BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020116
         (331 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa
           subsp. japonica GN=Os05g0497500 PE=2 SV=1
          Length = 703

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 61  LHKYVGH-------NNIENSQRLESSNTAGDSK---RRKVCTDDMGGKCADGAEINSIEE 110
           LH + GH       +N  +SQR  SS+  GD K   R++ CT    G+C +G     + E
Sbjct: 142 LHLHGGHVSQSPPDSNALSSQRFGSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLHE 201

Query: 111 DSAGG 115
               G
Sbjct: 202 GEVSG 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,625,340
Number of Sequences: 539616
Number of extensions: 4621855
Number of successful extensions: 9067
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9065
Number of HSP's gapped (non-prelim): 20
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)