Query 020115
Match_columns 331
No_of_seqs 162 out of 1452
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 1.9E-60 4.2E-65 446.3 18.8 223 102-330 15-251 (251)
2 PLN02608 L-ascorbate peroxidas 100.0 5.1E-60 1.1E-64 450.6 20.4 222 103-330 13-248 (289)
3 cd00693 secretory_peroxidase H 100.0 2.5E-60 5.3E-65 455.8 17.9 219 93-329 4-286 (298)
4 PLN03030 cationic peroxidase; 100.0 1.4E-60 3.1E-65 460.2 16.3 219 93-329 27-311 (324)
5 PLN02364 L-ascorbate peroxidas 100.0 7.2E-60 1.6E-64 442.6 18.7 227 96-328 8-249 (250)
6 cd00691 ascorbate_peroxidase A 100.0 9E-60 2E-64 442.8 19.3 228 99-328 8-252 (253)
7 cd00692 ligninase Ligninase an 100.0 9.3E-56 2E-60 427.9 18.4 226 103-331 16-280 (328)
8 cd00649 catalase_peroxidase_1 100.0 4.2E-53 9E-58 416.6 14.1 263 67-329 3-398 (409)
9 cd00314 plant_peroxidase_like 100.0 2.4E-51 5.2E-56 384.2 17.5 218 106-323 2-255 (255)
10 PF00141 peroxidase: Peroxidas 100.0 1.7E-52 3.6E-57 388.5 5.2 184 107-306 1-230 (230)
11 TIGR00198 cat_per_HPI catalase 100.0 6.1E-49 1.3E-53 408.4 13.8 261 67-327 13-403 (716)
12 PRK15061 catalase/hydroperoxid 100.0 3.5E-48 7.5E-53 401.1 14.4 261 67-327 15-409 (726)
13 cd08200 catalase_peroxidase_2 100.0 8.9E-44 1.9E-48 338.4 15.3 207 119-325 29-296 (297)
14 cd08201 plant_peroxidase_like_ 100.0 2.5E-43 5.5E-48 331.4 10.8 202 118-323 40-264 (264)
15 TIGR00198 cat_per_HPI catalase 100.0 1.8E-40 3.9E-45 345.3 16.7 234 92-325 415-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.3E-38 5E-43 328.2 15.8 234 92-325 421-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 7E-35 1.5E-39 291.4 15.8 260 67-326 28-417 (730)
18 COG0376 KatG Catalase (peroxid 99.8 4.4E-19 9.6E-24 178.5 11.4 236 90-325 430-725 (730)
19 PF11172 DUF2959: Protein of u 40.3 6.2 0.00013 36.7 -1.2 13 7-19 2-14 (201)
20 PF09027 GTPase_binding: GTPas 34.8 14 0.00031 28.5 0.2 33 233-265 2-42 (66)
21 PTZ00411 transaldolase-like pr 21.8 84 0.0018 31.4 3.1 57 192-248 180-252 (333)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.9e-60 Score=446.26 Aligned_cols=223 Identities=39% Similarity=0.670 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHHHhc-CChHHHHHHHhhccccccccCCCCCCCCcccc--cccCcCcCCChhHHHHHHHHHHhhcccCc
Q 020115 102 SDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRP 178 (331)
Q Consensus 102 ~~~~iV~~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e~~c~ 178 (331)
+++.-++++|.+.+.+ +.+|.+|||+||||+||+..++.|||||||++ |+++|+|.||+.++++|++||+++..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~i~~iK~~~~~VSc 94 (251)
T PLN02879 15 KAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSY 94 (251)
T ss_pred HHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHHHHHHHHHcCCcCH
Confidence 4455667788888765 78999999999999999999999999999998 99999999998899999999999977665
Q ss_pred -hhhhhcccceeeccCCCCcCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCChhhHHHHhcCcccCCCCC----
Q 020115 179 -DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGF---- 253 (331)
Q Consensus 179 -DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsGaHTiG~~~~---- 253 (331)
|||+|||++||+.+|||.|+|++||+|+.+++++++||.|+.++++|++.|+++||+++|||||+||||||++|-
T Consensus 95 ADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~r~g 174 (251)
T PLN02879 95 ADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSG 174 (251)
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ------CCCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCC
Q 020115 254 ------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGAR 327 (331)
Q Consensus 254 ------~tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~lgv~ 327 (331)
.+|.+|||+||++|+.+.++ | .++|+||++|+.|++|+++|++||.||++|+++|+.||+||+++|+.
T Consensus 175 ~~g~~d~tp~~FDN~Yy~~ll~~~~~---g---ll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 175 FEGAWTPNPLIFDNSYFKEILSGEKE---G---LLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred CCCCCCCCccceeHHHHHHHHcCCcC---C---CccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 37999999999999987432 4 45689999999999999999999999999999999999999999999
Q ss_pred CCC
Q 020115 328 WRS 330 (331)
Q Consensus 328 ~~~ 330 (331)
+++
T Consensus 249 ~~~ 251 (251)
T PLN02879 249 DKE 251 (251)
T ss_pred CCC
Confidence 875
No 2
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=5.1e-60 Score=450.56 Aligned_cols=222 Identities=38% Similarity=0.622 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHhc-CChHHHHHHHhhccccccccCCCCCCCCcccc--cccCcCcCCChhHHHHHHHHHHhhcccCc-
Q 020115 103 DYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNAIRP- 178 (331)
Q Consensus 103 ~~~iV~~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e~~c~- 178 (331)
..+.++++|++++.+ +++|.+|||+||||+||+..+++|||||||++ |+++++|.||++++++|++||+++..++.
