BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020115
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA+H AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 26 IAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKE 85
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ D L G VAV + GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 86 QFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 145
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G S Q++VALSG HT+G GF NP++FDNSY+ LL +
Sbjct: 146 KAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------TGEKD 199
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D ++ YA ++++FF D+ A++KL G
Sbjct: 200 GLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELG 245
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 123/234 (52%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VALSGAHTLG G+ P VFDNS+Y LL + W
Sbjct: 160 RLNMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA+H AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA+H AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA+H AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLG-----TKGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 126/243 (51%), Gaps = 25/243 (10%)
Query: 102 SDYLLMKEEVTK-----VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERP 154
+DY E+ K + K A +LRLA+H AGTF+ +GG G+I + EL
Sbjct: 9 ADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKHPAELAHS 68
Query: 155 ENAGLNKPLKILEKAKGDVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
N GL+ +++LE K + + D L G VAV V GGP +P GR D EP PEG
Sbjct: 69 ANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG 128
Query: 214 KLPQETLDASGLKQCFQRK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNS 262
+LP T + L+ F + G + Q++VALSG HT+G GF NP++FDNS
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS 188
Query: 263 YYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLV 322
Y+ LL S ++ LPSD+AL+ D + YA +++ FF D+ A+ KL
Sbjct: 189 YFTELL------SGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 323 NSG 325
G
Sbjct: 243 ELG 245
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 121/234 (51%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLGTKGF----------GNPIVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAHTLG NP VFDNS+Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPNVFDNSFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA H AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 25/243 (10%)
Query: 102 SDYLLMKEEVTK-----VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERP 154
+DY E+ K + K A +L+LA+H AGTF+ +GG G+I + EL
Sbjct: 9 ADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKHPAELAHS 68
Query: 155 ENAGLNKPLKILEKAKGDVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
N GL+ +++LE K + + D L G VAV V GGP +P GR D EP PEG
Sbjct: 69 ANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG 128
Query: 214 KLPQETLDASGLKQCFQRK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNS 262
+LP T + L+ F + G + Q++VALSG HT+G GF NP++FDNS
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS 188
Query: 263 YYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLV 322
Y+ LL S ++ LPSD+AL+ D + YA +++ FF D+ A+ KL
Sbjct: 189 YFTELL------SGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 323 NSG 325
G
Sbjct: 243 ELG 245
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAHTLG G+ P VFDNS+Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAHTLG G+ P VFDNS+Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 130 bits (327), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 122/234 (52%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAHTLG G+ P VFDNS+Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 25/243 (10%)
Query: 102 SDYLLMKEEVTK-----VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERP 154
+DY E+ K + K A +L LA+H AGTF+ +GG G+I + EL
Sbjct: 9 ADYQKAVEKAKKKLRGFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKHPAELAHS 68
Query: 155 ENAGLNKPLKILEKAKGDVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
N GL+ +++LE K + + D L G VAV V GGP +P GR D EP PEG
Sbjct: 69 ANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG 128
Query: 214 KLPQETLDASGLKQCFQRK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNS 262
+LP T + L+ F + G + Q++VALSG HT+G GF NP++FDNS
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS 188
Query: 263 YYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLV 322
Y+ LL S ++ LPSD+AL+ D + YA +++ FF D+ A+ KL
Sbjct: 189 YFTELL------SGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 323 NSG 325
G
Sbjct: 243 ELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA+ AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 25/243 (10%)
Query: 102 SDYLLMKEEVTK-----VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERP 154
+DY E+ K + K A +LRLA + AGTF+ +GG G+I + EL
Sbjct: 9 ADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTIKHPAELAHS 68
Query: 155 ENAGLNKPLKILEKAKGDVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
N GL+ +++LE K + + D L G VAV V GGP +P GR D EP PEG
Sbjct: 69 ANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG 128
Query: 214 KLPQETLDASGLKQCFQRK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNS 262
+LP T + L+ F + G + Q++VALSG HT+G GF NP++FDNS
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS 188
Query: 263 YYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLV 322
Y+ LL S ++ LPSD+AL+ D + YA +++ FF D+ A+ KL
Sbjct: 189 YFTELL------SGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 323 NSG 325
G
Sbjct: 243 ELG 245
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 20/226 (8%)
Query: 114 VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKG 171
+ K A +LRLA AGTF+ +GG G+I + EL N GL+ +++LE K
Sbjct: 38 IAEKRCAPLMLRLAAMSAGTFDKGTKTGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKA 97
Query: 172 DVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQ 230
+ + D L G VAV V GGP +P GR D EP PEG+LP T + L+ F
Sbjct: 98 EFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 231 RK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNSYYKILLEKPWQSSAGMS 279
+ G + Q++VALSG HT+G GF NP++FDNSY+ LL S
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELL------SGEKE 211
Query: 280 SMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
++ LPSD+AL+ D + YA +++ FF D+ A+ KL G
Sbjct: 212 GLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELG 257
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 124/243 (51%), Gaps = 25/243 (10%)
Query: 102 SDYLLMKEEVTK-----VVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERP 154
+DY E+ K + K A +LRLA AGTF+ +GG G+I + EL
Sbjct: 21 ADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAACSAGTFDKGTKTGGPFGTIKHPAELAHS 80
Query: 155 ENAGLNKPLKILEKAKGDVNAIR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
N GL+ +++LE K + + D L G VAV V GGP +P GR D EP PEG
Sbjct: 81 ANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG 140
Query: 214 KLPQETLDASGLKQCFQRK-GFSAQELVALSGAHTLGT-----KGF-----GNPIVFDNS 262
+LP T + L+ F + G + Q++VALSG HT+G GF NP++FDNS
Sbjct: 141 RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS 200
Query: 263 YYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLV 322
Y+ LL S ++ LPSD+AL+ D + YA +++ FF D+ A+ KL
Sbjct: 201 YFTELL------SGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 323 NSG 325
G
Sbjct: 255 ELG 257
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 30/260 (11%)
Query: 95 AKAESGMS--DYLLMKEEVTKVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIVY-- 149
A E G S D+ + + +++ K VL RLA+H +GT++ DN+GG G
