.
T Consensus 307 ~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~ 358 (450)
T PRK14360 307 LYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVN 358 (450)
T ss_pred eeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEec
Confidence 4566667777777777755777777777777776555555544443
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.7e-37 Score=268.10 Aligned_cols=225 Identities=28% Similarity=0.460 Sum_probs=191.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|++++++++++. .+.+.+++.+ ++.|++++.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence 89999999999999999999999999999999999999999999999999988754 4678888875 345677787777
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
+..+.|++++++.+.+.+..+ +++|++||.+ .+.++.++++.|.+++++++++ +.++..|+++.+|++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~---~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhcCCC---CEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 777889999999999998642 8999999984 5667999999998888887776 566778999999987 8999
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcc-cchHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIE-KEVFPEIAAENKLFAMVLP--GFWMDIGQPKDYITGLR 228 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~-~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~d~~~a~~ 228 (331)
.+.|||..+.++++++|+|+|++++++.+... ...++ .++++.+++++++.++.++ ++|.|++||++|.++++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999988778899999999999999877321 11122 3788999998888777776 99999999999999998
Q ss_pred HH
Q 020113 229 LY 230 (331)
Q Consensus 229 ~~ 230 (331)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 65
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=3.3e-37 Score=267.74 Aligned_cols=226 Identities=31% Similarity=0.520 Sum_probs=195.5
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhc-cCeE------
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIK------ 74 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~-~~~~------ 74 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.++... .+.+
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999888899998764211 0122
Q ss_pred -------------EEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCCC
Q 020113 75 -------------ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPS 140 (331)
Q Consensus 75 -------------v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~~ 140 (331)
+.+..+.++.|++++++.+++.+.++ +|++++||.+++.++.++++.|.+.+++++++ +.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e---~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~~~~ 157 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDE---AFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPG 157 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCC---eEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEecCCC
Confidence 22344446789999999999999632 89999999999999999999999999998877 67788
Q ss_pred CceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCH
Q 020113 141 KYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQP 220 (331)
Q Consensus 141 ~~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~ 220 (331)
.||.+.+|+ +++..+.|||... +.++++|+|+|++++|+.+.....++..++++.+++++++.+|.++|+|.|++||
T Consensus 158 ~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~ 234 (254)
T TIGR02623 158 RFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTL 234 (254)
T ss_pred cccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCch
Confidence 999999885 6899999998644 6799999999999999888655556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 020113 221 KDYITGLRLYLDF 233 (331)
Q Consensus 221 ~d~~~a~~~~l~~ 233 (331)
++|.+++..+.+.
T Consensus 235 ~~~~~~~~~~~~~ 247 (254)
T TIGR02623 235 RDKNYLEELWESG 247 (254)
T ss_pred HHHHHHHHHHHcC
Confidence 9999998876544
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=4.8e-37 Score=269.59 Aligned_cols=224 Identities=24% Similarity=0.436 Sum_probs=192.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+|||||||.|+||+|+|..+||+|+|++|||||+|+++.|..+|+++|+++++ ++.+.+++++.+ ++.|++++.+..+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 68999999999999999999999999999999999999999999999998885 455778888876 4567888999988
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeE
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~ 156 (331)
+++.|++++++.+.+.+.++ +++++.||. +++.++.++++.|.+.+++++++ +.++..||++.+|++ ++|.+
T Consensus 80 ~~~~Gta~al~~a~~~l~~~---~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGGD---PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHhCCC---CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 88999999999999999643 789999997 46788999999998887777776 678889999999987 89999
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcc-cchHHHHHhcCcEEEEEe-Cce-EEecCCHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIE-KEVFPEIAAENKLFAMVL-PGF-WMDIGQPKDYITGLRL 229 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~-~~~l~~l~~~~~i~~~~~-~~~-~~~i~t~~d~~~a~~~ 229 (331)
+.|||..+.++++++|+|+|++++++.+..- ...++ .++++.+++++++..+.. .++ |.|++||++|++|+..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999988889999999999999998876321 12222 478888999888766655 575 9999999999999775
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 236 ~ 236 (286)
T TIGR01207 236 I 236 (286)
T ss_pred H
Confidence 5
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.8e-35 Score=254.99 Aligned_cols=226 Identities=33% Similarity=0.566 Sum_probs=194.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+++++.+ ..+++.++.++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-GSRFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-hhhcCCeEEEEEC
Confidence 899999999999999999999999999999999999999999999999999999988889999876 2345667777777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+.|++++++.++..+..+ ++++++||.+++.++.++++.|.+.+++++++ ..++..|+++.+|+ +++..+
T Consensus 80 ~~~~g~~~sl~~a~~~i~~~---~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 77889999999999998622 89999999999999999999999888888766 45667889888874 689999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCC--CCc---ccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP--TSI---EKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~--~~~---~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.|||..+.+.+.++|+|+|++++++.+.... ... -.++++.+++.+ ++.+++++++|.+++||+||.++++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 9998776678999999999999988773211 111 146788888776 4999999999999999999999999887
Q ss_pred h
Q 020113 232 D 232 (331)
Q Consensus 232 ~ 232 (331)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
No 38
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.1e-35 Score=260.84 Aligned_cols=228 Identities=28% Similarity=0.421 Sum_probs=189.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh------c----
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK------K---- 70 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~------~---- 70 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+..... .
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999998889988864110 0
Q ss_pred ----------cCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 71 ----------~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
.+.++.+..+..+.|++++++.+++.+..+ +|+|++||.++.. ++.++++.|.+.+++..++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE---PFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEE 157 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCC---ceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 134666777777899999999999999642 8999999997653 4999999998777654333
Q ss_pred e--cCCCCceEEEEcCC---cCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC-----CcccchHHHHHhcC
Q 020113 136 V--DEPSKYGVVVMEET---TGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAAEN 203 (331)
Q Consensus 136 ~--~~~~~~~~v~~d~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~l~~l~~~~ 203 (331)
+ +++..|+++.+|++ .+++..+.|||. ...+.++++|+|+|++++|+.+..... ....++++.+++++
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~ 237 (267)
T cd02541 158 VPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE 237 (267)
T ss_pred cChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC
Confidence 2 35678999999851 258999999986 355789999999999999988743111 12236788999888
Q ss_pred cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 204 KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 204 ~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
++.+|+++++|.|++||++|+++++.+.
T Consensus 238 ~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 238 PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.1e-35 Score=253.63 Aligned_cols=215 Identities=28% Similarity=0.467 Sum_probs=185.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
+|||||||.|+||+|+|..+||+|+|++|+|||+|++++|.++|+++|++++++..+.+.+++.+ +.+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999988999999876 3467777777665
Q ss_pred -cccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHh--hcCCceEEE---ecCCCCceEEEEcCCcCcee
Q 020113 82 -EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR--GRGGEASIM---VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 82 -~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~ 155 (331)
++.|++++++.+++.+..+ +|++++||++++.++.++++.|. +.++.+++. .+++..++.+.+|++ +++.
T Consensus 79 ~~~~g~~~~l~~~~~~~~~~---~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLGDE---PFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcCCC---CEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 6789999999999999642 89999999999999999999998 455555555 345678899999987 8899
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
.+.+||.. .++++|+|+|+++++..+... .....++++.+++++++.++.++++|.|++||++|.+|
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888753 799999999999999987543 22234788999999999999999999999999999864
No 40
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=2.4e-35 Score=260.80 Aligned_cols=226 Identities=25% Similarity=0.350 Sum_probs=189.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc---------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL--------- 71 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~--------- 71 (331)
|+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+++++.++|+++|++++++..+.+.+|+.+. ..|
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~~~~ 87 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLEKRVK 87 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhhhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999741 111
Q ss_pred -------------CeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeecc--------ccHHHHHHHHhhcCC
Q 020113 72 -------------EIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGRGG 130 (331)
Q Consensus 72 -------------~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~~~~~ 130 (331)
+..+.+..+..+.|++++++.+.+.+.++ +|+|++||.+++ .++.++++.|.+.++
T Consensus 88 ~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~---~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~ 164 (302)
T PRK13389 88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH 164 (302)
T ss_pred hHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCC---CEEEEeCcceecccccccccccHHHHHHHHHhcCC
Confidence 23566666777899999999999987532 899999999864 689999999988777
Q ss_pred ceEEE--ecCCCCceEEEEcC------CcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCC--C---Ccccch
Q 020113 131 EASIM--VDEPSKYGVVVMEE------TTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP--T---SIEKEV 195 (331)
Q Consensus 131 ~~~i~--~~~~~~~~~v~~d~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~--~---~~~~~~ 195 (331)
+.+++ ++++..||++.+++ +.+++..+.|||. .+.++++++|+|+|++++++.++... . .+..++
T Consensus 165 ~tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 165 SQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred CEEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 63333 66788999998863 1257999999997 34578999999999999998773211 1 122468
Q ss_pred HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 020113 196 FPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 196 l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~ 230 (331)
++.+++++++.+|.++|+|+|++||++|++|+..+
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 89999988999999999999999999999998876
No 41
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=2.6e-35 Score=251.81 Aligned_cols=219 Identities=35% Similarity=0.620 Sum_probs=190.2
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+. ..++.++.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999998888888888752 12355665666677
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
..|++++++.+++.+..+ +|++++||++++.++.++++.|.+.+.++++. .++...|+.+.+|++ +++..+.|
T Consensus 80 ~~G~~~~l~~a~~~~~~~---~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhcCCC---CEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 889999999999998432 89999999999889999999998877777666 445678898888887 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
||....+.+.++|+|+|++++++.+.....+.+.++++.++..+++.+|+++++|.||+|++||.+|
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876667899999999999999988554556677899999988899999999999999999999987
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=3.1e-35 Score=255.79 Aligned_cols=225 Identities=30% Similarity=0.543 Sum_probs=191.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhc-cCeEEE-----
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKIT----- 76 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~-~~~~v~----- 76 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|++++++..+.+++++.+..+. .++++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999874211 112221
Q ss_pred --Ee------------eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-ecCCCC
Q 020113 77 --CS------------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-VDEPSK 141 (331)
Q Consensus 77 --~~------------~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~ 141 (331)
+. .+..+.|++++++.+++.+..+ ++|++++||.+++.++.++++.|.+.+++++++ +.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~--~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 158 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGR 158 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcCCC--CeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEecCCCc
Confidence 11 1223567999999999999642 289999999999999999999999989988887 666788
Q ss_pred ceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHH
Q 020113 142 YGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPK 221 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~ 221 (331)
|+.+.+|++ ++|..+.|||... +.++++|+|+|++++++.+.....++..++++.+++++++++|.++|+|.+++|++
T Consensus 159 ~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~ 236 (253)
T cd02524 159 FGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLR 236 (253)
T ss_pred ccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHH
Confidence 999999987 8999999998754 57899999999999998885544455568999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020113 222 DYITGLRLYL 231 (331)
Q Consensus 222 d~~~a~~~~l 231 (331)
+|.+++..+.
T Consensus 237 ~~~~~~~~~~ 246 (253)
T cd02524 237 DKQTLEELWN 246 (253)
T ss_pred HHHHHHHHHH
Confidence 9999987663
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.2e-34 Score=253.40 Aligned_cols=223 Identities=26% Similarity=0.394 Sum_probs=183.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh---h-------c
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---K-------K 70 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~---~-------~ 70 (331)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+++|+.+.. . .
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999986310 0 0
Q ss_pred ----------cCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 71 ----------~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
.+..+.+..+..+.|++++++.+++.+..+ +|+|++||.++.. ++.++++.|.+++++.+++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 157 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDE---PFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEE 157 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCC---CEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEE
Confidence 023455666677889999999999998432 8999999997643 6999999999888875444
Q ss_pred e--cCCCCceEEEEcC---CcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccCCC-----CcccchHHHHHhcC
Q 020113 136 V--DEPSKYGVVVMEE---TTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAAEN 203 (331)
Q Consensus 136 ~--~~~~~~~~v~~d~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~l~~l~~~~ 203 (331)
+ +++..||++.+|. +.++|..+.|||. ...++++++|+|+|++++|+.+..... ....++++.+++.+
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~ 237 (260)
T TIGR01099 158 VPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE 237 (260)
T ss_pred CChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC
Confidence 2 3567899999872 2268999999984 345779999999999999988732111 11236788888889
Q ss_pred cEEEEEeCceEEecCCHHHHHHH
Q 020113 204 KLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 204 ~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
++++|+++|+|.|++||++|++|
T Consensus 238 ~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 238 TVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CEEEEEcceEEEeCCCHHHHhhC
Confidence 99999999999999999999874
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1e-33 Score=241.45 Aligned_cols=216 Identities=33% Similarity=0.652 Sum_probs=182.0
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|++++++++++..+.+.+++.+ ..+++.++.++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-GSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-ccccCccEEEEECCC
Confidence 6899999999999999999999999999999999999999999999999999888888888875 233566677766667
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
+.|+++++..+.+... ++|+|++||.+++.++.++++.|++.+++++++ ......|+++..|+ ++|.++.|
T Consensus 80 ~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 7899999987766542 289999999999999999999999888887777 23456789888874 79999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
||.. +.++++|+|+|++++++.+.........++++.+++++ ++.+|+++++|.+++||+||.+|+
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8754 57899999999999999885443222346788888876 499999999999999999999874
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=9.7e-34 Score=241.07 Aligned_cols=211 Identities=40% Similarity=0.725 Sum_probs=184.4
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.+. ..++..+.++.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999999998888888888762 22456777777777
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEeee
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKFVE 159 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~~e 159 (331)
+.|++++++.+++.+..+ +|++++||++++.++.++++.|.+.+++++++ .+++..|+++.+|++ +++..+.|
T Consensus 80 ~~g~~~al~~~~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999998322 99999999999999999999999888888877 445778999999987 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhHhhcccC---CCCcccchHHHHHhcCcEEEEEeCceEEecC
Q 020113 160 KPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAAENKLFAMVLPGFWMDIG 218 (331)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~ 218 (331)
||....++++++|+|+|++++++.++.. ..++..++++.+++++++.+|+++|+|.|++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 9887667899999999999999877543 2455568899999889999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-32 Score=229.17 Aligned_cols=230 Identities=29% Similarity=0.436 Sum_probs=196.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH-------h------
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-------F------ 67 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-------~------ 67 (331)
++|||+|||.|+||.|.|+..||-||||.+||+|+|.++.+..+|++++++|++.+...+++|+.. +
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 489999999999999999999999999999999999999999999999999999988888888753 0
Q ss_pred -----hh--ccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccc---cHHHHHHHHhhcCCceEEE--
Q 020113 68 -----EK--KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGRGGEASIM-- 135 (331)
Q Consensus 68 -----~~--~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~i~-- 135 (331)
-+ ....++.++.|.++.|.++|++.+.+.+.++ ||.|+.+|.+... .++++++.+.+.+.+...+
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~e 161 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEE 161 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEE
Confidence 01 1246788999999999999999999999876 9999999997653 3899999999999877777
Q ss_pred e--cCCCCceEEE----EcCCcCceeEeeecCC--CCCCCeEEEEEEEEChhhHhhcccC--CCCcc---cchHHHHHhc
Q 020113 136 V--DEPSKYGVVV----MEETTGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK--PTSIE---KEVFPEIAAE 202 (331)
Q Consensus 136 ~--~~~~~~~~v~----~d~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~--~~~~~---~~~l~~l~~~ 202 (331)
+ ++.++||++. .+.+..++..+.|||. +..|+++..|.|++++++|+.|+.. ....| .|.+..|++.
T Consensus 162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~ 241 (291)
T COG1210 162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK 241 (291)
T ss_pred CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence 3 5678999998 4443357999999985 4568999999999999999999542 12222 4678888999
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 020113 203 NKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 233 (331)
Q Consensus 203 ~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~ 233 (331)
+.+++|.+.|..+|++++..|++|+..+..+
T Consensus 242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 242 EPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred CcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 9999999999999999999999999887654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=3.2e-30 Score=219.18 Aligned_cols=176 Identities=22% Similarity=0.358 Sum_probs=144.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc-----CeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL-----EIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-----~~~v 75 (331)
|+|||||||.|+||+|+|..+||||+|++|+|||+|+++++.++|+++|++++++..+.+++|+++.. .| ...+
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i 79 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIV 79 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcceE
Confidence 68999999999999999999999999999999999999999999999999999998899999998732 22 2356
Q ss_pred EEeeCCcccCChHHHHHH--HhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhc-----CCceEEE---ecCCC-----
Q 020113 76 TCSQETEPLGTAGPLALA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGR-----GGEASIM---VDEPS----- 140 (331)
Q Consensus 76 ~~~~~~~~~G~~~al~~~--~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~i~---~~~~~----- 140 (331)
.+..+.++.|+++++... ...+. ++|++++||.+++.++.++++.|++. +++++++ +.++.
T Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 80 IIIMSEDCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEEeCCCcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 666666777888887543 33332 28999999999999999999999874 6777766 33333
Q ss_pred -CceEEEEcCCcCceeEeeecCCCCC--------------------CCeEEEEEEEEChhhH
Q 020113 141 -KYGVVVMEETTGKVEKFVEKPKNFV--------------------GNKINAGIYLLNPSVL 181 (331)
Q Consensus 141 -~~~~v~~d~~~~~v~~~~ek~~~~~--------------------~~~~~~Giy~~~~~~l 181 (331)
.++++.+|++++++..+.|||..+. +++.++|+|+|+++++
T Consensus 156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2578888876589999999976433 6899999999999874
No 48
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=4.7e-29 Score=214.30 Aligned_cols=213 Identities=22% Similarity=0.395 Sum_probs=164.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChH---HHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~---~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|++++++++++... .+..++... ..+..+.+ .
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~-~ 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE-L 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE-e
Confidence 48999999999999999999999999999999999999999999999998864321 122222221 12445533 3
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE--ecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM--VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~--~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+..+.|++++++.++..+..+ ++|++++||++++.++.++++.|.+.+.+++++ ..+...|+++.+|++ +++..+
T Consensus 78 ~~~~~g~~~~l~~a~~~l~~~--~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~-~~v~~~ 154 (231)
T cd04183 78 DGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDEN-GRVIET 154 (231)
T ss_pred CCCCCcHHHHHHHHHhhcCCC--CCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCC-CCEEEe
Confidence 456889999999999988432 289999999999999999999888777666655 335568999999987 899999
Q ss_pred eecCCCCCCCeEEEEEEEEChh-hH-hhcc----cC----CCCcccchHHHHHhcC-cEEEEEe-CceEEecCCHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPS-VL-DRIE----LK----PTSIEKEVFPEIAAEN-KLFAMVL-PGFWMDIGQPKDY 223 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~-~l-~~l~----~~----~~~~~~~~l~~l~~~~-~i~~~~~-~~~~~~i~t~~d~ 223 (331)
.||+. .+.+.++|+|+|+++ .+ +.+. .. ......++++.+++++ ++.++.+ .++|.|++||+||
T Consensus 155 ~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 155 AEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 88843 357899999999987 43 3332 11 1112246888888887 4999999 6899999999987
No 49
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=1.4e-29 Score=212.61 Aligned_cols=183 Identities=26% Similarity=0.462 Sum_probs=150.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCe-------E
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEI-------K 74 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-------~ 74 (331)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+ ...|+. .
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGS-GKEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhC-CCcccCCCCCCCEE
Confidence 68999999999999999999999999999 99999999999999999999999999999999875 222322 2
Q ss_pred EEEe----eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCC
Q 020113 75 ITCS----QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEET 150 (331)
Q Consensus 75 v~~~----~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~ 150 (331)
+.+. .+..+.|+++++..+.+.+...++++|+|++||++++.++.++++.|.+++++++++..
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 3222 13467899999999999986432338999999999999999999999888776655422
Q ss_pred cCceeEeeecCCCCCCCeEEEEEEEEChhhHhhc-cc----CCCCcccchHHHHHhcCcEEEEEeCceEEec
Q 020113 151 TGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL----KPTSIEKEVFPEIAAENKLFAMVLPGFWMDI 217 (331)
Q Consensus 151 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~----~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i 217 (331)
+++|+|+|+++++..+ +. ...+...++++.+++++++.+|.++++|.|+
T Consensus 147 ------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 5799999999988543 22 2345567899999999899999999999986
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=5.6e-29 Score=213.50 Aligned_cols=211 Identities=28% Similarity=0.461 Sum_probs=162.2
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+. .++.+.+..+..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 68999999999999999999999999999999999999999999999999999888888888752 244454444445
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecC---C--CCceEEEEcCCcCceeEe
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDE---P--SKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~---~--~~~~~v~~d~~~~~v~~~ 157 (331)
+.|++++++.+++.+. + +|++++||++++. ++++.|.+.+++.++++.+ . ..++... +++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~~-~---~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFLD-E---DFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHcC-C---CEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence 7899999999999982 2 8999999998764 5667777777788777221 1 2333322 223 578888
Q ss_pred eecCCCCC-CCeEEEEEEEEChhhHhhccc---------CCCCcccchHHHHHhcCcEE--EEEeCceEEecCCHHHHHH
Q 020113 158 VEKPKNFV-GNKINAGIYLLNPSVLDRIEL---------KPTSIEKEVFPEIAAENKLF--AMVLPGFWMDIGQPKDYIT 225 (331)
Q Consensus 158 ~ek~~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~~~l~~l~~~~~i~--~~~~~~~~~~i~t~~d~~~ 225 (331)
.+||..+. ....++|+|+|+++.++.+.. ....+-.++++.++++.++. .+.. ++|.|+++|+||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 89886544 468999999999999876521 11222346788888744444 4444 89999999999998
Q ss_pred H
Q 020113 226 G 226 (331)
Q Consensus 226 a 226 (331)
|
T Consensus 228 a 228 (229)
T cd02523 228 A 228 (229)
T ss_pred h
Confidence 7
No 51
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=1.5e-26 Score=198.45 Aligned_cols=210 Identities=26% Similarity=0.436 Sum_probs=165.1
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++|+++++++++++.+.+.+++.+ .+ +.++.+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PN--VEFVLQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CC--cEEEECCC
Confidence 69999999999987 68999999999999999999999999999999999887777777764 23 33445566
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCCCceEEEEcCCcCceeEe
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..|++++++.+++.++.. .++|++++||. +...++..+++.|.+.++++++. ..++..|+.+..+++ +++..+
T Consensus 72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 789999999999998641 23899999998 34667999999998777766655 566778998888876 889999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhH-hhcccC------CCCcccchHHHHHhcC-cEEEEEeCce--EEecCCHHHH
Q 020113 158 VEKPKNF----VGNKINAGIYLLNPSVL-DRIELK------PTSIEKEVFPEIAAEN-KLFAMVLPGF--WMDIGQPKDY 223 (331)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~d~ 223 (331)
.||+... ...+.++|+|+|+++.+ +.+... ...+..++++.+++.+ ++.++.++|+ |+.++||.++
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 9987422 13689999999998755 334221 1222357888888876 5999999765 8899999874
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=5.2e-27 Score=199.10 Aligned_cols=177 Identities=26% Similarity=0.444 Sum_probs=142.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhh-----hccCeEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----KKLEIKI 75 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-----~~~~~~v 75 (331)
|||||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|+++++|+++++.+.+.+++.+.. ...++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 79999999999999999999999999999999999999999999999999999999888888887621 1112344
Q ss_pred EEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHH--HhhcCCceEEE---e--c-------CCCC
Q 020113 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF--HRGRGGEASIM---V--D-------EPSK 141 (331)
Q Consensus 76 ~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~~~~~i~---~--~-------~~~~ 141 (331)
.+..+..+.|++++++.+.+.+.+ +|++++||.+++.++.+++++ +...++++++. . . ....
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 455566788999999999998843 899999999999999999965 44445555544 1 1 1456
Q ss_pred ceEEEEcCCc--CceeEeeecCCC------------------CCCCeEEEEEEEEChhhH
Q 020113 142 YGVVVMEETT--GKVEKFVEKPKN------------------FVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 142 ~~~v~~d~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~l 181 (331)
++++.+|+++ .++..+.|++.. ..+++.++|+|+|+++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 8899999886 466777776543 125799999999999864
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=6.6e-27 Score=198.27 Aligned_cols=177 Identities=28% Similarity=0.503 Sum_probs=143.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhh--hccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--KKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~--~~~~~~v~~ 77 (331)
|||||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|++++++++++.. +.+++++..+. ......+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 799999999999999999999999999999999999999999999999999998654 56777776531 111234445
Q ss_pred eeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEE-e--c--C-----------CCC
Q 020113 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-V--D--E-----------PSK 141 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-~--~--~-----------~~~ 141 (331)
..+....|++++++.+.+.+.+ +|+|++||.+++.++.++++.|++.++.++++ . . . ...
T Consensus 81 ~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 5567788999999999998733 89999999999999999999999988888877 1 1 1 124
Q ss_pred ceEEEEcCCcCceeEeeecCC------------------CCCCCeEEEEEEEEChhhH
Q 020113 142 YGVVVMEETTGKVEKFVEKPK------------------NFVGNKINAGIYLLNPSVL 181 (331)
Q Consensus 142 ~~~v~~d~~~~~v~~~~ek~~------------------~~~~~~~~~Giy~~~~~~l 181 (331)
+.++.+|+.+++++.+....+ ...+++.++|+|+|+++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 678888888788888765211 1136899999999998864
No 54
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=1.6e-26 Score=202.51 Aligned_cols=218 Identities=24% Similarity=0.311 Sum_probs=158.5
Q ss_pred CeEEEEeCCCCcccCCCCC-CCCCCCceeCC-cchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLTL-SVPKPLVDFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~-~~pK~llpi~g-~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|++||||||.|+||+|+|. .+||+|+|++| +|||+|+++.+...+ +++++|++++.. +.+++++.+ ....+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCce
Confidence 8999999999999999996 79999999998 999999999999984 999999998754 445666654 123455
Q ss_pred EeeCCcccCChHHHHHHHhhccCC-CCCcEEEEeCCeecc--ccHHHHHHHHhh---cCCceEEE---ecCCCCceEEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVISE--YPLKQMIEFHRG---RGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~-~~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~~~~~i~---~~~~~~~~~v~~ 147 (331)
++.++.+.|++.++..++..+... .++.++|++||.++. .++.++++.+.+ .++.+++. ..+.++||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 566777899999999999988632 123799999999765 457666765543 45566666 344578999999
Q ss_pred cCCc-C---ceeEeeecCCCCC--------CCeEEEEEEEEChhhHhh-cccC----------------CCCc---ccch
Q 020113 148 EETT-G---KVEKFVEKPKNFV--------GNKINAGIYLLNPSVLDR-IELK----------------PTSI---EKEV 195 (331)
Q Consensus 148 d~~~-~---~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~~-l~~~----------------~~~~---~~~~ 195 (331)
+++. + +|..|.|||.... ..++++|+|+|+.+.+.. ++.. ..++ ..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8652 2 8999999997431 248899999999876532 2100 0000 0111
Q ss_pred HH----------HHHhcCcEEEEEeCceEEecCCHHH
Q 020113 196 FP----------EIAAENKLFAMVLPGFWMDIGQPKD 222 (331)
Q Consensus 196 l~----------~l~~~~~i~~~~~~~~~~~i~t~~d 222 (331)
++ .|.+..++.+.+.+..|-|+|+.++
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 22 1344456888888888999999765
No 55
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.93 E-value=1.4e-24 Score=187.53 Aligned_cols=213 Identities=23% Similarity=0.294 Sum_probs=153.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.+||||+|.|+||+ ||+|+|++|+|||+|+++.+.++ |+++|+|++++ +.+.+++.+ +++++.+..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcC
Confidence 468999999999995 59999999999999999999998 89999998864 456666654 345665554
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhc-CCceEEE---ecCCC---CceE--EEEc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGR-GGEASIM---VDEPS---KYGV--VVME 148 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~-~~~~~i~---~~~~~---~~~~--v~~d 148 (331)
+....|++ .+..++..+... .+.|++++||+ +....+..+++.|.+. +.+++++ +.++. .++. +..+
T Consensus 70 ~~~~~gt~-~~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTD-RIAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhH-HHHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 44556776 466666666431 12799999997 4466799999988765 5666555 33333 3333 5567
Q ss_pred CCcCceeEeeecCC-------CCCCCeEEEEEEEEChhhHhhcccC-CCCcc-cchHH--HHHhcCc-EEEEEeCceEEe
Q 020113 149 ETTGKVEKFVEKPK-------NFVGNKINAGIYLLNPSVLDRIELK-PTSIE-KEVFP--EIAAENK-LFAMVLPGFWMD 216 (331)
Q Consensus 149 ~~~~~v~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~-~~~l~--~l~~~~~-i~~~~~~~~~~~ 216 (331)
++ +++..+.+++. .+.+.++++|+|+|+++.++.+... ...++ .+.++ .+++++. +.++..+++|.+
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 66 88888876542 1236799999999999999877432 11111 12222 3455664 889999889999
Q ss_pred cCCHHHHHHHHH
Q 020113 217 IGQPKDYITGLR 228 (331)
Q Consensus 217 i~t~~d~~~a~~ 228 (331)
+|||+||.++++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.93 E-value=2.3e-24 Score=186.85 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=153.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.++|||+|.|+||. +|+|+|++|+|||+|+++.|.++++++++|++++ +.+.+++.. ++.++.+..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCc
Confidence 48999999999993 5999999999999999999999999999998863 556666654 34566555555
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhhcCCceEEE---e------cCCCCceEEEEcCC
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGRGGEASIM---V------DEPSKYGVVVMEET 150 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~~~~~~~i~---~------~~~~~~~~v~~d~~ 150 (331)
...|+.. +..+...+.....+.+++++||+ + ....+.++++.+...+.+.+++ . .++..++++ +|++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556654 33344444211122689999999 3 4566899999887765555444 2 345566755 8877
Q ss_pred cCceeEeeecCCC----------CCCCeEEEEEEEEChhhHhhcccCC-CCc---c-cchHHHHHhcCcEEEEEeCc-eE
Q 020113 151 TGKVEKFVEKPKN----------FVGNKINAGIYLLNPSVLDRIELKP-TSI---E-KEVFPEIAAENKLFAMVLPG-FW 214 (331)
Q Consensus 151 ~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~l~~l~~~~-~~~---~-~~~l~~l~~~~~i~~~~~~~-~~ 214 (331)
+++..|.|||.. +.+++.++|+|+|+++.++.+.... ..+ . .++++.+.+..++.++..++ +|
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w 228 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS 228 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence 899999998731 2358999999999999988763211 111 1 11234333444699999986 89
Q ss_pred EecCCHHHHHHHHHHH
Q 020113 215 MDIGQPKDYITGLRLY 230 (331)
Q Consensus 215 ~~i~t~~d~~~a~~~~ 230 (331)
.++|||+||.+|++.+
T Consensus 229 ~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 229 IGVDTPEDLERVRALL 244 (245)
T ss_pred CCcCCHHHHHHHHHHh
Confidence 9999999999998653
No 57
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5e-25 Score=180.59 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=150.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEe-ccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|+|||||||.|+||+| ..||||+.++|+|+|+|++++|.++|++++++|+ ++..+.++.+++++. +..++.+..
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence 7999999999999999 8999999999999999999999999999999999 777788888888742 134454444
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCC-----CCceEEEEcCCcCce
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEP-----SKYGVVVMEETTGKV 154 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~-----~~~~~v~~d~~~~~v 154 (331)
.++..+++.+++.+++.+.. .|+++.+|.++... +++...+.++...++..++ ..-..+. +++ |++
T Consensus 79 ~y~ktN~~~Sl~~akd~~~~----~fii~~sD~vye~~---~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~i 149 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMDG----RFILVMSDHVYEPS---ILERLLEAPGEGLIVDRRPRYVGVEEATKVK-DEG-GRI 149 (239)
T ss_pred CcccCCceeEEeeehhhhcC----cEEEEeCCEeecHH---HHHHHHhCcCCcEEEeccccccccCceeEEE-ecC-CEE
Confidence 55566779999999999976 79999999998754 3333333344445552221 1112222 344 777
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhcccCC-CCcccchHHHHHhcCcEEEEEe-----CceEEecCCHHHHHHHHH
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAAENKLFAMVL-----PGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~l~~l~~~~~i~~~~~-----~~~~~~i~t~~d~~~a~~ 228 (331)
..+..+-.+ -+-.++|++.++.+.+..+..-. ..-++ -..++...-.+.+-.. ...|+++|||||+.++.+
T Consensus 150 ~~igK~l~e--~~~e~iGi~~l~~~i~~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~ 226 (239)
T COG1213 150 VEIGKDLTE--YDGEDIGIFILSDSIFEDTYELLVERSEY-DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARK 226 (239)
T ss_pred ehhcCCccc--ccceeeeeEEechHHHHHHHHHHhhhhhH-HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHH
Confidence 776654332 24568999999999876552110 00011 1122222222222222 357999999999999988
Q ss_pred HHHhhhc
Q 020113 229 LYLDFLQ 235 (331)
Q Consensus 229 ~~l~~~~ 235 (331)
.+.....
T Consensus 227 ~~~~~~~ 233 (239)
T COG1213 227 YLVPNIK 233 (239)
T ss_pred HHHHHHH
Confidence 8776653
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.93 E-value=1.2e-24 Score=203.83 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=159.1
Q ss_pred CeEEEEeCCCCcccCCCCCC-CCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeE-EE
Q 020113 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIK-IT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~-v~ 76 (331)
|.+||||||.|+||+|+|.. +||+|+|+.| +|||+|+++.|...++++++|+++... ..+.+.+..+ +.+ ..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999986 8999999976 899999999999999999999987654 3445555542 222 24
Q ss_pred EeeCCcccCChHHHHHHHhhccC--CCCCcEEEEeCCeecc--ccHHHHHHHHh---hcCCceEEE---ecCCCCceEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLID--DSGEPFFVLNSDVISE--YPLKQMIEFHR---GRGGEASIM---VDEPSKYGVVV 146 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~--~~~~~~lv~~~D~i~~--~~l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~ 146 (331)
++.++.+.||+.++..+...+.. ..++.++|++||.+.. ..|.++++++. +.++.+++. ..+.++||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 66778888999998887776632 1122589999998653 34888877653 334445555 34457999999
Q ss_pred EcCC-----cCceeEeeecCCCCC--------CCeEEEEEEEEChhhHh------------hccc-----CCC----Ccc
Q 020113 147 MEET-----TGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD------------RIEL-----KPT----SIE 192 (331)
Q Consensus 147 ~d~~-----~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~------------~l~~-----~~~----~~~ 192 (331)
.+++ .++|..|.|||.... ..++++|+|+|+.+.+. .+.. ... .+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 9741 258999999997422 35899999999965432 2210 000 111
Q ss_pred cchHH---------H-HHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 193 KEVFP---------E-IAAENKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 193 ~~~l~---------~-l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
.+.++ . |.+..++.+.+.+..|.|+++++++.+...
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 22333 1 233346888888888999999999988743
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=9.1e-23 Score=176.02 Aligned_cols=208 Identities=22% Similarity=0.272 Sum_probs=150.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.|||||+|.|+||+ +|+|+|++|+|||+|+++.+.++ ++++++|+++. +.+.+++.+ ++.++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCc
Confidence 48999999999994 49999999999999999999998 79999998864 456666654 3556655544
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC-ceEEE---ec------CCCCceEEEEc
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG-EASIM---VD------EPSKYGVVVME 148 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~-~~~i~---~~------~~~~~~~v~~d 148 (331)
....|++ .+..++..+.. +.|+++.||+ +...++..+++.+.+.+. .++++ .+ ++..+++ .++
T Consensus 72 ~~~~g~~-~~~~a~~~~~~---d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKIEA---DIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhCCC---CEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 4555665 56667776632 2899999997 557779999998876544 33333 11 2444443 445
Q ss_pred CCcCceeEeeecCCC------CCCCeEEEEEEEEChhhHhhcccC-CCC---ccc-chHHHHH-hcCcEEEEEeCceEEe
Q 020113 149 ETTGKVEKFVEKPKN------FVGNKINAGIYLLNPSVLDRIELK-PTS---IEK-EVFPEIA-AENKLFAMVLPGFWMD 216 (331)
Q Consensus 149 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~~-~~~---~~~-~~l~~l~-~~~~i~~~~~~~~~~~ 216 (331)
++ +++..+.|+|.. +...+.++|+|+|+++++..+... ..+ ++. +++ .++ ...++.++..+++|.|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 55 889888865421 114588999999999999887431 111 222 455 444 4445999998899999
Q ss_pred cCCHHHHHHHHH
Q 020113 217 IGQPKDYITGLR 228 (331)
Q Consensus 217 i~t~~d~~~a~~ 228 (331)
++||+||..++.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999865
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2.2e-20 Score=146.98 Aligned_cols=215 Identities=21% Similarity=0.329 Sum_probs=143.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|+|||||||.|+|+.|+|.+.||+|+++.|+|||+++++.|.++|+++|+||+++..+.++ |+++ ++++++.+.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence 8999999999999999999999999999999999999999999999999999999877655 5554 45788888777
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEeeec
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFVEK 160 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ek 160 (331)
.....+..+++.+++.+.+ .-++.+|.....+ +...+..+..=.++.....+.--....+.+ +++..+.-.
T Consensus 77 Y~~yNn~ySlyla~d~l~n-----tYiidsDnyl~kN---if~~~~~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v~Ig 147 (231)
T COG4750 77 YREYNNIYSLYLARDFLNN-----TYIIDSDNYLTKN---IFLTKESHSKYFAVYRSGKTNEWLLIYNSD-GKITRVDIG 147 (231)
T ss_pred HHhhhhHHHHHHHHHHhcc-----cEEeccchHhhhh---hhhcCcccceEEEEEecCCCceeEEEEcCC-CcEEEEEec
Confidence 7778899999999999964 5788999855432 222221111111222333333334455555 788776542
Q ss_pred CCCCCCCeEEEEEEEEChhhHhhc----ccCCCCcc------cchHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHH
Q 020113 161 PKNFVGNKINAGIYLLNPSVLDRI----ELKPTSIE------KEVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 161 ~~~~~~~~~~~Giy~~~~~~l~~l----~~~~~~~~------~~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~ 229 (331)
....++.+|+..|+...-+.+ +..-.+.+ .++...-+++-.+++-.. ++.-+.+++.++|.+....
T Consensus 148 ---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~ 224 (231)
T COG4750 148 ---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQK 224 (231)
T ss_pred ---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhh
Confidence 234688999999998765543 11001111 111111122112222222 3346788889998877665
Q ss_pred HH
Q 020113 230 YL 231 (331)
Q Consensus 230 ~l 231 (331)
++
T Consensus 225 ~l 226 (231)
T COG4750 225 FL 226 (231)
T ss_pred hc
Confidence 43
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.8e-19 Score=152.96 Aligned_cols=226 Identities=23% Similarity=0.313 Sum_probs=156.9
Q ss_pred CeEEEEeCCCCcccCCCCC-CCCCCCcee-CCcchHHHHHHHHHH-cCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~-~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (331)
|..||||||.|+|||||++ ..||+++++ ++++|++.+++.+.. .+.++++++++++. ..+.+.+.+........
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 5789999999999999975 699999999 568999999999998 66899999998775 45566666532221112
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCC-cEEEEeCCeecccc--HHHHHHHHh---hcCCceEEE---ecCCCCceEEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGE-PFFVLNSDVISEYP--LKQMIEFHR---GRGGEASIM---VDEPSKYGVVVM 147 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~-~~lv~~~D~i~~~~--l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~~ 147 (331)
++.++....|+-++..+.-.+....++ -++|++.|.+.... +.+.++... +++.-+|+. ..+.++|||+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 455677788998888776666544432 48899999965433 555555443 334445555 344578999998
Q ss_pred cC-----CcCceeEeeecCCCCC--------CCeEEEEEEEEChhhH-hhcccC--------------C--CCccc---c
Q 020113 148 EE-----TTGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVL-DRIELK--------------P--TSIEK---E 194 (331)
Q Consensus 148 d~-----~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~~--------------~--~~~~~---~ 194 (331)
.+ +..+|..|.|||+..+ ..++|+|+|+|+...+ +.++.. . .++.+ +
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 55 2246899999997432 3689999999998764 322110 0 00000 0
Q ss_pred ---h-------HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 020113 195 ---V-------FPEIAAENKLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 195 ---~-------l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
. .-.|.+..++.+.+.+-.|-|+|+..++.+...
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 0 112455567888888888999999998887744
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.84 E-value=8.1e-19 Score=154.60 Aligned_cols=214 Identities=17% Similarity=0.167 Sum_probs=145.9
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
.+||||+|.++||. +|+|++++|+|||+|+++.+.+++..+.++++ .+.+++.+++.+ ++.++....+.
T Consensus 49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~-~~~e~I~~~~~~----~~v~vi~~~~~ 117 (293)
T PLN02917 49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA-TDDERIAECCRG----FGADVIMTSES 117 (293)
T ss_pred EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE-CChHHHHHHHHH----cCCEEEeCCcc
Confidence 58999999999994 49999999999999999999987643333333 456677777654 24444443344
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-------ecCCCCceEEE--EcCC
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-------VDEPSKYGVVV--MEET 150 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-------~~~~~~~~~v~--~d~~ 150 (331)
...|+... ..+++.++... +.+++++||. +....++.+++.+.+. .+..+. .+++.+|+.+. .|++
T Consensus 118 ~~~GT~~~-~~a~~~l~~~~-d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~ 194 (293)
T PLN02917 118 CRNGTERC-NEALKKLEKKY-DIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ 194 (293)
T ss_pred cCCchHHH-HHHHHhccCCC-CEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence 45566554 67777775322 3899999999 4556699999988654 333322 36678899886 5766
Q ss_pred cCceeEee-----e-cCC---CCCCCeEEEEEEEEChhhHhhcc---cCCCCcccch--HHHHHhcC-cEEEEEeCceEE
Q 020113 151 TGKVEKFV-----E-KPK---NFVGNKINAGIYLLNPSVLDRIE---LKPTSIEKEV--FPEIAAEN-KLFAMVLPGFWM 215 (331)
Q Consensus 151 ~~~v~~~~-----e-k~~---~~~~~~~~~Giy~~~~~~l~~l~---~~~~~~~~~~--l~~l~~~~-~i~~~~~~~~~~ 215 (331)
|++..|. | |.. +....+.++|+|.|+.+.|..+. .++...++.+ +. ++++| ++.++..+....
T Consensus 195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~ 272 (293)
T PLN02917 195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAH 272 (293)
T ss_pred -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH-HHhCCCceEEEEeCCCCC
Confidence 7755333 2 211 12235889999999999888662 2222223221 22 34455 587777766677
Q ss_pred ecCCHHHHHHHHHHHH
Q 020113 216 DIGQPKDYITGLRLYL 231 (331)
Q Consensus 216 ~i~t~~d~~~a~~~~l 231 (331)
.|||++|+.++++.+.
T Consensus 273 GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 273 GVDTPEDVEKIEALMR 288 (293)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988764
No 63
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.83 E-value=1.9e-19 Score=167.30 Aligned_cols=224 Identities=21% Similarity=0.246 Sum_probs=152.1
Q ss_pred CeEEEEeCCCCcccCCCCCC-CCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~ 77 (331)
|.+||||||.|+||||+|.. .||+|+|+.| +|||+++++.+...++.+.+++++... ..+.+.+..+.. ..-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 57999999999999999987 7999999955 799999999999988877778887654 455556654210 11245
Q ss_pred eeCCcccCChHHHHHHHhhccCCC---CCcEEEEeCCeecccc--HHHHHHHHh---hcCCceEEE---ecCCCCceEEE
Q 020113 78 SQETEPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYP--LKQMIEFHR---GRGGEASIM---VDEPSKYGVVV 146 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~---~~~~lv~~~D~i~~~~--l~~~l~~~~---~~~~~~~i~---~~~~~~~~~v~ 146 (331)
+.++...+|+-++..+...+.... ++-++|+++|.+.... |.+.++... +.+.-+|+. ..+.++|||+.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 667788899988877766664331 1268899999965432 444444332 224444544 34457899999
Q ss_pred EcCCc--------CceeEeeecCCCCC--------CCeEEEEEEEEChhhHh-hcccC---------------CC--Ccc
Q 020113 147 MEETT--------GKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD-RIELK---------------PT--SIE 192 (331)
Q Consensus 147 ~d~~~--------~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l~-~l~~~---------------~~--~~~ 192 (331)
.++.. .+|..|.|||+..+ ..++|+|+|+|+.+.+. .++.. .. .+.
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 87531 26899999997422 34899999999987652 22110 00 000
Q ss_pred ---cchHH----------HHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 020113 193 ---KEVFP----------EIAAENKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 193 ---~~~l~----------~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
.+.++ .|.+..++.+.+.+-.|.|+++..++.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 11111 134445688888887899999999887763
No 64
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.79 E-value=5.7e-18 Score=139.23 Aligned_cols=178 Identities=21% Similarity=0.320 Sum_probs=124.9
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.++|||||+|+||++ .||+|++++|+|||+|+++.+..+++++++++++++.+.++.++.+. ... + ..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~-~~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--Y-KN 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--E-Ee
Confidence 8999999999999976 69999999999999999999999999999999988877888887652 111 2 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
....|...++..+++.+... ++|++++||+ +....+..+++.+...+..+..+ +.....
T Consensus 70 ~~g~G~~~~l~~al~~~~~~--~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~---------------- 131 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYFS--EPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKY---------------- 131 (183)
T ss_pred cCCCCHHHHHHHHhhcccCC--CCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEeccccc----------------
Confidence 45667888898888865322 2899999999 45677999999887766554433 221110
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGL 227 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~ 227 (331)
.+|.-....++.+|+-++.+.--.+ ++ ++. +..+...+.++|++|+..+.
T Consensus 132 -~~~~~~~~~~~p~g~n~~~~~~~~~--------~~----------~~~-~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 132 -PNPSIDFNGLVPAGVNIVSSKNGYQ--------EE----------EII-MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred -CCCccccccEeeeEEEEecCCCccc--------ce----------eee-eccccceEecCCHHHHHHhh
Confidence 0000011226789999998852111 01 110 22234688999999997764
No 65
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.76 E-value=2.5e-16 Score=135.28 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=134.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||+|+|.|+||. +|+|++++|+|||+|+++.+..+++++|+|+++. +.+.+.+.+ ++.++.......