T Consensus 13 ~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~iK~~~~~VScA 92 (289)
T PLN02608 13 EIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPVKAKHPKITYA 92 (289)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHHHHHcCCcCHH
Confidence 346677888887775 89999999999999999999999999999997 78899999998899999999999977655
Q ss_pred hhhhhcccceeeccCCCCcCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCChhhHHHHhcCcccCCCC-----C
Q 020115 179 DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKG-----F 253 (331)
Q Consensus 179 DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsGaHTiG~~~-----~ 253 (331)
|||+||||+||+.+|||.|+|++||+|+.+++++++||+|..+++++++.|+++||+++|||+|+||||||.+| +
T Consensus 93 DilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~r~g~ 172 (289)
T PLN02608 93 DLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGF 172 (289)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccccccccccCCCC
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999976 1
Q ss_pred -----CCCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCC
Q 020115 254 -----GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGARW 328 (331)
Q Consensus 254 -----~tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~lgv~~ 328 (331)
.+|.+|||+||++|+.++|+ | .++|+||++|+.|++|+++|+.||.||++|+++|++||+||+++||++
T Consensus 173 ~g~~~~Tp~~FDN~Yy~~ll~~~~~---g---ll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvlt 246 (289)
T PLN02608 173 DGPWTKEPLKFDNSYFVELLKGESE---G---LLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTP 246 (289)
T ss_pred CCCCCCCCCccChHHHHHHHcCCcC---C---ccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999987542 4 356899999999999999999999999999999999999999999987
Q ss_pred CC
Q 020115 329 RS 330 (331)
Q Consensus 329 ~~ 330 (331)
.+
T Consensus 247 g~ 248 (289)
T PLN02608 247 PS 248 (289)
T ss_pred CC
Confidence 53
No 3
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-60 Score=455.82 Aligned_cols=219 Identities=38% Similarity=0.584 Sum_probs=203.6
Q ss_pred cccccCCChhHHHHHHHHHHHHHhc--CChHHHHHHHhhccccccccCCCCCCCCcccc--------cccCcCcCCChhH
Q 020115 93 LGAKAESGMSDYLLMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--------ELERPENAGLNKP 162 (331)
Q Consensus 93 ~~~~~~~~~~~~~iV~~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--------E~~~p~N~gL~~~ 162 (331)
.+||.++||++|+||+++|++.+.+ +++|++|||+||||+ ++||||||++ |+++++|.++ ++
T Consensus 4 ~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g 75 (298)
T cd00693 4 VGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RG 75 (298)
T ss_pred cccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-ch
Confidence 5688999999999999999999986 899999999999997 6899999975 7889999998 69
Q ss_pred HHHHHHHHHhhcccCc------hhhhhcccceeeccCCCCcCCCCCCCCCCCCCC--CCCCCCCCccHHHHHHHHHHcCC
Q 020115 163 LKILEKAKGDVNAIRP------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDP--EGKLPQETLDASGLKQCFQRKGF 234 (331)
Q Consensus 163 ~~~I~~iK~~~e~~c~------DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~~--~~~LP~p~~~~~~L~~~F~~~Gl 234 (331)
+++|++||+++|+.|| |||+||||+||+++|||.|+|++||+|+.++.+ .+.||.|..+++++++.|+++||
T Consensus 76 ~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~ 155 (298)
T cd00693 76 FDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGL 155 (298)
T ss_pred hHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCC
Confidence 9999999999999887 999999999999999999999999999986543 36899999999999999999999
Q ss_pred ChhhHHHHhcCcccCCCC----------C------------------------------------CCCccccchHHHHHh
Q 020115 235 SAQELVALSGAHTLGTKG----------F------------------------------------GNPIVFDNSYYKILL 268 (331)
Q Consensus 235 s~~EmVaLsGaHTiG~~~----------~------------------------------------~tP~~FDN~Yyk~Ll 268 (331)
+++|||||+||||||++| | .+|.+|||+||++|+
T Consensus 156 ~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 156 TVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred CHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHH
Confidence 999999999999999964 1 468899999999999
Q ss_pred hcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCC
Q 020115 269 EKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGARWR 329 (331)
Q Consensus 269 ~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~lgv~~~ 329 (331)
.++ | +|+||++|+.|++|+++|++||.||+.|+++|++||+||+++||++-
T Consensus 236 ~~~-----g-----lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg 286 (298)
T cd00693 236 AGR-----G-----LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTG 286 (298)
T ss_pred hcc-----c-----CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccC
Confidence 876 5 59999999999999999999999999999999999999999999864
No 4
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.4e-60 Score=460.23 Aligned_cols=219 Identities=29% Similarity=0.404 Sum_probs=202.0
Q ss_pred cccccCCChhHHHHHHHHHHHHHhc--CChHHHHHHHhhccccccccCCCCCCCCcccc-----cccCcCcCCChhHHHH
Q 020115 93 LGAKAESGMSDYLLMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY-----ELERPENAGLNKPLKI 165 (331)
Q Consensus 93 ~~~~~~~~~~~~~iV~~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~-----E~~~p~N~gL~~~~~~ 165 (331)
.+||.++||.+|+||+++|++.+.+ +++|++|||+||||+ ++||||||++ |+++++|.+| +||++
T Consensus 27 ~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~ 98 (324)
T PLN03030 27 VGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDV 98 (324)
T ss_pred cchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHH
Confidence 5689999999999999999999986 899999999999997 7999999875 8889999988 69999
Q ss_pred HHHHHHhhcccCc------hhhhhcccceeeccCCCCcCCCCCCCCCCCC--CCCCCCCCCCccHHHHHHHHHHcCCChh
Q 020115 166 LEKAKGDVNAIRP------DMIALGGAVAVSVCGGPNIPVPMGRLDSMEP--DPEGKLPQETLDASGLKQCFQRKGFSAQ 237 (331)
Q Consensus 166 I~~iK~~~e~~c~------DiialAa~~AV~~~GGP~i~v~~GR~D~~~s--~~~~~LP~p~~~~~~L~~~F~~~Gls~~ 237 (331)
|+.||+++|+.|| |||++||||||+++|||.|+|++||+|+.++ .+..+||.|+.++++|++.|+++||+.+
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHH
Confidence 9999999999998 9999999999999999999999999999876 3345899999999999999999999999
Q ss_pred hHHHHhcCcccCCCC-----------------------------------------------CCCCccccchHHHHHhhc
Q 020115 238 ELVALSGAHTLGTKG-----------------------------------------------FGNPIVFDNSYYKILLEK 270 (331)
Q Consensus 238 EmVaLsGaHTiG~~~-----------------------------------------------~~tP~~FDN~Yyk~Ll~~ 270 (331)
|||+|+||||||++| ..+|.+|||+||++|+.+
T Consensus 179 DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhc
Confidence 999999999999852 025679999999999998
Q ss_pred CccccCCCCCccccccccccccChhHHHHHHHHhhCH----HHHHHHHHHHHHHHHhCCCCCC
Q 020115 271 PWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQ----NMFFEDFKNAYVKLVNSGARWR 329 (331)
Q Consensus 271 ~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq----~~F~~dFa~Am~KM~~lgv~~~ 329 (331)
+ | +|+|||+|+.|++|+++|++||.|+ +.|+++|++||+||+++||++-
T Consensus 259 r-----G-----lL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG 311 (324)
T PLN03030 259 R-----G-----ILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTG 311 (324)
T ss_pred C-----C-----CcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCC
Confidence 7 6 5999999999999999999999875 5999999999999999999874
No 5
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.2e-60 Score=442.59 Aligned_cols=227 Identities=36% Similarity=0.607 Sum_probs=209.1
Q ss_pred ccCCChhHHHHHHHHHHHHHhc-CChHHHHHHHhhccccccccCCCCCCCCcccc--cccCcCcCCChhHHHHHHHHHHh
Q 020115 96 KAESGMSDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGD 172 (331)
Q Consensus 96 ~~~~~~~~~~iV~~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~ 172 (331)
..+.|++++..++++|++++.. +++|.+|||+||||+||+...+.|||||||++ |+++++|.||.+++++|++||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ik~~ 87 (250)
T PLN02364 8 VSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQ 87 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHHHHHH
Confidence 3477888999999999999975 89999999999999999999888999999987 78999999998999999999999
Q ss_pred hcccCc-hhhhhcccceeeccCCCCcCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH-cCCChhhHHHHhcCcccCC
Q 020115 173 VNAIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQR-KGFSAQELVALSGAHTLGT 250 (331)
Q Consensus 173 ~e~~c~-DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~L~~~F~~-~Gls~~EmVaLsGaHTiG~ 250 (331)
+..++. |||+||||+||+++|||.|+|++||+|+.++.+++.||.|..++++|++.|++ +||+++|||||+||||||.