Sbjct: 8 ASVEKGRSYEDFQKVYNAIALKIAEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFK 67
Query: 150 -ELERPENAGLNKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSM 207
E P NAGL K LE + I D+ +LGG AV GP IP GR+D+
Sbjct: 68 KEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP 127
Query: 208 E---PDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTK-----GFGNPI-- 257
E PD G+LP DA ++ FQR + +E+VAL GAH LG G+ P
Sbjct: 128 EDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPFGA 186
Query: 258 ---VFDNSYYKILLEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYAD 305
VF N +Y LL + W + S + LP+D +L++D + L +K YA+
Sbjct: 187 ANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYAN 246
Query: 306 NQNMFFEDFKNAYVKLVNSG 325
+Q+ FF+DF A+ KL+ +G
Sbjct: 247 DQDKFFKDFSKAFEKLLENG 266
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLAFH +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 105 LLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNK 161
L ++E+ + G ++RLA+H +GT++ DN+GG G E P NAGL
Sbjct: 30 LKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 89
Query: 162 PLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQ 217
K LE + I D+ +LGG AV GP IP GR+D+ E PD G+LP
Sbjct: 90 GFKFLEPIHKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPD-NGRLPD 148
Query: 218 ETLDASGLKQCFQRKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKIL 267
DA ++ FQR + +E+VAL GAH LG G+ P VF N +Y L
Sbjct: 149 ADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL 208
Query: 268 LEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 318
L + W + S + LP+D +L++D + L +K YA++Q+ FF+DF A+
Sbjct: 209 LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 268
Query: 319 VKLVNSG 325
KL+ +G
Sbjct: 269 EKLLENG 275
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N YY LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEYYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S I LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 40 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 99
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 100 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 158
Query: 231 RKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 159 RLNMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDAN 218
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 219 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLENG 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 40 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 99
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 100 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 158
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 159 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 218
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 219 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 105 LLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNK 161
L ++E+ + G ++RLA+H +GT++ DN+GG G E P NAGL
Sbjct: 30 LKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 89
Query: 162 PLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQ 217
K LE + I D+ +LGG AV GP IP GR+D+ E PD G+LP
Sbjct: 90 GFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPD 148
Query: 218 ETLDASGLKQCFQRKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKIL 267
DA ++ FQR + +E+VAL GAH LG G+ P VF N +Y L
Sbjct: 149 ADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL 208
Query: 268 LEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 318
L + W + S + LP+D +L++D + L +K YA++Q+ FF+DF A+
Sbjct: 209 LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 268
Query: 319 VKLVNSG 325
KL+ +G
Sbjct: 269 EKLLENG 275
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 273
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 105 LLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNK 161
L ++E+ + G ++RLA+H +GT++ DN+GG G E P NAGL
Sbjct: 30 LKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 89
Query: 162 PLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQ 217
K LE + I D+ +LGG AV GP IP GR+D+ E PD G+LP
Sbjct: 90 GFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPD 148
Query: 218 ETLDASGLKQCFQRKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKIL 267
DA ++ FQR + +E+VAL GAH LG G+ P VF N +Y L
Sbjct: 149 ADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL 208
Query: 268 LEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 318
L + W + S + LP+D +L++D + L +K YA++Q+ FF+DF A+
Sbjct: 209 LNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 268
Query: 319 VKLVNSG 325
KL+ +G
Sbjct: 269 EKLLENG 275
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 105 LLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNK 161
L ++E+ + G ++RLA+H +GT++ DN+GG G E P NAGL
Sbjct: 28 LKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 87
Query: 162 PLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQ 217
K LE + I D+ +LGG AV GP IP GR+D+ E PD G+LP
Sbjct: 88 GFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPD 146
Query: 218 ETLDASGLKQCFQRKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKIL 267
DA ++ FQR + +E+VAL GAH LG G+ P VF N +Y L
Sbjct: 147 ADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL 206
Query: 268 LEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 318
L + W + S + LP+D +L++D + L +K YA++Q+ FF+DF A+
Sbjct: 207 LNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 266
Query: 319 VKLVNSG 325
KL+ +G
Sbjct: 267 EKLLENG 273
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 44 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 103
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 104 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 162
Query: 231 RKGFSAQELVALSGAHTLGT--------KGFGNPIVFDNSYYKILLEKPW---------Q 273
R + +E+VAL GAH LG +G G VF N +Y LL + W +
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNE 222
Query: 274 SSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 223 QWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 274
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLGT--------KGFGNPIVFDNSYYKILLEKPW---------Q 273
R + +E+VAL GAH LG +G G VF N +Y LL + W +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNE 216
Query: 274 SSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 QWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 268
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 25/232 (10%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 39 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 98
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 99 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 157
Query: 231 RKGFSAQELVALSGAHTLGT--------KGFGNPIVFDNSYYKILLEKPW---------Q 273
R + +E+VAL GAH LG +G G VF N +Y LL + W +
Sbjct: 158 RLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNE 217
Query: 274 SSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 218 QWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 269
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGDDLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPELVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTELKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 44 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 103
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 104 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 162
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 222
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 223 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 124/247 (50%), Gaps = 27/247 (10%)