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCCCC
Confidence 7999999999993 6999999999999999999999889999998863 345555554 344443322223
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE---ecCCC-----CceEEEEcCCcC
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM---VDEPS-----KYGVVVMEETTG 152 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~---~~~~~-----~~~~v~~d~~~~ 152 (331)
. |..+++..+...+...+.+.++++.||. +....++++++.+.+...+++.. ..++. +...+..|.+ |
T Consensus 70 ~-~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g 147 (238)
T TIGR00466 70 N-SGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G 147 (238)
T ss_pred C-ChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence 3 3345565565554311222788999999 44556899999886544444433 22311 1223333555 6
Q ss_pred ceeEeeec--C---------CCCCC--CeEEEEEEEEChhhHhhcc-cCCCCccc----chHHHHHhcCcEEEEEeCce-
Q 020113 153 KVEKFVEK--P---------KNFVG--NKINAGIYLLNPSVLDRIE-LKPTSIEK----EVFPEIAAENKLFAMVLPGF- 213 (331)
Q Consensus 153 ~v~~~~ek--~---------~~~~~--~~~~~Giy~~~~~~l~~l~-~~~~~~~~----~~l~~l~~~~~i~~~~~~~~- 213 (331)
++..|... | +++.. .+...|+|.|+++.|+.+. .....+|. +.++.|...-++.+...++.
T Consensus 148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~ 227 (238)
T TIGR00466 148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 227 (238)
T ss_pred eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence 66555432 1 11221 4679999999999999873 23333332 34666655567888777655
Q ss_pred EEecCCHHHH
Q 020113 214 WMDIGQPKDY 223 (331)
Q Consensus 214 ~~~i~t~~d~ 223 (331)
-..||||+|+
T Consensus 228 ~~~vdt~~d~ 237 (238)
T TIGR00466 228 SVGVDTQEDL 237 (238)
T ss_pred CCCCCChHHc
Confidence 4599999996
No 66
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.75 E-value=1.7e-16 Score=124.44 Aligned_cols=165 Identities=25% Similarity=0.431 Sum_probs=122.9
Q ss_pred CeEEEEeCCCCcccC-CCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLR-PLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~-plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.++|||+|+|+||+ + -|||++++|||||.|+++.+.+ .+++++++++++...++.++..+ ++++ +
T Consensus 1 m~~iiMAGGrGtRmg~~-----EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~v--i- 67 (177)
T COG2266 1 MMAIIMAGGRGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKV--I- 67 (177)
T ss_pred CceEEecCCcccccCCC-----cCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceE--E-
Confidence 789999999999998 5 6999999999999999999999 68999999999999999999874 3333 3
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.....|....+..+++.+.. |+|++++|+.+ +..+..+++.+.....+.. .+... |+
T Consensus 68 ~tpG~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~------------~~~~~-G~---- 126 (177)
T COG2266 68 ETPGEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAASVEVPIV------------TVVKA-GR---- 126 (177)
T ss_pred EcCCCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHhhccCcee------------Eeecc-Cc----
Confidence 34566888999999999965 89999999943 3347888887751111110 01011 21
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
..+|+-+|.+. + .++.+........++++|++||..|++.+-
T Consensus 127 -----------v~~Glni~~~~---~------------------~~~~~~i~~~~la~NVNT~eDl~~a~~ll~ 168 (177)
T COG2266 127 -----------VPVGLNIVGGK---Q------------------EEEILEIDNPELAVNVNTPEDLKKAERLLR 168 (177)
T ss_pred -----------cceeeEeecCC---C------------------cceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence 45788888761 1 112334444567889999999999988753
No 67
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.72 E-value=2e-16 Score=134.54 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=135.4
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.|||||||.|+||+. ..||+|++++|+|||+|+++.+.++ ++++++|+++++. +.+...+.. . ..+.++.
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEeC
Confidence 379999999999975 4699999999999999999999998 7999999998664 444444332 1 1122332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
. ..+..++++.++..++ ..+.++++.||+ +....+..+++.+.+.+. +.+... ...++..++++ |.+..+
T Consensus 73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~~--~~~~v~~~~~~-g~~~~~ 144 (217)
T TIGR00453 73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKAGA-AILALP--VADTLKRVEAD-GFIVET 144 (217)
T ss_pred C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCc-EEEeEe--ccceEEEEcCC-Cceeec
Confidence 2 2245688999888872 123899999999 455668999998765432 122221 12234445554 667777
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhccc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
.++.. -....+ .|.|+...+..+.. .......|....+...+ ++..++.+....+|+||+||..+..
T Consensus 145 ~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 145 VDREG---LWAAQT-PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 66421 123333 69999988866521 11111133344444444 4777777666779999999987754
No 68
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.72 E-value=3.3e-16 Score=134.05 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=135.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++++|+++... +.+.+.+.. .. ..+.++
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence 3689999999999963 46999999999999999999999865 899999998665 333333221 11 122233
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCcee
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~ 155 (331)
. .+.+..+++..+++.+++. +.++++.||. +....++.+++.+.+.+...++. ..++ +.. ++++ |.+.
T Consensus 77 ~--~~~~~~~sv~~~l~~~~~~--d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~--~~~--v~~~-g~~~ 147 (227)
T PRK00155 77 A--GGAERQDSVLNGLQALPDD--DWVLVHDAARPFLTPDDIDRLIEAAEETGAAILAVPVKDT--IKR--SDDG-GGIV 147 (227)
T ss_pred C--CcchHHHHHHHHHHhCCCC--CEEEEccCccCCCCHHHHHHHHHHHhhCCCEEEEEecccc--EEE--EcCC-Ccee
Confidence 2 2235689999999888432 2789999999 44566999999887654222222 3222 222 2443 5555
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhccc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
.+.++.. -+..-+.|.|+.+.+..+.. +...+..+....+.+.+ ++..+..+..+++|+||+||..+...+.
T Consensus 148 ~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 148 DTPDRSG----LWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred ecCChHH----heeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 5443211 12333479999988876621 11111223334444444 4766666666889999999998876554
No 69
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.72 E-value=2.4e-16 Score=134.09 Aligned_cols=208 Identities=16% Similarity=0.220 Sum_probs=136.6
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||||.|+||++ ..||+|+|++|+|||+|+++.+...+ ++++++++++........+..+. ....+.++..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--LSKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--cCCCeEEECC
Confidence 589999999999976 37999999999999999999999976 89999999876544443332211 1112333332
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
+.+...++..+++.+.....+.++++.||+ +....++.+++.+.+.+....+. ..+ +....|++ |.+..+
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~----~~~~~~~~-g~~~~~ 149 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVTD----TIKRVDDD-GVVVET 149 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEeccc----cEEEecCC-Cceeec
Confidence 235678999999988421223889999998 44556899999886554322222 211 12234555 778777
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcc---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIE---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYIT 225 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~ 225 (331)
.+..+ .....++ ++|+.+.+..+. .+...+..|....+.+.+ ++..++.+..-.+++||+||..
T Consensus 150 ~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 150 LDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 76422 2345566 899998887662 111122234455555444 4666665555669999999853
No 70
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.70 E-value=5.7e-16 Score=128.64 Aligned_cols=117 Identities=16% Similarity=0.307 Sum_probs=86.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||||||.|+||++ ||+|++++|+|||+|+++.+.+++++++++++++....+.+.+.. ..++.+... ...
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~-~~~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHN-PQY 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEEC-cCh
Confidence 79999999999975 899999999999999999999989999999998776544333321 223433222 223
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~ 130 (331)
..|...++..+++. ... .+++++++||+ +....++.+++.+.+...
T Consensus 73 ~~g~~~si~~~l~~-~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 73 AEGQSSSIKLGLEL-PVQ-SDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred hcCHHHHHHHHhcC-CCC-CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 35888999988872 211 23899999999 344568899988765444
No 71
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.70 E-value=1.3e-15 Score=138.26 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=136.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.|.+.+ +++|++++++......+.+.. ... .+.++.
T Consensus 6 v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~v~~v~ 78 (378)
T PRK09382 6 ISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-FVTLVT 78 (378)
T ss_pred ceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-eEEEeC
Confidence 3689999999999954 57999999999999999999999987 799999998665433322211 111 133332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
...+..++++.+++.+.. +.+++..||. +....++.+++.+.+.++....+ +.+...|+...+|. ..+..
T Consensus 79 --gG~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR--~~l~~ 151 (378)
T PRK09382 79 --GGATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDR--EGLKL 151 (378)
T ss_pred --CCchHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCc--ccEEE
Confidence 234467899999998854 2899999998 34455888888776553333333 66776776555554 34433
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
+ ++|+.+ +.+.+.........+ .|..+.+...| ++..++-+..|..+++|+||..++..+.
T Consensus 152 ~-QTPQ~f------------~~~~l~~a~~~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 152 I-QTPQLS------------RTKTLKAAADGRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred E-ECCCCC------------CHHHHHHHHhCCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 3 667643 222222211111222 45556666666 5778888888999999999999987653
No 72
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.69 E-value=3.2e-16 Score=126.72 Aligned_cols=119 Identities=28% Similarity=0.429 Sum_probs=92.9
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
|||||||.|+||+. ||+|++++|+|||+|+++.+.++++++|+|++++ +++..++.. ++.++... ...
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~-~~~ 68 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVD-PEP 68 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE--STS
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEe-ccc
Confidence 69999999999964 9999999999999999999999999999999987 345544433 34555333 233
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEE
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
..|.+.+++.++..+... ++|++++||+. ....++.+++.+.+.+.++++.
T Consensus 69 ~~G~~~sl~~a~~~~~~~--~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPSS--EPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp SCSHHHHHHHHHHTSTTS--SEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred cCChHHHHHHHHHhcccC--CCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 589999999999998422 29999999994 3456899999988766654433
No 73
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.69 E-value=6.4e-16 Score=128.02 Aligned_cols=119 Identities=22% Similarity=0.390 Sum_probs=91.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||++ ||+|++++|+|||+|+++.+...++++++|++++......+++.. .+..+ +..+
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~-~~~~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVV-VINP 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEE-EeCC
Confidence 5789999999999987 899999999999999999999998999999998766555444432 23332 2223
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~ 130 (331)
....|+..++..+++.+.. ..+.+++++||+ +....+..+++.+.+..+
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3446899999999998863 123899999999 345568888887764443
No 74
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.69 E-value=2.4e-15 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=132.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.+||||+|.|+||. +|+|++++|+|||+|+++.+.+++ +++|+|+++ .+.+.+++.++ +..+.+..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~ 69 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLR 69 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeC
Confidence 358999999999994 499999999999999999999987 788887663 34455555442 33222222
Q ss_pred C----CcccCChHHHHHHHhhccCC--CCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEe--cCCCCceEEEEcC
Q 020113 80 E----TEPLGTAGPLALARDKLIDD--SGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMV--DEPSKYGVVVMEE 149 (331)
Q Consensus 80 ~----~~~~G~~~al~~~~~~~~~~--~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~--~~~~~~~~v~~d~ 149 (331)
. ....|+.+++..+++.++.. ..+.++++.||+ +....+.++++.+.+.++++++.+ .....+.....++
T Consensus 70 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
T cd02513 70 PAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDD 149 (223)
T ss_pred ChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeecc
Confidence 1 23347788999998887531 113899999999 556679999999887766655552 1222222222222
Q ss_pred CcC-ceeEeeecC-----CCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHH
Q 020113 150 TTG-KVEKFVEKP-----KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKD 222 (331)
Q Consensus 150 ~~~-~v~~~~ek~-----~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d 222 (331)
+ + .+..+.++. +.+.....++|+|+++.+.+..... .+ .+++..++.+. ...||+|++|
T Consensus 150 ~-~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~--------~~-----g~~~~~~~~~~~~~~dI~~~~D 215 (223)
T cd02513 150 N-GLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS--------FF-----GGKTGPYEMPRERSIDIDTEED 215 (223)
T ss_pred C-CceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------cc-----CCCeEEEEeCccceeCCCCHHH
Confidence 1 2 122221211 2233457788999999997655211 01 34677777765 4889999999
Q ss_pred HHHHHH
Q 020113 223 YITGLR 228 (331)
Q Consensus 223 ~~~a~~ 228 (331)
+..+..
T Consensus 216 ~~~ae~ 221 (223)
T cd02513 216 FELAEA 221 (223)
T ss_pred HHHHHH
Confidence 988754
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.67 E-value=1.8e-15 Score=124.87 Aligned_cols=107 Identities=26% Similarity=0.379 Sum_probs=84.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. ||+|++++|+|||+|+++.+... +++++|++++.... ... .+..+.. ..
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~-~~ 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIP-DE 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEee-CC
Confidence 6799999999999976 89999999999999999999988 89999999876543 111 2333322 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHH
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFH 125 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~ 125 (331)
....|...++..++..++.+ .+++++||+ +....+..+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAAPAD---WVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEeCCcCCCCHHHHHHHHHhh
Confidence 34568999999999988532 899999999 3445588888876
No 76
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.67 E-value=1.9e-15 Score=125.68 Aligned_cols=121 Identities=14% Similarity=0.231 Sum_probs=86.8
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHh-hhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF-EKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~v~~~~ 79 (331)
+.+||||||.|+||+. +|.|++++|+|||+|+++.+.+.++++++|+++++.+.+. .+.+. ....+..+...
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~- 73 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCC- 73 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEEC-
Confidence 4689999999999976 8999999999999999999888889999999987654322 11111 11122333222
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhc
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGR 128 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~ 128 (331)
+....|.+.+++.+++.+.....+.+++++||+ +....+..+++.+.+.
T Consensus 74 ~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 74 RDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred CChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 233458889999999987432233899999999 3445578888876543
No 77
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.66 E-value=7.6e-15 Score=118.57 Aligned_cols=185 Identities=17% Similarity=0.297 Sum_probs=127.7
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeC
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
.+||||||+|+||+. +|.|+|+.|+|+++++++...+++++++++++++.. +..+.... ..+..+.+. +
T Consensus 7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~n-p 76 (199)
T COG2068 7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVN-P 76 (199)
T ss_pred EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeC-c
Confidence 589999999999985 999999999999999999999999999999999863 22222222 123344333 2
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
+-..|.+.|+..++.....+.+ .+++..||+ +...++..+++.+...+ . .+.... . |
T Consensus 77 d~~~Gls~Sl~ag~~a~~~~~~-~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~-~v~p~~---------~---g------ 135 (199)
T COG2068 77 DYAQGLSTSLKAGLRAADAEGD-GVVLMLGDMPQVTPATVRRLIAAFRARG-A-AVRPVY---------G---G------ 135 (199)
T ss_pred chhhhHhHHHHHHHHhcccCCC-eEEEEeCCCCCCCHHHHHHHHHhccccC-c-eeeeec---------c---C------
Confidence 3456999999999999987653 899999999 56778999999887652 1 111000 0 1
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcE--EEEEe-CceEEecCCHHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKL--FAMVL-PGFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i--~~~~~-~~~~~~i~t~~d~~~a~~~~ 230 (331)
+. .+-.+|++++|..+..-.-+ .. .+.++.+..+ ...+. .+...|||||+||.+++..+
T Consensus 136 -~r---------G~Pv~~~~~~~~~l~~l~GD--~G-~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 136 -AR---------GHPVLLSKDLFPALARLSGD--VG-ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred -Cc---------CCceeechhHHHHHhhcCCc--hh-HHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 00 22267788877666321111 11 3344444443 33334 66799999999999998765
No 78
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.64 E-value=6.5e-15 Score=122.84 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=81.6
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+. .++++++|+++.+.+.+ .. .+..+.....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~----~~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AA----FGLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh----cCCcEEeCCC
Confidence 6799999999999953 4899999999999999999998 67999999987653322 12 1333321111
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRG 127 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~ 127 (331)
....|...+++.+++..+.+ .+++++||+ + ....+..+++.+.+
T Consensus 71 ~~~~g~~~~i~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 71 ADFPGPLAGILAGLKQARTE---WVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 22368889999998865432 899999999 3 34558888887643
No 79
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.64 E-value=1.2e-14 Score=124.57 Aligned_cols=211 Identities=11% Similarity=0.200 Sum_probs=133.1
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
.+||||||.|+||+. +.||+|++++|+|||+|+++.+..++ +++++|+++... ..+++++.+++.. ...+.++.
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 79 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK 79 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC
Confidence 589999999999974 56999999999999999999999864 899999987643 3344444442211 01232332
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
...+..+++..++..+... +.++++.||. +....++++++.+.+.++..++. +.+ .+...+ + +.+..
T Consensus 80 --~g~~r~~sv~~gl~~~~~~--d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d----ti~~~~-~-~~~~~ 149 (230)
T PRK13385 80 --GGTERQESVAAGLDRIGNE--DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD----TVKRVK-D-KQVIE 149 (230)
T ss_pred --CCchHHHHHHHHHHhccCC--CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc----eEEEEc-C-CeeEe
Confidence 2234458999999887532 2678889999 34455899999887665443333 222 122222 2 33433
Q ss_pred eeecCCCCCCCeEEEEEEEEChhhHhhc-cc---CCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 020113 157 FVEKPKNFVGNKINAGIYLLNPSVLDRI-EL---KPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 231 (331)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~~~l 231 (331)
..++. .-+..-+.|.|+.+.+... .. ....+ .+....+...| ++..++-+.....|+||+|+..|...+.
T Consensus 150 ~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 150 TVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred ccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 33321 1222334688888877654 21 11222 33334444444 4777776667889999999999976653
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.62 E-value=1.2e-14 Score=120.57 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=83.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. .+++++|++++.... +... ..+..+.....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5789999999999963 48999999999999999999986 489999988655322 1111 12333322222
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe-e-ccccHHHHHHHHhh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRG 127 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~-i-~~~~l~~~l~~~~~ 127 (331)
....|+..+++.+++.+..+ .+++++||+ + ....++.+++.+.+
T Consensus 70 ~~~~g~~~si~~al~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWAGTD---WVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 34579999999999988432 899999999 3 44457888887654
No 81
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.60 E-value=2.5e-15 Score=127.61 Aligned_cols=124 Identities=19% Similarity=0.347 Sum_probs=85.6
Q ss_pred chHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc---------------ccCCccCCCceEecceEEcCCc
Q 020113 194 EVFPEIAAENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK---------------NSSSKLATGSNIIGNVLVHEGA 258 (331)
Q Consensus 194 ~~l~~l~~~~~i~~~~~~~~~~~i~t~~d~~~a~~~~l~~~~~---------------~~~~~i~~~~~i~~~~~i~~~~ 258 (331)
+.++.|+.++ ++..++||.|+ ++|+++++.+|..... .....|++++.|.++++|++++
T Consensus 32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~ 105 (231)
T TIGR03532 32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNA 105 (231)
T ss_pred hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCC
Confidence 5666666555 78888999999 9999999999977421 1223445555554444444444
Q ss_pred ------------EECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-cCcEEcc
Q 020113 259 ------------KIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS-NGAVVLP 316 (331)
Q Consensus 259 ------------~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i-~~~~v~~ 316 (331)
.||++|.|+ .++.|. +++||++|.||.+++|.+ +++|+++|.||.++++ .++.|++
T Consensus 106 ~I~~~~~I~~~~~IG~~~~I~--~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~ 183 (231)
T TIGR03532 106 VIMMGAVINIGAEIGEGTMID--MNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGK 183 (231)
T ss_pred EEecCcccCCCeEECCCCEEc--cccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECC
Confidence 445555555 556664 788888888888888874 4788888888888887 4777777
Q ss_pred CeEEccCcc
Q 020113 317 HKEIKSSIV 325 (331)
Q Consensus 317 ~~~i~~~~~ 325 (331)
+++|+++..
T Consensus 184 ~~~Igagsv 192 (231)
T TIGR03532 184 GAVVAAGAI 192 (231)
T ss_pred CCEECCCCE
Confidence 777775543
No 82
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.57 E-value=9.9e-14 Score=116.15 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=81.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee-
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ- 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~- 79 (331)
+.+||||||.|+||+. +|+|++++|+|||+|+++.+... +++++|++++. +....... .+ +.++.
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~--~~~i~~ 73 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PG--CHWLRE 73 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CC--CeEecC
Confidence 4689999999999965 89999999999999999999865 68998887632 22222111 12 33333
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhh
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRG 127 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~ 127 (331)
.....|...+++.++..++.+ .++|++||+ +....+..+++.+.+
T Consensus 74 ~~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 74 PPPSQGPLVAFAQGLPQIKTE---WVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCCChHHHHHHHHHhCCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 233468999999999988642 899999999 344558888887643
No 83
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.57 E-value=8e-13 Score=112.27 Aligned_cols=200 Identities=21% Similarity=0.228 Sum_probs=134.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE- 80 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~- 80 (331)
|||+|+|.++||. +|.+++++|+|||.|+++.+.+++ +++|+|.++ .+++.+...+ ++..+.+...
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCEeEEeChH
Confidence 7999999999993 599999999999999999999987 677777554 2345555443 3555544321
Q ss_pred ---CcccCChHHHHHHHhhccC-CCCCcEEEEeCCee--ccccHHHHHHHHhhcCCceEEEecC---CCCceEEEEcCCc
Q 020113 81 ---TEPLGTAGPLALARDKLID-DSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGEASIMVDE---PSKYGVVVMEETT 151 (331)
Q Consensus 81 ---~~~~G~~~al~~~~~~~~~-~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~i~~~~---~~~~~~v~~d~~~ 151 (331)
....|+.+++..+++.++. ...+.++++.+|.. ...+++.+++.+.+.+++..+.+.+ +..+. ...+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~-~~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRA-FKLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHh-eEECCC-
Confidence 2356788999999988743 11237999999993 4467999999998866666555222 22222 233444
Q ss_pred CceeEeeecC-----C-CCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 020113 152 GKVEKFVEKP-----K-NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYI 224 (331)
Q Consensus 152 ~~v~~~~ek~-----~-~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~ 224 (331)
|.+..+.... + -+.....+.++|+++++.+..-. .++ .++...|+++. ...|||+++|+.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~--------~~~-----~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG--------PIF-----SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC--------Ccc-----CCCcEEEEeCccceeCCCCHHHHH
Confidence 5554443211 1 11223568999999999765411 011 34677787765 488999999999
Q ss_pred HHHHH
Q 020113 225 TGLRL 229 (331)
Q Consensus 225 ~a~~~ 229 (331)
.|...
T Consensus 215 ~ae~l 219 (222)
T TIGR03584 215 RAELL 219 (222)
T ss_pred HHHHH
Confidence 88654
No 84
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.55 E-value=6.4e-13 Score=114.51 Aligned_cols=208 Identities=13% Similarity=0.202 Sum_probs=123.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+... ++++++++++++. +.++..+.+ ++..+.++
T Consensus 25 i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v 97 (252)
T PLN02728 25 VSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFA 97 (252)
T ss_pred eEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEc
Confidence 3589999999999974 5799999999999999999999984 7999999998764 333444433 23334433
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCC--e--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCc
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--V--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGK 153 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D--~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~ 153 (331)
....+..++++.++..+..+ ..+|+.+| . +....+..+++...+.++..+.+ +.+ .+..++++ +.
T Consensus 98 --~gg~~r~~SV~~gl~~l~~~---~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~d----tik~v~~~-~~ 167 (252)
T PLN02728 98 --LPGKERQDSVFNGLQEVDAN---SELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKA----TIKEANSD-SF 167 (252)
T ss_pred --CCCCchHHHHHHHHHhccCC---CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchh----hEEEecCC-Cc
Confidence 23345678899999988543 34566666 4 34455788998877665433333 211 11122222 33
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEChhhHhhc-c---cCCCCcccchHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 020113 154 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-E---LKPTSIEKEVFPEIAAEN-KLFAMVLPGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~---~~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~d~~~a~~ 228 (331)
+....+... -+.----..|+.+.+... + .+... ..|....+...| ++...+-+..-+-|.||+|+..+..
T Consensus 168 v~~t~~R~~----l~~~QTPQ~F~~~~l~~a~~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~ 242 (252)
T PLN02728 168 VVKTLDRKR----LWEMQTPQVIKPELLRRGFELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAER 242 (252)
T ss_pred eeeccChHH----eEEEeCCccchHHHHHHHHHHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHH
Confidence 332211100 001111145666655443 1 11111 133333444444 4555444445668999999998876
Q ss_pred HH
Q 020113 229 LY 230 (331)
Q Consensus 229 ~~ 230 (331)
.+
T Consensus 243 ~l 244 (252)
T PLN02728 243 IL 244 (252)
T ss_pred HH
Confidence 54
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.54 E-value=1.6e-13 Score=125.11 Aligned_cols=186 Identities=16% Similarity=0.248 Sum_probs=116.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+... +++++++++...+.+.+++.. ..+.....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~~------~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFPG------LPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhccC------CcEEecCC
Confidence 4689999999999951 489999999999999999999864 899998776554444333221 22221122
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEee
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKFV 158 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~~ 158 (331)
....|...+++.+++.+..+ .+++++||+ +....+..+++.+.+.++++.+.. .. ++.
T Consensus 75 ~g~~G~~~si~~gl~~~~~~---~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~~-----------~g--~~g---- 134 (366)
T PRK14489 75 PGFQGPLSGILAGLEHADSE---YLFVVACDTPFLPENLVKRLSKALAIEGADIAVPH-----------DG--ERA---- 134 (366)
T ss_pred CCCCChHHHHHHHHHhcCCC---cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEEe-----------cC--CCc----
Confidence 22358889999999987532 799999998 344557888887655444321110 10 110
Q ss_pred ecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC---ceEEecCCHHHHHHHHHH
Q 020113 159 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP---GFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~---~~~~~i~t~~d~~~a~~~ 229 (331)
.| -.| +|+++.+..+........+.+..++. ...+....++ ..+.++|||+||.++...
T Consensus 135 ----~P-----l~a--iy~~~~~~~l~~~l~~G~~~l~~~l~-~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~ 196 (366)
T PRK14489 135 ----HP-----LFA--LYHRSCLPALRRYLAEGERRLFDFFQ-RQRVRYVDLSTQKDAFFNVNTPEDLEQLRAI 196 (366)
T ss_pred ----ee-----eEE--EEcHHHHHHHHHHHHhCCccHHHHHH-hCCcEEEeccCCccccccCCCHHHHHHHhhh
Confidence 01 112 45777766653322222333444332 2334444443 347899999999877554
No 86
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.54 E-value=5.7e-14 Score=99.82 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=74.5
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
|++++.|++++.|. ++.|+++|.|+ +++.|++|+++++|.||+++.|.+ |+|++++.|++++.+++|++++++.|+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~--~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~ 77 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIG--KRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVE 77 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEEC--CCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeC
Confidence 67889999999997 79999999999 889999999999999999999988 999999999999999999999999999
Q ss_pred cCc
Q 020113 322 SSI 324 (331)
Q Consensus 322 ~~~ 324 (331)
++.
T Consensus 78 ~~~ 80 (81)
T cd04652 78 AGT 80 (81)
T ss_pred CCC
Confidence 864
No 87
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.6e-12 Score=105.97 Aligned_cols=214 Identities=22% Similarity=0.289 Sum_probs=151.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (331)
+||+|.=.+|||.. |||-.|+|+|||.|+.++..++|.++++|.+. .+.+.+.+.++ |.++.......
T Consensus 6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~~----G~~avmT~~~h 73 (247)
T COG1212 6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATD--DERIAEAVQAF----GGEAVMTSKDH 73 (247)
T ss_pred EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHh----CCEEEecCCCC
Confidence 67888878888855 99999999999999999999999999999885 45677788774 55666666666
Q ss_pred ccCChHHHHHHHhhccCCCCCcEEEEeCCeec--cccHHHHHHHHhhcCCce-EEE--ec------CCCCceEEEEcCCc
Q 020113 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGRGGEA-SIM--VD------EPSKYGVVVMEETT 151 (331)
Q Consensus 83 ~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~-~i~--~~------~~~~~~~v~~d~~~ 151 (331)
+.|+ +.+..+...+.....+.++=+-||.-+ ...+.++++...+..+++ |+. .. +|. --.+..|.+
T Consensus 74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN-~VKvV~d~~- 150 (247)
T COG1212 74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPN-VVKVVLDKE- 150 (247)
T ss_pred CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCC-cEEEEEcCC-
Confidence 6666 778888888754433366668999943 345888888887765554 444 11 222 233445666
Q ss_pred CceeEeeecCC--C-----CCCCeEEEEEEEEChhhHhhc-ccCCCCccc----chHHHHHhcCcEEEEEeCceE-EecC
Q 020113 152 GKVEKFVEKPK--N-----FVGNKINAGIYLLNPSVLDRI-ELKPTSIEK----EVFPEIAAENKLFAMVLPGFW-MDIG 218 (331)
Q Consensus 152 ~~v~~~~ek~~--~-----~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~----~~l~~l~~~~~i~~~~~~~~~-~~i~ 218 (331)
|+.+.|...|- . ...-+.-.|+|.|+..+++.+ .-.+..+|+ +-|+.|-...+|.+....... ..+|
T Consensus 151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence 88888865421 1 123467899999999999877 334444432 235555555678888887554 8999
Q ss_pred CHHHHHHHHHHHH
Q 020113 219 QPKDYITGLRLYL 231 (331)
Q Consensus 219 t~~d~~~a~~~~l 231 (331)
||+||-++.+.+.
T Consensus 231 T~EDLe~v~~~~~ 243 (247)
T COG1212 231 TPEDLERVRKILS 243 (247)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999876654
No 88
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.52 E-value=1.2e-12 Score=112.51 Aligned_cols=186 Identities=18% Similarity=0.240 Sum_probs=113.1
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh--HHHHHHHHHhhhccCeEEEEee
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
|||||+|.|+|| + +|+|++++|+||++|+++.+..++ +++++|+++... +.+.+++.. .++.+ +.
T Consensus 2 aiIlA~G~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~--v~ 69 (233)
T cd02518 2 AIIQARMGSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKV--FR 69 (233)
T ss_pred EEEeeCCCCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeE--EE
Confidence 799999999999 3 499999999999999999999987 899999998664 455555543 23333 22
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.+. .+.......++.... .+.++++.||+ +....++++++.+.+.+.+.+.. . +
T Consensus 70 ~~~-~~~l~~~~~~~~~~~---~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~------------~---~----- 125 (233)
T cd02518 70 GSE-EDVLGRYYQAAEEYN---ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSN------------T---L----- 125 (233)
T ss_pred CCc-hhHHHHHHHHHHHcC---CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEec------------C---C-----
Confidence 121 122222232322222 22899999999 44556899999887655432221 0 0
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcc-cCCCCcccchHHHHHhcCc--EEEEEeCc-------eEEecCCHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAAENK--LFAMVLPG-------FWMDIGQPKDYITGL 227 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~l~~l~~~~~--i~~~~~~~-------~~~~i~t~~d~~~a~ 227 (331)
+ .+..+..+..+|+...+..+. .....+.+..+..++++.. +....++. ..+|+|||+||..+.
T Consensus 126 --~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~ 199 (233)
T cd02518 126 --P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIK 199 (233)
T ss_pred --C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHH
Confidence 0 011233445678777776552 2223333444322333322 33322322 278999999997776
Q ss_pred HHH
Q 020113 228 RLY 230 (331)
Q Consensus 228 ~~~ 230 (331)
..+
T Consensus 200 ~~~ 202 (233)
T cd02518 200 EIY 202 (233)
T ss_pred HHH
Confidence 543
No 89
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.51 E-value=7.7e-13 Score=109.03 Aligned_cols=179 Identities=18% Similarity=0.283 Sum_probs=110.7
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||+|.|+|| . +|+|++++|+||++|+++.|....- .++|....+.+. +.. .+.++ +..
T Consensus 5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~v--v~D 67 (192)
T COG0746 5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPV--VPD 67 (192)
T ss_pred ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCce--eec
Confidence 67999999999999 5 8999999999999999999999854 555555544331 221 23334 333
Q ss_pred Cccc-CChHHHHHHHhhccCCCCCcEEEEeCCe-ecc-ccHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 81 TEPL-GTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 81 ~~~~-G~~~al~~~~~~~~~~~~~~~lv~~~D~-i~~-~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
..+. |....++.++.....+ .+++++||+ +.. .-+..+++...+.++. .+. .-++ |++.-
T Consensus 68 ~~~~~GPL~Gi~~al~~~~~~---~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~-~~~-----------~~~~-g~~~P- 130 (192)
T COG0746 68 ELPGFGPLAGILAALRHFGTE---WVLVLPCDMPFIPPELVERLLSAFKQTGAA-IVP-----------AHDD-GRLEP- 130 (192)
T ss_pred CCCCCCCHHHHHHHHHhCCCC---eEEEEecCCCCCCHHHHHHHHHhhcccCCc-EEE-----------eCCC-Cceee-
Confidence 3333 9999999999999854 899999999 333 3366777766544421 111 1111 33211
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEe--Cc--eEEecCCHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVL--PG--FWMDIGQPKDYITGLR 228 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~--~~--~~~~i~t~~d~~~a~~ 228 (331)
-.++| +..+...+..-....++ -+..+++......+.+ .. .|..++||+||.....
T Consensus 131 ------------l~aly--~~~l~~~l~~~l~~g~~-~~~~~l~~~~~~~v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 131 ------------LFALY--HRALLPALEEYLAKGER-RLSALLERLGTEYVEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred ------------EEEEe--hHHHHHHHHHHHHhCCc-cHHHHHHHCCcEEEecCcCCcccccccCCHHHHHHHhc
Confidence 23444 66666655321112221 2222333333333333 22 5889999999987653
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.50 E-value=1.6e-12 Score=108.37 Aligned_cols=178 Identities=16% Similarity=0.240 Sum_probs=105.2
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCC-cchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g-~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
+.+||||||.|+||+. +|+|++++| +|||+|+++.+... +++++|++++. .. . ....+..-.
T Consensus 9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~ 71 (196)
T PRK00560 9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEK 71 (196)
T ss_pred ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecC
Confidence 4689999999999965 899999999 99999999999887 88999888751 11 1 112221111
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-ccc-cHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCceeEe
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEY-PLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVEKF 157 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~-~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~~~ 157 (331)
.....|....+..++...+.+ .++|++||+. .+. .++.++. +.+.. .+....+ ++.
T Consensus 72 ~~~~~gpl~gi~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~---~~~~~------------~~~~~~~-~~~--- 129 (196)
T PRK00560 72 ESDLFSPLFGIINAFLTLQTP---EIFFISVDTPFVSFESIKKLCG---KENFS------------VTYAKSP-TKE--- 129 (196)
T ss_pred CCCCCCcHHHHHHHHHhcCCC---eEEEEecCcCcCCHHHHHHHHh---cCCCC------------EEEEccC-Cce---
Confidence 223456666777666655432 8999999993 343 3556532 11111 1111111 110
Q ss_pred eecCCCCCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHHHH
Q 020113 158 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLP--GFWMDIGQPKDYITGLRLY 230 (331)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~d~~~a~~~~ 230 (331)
.| -..+|+++.+..+..-..+..+.+ ..+++...+....++ +.|.|+|||+||.++.+.+
T Consensus 130 -----~P-------l~al~~~~~~~~l~~~l~~~~~~~-~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 130 -----HY-------LISLWHQSLLNALIYALKTQNYRL-SDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred -----ee-------eEEEEcHHHHHHHHHHHHhCCccH-HHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 01 115788887776632111111112 223333344444443 3588999999998875543
No 91
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.48 E-value=3.8e-13 Score=95.11 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=72.1
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-cEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-AVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i 320 (331)
+++++.|++++.|++ +.||++|.|+ +++.|++|+|+++|.|++++.|.+ |+|++++.|++++.+.+ +++++++++
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig--~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i 77 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIG--DGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVV 77 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEEC--CCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEE
Confidence 678999999999986 9999999999 889999999999999999999998 99999999999999987 999999988
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 78 ~~ 79 (79)
T cd03356 78 ED 79 (79)
T ss_pred Cc
Confidence 74
No 92
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.46 E-value=2.9e-12 Score=107.83 Aligned_cols=208 Identities=17% Similarity=0.233 Sum_probs=120.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHc-CCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEe
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (331)
+.|||+|||.|+||+. ..||.+++++|+|+|.|+++.|.+. .+++|++++.++. +.+++.+.+ .. +.++
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~--v~iv 71 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KK--VKIV 71 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TT--EEEE
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CC--EEEe
Confidence 3589999999999986 7899999999999999999999985 4899999997765 444444443 22 3333
Q ss_pred eCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhh-cCCceEEE-ecCCCCceEEEEcCCcCce
Q 020113 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRG-RGGEASIM-VDEPSKYGVVVMEETTGKV 154 (331)
Q Consensus 79 ~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~-~~~~~~i~-~~~~~~~~~v~~d~~~~~v 154 (331)
. ....-.+|+++++..+.... +.+++.-+=- +....+.++++...+ .++....+ +.+ .+...+++ +.+
T Consensus 72 ~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~D----Tik~v~~~-~~v 143 (221)
T PF01128_consen 72 E--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTD----TIKRVDDD-GFV 143 (221)
T ss_dssp E----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SS----EEEEESTT-SBE
T ss_pred c--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccc----cEEEEecC-Ccc
Confidence 2 23345689999999987654 2666665554 334458889988776 44433333 222 23344444 555
Q ss_pred eEeeecCCCCCCCeEEEEEEEEChhhHhhcccC----CCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHHHHH
Q 020113 155 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELK----PTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITGLRL 229 (331)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a~~~ 229 (331)
.+..+... -+.----..|+.+.+...-.. ...+ .|--..+.. ..++...+-+..=+=+.+|+|+..|...
T Consensus 144 ~~tldR~~----l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~l 218 (221)
T PF01128_consen 144 TETLDRSK----LWAVQTPQAFRFELLLEAYEKADEEGFEF-TDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEAL 218 (221)
T ss_dssp EEEETGGG----EEEEEEEEEEEHHHHHHHHHTHHHHTHHH-SSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHH
T ss_pred cccCCHHH----eeeecCCCeecHHHHHHHHHHHHhcCCCc-cCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHH
Confidence 55443211 111222357777776654111 1112 121122222 3346555544345578999999988665
Q ss_pred H
Q 020113 230 Y 230 (331)
Q Consensus 230 ~ 230 (331)
+
T Consensus 219 l 219 (221)
T PF01128_consen 219 L 219 (221)
T ss_dssp H
T ss_pred h
Confidence 4
No 93
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=5.1e-13 Score=94.64 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=71.9
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-cEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-AVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i 320 (331)
+++++.|+++++|+++++|+++|.|+ +++.|.+|++++++.|++++.|.+ |++++++.|++++.+.+ +++++++++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig--~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~~~~ig~~~~i 78 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIG--DGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEEC--CCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEecCEEECCceEE
Confidence 57888999999999999999999999 889999999999999999999999 99999999999999976 888888887
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 79 ~~ 80 (80)
T cd05824 79 KD 80 (80)
T ss_pred CC
Confidence 63
No 94
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.44 E-value=2.3e-11 Score=101.88 Aligned_cols=206 Identities=16% Similarity=0.251 Sum_probs=124.8
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEee
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (331)
-+||||||.|+||+. ..||.+++++|+||++|+++.|.... +++|+|++.++. +.+.++.. ...+.++.++.
T Consensus 6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~ 79 (230)
T COG1211 6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK 79 (230)
T ss_pred EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEec
Confidence 589999999999998 89999999999999999999999876 899999998744 44444442 12233454443
Q ss_pred CCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE-ecCCCCceEEEEcCCcCceeE
Q 020113 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM-VDEPSKYGVVVMEETTGKVEK 156 (331)
Q Consensus 80 ~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~-~~~~~~~~~v~~d~~~~~v~~ 156 (331)
....-.++++.++..+....++.+|+.-+== +....++++++...+.++-.+++ +.+ .....+.+ +.+.+
T Consensus 80 --GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~D----Tik~~~~~-~~i~~ 152 (230)
T COG1211 80 --GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTD----TLKRVDAD-GNIVE 152 (230)
T ss_pred --CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccC----cEEEecCC-CCeee
Confidence 3445678999999999742222444444333 33445888886554444443443 332 22233333 45554
Q ss_pred eeecC-----CCCCCCeEEEEEEEEChhhHhhccc----CCCCcccchHHHHHh-cCcEEEEEeCceEEecCCHHHHHHH
Q 020113 157 FVEKP-----KNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAA-ENKLFAMVLPGFWMDIGQPKDYITG 226 (331)
Q Consensus 157 ~~ek~-----~~~~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~~~l~~l~~-~~~i~~~~~~~~~~~i~t~~d~~~a 226 (331)
..+.. ++| ..|+.+.|..... ...++-.| -..+.. ..++....=+-+-+-+.+|+|+..|
T Consensus 153 t~~R~~l~~~QTP---------Q~F~~~~L~~a~~~a~~~~~~~tDd-as~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a 222 (230)
T COG1211 153 TVDRSGLWAAQTP---------QAFRLELLKQALARAFAEGREITDD-ASAIEKAGGPVSLVEGSADNFKITTPEDLEIA 222 (230)
T ss_pred ccChhhhhhhhCC---------ccccHHHHHHHHHHHHhcCCCcCCH-HHHHHHcCCCeEEEecCcceeEecCHHHHHHH
Confidence 43321 123 4566666654311 11222222 111222 2356545444456789999999988
Q ss_pred HHHH
Q 020113 227 LRLY 230 (331)
Q Consensus 227 ~~~~ 230 (331)
...+
T Consensus 223 ~~il 226 (230)
T COG1211 223 EAIL 226 (230)
T ss_pred HHHh
Confidence 6643
No 95
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.2e-13 Score=122.73 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=72.0
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i 320 (331)
||.++.|+.++.|. |++||++|.|| ++++|++|+|+++|+||.||.|++ |+|+++++|+.|+.+ .+|+++.++++
T Consensus 336 ig~gT~Ig~g~~I~-NSVIG~~c~Ig--sN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~i~~~~~l~~g~vl~~~VVv 411 (673)
T KOG1461|consen 336 IGAGTKIGSGSKIS-NSVIGANCRIG--SNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVKIGEGAILKPGSVLGFGVVV 411 (673)
T ss_pred ecccccccCCCeee-cceecCCCEec--CceEEeeeeeecCcEECCCceEee-eEeecCcEeCCCcccCCCcEEeeeeEe
Confidence 44455555555553 89999999999 999999999999999999999999 999999999999999 58999999999
Q ss_pred ccCccCC
Q 020113 321 KSSIVNP 327 (331)
Q Consensus 321 ~~~~~~~ 327 (331)
+++...+
T Consensus 412 ~~~~~l~ 418 (673)
T KOG1461|consen 412 GRNFVLP 418 (673)
T ss_pred CCCcccc
Confidence 9887665
No 96
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.39 E-value=9.6e-12 Score=113.76 Aligned_cols=107 Identities=21% Similarity=0.379 Sum_probs=77.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
|.+||||||+|+||+. +|+|++++|+|||+|+++.+... +++++|+++.... . .+.. .++.+.. ..
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~-d~ 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLIT-DS 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEe-CC
Confidence 3689999999999965 89999999999999999999875 7888887765422 1 1121 2344432 22
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHH
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEF 124 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~ 124 (331)
....|...++..++...+.+ .+++++||+ +....++.+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~~~~---~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHHPDA---AWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhCCCC---cEEEEeCCcCCCCHHHHHHHHHh
Confidence 33468888888887765432 899999999 334447777765
No 97
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.38 E-value=1.1e-11 Score=111.28 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=79.1
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (331)
+.+||||||.|+||+. +|+|+++.|+||++|+++.|... +++++|++++.. .. ... .....+. ...
T Consensus 161 i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~~~v~~I-~D~ 226 (346)
T PRK14500 161 LYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----LENLPTL-PDR 226 (346)
T ss_pred ceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----ccCCeEE-eCC
Confidence 3589999999999965 99999999999999999998875 789988876432 11 100 0012222 223
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCee-cc-ccHHHHHHHHh
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHR 126 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~-~~l~~~l~~~~ 126 (331)
....|...+++.++...+.. ++++++||+. .+ ..+..+++.+.
T Consensus 227 ~~~~GPlagI~aaL~~~~~~---~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 227 GESVGPISGILTALQSYPGV---NWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CCCCChHHHHHHHHHhCCCC---CEEEEECCcCCCCHHHHHHHHHhhh
Confidence 34569999999999986543 7899999993 33 44777777653
No 98
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.36 E-value=6.4e-12 Score=88.76 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=70.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEI 320 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 320 (331)
+++++.|++++.|. ++.|+++|.|+ +++.|.+|++++++.|++++.|.+ ++|+++++|++++.+. ++++++++.|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig--~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~i 77 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIG--KNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVI 77 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEEC--CCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEe
Confidence 67889999999997 79999999999 889999999999999999999997 9999999999999996 7889888887
Q ss_pred cc
Q 020113 321 KS 322 (331)
Q Consensus 321 ~~ 322 (331)
++
T Consensus 78 g~ 79 (79)
T cd05787 78 GD 79 (79)
T ss_pred Cc
Confidence 64
No 99
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.2e-12 Score=112.73 Aligned_cols=74 Identities=28% Similarity=0.383 Sum_probs=70.2
Q ss_pred ceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 251 NVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 251 ~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
...+|..+.|+++|.|+ +++.|++|+||++|.||+.+.|.+ |+|.+|++||+|+.|.+|+||++++|+++.+..
T Consensus 328 ~~l~g~d~iv~~~t~i~--~~s~ik~SviG~nC~Ig~~~~v~n-Silm~nV~vg~G~~IensIIg~gA~Ig~gs~L~ 401 (433)
T KOG1462|consen 328 VALVGADSIVGDNTQIG--ENSNIKRSVIGSNCDIGERVKVAN-SILMDNVVVGDGVNIENSIIGMGAQIGSGSKLK 401 (433)
T ss_pred eeccchhhccCCCceec--ccceeeeeeecCCccccCCcEEEe-eEeecCcEecCCcceecceecccceecCCCeee
Confidence 37788899999999999 999999999999999999999999 999999999999999999999999999988765
No 100
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.30 E-value=2e-11 Score=106.02 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=19.7
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEcc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKS 322 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~ 322 (331)
++|+++|+||++|.|+++|+|+.+|+|+.++.| ++|.|+++++|+.