T Consensus 88 ~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~ 167 (250)
T PLN02364 88 FPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGR 167 (250)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeecc
Confidence 976655 99999999999999999999999999999999999999999999999999997 6999999999999999998
Q ss_pred CCC----------CCCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 020115 251 KGF----------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVK 320 (331)
Q Consensus 251 ~~~----------~tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~K 320 (331)
+|. .+|.+|||+||++|+.+.|. | .+.|+||++|+.|++|+.+|+.||.||++|+++|++||+|
T Consensus 168 ~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~---g---ll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~K 241 (250)
T PLN02364 168 CHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKE---G---LLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMK 241 (250)
T ss_pred ccCCCCCCCCCCCCCCCccchHHHHHHhcCCcC---C---CccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 752 47899999999999987542 4 3457899999999999999999999999999999999999
Q ss_pred HHhCCCCC
Q 020115 321 LVNSGARW 328 (331)
Q Consensus 321 M~~lgv~~ 328 (331)
|+++|+.+
T Consensus 242 m~~lg~~~ 249 (250)
T PLN02364 242 LSELGFAD 249 (250)
T ss_pred HHccCCCC
Confidence 99999865
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=9e-60 Score=442.79 Aligned_cols=228 Identities=40% Similarity=0.723 Sum_probs=209.3
Q ss_pred CChhHHHHHHHHHHHHHhc-CChHHHHHHHhhccccccccCCCCCCCCcccc--cccCcCcCCChhHHHHHHHHHHhhcc
Q 020115 99 SGMSDYLLMKEEVTKVVSK-GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVNA 175 (331)
Q Consensus 99 ~~~~~~~iV~~~V~~~~~~-~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e~ 175 (331)
-...++.+|+++|++++.. ++++++|||+||||++++.....|||||++++ |+++++|.+|.+++++|++||+++..
T Consensus 8 ~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~ 87 (253)
T cd00691 8 YAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKYPD 87 (253)
T ss_pred ccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHcCC
Confidence 3467889999999999986 78999999999999999888888999999876 89999999998899999999999965
Q ss_pred cC-chhhhhcccceeeccCCCCcCCCCCCCCCCCCC---CCCCCCCCCccHHHHHHHHHHcCCChhhHHHHhcCcccCCC
Q 020115 176 IR-PDMIALGGAVAVSVCGGPNIPVPMGRLDSMEPD---PEGKLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTK 251 (331)
Q Consensus 176 ~c-~DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~---~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsGaHTiG~~ 251 (331)
++ .|||+||||+||+.+|||.|+|++||+|+.++. ++++||.|..++++|++.|+++||+++|||+|+||||||.+
T Consensus 88 VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a 167 (253)
T cd00691 88 ISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRC 167 (253)
T ss_pred CCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecc
Confidence 54 499999999999999999999999999999876 77889999999999999999999999999999999999997
Q ss_pred CC----------CCCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 020115 252 GF----------GNPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKL 321 (331)
Q Consensus 252 ~~----------~tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM 321 (331)
|- .+|.+|||+||++|+.++|.+ +.+..++|+||++|+.|++|+++|+.||.|+++|+++|++||+||
T Consensus 168 ~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~--~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km 245 (253)
T cd00691 168 HKERSGYDGPWTKNPLKFDNSYFKELLEEDWKL--PTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKL 245 (253)
T ss_pred cccCCCCCCCCCCCCCcccHHHHHHHhcCCCcc--CcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 51 489999999999999988754 233556899999999999999999999999999999999999999
Q ss_pred HhCCCCC
Q 020115 322 VNSGARW 328 (331)
Q Consensus 322 ~~lgv~~ 328 (331)
+++||+|
T Consensus 246 ~~l~v~~ 252 (253)
T cd00691 246 SELGVPF 252 (253)
T ss_pred HhcCCCC
Confidence 9999997
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9.3e-56 Score=427.94 Aligned_cols=226 Identities=31% Similarity=0.433 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhc-----CChHHHHHHHhhcccccc-----ccCCCCCCCCcccc----cccCcCcCCChhHHHHHHH
Q 020115 103 DYLLMKEEVTKVVSK-----GKAASVLRLAFHDAGTFE-----MDDNSGGMNGSIVY----ELERPENAGLNKPLKILEK 168 (331)
Q Consensus 103 ~~~iV~~~V~~~~~~-----~~aa~lLRL~FHDc~s~~-----~~~~~gG~dGSi~~----E~~~p~N~gL~~~~~~I~~ 168 (331)
.|..|+++|++.+.. ..|+.+|||+||||++|+ ...+.|||||||+. |+++++|.||+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~---~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLD---EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHH---HHHHH
Confidence 467899999999863 468899999999999998 35567999999874 88999999996 56666
Q ss_pred HHHhhcccC--c-hhhhhcccceeecc-CCCCcCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCChhhHHHHhc
Q 020115 169 AKGDVNAIR--P-DMIALGGAVAVSVC-GGPNIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSG 244 (331)
Q Consensus 169 iK~~~e~~c--~-DiialAa~~AV~~~-GGP~i~v~~GR~D~~~s~~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsG 244 (331)
+|..+|+.| . |||+|||++||+.| |||.|+|++||+|+.++.++++||.|+.++++|++.|+++||+++|||+|+|
T Consensus 93 lk~~~e~~cVScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsG 172 (328)
T cd00692 93 LRPFHQKHNVSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLA 172 (328)
T ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 776666643 3 99999999999966 9999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCC-----------CCCccccchHHHHHh-hcCccccC---------CCCCccccccccccccChhHHHHHHHH
Q 020115 245 AHTLGTKGF-----------GNPIVFDNSYYKILL-EKPWQSSA---------GMSSMIGLPSDRALVEDDECLRWIKMY 303 (331)
Q Consensus 245 aHTiG~~~~-----------~tP~~FDN~Yyk~Ll-~~~w~~~~---------Gl~~~~~L~SD~~L~~D~~t~~~V~~y 303 (331)
|||||++|. .+|.+|||+||++++ .+.|.+.. .+++.++|+||++|+.|++|+.+|++|
T Consensus 173 AHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~f 252 (328)
T cd00692 173 AHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSF 252 (328)
T ss_pred cccccccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHH
Confidence 999999862 368899999999987 44443221 134678899999999999999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHhCCCCCCCC
Q 020115 304 ADNQNMFFEDFKNAYVKLVNSGARWRSL 331 (331)
Q Consensus 304 A~dq~~F~~dFa~Am~KM~~lgv~~~~~ 331 (331)
|+||++|+++|+.||+||+++||...+|
T Consensus 253 a~dq~~f~~~Fa~Am~KLs~lgv~~~~l 280 (328)
T cd00692 253 VNNQAKMNAAFAAAMLKLSLLGQDNISL 280 (328)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcchh
Confidence 9999999999999999999999987654
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.2e-53 Score=416.56 Aligned_cols=263 Identities=28% Similarity=0.422 Sum_probs=233.0
Q ss_pred cccccchhhhhcccccccchh----hcccccccccCCChhHHHHHHHHHHHHHhc----------CChHHHHHHHhhccc
Q 020115 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (331)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~~~~~~~~~~~~~~iV~~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (331)
++++|.+|+..+-|-.|.++. .++.+|+|..+....+|+.|+++|++++.. +.+|-+|||+|||++
T Consensus 3 ~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~Ag 82 (409)
T cd00649 3 GTSNQDWWPNRLNLKILHQHSPKSNPMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAG 82 (409)
T ss_pred CCCcCCcCCcccCchhhccCCCCCCCCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccc
Confidence 346799999999999998763 556689999999999999999999999985 367899999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcCcCCChhHHHHHHHHHHhhc-ccCc-hhhhhcccceeeccCCCCcCCCCCCCCCC
Q 020115 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVN-AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSM 207 (331)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e-~~c~-DiialAa~~AV~~~GGP~i~v~~GR~D~~ 207 (331)
||+..+++||+| |+|++ |++++.|.||.+++.+|++||+++. .++. |+|+||+.+|||.+|||.|+|.+||.|..