Query: 105 LLMKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNK 161
L ++E+ + G ++RLA+H +GT++ DN+GG G E P NAGL
Sbjct: 25 LKLREDDEYDNAIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQN 84
Query: 162 PLKILEKAKGDVNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQ 217
K LE + I D+ +LGG AV GP IP GR+D+ E PD G+LP
Sbjct: 85 GFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPD 143
Query: 218 ETLDASGLKQCFQRKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKIL 267
DA ++ FQR + +E+VAL GAH LG G+ P VF N +Y L
Sbjct: 144 ADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL 203
Query: 268 LEKPW---------QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAY 318
L + W + S + LP+D +L++D + L +K YA++Q+ FF+DF A+
Sbjct: 204 LNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAF 263
Query: 319 VKLVNSG 325
KL+ G
Sbjct: 264 EKLLEDG 270
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDYDKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDMDKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P F N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 39 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 98
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 99 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 157
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 158 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 217
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 218 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 270
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA++ +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWYTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEDG 273
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G +++LA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVKLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 44 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 103
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 104 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 162
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 222
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP++ +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 223 NEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP++ +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLGTK-----GFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+ +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNP-----IVFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP++ +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++ LA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVALAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 41 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 100
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 101 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 159
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N Y LL + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEGYLNLLNEDWKLEKNDAN 219
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 220 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 273
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 44 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 103
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 104 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 162
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 163 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 222
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+ +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 223 NEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 276
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++ LA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVLLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+ +GT++ DN+GG G E P NAGL K LE +
Sbjct: 43 GYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 102
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 103 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 161
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GAH LG G+ P VF N +Y LL + W
Sbjct: 162 RLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 221
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 222 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 275
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 38 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 97
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 98 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 156
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GA LG G+ P VF N +Y LL + W
Sbjct: 157 RLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 216
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 270
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVN 174
G ++RLA+H +GT++ DN+GG G E P NAGL K LE +
Sbjct: 39 GYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP 98
Query: 175 AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCFQ 230
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ FQ
Sbjct: 99 WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQ 157
Query: 231 RKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW-------- 272
R + +E+VAL GA LG G+ P VF N +Y LL + W
Sbjct: 158 RLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDAN 217
Query: 273 -QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 218 NEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 29/235 (12%)
Query: 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELER----PENAGLNKPLKILEKAKGDV 173
G ++RLA+H +GT++ DN+GG G Y ++ P NAGL K LE +
Sbjct: 39 GYGPVLVRLAWHISGTWDKHDNTGGSYGG-TYRFKKQFNDPSNAGLQNGFKFLEPIHKEF 97
Query: 174 NAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSME---PDPEGKLPQETLDASGLKQCF 229
I D+ +LGG AV GP IP GR+D+ E PD G+LP DA ++ F
Sbjct: 98 PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFF 156
Query: 230 QRKGFSAQELVALSGAHTLG-----TKGFGNPI-----VFDNSYYKILLEKPW------- 272
QR + +E+VAL GA LG G+ P VF N +Y LL + W
Sbjct: 157 QRLNMNDREVVALMGAGALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 216
Query: 273 --QSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ S + LP+D +L++D + L +K YA++Q+ FF+DF A+ KL+ +G
Sbjct: 217 NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENG 271
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 121/244 (49%), Gaps = 44/244 (18%)
Query: 123 VLRLAFHDAGTF----EMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAI 176
++RL +HDAGT+ E GG NGS+ + EL+ NAGL L +L+ K + +
Sbjct: 28 MVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAGLVNALNLLKPIKDKYSGV 87
Query: 177 R-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQ--ETLDASGLKQCFQ 230
D+ L A A+ GGP IP+ GR+D EP+ EG+LP A L+ F
Sbjct: 88 TYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVFY 147
Query: 231 RKGFSAQELVALSGAHTLGTK-----GFGNP---------------------IVFDNSYY 264
R G + +E+VALSGAHTLG G+G P + FDNSY+
Sbjct: 148 RMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYF 207
Query: 265 KILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNS 324
K + E+ ++ LP+D AL ED + + YA + FF+D+ A+ KL N
Sbjct: 208 KDIKER------RDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNL 261
Query: 325 GARW 328
GA++
Sbjct: 262 GAKF 265
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 31/235 (13%)
Query: 122 SVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE-----NAGLNKPLKILEKAKGDVNAI 176
S++RLA+H+A +++ G N + + +PE N GL+ P K LE K I
Sbjct: 29 SLIRLAWHEAASYDCFKKDGSPNSASMRF--KPECLYAGNKGLDIPRKALETLKKKYPQI 86
Query: 177 R-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCFQRK 232
D+ L VA+ GGP IP GR+D+ + P+G+LP + S +++ F+R