T Consensus 136 ~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~ 182 (338)
T COG1044 136 VVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGA 182 (338)
T ss_pred cEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEcc
Confidence 444444444444444444444444444444444 2444444444443
No 101
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=1.6e-11 Score=99.39 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=72.2
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEcc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLP 316 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 316 (331)
.+..+++++.|.++++|.+.+.||++|.|+ +++.|. +++|+++|.|++++.|.+ |+|+++++|++++.+.+++|++
T Consensus 16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~--~~~~i~~~~~Ig~~~~I~~~~~i~~-siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIG--PNAYIRGYTVLGDGCVVGNSVEVKN-SIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred CCeEEcCCCEECCCCEEeCCeEECCCCEEC--CCCEEcCCCEECCCCEECCCcEEee-eEecCCCEeccCCEEecCEECC
Confidence 445677888888888887788888888888 778886 699999999999999987 9999999999999998888888
Q ss_pred CeEEccCcc
Q 020113 317 HKEIKSSIV 325 (331)
Q Consensus 317 ~~~i~~~~~ 325 (331)
++.|+++..
T Consensus 93 ~~~I~~~~~ 101 (163)
T cd05636 93 NVNLGAGTI 101 (163)
T ss_pred CCEECCCcE
Confidence 888887764
No 102
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.29 E-value=4.6e-12 Score=110.08 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=110.2
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHH--------cCCCEEEEEeccChHHHHHHHHHhhhc
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKA--------VGVTEVVLAINYQPEVMLNFLKEFEKK 70 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~--------~gi~~i~iv~~~~~~~i~~~~~~~~~~ 70 (331)
-+++||||.|+||+. ..||+|+|++ |+|++++.++++.+ .++..+++.+.+..+.+.+++++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 478999999999964 7899999999 99999999999986 346777777777778899999985412
Q ss_pred cCeEEEEeeCCcccCChHHHHHHHhhccCCCC-CcEEEEeCCeeccccHHHHHHHHhhcCCceEEE---------ecCCC
Q 020113 71 LEIKITCSQETEPLGTAGPLALARDKLIDDSG-EPFFVLNSDVISEYPLKQMIEFHRGRGGEASIM---------VDEPS 140 (331)
Q Consensus 71 ~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~-~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~---------~~~~~ 140 (331)
.+..+.+.....|..+.++... +++... +......||++.......+++.|.+++.....+ +.+|.
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~ 154 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL 154 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH
Confidence 2333445554556555554442 221110 156677888888777788999999988875444 44677
Q ss_pred CceEEEEcCCcCceeEeeecCCC
Q 020113 141 KYGVVVMEETTGKVEKFVEKPKN 163 (331)
Q Consensus 141 ~~~~v~~d~~~~~v~~~~ek~~~ 163 (331)
-+|++..++. .....+.+|+..
T Consensus 155 ~lG~~~~~~~-~~~~kvv~K~~~ 176 (266)
T cd04180 155 FIGIAIQNRK-AINQKVVPKTRN 176 (266)
T ss_pred HHHHHHHcCC-CEEEEEEECCCC
Confidence 7777776665 677788888653
No 103
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.27 E-value=2.1e-11 Score=90.72 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=55.5
Q ss_pred eEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 247 NIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+|++++.|. ++.||++|.|+ ++.|++|+++++|.|++++.|.+ |+|+++++||+++.++++++++++.|+++...
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~---~~~I~~svi~~~~~Ig~~~~I~~-siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v 77 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS---GGTVENSVLFRGVRVGSGSVVED-SVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVI 77 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc---CeEEEeCEEeCCCEECCCCEEEE-eEEcCCCEECCCCEEEeEEECCCCEECCCCEE
Confidence 445555553 56666777765 26677788888888888888887 88888888888888888888877777776544
Q ss_pred C
Q 020113 327 P 327 (331)
Q Consensus 327 ~ 327 (331)
+
T Consensus 78 ~ 78 (104)
T cd04651 78 G 78 (104)
T ss_pred C
Confidence 3
No 104
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.26 E-value=3.2e-11 Score=100.52 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=54.7
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEcc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLP 316 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~ 316 (331)
++.++++++.|++.++|+++++||++|.|+ +++.|.++.|+++|.|++++.|.+ ++|+++++|++++.|. ++.+++
T Consensus 14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~--~~~~I~~~~Ig~~~~I~~~~~i~~-~~ig~~~~Ig~~~~I~~~~~Ig~ 90 (193)
T cd03353 14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIG--PNCVIKDSTIGDGVVIKASSVIEG-AVIGNGATVGPFAHLRPGTVLGE 90 (193)
T ss_pred CCeEECCCcEECCCCEEeCcCEECCCCEEC--CCcEEeCCEECCCCEEcCCeEEEe-eEECCCCEECCccEEcCccEECC
Confidence 345667777777777777777777777777 667776667777777777666665 6666666666666664 455555
Q ss_pred CeEEccC
Q 020113 317 HKEIKSS 323 (331)
Q Consensus 317 ~~~i~~~ 323 (331)
++.|+++
T Consensus 91 ~~~Ig~~ 97 (193)
T cd03353 91 GVHIGNF 97 (193)
T ss_pred CCEECCc
Confidence 5554443
No 105
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=4.9e-11 Score=96.57 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=61.1
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
.+..+++++.|++++.|++++.|+++|.|+ +++.|.+|+|++++.|++++.+.+ ++|+++++|++++.+.
T Consensus 34 ~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~siig~~~~I~~~~~i~~-siIg~~~~I~~~~~i~ 103 (163)
T cd05636 34 GPVIIGKGCEIGPNAYIRGYTVLGDGCVVG--NSVEVKNSIIMDGTKVPHLNYVGD-SVLGENVNLGAGTITA 103 (163)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEC--CCcEEeeeEecCCCEeccCCEEec-CEECCCCEECCCcEEc
Confidence 345677888888888888888888899998 889999999999999999999988 9999999999999873
No 106
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.24 E-value=2.6e-11 Score=96.08 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCccCCCceEecceEEcC----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEE
Q 020113 239 SSKLATGSNIIGNVLVHE----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVV 314 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v 314 (331)
+.+|++++.|.++++|+. .+.||++|+|| ++|.|++|+|+++|.||++++|-+++.||++|.||.|+.++....
T Consensus 50 ~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIG--H~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~ 127 (176)
T COG0663 50 PIRIGARTNIQDGVVIHADPGYPVTIGDDVTIG--HGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKE 127 (176)
T ss_pred ceEECCCceecCCeEEecCCCCCeEECCCcEEc--CccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcC
Confidence 456788888888888886 67888888888 888888888999999999988888888888888888888877666
Q ss_pred ccCeEEccC
Q 020113 315 LPHKEIKSS 323 (331)
Q Consensus 315 ~~~~~i~~~ 323 (331)
-|...+--+
T Consensus 128 ~p~~~L~~G 136 (176)
T COG0663 128 IPGGSLVVG 136 (176)
T ss_pred CCCCeEeec
Confidence 655444433
No 107
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.21 E-value=3.2e-10 Score=94.95 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=60.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPH 317 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~ 317 (331)
..+++++.|+++++|++++.||++|.|+ .++.|. ++.|+++|.|+.++.+..++.|+++|.||+++.+. ++.|+++
T Consensus 100 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~ 177 (201)
T TIGR03570 100 ASIGEGTVIMAGAVINPDVRIGDNVIIN--TGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177 (201)
T ss_pred CEECCCCEECCCCEECCCCEECCCcEEC--CCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCC
Confidence 3456666666666666677777777776 667774 57888888888888888778888888888888874 5666666
Q ss_pred eEEccCc
Q 020113 318 KEIKSSI 324 (331)
Q Consensus 318 ~~i~~~~ 324 (331)
++|+++.
T Consensus 178 ~~i~~~~ 184 (201)
T TIGR03570 178 AIVGAGA 184 (201)
T ss_pred CEECCCC
Confidence 6666544
No 108
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.20 E-value=3.6e-10 Score=94.10 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=61.1
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPH 317 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~ 317 (331)
..+++++.|+++++|++++.||++|.|+ .++.|. ++.||++|.|+.++.+.++++|+++|.||.++.+. ++.|+++
T Consensus 97 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~ 174 (197)
T cd03360 97 AVIGEGCVIMAGAVINPDARIGDNVIIN--TGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAG 174 (197)
T ss_pred CEECCCCEEcCCCEECCCCEECCCeEEC--CCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCC
Confidence 3466777777777777777777777777 667774 67788888888888887778888888888888774 4666666
Q ss_pred eEEccCc
Q 020113 318 KEIKSSI 324 (331)
Q Consensus 318 ~~i~~~~ 324 (331)
++++++.
T Consensus 175 ~~v~~~~ 181 (197)
T cd03360 175 AIIGAGA 181 (197)
T ss_pred CEECCCC
Confidence 6666544
No 109
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.19 E-value=1e-10 Score=101.66 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=35.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVAD 305 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~ 305 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. +++||++|.|+++++|.+ +++||++|+|++
T Consensus 11 ~a~ig~~~~I~p~~~I~~~v~IG~~~~I~--~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~ 88 (254)
T cd03351 11 GAKIGENVEIGPFCVIGPNVEIGDGTVIG--SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIRE 88 (254)
T ss_pred CCEECCCCEECCCcEECCCCEECCCCEEC--CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECC
Confidence 34455555555555555555555555555 445553 355555555555555542 244555555555
Q ss_pred ccEE
Q 020113 306 EVYS 309 (331)
Q Consensus 306 ~~~i 309 (331)
+++|
T Consensus 89 ~~~I 92 (254)
T cd03351 89 FVTI 92 (254)
T ss_pred ccEE
Confidence 4444
No 110
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=4.7e-10 Score=90.97 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=131.8
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|+|+|.|.++|..- |.+.+++|+|||.|+++++..++ +++|+|.+. .+.+.+.-++ +|.++.+..+.
T Consensus 6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A~~----ygak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEAKK----YGAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHHHH----hCccccccCCh
Confidence 89999998888844 99999999999999999999998 788887654 4455555444 45555333222
Q ss_pred c----ccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEEecCCCCceEEEE-cCCcCce
Q 020113 82 E----PLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVM-EETTGKV 154 (331)
Q Consensus 82 ~----~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~-d~~~~~v 154 (331)
+ ...+.++++++++......+ .++++.+-. +...+++++++.+.+...+..+.+.+.+..-+-.+ +.+ +.+
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~~~-~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~-~~~ 151 (228)
T COG1083 74 ELASDRASTIDAALHALESFNIDED-TLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNN-GEV 151 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccccC-eeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHhcC-Cce
Confidence 1 12233567777777765543 577777777 56678999999999888766555222211111111 222 566
Q ss_pred eEeeecCC--C-----CCCCeEEEEEEEEChhhHhhcccCCCCcccchHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHH
Q 020113 155 EKFVEKPK--N-----FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAAENKLFAMVLPG-FWMDIGQPKDYITG 226 (331)
Q Consensus 155 ~~~~ek~~--~-----~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~d~~~a 226 (331)
..+.|.|. . +.....+..+|+++.+.|..-+ ..| .++...|.++. ...||++..|+-.+
T Consensus 152 ~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~ia 218 (228)
T COG1083 152 KPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEIA 218 (228)
T ss_pred eecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHHH
Confidence 66666542 1 2234567889999998776521 111 12344565544 37799999999998
Q ss_pred HHHHHh
Q 020113 227 LRLYLD 232 (331)
Q Consensus 227 ~~~~l~ 232 (331)
+..+..
T Consensus 219 e~l~~~ 224 (228)
T COG1083 219 ENLIFL 224 (228)
T ss_pred HHHhhh
Confidence 877653
No 111
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.19 E-value=1.3e-10 Score=95.87 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred CCCcEECCCCCceE-----eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 261 GDGCLIGPDKHACI-----SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 261 ~~~~~I~~~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
|++|.|+ ++|+| .+|+|+++|.||+++.|.+ |+|+++|.||.++.+. ++.|++++.|+++
T Consensus 51 g~~t~Ig--~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g~~IG~~s~Vgag 116 (192)
T TIGR02287 51 KEGANIQ--DNCVMHGFPGQDTVVEENGHVGHGAILHG-CIVGRNALVGMNAVVMDGAVIGENSIVAAS 116 (192)
T ss_pred CCCCEEC--CCeEEeccCCCCCeECCCCEECCCCEEcC-CEECCCCEECCCcccCCCeEECCCCEEcCC
Confidence 3444444 55665 3466777777777776666 7777777776666653 3555555555444
No 112
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.18 E-value=1.3e-10 Score=101.22 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=59.3
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~ 304 (331)
+.+.+++++.|++.++|++++.||++|.|+ ++++|. +++||++|.|++++.|++ .++||++|+|+
T Consensus 13 ~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~--~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~ 90 (262)
T PRK05289 13 PGAKIGENVEIGPFCVIGPNVVIGDGTVIG--SHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIR 90 (262)
T ss_pred CCCEECCCCEECCCeEECCCCEECCCCEEC--CCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEEC
Confidence 445566666666777777777777777777 667775 577888888888888864 47788888888
Q ss_pred cccEEcC--------cEEccCeEEccCcc
Q 020113 305 DEVYSNG--------AVVLPHKEIKSSIV 325 (331)
Q Consensus 305 ~~~~i~~--------~~v~~~~~i~~~~~ 325 (331)
++++|.. +.|++++.|+++++
T Consensus 91 e~~~I~~~~~~~~~~t~IG~~~~I~~~~~ 119 (262)
T PRK05289 91 EFVTINRGTVQGGGVTRIGDNNLLMAYVH 119 (262)
T ss_pred CCeEEecccccCCCeeEECCceEECCCCE
Confidence 7777753 34666555554443
No 113
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.18 E-value=1.6e-10 Score=92.73 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=58.2
Q ss_pred CccCCCceEecceEEcC---CcEECCCcEECCCCCceE-----eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 240 SKLATGSNIIGNVLVHE---GAKIGDGCLIGPDKHACI-----SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~---~~~i~~~~~I~~~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
..+++++.|+++++|.. .+.||++|.|+ ++|.| .+|+|+++|.|++++.+.+ ++||++|.||.++.|.
T Consensus 19 v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig--~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~ 95 (155)
T cd04745 19 VIIGKNCYIGPHASLRGDFGRIVIRDGANVQ--DNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIGRNALVGMNAVVMD 95 (155)
T ss_pred EEECCCCEECCCcEEeCCCCcEEECCCCEEC--CCCEEeecCCCCeEEcCCCEECCCcEEEC-CEECCCCEECCCCEEeC
Confidence 34555666665555543 35667777777 77887 4588888888888888877 8888888888888774
Q ss_pred CcEEccCeEEccCc
Q 020113 311 GAVVLPHKEIKSSI 324 (331)
Q Consensus 311 ~~~v~~~~~i~~~~ 324 (331)
++.|+++++|+.+.
T Consensus 96 g~~Ig~~~~Ig~~s 109 (155)
T cd04745 96 GAVIGEESIVGAMA 109 (155)
T ss_pred CCEECCCCEECCCC
Confidence 46777777666554
No 114
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.18 E-value=1.8e-10 Score=88.18 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=54.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEcc---------------ceEECCCcEECc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVEN---------------MTILGEDVHVAD 305 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~---------------~~~i~~~~~i~~ 305 (331)
+++++.|.++++|++++.||++|.|+ .++.| .+++|+++|.|++++.+.+ +++|+++|.||+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~ 78 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQ--SNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGA 78 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEEC--CCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECc
Confidence 35666777777777777777777777 66777 3677777777777776532 277778888887
Q ss_pred ccEEc-CcEEccCeEEccC
Q 020113 306 EVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 306 ~~~i~-~~~v~~~~~i~~~ 323 (331)
++.+. ++.+++++.|+++
T Consensus 79 ~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 79 NATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCEEeCCcEECCCCEEccC
Confidence 77773 4666666666543
No 115
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.18 E-value=9.8e-11 Score=104.76 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=38.4
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
++++++.|+++++|++++.||++|.|+ .++.| .+++||++|.|+++++|.++|+||++|.|+++++|
T Consensus 105 ~Ig~~v~I~~~~~I~~~v~IG~~~~I~--~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 105 KIGDGVTIGPNVVIGAGVEIGENVIIG--PGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred EECCCCEECCCcEEccCcEECCcEEEC--CCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 344444455555555555555555555 45555 35666666666666666644666666666666666
No 116
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.17 E-value=1.5e-10 Score=92.91 Aligned_cols=78 Identities=26% Similarity=0.439 Sum_probs=49.8
Q ss_pred ccCCCceEecceEEc----CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEc
Q 020113 241 KLATGSNIIGNVLVH----EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~----~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
.|++++.|+++++|+ .++.|+++|.|+ +++.+.+++||++|.||.++.|.++++|++++.|++++.+. +..|.
T Consensus 41 ~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig--~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~ 118 (155)
T cd04745 41 VIRDGANVQDNCVIHGFPGQDTVLEENGHIG--HGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIP 118 (155)
T ss_pred EECCCCEECCCCEEeecCCCCeEEcCCCEEC--CCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeC
Confidence 455555555555552 346666666666 66666777777777777777776667777777777777664 44555
Q ss_pred cCeEE
Q 020113 316 PHKEI 320 (331)
Q Consensus 316 ~~~~i 320 (331)
+++.+
T Consensus 119 ~~~~v 123 (155)
T cd04745 119 PRSLI 123 (155)
T ss_pred CCCEE
Confidence 55554
No 117
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.17 E-value=5.3e-10 Score=101.36 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=58.4
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc---------
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN--------- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~--------- 310 (331)
.+++++.|+++++|++++.||++|+|+ .++.|. ++.||++|.|+++++|.+++.||++|+|+++++|.
T Consensus 114 ~ig~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~ 191 (343)
T PRK00892 114 KIGEGVSIGPNAVIGAGVVIGDGVVIG--AGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFAND 191 (343)
T ss_pred EECCCCEECCCeEEeccceeCCCcEEC--CCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccC
Confidence 455556666666666666666666666 567774 57777777777777777767788888888888873
Q ss_pred -----------CcEEccCeEEccCcc
Q 020113 311 -----------GAVVLPHKEIKSSIV 325 (331)
Q Consensus 311 -----------~~~v~~~~~i~~~~~ 325 (331)
+++|++++.|+++..
T Consensus 192 ~~~~~~~~~~g~v~Ig~~v~IGa~~~ 217 (343)
T PRK00892 192 RGGWVKIPQLGRVIIGDDVEIGANTT 217 (343)
T ss_pred CCceeeccccccEEECCCcEECCCcE
Confidence 467777777777653
No 118
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.16 E-value=1.5e-10 Score=82.11 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=36.2
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
||++|.|+ +++.|.+++|+++|.|++++.|.+ ++|+++++|++++.|.++++++++.|+++...
T Consensus 2 ig~~~~I~--~~~~i~~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v 65 (81)
T cd04652 2 VGENTQVG--EKTSIKRSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL 65 (81)
T ss_pred ccCCCEEC--CCCEEeCcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEE
Confidence 34444444 444455555666666666666655 66666666666666666666655555555443
No 119
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.15 E-value=3.3e-10 Score=83.62 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=67.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 317 (331)
+..+++++.|.+++.+...+.||++|.|+ +++.|. +++||++|.||. .|.+ |+|+++++|++++.|.+++|+++
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig--~~~~I~~~v~IG~~~~Ig~--~i~~-svi~~~~~i~~~~~lg~siIg~~ 85 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVK--MGARIYGNTTIGPTCKIGG--EVED-SIIEGYSNKQHDGFLGHSYLGSW 85 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEEC--CCCEEeCcCEECCCCEECC--EECc-cEEcCCCEecCcCEEeeeEECCC
Confidence 44577778888888887788888888888 778776 588888888875 5666 99999999999999999999999
Q ss_pred eEEccCcc
Q 020113 318 KEIKSSIV 325 (331)
Q Consensus 318 ~~i~~~~~ 325 (331)
+.|+++.-
T Consensus 86 v~ig~~~~ 93 (101)
T cd05635 86 CNLGAGTN 93 (101)
T ss_pred CEECCCce
Confidence 99998753
No 120
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.15 E-value=1.8e-10 Score=98.23 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=36.0
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc--------cceEECCCcEECcccEE-cCcEEccCeEEccCccC
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE--------NMTILGEDVHVADEVYS-NGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~--------~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~~~ 326 (331)
++.||++|.|+ .+++|. ++.||++|.|+.++.|. ..++|+++|.||.++.| .++.|+++++|+.++..
T Consensus 129 ga~IGeGt~I~--~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 129 GAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred CcEECCCCEEC--CCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 34455555555 445553 45555555555555543 12566666666666666 35555555555554433
No 121
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.15 E-value=2.7e-10 Score=91.13 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=58.7
Q ss_pred CccCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-----CEEcCCCEECCCcEEccceEECCCcEECcccEE-c
Q 020113 240 SKLATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-----SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-N 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~ 310 (331)
..+++++.|++++.|... +.||++|.|+ ++|.|.. ++|++++.|+.++.+.+ ++|+++|.|+.++.+ .
T Consensus 19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig--~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~ 95 (154)
T cd04650 19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQ--ENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKVGNYVIVGMGAILLN 95 (154)
T ss_pred EEECCCCEEcCCeEEEcCCCcEEECCCCEEC--CCCEEEeCCCCCeEECCCCEECCCcEEEC-cEECCCCEEcCCCEEeC
Confidence 345666666666655543 4677777777 6677753 77888888888888877 888888888888887 4
Q ss_pred CcEEccCeEEccCc
Q 020113 311 GAVVLPHKEIKSSI 324 (331)
Q Consensus 311 ~~~v~~~~~i~~~~ 324 (331)
++.|+++++++++.
T Consensus 96 ~~~Ig~~~~vg~~~ 109 (154)
T cd04650 96 GAKIGDHVIIGAGA 109 (154)
T ss_pred CCEECCCCEECCCC
Confidence 67777777777554
No 122
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.13 E-value=6.4e-10 Score=99.54 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=50.7
Q ss_pred eEEecCCHHHHHHHHHHHHhhhccccCCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEE
Q 020113 213 FWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARV 291 (331)
Q Consensus 213 ~~~~i~t~~d~~~a~~~~l~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i 291 (331)
.+.-+++|..-+..-..++.+ .......+++++.|.+.+.|++++.|+++|+|+ .++.| .++.|+++|.|+.++.|
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~-~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~--~~v~IG~~~~I~~~~~Ig~~~~I 142 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDP-PPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIG--AGVEIGENVIIGPGVVIGDDVVI 142 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcc-cccccCCcCCCCEeCCCcEECCCCEECCCcEEc--cCcEECCcEEECCCCEECCccee
Confidence 366677887555433333322 122234466666666666666666665555555 33444 23444444444444444
Q ss_pred ccceEECCCcEECcccEE-cCcEEccCeEEc
Q 020113 292 ENMTILGEDVHVADEVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 292 ~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~ 321 (331)
+++|.|+.+++|+.++.| .++.|+++++|+
T Consensus 143 G~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 143 GDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred CCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 444444444444444444 234444444443
No 123
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.13 E-value=3.6e-10 Score=93.57 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccCc
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
+|+|++++.||+++.+.+ |+|+++|.||.++++ .++.|+++++++++.
T Consensus 71 ~siIg~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags 119 (196)
T PRK13627 71 DTIVGENGHIGHGAILHG-CVIGRDALVGMNSVIMDGAVIGEESIVAAMS 119 (196)
T ss_pred CCEECCCCEECCCcEEee-EEECCCCEECcCCccCCCcEECCCCEEcCCC
Confidence 366777777777777776 778888888877776 345555555555444
No 124
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.12 E-value=5.5e-10 Score=87.84 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=47.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS- 309 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i- 309 (331)
..+++++.|.++++++.++.||++|.|+ .++.|. +++|+++|.|++++.+.+ .++|++++.|+.++.|
T Consensus 14 ~~Ig~~~~I~~~~~i~~~~~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~ 91 (139)
T cd03350 14 AFIGPGAVLMMPSYVNIGAYVDEGTMVD--SWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVV 91 (139)
T ss_pred CEECCCCEECCCCEEccCCEECCCeEEc--CCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEEC
Confidence 3444555555555555555666666666 556653 566666666666666652 2556666666666666
Q ss_pred cCcEEccCeEEccCcc
Q 020113 310 NGAVVLPHKEIKSSIV 325 (331)
Q Consensus 310 ~~~~v~~~~~i~~~~~ 325 (331)
.++.|+++++|+++..
T Consensus 92 ~gv~Ig~~~~Ig~g~~ 107 (139)
T cd03350 92 EGVIVGKGAVLAAGVV 107 (139)
T ss_pred CCCEECCCCEEcCCCE
Confidence 3555555555554443
No 125
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.12 E-value=3e-10 Score=102.94 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=58.9
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc-------------------ceEEC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN-------------------MTILG 298 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~-------------------~~~i~ 298 (331)
...|++++.|+++++|+.++.||++|.|+ ++++|. ++.|+++|.|+++++|+. +++||
T Consensus 130 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~--~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig 207 (343)
T PRK00892 130 GVVIGDGVVIGAGAVIGDGVKIGADCRLH--ANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIG 207 (343)
T ss_pred cceeCCCcEECCCCEEcCCcEECCCCEeC--CCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEEC
Confidence 34566666666666666777777777777 667775 466888888888888852 38888
Q ss_pred CCcEECcccEEc-----CcEEccCeEEccCc
Q 020113 299 EDVHVADEVYSN-----GAVVLPHKEIKSSI 324 (331)
Q Consensus 299 ~~~~i~~~~~i~-----~~~v~~~~~i~~~~ 324 (331)
++|.||++++|. +++|++++.|+..+
T Consensus 208 ~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v 238 (343)
T PRK00892 208 DDVEIGANTTIDRGALDDTVIGEGVKIDNLV 238 (343)
T ss_pred CCcEECCCcEEecCccccceeCCCCEEeCCe
Confidence 889999988884 35555555555443
No 126
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.12 E-value=4.1e-10 Score=92.95 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=57.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----cceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----NMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----~~~~i~~~~~i~~~~~i~~~ 312 (331)
++++++.|.+.+.|..++.||++|.|+ .+|+|.. .+||++|.||++|.|. .+|+|+++++|++++.|.+|
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~--~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~s 87 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVG--PLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGC 87 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEEC--CCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCC
Confidence 456666666666666666667777776 5566652 5777778888777773 23788888888888887777
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 88 iIg~~~~IG~ga 99 (192)
T TIGR02287 88 IVGRNALVGMNA 99 (192)
T ss_pred EECCCCEECCCc
Confidence 777777776554
No 127
>PLN02296 carbonate dehydratase
Probab=99.12 E-value=3.3e-10 Score=98.12 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=36.6
Q ss_pred EECCCcEECCCCCceEe-----------CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 259 KIGDGCLIGPDKHACIS-----------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~-----------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
.||++|.|+ ++|+|. +|+||++|.||++|.|.+ |+|+++|.||.+++| .++.|+++++|+++
T Consensus 93 ~IG~~~~I~--d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~gv~Ig~~a~Igag 166 (269)
T PLN02296 93 SVGSGTNIQ--DNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDGVVVEKHAMVAAG 166 (269)
T ss_pred EECCCCEEC--CCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC-CEECCCcEECCCcEECCCeEECCCCEECCC
Confidence 444555555 555553 466777777777776655 666666666666666 34445555554443
No 128
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.11 E-value=2.2e-10 Score=99.66 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=35.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+.+++++.|+++++|++++.||++|+|+ .+|+| .++.||++|.|++++.|..++.||++|.|++|++|
T Consensus 112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~--~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 112 ATIGKNVSIGPNVVIGAGVVIGENVVIG--AGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred CccCCCCccCCCeEECCCCEECCCcEEC--CCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 3444555555555555555555555555 44444 24555555555555555555555555555555544
No 129
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.10 E-value=4.9e-10 Score=89.68 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=55.2
Q ss_pred cCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-----CEEcCCCEECCCcEEccceEECCCcEECcccEEc-Cc
Q 020113 242 LATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-----SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GA 312 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~ 312 (331)
+++++.|++++.|..+ ++||++|.|+ ++++|.. ++|+++|.|+.+|.+.+ ++|++++.|+.++.+. ++
T Consensus 20 ig~~~~I~~~~~I~~~~~~~~IG~~~~I~--~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~ 96 (153)
T cd04645 20 LGEGSSVWFGAVLRGDVNPIRIGERTNIQ--DGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGA 96 (153)
T ss_pred ECCCcEEcCCeEEECCCCceEECCCCEEC--CCcEEecCCCCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCCC
Confidence 4455555555544432 3666666666 7777765 48888888888888887 8888888888888874 66
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 97 ~ig~~~~ig~~~ 108 (153)
T cd04645 97 VIGKGSIVAAGS 108 (153)
T ss_pred EECCCCEECCCC
Confidence 666666666544
No 130
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=3.4e-10 Score=79.91 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=49.3
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
||++|.|+ +++.|.+++|+++|.||+++.|.+ ++|+++++|++++.+.++++++++.|+++...
T Consensus 2 ig~~~~I~--~~~~i~~s~ig~~~~Ig~~~~i~~-svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i 65 (79)
T cd03356 2 IGESTVIG--ENAIIKNSVIGDNVRIGDGVTITN-SILMDNVTIGANSVIVDSIIGDNAVIGENVRV 65 (79)
T ss_pred ccCCcEEC--CCCEEeCCEECCCCEECCCCEEeC-CEEeCCCEECCCCEEECCEECCCCEECCCCEE
Confidence 45666666 566666678888888888888887 88888888888888888888888888776543
No 131
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.10 E-value=3.4e-10 Score=79.87 Aligned_cols=65 Identities=26% Similarity=0.433 Sum_probs=54.0
Q ss_pred ECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCccCC
Q 020113 260 IGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~ 327 (331)
||++|.|+ +++.|.+++|+++|.|++++.|.+ ++|+++++|++++.|.++++++++.|+++...+
T Consensus 2 ig~~~~I~--~~~~i~~s~ig~~~~ig~~~~i~~-s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 2 IGRGTSIG--EGTTIKNSVIGRNCKIGKNVVIDN-SYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred ccCCCEEC--CCCEEeccEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 56667777 667777788999999999999987 999999999999999888888888888776554
No 132
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.09 E-value=6.4e-10 Score=89.85 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=41.0
Q ss_pred CccCCCceEecceEEc---CCcEECCCcEECCCCCceEeC-----------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 240 SKLATGSNIIGNVLVH---EGAKIGDGCLIGPDKHACISS-----------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~-----------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
..+++++.|+++++|. ..++||++|.|+ +++.|.+ +.||+++.++.++.+.+ ++||++|.||.
T Consensus 18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~--~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~ 94 (164)
T cd04646 18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIE--EQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFES 94 (164)
T ss_pred eEECCCCEEcCCeEEecCCCCeEECCCCEEC--CCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECCCCEEeC
Confidence 3455555555555553 235566666666 5565543 23555555555555555 55555555555
Q ss_pred ccEE-cCcEEccCeEEc
Q 020113 306 EVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 306 ~~~i-~~~~v~~~~~i~ 321 (331)
++.| .++.|+++++|+
T Consensus 95 ~a~I~~gv~Ig~~~~Ig 111 (164)
T cd04646 95 KSFVGKNVIITDGCIIG 111 (164)
T ss_pred CCEECCCCEECCCCEEe
Confidence 5555 233444444433
No 133
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.09 E-value=5.8e-10 Score=89.18 Aligned_cols=81 Identities=19% Similarity=0.131 Sum_probs=47.7
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEccc----eEECCCcEECcccEEcCcE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVENM----TILGEDVHVADEVYSNGAV 313 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~~~~ 313 (331)
++++++|.+.++|.+++.||++|.|+ +++.|.. .+||++|.|+++|.|... ++|++++.|++++.+.+++
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~--~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~ 80 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVW--HYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAK 80 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEc--CCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcE
Confidence 44555555555555555555555555 4555543 266666666666666542 5666666666666666666
Q ss_pred EccCeEEccCc
Q 020113 314 VLPHKEIKSSI 324 (331)
Q Consensus 314 v~~~~~i~~~~ 324 (331)
|++++.|+.+.
T Consensus 81 Ig~~~~Ig~~~ 91 (154)
T cd04650 81 VGNYVIVGMGA 91 (154)
T ss_pred ECCCCEEcCCC
Confidence 66655555543
No 134
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.09 E-value=5.6e-10 Score=96.97 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=23.2
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVE 292 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~ 292 (331)
++|++++.|+++++|++++.||++|.|+ +++.|. +++||++|.|++++.|+
T Consensus 11 a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~--~~~~I~~~v~IG~~~~I~~~a~I~ 62 (254)
T TIGR01852 11 AEIGENVEIGPFCIVGPGVKIGDGVELK--SHVVILGHTTIGEGTRIFPGAVIG 62 (254)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEC--CCCEEeeeEEECCCCEECCCcEeC
Confidence 3344444444444444444444444444 334443 34444444444444443
No 135
>PLN02472 uncharacterized protein
Probab=99.09 E-value=6.5e-10 Score=94.99 Aligned_cols=46 Identities=13% Similarity=0.315 Sum_probs=23.1
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.||++|.|.+ |+|+++|.||.+++| .+++|++++.|+++
T Consensus 127 tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~g 173 (246)
T PLN02472 127 TLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEGSLVETHSILEAG 173 (246)
T ss_pred cEECCCCEECCCcEECC-eEEcCCCEECCCCEECCCCEECCCCEECCC
Confidence 55555555555555544 555555555555544 23444444444433
No 136
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.08 E-value=4.4e-10 Score=95.93 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=60.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceE---------eCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI---------SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i---------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.|++++.|.++++|+.++.||++|.|+ .++.| ++++|+++|.||.+|.|.++++|++++.||.+++|.
T Consensus 130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~--~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~ 207 (269)
T TIGR00965 130 AYVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIG 207 (269)
T ss_pred cEECCCCEECCCcEECCCCEECCCCEEc--CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEEC
Confidence 4578888888888888888888888888 66766 357899999999999888888888888888888883
Q ss_pred -CcEEccC
Q 020113 311 -GAVVLPH 317 (331)
Q Consensus 311 -~~~v~~~ 317 (331)
++.|++.
T Consensus 208 ~~~~I~~~ 215 (269)
T TIGR00965 208 QSTKIYDR 215 (269)
T ss_pred CCCEEecc
Confidence 4555543
No 137
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.08 E-value=8.3e-10 Score=91.88 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=54.5
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~~~ 318 (331)
.+...+.++.+++|++++.|++++.|| +++.|. +++|+++|.||.+|.|..++++.++++||+++.| .++.+.+++
T Consensus 92 ~i~~~~~ig~~~~i~~~~~i~~~~~ig--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~ 169 (197)
T cd03360 92 VVSPSAVIGEGCVIMAGAVINPDARIG--DNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGV 169 (197)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEEC--CCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCC
Confidence 345555555566666666666666666 666663 6666666666777776666667777777777777 366777777
Q ss_pred EEccCccCC
Q 020113 319 EIKSSIVNP 327 (331)
Q Consensus 319 ~i~~~~~~~ 327 (331)
+|+++....
T Consensus 170 ~ig~~~~v~ 178 (197)
T cd03360 170 TIGAGAIIG 178 (197)
T ss_pred EECCCCEEC
Confidence 776665443
No 138
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.08 E-value=5.6e-10 Score=96.98 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=7.2
Q ss_pred CEEcCCCEECCCcEEc
Q 020113 277 SIIGWHSTVGRWARVE 292 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~ 292 (331)
++||++|.|+++|+|.
T Consensus 78 v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 78 LEIGDNNTIREFVTIH 93 (254)
T ss_pred EEECCCCEECCccEEe
Confidence 3444444444444443
No 139
>PRK10191 putative acyl transferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=85.40 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEeC--------CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACISS--------SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~~--------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
...+.+++++.|++ ++.|++++.||++|.|+ ++++|.+ ++||++|.||.++.+.+++.||+++.|+++
T Consensus 45 ~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~--h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igag 122 (146)
T PRK10191 45 QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIR--HGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAG 122 (146)
T ss_pred CCCCEECCCeEECCCCeEEECCCcEECCCCEEC--CCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCC
Confidence 34456777777776 57777777777777777 6676642 579999999999999988999999999999
Q ss_pred cEEcCcEEccCeEEccC
Q 020113 307 VYSNGAVVLPHKEIKSS 323 (331)
Q Consensus 307 ~~i~~~~v~~~~~i~~~ 323 (331)
+.+.+.+..+..+++..
T Consensus 123 s~V~~dv~~~~~v~G~p 139 (146)
T PRK10191 123 SVVLDSVPDNALVVGEK 139 (146)
T ss_pred CEECCccCCCcEEEccC
Confidence 99987766666665543
No 140
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.07 E-value=8e-10 Score=89.72 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=31.9
Q ss_pred cEECCCcEECCCCCceEeC-CEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 258 AKIGDGCLIGPDKHACISS-SIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+.||++|.|+ .++.|.+ ++||++|.||.+|.|.+ +.||++|.||.++.|.++.|++++.+++
T Consensus 65 v~Ig~~~~I~--~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 65 VWIGKNVSIA--HGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred EEECCCceEC--CCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 3344444444 4444442 55555555555555554 5555555555555555555555555543
No 141
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=86.73 Aligned_cols=88 Identities=22% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCC-------------CCceEe-----CCEEcCCCEECCCcEEccceEECCC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPD-------------KHACIS-----SSIIGWHSTVGRWARVENMTILGED 300 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~-------------~~~~i~-----~s~i~~~~~ig~~~~i~~~~~i~~~ 300 (331)
.+.+++++.|-+++.|++++.|..+++|... ++++|+ .++||++|.||+++.|.+ |.|+++
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG-c~Ig~~ 95 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG-CTIGDN 95 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE-eEECCC
Confidence 3456666666666666666654444444222 788885 388999999999999999 999999
Q ss_pred cEECcccEEcC-cEEccCeEEccCccCC
Q 020113 301 VHVADEVYSNG-AVVLPHKEIKSSIVNP 327 (331)
Q Consensus 301 ~~i~~~~~i~~-~~v~~~~~i~~~~~~~ 327 (331)
|.||=|++|-+ +.|+.++.|+++...+
T Consensus 96 ~lIGmgA~vldga~IG~~~iVgAgalV~ 123 (176)
T COG0663 96 VLIGMGATVLDGAVIGDGSIVGAGALVT 123 (176)
T ss_pred cEEecCceEeCCcEECCCcEEccCCccc
Confidence 99999999864 9999999988876655
No 142
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=6.9e-10 Score=78.49 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=48.1
Q ss_pred cCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCcc
Q 020113 255 HEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 255 ~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~ 325 (331)
++++.|++++.|++ +++|+++|.||++|.|.+ ++++++++|++++.|.++++++++.++++..
T Consensus 3 ~~~~~I~~~~~i~~-------~~~Ig~~~~Ig~~~~i~~-sii~~~~~i~~~~~i~~sii~~~~~v~~~~~ 65 (80)
T cd05824 3 DPSAKIGKTAKIGP-------NVVIGPNVTIGDGVRLQR-CVILSNSTVRDHSWVKSSIVGWNSTVGRWTR 65 (80)
T ss_pred CCCCEECCCCEECC-------CCEECCCCEECCCcEEee-eEEcCCCEECCCCEEeCCEEeCCCEECCCcE
Confidence 44455555555552 377888888888888888 8899999999999888888888888887643
No 143
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=1.1e-09 Score=88.42 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=49.1
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe----CCEEcCCCEECCCcEEccc----------eEECCCcEECccc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS----SSIIGWHSTVGRWARVENM----------TILGEDVHVADEV 307 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~----~s~i~~~~~ig~~~~i~~~----------~~i~~~~~i~~~~ 307 (331)
|++++.|.+.+.|..++.||++|.|+ +++.|. .++||++|.|+++|+|.+. +.||+++.++.++
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~--~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~ 79 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVH--PRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGC 79 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEc--CCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCc
Confidence 56666666666666666677777776 556663 2577777777777777652 4566666665555
Q ss_pred EEcCcEEccCeEEcc
Q 020113 308 YSNGAVVLPHKEIKS 322 (331)
Q Consensus 308 ~i~~~~v~~~~~i~~ 322 (331)
.+.+++|++++.|+.
T Consensus 80 ~i~~~~IGd~~~Ig~ 94 (164)
T cd04646 80 KCEALKIGNNNVFES 94 (164)
T ss_pred EEEeeEECCCCEEeC
Confidence 555444444444443
No 144
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=2.6e-10 Score=101.55 Aligned_cols=82 Identities=13% Similarity=0.291 Sum_probs=50.1
Q ss_pred cCCCceEec--ceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 242 LATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 242 i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
...|+.+.. .++|+..+.||.+|+|. .++.++ ++.||++|+||++|.|.+ |.|++++.|...+++.++.|+.++
T Consensus 251 m~~GVtl~dP~t~~i~~dv~ig~DvvI~--p~v~l~G~t~ig~~v~iGpg~~i~d-s~I~~~a~I~~~S~ie~s~vg~~~ 327 (460)
T COG1207 251 MLAGVTLIDPATTYIRGDVEIGRDVVIE--PNVILEGNTVIGDNVVIGPGSVIKD-SVIGDNAVIKAYSVIEGSTVGEGA 327 (460)
T ss_pred HHcCcEEeCCCeEEEcCcEEECCceEEe--cCcEEeeeEEECCceEECCCcEEEe-eEEcCCCEEEecceeeccEecCCc
Confidence 345555543 34555666666666666 456665 466777777777777666 666666666666666666666555
Q ss_pred EEccCccC
Q 020113 319 EIKSSIVN 326 (331)
Q Consensus 319 ~i~~~~~~ 326 (331)
.||+.-+.
T Consensus 328 ~VGPfA~L 335 (460)
T COG1207 328 TVGPFARL 335 (460)
T ss_pred ccCCcccc
Confidence 55554443
No 145
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.06 E-value=9e-10 Score=91.78 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=58.3
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
..+++++.|++++.|+ ++.|+++|.|+ +++.+.++++++++.|++++.|+.+++|++++.|++++.+.++++++++.
T Consensus 34 ~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~--~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~ 110 (193)
T cd03353 34 TVIGEDCVIGPNCVIK-DSTIGDGVVIK--ASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSK 110 (193)
T ss_pred CEECCCCEECCCcEEe-CCEECCCCEEc--CCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCE
Confidence 3455555555555555 33677777777 77888889999999999999998778888888888888877666666555
Q ss_pred Ec
Q 020113 320 IK 321 (331)
Q Consensus 320 i~ 321 (331)
++
T Consensus 111 i~ 112 (193)
T cd03353 111 AN 112 (193)
T ss_pred ec
Confidence 44
No 146
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.05 E-value=1.6e-09 Score=85.14 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
++++++.|.++++|+.++.||++|.|+ .++.+. +++|+++|.||+++.|..++.|++++.|++++.|.
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~--~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~ 110 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLS--AGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEEC--CCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence 455555555555555556666666665 455553 25566666666666665556666666666666553
Q ss_pred CcEEcc
Q 020113 311 GAVVLP 316 (331)
Q Consensus 311 ~~~v~~ 316 (331)
+..|++
T Consensus 111 ~~~I~~ 116 (139)
T cd03350 111 STPIYD 116 (139)
T ss_pred CeEecc
Confidence 344433
No 147
>PLN02296 carbonate dehydratase
Probab=99.05 E-value=1.1e-09 Score=94.83 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=63.4
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----------cceEECCCcEECc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----------NMTILGEDVHVAD 305 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----------~~~~i~~~~~i~~ 305 (331)
..+++++.|.+++.|..++.||++|.|+ .+|+|.. ++||++|.|+++|.|. ..|+||++|+||+
T Consensus 53 p~I~~~~~I~p~A~V~G~V~IG~~~~I~--~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~ 130 (269)
T PLN02296 53 PVVDKDAFVAPSASVIGDVQVGRGSSIW--YGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGH 130 (269)
T ss_pred CccCCCCEECCCcEEEcceEECCCCEEC--CCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECC
Confidence 3577777887777777777788888887 6677763 4789999999998885 2388999999999
Q ss_pred ccEEcCcEEccCeEEccCc
Q 020113 306 EVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 306 ~~~i~~~~v~~~~~i~~~~ 324 (331)
+++|.+|+|++++.|+.+.
T Consensus 131 ~avI~g~~Igd~v~IG~ga 149 (269)
T PLN02296 131 SAVLHGCTVEDEAFVGMGA 149 (269)
T ss_pred CceecCCEECCCcEECCCc
Confidence 8888777777777666554
No 148
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.05 E-value=1.2e-09 Score=91.40 Aligned_cols=85 Identities=18% Similarity=0.327 Sum_probs=51.9
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~ 318 (331)
.+++++.|++++.|+++++|++++.|| +++.|. +++|+++|.||.++.|+.++.++++++|++++.|. ++.+.+++
T Consensus 95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~ 172 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAGAVINPDVRIG--DNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGV 172 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCC
Confidence 444555555555555555555555555 556663 56666666666666666666666666666666663 56666666
Q ss_pred EEccCccCC
Q 020113 319 EIKSSIVNP 327 (331)
Q Consensus 319 ~i~~~~~~~ 327 (331)
+|+++....
T Consensus 173 ~i~~~~~i~ 181 (201)
T TIGR03570 173 TIGAGAIVG 181 (201)
T ss_pred EECCCCEEC
Confidence 666665543
No 149
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.04 E-value=9.7e-10 Score=95.72 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=27.2
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
|+++++|.+.+.|++++.||++|.|+ . ++.||++|.|++++.|.++++||++|.|++++.|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~--~-----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIG--P-----NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEEC--C-----CCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 44455555544444444444444444 1 2344444444444444433444444444444444
No 150
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.04 E-value=1.2e-09 Score=90.40 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEcc----ceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVEN----MTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~----~~~i~~~~~i~~~~~i~~~ 312 (331)
.++++++|.++++|..++.||++|.|+ .+|+|.+ .+|+++|.||++|.|.. +|+|+++++||+++.+.++
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~--~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~ 89 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIG--PLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGC 89 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEEC--CCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeE
Confidence 355666666666655566666666666 5566643 35666666666666644 2677888888877777777
Q ss_pred EEccCeEEccCc
Q 020113 313 VVLPHKEIKSSI 324 (331)
Q Consensus 313 ~v~~~~~i~~~~ 324 (331)
+|++++.|+.+.