T Consensus 83 Ty~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~ 162 (409)
T cd00649 83 TYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVW 162 (409)
T ss_pred cccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccC
Confidence 999999999997 78998 6889999999999999999999997 6887 99999999999999999999999999997
Q ss_pred CCC--------------------------------------CCC--CCCCCCccHHHHHHHHHHcCCChhhHHHH-hcCc
Q 020115 208 EPD--------------------------------------PEG--KLPQETLDASGLKQCFQRKGFSAQELVAL-SGAH 246 (331)
Q Consensus 208 ~s~--------------------------------------~~~--~LP~p~~~~~~L~~~F~~~Gls~~EmVaL-sGaH 246 (331)
.+. |++ .||+|..++.+|++.|.+|||+++||||| +|||
T Consensus 163 ~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAH 242 (409)
T cd00649 163 EPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGH 242 (409)
T ss_pred CCccccccCcchhcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCc
Confidence 532 334 68999999999999999999999999999 5999
Q ss_pred ccCCCCC---------------------------------------------CCCccccchHHHHHhhcCcccc---CC-
Q 020115 247 TLGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSS---AG- 277 (331)
Q Consensus 247 TiG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~---~G- 277 (331)
|||++|- .+|.+|||+||++|+..+|+.. .|
T Consensus 243 TiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~ 322 (409)
T cd00649 243 TFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGA 322 (409)
T ss_pred ceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCc
Confidence 9998541 3688999999999999888643 11
Q ss_pred ----------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHH--HhCCCCCC
Q 020115 278 ----------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKL--VNSGARWR 329 (331)
Q Consensus 278 ----------------------l~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM--~~lgv~~~ 329 (331)
....+||+||++|+.|++++++|++||.|+++||++|++||.|| .++|++.+
T Consensus 323 ~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~ 398 (409)
T cd00649 323 WQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSR 398 (409)
T ss_pred ccccccCccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhh
Confidence 01467999999999999999999999999999999999999999 57787654
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.4e-51 Score=384.24 Aligned_cols=218 Identities=49% Similarity=0.815 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhc--CChHHHHHHHhhccccccccC-CCCCCCCcccc--cccCcCcCCChhHHHHHHHHHHhhc---ccC
Q 020115 106 LMKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDD-NSGGMNGSIVY--ELERPENAGLNKPLKILEKAKGDVN---AIR 177 (331)
Q Consensus 106 iV~~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~-~~gG~dGSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e---~~c 177 (331)
.|++.|++.+.+ .+++++|||+||||++++..+ +.|||||||++ |+++|+|.+|.+++++|++||.+++ .++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 467777777765 789999999999999998876 78999999998 6899999999899999999999998 344
Q ss_pred c-hhhhhcccceeecc--CCCCcCCCCCCCCCC-----CCCCCCCCCCCCccHHHHHHHHHHcCCChhhHHHHh-cCccc
Q 020115 178 P-DMIALGGAVAVSVC--GGPNIPVPMGRLDSM-----EPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALS-GAHTL 248 (331)
Q Consensus 178 ~-DiialAa~~AV~~~--GGP~i~v~~GR~D~~-----~s~~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLs-GaHTi 248 (331)
. |||++|+++||+.+ |||.|+|++||+|+. .+.|.+.+|.+..+++++++.|.++||+++|||||+ |+||+
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti 161 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTL 161 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeec
Confidence 4 99999999999999 999999999999999 577888899999999999999999999999999999 99999
Q ss_pred -CCCCC------------CCCccccchHHHHHhhcCccccC------CCCCccccccccccccChhHHHHHHHHhhCHHH
Q 020115 249 -GTKGF------------GNPIVFDNSYYKILLEKPWQSSA------GMSSMIGLPSDRALVEDDECLRWIKMYADNQNM 309 (331)
Q Consensus 249 -G~~~~------------~tP~~FDN~Yyk~Ll~~~w~~~~------Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~ 309 (331)
|.+|- .+|.+|||+||++|+.+.|.+.. +.....+|+||++|+.|++|+.+|++||.|+++
T Consensus 162 ~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~ 241 (255)
T cd00314 162 GGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK 241 (255)
T ss_pred cCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH
Confidence 98752 37999999999999999886432 223345899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020115 310 FFEDFKNAYVKLVN 323 (331)
Q Consensus 310 F~~dFa~Am~KM~~ 323 (331)
|+++|++||.||++
T Consensus 242 f~~~Fa~a~~Km~~ 255 (255)
T cd00314 242 FFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999974
No 10
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.7e-52 Score=388.49 Aligned_cols=184 Identities=46% Similarity=0.757 Sum_probs=166.6
Q ss_pred HHHHHHHHHhc--CChHHHHHHHhhccccccccCCCCCCCCcccc---cccCcCcCCChhHHHHHHHHHHhhcccCc---
Q 020115 107 MKEEVTKVVSK--GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVY---ELERPENAGLNKPLKILEKAKGDVNAIRP--- 178 (331)
Q Consensus 107 V~~~V~~~~~~--~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~---E~~~p~N~gL~~~~~~I~~iK~~~e~~c~--- 178 (331)
||++|++++++ +++|++|||+||||++| |||||||+. |+++++|.||++++++|++||+++++.||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 78999999986 89999999999999855 999999977 99999999998899999999999998776
Q ss_pred ---hhhhhcccceeeccCCCCcCCCCCCCCCCCCCCCC--CCCCCCccHHHHHHHHHHcCCChhhHHHHhcCcccCCCCC
Q 020115 179 ---DMIALGGAVAVSVCGGPNIPVPMGRLDSMEPDPEG--KLPQETLDASGLKQCFQRKGFSAQELVALSGAHTLGTKGF 253 (331)
Q Consensus 179 ---DiialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~~--~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsGaHTiG~~~~ 253 (331)
|||+|||++||+.+|||.|+|++||+|+.++.+.+ +||.|..++++|++.|+++|||++|||||+||||||.+|-
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999987654 4999999999999999999999999999999999999872
Q ss_pred C---------------------------------CCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHH
Q 020115 254 G---------------------------------NPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWI 300 (331)
Q Consensus 254 ~---------------------------------tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V 300 (331)
. +|.+|||+||++|++++ | +|+||++|+.|++|+++|
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~dtp~~fDN~Yy~~ll~~~-----g-----ll~SD~~L~~d~~t~~~V 224 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLDTPTVFDNSYYKNLLNGR-----G-----LLPSDQALLNDPETRPIV 224 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESSSTTS-SSHHHHHHHHTE-----E-----EEHHHHHHHHSTTHHHHH
T ss_pred ccccccccccccccccccceeccCCCccccccccCCCcchhHHHHHHhcCC-----C-----cCHHHHHHhcCHHHHHHH
Confidence 2 69999999999999976 5 699999999999999999
Q ss_pred HHHhhC
Q 020115 301 KMYADN 306 (331)
Q Consensus 301 ~~yA~d 306 (331)
++||+|
T Consensus 225 ~~yA~d 230 (230)
T PF00141_consen 225 ERYAQD 230 (230)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 999986
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.1e-49 Score=408.36 Aligned_cols=261 Identities=28% Similarity=0.419 Sum_probs=228.5
Q ss_pred cccccchhhhhcccccccchh----hcccccccccCCChhHHHHHHHHHHHHHhc----------CChHHHHHHHhhccc
Q 020115 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (331)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~~~~~~~~~~~~~~iV~~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (331)
+.++|.+|+.-+-|-.|.++. .++.+|+|..+....+|..|+++|++++.. ..+|-+|||+||+++
T Consensus 13 ~~~~~~wwp~~l~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAg 92 (716)
T TIGR00198 13 TGQTGDWWPNALNLDILHQHDRKTNPMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAG 92 (716)
T ss_pred CCCccCcCCcccCchhhccCCCCCCCCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccc
Confidence 456799999999999999763 456789999999999999999999999985 367889999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcCcCCChhHHHHHHHHHHhhc-ccCc-hhhhhcccceeeccCCCCcCCCCCCCCCC
Q 020115 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVN-AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSM 207 (331)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e-~~c~-DiialAa~~AV~~~GGP~i~v~~GR~D~~ 207 (331)
||+..+++||++ |+|++ |++||.|.+|.+++.+|++||+++. .++. |||+|||++||+.+|||.|+|.+||+|+.