Sbjct: 87 SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRL 146
Query: 233 GFSAQELVALSGAHTLGTK-----GFGNPIV-----FDNSYYKILLEKPWQSSAGMSSM- 281
GF+ QE VAL GAHT G G+ P FDNS++ LL++ W + + M
Sbjct: 147 GFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQ 206
Query: 282 ---------IGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGAR 327
+ LPSD L+ D +++++YA + + F +DF NA+ KL G R
Sbjct: 207 LMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 261
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 31/235 (13%)
Query: 122 SVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE-----NAGLNKPLKILEKAKGDVNAI 176
S++RLA+H+A +++ G N + + +PE N GL+ P K LE K I
Sbjct: 28 SLIRLAWHEAASYDCFKKDGSPNSASMRF--KPECLYAGNKGLDIPRKALETLKKKYPQI 85
Query: 177 R-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCFQRK 232
D+ L VA+ GGP IP GR+D+ + P+G+LP + S +++ F+R
Sbjct: 86 SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRL 145
Query: 233 GFSAQELVALSGAHTLGT-----KGFGNPIV-----FDNSYYKILLEKPWQSSAGMSSM- 281
GF+ QE VAL GAHT G G+ P FDNS++ LL++ W + + M
Sbjct: 146 GFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQ 205
Query: 282 ---------IGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGAR 327
+ LPSD L+ D +++++YA + + F +DF NA+ KL G R
Sbjct: 206 LMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 260
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 31/235 (13%)
Query: 122 SVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE-----NAGLNKPLKILEKAKGDVNAI 176
S++RLA+H+A +++ G N + + +PE N GL+ P K LE K I
Sbjct: 29 SLIRLAWHEAASYDCFKKDGSPNSASMRF--KPECLYAGNKGLDIPRKALETLKKKYPQI 86
Query: 177 R-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCFQRK 232
D+ L VA+ GGP IP GR+D+ + P+G+LP + S +++ F+R
Sbjct: 87 SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRL 146
Query: 233 GFSAQELVALSGAHTLGT-----KGFGNPIV-----FDNSYYKILLEKPWQSSAGMSSM- 281
GF+ QE VAL GAHT G G+ P FDNS++ LL++ W + + M
Sbjct: 147 GFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQ 206
Query: 282 ---------IGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGAR 327
+ LPSD L+ D +++++YA + + F +DF NA+ KL G R
Sbjct: 207 LMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTR 261
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 105/265 (39%), Gaps = 76/265 (28%)
Query: 121 ASVLRLAFHDAGTFEMD-----DNSGGMNGSIVYELERPENAGLNKPLKILEKAKGDVNA 175
AS++RL FHD D DNSG SI+ E NA + +++ K +
Sbjct: 36 ASLIRLHFHDCFVLGCDASILLDNSG----SIISEKNAGPNANSARGFNVVDNIKTALEN 91
Query: 176 IRP------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG---KLPQETLDASGLK 226
P D++AL +VS+ GGP+ V +GR D++ + G +P T S +
Sbjct: 92 ACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNIT 151
Query: 227 QCFQRKGFSAQELVALSGAHTLG------------------------------------- 249
F G + +LVALSGAHT G
Sbjct: 152 SKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCP 211
Query: 250 TKGFGN---------PIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRAL--VEDDECLR 298
KG G+ P FDN+Y+ L QS+ G+ L SD+ L +
Sbjct: 212 QKGRGSGSTNLDLSTPDAFDNNYFTNL-----QSNNGL-----LQSDQELFSTTGSATIA 261
Query: 299 WIKMYADNQNMFFEDFKNAYVKLVN 323
+ +A NQ +FF+ F + + + N
Sbjct: 262 IVTSFASNQTLFFQAFAQSMINMGN 286
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 106/273 (38%), Gaps = 71/273 (26%)
Query: 107 MKEEVTKVVSKGK--AASVLRLAFHDA------GTFEMDDNSGGMNGSIVYELERPENAG 158
+K V V+K AS+LRL FHD + +DD S + E NA
Sbjct: 18 IKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTS-----NFTGEKTAGPNAN 72
Query: 159 LNKPLKILEKAKGDVNAIRP------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD-- 210
+ ++++ K V ++ P D++A+ +V GG + V +GR DS
Sbjct: 73 SIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLS 132
Query: 211 -PEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLG--------TKGFG------- 254
LP + SGL F KGF+ +ELV LSGAHT+G T+ +
Sbjct: 133 SANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYNESNIDPT 192
Query: 255 ------------------------NPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRAL 290
P FDN+YY L K G+ L SD+ L
Sbjct: 193 YAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK-----GL-----LHSDQQL 242
Query: 291 VEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN 323
+ Y++N F DF NA +K+ N
Sbjct: 243 FNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGN 275
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 58/256 (22%)
Query: 121 ASVLRLAFHDA------GTFEMDDNSGGMNGSIVYELERPENAGLNKPLKILEKAKGDVN 174
AS++RL FHD + +DD GSI E N + +++ K +
Sbjct: 35 ASLIRLHFHDCFVNGCDASILLDDT-----GSIQSEKNAGPNVNSARGFNVVDNIKTALE 89
Query: 175 AIRP------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG---KLPQETLDASGL 225
P D++AL +VS+ GGP+ V +GR DS+ + G +P S +
Sbjct: 90 NACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNI 149
Query: 226 KQCFQRKGFSAQELVALSGAHTLGT-------------KGFGNPIVFDNSYYKILLEK-- 270
F G + +LVALSGAHT G G GNP NS L++
Sbjct: 150 TFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLC 209
Query: 271 PWQSSAGMSSMI--------------GLPSDRALVEDDE---------CLRWIKMYADNQ 307
P SA + + L S+ L++ D+ + + +A NQ
Sbjct: 210 PQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQ 269
Query: 308 NMFFEDFKNAYVKLVN 323
+FF+ F + + + N
Sbjct: 270 TLFFQAFAQSMINMGN 285
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V+L +H++ GT P VFD+ ++
Sbjct: 162 VVSLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 36/132 (27%)
Query: 122 SVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIR-- 177
S+L+LA +DA T++ SGG NGSI + EL R EN GL+ L ++E+ K ++++I
Sbjct: 34 SLLKLALNDAXTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISKG 93
Query: 178 -----PDMIALGG---------AVAVSVCGGPN------------------IPVPMGRLD 205
D+I L G A A+ CGG GR D
Sbjct: 94 GPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSD 153
Query: 206 SMEPDPEGKLPQ 217
+ E DPEG++PQ
Sbjct: 154 ATEADPEGRVPQ 165
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 50/255 (19%)
Query: 121 ASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLN--KPLKILEKAKGDVNAIRP 178
AS++RL FHD + D S +N + E E+ +N + L ++ K V P
Sbjct: 34 ASLMRLHFHDCFV-QGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCP 92
Query: 179 D------MIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCF 229
D ++A+ +A + GGP PVP+GR DS+ + LP + + LK F
Sbjct: 93 DTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASF 152
Query: 230 QRKGFSAQELVALSGAHTLGT-------------KGFGNP-IVFDNSYYKILLEKPWQSS 275
+G + +LV LSG HT G GNP + +Y ++L + Q++
Sbjct: 153 AVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNA 212
Query: 276 AG--MSSM-IGLP-------------------SDRALVEDD--ECLRWIKMYADNQNMFF 311
G ++++ + P SD+ L + + + ++ NQN FF
Sbjct: 213 TGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFF 272
Query: 312 EDFKNAYVKLVNSGA 326
+F+ + +K+ N G
Sbjct: 273 SNFRVSMIKMGNIGV 287
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVYLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPQVFDSQFF 198
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPQDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEGFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAAAKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P+ + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFF 198
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDVNAIRPD 179
LRL FHDA F GG +GSI+ E P NAG+++ + + N D
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 180 MIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQE 238
I GAV VS C GG IP +GR D++ P+ +P + GFS E
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPGPFDSVDSILARMGDAGFSPVE 161
Query: 239 LVALSGAHTL-----------GTKGFGNPIVFDNSYY 264
+V L +H++ GT P VFD+ ++