T Consensus 90 vIG~~v~IG~ga 101 (196)
T PRK13627 90 VIGRDALVGMNS 101 (196)
T ss_pred EECCCCEECcCC
Confidence 777777776553
No 151
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=9.3e-10 Score=100.09 Aligned_cols=69 Identities=33% Similarity=0.579 Sum_probs=59.8
Q ss_pred ceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 246 SNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 246 ~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+.|.++++|++++.|++++.|+++ |+||++|.||.++.|.+ |+|+++|.|++++.+.+|+|+.+++|++
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~-------~~ig~~~~I~~~~~i~~-Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPY-------TVIGEGVTIGNGVEIKN-SIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCC-------cEECCCCEECCCcEEEe-eEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 556667777666666666666644 99999999999999999 9999999999999999999999999997
No 152
>PLN02472 uncharacterized protein
Probab=99.04 E-value=1.4e-09 Score=93.02 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEc----------cceEECCCcEECccc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVE----------NMTILGEDVHVADEV 307 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~----------~~~~i~~~~~i~~~~ 307 (331)
++.+++|.+++.+..++.||++|.|+ .+++|.+ .+||++|.|+++|.|. ..++||++|+||+++
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~--~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVW--NGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEc--CCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 55556666665555556666666665 4555542 4566667776666663 237777777777777
Q ss_pred EEcCcEEccCeEEccCc
Q 020113 308 YSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 308 ~i~~~~v~~~~~i~~~~ 324 (331)
.|.+|+|++++.|+.+.
T Consensus 140 ~L~~~~Igd~v~IG~~s 156 (246)
T PLN02472 140 LLRSCTIEPECIIGQHS 156 (246)
T ss_pred EECCeEEcCCCEECCCC
Confidence 77766666666666543
No 153
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-10 Score=95.34 Aligned_cols=94 Identities=41% Similarity=0.727 Sum_probs=66.7
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCC---------CCceEeCCEEcCCCEECCCcEEcc-------------c
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------KHACISSSIIGWHSTVGRWARVEN-------------M 294 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~---------~~~~i~~s~i~~~~~ig~~~~i~~-------------~ 294 (331)
++++++++++.|+|++-||++++||+++.|-.. ++++|-+|+||.+|.||+.++++. -
T Consensus 292 hPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~ 371 (407)
T KOG1460|consen 292 HPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAAL 371 (407)
T ss_pred cCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCccee
Confidence 444555555555555555555555544333222 777888888888888888888776 2
Q ss_pred eEECCCcEECcccEEcCcEEccCeEEccCccCCcccC
Q 020113 295 TILGEDVHVADEVYSNGAVVLPHKEIKSSIVNPEIVM 331 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~ 331 (331)
+++|++|.+++.+.+.+|++-|+..+.-++.. +|+|
T Consensus 372 Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~-eIil 407 (407)
T KOG1460|consen 372 TILGADVSVEDEVIVLNSIVLPNKELNVSVQD-EIIL 407 (407)
T ss_pred EEecccceecceeEEeeeeEecCCccceeeec-ceeC
Confidence 78889999999999999999999998877766 4443
No 154
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.04 E-value=1.1e-09 Score=76.80 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=42.0
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+++++.|.++++|++++.||++|.|+ +++.|.+ ..|+++|.++.++.+..++.|++++.|++++.|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIG--PGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEEC--CCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 356666777666666667777777776 5566653 456666666666666555666666666665554
No 155
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.03 E-value=2.3e-09 Score=85.81 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCceEecceEEcCCcEECCCcEECCCCCceEeC----CEEcCCCEECCCcEEccc----eEECCCcEECcccEEcCcEEc
Q 020113 244 TGSNIIGNVLVHEGAKIGDGCLIGPDKHACISS----SIIGWHSTVGRWARVENM----TILGEDVHVADEVYSNGAVVL 315 (331)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~----s~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~~~~v~ 315 (331)
++++|.+.++|..++.||++|.|+ ++++|.. ++||++|.|+++|.|.+. ++|++++.|+.++.+.+++|+
T Consensus 4 ~~~~i~~~a~i~g~v~ig~~~~I~--~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 4 PSAFIAPNATVIGDVTLGEGSSVW--FGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred CCeEECCCCEEEEeEEECCCcEEc--CCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 333444443333334444444444 3344432 356666666666665552 366666666666555555555
Q ss_pred cCeEEcc
Q 020113 316 PHKEIKS 322 (331)
Q Consensus 316 ~~~~i~~ 322 (331)
+++.|++
T Consensus 82 ~~~~Ig~ 88 (153)
T cd04645 82 DNCLIGM 88 (153)
T ss_pred CCCEECC
Confidence 5555543
No 156
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.03 E-value=2.2e-09 Score=82.90 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=54.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEcc----c----eEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVEN----M----TILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~----~----~~i~~~~~i~~~~~i 309 (331)
.+++++++.|.++++|..++.||++|.|. . +| .+++|+++|.||++|+|.. + +.||++|.||.++.|
T Consensus 13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn--~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I 88 (147)
T cd04649 13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVE--G--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI 88 (147)
T ss_pred CCEECCCcEECCCCEEccCCEECCCeEEC--C--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE
Confidence 34556666666666666666666666654 1 22 2466777777777776653 3 788888888888888
Q ss_pred cCcEEccCeEEccCc
Q 020113 310 NGAVVLPHKEIKSSI 324 (331)
Q Consensus 310 ~~~~v~~~~~i~~~~ 324 (331)
+..|+++++|+++.
T Consensus 89 -gv~IG~~~vIGaGs 102 (147)
T cd04649 89 -GISLGDNCIVEAGL 102 (147)
T ss_pred -eEEECCCCEECCCC
Confidence 67778888777754
No 157
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=93.61 Aligned_cols=69 Identities=29% Similarity=0.384 Sum_probs=42.0
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc------------ceEECCCcEECc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN------------MTILGEDVHVAD 305 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~------------~~~i~~~~~i~~ 305 (331)
.+.+++++.|+++++|++++.||++|.|+ ++++|. ++.||++|.|++++.|+. .+.||++++|++
T Consensus 11 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~--~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e 88 (255)
T PRK12461 11 SAKLGSGVEIGPFAVIGANVEIGDGTWIG--PHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIRE 88 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEc--cCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECC
Confidence 34555666666666666666666666666 556664 566666666666666653 255666666666
Q ss_pred ccEE
Q 020113 306 EVYS 309 (331)
Q Consensus 306 ~~~i 309 (331)
+++|
T Consensus 89 ~vtI 92 (255)
T PRK12461 89 GVTI 92 (255)
T ss_pred ccEE
Confidence 5555
No 158
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.02 E-value=6.5e-10 Score=105.10 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
+..+++++.|++++.|. +++||++|.|+ ++|.|++++||++|.||++++|.++++|+++|+||+++.+.++++++++
T Consensus 287 ~~~ig~~~~I~~~~~i~-~~~i~~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~ 363 (456)
T PRK14356 287 ASRIARGAVIHSHCWLR-DAVVSSGATIH--SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGA 363 (456)
T ss_pred ceEECCCCEECCCeEEE-eeEECCCCEEe--eeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCc
Confidence 45678888888888885 78899999999 8899999999999999999999977999999999999988877777766
Q ss_pred EEccC
Q 020113 319 EIKSS 323 (331)
Q Consensus 319 ~i~~~ 323 (331)
.++..
T Consensus 364 ~i~~~ 368 (456)
T PRK14356 364 KANHL 368 (456)
T ss_pred Eeccc
Confidence 55543
No 159
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.02 E-value=1.9e-09 Score=90.09 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=61.7
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEc---------------------------
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVE--------------------------- 292 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~--------------------------- 292 (331)
..+++++.|++++.|. +++||++|.|+ .++.+.+++||++|.|++++.|.
T Consensus 20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~--~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~ 96 (204)
T TIGR03308 20 SKLGRYTEIGERTRLR-EVALGDYSYVM--RDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASD 96 (204)
T ss_pred cEeCCCcEECCCcEEe-CCEECCCCEEC--CCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccc
Confidence 3466667777767665 67777788887 77888888888888888888775
Q ss_pred ----------cceEECCCcEECcccEEc-CcEEccCeEEccCcc
Q 020113 293 ----------NMTILGEDVHVADEVYSN-GAVVLPHKEIKSSIV 325 (331)
Q Consensus 293 ----------~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~ 325 (331)
.+++||++|.||.++.|. ++.|+++++|+++..
T Consensus 97 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 97 DADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAV 140 (204)
T ss_pred cccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 247788888888888774 677777777776643
No 160
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.02 E-value=1.7e-09 Score=87.16 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEeC---------CEEcCCCEECCCcEEccceEECCCcEECccc
Q 020113 239 SSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACISS---------SIIGWHSTVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 239 ~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
.++|+++++|.. +++|+++++||++|.|+ .++.+.. ++||++|.||.++.|.++++||++|.||+++
T Consensus 67 ~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~--~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s 144 (162)
T TIGR01172 67 GARIGRGVFIDHGTGVVIGETAVIGDDVTIY--HGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANS 144 (162)
T ss_pred CCEECCCeEECCCCeEEECCCCEECCCCEEc--CCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCC
Confidence 344555555543 35555666666666666 5555542 4677777777777777777777777777777
Q ss_pred EEcCc
Q 020113 308 YSNGA 312 (331)
Q Consensus 308 ~i~~~ 312 (331)
++.+.
T Consensus 145 ~V~~d 149 (162)
T TIGR01172 145 VVLKD 149 (162)
T ss_pred EECCC
Confidence 77653
No 161
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.02 E-value=2.1e-09 Score=82.21 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVH 302 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~ 302 (331)
...|++++.|+++++|++++.||++|.|+ .++.+ .+++|+++|.||.++.+.+++.|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~--~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ 93 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIG--PNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIGEYAL 93 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEc--CCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEECCCCE
Confidence 34556666666666666666666666666 44443 3466777777777777777677777777
Q ss_pred ECcccEEcCc
Q 020113 303 VADEVYSNGA 312 (331)
Q Consensus 303 i~~~~~i~~~ 312 (331)
|++++.+...
T Consensus 94 i~~~~~v~~~ 103 (119)
T cd03358 94 VGAGAVVTKD 103 (119)
T ss_pred EccCCEEeCc
Confidence 7777777654
No 162
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.01 E-value=6.9e-09 Score=86.18 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=55.7
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc------------------ceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN------------------MTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~------------------~~~i 297 (331)
.+++++.|.+++.+ +.++.||+++.|+ .+++|. +..||++|.||++|.|.. ..+|
T Consensus 57 ~ig~~~~I~~~~~~~~g~ni~IG~~v~In--~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~I 134 (203)
T PRK09527 57 TVGENAWVEPPVYFSYGSNIHIGRNFYAN--FNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITI 134 (203)
T ss_pred hcCCCcEEcCCEEEeeCCCcEEcCCcEEC--CCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEE
Confidence 47888888888776 4678888888888 667773 367888888888887752 1567
Q ss_pred CCCcEECcccEEc-CcEEccCeEEccC
Q 020113 298 GEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 298 ~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
|++|.||.++.|. ++.|+++++|+++
T Consensus 135 Gd~v~IG~~~~I~~gv~IG~~~vIgag 161 (203)
T PRK09527 135 GNNVWIGSHVVINPGVTIGDNSVIGAG 161 (203)
T ss_pred CCCcEECCCCEEcCCCEECCCCEECCC
Confidence 7777777776663 4555555554443
No 163
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.01 E-value=2.2e-09 Score=90.33 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=35.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc-------------------ceEECCC
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN-------------------MTILGED 300 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~-------------------~~~i~~~ 300 (331)
.|+++++|+++++|++++.||++|.|+ .++.|. +++|+++|.|++++.|.. .++|+++
T Consensus 21 ~ig~~~~i~~~~~i~~~~~Ig~~~~i~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~ 98 (205)
T cd03352 21 VIGDGVVIGPGVVIGDGVVIGDDCVIH--PNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDD 98 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC--CCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCC
Confidence 344444444445554455555555555 445553 355555555555555531 2555666
Q ss_pred cEECcccEEc
Q 020113 301 VHVADEVYSN 310 (331)
Q Consensus 301 ~~i~~~~~i~ 310 (331)
+.|+.++.+.
T Consensus 99 ~~Ig~~~~i~ 108 (205)
T cd03352 99 VEIGANTTID 108 (205)
T ss_pred EEECCCCEEe
Confidence 6666666653
No 164
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.01 E-value=1.5e-09 Score=94.28 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=5.7
Q ss_pred EEcCCCEECCCcEE
Q 020113 278 IIGWHSTVGRWARV 291 (331)
Q Consensus 278 ~i~~~~~ig~~~~i 291 (331)
+||++|.|+++|+|
T Consensus 78 ~IG~~~~I~~~~~I 91 (254)
T TIGR01852 78 IIGDNNTIREFVTI 91 (254)
T ss_pred EECCCCEECCCCEE
Confidence 34444444444333
No 165
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.01 E-value=1.2e-09 Score=93.02 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECC--------CcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGR--------WARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~--------~~~i~~~~~i~~~~~i~~~~~i 309 (331)
...|++++.|.+++.||++|.|+++|.|+ .+++| .+|.|+.++.|.. ++.|++++.||.+++|.+++.|
T Consensus 104 ~~~I~~~~~I~~~~~IG~~~~I~~~a~I~--~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~I 181 (231)
T TIGR03532 104 NAVIMMGAVINIGAEIGEGTMIDMNAVLG--GRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRV 181 (231)
T ss_pred CCEEecCcccCCCeEECCCCEEccccccC--CCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEE
Confidence 34455556666677788888888888887 66777 4688888888864 5788888888888888888888
Q ss_pred -cCcEEccCeEEccCccCCcc
Q 020113 310 -NGAVVLPHKEIKSSIVNPEI 329 (331)
Q Consensus 310 -~~~~v~~~~~i~~~~~~~~~ 329 (331)
.+++|++++++.+++...++
T Consensus 182 g~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 182 GKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred CCCCEECCCCEEccccCCCcE
Confidence 57888888888777665543
No 166
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.00 E-value=2e-09 Score=92.87 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEc-
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN- 310 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~- 310 (331)
.|++++.|.+++.|+.++.||++|.|+ .++.|. +++|+++|.||.+|.|..+++||++++|+.++.|.
T Consensus 134 ~Ig~gt~I~~~a~IG~~a~IG~nv~I~--~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~ 211 (272)
T PRK11830 134 YVDEGTMVDTWATVGSCAQIGKNVHLS--GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQ 211 (272)
T ss_pred EECCCcEEccccEECCCCEECCCcEEC--CCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 456666666666666666666666666 445543 36777777777777776667777777777777773
Q ss_pred CcEEcc
Q 020113 311 GAVVLP 316 (331)
Q Consensus 311 ~~~v~~ 316 (331)
++.|++
T Consensus 212 gt~I~~ 217 (272)
T PRK11830 212 STKIYD 217 (272)
T ss_pred CeEECc
Confidence 566664
No 167
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.00 E-value=2.7e-09 Score=86.63 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=64.6
Q ss_pred ccCCCceEecceEEcC----CcEECCCcEECCCCCceEe-----CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 241 KLATGSNIIGNVLVHE----GAKIGDGCLIGPDKHACIS-----SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~-----~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++++++|++++.|+. ++.||++|.|+ +++.|. ++.||++|.|+.++.|.+.++||++|.||.++.|.+
T Consensus 22 ~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~--~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~ 99 (167)
T cd00710 22 IIGDNVFVGPGASIRADEGTPIIIGANVNIQ--DGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN 99 (167)
T ss_pred EECCCcEECCCcEEeCCCCCcEEECCCCEEC--CCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEEC
Confidence 3555555555555544 24677777777 677773 577899999999999988899999999999999998
Q ss_pred cEEccCeEEccCccC
Q 020113 312 AVVLPHKEIKSSIVN 326 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~ 326 (331)
+.|++++.|+.+...
T Consensus 100 ~~Ig~~~~Ig~~s~i 114 (167)
T cd00710 100 AKVGDNCVIGHNAVV 114 (167)
T ss_pred CEECCCCEEcCCCEE
Confidence 889988888876543
No 168
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.99 E-value=2.5e-09 Score=92.17 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=52.3
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc--------ceEECCCcEECcccEE-cC
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN--------MTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~--------~~~i~~~~~i~~~~~i-~~ 311 (331)
|++++.|. +++++.++.|+++|.|+ .++.|. +++||++|.|+.++.|.+ .++|+++|.||.++.| .+
T Consensus 118 Ig~gavI~-p~~V~iGa~Ig~gt~I~--~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G 194 (272)
T PRK11830 118 IAPNVVLM-PSYVNIGAYVDEGTMVD--TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG 194 (272)
T ss_pred ECCCcEEE-EEEECCCCEECCCcEEc--cccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC
Confidence 44444444 23444566677777776 556664 467777777777776654 2678888888888877 56
Q ss_pred cEEccCeEEccCccC
Q 020113 312 AVVLPHKEIKSSIVN 326 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~ 326 (331)
++|+++++|+.++..
T Consensus 195 v~IGdgavIgag~vV 209 (272)
T PRK11830 195 VIVEEGSVLGMGVFL 209 (272)
T ss_pred CEECCCCEEcCCCEE
Confidence 677777766665544
No 169
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.99 E-value=3e-09 Score=85.82 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=38.4
Q ss_pred cCCCceEecceEEcCC---cEECCCcEECCCCCceEeC-------------CEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 242 LATGSNIIGNVLVHEG---AKIGDGCLIGPDKHACISS-------------SIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~---~~i~~~~~I~~~~~~~i~~-------------s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
+++.+.|.++++|..+ +.||++|.|+ ++++|.. ++||+++.|++++.+.+ ++|++++.||+
T Consensus 24 ig~~~~I~~~~~I~g~~~~v~IG~~~~I~--~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~ 100 (161)
T cd03359 24 LNGKTIIQSDVIIRGDLATVSIGRYCILS--EGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA-AQIGSYVHIGK 100 (161)
T ss_pred ECCceEEcCCCEEeCCCcceEECCCcEEC--CCCEEeCCccccCCCccccCeEECCccEECCCCEEEe-eEEcCCcEECC
Confidence 4444444444444432 3455555555 4444432 35666666666666655 55555555555
Q ss_pred ccEE-cCcEEccCeEEc
Q 020113 306 EVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 306 ~~~i-~~~~v~~~~~i~ 321 (331)
++.| .++.|++++.|+
T Consensus 101 ~~~Ig~~~~I~~~~~i~ 117 (161)
T cd03359 101 NCVIGRRCIIKDCVKIL 117 (161)
T ss_pred CCEEcCCCEECCCcEEC
Confidence 5544 234444433333
No 170
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.99 E-value=1.4e-09 Score=100.38 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=64.3
Q ss_pred eEecceEEc---CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC-----cEEccCe
Q 020113 247 NIIGNVLVH---EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG-----AVVLPHK 318 (331)
Q Consensus 247 ~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-----~~v~~~~ 318 (331)
.|+++|.|+ .+|+||++|.|+ ++|+|++|+|+++|.||++|.|.+ |+|++++.|++++.+.+ .+|++++
T Consensus 295 ~Ig~~~~I~~~v~~s~ig~~~~I~--~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~~~~~~~~ig~~~ 371 (380)
T PRK05293 295 LVVEGCVVYGTVEHSVLFQGVQVG--EGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENE 371 (380)
T ss_pred EECCCCEEcceecceEEcCCCEEC--CCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcCCCceeEEEeCCC
Confidence 444555554 267899999999 889999999999999999999999 99999999999999986 7888888
Q ss_pred EEccCc
Q 020113 319 EIKSSI 324 (331)
Q Consensus 319 ~i~~~~ 324 (331)
+|+++.
T Consensus 372 ~~~~~~ 377 (380)
T PRK05293 372 VIGVGT 377 (380)
T ss_pred CCCCCc
Confidence 877663
No 171
>PLN02739 serine acetyltransferase
Probab=98.98 E-value=4.3e-09 Score=92.62 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=62.3
Q ss_pred cccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 236 KNSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 236 ~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..+.++|++++.|. .+++||++++||++|.|. .+++|. ..+||++|.||.++.|.+++.||+++.||
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~--~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIG 285 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSIL--HGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVA 285 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEc--CCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEEC
Confidence 45567788888885 478888888888888888 777774 36899999999999999889999999999
Q ss_pred cccEEcC
Q 020113 305 DEVYSNG 311 (331)
Q Consensus 305 ~~~~i~~ 311 (331)
.|++|..
T Consensus 286 AGSVV~k 292 (355)
T PLN02739 286 AGSLVLK 292 (355)
T ss_pred CCCEECC
Confidence 9999864
No 172
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.97 E-value=1.4e-08 Score=90.59 Aligned_cols=155 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHcC------------CCEEEEEec-cChHHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAVG------------VTEVVLAIN-YQPEVMLNFL 64 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~g------------i~~i~iv~~-~~~~~i~~~~ 64 (331)
|.+|+||||.|+||+ ...||+|+|++ |+|++++.++++...+ +..+ +.++ +..+.+++++
T Consensus 16 va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~-imtS~~t~~~t~~~~ 91 (323)
T cd04193 16 VAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWY-IMTSEATHEETRKFF 91 (323)
T ss_pred EEEEEECCCcccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEE-EEcChhHhHHHHHHH
Confidence 458999999999994 47899999997 7999999999998842 4444 5555 6678899999
Q ss_pred HHhhhccCe---EEEEeeCC---------------------cccCChHHHHH-----HHhhccCCCCCcEEEEeCCeecc
Q 020113 65 KEFEKKLEI---KITCSQET---------------------EPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISE 115 (331)
Q Consensus 65 ~~~~~~~~~---~v~~~~~~---------------------~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~ 115 (331)
++ .+.++. .+.+..|. .|.|.++-... .++.+....-+++.+.+.|.+.-
T Consensus 92 ~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 92 KE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred Hh-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 87 233333 34433321 24566553322 23333333333899999999543
Q ss_pred -ccHHHHHHHHhhcCCceEEE---ec-CCCCceEEEE-cCCcCceeEeeecC
Q 020113 116 -YPLKQMIEFHRGRGGEASIM---VD-EPSKYGVVVM-EETTGKVEKFVEKP 161 (331)
Q Consensus 116 -~~l~~~l~~~~~~~~~~~i~---~~-~~~~~~~v~~-d~~~~~v~~~~ek~ 161 (331)
..-..++-.+.+.+.++.+- .. ..+.-|.+.. |.. -.+.++.|-|
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~ 221 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEIS 221 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCC
Confidence 33456777777888887765 22 2344555444 332 3455665544
No 173
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.96 E-value=2.7e-09 Score=79.38 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=58.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
.|++++.|+ ++.|. ++.|+++|.|+ +++.|.+|++++++.||.++.+.+ |+|++++.|++++.+.+.
T Consensus 14 ~Ig~~~~I~-~~~I~-~svi~~~~~Ig--~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 14 LVSEGCIIS-GGTVE-NSVLFRGVRVG--SGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EECCCCEEc-CeEEE-eCEEeCCCEEC--CCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEECCC
Confidence 356666666 66664 78889999999 889999999999999999999987 999999999999999765
No 174
>PLN02357 serine acetyltransferase
Probab=98.96 E-value=4.5e-09 Score=93.26 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.+.|+++.+|.. +++||++++||++|.|. .+++|. +++||++|.||.++.|.+++.||++++||.
T Consensus 230 ~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~--~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 230 HPGAKIGQGILLDHATGVVIGETAVVGNNVSIL--HNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred CCCCEECCCeEECCCCceEECCCCEECCCCEEe--CCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 44555666666654 56677777777777777 556663 378999999999999977799999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
+++|.+
T Consensus 308 gSVV~~ 313 (360)
T PLN02357 308 GSVVLK 313 (360)
T ss_pred CCEECc
Confidence 999863
No 175
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.96 E-value=1.5e-09 Score=102.46 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=58.5
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
..|++++.|++++.|. ++.|+++|.|+ +++.|.+++|+++|.||++++|.++++|+++|+||+++.+.++.|+.++
T Consensus 280 ~~ig~~~~I~~~~~i~-~~~i~~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~ 355 (451)
T TIGR01173 280 VKIGDDVVIGPGCVIK-NSVIGSNVVIK--AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGS 355 (451)
T ss_pred eEECCCCEECCCcEEe-eeEecCCCEEe--eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCc
Confidence 4455666666666554 56777778887 7788888999999999999999977999999999888877766666543
No 176
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.96 E-value=4.7e-09 Score=87.74 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=55.8
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+++.+.|++.+.|. ++.||++|.|+ ++|+|.+++||++|+|+.+|.+.+ ++||++|.|++++.+.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig--~~a~I~~s~IG~~s~I~~~~~i~~-~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIG--ERTRLREVALGDYSYVMRDCDIIY-TTIGKFCSIAAMVRIN 69 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEEC--CCcEEeCCEECCCCEECCCcEEee-eEECCCCEECCCCEEC
Confidence 56778888888885 68999999999 889999999999999999999887 8888888888887663
No 177
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.96 E-value=3.4e-09 Score=87.35 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=41.0
Q ss_pred ccCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVEN 293 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~ 293 (331)
.+.+++++++.|+|.|+|++++.||++++|+ ++++|+ .+.||.++.|.+++.|+.
T Consensus 13 e~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~--shvvv~G~T~IG~~n~I~~~A~iG~ 68 (260)
T COG1043 13 EPGAEIGEDVKIGPFCIIGPNVEIGDGTVLK--SHVVVEGHTTIGRNNRIFPFASIGE 68 (260)
T ss_pred CCCCCcCCCCEECceEEECCCcEECCCcEEc--ccEEEeCCeEECCCCEEecccccCC
Confidence 3456677777778888888888888888887 777776 477777777777777665
No 178
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.96 E-value=4e-09 Score=85.09 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=64.8
Q ss_pred CccCCCceEecceEEcC------------CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECccc
Q 020113 240 SKLATGSNIIGNVLVHE------------GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEV 307 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~------------~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~ 307 (331)
..+++++.|+++++|.. ++.||++|.|+ +++.+.+++|++++.||+++.|+.+++|+++++|++++
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig--~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~ 120 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIG--ENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGT 120 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEEC--CCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCC
Confidence 45677777777777764 35788888888 88999889999999999999998889999999999998
Q ss_pred EE-cCcEEccCeEEc
Q 020113 308 YS-NGAVVLPHKEIK 321 (331)
Q Consensus 308 ~i-~~~~v~~~~~i~ 321 (331)
++ .++.+.+++++.
T Consensus 121 ~V~~~~~i~~~~vv~ 135 (161)
T cd03359 121 VVPPDTVIPPYSVVS 135 (161)
T ss_pred EECCCCEeCCCCEEe
Confidence 88 467777777775
No 179
>PLN02694 serine O-acetyltransferase
Probab=98.95 E-value=3.2e-09 Score=91.65 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=54.3
Q ss_pred ccCCccCCCceEec--ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNIIG--NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.++|++++.|.. +++||++++||++|.|. .++++. +++||++|.||.++.|.+++.||++++||.
T Consensus 164 ~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~--~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 164 HPAAKIGKGILFDHATGVVIGETAVIGNNVSIL--HHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred CCcceecCCEEEeCCCCeEECCCcEECCCCEEe--ecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 33455666666654 56666677777777776 555553 468999999999999977799999999999
Q ss_pred ccEEcC
Q 020113 306 EVYSNG 311 (331)
Q Consensus 306 ~~~i~~ 311 (331)
++++..
T Consensus 242 gSVV~k 247 (294)
T PLN02694 242 GSVVLI 247 (294)
T ss_pred CCEECC
Confidence 999863
No 180
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=2.7e-09 Score=94.96 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=61.0
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCc
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGA 312 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 312 (331)
..++.||+|.+.+ .+|+|+.++.|+ ++|+|++|+|+++|.||++|+|++ ++|.+||.|++|++|.+.
T Consensus 297 SLv~~GciI~G~V---~nSVL~~~v~I~--~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 297 SLVAGGCIISGTV---ENSVLFRGVRIG--KGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeCCeEEEeEE---EeeEEecCeEEC--CCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 3478888888833 399999999999 999999999999999999999999 999999999999999766
No 181
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.94 E-value=3.6e-07 Score=84.59 Aligned_cols=304 Identities=13% Similarity=0.154 Sum_probs=168.3
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+|.||||.|+||+- ..||.++++ .|+++++..++++... | +--+++.+....+++.++++++.. .+..+
T Consensus 82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i 157 (469)
T PLN02474 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI 157 (469)
T ss_pred EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence 68889999999998 789999999 5789999988877653 3 334444444556889999988431 22222
Q ss_pred EEeeC------------------------CcccCChHHHH---HH--HhhccCCCCCcEEEEeCCeeccccHHHHHHHHh
Q 020113 76 TCSQE------------------------TEPLGTAGPLA---LA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (331)
Q Consensus 76 ~~~~~------------------------~~~~G~~~al~---~~--~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 126 (331)
.+..| ..|.|.++-.. .. ++.+....-+++.+.+.|.+...-=..++.++.
T Consensus 158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~ 237 (469)
T PLN02474 158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI 237 (469)
T ss_pred EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence 22111 12445544322 11 333333333499999999964433346777778
Q ss_pred hcCCceEEE----ecCCCCceEEEE-cCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhc-ccC-----
Q 020113 127 GRGGEASIM----VDEPSKYGVVVM-EETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI-ELK----- 187 (331)
Q Consensus 127 ~~~~~~~i~----~~~~~~~~~v~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l-~~~----- 187 (331)
+++++.++- .....+-|.+.. +.. -++.++.+-|++. .-.+.+++.+.|+-+.++.+ +..
T Consensus 238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~ 316 (469)
T PLN02474 238 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKME 316 (469)
T ss_pred hcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCCce
Confidence 888887766 122233454443 332 3467776655421 23578999999999888765 111
Q ss_pred ----CC--------CcccchHHHHHhcCcEEEEEe-CceEEecCCHHHHHHHHHHHHhhhcc---ccCC-ccCCCceEec
Q 020113 188 ----PT--------SIEKEVFPEIAAENKLFAMVL-PGFWMDIGQPKDYITGLRLYLDFLQK---NSSS-KLATGSNIIG 250 (331)
Q Consensus 188 ----~~--------~~~~~~l~~l~~~~~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~~~---~~~~-~i~~~~~i~~ 250 (331)
.. .+|..+...+---.+..++.+ ...|..+-+.+|++.+...+..-... ..+. ..+...
T Consensus 317 ~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~~p---- 392 (469)
T PLN02474 317 IIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPSNP---- 392 (469)
T ss_pred eecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCCCC----
Confidence 00 111111111111122333333 23478888888888777766544321 1111 111111
Q ss_pred ceEEcCC-cEECCCcEE--CCCCCceEe--CCEEcCCCEECCCcEEccceEECCC----cEECcccEEcCcEEccC
Q 020113 251 NVLVHEG-AKIGDGCLI--GPDKHACIS--SSIIGWHSTVGRWARVENMTILGED----VHVADEVYSNGAVVLPH 317 (331)
Q Consensus 251 ~~~i~~~-~~i~~~~~I--~~~~~~~i~--~s~i~~~~~ig~~~~i~~~~~i~~~----~~i~~~~~i~~~~v~~~ 317 (331)
.+.+++. ..+++...= + --+.++ .-.|..+++.|.++++.+.++|-.+ ..|-+|+++.+.+|.++
T Consensus 393 ~IeL~~~f~~v~~f~~rf~~--iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 393 SIELGPEFKKVANFLSRFKS--IPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred cEEECcccccHHhHHHhcCC--CCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeeccc
Confidence 1122211 011111100 1 112222 2346677788888888776666544 47888999888777665
No 182
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.94 E-value=4.3e-09 Score=90.92 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=43.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECC------------CcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGE------------DVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~------------~~~i~ 304 (331)
+.+.|++++.|++++.|+++++|+++++|| +++.|. +++|..++.||.++.|..+++|+. .+.||
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG--~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIG--DGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEEC--CCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 344455555555555555555555555555 556553 556666666666666666566654 45566
Q ss_pred cccEEc-CcEEcc
Q 020113 305 DEVYSN-GAVVLP 316 (331)
Q Consensus 305 ~~~~i~-~~~v~~ 316 (331)
+++.|. ++.|..
T Consensus 82 ~~~~I~e~vtI~~ 94 (255)
T PRK12461 82 DRNVIREGVTIHR 94 (255)
T ss_pred CceEECCccEEec
Confidence 666663 455543
No 183
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.94 E-value=3.5e-09 Score=91.38 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=53.0
Q ss_pred cCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 238 SSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 238 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
+.++|++++.|. .+++||.+++||++|.|. .+++|. ..+||++|.||.+|.|.+++.||++++||+|
T Consensus 146 ~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~--~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAg 223 (273)
T PRK11132 146 PAAKIGRGIMLDHATGIVIGETAVIENDVSIL--QSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAG 223 (273)
T ss_pred CcceECCCeEEcCCCCeEECCCCEECCCCEEc--CCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCC
Confidence 344555555554 245666667777777776 556664 2688999999999999999999999999999
Q ss_pred cEEcC
Q 020113 307 VYSNG 311 (331)
Q Consensus 307 ~~i~~ 311 (331)
+++.+
T Consensus 224 SvV~~ 228 (273)
T PRK11132 224 SVVLQ 228 (273)
T ss_pred CEECc
Confidence 98864
No 184
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=2.6e-09 Score=101.02 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=59.5
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
..+++++.|+++++|. +++|+++|.|+ +++.|.+|+|+++|.||+++.|..++++++++.||+++.++++.++.++.
T Consensus 284 v~ig~~~~I~~~~~i~-~~~ig~~~~I~--~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~ 360 (456)
T PRK09451 284 VTLGNRVKIGAGCVLK-NCVIGDDCEIS--PYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSK 360 (456)
T ss_pred cEECCCCEECCCceEe-cCEEcCCCEEc--CCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCc
Confidence 4566667777777764 67778888888 77888889999999999999998778888888888887776555544444
Q ss_pred Ec
Q 020113 320 IK 321 (331)
Q Consensus 320 i~ 321 (331)
++
T Consensus 361 ~~ 362 (456)
T PRK09451 361 AG 362 (456)
T ss_pred cC
Confidence 33
No 185
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=4.2e-09 Score=99.30 Aligned_cols=63 Identities=29% Similarity=0.465 Sum_probs=37.3
Q ss_pred CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEcc
Q 020113 257 GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKS 322 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 322 (331)
+++||++|.|| .++.|. +|+||++|.||++|.+.+ ++|++++.+++++.+.++.|++++.|+.
T Consensus 303 ~~~Ig~~~~Ig--~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~~~~~i~~~~~i~~~~ig~~~~Ig~ 366 (446)
T PRK14353 303 GAHVGEGAEVG--PYARLRPGAELGEGAKVGNFVEVKN-AKLGEGAKVNHLTYIGDATIGAGANIGA 366 (446)
T ss_pred ccEECCCcEEC--CCeEEeccceecCCeEEcCceEEec-eEECCCCEECCeeEEcCcEEcCCcEECC
Confidence 56677777777 667775 677777777777776654 5555554444444444444444444433
No 186
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=2.5e-09 Score=101.49 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=51.3
Q ss_pred ccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCe
Q 020113 241 KLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~ 318 (331)
.|++++.|+++++|+ +++|+++|.|+ ++++|.+++|+++|.||+++.+..+++||+++.|++++.|.+++|+.++
T Consensus 290 ~Ig~~~~I~~~~~i~-~svI~~~~~I~--~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~ 364 (481)
T PRK14358 290 RVADGVTIGAYSVVT-DSVLHEGAVIK--PHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGV 364 (481)
T ss_pred EECCCCEECCCCEEe-eeEECCCCEEe--ecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCc
Confidence 355555555555553 45667777777 6777778888888888888888766888888888887665544443333
No 187
>PRK10502 putative acyl transferase; Provisional
Probab=98.90 E-value=1e-08 Score=84.34 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc---------------ceEEC
Q 020113 239 SSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN---------------MTILG 298 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~---------------~~~i~ 298 (331)
.+++++++.|.+++.|.. +..||++|.|+ +++.|. ..+||++|.|+.+++|.. ..+||
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig--~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Ig 128 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIG--DDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIG 128 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEEC--CCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEc
Confidence 356778888887777653 57777777777 667774 467888888887777632 14677
Q ss_pred CCcEECcccEE-cCcEEccCeEEccCc
Q 020113 299 EDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 299 ~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
++|.||.++.| .++.|+++++|+++.
T Consensus 129 d~~~Ig~~a~I~~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 129 EGCWLAADVFVAPGVTIGSGAVVGARS 155 (182)
T ss_pred CCcEEcCCCEEcCCCEECCCCEECCCC
Confidence 77777777777 466666666666443
No 188
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.87 E-value=7e-09 Score=98.11 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=60.1
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEc
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVL 315 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~ 315 (331)
+..|++++.|+++++|+ +++||++|+|+ .+|++.+|+|+++|.||+++++..++.|+++++||+++.+.+++|+
T Consensus 286 ~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~--~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig 359 (459)
T PRK14355 286 DTRIGEGCTIEQGVVIK-GCRIGDDVTVK--AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMG 359 (459)
T ss_pred CCEECCCCEECCCCEEe-CCEEcCCCEEC--CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEEC
Confidence 45567777777777775 68888888888 8899999999999999999999988999999999888765554433
No 189
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.86 E-value=1.2e-07 Score=88.38 Aligned_cols=180 Identities=18% Similarity=0.259 Sum_probs=110.0
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHc--------------CCCEEEEEeccChHHHHHH
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GVTEVVLAINYQPEVMLNF 63 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~--------------gi~~i~iv~~~~~~~i~~~ 63 (331)
|.+||||||.|+||+. ..||+|+|| .|+||++++++++... .+..+++.+.+..+.++++
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4689999999999975 889999999 4899999999999874 2455555566777889999
Q ss_pred HHHhhhccCe---EEEEeeC----------------------CcccCChHHHHH-----HHhhccCCCCCcEEEEeCCee
Q 020113 64 LKEFEKKLEI---KITCSQE----------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVI 113 (331)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~----------------------~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i 113 (331)
+.+. ..++. .+.+..| ..|.|.++-... .++.+....-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 9862 12221 1222111 124566553332 133443333338999999997
Q ss_pred cccc-HHHHHHHHhhcCC-ceEEE---ecCCCCceEEEEcCCcCceeEeeecCCCC-------C----CCeEEEEEEEEC
Q 020113 114 SEYP-LKQMIEFHRGRGG-EASIM---VDEPSKYGVVVMEETTGKVEKFVEKPKNF-------V----GNKINAGIYLLN 177 (331)
Q Consensus 114 ~~~~-l~~~l~~~~~~~~-~~~i~---~~~~~~~~~v~~d~~~~~v~~~~ek~~~~-------~----~~~~~~Giy~~~ 177 (331)
.... -..++-++.+.+. ++... ..+.+.-|++......-.+.++.|-++.. . -...++...+|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 4433 3456666666666 44332 22334556655433212466666643211 0 134577888899
Q ss_pred hhhHhhc
Q 020113 178 PSVLDRI 184 (331)
Q Consensus 178 ~~~l~~l 184 (331)
-++++.+
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888654
No 190
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=1.2e-08 Score=75.37 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred CccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 240 SKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
..+++++.|+++++|++++.||++|.|+ . .|.+|+|++++.++.++.|++ ++||+++.||+++...+
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig--~--~i~~svi~~~~~i~~~~~lg~-siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIG--G--EVEDSIIEGYSNKQHDGFLGH-SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEEC--C--EECccEEcCCCEecCcCEEee-eEECCCCEECCCceecc
Confidence 3445555555555555555555555555 2 456788888888888888876 88888888888877654
No 191
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.86 E-value=2.1e-08 Score=86.54 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=12.7
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEc
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIK 321 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~ 321 (331)
.+||++|.||.|+.| .++.|+.+++|+
T Consensus 194 p~IGd~V~IGaga~Ilggv~IG~~a~IG 221 (273)
T PRK11132 194 PKIREGVMIGAGAKILGNIEVGRGAKIG 221 (273)
T ss_pred CEECCCcEEcCCCEEcCCCEECCCCEEC
Confidence 455555555555554 233444444444
No 192
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.85 E-value=1.7e-08 Score=75.80 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=43.6
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe--------------------CCEEcCCCEECCCcEEccceEEC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS--------------------SSIIGWHSTVGRWARVENMTILG 298 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~--------------------~s~i~~~~~ig~~~~i~~~~~i~ 298 (331)
++++++.|++++.|.. ++.||++|.|+ +++.|. +++||++|.||.++.+..++.|+
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig 80 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIG--PNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIG 80 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEEC--CCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEEC
Confidence 3555555555555554 55555555555 444442 45566666666666665556666
Q ss_pred CCcEECcccEEcCcEEccCeEE
Q 020113 299 EDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 299 ~~~~i~~~~~i~~~~v~~~~~i 320 (331)
++++|+.++.+.. .+.++.++
T Consensus 81 ~~~~i~~~~~v~~-~i~~~~i~ 101 (109)
T cd04647 81 DGAVVGAGSVVTK-DVPPNSIV 101 (109)
T ss_pred CCCEECCCCEEee-ECCCCCEE
Confidence 6666666666653 23344333
No 193
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.85 E-value=6.1e-09 Score=85.90 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+.|+|++.|++++.|++++.||+.|+||++ ..|++++.|+++++|.+.+.||++++|.+.+.|
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~-------V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~i 66 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPN-------VEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASI 66 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCC-------cEECCCcEEcccEEEeCCeEECCCCEEeccccc
Confidence 3568888888888888888888888888844 667777777777777777777777777776655
No 194
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.84 E-value=1.4e-08 Score=82.51 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=44.6
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.++++++|.++++|. .+..||++|.|+ +++.|. .++||++|+||.++.|..++.||+
T Consensus 64 ~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig--~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 64 HIGDNFYANFNCTILDVAPVTIGDNVLIG--PNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred EECCCceEcCCEEEeccCcEEECCCCEEC--CCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 355555555555443 244566666666 445552 467777777777777776677777
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
+|+||.++++.+.
T Consensus 142 ~~~VgagavV~~~ 154 (169)
T cd03357 142 NSVIGAGSVVTKD 154 (169)
T ss_pred CCEECCCCEEccc
Confidence 7777777777664
No 195
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.84 E-value=6.9e-08 Score=81.91 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=80.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (331)
|||+|.|.++|+.. |.|.+++|+|||+|+++.+.+++ +++|+|.+. .+++.+.+.++ +..+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHHc----CCeeEEcChh
Confidence 79999999999955 99999999999999999999986 789888775 34456666654 4566555443
Q ss_pred cccCChHHHHHHHhhccCCCCCcEEEEeCCee--ccccHHHHHHHHhhcCCc
Q 020113 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGRGGE 131 (331)
Q Consensus 82 ~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~ 131 (331)
.. ....+...+......+..+.++.+.||.. ....+.++++.+.+...+
T Consensus 70 ~~-~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LA-DDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SS-SHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hc-CCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 33 33344444444444333336778888993 345589999999888765
No 196
>PRK10191 putative acyl transferase; Provisional
Probab=98.84 E-value=2.3e-08 Score=78.56 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=52.8
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEEC-CCcEEccceEECCCcEECcccEE-cC
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVG-RWARVENMTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig-~~~~i~~~~~i~~~~~i~~~~~i-~~ 311 (331)
.....|++++.|++++.|+. +++|++++.|| +++.|. +++||+..... ..+.|+++|.||.++.|..++.| .+
T Consensus 39 ~~g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IG--d~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 39 FFGYEIQAAATIGRRFTIHHGYAVVINKNVVAG--DDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred HhCcccCCCCEECCCeEECCCCeEEECCCcEEC--CCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCC
Confidence 34556788888888888887 57777777777 545442 34444332211 11344555555555555555555 35
Q ss_pred cEEccCeEEccCccCCc
Q 020113 312 AVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 312 ~~v~~~~~i~~~~~~~~ 328 (331)
+++++++++..++...+
T Consensus 117 ~~Igags~V~~dv~~~~ 133 (146)
T PRK10191 117 VTVGAGSVVLDSVPDNA 133 (146)
T ss_pred CEECCCCEECCccCCCc
Confidence 66666777666665543
No 197
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.84 E-value=2.1e-08 Score=75.06 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=48.7
Q ss_pred ccCCCceEecceEEc--CCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcE
Q 020113 241 KLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVH 302 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~ 302 (331)
.+++++.|+++++|. ....||++|.|+ +++.| ....|+++|+||.++.|..++.|++++.
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~--~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~ 82 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACIS--QGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAV 82 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEEC--CCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCE
Confidence 456666666666654 245666666666 44444 2467888888888888887788888888
Q ss_pred ECcccEEcCcE
Q 020113 303 VADEVYSNGAV 313 (331)
Q Consensus 303 i~~~~~i~~~~ 313 (331)
|++++.+.+.+
T Consensus 83 i~~gs~v~~~~ 93 (107)
T cd05825 83 VGARSVVVRDL 93 (107)
T ss_pred ECCCCEEeCcC
Confidence 88888887653
No 198
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.83 E-value=1.7e-08 Score=87.21 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=35.2
Q ss_pred CCEEcCCCEECCCcEE----ccc----eEECCCcEECcccEEcCcEEccCeEEccCccC
Q 020113 276 SSIIGWHSTVGRWARV----ENM----TILGEDVHVADEVYSNGAVVLPHKEIKSSIVN 326 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i----~~~----~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 326 (331)
+++||++|.||.+|+| .++ +.||++|.||.|+.| +..|+++++|+.+...