T Consensus 93 TYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~ 172 (716)
T TIGR00198 93 TYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIW 172 (716)
T ss_pred cccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCC
Confidence 999999999995 88998 5789999999999999999999997 4555 99999999999999999999999999995
Q ss_pred CCC-------------------------------------CCC--CCCCCCccHHHHHHHHHHcCCChhhHHHHh-cCcc
Q 020115 208 EPD-------------------------------------PEG--KLPQETLDASGLKQCFQRKGFSAQELVALS-GAHT 247 (331)
Q Consensus 208 ~s~-------------------------------------~~~--~LP~p~~~~~~L~~~F~~~Gls~~EmVaLs-GaHT 247 (331)
.++ |++ .+|.|..++++|++.|++||||++|||||+ ||||
T Consensus 173 ~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHT 252 (716)
T TIGR00198 173 EPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHT 252 (716)
T ss_pred CcccccccccccchhhccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCcee
Confidence 321 122 689999999999999999999999999995 9999
Q ss_pred cCCCCC---------------------------------------------CCCccccchHHHHHhhcCccccC---C--
Q 020115 248 LGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSSA---G-- 277 (331)
Q Consensus 248 iG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~~---G-- 277 (331)
||.+|- .+|.+|||+||++|+++.|+... |
T Consensus 253 iGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~ 332 (716)
T TIGR00198 253 VGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAW 332 (716)
T ss_pred ccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCc
Confidence 998651 26889999999999998775321 1
Q ss_pred -------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCC
Q 020115 278 -------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN--SGAR 327 (331)
Q Consensus 278 -------------------l~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~--lgv~ 327 (331)
....+||+||++|..|++++++|+.||.|+++|+++|++||.||++ +|.+
T Consensus 333 q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~ 403 (716)
T TIGR00198 333 QWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPK 403 (716)
T ss_pred eeeecccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCch
Confidence 1136789999999999999999999999999999999999999995 5644
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.5e-48 Score=401.10 Aligned_cols=261 Identities=27% Similarity=0.409 Sum_probs=229.9
Q ss_pred cccccchhhhhcccccccch----hhcccccccccCCChhHHHHHHHHHHHHHhc----------CChHHHHHHHhhccc
Q 020115 67 SNRRRRGLLLTATLPFLLPL----HEFVQDLGAKAESGMSDYLLMKEEVTKVVSK----------GKAASVLRLAFHDAG 132 (331)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~----~~~~~~~~~~~~~~~~~~~iV~~~V~~~~~~----------~~aa~lLRL~FHDc~ 132 (331)
++.+|.+|+.-+-|-.|.++ ..++.+|+|..+....+|..|+++|++++.. ..+|-+|||+||+++
T Consensus 15 ~~~~~~wwp~~l~l~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~Ag 94 (726)
T PRK15061 15 GTSNRDWWPNQLNLDILHQHSSKSNPMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAG 94 (726)
T ss_pred CCCcccCCCcccCchhhccCCCCCCCCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccc
Confidence 56789999999999999987 3556789999999999999999999999985 357899999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcCcCCChhHHHHHHHHHHhhc-ccCc-hhhhhcccceeeccCCCCcCCCCCCCCCC
Q 020115 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVN-AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSM 207 (331)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e-~~c~-DiialAa~~AV~~~GGP~i~v~~GR~D~~ 207 (331)
||+..+++||++ |+|++ |.++|.|.||.+++.+|++||+++. +++. |+|+||+.+|||.+|||.|+|.+||.|..
T Consensus 95 TYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~ 174 (726)
T PRK15061 95 TYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVW 174 (726)
T ss_pred cccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCc
Confidence 999999999997 78998 5789999999999999999999996 6888 99999999999999999999999999986
Q ss_pred CCCC---------------------------------------CC--CCCCCCccHHHHHHHHHHcCCChhhHHHHh-cC
Q 020115 208 EPDP---------------------------------------EG--KLPQETLDASGLKQCFQRKGFSAQELVALS-GA 245 (331)
Q Consensus 208 ~s~~---------------------------------------~~--~LP~p~~~~~~L~~~F~~~Gls~~EmVaLs-Ga 245 (331)
.+.. ++ -+|+|..++.+|++.|.+|||+++|||||+ ||
T Consensus 175 ~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGg 254 (726)
T PRK15061 175 EPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGG 254 (726)
T ss_pred CCccccccCccccccccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCC
Confidence 5321 11 268899999999999999999999999995 99
Q ss_pred cccCCCCC---------------------------------------------CCCccccchHHHHHhhcCcccc---CC
Q 020115 246 HTLGTKGF---------------------------------------------GNPIVFDNSYYKILLEKPWQSS---AG 277 (331)
Q Consensus 246 HTiG~~~~---------------------------------------------~tP~~FDN~Yyk~Ll~~~w~~~---~G 277 (331)
||+|++|- .+|.+|||+||++|+.++|... .|
T Consensus 255 HT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G 334 (726)
T PRK15061 255 HTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAG 334 (726)
T ss_pred ceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCc
Confidence 99998641 2688999999999999988532 11
Q ss_pred -----------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCC
Q 020115 278 -----------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN--SGAR 327 (331)
Q Consensus 278 -----------------------l~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~--lgv~ 327 (331)
-...+||.||++|..||+++++|++||.|+++|+++|++||.||++ +|.+
T Consensus 335 ~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~ 409 (726)
T PRK15061 335 AWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPK 409 (726)
T ss_pred cccccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCch
Confidence 0136899999999999999999999999999999999999999966 5544
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=8.9e-44 Score=338.36 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=178.3
Q ss_pred ChHHHHHHHhhccccccccCCCCCCCCc-ccc--cccCcCcCC--ChhHHHHHHHHHHhhc-------ccCc-hhhhhcc
Q 020115 119 KAASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENAG--LNKPLKILEKAKGDVN-------AIRP-DMIALGG 185 (331)
Q Consensus 119 ~aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~g--L~~~~~~I~~iK~~~e-------~~c~-DiialAa 185 (331)
.++.+|||+||+++||+..+++||+||+ |++ |++|+.|.+ |.+++.+|++||+++. .++. |+|+||+