Sbjct: 162 VVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFF 198
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPE---GKLPQETLDASGLKQC 228
P D++ + +V++ GGP+ VP+GR DS++ + LPQ LK
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDS 152
Query: 229 FQRKGFS-AQELVALSGAHTLG 249
F+ G + + +LVALSG HT G
Sbjct: 153 FRNVGLNRSSDLVALSGGHTFG 174
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALSGGHTFG 173
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALSGGHTFG 173
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQ---- 148
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 149 ---LKDSFRNVGLNRSSDLVALSGGHTFG 174
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 148
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 149 ---LKDSFRNVGLNRSSDLVALSGGHTFG 174
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALSGGHTFG 173
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFHDCFVNGCDA-SILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 148
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 149 ---LKDSFRNVGLNRSSDLVALSGGHTFG 174
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 148
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 149 ---LKDSFRNVGLNRSSDLVALSGGHTFG 174
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG H+ G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALSGGHSFG 173
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL FHD D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILRLHFHDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVAL G HT G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALYGGHTFG 173
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+LRL F D D S ++ + + E+ NA + ++++ K V +
Sbjct: 34 AASILRLHFEDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 92
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 93 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 148
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 149 ---LKDSFRNVGLNRSSDLVALSGGHTFG 174
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 66/260 (25%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKPLKILEKAKGDVNAIRP- 178
AAS++RL FHD D S ++G+ +L P N + ++++ K V P
Sbjct: 33 AASLIRLHFHDCFVNGCDA-SLLLDGADSEKLAIP-NINSARGFEVIDTIKAAVENACPG 90
Query: 179 -----DMIALGGAVAVSVCGGPNIPVPMGRLDSM--EPDPEGKLPQ--ETLDASGLKQCF 229
D++ L +V + GGP V +GR D + + LP E LDA K F
Sbjct: 91 VVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAK--F 148
Query: 230 QRKGFSAQELVALSGAHTLGT-------------KGFGNP-------------------- 256
+ ++VALSGAHT G G GNP
Sbjct: 149 VAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGG 208
Query: 257 -------------IVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMY 303
FDN+Y+K LLE S S I SD A+ + + ++ Y
Sbjct: 209 NSNITAPLDRSTTDTFDNNYFKNLLEGKGLLS---SDQILFSSDLAV---NTTKKLVEAY 262
Query: 304 ADNQNMFFEDFKNAYVKLVN 323
+ +Q++FF DF A +++ N
Sbjct: 263 SRSQSLFFRDFTCAMIRMGN 282
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 120 AASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE--NAGLNKPLKILEKAKGDVNAIR 177
AAS+L L F D D S ++ + + E+ NA + ++++ K V +
Sbjct: 33 AASILSLHFEDCFV-NGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESAC 91
Query: 178 P------DMIALGGAVAVSVCGGPNIPVPMGRLDSME----------PDPEGKLPQETLD 221
P D++ + +V++ GGP+ VP+GR DS++ P P LPQ
Sbjct: 92 PRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQ---- 147
Query: 222 ASGLKQCFQRKGFS-AQELVALSGAHTLG 249
LK F+ G + + +LVALSG HT G
Sbjct: 148 ---LKDSFRNVGLNRSSDLVALSGGHTFG 173
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 117 KGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELER---PENAGLNKPLKILEKAKGDV 173
G A ++R+ FHD D S ++ + E+ P N L + +++ AK V
Sbjct: 30 SGIAPGLIRMHFHDCFVRGCDA-SVLLDSTANNTAEKDAIPNNPSL-RGFEVITAAKSAV 87
Query: 174 NAIRP------DMIALGGAVAVSVCGGPNIPVPMGRLD---SMEPDPEGKLPQETLDASG 224
A P D++A + ++ G VP GR D S+ + ++P +A+
Sbjct: 88 EAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQ 147
Query: 225 LKQCFQRKGFSAQELVALSGAHTLG 249
L F K +A E+V LSGAH++G
Sbjct: 148 LINSFANKTLTADEMVTLSGAHSIG 172
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 104/266 (39%), Gaps = 69/266 (25%)
Query: 106 LMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNK 161
+++E V + V K G AA +LRL FHD + D S ++GS E + P N L
Sbjct: 24 IVREFVQEAVRKDIGLAAGLLRLHFHDC-FVQGCDASVLLDGSATGPGEQQAPPNLTLRP 82
Query: 162 PL---------KILEKAKGDVNAIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSME---- 208
++ + +G V + D++AL +V V GGP+ VP+GR DS
Sbjct: 83 SAFKAVNDIRDRLERECRGAVVSCS-DILALAARDSVVVSGGPDYRVPLGRRDSRSFAST 141
Query: 209 PDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLG------------------- 249
D LP + + L R G A +LV +SG HT+G
Sbjct: 142 QDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFEDRLFPRPDPTI 201
Query: 250 -------------TKG--------FGNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDR 288
KG P VFDN YY L+ + G+ SD+
Sbjct: 202 SPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNR-----EGL-----FVSDQ 251
Query: 289 ALVEDDECLRWIKMYADNQNMFFEDF 314
L + ++ +A +Q FFE F
Sbjct: 252 DLFTNAITRPIVERFAQSQQDFFEQF 277
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 156 NAGLNKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEG 213
N GL++ +K L+K + + P D IA GAVA+S C G P + GR + +P P+G
Sbjct: 91 NIGLDEIVK-LQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDG 149
Query: 214 KLPQETLDASGLKQCFQRKG-FSAQELVALSGAHTLGTKGFGNPIV-----------FDN 261
+P+ + G F ELV + AH++ +P V FD+
Sbjct: 150 LVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDS 209
Query: 262 SYY--KILLEKPWQSSAG--------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFF 311
++ L + S G + I + SD + D + + +NQ+
Sbjct: 210 QFFVETQLRGTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLV 269
Query: 312 EDFKNAYVKLVNSG 325
+DF+ ++ L G
Sbjct: 270 DDFQFIFLALTQLG 283
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 95/231 (41%), Gaps = 34/231 (14%)
Query: 124 LRLAFHDAGTFE------MDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGDV 173
LR+AFHDA F GG +GSI+ EL P N GL ++ L +
Sbjct: 50 LRIAFHDAIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTVEALRAVGINH 109
Query: 174 NAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRK 232
D+I AV +S C G P + GR +S +P P +P + + F
Sbjct: 110 GVSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSSQPSPPSLIPGPGNTVTAILDRFGDA 169
Query: 233 GFSAQELVALSGAHTLGTKGFGN-----------PIVFDNSYY-KILLE---KPWQSSAG 277
GFS E+V L AH+L ++ N P VFD +Y + LL+ +P S
Sbjct: 170 GFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTPQVFDTQFYIETLLKGTTQPGPSLGF 229
Query: 278 MSSMIGLP------SDRALVEDDE-CLRWIKMYADNQNMFFEDFKNAYVKL 321
+ P SD L D RW M + N+ M + F+ A K+
Sbjct: 230 AEELSPFPGGFRIRSDALLARDSRTACRWQSMTSSNEVM-GQRFRAAMAKM 279
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 179 DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQ 237
D + GAV + C GGP + GR + +P P+G +P T A + GFS
Sbjct: 108 DFVQFAGAVGAANCAGGPRLQFLAGRSNISQPSPDGLVPDPTDSADKILARMADIGFSPT 167
Query: 238 ELVALSGAHTL-----------GTKGFGNPIVFDNSYY-KILLEKPWQSSAG-----MSS 280
E+V L +H++ G+ P VFD ++ + LL + +G MS
Sbjct: 168 EVVHLLASHSIAAQYEVDTDVAGSPFDSTPSVFDTQFFVESLLHGTQFTGSGQGGEVMSP 227
Query: 281 MIG---LPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSG 325
+ G L SD AL D + +NQ +F+ +L G
Sbjct: 228 IPGEFRLQSDFALSRDPRTACEWQALVNNQQAMVNNFEAVMSRLAVIG 275
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 156 NAGLNKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEG 213
N GL++ +K L+K + + P D IA GAVA+S C G P + GR + +P P+G
Sbjct: 91 NIGLDEIVK-LQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDG 149
Query: 214 KLPQETLDASGLKQCFQRKG-FSAQELVALSGAHTL-----------GTKGFGNPIVFDN 261