T Consensus 224 GavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavV 281 (341)
T TIGR03536 224 GVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYI 281 (341)
T ss_pred CCEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEE
Confidence 4555555555555555 345 778888888888888 7788888888877654
No 199
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.82 E-value=1.1e-08 Score=95.18 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+..++++|.|+ ++.|. +|+||++|.|+ ++|.|++|+|+++|.||.+|+|.+ |+|+++++|++++++.+
T Consensus 315 ~~~ig~~~~I~-~~~i~-~svIg~~~~I~--~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 315 DSLVSAGSIIS-GATVR-NSVLSPNVVVE--SGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV 382 (407)
T ss_pred eCEEcCCCEEC-CeeeE-cCEECCCCEEC--CCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence 35678888887 77776 69999999999 899999999999999999999999 99999999999999966
No 200
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.81 E-value=3.4e-08 Score=83.10 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=34.4
Q ss_pred cCCCceEecceEEcCCcEECCCcEECCCCCceE-eCCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI-SSSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
+++++.|.+.++|++++.||++|.|+ .++.| .++.||++|.|++++.|..+++|+++|.|++++.|
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~--~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIG--PGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEC--CCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 44555555555555555555555555 44444 24555555555555555555555555555555544
No 201
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.81 E-value=1.4e-07 Score=77.38 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=15.5
Q ss_pred cCCcEECCCcEECCCCCceEeC-C--EEcCCCEECCCcEE
Q 020113 255 HEGAKIGDGCLIGPDKHACISS-S--IIGWHSTVGRWARV 291 (331)
Q Consensus 255 ~~~~~i~~~~~I~~~~~~~i~~-s--~i~~~~~ig~~~~i 291 (331)
|.+..||+++.|+ .+++|-+ + .||++|.|+++|++
T Consensus 71 g~~i~iG~~~~in--~~~~i~d~~~I~IGd~v~I~~~v~i 108 (183)
T PRK10092 71 GYNIFLGNNFYAN--FDCVMLDVCPIRIGDNCMLAPGVHI 108 (183)
T ss_pred cCCcEEcCCcEEC--CceEEecCceEEECCCCEECCCCEE
Confidence 3444444444444 3344322 1 45555555555554
No 202
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.81 E-value=2.9e-08 Score=69.48 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=40.0
Q ss_pred ECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccc--------eEECCCcEECcccEE-cCcEEccCeEEccCc
Q 020113 260 IGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENM--------TILGEDVHVADEVYS-NGAVVLPHKEIKSSI 324 (331)
Q Consensus 260 i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~--------~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~~ 324 (331)
||++|.|+ +++.|. +++||++|.|++++.|.+. ++|++++.|+.++.+ .++.|++++.|+++.
T Consensus 3 ig~~~~i~--~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s 75 (78)
T cd00208 3 IGEGVKIH--PKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGA 75 (78)
T ss_pred ECCCeEEC--CCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCc
Confidence 34444444 334443 3666677777777776653 677777777777777 357777777777654
No 203
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.80 E-value=4.1e-08 Score=79.12 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=18.0
Q ss_pred eEECCCcEECcccEEc-------CcEEccCeEEccCccCCc
Q 020113 295 TILGEDVHVADEVYSN-------GAVVLPHKEIKSSIVNPE 328 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~ 328 (331)
++||++|.||.++.+. +++|+.+++|.+++.+.+
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~ 154 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGA 154 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCC
Confidence 4566666666666553 444444455555554443
No 204
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.80 E-value=2.4e-08 Score=85.85 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=60.2
Q ss_pred ccCCccCCCceEecceEEcCCc-EECCCcEECCCCCceE-eCCEEcCCCEECCCcE----Eccc----eEECCCcEECcc
Q 020113 237 NSSSKLATGSNIIGNVLVHEGA-KIGDGCLIGPDKHACI-SSSIIGWHSTVGRWAR----VENM----TILGEDVHVADE 306 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~~~-~i~~~~~I~~~~~~~i-~~s~i~~~~~ig~~~~----i~~~----~~i~~~~~i~~~ 306 (331)
+..+++++|+.|.+.++|..++ .||+. .|+ ++| ++|+||++|.|++++. +.++ +.||++|.||.|
T Consensus 163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI~----g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag 237 (319)
T TIGR03535 163 RLGAHLAEGTTVMHEGFVNFNAGTLGAS-MVE----GRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN 237 (319)
T ss_pred eeccEECCCCEEcCCCEEccCceEecCc-eEE----EEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence 3455666777777777776666 56664 443 566 4788888888888888 4447 888999999999
Q ss_pred cEEcCcEEccCeEEccCcc
Q 020113 307 VYSNGAVVLPHKEIKSSIV 325 (331)
Q Consensus 307 ~~i~~~~v~~~~~i~~~~~ 325 (331)
+.| +..|+++++|+.+..
T Consensus 238 A~I-GI~IGd~~VVGAGaV 255 (319)
T TIGR03535 238 SGL-GISLGDDCVVEAGLY 255 (319)
T ss_pred CEE-CeEECCCCEECCCCE
Confidence 988 777778887777654
No 205
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.80 E-value=2e-08 Score=95.15 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=51.9
Q ss_pred cEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 258 AKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
++||++|.|+ +++.|. +++||++|.||.++.|.+ ++|++++.+++.+.+.+++|+.++.|+.++
T Consensus 317 ~~ig~~~~Ig--~~~~i~~~~~Ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~ 381 (458)
T PRK14354 317 SKVGDNVTVG--PFAHLRPGSVIGEEVKIGNFVEIKK-STIGEGTKVSHLTYIGDAEVGENVNIGCGT 381 (458)
T ss_pred CEECCCcEEC--CceEecCCCEEeCCcEECCceEEee-eEECCCCEecceeeecCcccCCceEEcCce
Confidence 4566677777 667776 788888888888888887 889999999998888888888888887664
No 206
>PLN02694 serine O-acetyltransferase
Probab=98.79 E-value=3.6e-08 Score=85.22 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=43.4
Q ss_pred cCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcE
Q 020113 238 SSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAV 313 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~ 313 (331)
....|++++.|+++++|+. +++||++|+|| ++++|. ++++|.. +..+..++ ++||++|.||.|+.| .++.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IG--dnv~I~~~VtLGg~---g~~~~~r~-piIGd~V~IGagA~Ilggi~ 232 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIG--NNVSILHHVTLGGT---GKACGDRH-PKIGDGVLIGAGATILGNVK 232 (294)
T ss_pred eeEEeCCcceecCCEEEeCCCCeEECCCcEEC--CCCEEeecceeCCc---ccccCCCc-cEECCCeEECCeeEECCCCE
Confidence 3456788888888888875 67788888887 556553 4444431 11222222 455555555555444 3344
Q ss_pred EccCeEEcc
Q 020113 314 VLPHKEIKS 322 (331)
Q Consensus 314 v~~~~~i~~ 322 (331)
|+++++|++
T Consensus 233 IGd~a~IGA 241 (294)
T PLN02694 233 IGEGAKIGA 241 (294)
T ss_pred ECCCCEECC
Confidence 444444433
No 207
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.78 E-value=2.9e-08 Score=94.49 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=35.6
Q ss_pred CCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 270 KHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 270 ~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
.++.+. +++|++++.||.++.+.+ ++|+++++|+..+.+.+++|+.++.|+.+.
T Consensus 333 ~~~~i~~~~vIg~~~~ig~~~~~~~-~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~ 387 (482)
T PRK14352 333 PFTYLRPGTVLGEEGKLGAFVETKN-ATIGRGTKVPHLTYVGDADIGEHSNIGASS 387 (482)
T ss_pred CCeEecCCcEEcCCCEECCcEEEcc-cEECCCcEEccCceecccEECCCcEECCCc
Confidence 444443 455555666665555555 777788888777777777777777777653
No 208
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.77 E-value=4.4e-08 Score=72.52 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=17.3
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
++|+++|.|+.++.+..++.|+++++|++++.+.
T Consensus 55 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 55 PTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3455555555555555545555555555555544
No 209
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.77 E-value=3.5e-08 Score=81.90 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCccCCCceEecceEEc--CCcEECCCcEECCCCCceEe----------------------------CCEEcCCCEECCC
Q 020113 239 SSKLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACIS----------------------------SSIIGWHSTVGRW 288 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i~----------------------------~s~i~~~~~ig~~ 288 (331)
...+++++.|++++.|. .++.||++|.|+ +++.|. .++||++|.||.+
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig--~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~ 142 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIA--SKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGEN 142 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEEC--CCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCC
Confidence 34566666666666665 355666666666 444443 2568888888888
Q ss_pred cEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 289 ARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 289 ~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+.|..+++||++|+||+++++.+. +.++++
T Consensus 143 ~~i~~g~~Ig~~~~Iga~s~v~~~-i~~~~~ 172 (192)
T PRK09677 143 VTILPGVSIGNGCIVGANSVVTKS-IPENTV 172 (192)
T ss_pred CEEcCCCEECCCCEECCCCEECcc-cCCCcE
Confidence 888877888888888888888764 444443
No 210
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.77 E-value=6.1e-09 Score=89.74 Aligned_cols=94 Identities=36% Similarity=0.616 Sum_probs=79.8
Q ss_pred cCCccCCCceEecceEEcCCcEECCCcEECCC---------CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccE
Q 020113 238 SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPD---------KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVY 308 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~---------~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~ 308 (331)
+.+.++++|.|+++++||++++|++++.|... ..+.|..+++|.++.||.+++|.++++||+||+|.+.-.
T Consensus 269 ~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~ 348 (371)
T KOG1322|consen 269 SIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDY 348 (371)
T ss_pred cccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccc
Confidence 45567888888888888888888887766533 566667789999999999999999999999999999999
Q ss_pred EcCcEEccCeEEccCccCCcccC
Q 020113 309 SNGAVVLPHKEIKSSIVNPEIVM 331 (331)
Q Consensus 309 i~~~~v~~~~~i~~~~~~~~~~~ 331 (331)
++...+-+...+...+..+.++|
T Consensus 349 vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 349 VNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred cccceeEEeccceeecccccccC
Confidence 99888888888888888888776
No 211
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.76 E-value=7.6e-07 Score=72.90 Aligned_cols=186 Identities=15% Similarity=0.258 Sum_probs=114.5
Q ss_pred CeEEEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcC-CCEEEEEeccCh--HHHHHHHHHhhhccCeEEEE
Q 020113 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITC 77 (331)
Q Consensus 1 m~avIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~~~~~v~~ 77 (331)
|-++|+.|-+||.-.| -|.|+|++++|||.++|+.+.++. ++++++.++.+. ..++.++.+. |..+
T Consensus 3 ~I~~IiQARmgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~v-- 71 (241)
T COG1861 3 MILVIIQARMGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYV-- 71 (241)
T ss_pred cEEEEeeecccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeE--
Confidence 3467777776644334 499999999999999999999986 788988887543 5677777662 3333
Q ss_pred eeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCeec-cc-cHHHHHHHHhhcCCceEEEecCCCCceEEEEcCCcCcee
Q 020113 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHRGRGGEASIMVDEPSKYGVVVMEETTGKVE 155 (331)
Q Consensus 78 ~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~-~~-~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~d~~~~~v~ 155 (331)
.......-.+.+..+.+....+ .++=+.||.-+ .. -++.+++.|.+++++-+-. . +.
T Consensus 72 -frGs~~dVL~Rf~~a~~a~~~~---~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~------------~---~~-- 130 (241)
T COG1861 72 -FRGSEEDVLQRFIIAIKAYSAD---VVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSN------------T---GA-- 130 (241)
T ss_pred -ecCCHHHHHHHHHHHHHhcCCC---eEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccc------------c---CC--
Confidence 2223333445566666666553 66679999943 33 3788999999888742111 0 11
Q ss_pred EeeecCCCCCCCeEEEEEEEEChhhHhhcccC-CCCc-ccchHHHHHhcCcEEEEEe---------CceEEecCCHHHHH
Q 020113 156 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-PTSI-EKEVFPEIAAENKLFAMVL---------PGFWMDIGQPKDYI 224 (331)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~-~~~~l~~l~~~~~i~~~~~---------~~~~~~i~t~~d~~ 224 (331)
...++.-+++...|+..... .... ....-+++-.+.+++...+ +++-..++|.+||-
T Consensus 131 ------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD~~ 198 (241)
T COG1861 131 ------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQEDFA 198 (241)
T ss_pred ------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHHHH
Confidence 22355667777777655221 1111 1122233333333332221 44667899999998
Q ss_pred HHHHHH
Q 020113 225 TGLRLY 230 (331)
Q Consensus 225 ~a~~~~ 230 (331)
.++..+
T Consensus 199 ~~~~vy 204 (241)
T COG1861 199 LAKAVY 204 (241)
T ss_pred HHHHHH
Confidence 886654
No 212
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.75 E-value=5.5e-08 Score=75.24 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=47.4
Q ss_pred CccCCCceEecceEEc----CCcEECCCcEECCCCCceEe-----C----CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 240 SKLATGSNIIGNVLVH----EGAKIGDGCLIGPDKHACIS-----S----SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 240 ~~i~~~~~i~~~~~i~----~~~~i~~~~~I~~~~~~~i~-----~----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
+.+..++.|+.++.|. .++.|+++|.|+ +++.|. + ..||++|+||.++.| + ..||++++||+|
T Consensus 26 avV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG--~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-g-v~IG~~~vIGaG 101 (147)
T cd04649 26 GFVNFNAGTLGNCMVEGRISSGVIVGKGSDVG--GGASIMGTLSGGGNNVISIGKRCLLGANSGI-G-ISLGDNCIVEAG 101 (147)
T ss_pred CEEccCCEECCCeEECCcccCCEEECCCCEEC--CCCEEEEECCCCcccCEEECCCCEECCCCEE-e-EEECCCCEECCC
Confidence 3455566666666665 667777777777 556553 2 578888888888888 4 888888888888
Q ss_pred cEEc
Q 020113 307 VYSN 310 (331)
Q Consensus 307 ~~i~ 310 (331)
+++.
T Consensus 102 svV~ 105 (147)
T cd04649 102 LYVT 105 (147)
T ss_pred CEEe
Confidence 8774
No 213
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.74 E-value=1.1e-07 Score=77.42 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=49.7
Q ss_pred ccCCCceEecceEE--cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEc------------------cceEE
Q 020113 241 KLATGSNIIGNVLV--HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVE------------------NMTIL 297 (331)
Q Consensus 241 ~i~~~~~i~~~~~i--~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~------------------~~~~i 297 (331)
.+++++.|.+++.+ +.++.||++|.|+ .+++|. +.+||++|.|+++|+|. ..++|
T Consensus 44 ~~~~~~~i~~~~~~~~~~~i~IG~~v~I~--~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~I 121 (169)
T cd03357 44 SVGENVYIEPPFHCDYGYNIHIGDNFYAN--FNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITI 121 (169)
T ss_pred ccCCCCEEcCCEEEEeCCcCEECCCceEc--CCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEe
Confidence 35666777666543 4567777777777 556663 35677777777777773 23566
Q ss_pred CCCcEECcccEE-cCcEEccCeEEccC
Q 020113 298 GEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 298 ~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
|++|.||.++.| .++.|+++++|+.+
T Consensus 122 G~~~~Ig~~a~I~~gv~Ig~~~~Vgag 148 (169)
T cd03357 122 GDNVWIGGGVIILPGVTIGDNSVIGAG 148 (169)
T ss_pred CCCEEECCCCEEeCCCEECCCCEECCC
Confidence 666666666665 34455555444443
No 214
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.73 E-value=6.1e-08 Score=79.51 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=45.2
Q ss_pred cCCCceEecceEEcCCc--EECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECCC
Q 020113 242 LATGSNIIGNVLVHEGA--KIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGED 300 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~--~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~~ 300 (331)
++++++|..+++|++.+ .||++|.|+ .++.+. ...||++|+||.+|.|..++.||++
T Consensus 76 iG~~~~in~~~~i~d~~~I~IGd~v~I~--~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~ 153 (183)
T PRK10092 76 LGNNFYANFDCVMLDVCPIRIGDNCMLA--PGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDN 153 (183)
T ss_pred EcCCcEECCceEEecCceEEECCCCEEC--CCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCC
Confidence 44444454445444433 566666776 445552 3567888888888888777888888
Q ss_pred cEECcccEEcCc
Q 020113 301 VHVADEVYSNGA 312 (331)
Q Consensus 301 ~~i~~~~~i~~~ 312 (331)
++|+.++++.+.
T Consensus 154 ~vIgagsvV~~d 165 (183)
T PRK10092 154 VVVASGAVVTKD 165 (183)
T ss_pred CEECCCCEEccc
Confidence 888888877654
No 215
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.73 E-value=2.7e-08 Score=92.97 Aligned_cols=68 Identities=13% Similarity=0.211 Sum_probs=60.9
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
...|+++|.| +++.|. +|+|+++|.|+ ++|.|++|+|+++|.||++|+|.+ |+|+++|.|++++.|..
T Consensus 327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~--~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~~ 394 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-RSVLFSRVRVN--SFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIGE 394 (425)
T ss_pred eCEEcCCcEE-cCcccc-CCEECCCCEEC--CCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEECC
Confidence 3567888888 677776 79999999999 899999999999999999999998 99999999999988863
No 216
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.72 E-value=1.1e-07 Score=70.47 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=38.3
Q ss_pred cCCCceEecceEEcC--CcEECCCcEECCCCCceEeCCEEcCCCEECCCcE---EccceEECCCcEECcccEEc-CcEEc
Q 020113 242 LATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWAR---VENMTILGEDVHVADEVYSN-GAVVL 315 (331)
Q Consensus 242 i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~---i~~~~~i~~~~~i~~~~~i~-~~~v~ 315 (331)
+++++.|+++++|+. +++|++++.|+ + ++.|++++.|+.++. +.. ++|++++.|+.++.+. ++.|+
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig--~-----~~~i~~~~~i~~~~~~~~~~~-~~Ig~~~~Ig~~~~i~~~~~Ig 76 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIG--D-----NCTIYQGVTLGGKGKGGGKRH-PTIGDNVVIGAGAKILGNITIG 76 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEEC--C-----CCEEcCCCEECCCccCCcCCC-CEECCCcEEcCCCEEECcCEEC
Confidence 455555555555544 34455555555 3 344455555555553 333 5666666666666553 24455
Q ss_pred cCeEEccC
Q 020113 316 PHKEIKSS 323 (331)
Q Consensus 316 ~~~~i~~~ 323 (331)
++++|+++
T Consensus 77 ~~~~i~~~ 84 (101)
T cd03354 77 DNVKIGAN 84 (101)
T ss_pred CCCEECCC
Confidence 44444433
No 217
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.72 E-value=4.8e-08 Score=91.72 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=53.6
Q ss_pred CceEecceEEcCCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 245 GSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 245 ~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
+.++.+++.|..++.||++|.|+ .++.|.+|+|+++|.|+. +.+.+ |+||++++|++++.|.+|.|+++++|+.++
T Consensus 253 ~~~~~~~~~i~g~~~ig~~~~I~--~~~~i~~~~i~~~~~I~~-~~i~~-~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~ 328 (430)
T PRK14359 253 TIYIESGVEFEGECELEEGVRIL--GKSKIENSHIKAHSVIEE-SIIEN-SDVGPLAHIRPKSEIKNTHIGNFVETKNAK 328 (430)
T ss_pred eeEECCCcEEcCceEECCCCEEC--CCeEEEeeEECCCCEEec-cEEeC-CEECCCCEECCCcEEeccEEcCcEEEcccE
Confidence 45566777777777777777777 667777777777777765 55555 777777777777777777777777665544
No 218
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.71 E-value=4.2e-08 Score=89.94 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=54.5
Q ss_pred ceEecceEEcC----CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 246 SNIIGNVLVHE----GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 246 ~~i~~~~~i~~----~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+.|+++|.|++ +++|+++|.|+ ++|.|.+|+|++++.||++|+|.+ |+||++++|+.++.|.+
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~--~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIG--SGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEEC--CCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence 44555555555 89999999999 889999999999999999999988 99999999999998754
No 219
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.71 E-value=3.7e-08 Score=90.58 Aligned_cols=71 Identities=27% Similarity=0.383 Sum_probs=59.9
Q ss_pred ceEecceEEc---CCcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeE
Q 020113 246 SNIIGNVLVH---EGAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKE 319 (331)
Q Consensus 246 ~~i~~~~~i~---~~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 319 (331)
+.|+++|.|+ .+|+|+++|.|+ ++|.|++|+++++|.|+.++++.+ |+|+++++|++++.+.+..+.|.++
T Consensus 290 ~~Ig~~~~i~~~v~~s~i~~~~~I~--~~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~~~~ 363 (369)
T TIGR02092 290 SLVANGCIIEGKVENSILSRGVHVG--KDALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQPLVI 363 (369)
T ss_pred eEEcCCCEEeeEEeCCEECCCCEEC--CCCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCccEEE
Confidence 3444555554 367889999999 899999999999999999999999 9999999999999998876666554
No 220
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.71 E-value=4.2e-08 Score=92.69 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred cCCCceEecceEEcCCcEECCCcEEC
Q 020113 242 LATGSNIIGNVLVHEGAKIGDGCLIG 267 (331)
Q Consensus 242 i~~~~~i~~~~~i~~~~~i~~~~~I~ 267 (331)
+++++.|++++.|+++++||++|.|+
T Consensus 316 ig~~~~I~~~~~I~~~~~Ig~~~~Ig 341 (450)
T PRK14360 316 IGDGVKIGPYAHLRPEAQIGSNCRIG 341 (450)
T ss_pred ccCCcEECCCCEECCCCEEeCceEEC
Confidence 44455555555555555555555555
No 221
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.70 E-value=4.5e-08 Score=92.41 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 270 KHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 270 ~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
+++.|. +++||++|.||+++.+.+ ++|++++.+++.+.+.+++|+.++.|++++
T Consensus 317 ~~~~i~~~~~ig~~~~Ig~~~~i~~-~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~ 371 (448)
T PRK14357 317 PFSRLREGTVLKKSVKIGNFVEIKK-STIGENTKAQHLTYLGDATVGKNVNIGAGT 371 (448)
T ss_pred CCcEECCcccccCCcEecCceeeec-cEEcCCcCccccccccCcEECCCcEECCCc
Confidence 444553 466666666676666665 677777766666666667777777776654
No 222
>PLN02739 serine acetyltransferase
Probab=98.70 E-value=7.8e-08 Score=84.82 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccCCccCCCceEecceEEc--CCcEECCCcEECCCCCceE-eCCEEc
Q 020113 237 NSSSKLATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI-SSSIIG 280 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i-~~s~i~ 280 (331)
.....|++++.|+++++|+ .+++||++|+|| +++.| .+++||
T Consensus 203 ~~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIG--dnv~I~~gVTIG 247 (355)
T PLN02739 203 VFGIDIHPAARIGKGILLDHGTGVVIGETAVIG--DRVSILHGVTLG 247 (355)
T ss_pred HhCcccCCCccccCceEEecCCceEECCCCEEC--CCCEEcCCceeC
Confidence 4456678888888888885 377777777777 55555 244443
No 223
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=1.5e-07 Score=75.71 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=48.0
Q ss_pred ccCCccCCCceEe--cceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECc
Q 020113 237 NSSSKLATGSNII--GNVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVAD 305 (331)
Q Consensus 237 ~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 305 (331)
.+.++|+++.+|. .+++||+.++||++|.|- .+++|- .=.||+|+.||.++.|-++-.||+|+.||+
T Consensus 71 hp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~--~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA 148 (194)
T COG1045 71 HPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIY--HGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGA 148 (194)
T ss_pred CCCCeECCceEEcCCceEEEcceeEECCCeEEE--cceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECC
Confidence 4444455544443 245555555555555555 344442 236888888888888888788899999999
Q ss_pred ccEEcCc
Q 020113 306 EVYSNGA 312 (331)
Q Consensus 306 ~~~i~~~ 312 (331)
|+++.+.
T Consensus 149 ~sVVlkd 155 (194)
T COG1045 149 GSVVLKD 155 (194)
T ss_pred CceEccC
Confidence 9888653
No 224
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.65 E-value=7.7e-08 Score=90.06 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=59.4
Q ss_pred CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECC-------------------CcEECcccEEcCcEEccC
Q 020113 257 GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGE-------------------DVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 257 ~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~-------------------~~~i~~~~~i~~~~v~~~ 317 (331)
++.||++|.| +++.|++|+||++|.||++|.|.+ |+|++ ++.||++|.|.+|+|+++
T Consensus 308 ~~~ig~~~~i---~~~~i~~svi~~~~~Ig~~~~i~~-svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 383 (429)
T PRK02862 308 ESIIAEGCII---KNCSIHHSVLGIRSRIESGCTIED-TLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN 383 (429)
T ss_pred eCEECCCCEE---CCcEEEEEEEeCCcEECCCCEEEe-eEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC
Confidence 5788888888 348888999999999999999999 99976 699999999999999999
Q ss_pred eEEccCccCC
Q 020113 318 KEIKSSIVNP 327 (331)
Q Consensus 318 ~~i~~~~~~~ 327 (331)
+.|++++...
T Consensus 384 ~~i~~~~~~~ 393 (429)
T PRK02862 384 ARIGNNVRIV 393 (429)
T ss_pred cEECCCcEEe
Confidence 9999887653
No 225
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.64 E-value=1.6e-07 Score=78.13 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred ccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-------------------CCEEcCCCEECCCcEEccceEECC
Q 020113 241 KLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-------------------SSIIGWHSTVGRWARVENMTILGE 299 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-------------------~s~i~~~~~ig~~~~i~~~~~i~~ 299 (331)
.|+++++|..++.|.+ ++.||++|.|+ +++.|. ..+||++|+||.++.|..++.||+
T Consensus 77 ~IG~~v~In~~~~I~d~~~I~IGd~v~Ig--~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~ 154 (203)
T PRK09527 77 HIGRNFYANFNLTIVDDYTVTIGDNVLIA--PNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_pred EEcCCcEECCCcEEecCCCEEECCCCEEC--CCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence 3555555555554422 35667777777 445553 267999999999999998899999
Q ss_pred CcEECcccEEcCc
Q 020113 300 DVHVADEVYSNGA 312 (331)
Q Consensus 300 ~~~i~~~~~i~~~ 312 (331)
++.||.++++.+.
T Consensus 155 ~~vIgagsvV~kd 167 (203)
T PRK09527 155 NSVIGAGSVVTKD 167 (203)
T ss_pred CCEECCCCEEccc
Confidence 9999999998653
No 226
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.64 E-value=6.1e-07 Score=73.69 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCCCCceeCC--cchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 21 VPKPLVDFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 21 ~pK~llpi~g--~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
.+|+|+++.| +|||+|+++.+.. .+++++|+++.... +.. .+..+. .......|...++..++....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-----~~~----~~~~~i-~d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-----LPE----LPAPVL-RDELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-----ccc----CCCCEe-ccCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 9999999998775 48999999875421 111 122332 223334577777776665432
Q ss_pred CCCCCcEEEEeCCe--eccccHHHHHHHHhh
Q 020113 99 DDSGEPFFVLNSDV--ISEYPLKQMIEFHRG 127 (331)
Q Consensus 99 ~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~ 127 (331)
....+.++|++||+ +....+..+++.+.+
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 11223899999999 334457788876543
No 227
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.62 E-value=2.2e-07 Score=77.08 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred cCCCceEecceEE----cCCcEECCCcEECCCCCceEe---CCEEcCCCEECCCcEEcc---------------------
Q 020113 242 LATGSNIIGNVLV----HEGAKIGDGCLIGPDKHACIS---SSIIGWHSTVGRWARVEN--------------------- 293 (331)
Q Consensus 242 i~~~~~i~~~~~i----~~~~~i~~~~~I~~~~~~~i~---~s~i~~~~~ig~~~~i~~--------------------- 293 (331)
+++++.+..++.+ .....||++|.|+ .++.|. +++||++|.|++++.|.+
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig--~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~ 123 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVN--DYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM 123 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEEC--CCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence 4555555555555 2355666666666 555553 467888888887777753
Q ss_pred ------ceEECCCcEECcccEEc-CcEEccCeEEccCc
Q 020113 294 ------MTILGEDVHVADEVYSN-GAVVLPHKEIKSSI 324 (331)
Q Consensus 294 ------~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~ 324 (331)
.++||++|.||.++.+. ++.|+++++|+++.
T Consensus 124 ~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 124 RTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANS 161 (192)
T ss_pred cccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCC
Confidence 14677777777777663 55566555555544
No 228
>PRK10502 putative acyl transferase; Provisional
Probab=98.62 E-value=1.5e-07 Score=77.43 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=44.7
Q ss_pred cCCCceEecceEEc--CCcEECCCcEECCCCCceE----------------eCCEEcCCCEECCCcEEccceEECCCcEE
Q 020113 242 LATGSNIIGNVLVH--EGAKIGDGCLIGPDKHACI----------------SSSIIGWHSTVGRWARVENMTILGEDVHV 303 (331)
Q Consensus 242 i~~~~~i~~~~~i~--~~~~i~~~~~I~~~~~~~i----------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i 303 (331)
|++++.|++++.|. .++.||++|.|+ .++.| ...+||++|.||.++.|..++.||+++.|
T Consensus 74 IG~~~~Ig~~~~I~~~~~v~IG~~~~I~--~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 74 IGDYAWIGDDVWLYNLGEITIGAHCVIS--QKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred ECCCeEECCCceecccCceEECCCcEEC--CCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 45555555555443 234555555555 44444 12478888888888888777888888888
Q ss_pred CcccEEcC
Q 020113 304 ADEVYSNG 311 (331)
Q Consensus 304 ~~~~~i~~ 311 (331)
++++++.+
T Consensus 152 ga~svV~~ 159 (182)
T PRK10502 152 GARSSVFK 159 (182)
T ss_pred CCCCEEec
Confidence 88888764
No 229
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.60 E-value=1e-07 Score=80.29 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=16.4
Q ss_pred eEECCCcEECcccE-EcCcEEccCeEEccCc
Q 020113 295 TILGEDVHVADEVY-SNGAVVLPHKEIKSSI 324 (331)
Q Consensus 295 ~~i~~~~~i~~~~~-i~~~~v~~~~~i~~~~ 324 (331)
++|++||.||.+++ +.++.++++++|..++
T Consensus 183 v~IgdncliGAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 183 VIIGDNCLIGANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred eEECCccEeccccceEeeeEeCCCcEEecce
Confidence 55666666666653 3455555555554443
No 230
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.59 E-value=2e-07 Score=87.55 Aligned_cols=63 Identities=19% Similarity=0.437 Sum_probs=39.8
Q ss_pred cEECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECC----------------C---cEECcccEEcCcEEccCe
Q 020113 258 AKIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGE----------------D---VHVADEVYSNGAVVLPHK 318 (331)
Q Consensus 258 ~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~----------------~---~~i~~~~~i~~~~v~~~~ 318 (331)
|+|+++|.|+ ++.|++|+|+++|.||++|.|.+ |++++ + ++||+++.+.+++|++++
T Consensus 316 s~I~~~~~I~---~~~I~~svI~~~~~Ig~~~~I~~-sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v 391 (436)
T PLN02241 316 SIISHGCFLR---ECKIEHSVVGLRSRIGEGVEIED-TVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNA 391 (436)
T ss_pred eEEcCCcEEc---CeEEEeeEEcCCCEECCCCEEEE-eEEECCCccccccccccccccCCcceEECCCCEEcceEecCCC
Confidence 5566666664 26666677777777777777777 44433 2 267777776666666666
Q ss_pred EEccCc
Q 020113 319 EIKSSI 324 (331)
Q Consensus 319 ~i~~~~ 324 (331)
.|++++
T Consensus 392 ~Ig~~~ 397 (436)
T PLN02241 392 RIGKNV 397 (436)
T ss_pred EECCCc
Confidence 666554
No 231
>PLN02357 serine acetyltransferase
Probab=98.59 E-value=3.2e-07 Score=81.66 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=42.1
Q ss_pred cCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEE-cCcE
Q 020113 238 SSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS-NGAV 313 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~ 313 (331)
....|++++.|+.+++|.. +++||++|+|| ++++|. +++||.. |.....+ +++||++|.||.|+.| .+..
T Consensus 225 f~vdI~p~a~IG~Gv~Idh~~giVIGe~avIG--dnV~I~~gVtIGg~---g~~~g~~-~piIGd~V~IGagA~IlggV~ 298 (360)
T PLN02357 225 FAVDIHPGAKIGQGILLDHATGVVIGETAVVG--NNVSILHNVTLGGT---GKQSGDR-HPKIGDGVLIGAGTCILGNIT 298 (360)
T ss_pred hceeeCCCCEECCCeEECCCCceEECCCCEEC--CCCEEeCCceecCc---cccCCcc-CceeCCCeEECCceEEECCeE
Confidence 3456777777777777764 56777777777 445553 3444332 0001111 2555555555555554 3444
Q ss_pred EccCeEEccC
Q 020113 314 VLPHKEIKSS 323 (331)
Q Consensus 314 v~~~~~i~~~ 323 (331)
||++++|+.+
T Consensus 299 IGdga~IGAg 308 (360)
T PLN02357 299 IGEGAKIGAG 308 (360)
T ss_pred ECCCCEECCC
Confidence 5555555443
No 232
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.58 E-value=6.4e-08 Score=72.98 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=47.3
Q ss_pred EECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 259 KIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
.||+.+.|+ ++|++....||..+.+|.++.|+++|+|-++|.|.+++++. .+.+.|..+++.+
T Consensus 86 hiGdhVFie--E~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 86 HIGDHVFIE--EECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eecceEEEe--cceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCC
Confidence 344444444 77777777788888888888888888888888888888884 6777777777643
No 233
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.55 E-value=2.4e-07 Score=84.63 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=37.9
Q ss_pred ceEeCCEEcCCCEECCC-cEEccceEECCCcEECcccEEc---CcEEccCeEEc
Q 020113 272 ACISSSIIGWHSTVGRW-ARVENMTILGEDVHVADEVYSN---GAVVLPHKEIK 321 (331)
Q Consensus 272 ~~i~~s~i~~~~~ig~~-~~i~~~~~i~~~~~i~~~~~i~---~~~v~~~~~i~ 321 (331)
|.|.+|+|+++|.|+.+ +.+.+ +++++++.|++++.+. +.++|.+++|+
T Consensus 300 ~~i~~s~i~~~~~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 300 AEVEHSIVLDESVIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred eEEEeeEEcCCCEEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCceec
Confidence 44557888888888877 47776 9999999999998886 36777777764
No 234
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.53 E-value=5e-07 Score=71.28 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEE
Q 020113 276 SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEI 320 (331)
Q Consensus 276 ~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 320 (331)
+++||++|.||.+|.|..++.||++|+||++++|... +.+++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc-cCCCeEE
Confidence 5889999999999999877999999999999988754 3444443
No 235
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.51 E-value=8.3e-07 Score=66.35 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=14.9
Q ss_pred eEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
+.||++|.|+.++.+. ++.|+++++|+++
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~g 86 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGAR 86 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 5566666666655552 4444444444433
No 236
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.48 E-value=7.7e-07 Score=77.14 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=20.9
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.||++|.||.++.| + ..||++|+||.|++|.
T Consensus 251 V~IGe~~lIGagA~I-G-I~IGd~~iIGAGavVt 282 (341)
T TIGR03536 251 ISVGEGCLLGANAGI-G-IPLGDRCTVEAGLYIT 282 (341)
T ss_pred EEECCCcEECCCCEE-e-eEECCCCEECCCCEEe
Confidence 456666666666666 3 6666777777766663
No 237
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.45 E-value=1.1e-06 Score=65.79 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=16.2
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.|++++.+ .++.|++++.++++
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 556666666666655 35555555555443
No 238
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.38 E-value=1.6e-05 Score=69.94 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=110.4
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+|+||||.|+||+- ..||.++|+ .|+++++..++++... | +--++..+....+++.++++++... +..+
T Consensus 6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~-~~~v 81 (300)
T cd00897 6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGV-NVDI 81 (300)
T ss_pred EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCC-ccCe
Confidence 68889999999976 789999999 4779999999988652 3 4445555555668899999884311 1111
Q ss_pred EEee------------------------CCcccCChHHHHH-----HHhhccCCCCCcEEEEeCCeeccccHHHHHHHHh
Q 020113 76 TCSQ------------------------ETEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (331)
Q Consensus 76 ~~~~------------------------~~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 126 (331)
.+.. ...|.|.++-... .++.+....-+++.+.+.|.+...-=..++..+.
T Consensus 82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~ 161 (300)
T cd00897 82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV 161 (300)
T ss_pred EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence 1111 1124455443221 1223322223399999999965433346778888
Q ss_pred hcCCceEEE-e---cCCCCceEEEE-cCCcCceeEeeecCCCC--------CCCeEEEEEEEEChhhHhhc
Q 020113 127 GRGGEASIM-V---DEPSKYGVVVM-EETTGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 127 ~~~~~~~i~-~---~~~~~~~~v~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l 184 (331)
++++++++- + ...++-|.+.. +.. -++.++.|-|.+. .-.+.+++...|+-+.++.+
T Consensus 162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 162 DNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred hcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 888888775 2 22234454444 432 3466776655421 22477888889998877654
No 239
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.3e-06 Score=73.72 Aligned_cols=70 Identities=27% Similarity=0.369 Sum_probs=50.5
Q ss_pred CCccCCCceEecceEEcCCcEECCCcEECCCCCceE----e-----CCEEcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 239 SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACI----S-----SSIIGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 239 ~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i----~-----~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
.+.++.+++|..++.+|..+.||+||-|| .++.| + -.+|++||.||.|+.+..++.+|++|.|+.|++|
T Consensus 138 gA~~~~gtMVd~~as~G~~a~VGkn~hig--gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I 215 (271)
T COG2171 138 GAGTGEGTMVDGRASVGSCAQVGKNSHIG--GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFI 215 (271)
T ss_pred CcccCcceEEeeeeeeeccEEECCCcccC--CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEE
Confidence 44567777777666666556666666665 44444 3 2679999999999866666999999999999888
Q ss_pred c
Q 020113 310 N 310 (331)
Q Consensus 310 ~ 310 (331)
.
T Consensus 216 ~ 216 (271)
T COG2171 216 T 216 (271)
T ss_pred e
Confidence 5
No 240
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.30 E-value=3.3e-06 Score=72.88 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=40.0
Q ss_pred eEEcCCcEECCCcEECCCCCce----Ee-C----CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 252 VLVHEGAKIGDGCLIGPDKHAC----IS-S----SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 252 ~~i~~~~~i~~~~~I~~~~~~~----i~-~----s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
+.|+.+|+||++|.|+ .++. +. + ..||++|.||.+|.| + ..||++|+||.|+++.
T Consensus 194 g~I~HdvvIGd~~~Ig--pGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-G-I~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 194 GRISAGVVVGDGSDIG--GGASIMGTLSGGGKEVISIGERCLLGANSGL-G-ISLGDDCVVEAGLYVT 257 (319)
T ss_pred EEEccCCEECCCCEEC--CCceecceecCCCcccEEECCCcEECCCCEE-C-eEECCCCEECCCCEEe
Confidence 5566677777777777 5566 32 2 678888888888888 4 7888888888888774
No 241
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.26 E-value=8.6e-06 Score=65.75 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred ccCCccCCCceEecceEEcC--CcEECCCcEECCCCCceEeCCEEcCCCEECCCcEE--ccceEECCCcEECcccEE-cC
Q 020113 237 NSSSKLATGSNIIGNVLVHE--GAKIGDGCLIGPDKHACISSSIIGWHSTVGRWARV--ENMTILGEDVHVADEVYS-NG 311 (331)
Q Consensus 237 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i--~~~~~i~~~~~i~~~~~i-~~ 311 (331)
.....|++++.|+++.+|+- +.+||+.++|| ++++| -++++||..-.= ..+-.||++|+||+|+.| .+
T Consensus 65 ~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IG--ddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~ 137 (194)
T COG1045 65 LFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIG--DDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN 137 (194)
T ss_pred hcceeeCCCCeECCceEEcCCceEEEcceeEEC--CCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc
Confidence 34456777777777777763 34555555555 33333 222222211110 113577777777777766 34
Q ss_pred cEEccCeEEcc
Q 020113 312 AVVLPHKEIKS 322 (331)
Q Consensus 312 ~~v~~~~~i~~ 322 (331)
-.|++|+.||+
T Consensus 138 I~IGd~akIGA 148 (194)
T COG1045 138 IEIGDNAKIGA 148 (194)
T ss_pred eEECCCCEECC
Confidence 44444444443
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.17 E-value=6.8e-06 Score=81.16 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=47.2
Q ss_pred cCCccCCCceEecceEEcCC-cEECCCcEECCCCCceE------------eCCEEcCCCEECCCcEEccceEECCCcEEC
Q 020113 238 SSSKLATGSNIIGNVLVHEG-AKIGDGCLIGPDKHACI------------SSSIIGWHSTVGRWARVENMTILGEDVHVA 304 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~i~~~-~~i~~~~~I~~~~~~~i------------~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~ 304 (331)
..++|++++.|.+...++.+ +.||++|.|+ +++.| .+++||++|.||.+|.|..++.||++++||
T Consensus 596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~--~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig 673 (695)
T TIGR02353 596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLN--EGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLG 673 (695)
T ss_pred CCCEECCCeEECCeeccCCCCeEECCCCEEC--CCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEEC
Confidence 44567777777664333222 3555555555 44544 246677777777777776667777777777
Q ss_pred cccEEc-CcEEccCe
Q 020113 305 DEVYSN-GAVVLPHK 318 (331)
Q Consensus 305 ~~~~i~-~~~v~~~~ 318 (331)
.++.+. +..+.+++
T Consensus 674 ~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 674 PDSLVMKGEEVPAHT 688 (695)
T ss_pred CCCEEcCCcccCCCC
Confidence 776664 33444443
No 243
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.15 E-value=2.2e-06 Score=50.33 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred CEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 277 SIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 277 s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
++|+++|+|++++.|.+++.|++++.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4455555555555555555555555555555553
No 244
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.08 E-value=8.2e-06 Score=66.79 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred ceEEcCCcEECCCcEECCCCCceEe---------CCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 251 NVLVHEGAKIGDGCLIGPDKHACIS---------SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 251 ~~~i~~~~~i~~~~~I~~~~~~~i~---------~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
+++||+.++||++|.|. ++..+. .-.||+||.||.+++|-++..||++++|++|+++..
T Consensus 168 gvvigeTAvvg~~vSil--H~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSIL--HPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred ceeecceeEeccceeee--cceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 45566666666666665 333332 247999999999999999999999999999999853
No 245
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.07 E-value=3.8e-05 Score=71.30 Aligned_cols=77 Identities=18% Similarity=0.389 Sum_probs=49.2
Q ss_pred cEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCcC---------ceeEeeecCCCC-----
Q 020113 104 PFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETTG---------KVEKFVEKPKNF----- 164 (331)
Q Consensus 104 ~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~~---------~v~~~~ek~~~~----- 164 (331)
-++|+.+|+++...-...+ .+.+ ++++++ .+-.++.|++..|++ + .+..+..||...
T Consensus 55 Gv~V~s~D~vl~~~~~~~~-~~~~--~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLI-DWDE--PGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccC-CCCC--CCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence 7899999954332212222 2333 444444 333578899999988 6 678888887521
Q ss_pred ------CCCeEEEEEEEEChhhHhhc
Q 020113 165 ------VGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 165 ------~~~~~~~Giy~~~~~~l~~l 184 (331)
..-..++|++.|+.+..+.+
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHH
Confidence 12366899999998876654
No 246
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=98.01 E-value=0.00024 Score=59.13 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=61.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~ 109 (331)
-+|||+|+++.+...++++++++++. +++.++... +++.+ +.+.. .|...++..+++.+.... +.+++++
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~--i~~~~-~G~~~si~~al~~~~~~~-~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPV--LRDPG-PGLNNALNAALAEAREPG-GAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEE--EecCC-CCHHHHHHHHHHHhhccC-CeEEEEe
Confidence 57999999999999887888888763 334444333 23433 33333 389999999998875432 2799999
Q ss_pred CCe--eccccHHHHHHHHh
Q 020113 110 SDV--ISEYPLKQMIEFHR 126 (331)
Q Consensus 110 ~D~--i~~~~l~~~l~~~~ 126 (331)
||+ +....++++++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 999 45566888888664
No 247
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.00 E-value=0.0003 Score=70.91 Aligned_cols=198 Identities=12% Similarity=0.123 Sum_probs=112.6
Q ss_pred cEEEEeCCeeccccHHHHHHHHhhcCCceEEE-----ecCCCCceEEEEcCCc-CceeEeeecCCC--------CCCCeE
Q 020113 104 PFFVLNSDVISEYPLKQMIEFHRGRGGEASIM-----VDEPSKYGVVVMEETT-GKVEKFVEKPKN--------FVGNKI 169 (331)
Q Consensus 104 ~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~-----~~~~~~~~~v~~d~~~-~~v~~~~ek~~~--------~~~~~~ 169 (331)
.++|..||.+... ++.+... ..++++.+ .+-.++.|++..|.++ +++..+..||.. ...-+.
T Consensus 154 g~li~~gDv~~~f--~~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~ 229 (974)
T PRK13412 154 HTLIASGDVYIRS--EQPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM 229 (974)
T ss_pred ceEEEecchhhhc--cccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence 5788888874322 1111111 12333333 2334678888887652 457777788752 123488
Q ss_pred EEEEEEEChhhHhhcc-c-----CCCCcccc----hHHHHHhc----------CcEEEEEe-CceEEecCCHHHHHHHHH
Q 020113 170 NAGIYLLNPSVLDRIE-L-----KPTSIEKE----VFPEIAAE----------NKLFAMVL-PGFWMDIGQPKDYITGLR 228 (331)
Q Consensus 170 ~~Giy~~~~~~l~~l~-~-----~~~~~~~~----~l~~l~~~----------~~i~~~~~-~~~~~~i~t~~d~~~a~~ 228 (331)
++|+|+|+.+..+.|. . ....-+++ |+..|-.+ -++...+. ++.|+.++|-.+|+....
T Consensus 230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence 9999999998877551 1 11111223 33322111 12333443 457999999999996544
Q ss_pred HHHhhh--cccc-CCccCCCceEecceEEcCCcEECCCcEECCCCCce-EeCCEEcCCCEECCCcEEccceE-ECCCcEE
Q 020113 229 LYLDFL--QKNS-SSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHAC-ISSSIIGWHSTVGRWARVENMTI-LGEDVHV 303 (331)
Q Consensus 229 ~~l~~~--~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~-i~~s~i~~~~~ig~~~~i~~~~~-i~~~~~i 303 (331)
.+.+.. ++.. ..++.+ .+.+++ .|++++.++.++ +++. |++|.|+.+..||.+|.|.+ +- ..-+.+|
T Consensus 310 ~~q~~~~~~~~i~~~~~~~----~~~~~v-~ns~~~~~~s~~--~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~v 381 (974)
T PRK13412 310 AVQNLVTDQRRIMHRKVKP----HPAMFV-QNAVLSGKLTAE--NATLWIENSHVGEGWKLASRSIITG-VPENSWNLDL 381 (974)
T ss_pred hHHHHhhhhhhhhccccCC----CCceEE-EeeEecCCcccC--CCeEEEEeeEecCCeEEcCCcEEec-ccccccceec
Confidence 433332 1110 011111 112222 488888889898 6655 78899999999999999988 53 2234677
Q ss_pred CcccEEcCcE
Q 020113 304 ADEVYSNGAV 313 (331)
Q Consensus 304 ~~~~~i~~~~ 313 (331)
-+++.+...-
T Consensus 382 P~~~ci~~vp 391 (974)
T PRK13412 382 PEGVCIDVVP 391 (974)
T ss_pred CCCcEEEEEE
Confidence 7777765433
No 248
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.00 E-value=0.00033 Score=64.89 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=106.6
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHH------cCCCEEEEEeccChHHHHHHHHHhhhccCeEE
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKA------VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~------~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v 75 (331)
+++||||.|+||+- ..||.++|+ .++++++..++++.. ..+--+++.+....++++++++++.. .+.++
T Consensus 59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg-~~~~v 134 (420)
T PF01704_consen 59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFG-LDVDV 134 (420)
T ss_dssp EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCG-SSCCE
T ss_pred EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcC-CCcce
Confidence 57799999999987 789999999 466899988887775 23555666666667899999998432 11122
Q ss_pred EEeeC-----------------C------c---ccCChHH--HHH---HHhhccCCCCCcEEEEeCCeeccccHHHHHHH
Q 020113 76 TCSQE-----------------T------E---PLGTAGP--LAL---ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF 124 (331)
Q Consensus 76 ~~~~~-----------------~------~---~~G~~~a--l~~---~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~ 124 (331)
.+..| . . |.|.++- .+. .++.+....-+++.+.+.|.+...-=..++..
