BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020118
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P67610|SYK_STAAN Lysine--tRNA ligase OS=Staphylococcus aureus (strain N315) GN=lysS
PE=1 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|P67609|SYK_STAAM Lysine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=lysS PE=1 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q5HIF7|SYK_STAAC Lysine--tRNA ligase OS=Staphylococcus aureus (strain COL) GN=lysS
PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q2YVW8|SYK_STAAB Lysine--tRNA ligase OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q2G0Q3|SYK_STAA8 Lysine--tRNA ligase OS=Staphylococcus aureus (strain NCTC 8325)
GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q2FJC3|SYK_STAA3 Lysine--tRNA ligase OS=Staphylococcus aureus (strain USA300)
GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|A7WYS8|SYK_STAA1 Lysine--tRNA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q8NXZ0|SYK_STAAW Lysine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=lysS
PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q6GBX1|SYK_STAAS Lysine--tRNA ligase OS=Staphylococcus aureus (strain MSSA476)
GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|Q53638|SYK_STAAU Lysine--tRNA ligase OS=Staphylococcus aureus GN=lysS PE=3 SV=1
Length = 495
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H + P ++K P R ++++ R+ + LN P+ G F
Sbjct: 373 ETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANRFTELNDPIDQKGRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L+++ A E+++ + + E G+ P
Sbjct: 433 AQ-LVEKAQGNDEAHEMDEDYIEALEYGMPP 462
>sp|A5UMB0|IF2A_METS3 Translation initiation factor 2 subunit alpha OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=eif2a PE=3
SV=1
Length = 265
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 85 AKTLIDEDLSTPWAD---EIEQKVLSSPEVGIGPYVEVAFY 122
AK+L DE +S WAD EI K ++ PEV I YV++ +
Sbjct: 148 AKSLTDEGISQEWADAITEIANKNITPPEVHISGYVDIETF 188
>sp|Q8CQV5|SYK_STAES Lysine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=lysS PE=3 SV=1
Length = 495
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H I + P ++K P R ++++ R+ + LN P+ F
Sbjct: 373 ETLIQPTFIYGHPIEISPLAKKNPNDERFTDRFELFIVGREHANAFTELNDPIDQRQRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L++++ A ++++ + + E G+ P
Sbjct: 433 AQ-LVEKEQGNDEAHDMDEDYIEALEYGMPP 462
>sp|Q5HRN7|SYK_STAEQ Lysine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=lysS PE=3 SV=1
Length = 495
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 35 EYIILPTFAYEHKIFVGPFSRKFP-------RAQIWVAPRQWS---WPLNLPLAFFGIFR 84
E +I PTF Y H I + P ++K P R ++++ R+ + LN P+ F
Sbjct: 373 ETLIQPTFIYGHPIEISPLAKKNPNDERFTDRFELFIVGREHANAFTELNDPIDQRQRFE 432
Query: 85 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGP 115
A+ L++++ A ++++ + + E G+ P
Sbjct: 433 AQ-LVEKEQGNDEAHDMDEDYIEALEYGMPP 462
>sp|Q2W4H6|NHAA_MAGSA Na(+)/H(+) antiporter NhaA OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=nhaA PE=3 SV=1
Length = 383
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 220 IVKTLVF----SKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDL 275
+V LVF +K PE VR W D F + A + AS FL A A +DDL
Sbjct: 103 VVPALVFLALNAKSPETVRGWAVPTATDIAFALGVLALLGPRVPASLKIFLTALAIIDDL 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,200,728
Number of Sequences: 539616
Number of extensions: 4972587
Number of successful extensions: 9548
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9547
Number of HSP's gapped (non-prelim): 16
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)