+P+ + G F ELV + AH++ G P +FD+
Sbjct: 150 LVPEPFHTVDQIINRVNDAGEFDELELVFMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDS 209
Query: 262 SYY--KILLEKPWQSSAG--------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFF 311
++ L + S G + I + SD + D + + +NQ+
Sbjct: 210 QFFVETQLRGTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLV 269
Query: 312 EDFKNAYVKLVNSG 325
+DF+ ++ L G
Sbjct: 270 DDFQFIFLALTQLG 283
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 156 NAGLNKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEG 213
N GL++ +K L+K + + P D IA GAVA+S C G P + GR + +P P+G
Sbjct: 91 NIGLDEIVK-LQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDG 149
Query: 214 KLPQETLDASGLKQCFQRKG-FSAQELVALSGAHTL-----------GTKGFGNPIVFDN 261
+P+ + G F ELV + AH++ G P +FD+
Sbjct: 150 LVPEPFHTVDQIINRVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDS 209
Query: 262 SYY--KILLEKPWQSSAG--------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFF 311
++ L + S G + I + SD + D + + +NQ+
Sbjct: 210 QFFVETQLRGTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLV 269
Query: 312 EDFKNAYVKLVNSG 325
+DF+ ++ L G
Sbjct: 270 DDFQFIFLALTQLG 283
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 31/197 (15%)
Query: 156 NAGLNKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEG 213
N GL++ + ++K + + P D IA GAVA+S C G P + GR + +P P+G
Sbjct: 84 NIGLDE-VVAMQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRKPATQPAPDG 142
Query: 214 KLPQETLDASGLKQCFQRKG-FSAQELVALSGAHTL-----------GTKGFGNPIVFDN 261
+P+ + G F ELV + AH++ G P +FD+
Sbjct: 143 LVPEPFHTVDQIIARVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDS 202
Query: 262 SYYKILLEKPWQSS-------------AGMSSMIGLPSDRALVEDDECLRWIKMYADNQN 308
++ +E ++ + +GM+ I + +D L D + + NQ+
Sbjct: 203 QFF---VETQFRGTLFPGSGGNQGEVESGMAGEIRIQTDHTLARDSRTACEWQSFVGNQS 259
Query: 309 MFFEDFKNAYVKLVNSG 325
+DF+ ++ L G
Sbjct: 260 KLVDDFQFIFLALTQLG 276
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 35/242 (14%)
Query: 118 GKAASVLRLAFHDAGTF------EMDDNSGGMNGSIV----YELERPENAGLNKPLKILE 167
+A LR+ FHD+ + GG +GSI+ E N GL++ + I +
Sbjct: 37 AEAHEALRMVFHDSIAISPKLQSQGKFGGGGADGSIITFSSIETTYHPNIGLDEVVAIQK 96
Query: 168 KAKGDVNAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQ--ETLDASG 224
D IA GAV VS C G P + +GR ++ + P+G +P+ T+D
Sbjct: 97 PFIAKHGVTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQAAPDGLVPEPFHTIDQV- 155
Query: 225 LKQCFQRKGFSAQELVALSGAHTLGTKGFGNPIV-----------FDNSYY--KILLEKP 271
L + GF E V L AH++ +P + FD+ ++ L
Sbjct: 156 LARMLDAGGFDEIETVXLLSAHSIAAANDVDPTISGLPFDSTPGQFDSQFFVETQLRGTA 215
Query: 272 WQSSAGMSSMIGLP--------SDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN 323
+ G+ + P +D D + + +NQ EDF+ + L
Sbjct: 216 FPGKTGIQGTVMSPLKGEMRLQTDHLFARDSRTACEWQSFVNNQTKLQEDFQFIFTALST 275
Query: 324 SG 325
G
Sbjct: 276 LG 277
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 100/263 (38%), Gaps = 38/263 (14%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNS---GGMNGS-IVYELERPE---NAGL 159
++E + + A V+RL FHDA GG +GS +++ P N G+
Sbjct: 24 LQETIFQNECGQDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGI 83
Query: 160 NKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQ 217
+ + L N I D++ GAVA+S C G P + GR + +G +P+
Sbjct: 84 DDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPE 143
Query: 218 ETLDASGLKQCFQRK-GFSAQELVALSGAH----------TLGTKGF-GNPIVFDNSYYK 265
+ + Q F+ GF+ E+V+L +H T+ F P FD +
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQVFL 203
Query: 266 ILLEK--PWQSSAGMSSMIGLP---------------SDRALVEDDECLRWIKMYADNQN 308
+L K + SA + + P SD AL D + + + Q
Sbjct: 204 EVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQA 263
Query: 309 MFFEDFKNAYVKLVNSGARWRSL 331
F+ A KL G SL
Sbjct: 264 FMAASFRAAMSKLAVLGHNRNSL 286
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 100/263 (38%), Gaps = 38/263 (14%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNS---GGMNGS-IVYELERPE---NAGL 159
++E + + A V+RL FHDA GG +GS +++ P N G+
Sbjct: 24 LQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGI 83
Query: 160 NKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQ 217
+ + L N I D++ GAVA+S C G P + GR + +G +P+
Sbjct: 84 DDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPE 143
Query: 218 ETLDASGLKQCFQRK-GFSAQELVALSGAH----------TLGTKGF-GNPIVFDNSYYK 265
+ + Q F+ GF+ E+V+L +H T+ F P FD +
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDSTPFTFDTQVFL 203
Query: 266 ILLEK--PWQSSAGMSSMIGLP---------------SDRALVEDDECLRWIKMYADNQN 308
+L K + SA + + P SD AL D + + + Q
Sbjct: 204 EVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQA 263
Query: 309 MFFEDFKNAYVKLVNSGARWRSL 331
F+ A KL G SL
Sbjct: 264 FMAASFRAAMSKLAVLGHNRNSL 286
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 100/263 (38%), Gaps = 38/263 (14%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNS---GGMNGS-IVYELERPE---NAGL 159
++E + + A V+RL FHDA GG +GS +++ P N G+
Sbjct: 24 LQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGI 83
Query: 160 NKPLKILEKAKGDVNAIRP-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQ 217
+ + L N I D++ GAVA+S C G P + GR + +G +P+
Sbjct: 84 DDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPE 143
Query: 218 ETLDASGLKQCFQRK-GFSAQELVALSGAH----------TLGTKGF-GNPIVFDNSYYK 265
+ + Q F+ GF+ E+V+L +H T+ F P FD +
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFL 203
Query: 266 ILLEK--PWQSSAGMSSMIGLP---------------SDRALVEDDECLRWIKMYADNQN 308
+L K + SA + + P SD AL D + + + Q
Sbjct: 204 EVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDPRTACIWQGFVNEQA 263
Query: 309 MFFEDFKNAYVKLVNSGARWRSL 331
F+ A KL G SL
Sbjct: 264 FMAASFRAAMSKLAVLGHNRNSL 286
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 123 VLRLAFHDAGTFE------MDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGD 172
+LR+ FHDA F GG +GSI+ EL P N GL ++ L +
Sbjct: 50 ILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTIEALRAVGIN 109
Query: 173 VNAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR 231
D+I AV +S C G P + GR +S +P P +P + +
Sbjct: 110 HGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSLIPGPGNTVTAILDRMGD 169
Query: 232 KGFSAQELVALSGAHTLGTKG------FGNPI-----VFDNSYY-KILLE---KPWQSSA 276
GFS E+V L AH+L ++ F +P+ VFD +Y + LL+ +P S
Sbjct: 170 AGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTPQVFDTQFYIETLLKGTTQPGPSLG 229
Query: 277 GMSSMIGLP------SDRALVEDDE-CLRWIKMYADNQNM 309
+ P SD L D RW M + N+ M
Sbjct: 230 FAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSSNEVM 269
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 123 VLRLAFHDAGTFE------MDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGD 172
+LR+ FHDA F GG +GSI+ EL P N GL ++ L +
Sbjct: 49 ILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTVEALRAVGIN 108
Query: 173 VNAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR 231
D+I AV +S C G P + GR +S +P P +P + +
Sbjct: 109 HGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSLIPGPGNTVTAILDRMGD 168
Query: 232 KGFSAQELVALSGAHTLGTKGFGN-----------PIVFDNSYY-KILLE---KPWQSSA 276
GFS E+V L AH+L ++ N P VFD +Y + LL+ +P S
Sbjct: 169 AGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTPQVFDTQFYIETLLKGTTQPGPSLG 228
Query: 277 GMSSMIGLP------SDRALVEDDE-CLRWIKMYADNQNM 309
+ P SD L D RW M + N+ M
Sbjct: 229 FAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSSNEVM 268
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 87/220 (39%), Gaps = 33/220 (15%)
Query: 123 VLRLAFHDAGTFE------MDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGD 172
+LR+ FHDA F GG +GSI+ EL P N GL ++ L +
Sbjct: 49 ILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTVEALRAVGIN 108