T Consensus 135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~ 214 (420)
T PF01704_consen 135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY 214 (420)
T ss_dssp EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence 21111 0 0 3355542 222 22333333334999999999554433467778
Q ss_pred HhhcCCceEEE----ecCCCCceEEEEcCCcCceeEeeecCCC--------CCCCeEEEEEEEEChhhHhhc
Q 020113 125 HRGRGGEASIM----VDEPSKYGVVVMEETTGKVEKFVEKPKN--------FVGNKINAGIYLLNPSVLDRI 184 (331)
Q Consensus 125 ~~~~~~~~~i~----~~~~~~~~~v~~d~~~~~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l 184 (331)
+.++++++.+- ......-|++...+..-++.++.+-|.+ ....+.++|--.|+-+.++.+
T Consensus 215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 215 MIEKNADFGMEVVPKTSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHTT-SEEEEEEE-CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHhccchhheeeeecCCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 88888887665 2223455655543321335555544322 123567888889998888765
No 249
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.98 E-value=6.1e-05 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=12.8
Q ss_pred cCCCceEec-ceEEcC-CcEECCCcEEC
Q 020113 242 LATGSNIIG-NVLVHE-GAKIGDGCLIG 267 (331)
Q Consensus 242 i~~~~~i~~-~~~i~~-~~~i~~~~~I~ 267 (331)
+++.+.|++ .+.++. .+.||++|.|+
T Consensus 4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~ 31 (145)
T cd03349 4 VGDYSYGSGPDCDVGGDKLSIGKFCSIA 31 (145)
T ss_pred EeCceeeCCCCceEeCCCeEECCCCEEC
Confidence 455555554 333332 45555555555
No 250
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.97 E-value=1.1e-05 Score=61.07 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=50.8
Q ss_pred cCCCceEec---ceEEcCCcEECCCcEECCC-----CCceEeCCEEcCCCEECCCcEEcc-----ceEECCCcEECcccE
Q 020113 242 LATGSNIIG---NVLVHEGAKIGDGCLIGPD-----KHACISSSIIGWHSTVGRWARVEN-----MTILGEDVHVADEVY 308 (331)
Q Consensus 242 i~~~~~i~~---~~~i~~~~~i~~~~~I~~~-----~~~~i~~s~i~~~~~ig~~~~i~~-----~~~i~~~~~i~~~~~ 308 (331)
+.+++.|.+ ++.+|.-|+++.+|+|.|+ .+-..=...||+++.|++.|.+.. .+.||.|+.||.+|+
T Consensus 42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCV 121 (184)
T KOG3121|consen 42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCV 121 (184)
T ss_pred EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceE
Confidence 456666653 4555555666666666555 222223467899999999988766 244555555555555
Q ss_pred Ec-CcEEccCeEEccCccCC
Q 020113 309 SN-GAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 309 i~-~~~v~~~~~i~~~~~~~ 327 (331)
|+ .|.|-+++++.++.-.+
T Consensus 122 lkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 122 LKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred hhhheeccCCcccCcccccC
Confidence 54 35556666666554443
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.95 E-value=3e-05 Score=76.66 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=50.2
Q ss_pred cCCccCCCceEecceE-------EcCCcEECCCcEECCC---CCceEeC-CEEcCCCEECCCcEEccceEECCCcEECcc
Q 020113 238 SSSKLATGSNIIGNVL-------VHEGAKIGDGCLIGPD---KHACISS-SIIGWHSTVGRWARVENMTILGEDVHVADE 306 (331)
Q Consensus 238 ~~~~i~~~~~i~~~~~-------i~~~~~i~~~~~I~~~---~~~~i~~-s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 306 (331)
..++|++++.|.+... ||+||.|+++|.|... .+....+ .+||++|.||.+|.|..++.||+++.|+++
T Consensus 111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgag 190 (695)
T TIGR02353 111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHG 190 (695)
T ss_pred cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 3567888888876433 5555555555555321 1122223 488999999999999877999999999999
Q ss_pred cEEcC
Q 020113 307 VYSNG 311 (331)
Q Consensus 307 ~~i~~ 311 (331)
+.+.+
T Consensus 191 S~V~~ 195 (695)
T TIGR02353 191 SALQG 195 (695)
T ss_pred CEecC
Confidence 88864
No 252
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.93 E-value=0.00012 Score=68.61 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=107.7
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc--------------C--CCEEEEEeccChHHHHHH
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV--------------G--VTEVVLAINYQPEVMLNF 63 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~--------------g--i~~i~iv~~~~~~~i~~~ 63 (331)
+|+||||.|+||+- ..||.|++|+ ++++++...+++... + +.-+++.+....++++++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 57789999999987 7899999885 889999999876431 1 233444445666889999
Q ss_pred HHHhhhccCe---EEEEeeC---------------------CcccCChHHHHH-----HHhhccCCCCCcEEEEeCCeec
Q 020113 64 LKEFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~---------------------~~~~G~~~al~~-----~~~~~~~~~~~~~lv~~~D~i~ 114 (331)
+++. ..+|. .+.+..| ..|.|.++-... .++.+....-+++.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 9862 22221 2332222 135566553321 2333333323388899999954
Q ss_pred c-ccHHHHHHHHhhcCCceEEE-e--c-CCCCceEEEE-cCCcCc--eeEeeecCCC------C-----CCCeEEEEEEE
Q 020113 115 E-YPLKQMIEFHRGRGGEASIM-V--D-EPSKYGVVVM-EETTGK--VEKFVEKPKN------F-----VGNKINAGIYL 175 (331)
Q Consensus 115 ~-~~l~~~l~~~~~~~~~~~i~-~--~-~~~~~~~v~~-d~~~~~--v~~~~ek~~~------~-----~~~~~~~Giy~ 175 (331)
. .--..++-.+..++.++.+- + . ..+.-|.+.. +.+ ++ +.++.|-+.. + .-...+.+.++
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~ 353 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM 353 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence 3 33456777778888887765 2 2 2345566654 232 44 5555553321 1 11355778888
Q ss_pred EChhhHhhc
Q 020113 176 LNPSVLDRI 184 (331)
Q Consensus 176 ~~~~~l~~l 184 (331)
|+-++++.+
T Consensus 354 fs~~fL~~~ 362 (493)
T PLN02435 354 FTLDFLNQV 362 (493)
T ss_pred ccHHHHHHH
Confidence 998888765
No 253
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.86 E-value=5.1e-05 Score=62.89 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=46.2
Q ss_pred cceEEcCCcEECCCcEECCC--------CCc--e--EeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcC
Q 020113 250 GNVLVHEGAKIGDGCLIGPD--------KHA--C--ISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNG 311 (331)
Q Consensus 250 ~~~~i~~~~~i~~~~~I~~~--------~~~--~--i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 311 (331)
.++.|++++.++++|.|.++ .+. . ...++||++|+||.++.|..++.||+++.||+++++++
T Consensus 86 ~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 86 EGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 44556666666666666532 111 1 12599999999999999999999999999999999975
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.78 E-value=2.1e-05 Score=46.00 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=6.7
Q ss_pred CEEcCCCEECCCcEE
Q 020113 277 SIIGWHSTVGRWARV 291 (331)
Q Consensus 277 s~i~~~~~ig~~~~i 291 (331)
+.|+++|.|++++.|
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 444444444444444
No 255
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.76 E-value=3.7e-05 Score=44.16 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=11.9
Q ss_pred EcCCCEECCCcEEccceEECCCcEECcccEE
Q 020113 279 IGWHSTVGRWARVENMTILGEDVHVADEVYS 309 (331)
Q Consensus 279 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 309 (331)
||++|.||.+|.+ + ..||++|+|++|+.|
T Consensus 4 IG~~~~ig~~~~i-g-i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI-G-ITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE-T-SEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc-C-CEEcCCCEECCCCEE
Confidence 4444444444444 2 555555555555544
No 256
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.64 E-value=8.7e-05 Score=42.64 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=13.1
Q ss_pred EECCCcEECCCCCceEeCCEEcCCCEECCCcEE
Q 020113 259 KIGDGCLIGPDKHACISSSIIGWHSTVGRWARV 291 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i 291 (331)
.||++|.|+ .+|.+ +..||++|.|++++.|
T Consensus 3 ~IG~~~~ig--~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIG--ANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE---TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEEC--ccccc-CCEEcCCCEECCCCEE
Confidence 445555555 33443 3556666666666554
No 257
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.002 Score=59.32 Aligned_cols=175 Identities=23% Similarity=0.275 Sum_probs=102.0
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC-CcchHHHHHHHHHHc------CCCEEEEEeccChHHHHHHHHHhhhccC--
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLE-- 72 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~-- 72 (331)
.+++||||+|+||+- ..||.+++|. |+++++.+.++++.+ .+..+++.+ .+.++...++... ...+
T Consensus 107 Avl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS-~nt~~t~s~f~~~-~Y~~~~ 181 (472)
T COG4284 107 AVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTS-LNTEETDSYFKSN-DYFGLD 181 (472)
T ss_pred EEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEec-CCcHHHHHHHhhh-hhcCCC
Confidence 468899999999998 6899999998 889999999877753 355666655 5555555555431 1111
Q ss_pred -eEEEEeeC-----------------------CcccCChH---HHHH--HHhhccCCCCCcEEEEeCCeeccccH-HHHH
Q 020113 73 -IKITCSQE-----------------------TEPLGTAG---PLAL--ARDKLIDDSGEPFFVLNSDVISEYPL-KQMI 122 (331)
Q Consensus 73 -~~v~~~~~-----------------------~~~~G~~~---al~~--~~~~~~~~~~~~~lv~~~D~i~~~~l-~~~l 122 (331)
..+.+-.| .-|.|.++ ++.. ..+.+-...-+.+.|.+.|.+. ..+ -.++
T Consensus 182 k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~-~~vD~~~l 260 (472)
T COG4284 182 KEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLG-ATVDLKFL 260 (472)
T ss_pred HHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccc-cccCHHHH
Confidence 01111111 11334433 3332 2333322222388899999943 333 3466
Q ss_pred HHHhhcCCceEEE-e---cCCCCceEEE-EcCCcCceeEeeecCCCCC------C----CeEE-EEEEEEChhhHhh
Q 020113 123 EFHRGRGGEASIM-V---DEPSKYGVVV-MEETTGKVEKFVEKPKNFV------G----NKIN-AGIYLLNPSVLDR 183 (331)
Q Consensus 123 ~~~~~~~~~~~i~-~---~~~~~~~~v~-~d~~~~~v~~~~ek~~~~~------~----~~~~-~Giy~~~~~~l~~ 183 (331)
..+..++.+.++- + .....-|++. .++. -+++++.+-|.+.. + ...+ .++++++-+.+..
T Consensus 261 g~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~ 336 (472)
T COG4284 261 GFMAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKE 336 (472)
T ss_pred HHHHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHh
Confidence 6777777777766 2 2223445444 6765 67888877655311 1 1223 6677777766654
No 258
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.53 E-value=0.00024 Score=58.66 Aligned_cols=75 Identities=16% Similarity=0.377 Sum_probs=56.8
Q ss_pred cceEEcCCc-----EECCCcEECCCCCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEc-CcEEccCeEEccC
Q 020113 250 GNVLVHEGA-----KIGDGCLIGPDKHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN-GAVVLPHKEIKSS 323 (331)
Q Consensus 250 ~~~~i~~~~-----~i~~~~~I~~~~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 323 (331)
+.++||++| ++|+....| ++++|.+.+++.+|.|+++|.+.++++.+.+.+||.++.|+ +-++.+.-.|+++
T Consensus 21 gdViIG~nS~l~~~V~g~~iivg--e~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~d 98 (277)
T COG4801 21 GDVIIGKNSMLKYGVVGEEIIVG--ERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGAD 98 (277)
T ss_pred ccEEEcccceeeeeeeeeeEEec--cCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccc
Confidence 445555544 566777778 88999999999999999999999999999999999999886 4444455555555
Q ss_pred ccC
Q 020113 324 IVN 326 (331)
Q Consensus 324 ~~~ 326 (331)
+..
T Consensus 99 V~I 101 (277)
T COG4801 99 VII 101 (277)
T ss_pred eEE
Confidence 443
No 259
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.41 E-value=0.00011 Score=56.16 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=13.9
Q ss_pred ccCCCceEecceEEcC---CcEECCCcEEC
Q 020113 241 KLATGSNIIGNVLVHE---GAKIGDGCLIG 267 (331)
Q Consensus 241 ~i~~~~~i~~~~~i~~---~~~i~~~~~I~ 267 (331)
.++++|+++|.+++-. --+||+||.|+
T Consensus 28 ti~~gcVvHP~a~~iA~aGPI~iGEnniiE 57 (190)
T KOG4042|consen 28 TIKEGCVVHPFAVFIATAGPIYIGENNIIE 57 (190)
T ss_pred EecCCcEecceEEEEcccCCEEEccCchhh
Confidence 3455666655544433 22555666555
No 260
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00028 Score=57.97 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=18.1
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
=.||+||.||.++.| .+..||.|++|+++
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavIaAG 230 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAG 230 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEEecc
Confidence 466777777777665 45666666666544
No 261
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.38 E-value=0.00052 Score=60.80 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=99.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHcC----------CCEEEEEeccChHHHHHHHHHhh
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAVG----------VTEVVLAINYQPEVMLNFLKEFE 68 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~g----------i~~i~iv~~~~~~~i~~~~~~~~ 68 (331)
-+|+||||.|+||+- ..||.++|+ .|+++++..++++.+.. +.-+++.+....+++++++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 368899999999987 789999999 48899999998886532 33344444455688999998621
Q ss_pred hccC---eEEEEee------------------------CCcccCChHHHHHH-----HhhccCCCCCcEEEEeCCeecc-
Q 020113 69 KKLE---IKITCSQ------------------------ETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISE- 115 (331)
Q Consensus 69 ~~~~---~~v~~~~------------------------~~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~i~~- 115 (331)
.+| ..+.+.. ...|.|.++-.... ++.+....-+++.+..-|....
T Consensus 79 -yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 79 -YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred -ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 111 1111111 11245555432211 2223222223777777777433
Q ss_pred ccHHHHHHHHhhcCCceEEE---ecCCCCceEEEE-c-CCcCc--e--eEeeecCC------------CCCC----CeEE
Q 020113 116 YPLKQMIEFHRGRGGEASIM---VDEPSKYGVVVM-E-ETTGK--V--EKFVEKPK------------NFVG----NKIN 170 (331)
Q Consensus 116 ~~l~~~l~~~~~~~~~~~i~---~~~~~~~~~v~~-d-~~~~~--v--~~~~ek~~------------~~~~----~~~~ 170 (331)
.-...++-.+..++.++... ..+.+.-|++.. + .+ |+ + .++.|-+. .... ...+
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~-g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gN 236 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNN-GKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGN 236 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCC-CceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCe
Confidence 33445556666667766544 223345565553 1 22 22 3 44544221 0011 1567
Q ss_pred EEEEEEChhhHhh
Q 020113 171 AGIYLLNPSVLDR 183 (331)
Q Consensus 171 ~Giy~~~~~~l~~ 183 (331)
++.++|+-+.+..
T Consensus 237 i~~~~f~l~~~~~ 249 (315)
T cd06424 237 INQLVFSLGPYMD 249 (315)
T ss_pred eeeEEEeHHHHHH
Confidence 8888888776554
No 262
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.03 E-value=0.0029 Score=52.31 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=16.1
Q ss_pred eEECCCcEECcccEE-cCcEEccCeEEccC
Q 020113 295 TILGEDVHVADEVYS-NGAVVLPHKEIKSS 323 (331)
Q Consensus 295 ~~i~~~~~i~~~~~i-~~~~v~~~~~i~~~ 323 (331)
++||++|.||.+++| .+..|+++++|+++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigag 154 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAG 154 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeC
Confidence 566666666666655 24455555555543
No 263
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.80 E-value=0.03 Score=54.39 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=79.5
Q ss_pred EEEEeCCCCcccCCCCCCCCCCCcee---CCcchHHHHHHHHHHc--------C-----CCEEEEEeccChHHHHHHHHH
Q 020113 3 ALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------G-----VTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 3 avIlA~G~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~--------g-----i~~i~iv~~~~~~~i~~~~~~ 66 (331)
+|+||||.|+||+- ..||.++|+ .|+++++..++++... + +--+++.+....+.+.+++++
T Consensus 131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~ 207 (615)
T PLN02830 131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER 207 (615)
T ss_pred EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence 57889999999987 679999997 4899999999987653 1 233444444556889999987
Q ss_pred hhhccC---eEEEEeeC------------------------CcccCChHHHHHH-----HhhccCCCCCcEEEEeCCeec
Q 020113 67 FEKKLE---IKITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 67 ~~~~~~---~~v~~~~~------------------------~~~~G~~~al~~~-----~~~~~~~~~~~~lv~~~D~i~ 114 (331)
. ..+| ..+.+..| ..|.|.++-.... ++.+....-+++.+...|...
T Consensus 208 n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L 286 (615)
T PLN02830 208 N-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL 286 (615)
T ss_pred C-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence 2 1111 11221111 1234444322111 222322222388899999832
Q ss_pred -cccHHHHHHHHhhcCCceEEE
Q 020113 115 -EYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 115 -~~~l~~~l~~~~~~~~~~~i~ 135 (331)
..-...++-.+..++.++.+.
T Consensus 287 ~~~Adp~flG~~~~~~~d~~~k 308 (615)
T PLN02830 287 VFKAIPAALGVSATKGFDMNSL 308 (615)
T ss_pred hhcccHHHhHHHHhcCCceEEE
Confidence 222377888888888887665
No 264
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.78 E-value=0.027 Score=43.53 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=68.0
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|..|+ +++.++++++.+.+ ..+++++.+...+...+.+.++... .............|.+.++..+++....+
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-- 79 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARGE-- 79 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcCC--
Confidence 444444 89999999999987 7788888877666677777664332 12233444556778899998888888543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHh
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.++++.+|.+...+ +..++..+.
T Consensus 80 -~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 80 -YILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred -EEEEECCCCccCccHHHHHHHHHh
Confidence 89999999987665 555544443
No 265
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.45 E-value=0.024 Score=44.81 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred ceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+++.+.+. ...+++|+-+...+...+.+.++.+ ....+.++..+...|.+.+...+++....+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~-- 80 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKGE-- 80 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--SS--
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccccee--
Confidence 566566 6899999988876 4567777665544566777776543 234566666666668899999999998775
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++..|.+...+ ++.+++.+.+.+.++.+.
T Consensus 81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 89999999976665 889999988877765544
No 266
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.39 E-value=0.0072 Score=50.15 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=28.7
Q ss_pred CCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccC
Q 020113 262 DGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPH 317 (331)
Q Consensus 262 ~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 317 (331)
.+|.|+ ..|.+. |.+.+.+++||.+++|.+.-+...+-.||+++.|+++.+..+
T Consensus 55 ~dirid--mw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva~g 109 (277)
T COG4801 55 KDIRID--MWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVAKG 109 (277)
T ss_pred cceeee--eeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeeecc
Confidence 444444 445553 445555555555555555555555555555555555555544
No 267
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.85 Score=41.62 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=43.0
Q ss_pred EEEeCCCCcccCCCCCCCCCCCcee-CCcchHHHHHHHHHHc----C--CCEEEEEeccChHHHHHHHHHhh
Q 020113 4 LILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G--VTEVVLAINYQPEVMLNFLKEFE 68 (331)
Q Consensus 4 vIlA~G~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~~~ 68 (331)
+=|-||.|+-|+- ..||.++.+ .|.+.|+-++++.... + +--+.+-+-...++.+.+++++.
T Consensus 107 lKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 107 LKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred EEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 3467999999998 789999999 5678777666555432 2 33444444355678888888754
No 268
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.26 E-value=0.0024 Score=49.12 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred EECCCcEECCCCCceEe-CCEEcCCCEECCCcEEccceEECCCcEECcccEEc
Q 020113 259 KIGDGCLIGPDKHACIS-SSIIGWHSTVGRWARVENMTILGEDVHVADEVYSN 310 (331)
Q Consensus 259 ~i~~~~~I~~~~~~~i~-~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 310 (331)
.+|++.+|+ .+|.+. ++.+.++|.+|..|++-..-.|-+++.|..-..++
T Consensus 97 kvGd~NVie--skayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~ 147 (190)
T KOG4042|consen 97 KVGDRNVIE--SKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLS 147 (190)
T ss_pred hhcCcceEe--eeeEecCCcEEcCCceeccceEEecccccCCcceEEcccccc
Confidence 444444444 333332 23344444444444444433344444443333333
No 269
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=95.43 E-value=0.023 Score=47.79 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=49.5
Q ss_pred CeEEEEeCCCC---cccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhh-ccCeEEE
Q 020113 1 MKALILVGGFG---TRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-KLEIKIT 76 (331)
Q Consensus 1 m~avIlA~G~g---~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~v~ 76 (331)
|++||+--..+ |||.+. ++-.--.=.-+.|+..++..+.. ++ +++++... . +. .... ..+.++.
T Consensus 1 m~~VIPvK~~~~aKSRLs~~---L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~-~-v~----~~a~~~~g~~vl 68 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV---LSPEEREALALAMLRDVLAALRA--VD-VVVVSRDP-E-VA----ALARARLGAEVL 68 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT---S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES---S--T----TTTT---SSEEE
T ss_pred CeEEEEcCCCCccccccCcc---CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch-h-hh----hhhhhccCCeEe
Confidence 88899865443 677552 11000000123588999999987 56 66666422 1 11 1111 3455542
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHH
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFH 125 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~ 125 (331)
.++ ..|.-.++..+....... +++++++|+ +...++..+++..
T Consensus 69 --~d~-~~gLN~Al~~a~~~~~~~---~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 69 --PDP-GRGLNAALNAALAAAGDD---PVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp --E----S-HHHHHHHHHH-H--S----EEEE-S--TT--HHHHHHHCT-S
T ss_pred --cCC-CCCHHHHHHHHHhccCCC---ceEEeecCCccCCHHHHHHHHhcc
Confidence 333 457777777773333322 899999999 6677899988864
No 270
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.17 E-value=0.34 Score=38.20 Aligned_cols=101 Identities=25% Similarity=0.257 Sum_probs=66.5
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+|+.+.+.. ..+++|+-+...+...+.+.++.......+.+.......|.+.+...+++....+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~-- 80 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD-- 80 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC--
Confidence 455555 68888999888764 4566666555445555566654332223344555566778889998888887543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.....+ +..++..+.+..
T Consensus 81 -~i~~~D~D~~~~~~~l~~~~~~~~~~~ 107 (180)
T cd06423 81 -IVVVLDADTILEPDALKRLVVPFFADP 107 (180)
T ss_pred -EEEEECCCCCcChHHHHHHHHHhccCC
Confidence 88999999966555 777756555443
No 271
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.06 E-value=0.54 Score=38.66 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=65.7
Q ss_pred CceeCCcc---hHHHHHHHHHHcC--CCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 25 LVDFANKP---MILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~p---li~~~l~~l~~~g--i~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
++|..|+. .|..+|+.+.... ..+++|+-+.. .+...+.+..+..+.+ +.++......|.+.+...+....+
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35665552 8999999988753 24666554433 3556666666544444 444444555788888888888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+ .++++.+|.+...+ ++.+++.+.+..
T Consensus 81 gd---~i~~lD~Dd~~~~~~l~~~~~~~~~~~ 109 (201)
T cd04195 81 YD---WVARMDTDDISLPDRFEKQLDFIEKNP 109 (201)
T ss_pred CC---EEEEeCCccccCcHHHHHHHHHHHhCC
Confidence 43 88889999966554 788888775543
No 272
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=94.96 E-value=1.2 Score=36.27 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=67.6
Q ss_pred CeEEEEe---CCCCcccCCCCC-CCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEE
Q 020113 1 MKALILV---GGFGTRLRPLTL-SVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 1 m~avIlA---~G~g~rl~plt~-~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~ 76 (331)
|.+||+- ++.-+||.|.=. +.-+.++ .-||..++..+... +.+|.|++... + +..+-.+ .++
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde-~-~~~~a~~------~~v- 66 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE-E-VLVPATK------LEV- 66 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh-H-hhhhccc------cee-
Confidence 6778874 355677776411 1111111 24888888888886 67888887532 2 1111111 122
Q ss_pred EeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--eccccHHHHHHHHhhcCCceEEE
Q 020113 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 77 ~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
... .+.-.++.++++.+... + .++|+.+|+ +...+++++++...+ ++..+.
T Consensus 67 -l~d---~dLN~Ai~aa~~~~~~p-~-~v~vvmaDLPLl~~~~i~~~~~~~~d--~dvvia 119 (210)
T COG1920 67 -LAD---PDLNTAINAALDEIPLP-S-EVIVVMADLPLLSPEHIERALSAAKD--ADVVIA 119 (210)
T ss_pred -eec---cchHHHHHHHHhhCCCC-c-ceEEEecccccCCHHHHHHHHHhcCC--CcEEEe
Confidence 222 23567888888888764 2 799999999 566779998886543 444443
No 273
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=94.94 E-value=0.36 Score=40.27 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=67.6
Q ss_pred ceeCCc-chHHHHHHHHHHc------CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|..|. ..|..+++.+.+. ..-+++++-+...+...+.++++..+.+..+.++......|.+.++..+++...
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~ 82 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR 82 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc
Confidence 454444 5667777766653 234666665444445555666554433333455555566789999999988886
Q ss_pred CCCCCcEEEEeCCeeccc-cHHHHHHHHhhcCCceEEE
Q 020113 99 DDSGEPFFVLNSDVISEY-PLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~~~~i~ 135 (331)
.+ .++++.+|..... .+..+++...+.+.++.+.
T Consensus 83 gd---~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 83 GD---YILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CC---EEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 64 8889999996654 4888888755555554443
No 274
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.72 E-value=0.68 Score=36.40 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=65.6
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ .++..+++.+.+.. ..+++|+.+...+...+.+.+... .+.+...+...|.+.++..+++....+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~~~-- 76 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAKGD-- 76 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCCCC--
Confidence 455555 68999999998763 456777666555555656655321 355555566778899999888888543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++..|.....+ +..+++.+.+..
T Consensus 77 -~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 77 -YVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred -EEEEECCCcEECccHHHHHHHHHHhCC
Confidence 78888888866554 777777655443
No 275
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.71 E-value=0.65 Score=39.69 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=68.2
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|.-|. -.|..+++.+.+... -+++++.+...+...+.++++......++.........|.+.++..+++....+
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd 86 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFARGE 86 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcCCC
Confidence 444444 578888888877532 246665554445566666664322224455444445567888999888876553
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +.++++.+.+...+..++
T Consensus 87 ---~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 87 ---YVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred ---EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 88899999976655 788888887544444433
No 276
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=94.23 E-value=0.76 Score=37.10 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=69.6
Q ss_pred ceeCCc-chHHHHHHHHHHc----CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..+. ..|..+++.+.+. ...+++|+-+...+...+.+..+..+.. .+.++..+...|-+.+...+.+....+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd 81 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGD 81 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCC
Confidence 344444 4677888888776 2566666665544555666665443332 334555566778899999888888763
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +..+++...+.+.++.+.
T Consensus 82 ---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 82 ---IVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ---EEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 88999999865544 888888766655555444
No 277
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=94.22 E-value=0.97 Score=38.68 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=69.7
Q ss_pred CCCCC--CCceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHH
Q 020113 19 LSVPK--PLVDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLA 91 (331)
Q Consensus 19 ~~~pK--~llpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~ 91 (331)
...|+ -++|..|. ..|..+|+.+.+... -+++|+.+...+...+.++++... .+.++......|-+.++.
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n 102 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALN 102 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHH
Confidence 34444 45555566 688888888876432 257776655555666666665432 344455556678888888
Q ss_pred HHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhc
Q 020113 92 LARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGR 128 (331)
Q Consensus 92 ~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 128 (331)
.+.+....+ .++++.+|.+...+ ++++++.+.+.
T Consensus 103 ~gi~~a~~d---~i~~lD~D~~~~~~~l~~l~~~~~~~ 137 (251)
T cd06439 103 RALALATGE---IVVFTDANALLDPDALRLLVRHFADP 137 (251)
T ss_pred HHHHHcCCC---EEEEEccccCcCHHHHHHHHHHhcCC
Confidence 888887653 89999999976655 78888887543
No 278
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.84 E-value=0.12 Score=48.21 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=43.8
Q ss_pred cEEEEEe-CceEEecCCHHHHHHHHHHHHhhh--cc-c-cCCccCCCceEecceEEcCCcEECCCcEECCCCCceEeCCE
Q 020113 204 KLFAMVL-PGFWMDIGQPKDYITGLRLYLDFL--QK-N-SSSKLATGSNIIGNVLVHEGAKIGDGCLIGPDKHACISSSI 278 (331)
Q Consensus 204 ~i~~~~~-~~~~~~i~t~~d~~~a~~~~l~~~--~~-~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~I~~~~~~~i~~s~ 278 (331)
++.+... ++.|+.++|..+|++-...- ..+ .. . ........+.+.+.+.|- +|++..++.++ ++++|++|.
T Consensus 228 ~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~l~~~~~~~~~~~~~~~~~~~~~~~Vi-nSil~~~~~vg--~~svIe~s~ 303 (414)
T PF07959_consen 228 PLNVVPLPNGKFYHFGTSREYLEHLTSD-SELGIMRRKFSHSPATTPSDSEASSCVI-NSILEGGVSVG--PGSVIEHSH 303 (414)
T ss_pred cccccccCCceEEEecCCHHHHHhhccC-cccccceeeeeccccccccccCCCeeEE-EeEecCCceEC--CCCEEEeee
Confidence 4555544 47799999988877664332 111 00 0 000001122233333332 55566666666 556666666
Q ss_pred EcCCCEECCCcEEcc
Q 020113 279 IGWHSTVGRWARVEN 293 (331)
Q Consensus 279 i~~~~~ig~~~~i~~ 293 (331)
++.++.||.+|.|.+
T Consensus 304 l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 304 LGGPWSIGSNCIISG 318 (414)
T ss_pred cCCCCEECCCCEEEC
Confidence 666666666666655
No 279
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.68 E-value=1.1 Score=36.94 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred ceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|+ ..|..+|+.+.+... -+++|+-+...+...+.++++..+.+..+.+.......|.+.++..++...+.+
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~-- 81 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGD-- 81 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCC--
Confidence 455555 578899998887532 356665543334455556665544444455555566678888888876665543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++..|.....+ +..+++...+..
T Consensus 82 -~v~~ld~Dd~~~~~~l~~~~~~~~~~~ 108 (214)
T cd04196 82 -YVFFCDQDDIWLPDKLERLLKAFLKDD 108 (214)
T ss_pred -EEEEECCCcccChhHHHHHHHHHhcCC
Confidence 78888888865544 888888744433
No 280
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.66 E-value=1.1 Score=37.59 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred ceeCCc-chHHHHHHHHHHcC---CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~ 101 (331)
+|.-|. ..|..+++.+.+.- .-+++||-+...+...+.++++....+ .+.+.......|.+.++..++.....+
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd- 80 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGD- 80 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCC-
Confidence 455555 56888888887642 346666654433445555555433222 344455566778889999888887664
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|.....+ +..+++.+.+.+.++...
T Consensus 81 --~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 81 --VIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred --EEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 78899999866544 788888766555554333
No 281
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=92.93 E-value=1.8 Score=36.64 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=61.1
Q ss_pred CceeCCc-c-hHHHHHHHHHHcCC--CEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeCCcccC-ChHHHHHHHhhcc
Q 020113 25 LVDFANK-P-MILHQIEALKAVGV--TEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~-p-li~~~l~~l~~~gi--~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G-~~~al~~~~~~~~ 98 (331)
++|.-|. | +|..+++.+.+... -+++|+-+... ....+.++++.++.+.++.++......| .++++..+++...
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence 3566565 3 79999999988643 35666554332 2232333333222333455554444446 3778888888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
... |.++++..|.....+ +..++..+.
T Consensus 83 ~~~-d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 83 PDA-EIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCC-CEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 322 389999999966555 788888765
No 282
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.89 E-value=1.9 Score=38.17 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred ceeCCc--chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHH-hhhccCeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~-~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
+|.-|. ..|..+|+.+...-. .+|+||=+...+.....+.+ ........+.++..+...|-+.+...++....
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 83 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT 83 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc
Confidence 344444 488899998876421 26777665444333333322 11122234555655666788888888888775
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
.+ .++++.+|.....+ +..+++.+.+...
T Consensus 84 gd---~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 84 GD---VLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CC---EEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 54 89999999976554 8888888766544
No 283
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=92.72 E-value=1.5 Score=37.45 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred ceeCCc-chHHHHHHHHHHc----CCCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. .-|..+++.+.+. .--+|+|+-+...+...+.++++...++ ..+.+.......|.+.++..++.....
T Consensus 15 Ip~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g 94 (243)
T PLN02726 15 VPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASG 94 (243)
T ss_pred EccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 344444 5677777766542 1236666654444555666665543332 345445445566888888888877654
Q ss_pred CCCCcEEEEeCCeeccc-cHHHHHHHHhhcCCceEEE
Q 020113 100 DSGEPFFVLNSDVISEY-PLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~~~~i~ 135 (331)
+ .++++.+|...+. .+..+++...+.+.+++..
T Consensus 95 ~---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 95 D---FVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred C---EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 3 8889999996654 4788888776666655444
No 284
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.69 E-value=2 Score=36.37 Aligned_cols=102 Identities=12% Similarity=0.174 Sum_probs=65.1
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..|. +.|..+++.+.+... -+++|+-+...+...+.++.+... ...+.++.. ...|.+.++..+++..+.+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~-~~~~~~~a~N~g~~~a~~d 83 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN-PKRIQSAGLNIGIRNSRGD 83 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC-CCCCchHHHHHHHHHhCCC
Confidence 344444 578888998887543 367776655555666666665433 223444443 3446777888888777543
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcCCce
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEA 132 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~ 132 (331)
.++++.+|.....+ ++.+++.+.+.+..+
T Consensus 84 ---~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 84 ---IIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred ---EEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 88899999966554 788888766555443
No 285
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=92.62 E-value=0.33 Score=45.05 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=46.3
Q ss_pred eEEEEeCCCCcccCCCCCCCCCCCceeC---CcchHHHHHHHHHHc------------CCCEEEEEeccChHHHHHHHHH
Q 020113 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV------------GVTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 2 ~avIlA~G~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~------------gi~~i~iv~~~~~~~i~~~~~~ 66 (331)
.++++|+|.|+|++. ..||.+.+++ |+.++++..+.+... .+..++.+.....+...+++..
T Consensus 99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 368899999999988 7899999997 556888887755432 2445555555666778888774
No 286
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.54 E-value=1.8 Score=35.53 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=61.8
Q ss_pred eeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCC
Q 020113 27 DFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (331)
Q Consensus 27 pi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~ 103 (331)
|--|+ ..|..+|+.+.+.. ..+++|+-+...+...+.++++....+ +.+....+..|.+.++..+.+.......+
T Consensus 4 ~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d 81 (202)
T cd04185 4 VTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYD 81 (202)
T ss_pred EeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCC
Confidence 43343 57899999988753 236666655444567777776544333 44555555667777776666654322233
Q ss_pred cEEEEeCCeecccc-HHHHHHHHh
Q 020113 104 PFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 104 ~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.++++..|.....+ +..+++.+.
T Consensus 82 ~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 82 WIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred EEEEeCCCCCcChHHHHHHHHHHh
Confidence 78899999977655 677777665
No 287
>PRK11204 N-glycosyltransferase; Provisional
Probab=92.33 E-value=1.9 Score=40.33 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=66.8
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCC
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~ 101 (331)
++|..|. ..+..+++.+.+... -+++|+-+...+...+.++++..+. .++.++...+..|-+.++..+.+..+.+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~~d- 136 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAARSE- 136 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcCCC-
Confidence 4454565 688999998887542 3666665544455555555544332 2355555455668888888888876543
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.+...+ +.++++.+++..
T Consensus 137 --~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 137 --YLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred --EEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 89999999976655 788888775443
No 288
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.23 E-value=3.7 Score=34.47 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred ceeCCc--chHHHHHHHHHHcCCC----EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCccc-CChHHHHHHHhhcc
Q 020113 26 VDFANK--PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPL-GTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi~----~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~-G~~~al~~~~~~~~ 98 (331)
+|..|. .++..+++.+...... +++|+-+...+...+.+..+.......+ ....... +.+.++..+++...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRY--LTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceE--EEeCCCCCCcHHHHHHHHHhCC
Confidence 455564 3788999998875432 6777666555677777777654332233 3323333 34566777777664
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
.+ .++++..|.+.+.+ +..+++.+.+
T Consensus 85 ~d---~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 GD---FVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CC---EEEEEccccCcCccHHHHHHHHHhc
Confidence 33 88899999976655 7888887765
No 289
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.93 E-value=2.3 Score=34.28 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred ceeCCc-chHHHHHHHHHHc-----CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEALKAV-----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~-----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. ..|..+++.+.+. ..-+++++-+...+...+.++.+..+.. .+.++......|.+.++..++.....
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~~ 81 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHARG 81 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcCC
Confidence 344333 2455555554432 2346777665444555555665443322 34455545567888999888887765
Q ss_pred CCCCcEEEEeCCeecccc-HHHHHHHHhhcCCceE
Q 020113 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGEAS 133 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~ 133 (331)
+ .++++.+|.....+ ++.+++. .+.+.++.
T Consensus 82 d---~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v 112 (181)
T cd04187 82 D---AVITMDADLQDPPELIPEMLAK-WEEGYDVV 112 (181)
T ss_pred C---EEEEEeCCCCCCHHHHHHHHHH-HhCCCcEE
Confidence 3 88899999976554 7888887 34444443
No 290
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.60 E-value=3.5 Score=33.80 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=55.4
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCcccCC---hHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGT---AGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~G~---~~al~~~~~~~~ 98 (331)
+|..|. +-|..+|+.+.+.. --+++||.+...+...+.+.++...+. ..+.++......|. +.++..+.+...
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~ 86 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR 86 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC
Confidence 455444 57888888887642 246666665444444555555433322 33444443333343 334545555554
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHh
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 126 (331)
.+ .++++.+|.....+ +..+++...
T Consensus 87 ~d---~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 87 YD---ILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred CC---EEEEECCCceEChhHHHHHHHHhh
Confidence 33 88889999966554 777777653
No 291
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.24 E-value=3 Score=33.78 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=59.7
Q ss_pred eeCCc-chHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCC
Q 020113 27 DFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (331)
Q Consensus 27 pi~g~-pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~ 103 (331)
|.-|. ..|..+++.+.+.... +|+|+-+...+...+.+.++... +.+....+..|.+.++..+++....+
T Consensus 5 ~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~~~--- 77 (202)
T cd06433 5 PTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALATGD--- 77 (202)
T ss_pred eccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcCCC---
Confidence 44344 5888999988875443 56555443344556666654332 22233345568888888888877653
Q ss_pred cEEEEeCCeecc-ccHHHHHHHHhhc
Q 020113 104 PFFVLNSDVISE-YPLKQMIEFHRGR 128 (331)
Q Consensus 104 ~~lv~~~D~i~~-~~l~~~l~~~~~~ 128 (331)
.++++.+|.... ..+..++..+.+.
T Consensus 78 ~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 78 IIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EEEEeCCCcccCchHHHHHHHHHHhC
Confidence 888899998654 4477877555444
No 292
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=91.01 E-value=5.1 Score=32.38 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=61.9
Q ss_pred CceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhcc-
Q 020113 25 LVDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI- 98 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~- 98 (331)
++|..|. ..|..+++.+.+... -+|+|+.+...+...+.+..+ +..+.........|.+.++..+.....
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~ 77 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLN 77 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 3565554 688888998877543 356666655545555555543 233433333445577888887777663
Q ss_pred -CCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 99 -DDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 99 -~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
....|.++++.+|.....+ +..+++.+.+
T Consensus 78 ~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 78 LADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1222378899999977655 7788777654
No 293
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=90.83 E-value=2.9 Score=38.52 Aligned_cols=100 Identities=10% Similarity=0.174 Sum_probs=58.6
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhcc-CeEEEEeeCCcccCCh---HHHHHHHhhc
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTA---GPLALARDKL 97 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~G~~---~al~~~~~~~ 97 (331)
++|..|. +.|..+++.+.+... -+|+++.+...+...+.++++..++ ..++.++..+.+.|.. .++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 5566555 889999999987643 3666655433333344444443322 2345555444444532 3444444444
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
+. |.++++.+|.....+ ++.+++.+.+
T Consensus 126 ~g---e~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 126 RH---DILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred cC---CEEEEECCCCCcChhHHHHHHHHhcC
Confidence 33 389999999976665 7888877653
No 294
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=90.35 E-value=3.2 Score=39.24 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=65.0
Q ss_pred CCceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 24 PLVDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 24 ~llpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
-++|..|. .-+..+++.+.+... -+++++.+...+...+.+.++..+.+ ++.++......|-+.++..+......+
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~~d 157 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAARSE 157 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCCCC
Confidence 45666666 678899998877532 36777665444445555555433322 233444344567788888887765443
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.++++.+|.+.+.+ +..+++.+.+..
T Consensus 158 ---~iv~lDAD~~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 158 ---YLVCIDGDALLDKNAVPYLVAPLIANP 184 (444)
T ss_pred ---EEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence 89999999977665 777887765443
No 295
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=90.28 E-value=4.5 Score=34.01 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCC
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D 111 (331)
+.|..+|+.+.+....+++|+.+...+...+.+...... ..+.+.. ....|-..++..++.....+ .++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~-~~~~g~~~a~n~g~~~a~~d---~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--GGIFVIT-VPHPGKRRALAEGIRHVTTD---IVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--CcEEEEe-cCCCChHHHHHHHHHHhCCC---EEEEECCC
Confidence 689999999887655677777765555555555332222 2232332 33457778887777776443 89999999
Q ss_pred eecccc-HHHHHHHHh
Q 020113 112 VISEYP-LKQMIEFHR 126 (331)
Q Consensus 112 ~i~~~~-l~~~l~~~~ 126 (331)
.....+ ++.+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 977665 788888776
No 296
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.48 E-value=4.7 Score=33.61 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred ceeCCc-chHHHHHHHHHHcCC----CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC--cccCChHHHHHHHhhcc
Q 020113 26 VDFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET--EPLGTAGPLALARDKLI 98 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~G~~~al~~~~~~~~ 98 (331)
+|..|. ..|..+|+.+..... -+|+|+-+...+...+.+..........+.++... ...|...++..++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 555555 578899998876532 35666655433444444440011122344444433 24566667777777654
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcCCc
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGE 131 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 131 (331)
.+ .++++.+|.+...+ ++.+++.+.+.+..
T Consensus 83 ~d---~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 83 GD---WIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred CC---EEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 43 88899999976655 78888876655443
No 297
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=89.34 E-value=5 Score=37.89 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred CceeCCc-chHHHHHHHHHHcCC--C--EEEEEeccChHHHHHHHHHhhhcc-CeEEEEeeCCcccCChHHHHHHHhhcc
Q 020113 25 LVDFANK-PMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLI 98 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~--~i~iv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~G~~~al~~~~~~~~ 98 (331)
++|.-|. ..|..+++.+.+... + +|+|+-+...+...+.++++.+.. .+.+... +...|-+.++..+++...
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s~ 131 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNSI 131 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHcc
Confidence 4455455 789999999887543 2 466655544455666655543322 2333333 344688889998888765
Q ss_pred CCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 99 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+ .++++.+|.+...+ ++.+++.+.+.+
T Consensus 132 g~---~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 132 GK---YIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CC---EEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 43 88889999977655 788888876443
No 298
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.33 E-value=5.3 Score=31.97 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=59.1
Q ss_pred ceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-CcccCChHHHHHHHhhccCCC
Q 020113 26 VDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLIDDS 101 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~G~~~al~~~~~~~~~~~ 101 (331)
+|.-|+ ..|..+|+.+.+. ...+++|+-+...+...+.+.++....+.++..... ....|.+.+...+.+....+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~- 81 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD- 81 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCC-
Confidence 455555 5788999998874 234666665555556666776654332333333322 22334556666666666543
Q ss_pred CCcEEEEeCCeecccc-HHHHHHHH
Q 020113 102 GEPFFVLNSDVISEYP-LKQMIEFH 125 (331)
Q Consensus 102 ~~~~lv~~~D~i~~~~-l~~~l~~~ 125 (331)
.++++.+|.+...+ +..+++.+
T Consensus 82 --~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 82 --YLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred --EEEEEcCCcccCHHHHHHHHHHh
Confidence 88899999976655 67777665
No 299
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.14 E-value=7.5 Score=31.70 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHcCC--CEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEE
Q 020113 32 PMILHQIEALKAVGV--TEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (331)
Q Consensus 32 pli~~~l~~l~~~gi--~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~ 108 (331)
..+..+++.+.+.-. -+++|+-+... ..+...+..+... ...+.+.......|.+.++..++.....+ .++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~~d---~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELATGE---FVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhcCC---EEEEE
Confidence 678888888876532 25666544332 2344444433221 12344444555668888888888876553 78888
Q ss_pred eCCeecccc-HHHHHHHHhh
Q 020113 109 NSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 109 ~~D~i~~~~-l~~~l~~~~~ 127 (331)
..|.....+ ++.+++.+.+
T Consensus 91 d~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 91 DHDDELAPHALYEVVKALNE 110 (202)
T ss_pred CCCCcCChHHHHHHHHHHHh
Confidence 889866655 7888887733
No 300
>PRK10073 putative glycosyl transferase; Provisional
Probab=89.05 E-value=6.6 Score=35.45 Aligned_cols=105 Identities=8% Similarity=0.040 Sum_probs=66.5
Q ss_pred ceeCCc-chHHHHHHHHHHcCC--CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi--~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|. ..|..+++.+..... -+++|+-+...+...+.+.++..+. ..+.+..+ +..|.+.+...+++....+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~-~~i~vi~~-~n~G~~~arN~gl~~a~g~-- 87 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENY-PHVRLLHQ-ANAGVSVARNTGLAVATGK-- 87 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEEC-CCCChHHHHHHHHHhCCCC--
Confidence 455454 689999999987533 2555554433344444555443322 23444443 3568888888888887664
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.++++.+|-....+ ++.+++...+.+.++.+.