T Consensus 29 ~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG 108 (297)
T cd08200 29 TVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGG 108 (297)
T ss_pred cHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHh
Confidence 4678999999999999999999999999 888 789999999 9999999999999997 5677 9999999
Q ss_pred cceeeccCC-----CCcCCCCCCCCCCCCC--CC---CCCCCCC------------ccHHHHHHHHHHcCCChhhHHHHh
Q 020115 186 AVAVSVCGG-----PNIPVPMGRLDSMEPD--PE---GKLPQET------------LDASGLKQCFQRKGFSAQELVALS 243 (331)
Q Consensus 186 ~~AV~~~GG-----P~i~v~~GR~D~~~s~--~~---~~LP~p~------------~~~~~L~~~F~~~Gls~~EmVaLs 243 (331)
.+|||.+|| |.|+|.+||.|+..+. ++ ..+|.+. .+.+.|++.|.++|||++|||||+
T Consensus 109 ~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~ 188 (297)
T cd08200 109 CAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLV 188 (297)
T ss_pred HHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhhee
Confidence 999999999 9999999999998753 22 1334221 235789999999999999999999
Q ss_pred cCc-ccCCCCC--------CCCccccchHHHHHhh--cCccccC-------------CCCCccccccccccccChhHHHH
Q 020115 244 GAH-TLGTKGF--------GNPIVFDNSYYKILLE--KPWQSSA-------------GMSSMIGLPSDRALVEDDECLRW 299 (331)
Q Consensus 244 GaH-TiG~~~~--------~tP~~FDN~Yyk~Ll~--~~w~~~~-------------Gl~~~~~L~SD~~L~~D~~t~~~ 299 (331)
||| ++|..|. .+|.+|||.||++|++ ..|++.+ |...++++++|.+|.+|++.|++
T Consensus 189 Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ 268 (297)
T cd08200 189 GGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAV 268 (297)
T ss_pred cchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHH
Confidence 997 7888652 3799999999999997 4576542 22234568999999999999999
Q ss_pred HHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 020115 300 IKMYADN--QNMFFEDFKNAYVKLVNSG 325 (331)
Q Consensus 300 V~~yA~d--q~~F~~dFa~Am~KM~~lg 325 (331)
|+.||.| |++||+||++||.||+++.
T Consensus 269 ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 269 AEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 9999998 9999999999999999874
No 14
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.5e-43 Score=331.39 Aligned_cols=202 Identities=32% Similarity=0.535 Sum_probs=167.9
Q ss_pred CChHHHHHHHhhccccccccCCCCCCCCcccccccCcCcCCCh--hHHHHHHHHHHhhcccCchhhhhcccceeeccCCC
Q 020115 118 GKAASVLRLAFHDAGTFEMDDNSGGMNGSIVYELERPENAGLN--KPLKILEKAKGDVNAIRPDMIALGGAVAVSVCGGP 195 (331)
Q Consensus 118 ~~aa~lLRL~FHDc~s~~~~~~~gG~dGSi~~E~~~p~N~gL~--~~~~~I~~iK~~~e~~c~DiialAa~~AV~~~GGP 195 (331)
++++++|||+||||++|+..+++|||||||++|..++||.|+. ..+..++.|+.. .-.|.|||+|||++||+.||||
T Consensus 40 ~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~-~VScADiialAa~~AV~~~GGP 118 (264)
T cd08201 40 QAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSP-RSSMADLIAMGVVTSVASCGGP 118 (264)
T ss_pred cHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccC-ccCHHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999899999875 233444444321 1234499999999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCChhhHHHHhc-CcccCCCC---C-----------------C
Q 020115 196 NIPVPMGRLDSMEPDPEGKLPQETLDASGLKQCFQRKGFSAQELVALSG-AHTLGTKG---F-----------------G 254 (331)
Q Consensus 196 ~i~v~~GR~D~~~s~~~~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsG-aHTiG~~~---~-----------------~ 254 (331)
.|+|++||+|+.++.+.+ ||.|+.++++|++.|+++||+++|||+|+| |||||++| + .
T Consensus 119 ~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~~p~ds 197 (264)
T cd08201 119 VVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTVLQFFD 197 (264)
T ss_pred eecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCCCCCCC
Confidence 999999999999998887 999999999999999999999999999996 99999874 1 1
Q ss_pred CCccccchHHHHHhhcCccccCCCCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 020115 255 NPIVFDNSYYKILLEKPWQSSAGMSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVN 323 (331)
Q Consensus 255 tP~~FDN~Yyk~Ll~~~w~~~~Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~ 323 (331)
+|.+|||+||.+++++.|...=-++....+.||..++..+.-.. ++..| +++.|.+..+..|.||++
T Consensus 198 tp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t-~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 198 TTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVT-MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccHH-HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 47899999999999988752111122345789999987665533 46777 799999999999999975
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.8e-40 Score=345.26 Aligned_cols=234 Identities=27% Similarity=0.403 Sum_probs=199.8
Q ss_pred ccccccCCChhHHHHHHHHHHHHHhc----C-ChHHHHHHHhhccccccccCCCCCCCCc-ccc--cccCcCc--CCChh
Q 020115 92 DLGAKAESGMSDYLLMKEEVTKVVSK----G-KAASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPEN--AGLNK 161 (331)
Q Consensus 92 ~~~~~~~~~~~~~~iV~~~V~~~~~~----~-~aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N--~gL~~ 161 (331)
+|.|++..++..|.+|+++|+.+..+ + ..+.||||+||+++||+..+++||+||+ |++ |++++.| .+|.+
T Consensus 415 ~~~wqdp~p~~~~~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~ 494 (716)
T TIGR00198 415 DLIWQDPLPPVDYTLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAK 494 (716)
T ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHH
Confidence 57899999999999999999886543 4 3578999999999999999999999999 888 7899999 89999
Q ss_pred HHHHHHHHHHhhc--ccCc-hhhhhcccceeecc---CCC--CcCCCCCCCCCCCC--CCCCCCCC--------------
Q 020115 162 PLKILEKAKGDVN--AIRP-DMIALGGAVAVSVC---GGP--NIPVPMGRLDSMEP--DPEGKLPQ-------------- 217 (331)
Q Consensus 162 ~~~~I~~iK~~~e--~~c~-DiialAa~~AV~~~---GGP--~i~v~~GR~D~~~s--~~~~~LP~-------------- 217 (331)
++++|++||+++. .++. |+|+|||.+|||.+ ||| .|+|.+||.|+... ++++..|.
T Consensus 495 vl~~Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~ 574 (716)
T TIGR00198 495 VLAVLEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRD 574 (716)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhcccc
Confidence 9999999999998 7888 99999999999999 897 68999999999875 33333321
Q ss_pred -CCccHHHHHHHHHHcCCChhhHHHHhcC-cccCCCCC--------CCCccccchHHHHHhhc--CccccC---------
Q 020115 218 -ETLDASGLKQCFQRKGFSAQELVALSGA-HTLGTKGF--------GNPIVFDNSYYKILLEK--PWQSSA--------- 276 (331)
Q Consensus 218 -p~~~~~~L~~~F~~~Gls~~EmVaLsGa-HTiG~~~~--------~tP~~FDN~Yyk~Ll~~--~w~~~~--------- 276 (331)
.....+.|++.|+.+|||++|||||+|| |++|..|. .+|.+|||.||++|++. .|++..