Query: 173 VNAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR 231
D+I AV +S C G P + GR S +P P +P + +
Sbjct: 109 HGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSSQPSPPSLIPGPGNTVTAILDRMGD 168
Query: 232 KGFSAQELVALSGAHTLGTKGFGN-----------PIVFDNSYY-KILLE---KPWQSSA 276
GFS E+V L AH+L ++ N P VFD +Y + LL+ +P S
Sbjct: 169 AGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDSTPQVFDTQFYIETLLKGTTQPGPSLG 228
Query: 277 GMSSMIGLP------SDRALVEDDE-CLRWIKMYADNQNM 309
+ P SD L D RW M + N+ M
Sbjct: 229 FAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSSNEVM 268
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + PENA L+K ++L K AI
Sbjct: 107 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPENANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 73 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 132
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 133 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 164
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAAS-VLRLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S ++ A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 435 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 492
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 493 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 549
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 52/255 (20%)
Query: 121 ASVLRLAFHDAGTFEMDDNSGGMNG---SIVYELERPENAGLNKPLKILEKAKGDV-NAI 176
+ ++ +A+ A TF D GG NG +++ + + NA + L +LEK + + A
Sbjct: 48 SELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKAS 107
Query: 177 RPDMIALGGAVAV---SVCGGPNIPVPM--GRLDS------------MEPDPEG-KLPQE 218
D+I L G V V + G +I VP GR+D+ +EP +G + +
Sbjct: 108 LADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRA 167
Query: 219 TLDASGLKQCF----QRKGFSAQELVALS------GAHTLGTKG--FGNPI-VFDNSYYK 265
LD S + Q+ +A E+ AL GA+ G+K F + + V N ++
Sbjct: 168 RLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFV 227
Query: 266 ILLEKPWQSSAGMSSM------------IGLPSDRA--LVEDDECLRWI-KMYA--DNQN 308
LL+ ++ A S + + RA + + LR + ++YA D
Sbjct: 228 NLLDMRYEWKATDESKELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHE 287
Query: 309 MFFEDFKNAYVKLVN 323
F +DF A+VK++N
Sbjct: 288 KFVKDFVAAWVKVMN 302
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A H AGT+ D GG G + PENA L+K ++L K AI
Sbjct: 107 IRMAXHSAGTYRTADGRGGAGEGQQRFAPLNSWPENANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 52/255 (20%)
Query: 121 ASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPE---NAGLNKPLKILEKAKGDV-NAI 176
+ ++ +A+ A TF D GG NG+ + + + + NA + L +LEK + + A
Sbjct: 65 SELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKAS 124
Query: 177 RPDMIALGGAVAV---SVCGGPNIPVPM--GRLDS------------MEPDPEG-KLPQE 218
D+I L G V V + G +I VP GR+D+ +EP +G + +
Sbjct: 125 LADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDIEMFELLEPIADGFRNYRA 184
Query: 219 TLDASGLKQCF----QRKGFSAQELVALS------GAHTLGTKG--FGNPI-VFDNSYYK 265
LD S + Q+ +A E+ AL GA+ G+K F + + V N ++
Sbjct: 185 RLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFDGSKNGVFTDRVGVLSNDFFV 244
Query: 266 ILLEKPWQSSAGMSSM------------IGLPSDRA--LVEDDECLRWI-KMYA--DNQN 308
LL+ ++ A S + + RA + + LR + ++YA D
Sbjct: 245 NLLDMRYEWKATDESKELFEGRDRETGEVKFTASRADLVFGSNSVLRAVAEVYASSDAHE 304
Query: 309 MFFEDFKNAYVKLVN 323
F +DF A+VK++N
Sbjct: 305 KFVKDFVAAWVKVMN 319
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A+H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEP 209
D++ L G VA+ G GR D+ EP
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEP 197
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 87/220 (39%), Gaps = 33/220 (15%)
Query: 123 VLRLAFHDAGTFE------MDDNSGGMNGSIV----YELERPENAGLNKPLKILEKAKGD 172
+LR+ FHDA F GG +GSI+ EL P N GL ++ L +
Sbjct: 48 ILRIVFHDAIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTVEALRAVGIN 107
Query: 173 VNAIRPDMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR 231
D+I AV +S C G P + GR +S +P P +P + +
Sbjct: 108 HGVSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSLIPGPGNTVTAILDRMGD 167
Query: 232 KGFSAQELVALSGAHTLGTKGFGN-----------PIVFDNSYY-KILLE---KPWQSSA 276
GFS E+V L A +L ++ N P VFD +Y + LL+ +P S
Sbjct: 168 AGFSPDEVVDLLAAXSLASQEGLNSAIFRSPLDSTPQVFDTQFYIETLLKGTTQPGPSLG 227
Query: 277 GMSSMIGLP------SDRALVEDDE-CLRWIKMYADNQNM 309
+ P SD L D RW M + N+ M
Sbjct: 228 FAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSSNEVM 267
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAXHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D++ L G VA+ G GR D+ EP+
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEPE 198
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 124 LRLAFHDAGTFEMDDNSGGM-NGSIVYEL--ERPENAGLNKPLKILEKAKGDV-NAIR-P 178
+R+A H AGT+ D GG G + P+NA L+K ++L K AI
Sbjct: 107 IRMAXHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWA 166
Query: 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEP 209
D++ L G VA+ G GR D+ EP
Sbjct: 167 DLLILTGNVALESMGFKTFGFAGGRADTWEP 197
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 113 KVVSKGKAASVL-RLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLK 164
KV++ G S L A+ A TF D GG NG+ + +E +PE L L+
Sbjct: 469 KVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQ--LAAVLE 526
Query: 165 ILEKAKGDVNAIR--------PDMIALGGAVAVSVC---GGPNIPVPM--GRLDSME 208
LE + N + D+I L G V G + VP GR D+ +
Sbjct: 527 TLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 123 VLRLAFHDAGTFEMDDNSGGM---NGSIVYELERPENAGLNKPLKILE--KAKGDVNAIR 177
++RL +H AGT+ + D GG N P+N L+K ++L K K
Sbjct: 88 MIRLTWHAAGTYRIADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSW 147
Query: 178 PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D+IA G +A G GR D P+
Sbjct: 148 ADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE 180
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 105/257 (40%), Gaps = 55/257 (21%)
Query: 121 ASVLRLAFHDAGTFEMDDNSGGMNGSIV-------YELERPENAGLNKPLKILEKAKGDV 173
+ ++ A+ A T+ D GG NG+ + +E P+ L K L +LE
Sbjct: 460 SELVSTAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDR--LPKVLAVLEGISAAT 517
Query: 174 NAIRPDMIALGGAVAV---SVCGGPNIPVPM--GRLDSM--EPDPEGKLPQETLD---AS 223
A D+I L G V V + G I +P GR D+ + D E E + A+
Sbjct: 518 GATVADVIVLAGNVGVEQKARAAGVEIVLPFAPGRGDATAEQTDTESFAVLEPIHDAIAT 577
Query: 224 G--------LKQC----FQRKGFSAQEL-VALSGAHTLGTKGFGNP-IVF-------DNS 262
G LK C Q G +A E+ V + G LGT G +VF N
Sbjct: 578 GSSRTMRQRLKNCCLIATQLLGLTAPEMTVLIGGLRVLGTNHGGTKHVVFTDREGVLTND 637
Query: 263 YYKIL-----LEKP-----WQSSAGMSSMIGLPSDRA--LVEDDECLR-WIKMYA--DNQ 307
++ L L KP ++ ++ + + R + + LR + ++YA DN+
Sbjct: 638 FFVNLTDMNYLWKPAGKNLYEICDRKTNQVKWTATRVDLVFGSNSILRAYSELYAQDDNK 697
Query: 308 NMFFEDFKNAYVKLVNS 324
F DF A+ K++N+
Sbjct: 698 EKFVRDFVAAWTKVMNA 714
>pdb|2XW7|A Chain A, Structure Of Mycobacterium Smegmatis Putative Reductase
Ms0308
pdb|2XW7|B Chain B, Structure Of Mycobacterium Smegmatis Putative Reductase
Ms0308
Length = 178
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 152 ERPENAGLNKPLKILEKAKGDVNAIRPDMIALGGAVAVSVCGGPNI 197
RPE A + P+++ GDV + P+++A G V V GG ++
Sbjct: 78 HRPEIAAESHPMQVF---SGDVAELHPELVAAAGGKDVWVVGGGDV 120
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 54/176 (30%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ D G +R P+NA L+K ++L K K
Sbjct: 91 IRMAWHSAGTYRTADGR----GGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQK 146
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD------PEGKL-PQETLDASG--- 224
D++ L G VA+ G GR D+ E D PE + QE D G
Sbjct: 147 ISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQ 206