T Consensus 88 -yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 88 -YVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred -EEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 88899999865444 788888776666665544
No 301
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=88.86 E-value=4.7 Score=36.34 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=61.6
Q ss_pred ceeCCc-chHHHHHHHH----HHcCCC-EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 26 VDFANK-PMILHQIEAL----KAVGVT-EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l----~~~gi~-~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+|..|. .-|..+++.+ .+...+ +++++-+...+...+.+.++.++.+.++..+......|.+.++..+.+....
T Consensus 12 IP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~g 91 (325)
T PRK10714 12 IPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTG 91 (325)
T ss_pred EcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence 344343 3455555544 333332 5655554334455555555433334445444445566888999988887755
Q ss_pred CCCCcEEEEeCCeecc-ccHHHHHHHHhhcCCceE
Q 020113 100 DSGEPFFVLNSDVISE-YPLKQMIEFHRGRGGEAS 133 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~ 133 (331)
+ .++++.+|.-.+ ..+.++++.+.+ +.+++
T Consensus 92 d---~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV 122 (325)
T PRK10714 92 D---LIITLDADLQNPPEEIPRLVAKADE-GYDVV 122 (325)
T ss_pred C---EEEEECCCCCCCHHHHHHHHHHHHh-hCCEE
Confidence 3 888999999655 458888888753 45543
No 302
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=88.66 E-value=5.5 Score=34.82 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~ 109 (331)
..|..+++.+.+. ..+|+||=+.. .+.+.+.+.+ ...+.++..++..|-+.+...+++.......|.++++.
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4777888888875 45666654432 2234443332 12466666667779999998888876433334899999
Q ss_pred CCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 110 SDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 110 ~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
.|.....+ +..+++.+.+.+..+.++
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 99976554 788888776544244443
No 303
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=87.73 E-value=7.2 Score=36.05 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred CceeCCc-chHHHHHHHHHHcCC---CEEEEEeccChHHHHHHHHHhhhccC--eEEEEeeCC-cc---cCChHHHHHHH
Q 020113 25 LVDFANK-PMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKLE--IKITCSQET-EP---LGTAGPLALAR 94 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi---~~i~iv~~~~~~~i~~~~~~~~~~~~--~~v~~~~~~-~~---~G~~~al~~~~ 94 (331)
.+|..|. +.|..+++.+.+... -+|+|+-+...+...+.++++..+.+ ..+.++... .+ .|-..++..+.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 3444454 799999999987533 36776665444555555555433221 134444321 12 35556777777
Q ss_pred hhccCCC--CCcEEEEeCCeecccc-HHHHHHHHhhcCCce
Q 020113 95 DKLIDDS--GEPFFVLNSDVISEYP-LKQMIEFHRGRGGEA 132 (331)
Q Consensus 95 ~~~~~~~--~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~ 132 (331)
+...... .|.++++.+|...+.+ +.++++..++.+.+.
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 7665211 2388999999976555 789998887665543
No 304
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.54 E-value=9.9 Score=31.10 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHH-HcCCCEEEEEecc---Ch-HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCc
Q 020113 30 NKPMILHQIEALK-AVGVTEVVLAINY---QP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (331)
Q Consensus 30 g~pli~~~l~~l~-~~gi~~i~iv~~~---~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~ 104 (331)
|-|++-|.+.... +.+.+.=+|++.. +. .++.+.+++.... -++.........|.+.|..+++...+.+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--DNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--CcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 4567778777554 4566554444532 22 3444454442222 3455556677889999999999988764 5
Q ss_pred EEEEeCCeec-cccHHHHHHHHhhcCCceEEE
Q 020113 105 FFVLNSDVIS-EYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 105 ~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~i~ 135 (331)
+++..+|.-. +.-+.++++...+.+.+.+..
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~G 123 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLG 123 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeee
Confidence 6677788743 344788888777766665555
No 305
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.48 E-value=8.3 Score=36.04 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=72.7
Q ss_pred CceeCCc-c-hHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeC-CcccCChHHHHHHHhhccC
Q 020113 25 LVDFANK-P-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLID 99 (331)
Q Consensus 25 llpi~g~-p-li~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~G~~~al~~~~~~~~~ 99 (331)
++|.-|. + .++.+++.+.+.... +++++.+...++..+.+.+...+.+..+..... ....|-+.++..++.....
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~ 138 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKG 138 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCC
Confidence 4455565 6 899999999998644 777777655677777777765554222222222 4556778899998888864
Q ss_pred CCCCcEEEEeCCeecccc-HHHHHHHHhhcCCc
Q 020113 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGRGGE 131 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 131 (331)
+ -++++.+|.+...+ +.+++..+.+....
T Consensus 139 d---~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 139 D---VVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred C---EEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 3 78899999977666 78888888765544
No 306
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=85.88 E-value=9.5 Score=32.08 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=55.0
Q ss_pred ceeCCc-chHHHHHHHHHHcCCC----EEEEEeccChHHHHHHHHHhhh---ccCeEEEEeeCCcccC-ChHHHHHHHhh
Q 020113 26 VDFANK-PMILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEK---KLEIKITCSQETEPLG-TAGPLALARDK 96 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~----~i~iv~~~~~~~i~~~~~~~~~---~~~~~v~~~~~~~~~G-~~~al~~~~~~ 96 (331)
+|.-|. ..|..+|+.+.+.... +|+| +....+...+.+.++.. ..+.++..+......| .+.++..+.+.
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiV-vD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~ 85 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQV-LDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKV 85 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEE-EECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHh
Confidence 344444 6889999998874322 3444 33233333333333211 1234555555444455 46777777777
Q ss_pred ccCCCCCcEEEEeCCeecccc-HHHHHHHH
Q 020113 97 LIDDSGEPFFVLNSDVISEYP-LKQMIEFH 125 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~ 125 (331)
.+.+ .++++.+|.+...+ +..+...+
T Consensus 86 a~~~---~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 86 AKGE---YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CCCC---EEEEEcCCCCCChHHHHHhhhhh
Confidence 6554 89999999977655 66655443
No 307
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=85.61 E-value=12 Score=33.92 Aligned_cols=95 Identities=9% Similarity=0.109 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHHHc----------CCCEEEEEeccChHHHHHHHHHhhhcc---CeEEEEeeCCcccCChHHHHHHHhh
Q 020113 30 NKPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQETEPLGTAGPLALARDK 96 (331)
Q Consensus 30 g~pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~~~~~~~G~~~al~~~~~~ 96 (331)
..+-|..+++.+.+. +.-++++|-+...+...+.+.++.... +..+.++......|.+.++..++..
T Consensus 81 e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~ 160 (333)
T PTZ00260 81 EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLA 160 (333)
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 336777777766541 134666665443444555555543321 2345555556667889999888887
Q ss_pred ccCCCCCcEEEEeCCeecc-ccHHHHHHHHhh
Q 020113 97 LIDDSGEPFFVLNSDVISE-YPLKQMIEFHRG 127 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~ 127 (331)
...+ .++++.+|.-.+ .++..+++...+
T Consensus 161 a~gd---~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 161 SRGK---YILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred ccCC---EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6543 888999998554 457777776654
No 308
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=85.32 E-value=1.7 Score=36.55 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=54.2
Q ss_pred CceeCCc-chHHHHHHHHHHc--CCCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeCCccc---CChHHHHHHHhhc
Q 020113 25 LVDFANK-PMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPL---GTAGPLALARDKL 97 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~--gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~---G~~~al~~~~~~~ 97 (331)
++|..|+ +.|..+|+.+.+. .--+++|+.+...+...+.+..+...++ ..+.++...... +...++..++...
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 4566566 6888889888864 2346666665444444444444332222 234444433322 3567777887777
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
..+ .++++..|.+...+ +..+++.+.+.+
T Consensus 86 ~~d---~i~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 86 RGD---YILFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp --S---EEEEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred CCC---EEEEECCCcEECHHHHHHHHHHHHhCC
Confidence 643 89999999977655 788888883333
No 309
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=84.78 E-value=17 Score=30.16 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=59.5
Q ss_pred ceeCCc-chHHHHHHHHHHcCC---CEEEEEeccChHHHHHHHHHhhhcc---CeEEEEee--CCcccCChHHHHHHHhh
Q 020113 26 VDFANK-PMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQ--ETEPLGTAGPLALARDK 96 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi---~~i~iv~~~~~~~i~~~~~~~~~~~---~~~v~~~~--~~~~~G~~~al~~~~~~ 96 (331)
+|.-|. ..|..+|+.+.+... -+++|+-+...+...+.++++..+. ++.+.... .....|.+.+...+++.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~ 82 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQ 82 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHh
Confidence 444444 688999998877532 2666655443344444555443221 23332222 12345777777777776
Q ss_pred ccCCCCCcEEEEeCCeeccc-cHHHHHHHHhhcCC
Q 020113 97 LIDDSGEPFFVLNSDVISEY-PLKQMIEFHRGRGG 130 (331)
Q Consensus 97 ~~~~~~~~~lv~~~D~i~~~-~l~~~l~~~~~~~~ 130 (331)
.+.+ .++++.+|.+... .+..++..+.+...
T Consensus 83 a~gd---~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 83 SSGR---YLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred cCCC---EEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 6543 8889999986554 47777777765443
No 310
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=83.64 E-value=14 Score=30.91 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=55.1
Q ss_pred CCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 29 ~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
.+. ..|..+|+.+.+. ..+++|+=+...+..... .+. ....+.++..+...|-+.+...+.+.......|.+++
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~-~~~---~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELR-LRL---NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHH-hhc---cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEE
Confidence 455 7888999998876 456666544322222222 221 1234555555566788888888888775422238999
Q ss_pred EeCCeecccc-HHHHH
Q 020113 108 LNSDVISEYP-LKQMI 122 (331)
Q Consensus 108 ~~~D~i~~~~-l~~~l 122 (331)
+.+|.....+ +..++
T Consensus 82 lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDSVPPPDMVEKLL 97 (237)
T ss_pred ECCCCCcCHhHHHHHH
Confidence 9999976655 67775
No 311
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=83.27 E-value=1.6 Score=44.88 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=39.4
Q ss_pred CceEeCCEEcCCCEECCCcE-EccceEECCCcEECcccEEcCcEEcc-CeEEccCc
Q 020113 271 HACISSSIIGWHSTVGRWAR-VENMTILGEDVHVADEVYSNGAVVLP-HKEIKSSI 324 (331)
Q Consensus 271 ~~~i~~s~i~~~~~ig~~~~-i~~~~~i~~~~~i~~~~~i~~~~v~~-~~~i~~~~ 324 (331)
.+.|.+|++..++.+|+++. |.+ |.|+.++.||++++|.++...+ +.+|++++
T Consensus 331 ~~~v~ns~~~~~~s~~~~s~~vE~-s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ 385 (974)
T PRK13412 331 AMFVQNAVLSGKLTAENATLWIEN-SHVGEGWKLASRSIITGVPENSWNLDLPEGV 385 (974)
T ss_pred ceEEEeeEecCCcccCCCeEEEEe-eEecCCeEEcCCcEEecccccccceecCCCc
Confidence 35678899999999998855 666 9999999999999998775322 24444443
No 312
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=80.06 E-value=22 Score=36.55 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=61.8
Q ss_pred CceeCCcc--hHHHHHHHHHHcCC--C--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC-cccCChHHHHHHHhhc
Q 020113 25 LVDFANKP--MILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET-EPLGTAGPLALARDKL 97 (331)
Q Consensus 25 llpi~g~p--li~~~l~~l~~~gi--~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-~~~G~~~al~~~~~~~ 97 (331)
++|..|.+ ++..++..+.+... + +|+|+-+...++..+..++. + +.++..+ ...+-++++..+++..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~--v~yI~R~~n~~gKAGnLN~aL~~a 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----G--VKYIARPTHEHAKAGNINNALKYA 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----C--cEEEEeCCCCcchHHHHHHHHHhC
Confidence 45556876 67788887765432 1 56666554556666666552 3 3344332 3345678888888876
Q ss_pred cCCCCCcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
+.+ .++++.+|.+...+ ++.++..+.+...
T Consensus 339 ~GE---yIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 339 KGE---FVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred CCC---EEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 543 89999999987655 6777776655443
No 313
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=79.40 E-value=30 Score=29.09 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=59.4
Q ss_pred ceeCCc-chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCc
Q 020113 26 VDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~ 104 (331)
+|.-|. ..|..+|+.+... .++|+|+-+...+...+.+++ ++.++... ...|-+.+...++.....+ .
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~----~~~~v~~~---~~~g~~~~~n~~~~~a~~d---~ 74 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE----YGAKVYQR---WWDGFGAQRNFALELATND---W 74 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH----cCCEEEEC---CCCChHHHHHHHHHhCCCC---E
Confidence 344344 6788899888764 367877765544555555554 34454332 4557777777787777654 8
Q ss_pred EEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 105 FFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 105 ~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
++++.+|.+...+ +..+.+...+..
T Consensus 75 vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 75 VLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred EEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 8899999976655 555666554443
No 314
>PRK10063 putative glycosyl transferase; Provisional
Probab=78.82 E-value=41 Score=28.87 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=54.9
Q ss_pred CcchHHHHHHHHHH----cCC-CEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCc
Q 020113 30 NKPMILHQIEALKA----VGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (331)
Q Consensus 30 g~pli~~~l~~l~~----~gi-~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~ 104 (331)
....|..+++.+.+ .+. -+++|+=+...+...+.++++..... +.++.+. ..|.+.++..++.....+ .
T Consensus 12 ~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~--i~~i~~~-~~G~~~A~N~Gi~~a~g~---~ 85 (248)
T PRK10063 12 NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFN--LRFVSEP-DNGIYDAMNKGIAMAQGR---F 85 (248)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCC--EEEEECC-CCCHHHHHHHHHHHcCCC---E
Confidence 33578888888863 122 24555533334556666666533222 4444443 448889999898887653 7
Q ss_pred EEEEeCCeeccccHHHHHHHHhhcC
Q 020113 105 FFVLNSDVISEYPLKQMIEFHRGRG 129 (331)
Q Consensus 105 ~lv~~~D~i~~~~l~~~l~~~~~~~ 129 (331)
++++.+|-+...+..+++....+.+
T Consensus 86 v~~ld~DD~~~~~~~~~~~~~~~~~ 110 (248)
T PRK10063 86 ALFLNSGDIFHQDAANFVRQLKMQK 110 (248)
T ss_pred EEEEeCCcccCcCHHHHHHHHHhCC
Confidence 8888877765555434444444333
No 315
>PRK10018 putative glycosyl transferase; Provisional
Probab=78.51 E-value=24 Score=31.02 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=60.5
Q ss_pred ceeCCc-chHHHHHHHHHHcCCC--EEEEEeccCh--HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVGVT--EVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~--~i~iv~~~~~--~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~ 100 (331)
+|..|. ..|..+|+.+...... +++|+-+... +.+.++...+. ..++.++..+...|.+.+...++.....+
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~---~~ri~~i~~~~n~G~~~a~N~gi~~a~g~ 87 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN---DPRITYIHNDINSGACAVRNQAIMLAQGE 87 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC---CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 344454 6788899888765333 5555433222 33444444321 23566666666778888888888877654
Q ss_pred CCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 101 SGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 101 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
.++++.+|-....+ +..+++...+
T Consensus 88 ---~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 88 ---YITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ---EEEEECCCCCCCccHHHHHHHHHHh
Confidence 88899999866554 7888887654
No 316
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=76.99 E-value=41 Score=28.42 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred EEEeCCCCcccCCCCCCCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcc
Q 020113 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEP 83 (331)
Q Consensus 4 vIlA~G~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~ 83 (331)
++||.|.=..|.. .++ -+-..++|..++..+... .++-|++ +..+......++|... +.++.+..-+..
T Consensus 92 lllCTG~F~~l~~-----~~~--lleP~ril~~lV~al~~~--~~vGViv-P~~eQ~~~~~~kW~~l-~~~~~~a~asPy 160 (221)
T PF07302_consen 92 LLLCTGEFPGLTA-----RNP--LLEPDRILPPLVAALVGG--HQVGVIV-PLPEQIAQQAEKWQPL-GNPVVVAAASPY 160 (221)
T ss_pred EEeccCCCCCCCC-----Ccc--eeehHHhHHHHHHHhcCC--CeEEEEe-cCHHHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 5567775555533 233 233566888888877765 5777766 5566677677777643 344555554445
Q ss_pred cCChHHHHHHHhhccCCCCCcEEEEeCCeecc
Q 020113 84 LGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115 (331)
Q Consensus 84 ~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~ 115 (331)
.|+.+.+..+...+..... +++++.|=-++.
T Consensus 161 ~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt~ 191 (221)
T PF07302_consen 161 EGDEEELAAAARELAEQGA-DLIVLDCMGYTQ 191 (221)
T ss_pred CCCHHHHHHHHHHHHhcCC-CEEEEECCCCCH
Confidence 5889999999888875554 899988765543
No 317
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=76.32 E-value=53 Score=28.77 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHHHHHc--CCCEEEEEec-cChHHHHHHHHHhhhccCeEEEEeeC---CcccCChHHHHHHHhhccCCCCCcEEEEeCC
Q 020113 38 IEALKAV--GVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQE---TEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (331)
Q Consensus 38 l~~l~~~--gi~~i~iv~~-~~~~~i~~~~~~~~~~~~~~v~~~~~---~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D 111 (331)
+..+.+. ..+.-+|++. .......+.+.++....+.. .++.. ....|.+.+.-.+....+.+ .++++.+|
T Consensus 23 l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~-~~i~~~~~~~~f~~a~arN~g~~~A~~d---~l~flD~D 98 (281)
T PF10111_consen 23 LESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFI-RYIRHEDNGEPFSRAKARNIGAKYARGD---YLIFLDAD 98 (281)
T ss_pred HHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCce-EEEEcCCCCCCcCHHHHHHHHHHHcCCC---EEEEEcCC
Confidence 6666652 2333334443 33344445555544433333 12222 23457788888888877654 88899999
Q ss_pred eecccc-HHHHHH
Q 020113 112 VISEYP-LKQMIE 123 (331)
Q Consensus 112 ~i~~~~-l~~~l~ 123 (331)
++...+ +..+++
T Consensus 99 ~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 99 CIPSPDFIEKLLN 111 (281)
T ss_pred eeeCHHHHHHHHH
Confidence 987655 677777
No 318
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=74.70 E-value=28 Score=30.93 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=67.8
Q ss_pred eCCcchHHHHHHHHHHcCCCEEEE--EeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcE
Q 020113 28 FANKPMILHQIEALKAVGVTEVVL--AINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (331)
Q Consensus 28 i~g~pli~~~l~~l~~~gi~~i~i--v~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~ 105 (331)
.+....+..+++.+.+.......+ +-+...+...+.++... ...+.++....-.|-+.+...+.........+.+
T Consensus 12 yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~ 88 (305)
T COG1216 12 YNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---FPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV 88 (305)
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---CCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence 345578888899888876433333 33444455555655521 2356667767777877777766665543322149
Q ss_pred EEEeCCeecccc-HHHHHHHHhhcCCceEEE
Q 020113 106 FVLNSDVISEYP-LKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 106 lv~~~D~i~~~~-l~~~l~~~~~~~~~~~i~ 135 (331)
++++-|++.+.+ ++++++.+.+.+..+.+.
T Consensus 89 l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 89 LLLNPDTVVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred EEEcCCeeeChhHHHHHHHHHHhCCCCeEee
Confidence 999999876655 899999988877665544
No 319
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=74.49 E-value=42 Score=33.94 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred CceeCCcc--hHHHHHHHHHHcCCC----EEEEEeccChH-------H-------HHHHHHHhhhccCeEEEEeeCC-cc
Q 020113 25 LVDFANKP--MILHQIEALKAVGVT----EVVLAINYQPE-------V-------MLNFLKEFEKKLEIKITCSQET-EP 83 (331)
Q Consensus 25 llpi~g~p--li~~~l~~l~~~gi~----~i~iv~~~~~~-------~-------i~~~~~~~~~~~~~~v~~~~~~-~~ 83 (331)
++|..|.+ ++..+++.+.+.... +|+|+-+...+ . -.+.++++.++.++. ++..+ ..
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~--yi~r~~n~ 213 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN--YITRPRNV 213 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcE--EEECCCCC
Confidence 45667875 677889888775422 56665432100 0 112333333333443 34332 23
Q ss_pred cCChHHHHHHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 84 LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 84 ~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+-++++..+++..+.+ .++++.+|.+...+ +++++..+.+..
T Consensus 214 ~~KAgnLN~al~~a~gd---~Il~lDAD~v~~pd~L~~~v~~f~~dp 257 (713)
T TIGR03030 214 HAKAGNINNALKHTDGE---LILIFDADHVPTRDFLQRTVGWFVEDP 257 (713)
T ss_pred CCChHHHHHHHHhcCCC---EEEEECCCCCcChhHHHHHHHHHHhCC
Confidence 34577888888776553 89999999977666 678888775543
No 320
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.79 E-value=33 Score=28.27 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=56.4
Q ss_pred ceeCCc-chHHHHHHHHHHcC--CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 26 VDFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+|.-|. +.|..+|+.+.+.- ..+++|+-+...+...+.+.+ ..+.+.. ...|.+.+...+......+
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~--~~~g~~~a~n~g~~~a~~~-- 74 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVIS--SPKGRARQMNAGAAAARGD-- 74 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEe--CCcCHHHHHHHHHHhccCC--
Confidence 455454 57888888887653 346666654433445555544 1233333 2346667777777776543
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhcCC
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~ 130 (331)
.++++..|.....+ ++.++..+.+.+.
T Consensus 75 -~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 75 -WLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred -EEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 88899999966544 6776666554443
No 321
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=69.07 E-value=54 Score=29.28 Aligned_cols=98 Identities=8% Similarity=0.035 Sum_probs=57.2
Q ss_pred eeCCc-chHHHHHHHHHHc----CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee-CCcccCChHHHHHHHhhccCC
Q 020113 27 DFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 27 pi~g~-pli~~~l~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~-~~~~~G~~~al~~~~~~~~~~ 100 (331)
|..|. ..|..+++.+.+. ...+|+|+-+...+...+.+.++..+.-....... .....|-+.++..++.....+
T Consensus 38 PayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~gd 117 (306)
T PRK13915 38 PALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATTGD 117 (306)
T ss_pred ecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcCCC
Confidence 33344 6788888888752 23577776554445555555553211000000111 133457788888887765443
Q ss_pred CCCcEEEEeCCee-cc-ccHHHHHHHHhh
Q 020113 101 SGEPFFVLNSDVI-SE-YPLKQMIEFHRG 127 (331)
Q Consensus 101 ~~~~~lv~~~D~i-~~-~~l~~~l~~~~~ 127 (331)
.++++.+|.. .+ ..+..+++.+..
T Consensus 118 ---~vv~lDaD~~~~~p~~l~~l~~~l~~ 143 (306)
T PRK13915 118 ---IVVFVDADLINFDPMFVPGLLGPLLT 143 (306)
T ss_pred ---EEEEEeCccccCCHHHHHHHHHHHHh
Confidence 8899999995 44 447888887653
No 322
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=66.99 E-value=61 Score=26.27 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=56.8
Q ss_pred ceeCCc-chHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeC---CcccCChHHHHHHHhhccCC
Q 020113 26 VDFANK-PMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE---TEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~---~~~~G~~~al~~~~~~~~~~ 100 (331)
+|.-|. ..|..+|+.+.+.. -.+|+|+-+...+...+.++ +. .....+.++.. ....|-+.++..++......
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~-~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~ 80 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LA-ITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQI 80 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-he-ecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhh
Confidence 454443 68889999888754 23566655544444555554 11 11123444432 23457788888888876421
Q ss_pred --------CCCcEEEEeCCeecccc-HHHHHHHH
Q 020113 101 --------SGEPFFVLNSDVISEYP-LKQMIEFH 125 (331)
Q Consensus 101 --------~~~~~lv~~~D~i~~~~-l~~~l~~~ 125 (331)
..+.++++.+|.....+ +..+...+
T Consensus 81 ~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 81 LIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred ccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 11268899999976655 66655544
No 323
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=66.48 E-value=56 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.4
Q ss_pred CeEEEEeCCCCcccCC
Q 020113 1 MKALILVGGFGTRLRP 16 (331)
Q Consensus 1 m~avIlA~G~g~rl~p 16 (331)
|+.+|||.|.||.|..
T Consensus 1 ~ki~VlaSG~GSNlqa 16 (200)
T COG0299 1 KKIAVLASGNGSNLQA 16 (200)
T ss_pred CeEEEEEeCCcccHHH
Confidence 5778999999999854
No 324
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=65.04 E-value=18 Score=33.19 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=56.5
Q ss_pred eeCCcc---hHHHHHHHHHHcC-CCEEEEEeccCh--HHHHHHHHHhhhc-cCeEEEEeeCCcccC--ChHHHHHHHhhc
Q 020113 27 DFANKP---MILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKK-LEIKITCSQETEPLG--TAGPLALARDKL 97 (331)
Q Consensus 27 pi~g~p---li~~~l~~l~~~g-i~~i~iv~~~~~--~~i~~~~~~~~~~-~~~~v~~~~~~~~~G--~~~al~~~~~~~ 97 (331)
-+|-|| -+.-++..+.+.+ ++.++++++.+. +....++..+.-. ....+....+..+.+ ++..+....+.+
T Consensus 9 I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl 88 (383)
T COG0381 9 IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVL 88 (383)
T ss_pred EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHH
Confidence 344455 4556678888877 999999999887 6667777765322 122222221122211 233344444444
Q ss_pred cCCCCCcEEEEeCCeeccccHHHHHHHHhhc
Q 020113 98 IDDSGEPFFVLNSDVISEYPLKQMIEFHRGR 128 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~ 128 (331)
....+ +++++.||+-+. |...+..+..+
T Consensus 89 ~~~kP-D~VlVhGDT~t~--lA~alaa~~~~ 116 (383)
T COG0381 89 EEEKP-DLVLVHGDTNTT--LAGALAAFYLK 116 (383)
T ss_pred HhhCC-CEEEEeCCcchH--HHHHHHHHHhC
Confidence 55555 899999998654 44344444433
No 325
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=59.49 E-value=75 Score=24.02 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCEEEEEeccC-hHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe--e
Q 020113 37 QIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--I 113 (331)
Q Consensus 37 ~l~~l~~~gi~~i~iv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~--i 113 (331)
+|+.+.+...-++++..... .....+.+.. . ..+.+..| ...+.++.+..+......... .++++..|. +
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~----~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~-~vvliGsD~P~l 73 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWL-P----SGFSFFPQ-QGGDLGERMANAFQQAARGYE-PVVLIGSDCPDL 73 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH------TTSEEEE---SSSHHHHHHHHHHHHHTT-S-EEEEE-SS-TT-
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhcccc-C----CCCEEeec-CCCCHHHHHHHHHHHHHcCCC-cEEEEcCCCCCC
Confidence 45667776655666665443 3333332211 1 12333444 344667788888887733333 999999999 6
Q ss_pred ccccHHHHHHHHhhcCCceEEEecCCCCceEEEE
Q 020113 114 SEYPLKQMIEFHRGRGGEASIMVDEPSKYGVVVM 147 (331)
Q Consensus 114 ~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~v~~ 147 (331)
....+.++++...+. ++++....-.+|..+-+
T Consensus 74 ~~~~l~~A~~~L~~~--d~VlgPa~DGGy~LiG~ 105 (122)
T PF09837_consen 74 TPDDLEQAFEALQRH--DVVLGPAEDGGYYLIGL 105 (122)
T ss_dssp -HHHHHHHHHHTTT---SEEEEEBTTSSEEEEEE
T ss_pred CHHHHHHHHHHhccC--CEEEeeccCCCEEEEec
Confidence 666788877765443 44443333334433333
No 326
>PRK10481 hypothetical protein; Provisional
Probab=56.86 E-value=1.2e+02 Score=25.70 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~ 112 (331)
+|...+..+... .++-|++- ..+.+.++.++|... +.++.+.......++.+.+..+...+..... +++++.|--
T Consensus 118 ~i~~lv~Al~~g--~riGVitP-~~~qi~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G 192 (224)
T PRK10481 118 ILPPLVAAIVGG--HQVGVIVP-VEEQLAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLG 192 (224)
T ss_pred hHHHHHHHhcCC--CeEEEEEe-CHHHHHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCC
Confidence 555666665554 67777774 355677777777655 6666555444334677778877777765444 899999988
Q ss_pred eccccHHHHHHHHh
Q 020113 113 ISEYPLKQMIEFHR 126 (331)
Q Consensus 113 i~~~~l~~~l~~~~ 126 (331)
+.. ...+.++...
T Consensus 193 ~~~-~~~~~le~~l 205 (224)
T PRK10481 193 YHQ-RHRDLLQKAL 205 (224)
T ss_pred cCH-HHHHHHHHHH
Confidence 876 5566666543
No 327
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=56.77 E-value=30 Score=24.95 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=24.3
Q ss_pred CCceEeCCEEcCCCEECCCcEEccceEECCCcEECcccEEcCcEEccCeEEccCc
Q 020113 270 KHACISSSIIGWHSTVGRWARVENMTILGEDVHVADEVYSNGAVVLPHKEIKSSI 324 (331)
Q Consensus 270 ~~~~i~~s~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 324 (331)
.++.|++.+-.+.+.|... +.+.....+.+.|...+.+.+.+-.+...+.++.
T Consensus 41 ~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga 93 (101)
T PF04519_consen 41 GNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGA 93 (101)
T ss_pred CCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCC
Confidence 4455554444444444322 3332223244556666655555555444444443
No 328
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=55.36 E-value=1.6e+02 Score=26.67 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=53.6
Q ss_pred CceeCCcc-hHHHHHHHHHHcC----CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCc----ccC----------
Q 020113 25 LVDFANKP-MILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE----PLG---------- 85 (331)
Q Consensus 25 llpi~g~p-li~~~l~~l~~~g----i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~----~~G---------- 85 (331)
++...||| -+..+|++|.++. -.+++|...-..++..+.+..+. ..+.++.+.. ..|
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~----~~i~~i~~~~~~~~~~~~~~~~~~y~~ 80 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG----DGVTHIQHPPISIKNVNPPHKFQGYYR 80 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc----cccEEEEcccccccccCcccccchhhH
Confidence 34457998 7999999999873 45666665433344555555532 1222222211 111
Q ss_pred ChH----HHHHHHhhccCCCCCcEEEEeCCeeccccH----HHHHHHHhhcC
Q 020113 86 TAG----PLALARDKLIDDSGEPFFVLNSDVISEYPL----KQMIEFHRGRG 129 (331)
Q Consensus 86 ~~~----al~~~~~~~~~~~~~~~lv~~~D~i~~~~l----~~~l~~~~~~~ 129 (331)
.+. ++-.+...... +.++++-.|++...++ .++++.+++..
T Consensus 81 ia~hyk~aln~vF~~~~~---~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~ 129 (334)
T cd02514 81 IARHYKWALTQTFNLFGY---SFVIILEDDLDIAPDFFSYFQATLPLLEEDP 129 (334)
T ss_pred HHHHHHHHHHHHHHhcCC---CEEEEECCCCccCHhHHHHHHHHHHHHhcCC
Confidence 122 33333333222 2899999999887774 44555544333
No 329
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=54.17 E-value=1.2e+02 Score=29.03 Aligned_cols=95 Identities=24% Similarity=0.359 Sum_probs=58.0
Q ss_pred CCCCCCceeC------CcchHHHHHHHHHH---cCCCEEEEEeccCh-HHHHHHHHH----hhhccCe--EEEEeeCCc-
Q 020113 20 SVPKPLVDFA------NKPMILHQIEALKA---VGVTEVVLAINYQP-EVMLNFLKE----FEKKLEI--KITCSQETE- 82 (331)
Q Consensus 20 ~~pK~llpi~------g~pli~~~l~~l~~---~gi~~i~iv~~~~~-~~i~~~~~~----~~~~~~~--~v~~~~~~~- 82 (331)
.+||.|+|+- -.|+=+|+.+...- .|..++...++++. +.+++.+.+ +.+++++ ++.|..|..
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~s 244 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPS 244 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCC
Confidence 4799999984 23899999996553 35667777776553 455555544 3334443 344444321
Q ss_pred ----------------------ccCChHHHHHHHhhccCCCCCcEEEEeCCeecccc
Q 020113 83 ----------------------PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP 117 (331)
Q Consensus 83 ----------------------~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~ 117 (331)
..|--+||...++.+..+ -+++=+-|.+....
T Consensus 245 TDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~ldaD---iIFIKNIDNVvpd~ 298 (513)
T PF14134_consen 245 TDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDLDAD---IIFIKNIDNVVPDR 298 (513)
T ss_pred CCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccccCC---EEEEeCccccCCcc
Confidence 123446777777776553 56677888866443
No 330
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=53.30 E-value=26 Score=23.58 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~ 66 (331)
|+.|+++.++.+.+.|+..+.+.+.........++.+
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH
Confidence 5679999999999999999999998777666666555
No 331
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.05 E-value=1.5e+02 Score=25.37 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEee-CCc------ccCChHHHHHHHhhccCCCCCcE
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ-ETE------PLGTAGPLALARDKLIDDSGEPF 105 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~-~~~------~~G~~~al~~~~~~~~~~~~~~~ 105 (331)
-..-.++.|...|+++|.+++-|.. ++.+.+.++....|+++.-.. ... ..=+.+++......+...+. +-
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~-~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a-DA 184 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTP-ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA-DA 184 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcH-HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC-CE
Confidence 4566778888899999999998754 344455554455566654331 111 11134566665555533333 78
Q ss_pred EEEeCCeeccccHHHHHHHH
Q 020113 106 FVLNSDVISEYPLKQMIEFH 125 (331)
Q Consensus 106 lv~~~D~i~~~~l~~~l~~~ 125 (331)
+++.|-.+...++-+-++..
T Consensus 185 ifisCTnLrt~~vi~~lE~~ 204 (239)
T TIGR02990 185 LFLSCTALRAATCAQRIEQA 204 (239)
T ss_pred EEEeCCCchhHHHHHHHHHH
Confidence 88889888777666655543
No 332
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=52.04 E-value=63 Score=24.09 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G 85 (331)
-+....+.+.+.++++|++.++++ .+.+..|+.+.-+..++++.-+.+.-|.|
T Consensus 44 ~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~G 98 (112)
T cd01025 44 NIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPVG 98 (112)
T ss_pred CHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCCC
Confidence 567777777777899999999876 47888888886665666666555444444
No 333
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=51.30 E-value=1.8e+02 Score=26.07 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=61.0
Q ss_pred eCCcchHHHHHHHHHH--cCCCEEEEEeccCh---HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 28 FANKPMILHQIEALKA--VGVTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 28 i~g~pli~~~l~~l~~--~gi~~i~iv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
+.+..-++.+++.+.. -+.++|.++.++.. ..+.+.+++..+..|.++.-..-+.... +-.+...+....
T Consensus 139 vsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~nd----i~~a~~~l~g~~- 213 (322)
T COG2984 139 VSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVND----IPRAVQALLGKV- 213 (322)
T ss_pred cCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccc----cHHHHHHhcCCC-
Confidence 3455668888886665 35889978887655 4566666666667787775443322212 222223333222
Q ss_pred CcEEEEeCCeeccccHHHHHHHHhhcCC
Q 020113 103 EPFFVLNSDVISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~l~~~l~~~~~~~~ 130 (331)
+.+..+.|.....-+..+++...+.+-
T Consensus 214 -d~i~~p~dn~i~s~~~~l~~~a~~~ki 240 (322)
T COG2984 214 -DVIYIPTDNLIVSAIESLLQVANKAKI 240 (322)
T ss_pred -cEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 899999999777678888887665543
No 334
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=49.56 E-value=60 Score=29.48 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred ceeCCcc---hHHHHHHHHHHc-CCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccC----ChHHHHHHHhhc
Q 020113 26 VDFANKP---MILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLG----TAGPLALARDKL 97 (331)
Q Consensus 26 lpi~g~p---li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G----~~~al~~~~~~~ 97 (331)
+-++.|| ++..+++.|.+. +++..+++++.+...+.+.++.+.-. .++.......+.+ ++..+....+.+
T Consensus 5 ~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 82 (365)
T TIGR00236 5 IVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLP--PDYDLNIMSPGQTLGEITSNMLEGLEELL 82 (365)
T ss_pred EEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCC--CCeeeecCCCCCCHHHHHHHHHHHHHHHH
Confidence 3345555 778888888875 68888999998876555555543211 1122221111112 222333444444
Q ss_pred cCCCCCcEEEEeCCe
Q 020113 98 IDDSGEPFFVLNSDV 112 (331)
Q Consensus 98 ~~~~~~~~lv~~~D~ 112 (331)
....+ +++++.||.
T Consensus 83 ~~~~p-Div~~~gd~ 96 (365)
T TIGR00236 83 LEEKP-DIVLVQGDT 96 (365)
T ss_pred HHcCC-CEEEEeCCc
Confidence 55555 889999986
No 335
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=49.54 E-value=3e+02 Score=27.91 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCceeCCcch------HHHHHHHHHHcCC---CEEEEEeccChHHHH----HHHHHhhhcc--CeEEEEeeCCc-ccCCh
Q 020113 24 PLVDFANKPM------ILHQIEALKAVGV---TEVVLAINYQPEVML----NFLKEFEKKL--EIKITCSQETE-PLGTA 87 (331)
Q Consensus 24 ~llpi~g~pl------i~~~l~~l~~~gi---~~i~iv~~~~~~~i~----~~~~~~~~~~--~~~v~~~~~~~-~~G~~ 87 (331)
-++|+.|.+. |+-+++.+.+.+. -+++++.+...+++. +.+.++.+++ +.++.+..... ...-+
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 4677788863 6666777665542 256666654333332 1233333332 23455554322 22234
Q ss_pred HHHHHHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhh
Q 020113 88 GPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRG 127 (331)
Q Consensus 88 ~al~~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 127 (331)
+.+....+......+ .++++.+|.+...+ +.+++..+..
T Consensus 208 GNl~~~~~~~~~~~e-yivvLDADs~m~~d~L~~lv~~m~~ 247 (691)
T PRK05454 208 GNIADFCRRWGGAYD-YMVVLDADSLMSGDTLVRLVRLMEA 247 (691)
T ss_pred HHHHHHHHhcCCCcC-EEEEEcCCCCCCHHHHHHHHHHHhh
Confidence 455555555443333 99999999976665 7888887754
No 336
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.45 E-value=1.1e+02 Score=25.30 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G 85 (331)
-|+..++.+.+.++++|++.+++. .+....|+.+.-+.++++++-+...-|.|
T Consensus 122 ~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRlA~GiP~G 176 (195)
T TIGR00615 122 TIAALLKRLQEESVKEVILATNPTVEGEATALYIARLLQPFGVKVTRIASGLPVG 176 (195)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEeeeecCCCC
Confidence 567777777777899999999876 47888888886665677776555544544
No 337
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=48.23 E-value=1.6e+02 Score=24.69 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCee-cccc-HHHHHHHHhhcCC
Q 020113 59 VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYP-LKQMIEFHRGRGG 130 (331)
Q Consensus 59 ~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i-~~~~-l~~~l~~~~~~~~ 130 (331)
+..+++.+.....+..+.+.......+.+.+.-.+++.-+.+ .++.+--|+. .+.+ +.++++.+.+...
T Consensus 15 ~~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~~~---ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 15 ECLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAKAK---YLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp HHHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG--SS---EEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCCCC---EEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 344455443222233444454445567778888887775443 7888999994 4556 6777777755433
No 338
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=47.50 E-value=85 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=11.9
Q ss_pred CeEEEEeCCCCcccCC
Q 020113 1 MKALILVGGFGTRLRP 16 (331)
Q Consensus 1 m~avIlA~G~g~rl~p 16 (331)
|+..|||.|.|+.+.+
T Consensus 1 ~riail~sg~gs~~~~ 16 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA 16 (190)
T ss_pred CeEEEEEcCCChhHHH
Confidence 5678888887777754
No 339
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=46.56 E-value=55 Score=25.73 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.3
Q ss_pred cCCCceEe
Q 020113 242 LATGSNII 249 (331)
Q Consensus 242 i~~~~~i~ 249 (331)
+++++.+.
T Consensus 26 i~~g~~f~ 33 (146)
T COG1664 26 IGAGTTFK 33 (146)
T ss_pred EecCCEEE
Confidence 34444443
No 340
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=45.77 E-value=61 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.1
Q ss_pred CeEEEEeCCCCcccCC
Q 020113 1 MKALILVGGFGTRLRP 16 (331)
Q Consensus 1 m~avIlA~G~g~rl~p 16 (331)
|+.+|+|+|.|+-+.+
T Consensus 2 ~ki~vl~sg~gs~~~~ 17 (200)
T PRK05647 2 KRIVVLASGNGSNLQA 17 (200)
T ss_pred ceEEEEEcCCChhHHH
Confidence 5788888887777644
No 341
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=45.42 E-value=42 Score=30.59 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=42.4
Q ss_pred cccCCCCCCCCCCCceeCCcc-hHHHHHHHHHHc-CCCEEEEEeccCh--HHHHHHHHH
Q 020113 12 TRLRPLTLSVPKPLVDFANKP-MILHQIEALKAV-GVTEVVLAINYQP--EVMLNFLKE 66 (331)
Q Consensus 12 ~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~-gi~~i~iv~~~~~--~~i~~~~~~ 66 (331)
..++|+....+.-++.+-+|| .|.++|+.|+++ ||++..++..++. +++.+.++.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 345666555566677778996 899999999996 7999999998774 677777765
No 342
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=43.55 E-value=31 Score=31.92 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=28.1
Q ss_pred EEcCCCEECCCcEEccceEE----CCCcEECcccEEcCcEEccCeEEc
Q 020113 278 IIGWHSTVGRWARVENMTIL----GEDVHVADEVYSNGAVVLPHKEIK 321 (331)
Q Consensus 278 ~i~~~~~ig~~~~i~~~~~i----~~~~~i~~~~~i~~~~v~~~~~i~ 321 (331)
.|..++..|.|+++.+.++| ++.-.|-+|+++.+++|..+..|-
T Consensus 449 tVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 449 TVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred EEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEecccccc
Confidence 45566666666666663333 334567778888888887776654
No 343
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=43.47 E-value=1.1e+02 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHh
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~ 67 (331)
++|...+......|+++++|+.+...+...+.++++
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 678888998889999999998876656677777764
No 344
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=43.42 E-value=1.9e+02 Score=26.65 Aligned_cols=82 Identities=9% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEE
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~l 106 (331)
-|+-.+..+-+.+.+.|.++++|+++..-.. +.+.+.+..++.++++.....-++.-+.+.+..+.+.+..... +++
T Consensus 12 fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~I 90 (379)
T TIGR02638 12 FGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGA-DYL 90 (379)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEE
Confidence 4666788888888888989999999754321 2223332222334554443333344456777777776655444 566
Q ss_pred EEeCC
Q 020113 107 VLNSD 111 (331)
Q Consensus 107 v~~~D 111 (331)
|.-|-
T Consensus 91 iaiGG 95 (379)
T TIGR02638 91 IAIGG 95 (379)
T ss_pred EEeCC
Confidence 64433
No 345
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=43.24 E-value=2.2e+02 Score=24.58 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.2
Q ss_pred CceeCCcc--hHHHHHHHHHH----cC---CCEEEEEeccChHHHHH----HHHHhhhcc--CeEEEEeeCCcccCC-hH
Q 020113 25 LVDFANKP--MILHQIEALKA----VG---VTEVVLAINYQPEVMLN----FLKEFEKKL--EIKITCSQETEPLGT-AG 88 (331)
Q Consensus 25 llpi~g~p--li~~~l~~l~~----~g---i~~i~iv~~~~~~~i~~----~~~~~~~~~--~~~v~~~~~~~~~G~-~~ 88 (331)
|+|+.|.+ ++.-+|+.+.+ .+ -=+|+++-....+++.. .+.++.+++ ...+.+....+..|. +.
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag 83 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG 83 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence 57888875 46667766543 22 23554443322222221 122221111 345666555444443 44
Q ss_pred HHHHHHhhccCCCCCcEEEEeCCeecccc-HHHHHHHHhhcC
Q 020113 89 PLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGRG 129 (331)
Q Consensus 89 al~~~~~~~~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 129 (331)
.+...+....... |.++++.+|.....+ +..++..+.+..