T Consensus 575 ~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~ 654 (716)
T TIGR00198 575 YAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGG 654 (716)
T ss_pred ccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeee
Confidence 1123567999999999999999999999 59999763 37999999999999984 565431
Q ss_pred ----CCCCccccccccccccChhHHHHHHHHhhCH--HHHHHHHHHHHHHHHhCC
Q 020115 277 ----GMSSMIGLPSDRALVEDDECLRWIKMYADNQ--NMFFEDFKNAYVKLVNSG 325 (331)
Q Consensus 277 ----Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~dq--~~F~~dFa~Am~KM~~lg 325 (331)
|...++++++|.+|.+|++.|++|+.||.|+ ++|++||++||.|++++|
T Consensus 655 dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 655 DRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred cCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 2222334588999999999999999999987 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-38 Score=328.23 Aligned_cols=234 Identities=25% Similarity=0.379 Sum_probs=192.5
Q ss_pred ccccccCCChhHHHHHH-HHHH---HHH-hcCC-hHHHHHHHhhccccccccCCCCCCCCc-ccc--cccCcCcC--CCh
Q 020115 92 DLGAKAESGMSDYLLMK-EEVT---KVV-SKGK-AASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENA--GLN 160 (331)
Q Consensus 92 ~~~~~~~~~~~~~~iV~-~~V~---~~~-~~~~-aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~--gL~ 160 (331)
++.|++..++..+.+|. ++|. ..+ ..++ .+.|||++||+++||+..+++||+||+ |++ |++++.|. +|.
T Consensus 421 ~~~wqdp~p~~~~~~~~~~di~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~ 500 (726)
T PRK15061 421 DLIWQDPVPAVDHELIDDADIAALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLA 500 (726)
T ss_pred cccccCCCCCCCcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHH
Confidence 57788888888877654 3333 222 3355 678999999999999999999999999 998 68999999 999
Q ss_pred hHHHHHHHHHHhhc-------ccCc-hhhhhcccceeecc---CC--CCcCCCCCCCCCCCCC--CCC---CCCCCC---
Q 020115 161 KPLKILEKAKGDVN-------AIRP-DMIALGGAVAVSVC---GG--PNIPVPMGRLDSMEPD--PEG---KLPQET--- 219 (331)
Q Consensus 161 ~~~~~I~~iK~~~e-------~~c~-DiialAa~~AV~~~---GG--P~i~v~~GR~D~~~s~--~~~---~LP~p~--- 219 (331)
+++++|++||++++ .++. |+|+||+.+|||.+ || |.|+|.+||.|+.... ++. .+|...
T Consensus 501 ~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfr 580 (726)
T PRK15061 501 KVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFR 580 (726)
T ss_pred HHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCcccc
Confidence 99999999999993 4666 99999999999999 58 9999999999998752 222 445422
Q ss_pred ---------ccHHHHHHHHHHcCCChhhHHHHhcCc-ccCCCCC--------CCCccccchHHHHHhh--cCccccCCC-
Q 020115 220 ---------LDASGLKQCFQRKGFSAQELVALSGAH-TLGTKGF--------GNPIVFDNSYYKILLE--KPWQSSAGM- 278 (331)
Q Consensus 220 ---------~~~~~L~~~F~~~Gls~~EmVaLsGaH-TiG~~~~--------~tP~~FDN~Yyk~Ll~--~~w~~~~Gl- 278 (331)
...+.|++.|+++|||++|||||+||| ++|..+. .+|.+|||.||++|++ ..|++..+-
T Consensus 581 ny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~ 660 (726)
T PRK15061 581 NYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDE 660 (726)
T ss_pred ccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHHHHHhcCCceeeecCCCC
Confidence 234789999999999999999999997 7887652 3699999999999996 467654210
Q ss_pred ----------CC--ccccccccccccChhHHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 020115 279 ----------SS--MIGLPSDRALVEDDECLRWIKMYADN--QNMFFEDFKNAYVKLVNSG 325 (331)
Q Consensus 279 ----------~~--~~~L~SD~~L~~D~~t~~~V~~yA~d--q~~F~~dFa~Am~KM~~lg 325 (331)
.. +..+++|.+|.+|++.|++|+.||.| +++|++||++||.|++++|
T Consensus 661 ~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 661 EVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred CceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 11 22368899999999999999999998 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-35 Score=291.45 Aligned_cols=260 Identities=26% Similarity=0.400 Sum_probs=225.7
Q ss_pred cccccchhhhhcccccccchh----hcccccccccCCChhHHHHHHHHHHHHHhcC----------ChHHHHHHHhhccc
Q 020115 67 SNRRRRGLLLTATLPFLLPLH----EFVQDLGAKAESGMSDYLLMKEEVTKVVSKG----------KAASVLRLAFHDAG 132 (331)
Q Consensus 67 ~~~~r~~~~~~~~lp~l~~~~----~~~~~~~~~~~~~~~~~~iV~~~V~~~~~~~----------~aa~lLRL~FHDc~ 132 (331)
++.+|.+|+...-|-.|.++. .++.+|+|..+....++..|..+++.++... -.+-+|||+||.++
T Consensus 28 g~sn~dwwPN~L~l~iL~qh~~~snP~g~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAG 107 (730)
T COG0376 28 GSSNRDWWPNQLNLKILHQHSSKSNPMGEDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAG 107 (730)
T ss_pred CCCCCCcCcccccchHHhhhhcccCCCccchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccC
Confidence 566799999999998888763 4566789999999999999999999999852 36789999999999
Q ss_pred cccccCCCCCCC-Ccccc--cccCcCcCCChhHHHHHHHHHHhhc-ccCc-hhhhhcccceeeccCCCCcCCCCCCCCCC
Q 020115 133 TFEMDDNSGGMN-GSIVY--ELERPENAGLNKPLKILEKAKGDVN-AIRP-DMIALGGAVAVSVCGGPNIPVPMGRLDSM 207 (331)
Q Consensus 133 s~~~~~~~gG~d-GSi~~--E~~~p~N~gL~~~~~~I~~iK~~~e-~~c~-DiialAa~~AV~~~GGP~i~v~~GR~D~~ 207 (331)
||++.+++||.. |..+| +.+||.|.+|++++.+|++||+++. +++. |+|+||+.+|++.+|++.+.+..||.|..