Query: 225 ------------------------------LKQCFQRKGFSAQELVAL-SGAHTLG 249
++Q F R + +E AL +G HT G
Sbjct: 207 EGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRAAMNDKETAALIAGGHTFG 262
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKP---- 162
+KEE+ + S + +++ A+ A T+ D GG NG+ + LE +N +N+P
Sbjct: 449 LKEEI--LDSDLSVSQLVKTAWASASTYRDSDKRGGANGARL-RLEPQKNWEVNEPEQLE 505
Query: 163 --LKILEKAKGDVNAIR--------PDMIALGG---AVAVSVCGGPNIPVPM--GRLDS 206
L LE + + N R D+I LGG + G ++ +P GR+D+
Sbjct: 506 TVLGTLENIQTEFNDSRSDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA 564
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 54/176 (30%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ D G +R P+NA L+K ++L K K
Sbjct: 91 IRMAWHSAGTYRTADGR----GGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQK 146
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD------PEGKL-PQETLDASG--- 224
D++ L G VA+ G GR D+ E D PE + QE D G
Sbjct: 147 ISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQ 206
Query: 225 ------------------------------LKQCFQRKGFSAQELVAL-SGAHTLG 249
++Q F R + +E AL +G HT G
Sbjct: 207 EGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKP---- 162
+KEE+ + S + +++ A+ A T+ D GG NG+ + LE +N +N+P
Sbjct: 449 LKEEI--LDSDLSVSQLVKTAWASASTYRDSDKRGGANGARL-RLEPQKNWEVNEPEQLE 505
Query: 163 --LKILEKAKGDVNAIR--------PDMIALGG---AVAVSVCGGPNIPVPM--GRLDS 206
L LE + + N R D+I LGG + G ++ +P GR+D+
Sbjct: 506 TVLGTLENIQTEFNDSRSDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA 564
>pdb|2VTV|A Chain A, Phaz7 Depolymerase From Paucimonas Lemoignei
pdb|2VTV|B Chain B, Phaz7 Depolymerase From Paucimonas Lemoignei
pdb|2X5X|A Chain A, The Crystal Structure Of Phaz7 At Atomic (1.2 Angstrom)
Resolution Reveals Details Of The Active Site And
Suggests A Substrate Binding Mode
pdb|2X76|A Chain A, The Crystal Structure Of Phaz7 At Atomic (1.2 Angstrom)
Resolution Reveals Details Of The Active Site And
Suggests A Substrate Binding Mode
Length = 342
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 224 GLKQCFQRKGFSAQELVALSGAHTLGTKGFGNPIVF----DNSYYKILLEKPWQSSAGMS 279
GL C+ A + A T G++ + N F + YY + + PW S +
Sbjct: 167 GLYSCYYTG-------YANAAAPTCGSQNYYNSYTFGFFPEGWYYGVWVSNPWTGSGSTN 219
Query: 280 SMIGLPSDRALVE 292
SM +P+ R V
Sbjct: 220 SMRDMPAKRTAVS 232
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 54/176 (30%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ D G +R P+NA L+K ++L K K
Sbjct: 91 IRMAWHSAGTYRTADGR----GGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQK 146
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD------PEGKL-PQETLDASG--- 224
D++ L G VA+ G GR D+ E D PE + QE D G
Sbjct: 147 ISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQ 206
Query: 225 ------------------------------LKQCFQRKGFSAQELVAL-SGAHTLG 249
++Q F R + +E AL +G HT G
Sbjct: 207 EGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKP---- 162
+KEE+ + S + +++ A+ A T+ D GG NG+ + LE +N +N+P
Sbjct: 449 LKEEI--LDSDLSVSQLVKTAWASASTYRDSDKRGGANGARL-RLEPQKNWEVNEPEQLE 505
Query: 163 --LKILEKAKGDVNAIR--------PDMIALGG---AVAVSVCGGPNIPVPM--GRLDS 206
L LE + + N R D+I LGG + G ++ +P GR+D+
Sbjct: 506 TVLGTLENIQTEFNDSRSDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA 564
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 54/176 (30%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ D G +R P+NA L+K ++L K K
Sbjct: 91 IRMAWHSAGTYRTADGR----GGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQK 146
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD------PEGKL-PQETLDASG--- 224
D++ L G VA+ G GR D+ E D PE + QE D G
Sbjct: 147 ISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQ 206
Query: 225 ------------------------------LKQCFQRKGFSAQELVAL-SGAHTLG 249
++Q F R + +E AL +G HT G
Sbjct: 207 EGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKP---- 162
+KEE+ + S + +++ A+ A T+ D GG NG+ + LE +N +N+P
Sbjct: 449 LKEEI--LDSDLSVSQLVKTAWASASTYRDSDKRGGANGARL-RLEPQKNWEVNEPEQLE 505
Query: 163 --LKILEKAKGDVNAIR--------PDMIALGG---AVAVSVCGGPNIPVPM--GRLDS 206
L LE + + N R D+I LGG + G ++ +P GR+D+
Sbjct: 506 TVLGTLENIQTEFNDSRSDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA 564
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 54/176 (30%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ D G +R P+NA L+K ++L K K
Sbjct: 91 IRMAWHSAGTYRTADGR----GGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQK 146
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD------PEGKL-PQETLDASG--- 224
D++ L G VA+ G GR D+ E D PE + QE D G
Sbjct: 147 ISWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQ 206
Query: 225 ------------------------------LKQCFQRKGFSAQELVAL-SGAHTLG 249
++Q F R + +E AL +G HT G
Sbjct: 207 EGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFG 262
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 107 MKEEVTKVVSKGKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLNKP---- 162
+KEE+ + S + +++ A+ A T+ D GG NG+ + LE +N +N+P
Sbjct: 449 LKEEI--LDSDLSVSQLVKTAWASASTYRDSDKRGGANGARL-RLEPQKNWEVNEPEQLE 505
Query: 163 --LKILEKAKGDVNAIR--------PDMIALGG---AVAVSVCGGPNIPVPM--GRLDS 206
L LE + + N R D+I LGG + G ++ +P GR+D+
Sbjct: 506 TVLGTLENIQTEFNDSRSDGTQVSLADLIVLGGNAAVEQAAANAGYDVEIPFEPGRVDA 564
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 220 LDASGLKQCFQRKGFSAQELVALSGAHTLGTKGFGNPIVFDNSYYKILLEKPWQSSAG 277
D GL F ++G + + + TL +G+GN IV + + L++ W + G
Sbjct: 252 FDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLS---HDVFLKQMWAKNGG 306
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ + D G ++R P+NA L+K ++L K K
Sbjct: 103 IRMAWHAAGTYRIHDGR----GGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKK 158
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D+I G A+ G GR+D EPD
Sbjct: 159 LSWADLIVFAGNCALESMGFKTFGFGFGRVDQWEPD 194
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ + D G ++R P+NA L+K ++L K K
Sbjct: 103 IRMAWHAAGTYRIHDGR----GGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKK 158
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D+I G A+ G GR+D EPD
Sbjct: 159 LSWADLIVFAGNCALESMGFKTFGFGFGRVDQWEPD 194
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 124 LRLAFHDAGTFEMDDNSGGMNGSIVYELER-------PENAGLNKPLKILE--KAKGDVN 174
+R+A+H AGT+ + D G ++R P+NA L+K ++L K K
Sbjct: 106 IRMAWHAAGTYRIHDGR----GGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKK 161
Query: 175 AIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD 210
D+I G A+ G GR+D EPD
Sbjct: 162 LSWADLIVFAGNCALESMGFKTFGFGFGRVDQWEPD 197
>pdb|2USH|A Chain A, 5'-Nucleotidase From E. Coli
pdb|2USH|B Chain B, 5'-Nucleotidase From E. Coli
pdb|1USH|A Chain A, 5'-Nucleotidase From E. Coli
Length = 550
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 166 LEKAKGDVNAIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
L K V+ IR ++ A GG+V + G N VP L EPD G
Sbjct: 56 LAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRG 103
>pdb|1OID|A Chain A, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OID|B Chain B, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OIE|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (S228c, P513c)
Length = 532
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 173 VNAIRPDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG 213
V+ IR ++ A GG+V + G N VP L EPD G
Sbjct: 38 VDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRG 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,732,288
Number of Sequences: 62578
Number of extensions: 355034
Number of successful extensions: 1217
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 187
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)