T Consensus 84 ~l~~~~~~~~~~~-~~i~~~DaD~~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 84 NIADFCRRWGSRY-DYMVVLDADSLMSGDTIVRLVRRMEANP 124 (254)
T ss_pred HHHHHHHHhCCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 5555554432222 289999999976655 788888876433
No 346
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.80 E-value=1.3e+02 Score=24.22 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=13.9
Q ss_pred ChHHHHHHHhhccCCCCCcEEEEeCCeec
Q 020113 86 TAGPLALARDKLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 86 ~~~al~~~~~~~~~~~~~~~lv~~~D~i~ 114 (331)
...++..++..++-.. .=.+.-||+++
T Consensus 95 ~~~~fr~Al~~m~l~~--~~vvmVGDqL~ 121 (175)
T COG2179 95 FGRAFRRALKEMNLPP--EEVVMVGDQLF 121 (175)
T ss_pred cHHHHHHHHHHcCCCh--hHEEEEcchhh
Confidence 3456666666665433 22344466654
No 347
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=42.70 E-value=3.2e+02 Score=26.43 Aligned_cols=101 Identities=7% Similarity=0.050 Sum_probs=55.8
Q ss_pred CceeCCc-chHHHHHHHH-HHcCCC--EEEEEeccChHHHHHHHHHhhhcc-CeEEEEeeCCcccCChHHHHHHHhhc--
Q 020113 25 LVDFANK-PMILHQIEAL-KAVGVT--EVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKL-- 97 (331)
Q Consensus 25 llpi~g~-pli~~~l~~l-~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~G~~~al~~~~~~~-- 97 (331)
++|--|. ..|..+++.+ .+.... +|+++...+.+...+.+.++..++ ++++.......+.+-+.++..+.+.+
T Consensus 71 lIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~ 150 (504)
T PRK14716 71 FVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFA 150 (504)
T ss_pred EEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 4444454 7899999975 444322 566666444444444555443333 24433333334455677887776654
Q ss_pred ----cCCCCCcEEEEeCCeeccccHHHHHHHH
Q 020113 98 ----IDDSGEPFFVLNSDVISEYPLKQMIEFH 125 (331)
Q Consensus 98 ----~~~~~~~~lv~~~D~i~~~~l~~~l~~~ 125 (331)
.....|.+++..+|.+...+.-+.+..+
T Consensus 151 ~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 151 FERERGIRFAIIVLHDAEDVIHPLELRLYNYL 182 (504)
T ss_pred hhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh
Confidence 1111138889999997776643344433
No 348
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=42.68 E-value=1.9e+02 Score=25.63 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHc--C---CCEEEEEeccC-hHHHHHHHHHhhhccC-eEEEEeeCCcccCChHHHHHHHhhccCCCCCcE
Q 020113 33 MILHQIEALKAV--G---VTEVVLAINYQ-PEVMLNFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (331)
Q Consensus 33 li~~~l~~l~~~--g---i~~i~iv~~~~-~~~i~~~~~~~~~~~~-~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~ 105 (331)
|++-+++.|.+- + ++.=++|+... .+...+..-++..+.+ -.+.+..+....|-++++..++-....+ ..
T Consensus 85 mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~---~i 161 (323)
T KOG2977|consen 85 MLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQ---KI 161 (323)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCc---eE
Confidence 899999988862 2 34444444433 3555555555443334 3455556666778888888777777654 77
Q ss_pred EEEeCCeecc
Q 020113 106 FVLNSDVISE 115 (331)
Q Consensus 106 lv~~~D~i~~ 115 (331)
++..+|--+.
T Consensus 162 lfadAdGaTk 171 (323)
T KOG2977|consen 162 LFADADGATK 171 (323)
T ss_pred EEEcCCCCcc
Confidence 8888887544
No 349
>PRK13844 recombination protein RecR; Provisional
Probab=41.17 E-value=1.8e+02 Score=24.20 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G 85 (331)
-|+..++.+.+.++++|++.+++. .+....|+.+.-+. +++++-+...-|.|
T Consensus 126 ~i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~yi~~~lk~-~vkvtRlA~GiP~G 179 (200)
T PRK13844 126 KLDILQQIIADRKIDEVILAISPTVEGETTAHFISQMIAK-DIKISRIGFGVPFG 179 (200)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHHHHhcC-CCcEEeeeecCcCC
Confidence 466777777777899999999875 47888898886655 77776555544544
No 350
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=41.10 E-value=90 Score=26.57 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccChH--HHHHHHHHhhhc-cCeEEEEe
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQPE--VMLNFLKEFEKK-LEIKITCS 78 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~~--~i~~~~~~~~~~-~~~~v~~~ 78 (331)
++.-++++|.+.|+++++++-++... .+....+++..+ .+..+.+.
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 66777788889999999999887653 466666666655 56666544
No 351
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=38.41 E-value=1.4e+02 Score=25.91 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccCh-HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D 111 (331)
.+..+-+-|.+.+.++++++++.+. +...+.+.+..+..+.++.+........+.+.+......+...+. ++++.-|-
T Consensus 6 a~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~ii~vGg 84 (250)
T PF13685_consen 6 ALDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDA-DLIIGVGG 84 (250)
T ss_dssp -GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT---EEEEEES
T ss_pred HHHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCC-CEEEEeCC
Confidence 4555666677777899999998774 444444444334445666544433333567777777777743332 45543332
Q ss_pred -eeccccHHHHHHHHhhcCCceEEE
Q 020113 112 -VISEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 112 -~i~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
.+ .|+.++..+.. +.+...+
T Consensus 85 G~i--~D~~K~~A~~~--~~p~isV 105 (250)
T PF13685_consen 85 GTI--IDIAKYAAFEL--GIPFISV 105 (250)
T ss_dssp HHH--HHHHHHHHHHH--T--EEEE
T ss_pred cHH--HHHHHHHHHhc--CCCEEEe
Confidence 23 24566666543 3444444
No 352
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=37.59 E-value=2.3e+02 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.4
Q ss_pred eEEEEeCCCCcccCC
Q 020113 2 KALILVGGFGTRLRP 16 (331)
Q Consensus 2 ~avIlA~G~g~rl~p 16 (331)
+.+|||.|.|+.|..
T Consensus 1 ki~vl~Sg~Gsn~~a 15 (207)
T PLN02331 1 KLAVFVSGGGSNFRA 15 (207)
T ss_pred CEEEEEeCCChhHHH
Confidence 357889999988854
No 353
>PRK00076 recR recombination protein RecR; Reviewed
Probab=36.64 E-value=2.3e+02 Score=23.57 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G 85 (331)
-+...++.+ +.++++|++.+++. .+....|+.+.-+..+++++-+...-|.|
T Consensus 122 ~i~~L~~ri-~~~v~EVIlA~~pt~EGe~Ta~yi~~~lk~~~ikvtRiA~GiP~G 175 (196)
T PRK00076 122 NIDELLERL-DGEVKEVILATNPTVEGEATAHYIARLLKPLGVKVTRLAHGVPVG 175 (196)
T ss_pred CHHHHHHHH-hCCCCEEEEeCCCCchHHHHHHHHHHHHHHcCCCeeeeeeCCCCC
Confidence 345555666 55699999999876 47888888886665666676555554544
No 354
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=35.96 E-value=78 Score=22.09 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=35.6
Q ss_pred CcccCChHHHHHHHhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCceEEEecCCC
Q 020113 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEASIMVDEPS 140 (331)
Q Consensus 81 ~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~~~~~~ 140 (331)
+-|.|+++..+...+.++... .++|....-+.-.+..+.++.+++.+-...-++++-+
T Consensus 7 D~PPGTgD~~l~~~~~~~~~g--~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs 64 (81)
T PF10609_consen 7 DLPPGTGDEHLTLMQYLPIDG--AIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS 64 (81)
T ss_dssp E--SCSSSHHHHHHHHH--SE--EEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-
T ss_pred eCCCCCCcHHHHHHHhCCCCe--EEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 456688888888888886432 6677777778888888999988877665554455543
No 355
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=35.87 E-value=1.4e+02 Score=23.45 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=4.4
Q ss_pred CCcEECcccEE
Q 020113 299 EDVHVADEVYS 309 (331)
Q Consensus 299 ~~~~i~~~~~i 309 (331)
....|.+++.+
T Consensus 106 ~~i~v~~Ga~f 116 (146)
T COG1664 106 KEITVEEGAIF 116 (146)
T ss_pred cEEEEccCCEE
Confidence 33344444433
No 356
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=35.80 E-value=3.2e+02 Score=25.54 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.|.++++|+++..-.. ..+.+.+..+..++.+.....-.+.-+.+.+..+.+....... +++|
T Consensus 7 G~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~-D~II 85 (414)
T cd08190 7 GPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQF-DAFV 85 (414)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 555677777888888889999998764221 1122222112234444332222233356777777777765444 5665
Q ss_pred EeC
Q 020113 108 LNS 110 (331)
Q Consensus 108 ~~~ 110 (331)
.-|
T Consensus 86 aiG 88 (414)
T cd08190 86 AVG 88 (414)
T ss_pred EeC
Confidence 443
No 357
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=34.90 E-value=3.4e+02 Score=24.90 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=46.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++++-+.+.+.|.++++|+++..... ..+.+.+..+..+..+.....-++.-+.+.+..+.+.+..... +++|
T Consensus 10 G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 88 (374)
T cd08189 10 GSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGC-DAIL 88 (374)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 566788888888888889999998754321 1122222122234444433333344466777777777655444 6666
Q ss_pred EeCC
Q 020113 108 LNSD 111 (331)
Q Consensus 108 ~~~D 111 (331)
.-|-
T Consensus 89 aiGG 92 (374)
T cd08189 89 AVGG 92 (374)
T ss_pred EeCC
Confidence 4443
No 358
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=34.16 E-value=3.3e+02 Score=25.07 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=45.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.|.++++|+++..... ..+.+.+..+..++.+.....-.+.-+.+.+..+.+.++.... +++|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~-D~II 90 (377)
T cd08176 12 GAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGC-DFII 90 (377)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 666778888888888888999998754322 2222332222234444333222233455666666666654444 6666
Q ss_pred EeCC
Q 020113 108 LNSD 111 (331)
Q Consensus 108 ~~~D 111 (331)
.-|-
T Consensus 91 avGG 94 (377)
T cd08176 91 SIGG 94 (377)
T ss_pred EeCC
Confidence 4443
No 359
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=33.85 E-value=3.7e+02 Score=24.54 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChH---HHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~---~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~l 106 (331)
|.-.++.+-+.+.+.|.++++|+++.... .+.+.+++ .+..+.....-++.-+.+.+..+.+.+..... +++
T Consensus 7 G~g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~I 81 (367)
T cd08182 7 GRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKP----LGTLVVVFDDVQPNPDLEDLAAGIRLLREFGP-DAV 81 (367)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHH----cCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCc-CEE
Confidence 44456777777787888899999876543 33334332 23444333222333456667777666655444 666
Q ss_pred EEeCC
Q 020113 107 VLNSD 111 (331)
Q Consensus 107 v~~~D 111 (331)
|.-|-
T Consensus 82 IavGG 86 (367)
T cd08182 82 LAVGG 86 (367)
T ss_pred EEeCC
Confidence 64444
No 360
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.10 E-value=2.4e+02 Score=22.03 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHcCCC--EEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEe
Q 020113 32 PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (331)
Q Consensus 32 pli~~~l~~l~~~gi~--~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~ 109 (331)
..|..+++.+.+.... +++|+-+...+...+.+..+.... ..+.........|...+...+......+ .++++.
T Consensus 16 ~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~d 91 (291)
T COG0463 16 EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD-VRVIRLINERNGGLGAARNAGLEYARGD---YIVFLD 91 (291)
T ss_pred hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc-ceEEEeecccCCChHHHHHhhHHhccCC---EEEEEc
Confidence 6888888888876432 555554444455555555543221 1233333455678888888888888763 888899
Q ss_pred CCeecccc-HHHHHHH
Q 020113 110 SDVISEYP-LKQMIEF 124 (331)
Q Consensus 110 ~D~i~~~~-l~~~l~~ 124 (331)
+|.+ ..+ +..+.+.
T Consensus 92 ~d~~-~~~~~~~~~~~ 106 (291)
T COG0463 92 ADDQ-HPPELIPLVAA 106 (291)
T ss_pred cCCC-CCHHHHHHHHH
Confidence 9998 654 4443443
No 361
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=32.79 E-value=73 Score=22.53 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=23.9
Q ss_pred ceeCCcchHHHHHHHHHH--cCCCEEEEEec
Q 020113 26 VDFANKPMILHQIEALKA--VGVTEVVLAIN 54 (331)
Q Consensus 26 lpi~g~pli~~~l~~l~~--~gi~~i~iv~~ 54 (331)
+-+++||+..|.+..+.+ .|.+++.+-..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 347899999999998886 47899998774
No 362
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=32.70 E-value=2.5e+02 Score=22.26 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEE-eCCe
Q 020113 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL-NSDV 112 (331)
Q Consensus 34 i~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~-~~D~ 112 (331)
=+++++.|.+.|++.++-+.+.....+.+.+.+ ..++++.....+. .+.....+........ -++++ .|--
T Consensus 3 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~---~~~i~~v~~rhE~---~A~~mA~gyar~tg~~--~v~~~t~GpG 74 (164)
T cd07039 3 ADVIVETLENWGVKRVYGIPGDSINGLMDALRR---EGKIEFIQVRHEE---AAAFAASAEAKLTGKL--GVCLGSSGPG 74 (164)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhh---cCCCeEEEeCCHH---HHHHHHHHHHHHhCCC--EEEEECCCCc
Confidence 367889999999999999998776555555532 1234443332221 2222222333333321 23333 3333
Q ss_pred eccccHHHHHHHHhhcCC
Q 020113 113 ISEYPLKQMIEFHRGRGG 130 (331)
Q Consensus 113 i~~~~l~~~l~~~~~~~~ 130 (331)
+++ -+..+.+.+.++-+
T Consensus 75 ~~n-~~~~l~~A~~~~~P 91 (164)
T cd07039 75 AIH-LLNGLYDAKRDRAP 91 (164)
T ss_pred HHH-HHHHHHHHHhcCCC
Confidence 443 35667777665554
No 363
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=32.64 E-value=1.1e+02 Score=26.86 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=6.0
Q ss_pred cEEEEeCCe
Q 020113 104 PFFVLNSDV 112 (331)
Q Consensus 104 ~~lv~~~D~ 112 (331)
+++++.|=+
T Consensus 162 Dlivlagym 170 (280)
T TIGR00655 162 DLVVLAKYM 170 (280)
T ss_pred CEEEEeCch
Confidence 677776655
No 364
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=32.20 E-value=2.2e+02 Score=21.49 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHcC-CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC----cccCChH-HH-HHHHhhccCCCCCcE
Q 020113 33 MILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET----EPLGTAG-PL-ALARDKLIDDSGEPF 105 (331)
Q Consensus 33 li~~~l~~l~~~g-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~----~~~G~~~-al-~~~~~~~~~~~~~~~ 105 (331)
-...+++.+.+.| +..+.+..+...+....+... ..+.+..+...... .....++ .+ ..+.........+.+
T Consensus 21 ~~~~l~~~i~~~~~~~~~~~y~~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~i 99 (146)
T PF01936_consen 21 DFERLLEEIRKYGPLVRIRAYGNWDDPNQKSFQEA-LQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTI 99 (146)
T ss_dssp -HHHHHHHHTTTEEEEEEEEEE----HHHHHHHHH-HHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEeeccccchhhHHHH-HHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEE
Confidence 4455566666654 445556555332223333322 23335555444331 1122222 12 122222211111389
Q ss_pred EEEeCCeeccccHHHHHHHHhhcCCceEEE
Q 020113 106 FVLNSDVISEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 106 lv~~~D~i~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
+++.|| .|+..+++..++.+..+.++
T Consensus 100 vLvSgD----~Df~~~v~~l~~~g~~V~v~ 125 (146)
T PF01936_consen 100 VLVSGD----SDFAPLVRKLRERGKRVIVV 125 (146)
T ss_dssp EEE-------GGGHHHHHHHHHH--EEEEE
T ss_pred EEEECc----HHHHHHHHHHHHcCCEEEEE
Confidence 999999 56788888888777766555
No 365
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=32.15 E-value=1.6e+02 Score=20.17 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHcCCCEEEEEeccC----hHHHHHHHHHhh
Q 020113 32 PMILHQIEALKAVGVTEVVLAINYQ----PEVMLNFLKEFE 68 (331)
Q Consensus 32 pli~~~l~~l~~~gi~~i~iv~~~~----~~~i~~~~~~~~ 68 (331)
..++..|+.+.+.+...+.|+++.. ...+.+.+.+|-
T Consensus 13 ~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L 53 (83)
T PF01713_consen 13 RALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWL 53 (83)
T ss_dssp HHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHH
Confidence 4677888888888899999999876 434666666554
No 366
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=31.65 E-value=4.1e+02 Score=24.32 Aligned_cols=80 Identities=6% Similarity=0.000 Sum_probs=43.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.+..+-+.+.+.|.++++|+++..... ..+.+.+..+..+..+.....-.+.-+.+.+..+.+..+.... +++|
T Consensus 8 G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 86 (370)
T cd08192 8 GAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGC-DGVI 86 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 555677777888888888999998754221 1222222222223444332222333456667777776654444 6666
Q ss_pred EeC
Q 020113 108 LNS 110 (331)
Q Consensus 108 ~~~ 110 (331)
.-|
T Consensus 87 aiG 89 (370)
T cd08192 87 AFG 89 (370)
T ss_pred EeC
Confidence 443
No 367
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.28 E-value=4.2e+02 Score=24.36 Aligned_cols=82 Identities=6% Similarity=0.046 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEE
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~l 106 (331)
-|.-.+..+-+.+.+.|.++++|+++..... +.+.+.+..+..+..+.....-.+.-+.+.+..+.+....... +++
T Consensus 11 ~G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~I 89 (377)
T cd08188 11 FGRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGC-DVI 89 (377)
T ss_pred ECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEE
Confidence 3566778887888888889999998754221 2222332222223444333222223355666666666654444 666
Q ss_pred EEeCC
Q 020113 107 VLNSD 111 (331)
Q Consensus 107 v~~~D 111 (331)
|.-|-
T Consensus 90 IaiGG 94 (377)
T cd08188 90 IAVGG 94 (377)
T ss_pred EEeCC
Confidence 65444
No 368
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.13 E-value=2.3e+02 Score=25.28 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=41.1
Q ss_pred CCEEEEEeccChHHHHHHHHHhhhccC-eEEEEee-CCcccCChHHHHHHHhhccCC
Q 020113 46 VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQ-ETEPLGTAGPLALARDKLIDD 100 (331)
Q Consensus 46 i~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~-~~~~~G~~~al~~~~~~~~~~ 100 (331)
+.+|-|++.+....+.+++....+++. +++.+.+ .-.+.+....+..++..+...
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~ 70 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEM 70 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhc
Confidence 579999999999999999998776654 5554333 234557888899988888643
No 369
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.74 E-value=3.3e+02 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=20.3
Q ss_pred CcEEEEeCCeecccc-HHHHHHHHhhc
Q 020113 103 EPFFVLNSDVISEYP-LKQMIEFHRGR 128 (331)
Q Consensus 103 ~~~lv~~~D~i~~~~-l~~~l~~~~~~ 128 (331)
|.++++.+|.+...+ +..+++.+.+.
T Consensus 75 e~i~~~DaD~~~~~~~l~~l~~~~~~~ 101 (244)
T cd04190 75 EFILLVDADTKFDPDSIVQLYKAMDKD 101 (244)
T ss_pred CEEEEECCCCcCCHhHHHHHHHHHHhC
Confidence 488899999987766 78888777543
No 370
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=30.07 E-value=4.3e+02 Score=24.12 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.|.++++++++..... ..+.+.+..+..+..+.....-++.-+.+.+..+.+.+..... +++|
T Consensus 7 G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-d~Ii 85 (370)
T cd08551 7 GAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGC-DGVI 85 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 455677888888888889999998754321 2222222222223444333222333456667666666654433 5666
Q ss_pred EeCC
Q 020113 108 LNSD 111 (331)
Q Consensus 108 ~~~D 111 (331)
.-|-
T Consensus 86 aiGG 89 (370)
T cd08551 86 AVGG 89 (370)
T ss_pred EeCC
Confidence 4443
No 371
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.01 E-value=1.5e+02 Score=24.43 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH------hhhccCeEEEEeeCCcccCChHHHHHH
Q 020113 20 SVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE------FEKKLEIKITCSQETEPLGTAGPLALA 93 (331)
Q Consensus 20 ~~pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~------~~~~~~~~v~~~~~~~~~G~~~al~~~ 93 (331)
..||-|+-++--|=..++++.|.++|++-++..-+++-....+|... +.+.+++++ +. . .......++..
T Consensus 2 ~~~kiLlH~CCAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~--ie-g-dY~~~~~w~~~ 77 (204)
T COG1636 2 GRPKLLLHSCCAPCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINF--IE-G-DYEDLEKWFER 77 (204)
T ss_pred CCCeeEEEeecCCCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCee--ee-c-CcccHHHHHHH
Confidence 35899999999999999999999999988777777764434333332 334455444 22 1 11234444544
Q ss_pred HhhccCCCCCcEEEEeCCeeccccHHHHHHHHhhcCCce
Q 020113 94 RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGRGGEA 132 (331)
Q Consensus 94 ~~~~~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~ 132 (331)
...++++.+. =.-|-+=++.-|....+...+.+-+.
T Consensus 78 vKg~E~EpE~---G~RC~~Cfd~Rle~tA~~A~e~G~d~ 113 (204)
T COG1636 78 VKGMEDEPEG---GKRCTMCFDMRLEKTAKKAKELGFDV 113 (204)
T ss_pred hhcchhCCCC---CchhHhHHHHHHHHHHHHHHHcCCch
Confidence 4555443220 00122223444666666666666543
No 372
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.56 E-value=4.6e+02 Score=24.30 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEeccCh------HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
-|.=-+.+..+.+.+.|.++++||+.+.- +.+.+.++. .++++.+-..-.+.=+.+.+..+.+.++....
T Consensus 12 fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~----~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~ 87 (377)
T COG1454 12 FGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDA----AGIEYEVFDEVEPEPTIETVEAGAEVAREFGP 87 (377)
T ss_pred ecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHh----cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 45667888888888889999999998741 233333333 24444333333344466777777777766655
Q ss_pred CcEEEEeC
Q 020113 103 EPFFVLNS 110 (331)
Q Consensus 103 ~~~lv~~~ 110 (331)
+++|..|
T Consensus 88 -D~iIalG 94 (377)
T COG1454 88 -DTIIALG 94 (377)
T ss_pred -CEEEEeC
Confidence 5555444
No 373
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=29.40 E-value=3.9e+02 Score=24.55 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.|.++++|+++..-.. ..+.+....++.+.++.....-++.-+.+.+..+.+.+..... +++|
T Consensus 10 G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 88 (376)
T cd08193 10 GAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGA-DGVI 88 (376)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 555677777778877888999998754211 2222322222234444333333344456667767666654443 5665
Q ss_pred EeCC
Q 020113 108 LNSD 111 (331)
Q Consensus 108 ~~~D 111 (331)
.-|-
T Consensus 89 aiGG 92 (376)
T cd08193 89 GFGG 92 (376)
T ss_pred EeCC
Confidence 5443
No 374
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=29.37 E-value=4.5e+02 Score=24.12 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.+.++++|+++..... ..+.+.+.-++.++.+.....-.+.-+.+.+..+.+.++.... +++|
T Consensus 7 G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 85 (375)
T cd08194 7 GEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGC-DVII 85 (375)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 556677777777777778999998754321 2222322222234444333222333356666666666654443 6666
Q ss_pred EeCC
Q 020113 108 LNSD 111 (331)
Q Consensus 108 ~~~D 111 (331)
.-|-
T Consensus 86 aiGG 89 (375)
T cd08194 86 ALGG 89 (375)
T ss_pred EeCC
Confidence 4443
No 375
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.27 E-value=4.1e+02 Score=23.57 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=5.8
Q ss_pred cEEEEeCCe
Q 020113 104 PFFVLNSDV 112 (331)
Q Consensus 104 ~~lv~~~D~ 112 (331)
+++|+.|=+
T Consensus 171 Dlivlagym 179 (289)
T PRK13010 171 ELVVLARYM 179 (289)
T ss_pred CEEEEehhh
Confidence 666666655
No 376
>PLN02828 formyltetrahydrofolate deformylase
Probab=28.64 E-value=95 Score=27.17 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=5.3
Q ss_pred cEEEEeCCe
Q 020113 104 PFFVLNSDV 112 (331)
Q Consensus 104 ~~lv~~~D~ 112 (331)
+++|+.+=+
T Consensus 149 DliVLAgym 157 (268)
T PLN02828 149 DFLVLARYM 157 (268)
T ss_pred CEEEEeeeh
Confidence 566666555
No 377
>PHA00673 acetyltransferase domain containing protein
Probab=27.95 E-value=79 Score=25.08 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=28.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHH
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLK 65 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 65 (331)
|+.|+++..+.+.+.|+..++|...+....+.=|..
T Consensus 103 G~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~ 138 (154)
T PHA00673 103 GMALLRATEALARDLGATGLYVSGPTEGRLVQLLPA 138 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHh
Confidence 678999999999999999999988776654444433
No 378
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=27.62 E-value=1.1e+02 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=23.1
Q ss_pred eeCCcchHHHHHHHHHHcCCCEEEEEec
Q 020113 27 DFANKPMILHQIEALKAVGVTEVVLAIN 54 (331)
Q Consensus 27 pi~g~pli~~~l~~l~~~gi~~i~iv~~ 54 (331)
..+|+|+.+++++.+.+.|+.-.++.-+
T Consensus 15 ~~~g~~l~~~ll~~~~~~gi~GaTV~rg 42 (101)
T PF02641_consen 15 RWGGKPLYEWLLERAREAGIAGATVFRG 42 (101)
T ss_dssp EETTEEHHHHHHHHHHHTT-SEEEEEE-
T ss_pred ccCceEHHHHHHHHHHHCCCCeEEEEcc
Confidence 3679999999999999999998888765
No 379
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=26.98 E-value=5e+02 Score=23.89 Aligned_cols=80 Identities=6% Similarity=0.068 Sum_probs=45.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHH--HHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.++.+-+.+.+.|.++++|+++..-.. +.+.+.+..++.+.++.....-++.-+.+.+..+.+.+..... +++|
T Consensus 14 G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 92 (382)
T PRK10624 14 GRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGA-DYLI 92 (382)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 666788888888888889999998754221 2222332222234444433322333356667766666655444 6666
Q ss_pred EeC
Q 020113 108 LNS 110 (331)
Q Consensus 108 ~~~ 110 (331)
.-|
T Consensus 93 aiG 95 (382)
T PRK10624 93 AIG 95 (382)
T ss_pred EeC
Confidence 444
No 380
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.58 E-value=4.5e+02 Score=23.21 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=7.0
Q ss_pred cEEEEeCCe-ecc
Q 020113 104 PFFVLNSDV-ISE 115 (331)
Q Consensus 104 ~~lv~~~D~-i~~ 115 (331)
+++|+.|=+ +..
T Consensus 167 Dlivlagy~~il~ 179 (286)
T PRK06027 167 DLVVLARYMQILS 179 (286)
T ss_pred CEEEEecchhhcC
Confidence 677766644 443
No 381
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.56 E-value=3e+02 Score=25.89 Aligned_cols=54 Identities=7% Similarity=0.135 Sum_probs=40.4
Q ss_pred CCEEEEEeccChHHHHHHHHHhhhccC-eEEEEee-CCcccCChHHHHHHHhhccC
Q 020113 46 VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQ-ETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 46 i~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~-~~~~~G~~~al~~~~~~~~~ 99 (331)
+.+|-|++.+....+.+++....++++ .++.+.+ .-.+.+....+..++..+..
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~ 190 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANA 190 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcC
Confidence 348999999999999999998877765 4554433 22455678888888888865
No 382
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=26.33 E-value=4.7e+02 Score=23.35 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChH-HHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~ 108 (331)
|+-.++.+-+.+.+.|.++++++++.... .+.+.+.+..++. ..+.......+.-+.+.+..+.+.+..... +++|.
T Consensus 7 G~g~l~~l~~~~~~~g~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-d~IIa 84 (332)
T cd07766 7 GEGAIEKIGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEV-DAVIA 84 (332)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCc-CEEEE
Confidence 55567777777777788899999976532 2333333322221 233222222222466667666666654433 66665
Q ss_pred eCC-eeccccHHHHHHHHhhcCCceEEE
Q 020113 109 NSD-VISEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 109 ~~D-~i~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
-|. .+. |...++......+.....+
T Consensus 85 iGGGs~~--D~aK~ia~~~~~~~p~i~i 110 (332)
T cd07766 85 VGGGSTL--DTAKAVAALLNRGLPIIIV 110 (332)
T ss_pred eCCchHH--HHHHHHHHHhcCCCCEEEE
Confidence 544 333 3444444433334444444
No 383
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=25.94 E-value=1.1e+02 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=18.0
Q ss_pred CcchHHHHHHHHHHcCCCEEEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLA 52 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv 52 (331)
+.|-++..++.|.+.|.++++++
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 56888888888888888877775
No 384
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=25.66 E-value=1.2e+02 Score=23.69 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccCh---HHHHHHHH
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQP---EVMLNFLK 65 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~---~~i~~~~~ 65 (331)
-++.+-++|..+|+++++.+..... +++.+|++
T Consensus 107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 5677778899999999987776544 55555554
No 385
>PRK04946 hypothetical protein; Provisional
Probab=25.59 E-value=1e+02 Score=25.24 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=35.5
Q ss_pred CCCCceeCCc------chHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhcc
Q 020113 22 PKPLVDFANK------PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL 71 (331)
Q Consensus 22 pK~llpi~g~------pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~ 71 (331)
|..-|.+-|. ..|...|+.+...|+..+.|+-+.....+.+++..|-.+.
T Consensus 94 ~~~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q~ 149 (181)
T PRK04946 94 PELFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQH 149 (181)
T ss_pred CceEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcCC
Confidence 4455555554 3566667777778888888888887778888888876543
No 386
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.53 E-value=4.5e+02 Score=24.29 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=46.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEeccCh------HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCC
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~ 102 (331)
-|.--+.++-+.+.+.|.++++|+++..- +.+.+.+++ .++.+.....-.+.-+.+.+..+.+..+....
T Consensus 14 ~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~----~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~ 89 (383)
T PRK09860 14 IGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEE----RNIFSVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 46667788888888889999999987532 233333332 34444332222333466777777777765544
Q ss_pred CcEEEEeCC
Q 020113 103 EPFFVLNSD 111 (331)
Q Consensus 103 ~~~lv~~~D 111 (331)
+++|.-|-
T Consensus 90 -D~IiaiGG 97 (383)
T PRK09860 90 -DSVISLGG 97 (383)
T ss_pred -CEEEEeCC
Confidence 67774443
No 387
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=25.52 E-value=1.1e+02 Score=21.99 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCEECCCcEEccceEECCCcEECcc----cEE-cCcEEccCeEEccCccCC
Q 020113 282 HSTVGRWARVENMTILGEDVHVADE----VYS-NGAVVLPHKEIKSSIVNP 327 (331)
Q Consensus 282 ~~~ig~~~~i~~~~~i~~~~~i~~~----~~i-~~~~v~~~~~i~~~~~~~ 327 (331)
...|+.++.+.+ .+-.+++.|.-. ... ....+.+.+.+..++..+
T Consensus 36 ~v~i~~~~~v~G-~i~~~~~~i~G~v~G~v~a~~~v~i~~~~~v~G~i~~~ 85 (101)
T PF04519_consen 36 KVKIGGNGEVKG-DIKADDVIISGSVDGNVEASGKVEIYGTARVEGDITAG 85 (101)
T ss_pred EEEEcCCCEEEE-EEEEeEEEEcCEEeEEEEECceEEEeCCEEEEEEEEEC
Confidence 566666666666 444444444321 122 123455555555555544
No 388
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=24.90 E-value=3.9e+02 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHh
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~ 67 (331)
||+.+.+.|.+...+.+ -|++.+++...++.+++.++
T Consensus 238 GKT~l~~~lak~s~aDv-iVyvg~GERG~Em~evle~f 274 (591)
T TIGR01042 238 GKTVISQSLSKYSNSDA-IVYVGCGERGNEMAEVLMDF 274 (591)
T ss_pred CHHHHHHHHHhccCcCE-EEEEEEeechHHHHHHHHHh
Confidence 88999998877666665 56777788888888888874
No 389
>PLN02573 pyruvate decarboxylase
Probab=24.75 E-value=3.8e+02 Score=26.36 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCCCCCceeC--CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHH
Q 020113 20 SVPKPLVDFA--NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (331)
Q Consensus 20 ~~pK~llpi~--g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~ 64 (331)
+-||+-.|+. ..+.-+++++.|.+.|+++++-+.+.....+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal 49 (578)
T PLN02573 3 SAPKPATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHL 49 (578)
T ss_pred CCCCCCCccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHH
Confidence 3588888874 44678999999999999999999987766666665
No 390
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=24.13 E-value=98 Score=24.52 Aligned_cols=27 Identities=7% Similarity=0.279 Sum_probs=23.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccC
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQ 56 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~ 56 (331)
|..|+++++......|++++++.+.+.
T Consensus 83 G~~Ll~~~~~~Ar~~gi~~lf~LTt~~ 109 (153)
T COG1246 83 GERLLERLLADARELGIKELFVLTTRS 109 (153)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeeccc
Confidence 567999999999999999999999643
No 391
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=23.55 E-value=5.8e+02 Score=23.43 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=55.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHH--HHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVML--NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~--~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
|+-.+..+-..++..|.+.+.+++.+.-..+- +...+.-.+.++++++-....+.-+..+++++++..+...-|-|+-
T Consensus 54 G~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~va 133 (465)
T KOG3857|consen 54 GKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVA 133 (465)
T ss_pred cchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEE
Confidence 66788888899999999999999987643221 1112222334666666555555567888899999887765545665
Q ss_pred EeCCe
Q 020113 108 LNSDV 112 (331)
Q Consensus 108 ~~~D~ 112 (331)
+.|-.
T Consensus 134 iGGGS 138 (465)
T KOG3857|consen 134 IGGGS 138 (465)
T ss_pred EcCcc
Confidence 55554
No 392
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.08 E-value=5.9e+02 Score=23.36 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEeccCh---HHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcE
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~ 105 (331)
-|+-.++.+-+.+.+.| ++++|+++... ..+.+.+.+.-++.++++.....-++.-+.+.+..+.+.++.... ++
T Consensus 9 fG~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~ 86 (380)
T cd08185 9 FGAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGC-DF 86 (380)
T ss_pred ECcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCC-CE
Confidence 35667778777777777 89999997542 122223332222234444332222333456666666666654444 66
Q ss_pred EEEeC
Q 020113 106 FVLNS 110 (331)
Q Consensus 106 lv~~~ 110 (331)
+|.-|
T Consensus 87 IiavG 91 (380)
T cd08185 87 VVGLG 91 (380)
T ss_pred EEEeC
Confidence 76444
No 393
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.99 E-value=5.1e+02 Score=22.62 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=51.4
Q ss_pred CceeCCcchHHHHHHHHHHc--CCCEEEEEeccChH---HHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccC
Q 020113 25 LVDFANKPMILHQIEALKAV--GVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 25 llpi~g~pli~~~l~~l~~~--gi~~i~iv~~~~~~---~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~ 99 (331)
+.=+...+.+...++.+.+. ..+++.++.+.... ...+.+.+..++.++++....... ...+..+.+.+..
T Consensus 108 vTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~----~~~~~~~~~~l~~ 183 (294)
T PF04392_consen 108 VTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPS----SEDLEQALEALAE 183 (294)
T ss_dssp EEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESS----GGGHHHHHHHHCT
T ss_pred EEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCc----HhHHHHHHHHhhc
Confidence 33455778889999988874 36888777765432 334445554556677765443322 2333444455544
Q ss_pred CCCCcEEEEeCCeeccccHHHHHHHHhhc
Q 020113 100 DSGEPFFVLNSDVISEYPLKQMIEFHRGR 128 (331)
Q Consensus 100 ~~~~~~lv~~~D~i~~~~l~~~l~~~~~~ 128 (331)
.. +.+++..|.........++....+.
T Consensus 184 ~~--da~~~~~~~~~~~~~~~i~~~~~~~ 210 (294)
T PF04392_consen 184 KV--DALYLLPDNLVDSNFEAILQLANEA 210 (294)
T ss_dssp T---SEEEE-S-HHHHHTHHHHHHHCCCT
T ss_pred cC--CEEEEECCcchHhHHHHHHHHHHhc
Confidence 33 7888888886655666666654433
No 394
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=22.91 E-value=5.2e+02 Score=22.68 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=39.8
Q ss_pred cEEEEeCCeeccccHHHHHHHHhhcCCc-eEEEecCCCCceEEEEcCCcCceeEeeecCCCCCCCeEEEEEEEEChhhHh
Q 020113 104 PFFVLNSDVISEYPLKQMIEFHRGRGGE-ASIMVDEPSKYGVVVMEETTGKVEKFVEKPKNFVGNKINAGIYLLNPSVLD 182 (331)
Q Consensus 104 ~~lv~~~D~i~~~~l~~~l~~~~~~~~~-~~i~~~~~~~~~~v~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~ 182 (331)
.+|.+-+|+++..++.++.+.+.+-... ...++++...+-. ..+.. ..++......+.++|+.+++-+...
T Consensus 100 kvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~-------~~~~~-~~~~~~~~~~yFNsGVmlinL~~wR 171 (280)
T cd06431 100 KVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYL-------GNLWK-NHRPWPALGRGFNTGVILLDLDKLR 171 (280)
T ss_pred EEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhh-------hhhhh-ccCCCcccccceeeeeeeeeHHHHH
Confidence 8999999999999999999875332222 2222333221100 00000 0011111124799999999987543
No 395
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=22.72 E-value=3.5e+02 Score=22.45 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccC--hHHHHHHHHHhhhccCeEEEEeeCCcccC
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~G 85 (331)
=|...++.+..-.+++|++.+++. .+....|+.+..+.++++++-+.+.-|.|
T Consensus 123 ~i~~L~~Rl~~~~~~EvIlAtnpTvEGeaTA~YI~~~l~~~~ikvtRlA~GiPvG 177 (198)
T COG0353 123 NIDELLQRLAEGSIKEVILATNPTVEGEATALYIARLLKPLGLKVTRLAQGVPVG 177 (198)
T ss_pred cHHHHHHHHhcCCCceEEEecCCCccchHHHHHHHHHHhhcCCeEEEEeecCccC
Confidence 456666777776677999999865 47888888887666677776555544443
No 396
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=22.37 E-value=5e+02 Score=22.27 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCC-------cccCC--hHHHH-HHHh-hccCCCCCcEEEEeCCeec
Q 020113 46 VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET-------EPLGT--AGPLA-LARD-KLIDDSGEPFFVLNSDVIS 114 (331)
Q Consensus 46 i~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-------~~~G~--~~al~-~~~~-~~~~~~~~~~lv~~~D~i~ 114 (331)
.-+++|+...-.++-.+.+.+....++.++.+.... .+... ..+.+ ...+ .++..- +.+|.+.+|+++
T Consensus 30 ~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~v-dkvLYLD~Dilv 108 (248)
T cd06432 30 PVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNV-DKVIFVDADQIV 108 (248)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhcc-CEEEEEcCCcee
Confidence 347777776555555666666544455544433321 01111 11112 1223 454322 289999999999
Q ss_pred cccHHHHHHHHh
Q 020113 115 EYPLKQMIEFHR 126 (331)
Q Consensus 115 ~~~l~~~l~~~~ 126 (331)
..++.++.+.-.
T Consensus 109 ~~dL~eL~~~dl 120 (248)
T cd06432 109 RTDLKELMDMDL 120 (248)
T ss_pred cccHHHHHhcCc
Confidence 999999997633
No 397
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.72 E-value=5.6e+02 Score=22.61 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=5.1
Q ss_pred cEEEEeCCe
Q 020113 104 PFFVLNSDV 112 (331)
Q Consensus 104 ~~lv~~~D~ 112 (331)
+++|+.|=+
T Consensus 167 Dlivlagy~ 175 (286)
T PRK13011 167 ELVVLARYM 175 (286)
T ss_pred CEEEEeChh
Confidence 566665544
No 398
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.63 E-value=4.4e+02 Score=24.86 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=39.3
Q ss_pred CEEEEEeccChHHHHHHHHHhhhccC-eEEEEee-CCcccCChHHHHHHHhhccC
Q 020113 47 TEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQ-ETEPLGTAGPLALARDKLID 99 (331)
Q Consensus 47 ~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~-~~~~~G~~~al~~~~~~~~~ 99 (331)
.+|-|++++....+.+++....++++ +++.+.+ .-.+.+....+..++..+..
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~ 184 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANT 184 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhc
Confidence 48999999999999999998777664 4554333 22455677888888887764
No 399
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=21.47 E-value=1.6e+02 Score=26.62 Aligned_cols=42 Identities=21% Similarity=0.459 Sum_probs=31.6
Q ss_pred CceeCCcc-hHHHHHHHHHHc-CCCEEEEEeccCh--HHHHHHHHH
Q 020113 25 LVDFANKP-MILHQIEALKAV-GVTEVVLAINYQP--EVMLNFLKE 66 (331)
Q Consensus 25 llpi~g~p-li~~~l~~l~~~-gi~~i~iv~~~~~--~~i~~~~~~ 66 (331)
.+.+-+|| .++++++.|+++ ||+++.++..++. +++-+.++.
T Consensus 122 V~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 122 VLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIES 167 (455)
T ss_pred EEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHhh
Confidence 34457997 788999999995 7999999988775 455555554
No 400
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=21.46 E-value=1.4e+02 Score=26.08 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCCCceeCCcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEE
Q 020113 22 PKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKIT 76 (331)
Q Consensus 22 pK~llpi~g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~ 76 (331)
++|-+-..+.+++...++.+...+++++++-.....+.+.+++..+.+....++.
T Consensus 81 ~~P~LLy~~~~~~~~~lrd~~~~~~~~Iivd~~~~~~~~~~~~~~~~~~~~~~i~ 135 (271)
T PF10150_consen 81 KAPSLLYREPDLYERVLRDYLDEDVDEIIVDDKEIYEEIKEYLKEFSPDLKDKIE 135 (271)
T ss_dssp -STEEEE-STSHHHHHHHHH--TTEEEEEES-HHHHHHHHHHHHTT-GGGTTTEE
T ss_pred CCCeEEEeCCChhhHHHhhcCcCCCCEEEECCcHHHHHHHHHHHHhCccccceEE
Confidence 3455555677788888888777777888776655556777777665443333343
No 401
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=21.28 E-value=4.2e+02 Score=23.63 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCe
Q 020113 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (331)
Q Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~ 112 (331)
=--.+++.|...| ++++++++......++|.+++.+ .|.. -+.++.-.+++.++...+..... ..+.+.++.+.-
T Consensus 42 Gs~e~l~~L~~~g-K~i~fvTNNStksr~~y~kK~~~-lG~~--~v~e~~i~ssa~~~a~ylk~~~~-~~k~Vyvig~~g 116 (306)
T KOG2882|consen 42 GSPEALNLLKSLG-KQIIFVTNNSTKSREQYMKKFAK-LGFN--SVKEENIFSSAYAIADYLKKRKP-FGKKVYVIGEEG 116 (306)
T ss_pred ChHHHHHHHHHcC-CcEEEEeCCCcchHHHHHHHHHH-hCcc--ccCcccccChHHHHHHHHHHhCc-CCCeEEEecchh
Confidence 3456678888888 99999998877777777776432 2322 13344444566666655544331 111555555544
Q ss_pred e
Q 020113 113 I 113 (331)
Q Consensus 113 i 113 (331)
+
T Consensus 117 i 117 (306)
T KOG2882|consen 117 I 117 (306)
T ss_pred h
Confidence 3
No 402
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.20 E-value=5.3e+02 Score=24.44 Aligned_cols=62 Identities=6% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCEEEEEeccChHHHHHHHHHhhhccC-eEEEEeeC-CcccCChHHHHHHHhhccCCCCCcEEE
Q 020113 46 VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQE-TEPLGTAGPLALARDKLIDDSGEPFFV 107 (331)
Q Consensus 46 i~~i~iv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~-~~~~G~~~al~~~~~~~~~~~~~~~lv 107 (331)
...|-|++++....+++.+....++++ +++.+.+. -.+.+.+..+..+.+..+...+=++|+
T Consensus 135 p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlI 198 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLI 198 (440)
T ss_pred CCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEE
Confidence 458999999999999999998887776 66654432 245677888988888887654214444
No 403
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.46 E-value=5.6e+02 Score=22.11 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeccChHHHHHHHHHhhhccCeEEEEeeCCcccCChHHHHHHHhhccCCCCCcEEEEeCCee
Q 020113 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI 113 (331)
Q Consensus 34 i~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~G~~~al~~~~~~~~~~~~~~~lv~~~D~i 113 (331)
++...+.+.++ ++|+++.......+.+++.....+.+..+... +..+........+..+ +++++-.-.-
T Consensus 118 l~~~~~~i~~a--~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~~~---Dv~I~iS~sg 186 (278)
T PRK11557 118 LHECVTMLRSA--RRIILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALSPD---DLLLAISYSG 186 (278)
T ss_pred HHHHHHHHhcC--CeEEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCCCC---CEEEEEcCCC
Confidence 33444444454 57888775555666777765434455554332 2234444444555443 6777665444
Q ss_pred ccccHHHHHHHHhhcCCceEEE
Q 020113 114 SEYPLKQMIEFHRGRGGEASIM 135 (331)
Q Consensus 114 ~~~~l~~~l~~~~~~~~~~~i~ 135 (331)
....+..+++..+++++...++
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~I 208 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAI 208 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEE
Confidence 4556778888888888766555
No 404
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.19 E-value=1.7e+02 Score=22.03 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~ 66 (331)
|+.|+.++++.+.+.|+..+.+.+......-..+..+
T Consensus 94 G~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~ 130 (144)
T PRK10146 94 GSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLR 130 (144)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHH
Confidence 5678888888888888888888776544334444444
No 405
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.02 E-value=1.5e+02 Score=21.59 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEe
Q 020113 29 ANKPMILHQIEALKAVGVTEVVLAI 53 (331)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~iv~ 53 (331)
.+.|-++..++.+.+.|.++|+++-
T Consensus 39 E~~P~i~~~l~~l~~~G~~~i~lvP 63 (103)
T cd03413 39 EGYPGLDDVLAKLKKAGIKKVTLMP 63 (103)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 3789999999999999999988763
No 406
>PHA01807 hypothetical protein
Probab=20.01 E-value=2.1e+02 Score=22.53 Aligned_cols=37 Identities=3% Similarity=-0.032 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEeccChHHHHHHHHH
Q 020113 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (331)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~ 66 (331)
|+-|++.+++.+.+.|+..+...++........+.+.
T Consensus 99 G~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~ 135 (153)
T PHA01807 99 AREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRR 135 (153)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHh
Confidence 6789999999999999999999888777655555555
Done!