T Consensus 108 TYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~w 187 (730)
T COG0376 108 TYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVW 187 (730)
T ss_pred ceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCC
Confidence 999999999986 66787 4679999999999999999999998 7888 99999999999999999999999999988
Q ss_pred CCCC--------------------------------------C--CCCCCCCccHHHHHHHHHHcCCChhhHHHHhc-Cc
Q 020115 208 EPDP--------------------------------------E--GKLPQETLDASGLKQCFQRKGFSAQELVALSG-AH 246 (331)
Q Consensus 208 ~s~~--------------------------------------~--~~LP~p~~~~~~L~~~F~~~Gls~~EmVaLsG-aH 246 (331)
.++. + +..|+|-.+..+++..|++|+++++|.|||++ ||
T Consensus 188 epd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGH 267 (730)
T COG0376 188 EPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGH 267 (730)
T ss_pred CCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhccc
Confidence 7643 1 13577778889999999999999999999985 89
Q ss_pred ccCCCC---------------------------C------------------CCCccccchHHHHHhhcCcccc---CC-
Q 020115 247 TLGTKG---------------------------F------------------GNPIVFDNSYYKILLEKPWQSS---AG- 277 (331)
Q Consensus 247 TiG~~~---------------------------~------------------~tP~~FDN~Yyk~Ll~~~w~~~---~G- 277 (331)
|+|.+| + .+|++|||+||.+|+...|..+ .|
T Consensus 268 tfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa 347 (730)
T COG0376 268 TFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGA 347 (730)
T ss_pred ccccccCCCchhhcCCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCcc
Confidence 999864 0 2689999999999999988532 11
Q ss_pred ---------------------CCCccccccccccccChhHHHHHHHHhhCHHHHHHHHHHHHHHHHhCCC
Q 020115 278 ---------------------MSSMIGLPSDRALVEDDECLRWIKMYADNQNMFFEDFKNAYVKLVNSGA 326 (331)
Q Consensus 278 ---------------------l~~~~~L~SD~~L~~D~~t~~~V~~yA~dq~~F~~dFa~Am~KM~~lgv 326 (331)
-...+||.+|.+|..||+.+++.++|.+|++.|.+.|++||.||.+.+.
T Consensus 348 ~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDM 417 (730)
T COG0376 348 WQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDM 417 (730)
T ss_pred ccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccC
Confidence 0257899999999999999999999999999999999999999988543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.4e-19 Score=178.54 Aligned_cols=236 Identities=28% Similarity=0.396 Sum_probs=185.0
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHhc----CC-hHHHHHHHhhccccccccCCCCCCCCc-ccc--cccCcCcC--CC
Q 020115 90 VQDLGAKAESGMSDYLLMKEEVTKVVSK----GK-AASVLRLAFHDAGTFEMDDNSGGMNGS-IVY--ELERPENA--GL 159 (331)
Q Consensus 90 ~~~~~~~~~~~~~~~~iV~~~V~~~~~~----~~-aa~lLRL~FHDc~s~~~~~~~gG~dGS-i~~--E~~~p~N~--gL 159 (331)
.+++.|++..+.-.|..|.++|..+-.+ ++ ...++-.+|..+.||+-.++.||.||. |++ .++|+.|. .|
T Consensus 430 ~e~liWQDpiP~vd~~l~d~di~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l 509 (730)
T COG0376 430 KEDLIWQDPLPAVDYELVDADIAALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAEL 509 (730)
T ss_pred hhhhhccCCCCccccccchHHHHHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHH
Confidence 3468899999999999888877554433 54 468999999999999999999999998 776 47888885 46
Q ss_pred hhHHHHHHHHHHhhcc-cCc-hhhhhcccceeecc---CCC--CcCCCCCCCCCCCC--CCCCC--C-------------
Q 020115 160 NKPLKILEKAKGDVNA-IRP-DMIALGGAVAVSVC---GGP--NIPVPMGRLDSMEP--DPEGK--L------------- 215 (331)
Q Consensus 160 ~~~~~~I~~iK~~~e~-~c~-DiialAa~~AV~~~---GGP--~i~v~~GR~D~~~s--~~~~~--L------------- 215 (331)
.+.+.+++.|.+.+.+ ++. |+|+|++..||+.+ +|- .+||.+||.|+.+. +.+.. |
T Consensus 510 ~kvl~~le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~ 589 (730)
T COG0376 510 AKVLAVLEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKK 589 (730)
T ss_pred HHHHHHHHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccC
Confidence 7889999999999975 666 99999999999987 564 57888999999864 21110 0
Q ss_pred CCCCccHHHHHHHHHHcCCChhhHHHHhcC-cccCCCCC--------CCCccccchHHHHHhh--cCccccC--------
Q 020115 216 PQETLDASGLKQCFQRKGFSAQELVALSGA-HTLGTKGF--------GNPIVFDNSYYKILLE--KPWQSSA-------- 276 (331)
Q Consensus 216 P~p~~~~~~L~~~F~~~Gls~~EmVaLsGa-HTiG~~~~--------~tP~~FDN~Yyk~Ll~--~~w~~~~-------- 276 (331)
.....+.+-|++.-+-.+||..||++|+|| +.+|..+- ..|..+.|.||.||++ ..|++.+
T Consensus 590 ~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~s~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg 669 (730)
T COG0376 590 DYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEG 669 (730)
T ss_pred CCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCCCCCccceeccCcccccchhhhhhhhccceeeeccccccceec
Confidence 111122345888888999999999999997 56666431 2588999999999997 5687652
Q ss_pred -----CCCCccccccccccccChhHHHHHHHHhh--CHHHHHHHHHHHHHHHHhCC
Q 020115 277 -----GMSSMIGLPSDRALVEDDECLRWIKMYAD--NQNMFFEDFKNAYVKLVNSG 325 (331)
Q Consensus 277 -----Gl~~~~~L~SD~~L~~D~~t~~~V~~yA~--dq~~F~~dFa~Am~KM~~lg 325 (331)
|-........|..+-+++..|.+++.||. ++++|.+||+.||.|.+|+.
T Consensus 670 ~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 670 RDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 11112346789999999999999999996 57899999999999999874
No 19
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.31 E-value=6.2 Score=36.68 Aligned_cols=13 Identities=54% Similarity=1.035 Sum_probs=10.9
Q ss_pred ccccccccccccC
Q 020115 7 SSLCGCSTAYYSS 19 (331)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (331)
..|+||+++||+.
T Consensus 2 ~~l~gCqsaYY~a 14 (201)
T PF11172_consen 2 LLLTGCQSAYYSA 14 (201)
T ss_pred chHHHhHHHHHHH
Confidence 3589999999975
No 20
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=34.83 E-value=14 Score=28.52 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=8.4
Q ss_pred CCChhhHHHH------hcCcccCCC--CCCCCccccchHHH
Q 020115 233 GFSAQELVAL------SGAHTLGTK--GFGNPIVFDNSYYK 265 (331)
Q Consensus 233 Gls~~EmVaL------sGaHTiG~~--~~~tP~~FDN~Yyk 265 (331)
|++.+|+=+= =.||..+.. -+++|..|||.|++
T Consensus 2 G~aaqeIs~PLk~sFlH~Ghg~~~~k~~Wg~~~~idn~yl~ 42 (66)
T PF09027_consen 2 GVAAQEISVPLKNSFLHTGHGMGNPKTCWGSPSEIDNNYLN 42 (66)
T ss_dssp -SSSTT---S-SS------------SS---SS----TTT--
T ss_pred CcchhhhcccccccccccCCcCCCCccccCChhhhhhhhhc
Confidence 6666665442 245655532 36899999999997
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=21.75 E-value=84 Score=31.41 Aligned_cols=57 Identities=19% Similarity=0.406 Sum_probs=37.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCC--CCCCC-C---CccHHHHHHHHHHcCC----------ChhhHHHHhcCccc
Q 020115 192 CGGPNIPVPMGRLDSMEPDPE--GKLPQ-E---TLDASGLKQCFQRKGF----------SAQELVALSGAHTL 248 (331)
Q Consensus 192 ~GGP~i~v~~GR~D~~~s~~~--~~LP~-p---~~~~~~L~~~F~~~Gl----------s~~EmVaLsGaHTi 248 (331)
+|-..|..++||-+.+.-.+. ...+. . -..+.++.+.|+..|+ +.+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 377789999999976532221 11221 1 1336778888888776 46788889999854
Done!