Query 020119
Match_columns 331
No_of_seqs 170 out of 1475
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02284 glutamine synthetase 100.0 2E-86 4.4E-91 642.3 35.2 329 1-329 1-354 (354)
2 PLN03036 glutamine synthetase; 100.0 4.6E-85 9.9E-90 642.7 35.4 331 1-331 61-416 (432)
3 COG0174 GlnA Glutamine synthet 100.0 3.3E-81 7.3E-86 616.3 29.9 302 14-329 11-360 (443)
4 TIGR00653 GlnA glutamine synth 100.0 2.5E-78 5.4E-83 603.5 27.8 299 16-329 10-374 (460)
5 PRK09469 glnA glutamine synthe 100.0 9.8E-78 2.1E-82 600.0 28.5 299 16-329 13-382 (469)
6 TIGR03105 gln_synth_III glutam 100.0 4.3E-76 9.3E-81 584.1 27.1 291 16-329 8-353 (435)
7 PF00120 Gln-synt_C: Glutamine 100.0 7.5E-63 1.6E-67 460.1 13.7 213 103-326 1-259 (259)
8 KOG0683 Glutamine synthetase [ 100.0 8.2E-48 1.8E-52 361.4 18.2 324 5-330 18-370 (380)
9 PF03951 Gln-synt_N: Glutamine 99.6 7.3E-15 1.6E-19 114.4 8.7 78 17-97 1-84 (84)
10 COG3968 Uncharacterized protei 99.5 1.1E-12 2.4E-17 127.3 14.4 189 122-327 214-500 (724)
11 TIGR02050 gshA_cyan_rel unchar 97.8 0.0003 6.4E-09 66.9 13.0 139 168-327 64-249 (287)
12 PRK13517 carboxylate-amine lig 97.7 0.00044 9.6E-09 68.1 11.5 81 168-263 75-167 (373)
13 PRK13515 carboxylate-amine lig 97.5 0.0017 3.7E-08 63.9 13.3 81 168-263 69-161 (371)
14 PRK13516 gamma-glutamyl:cystei 97.2 0.0036 7.8E-08 61.7 11.8 137 168-325 76-259 (373)
15 COG2170 Uncharacterized conser 97.0 0.0067 1.5E-07 58.5 10.9 136 168-327 67-252 (369)
16 PRK13518 carboxylate-amine lig 95.4 0.48 1E-05 46.6 14.5 81 168-263 77-169 (357)
17 PLN02611 glutamate--cysteine l 95.1 0.19 4.2E-06 51.1 10.8 37 220-263 210-246 (482)
18 KOG0683 Glutamine synthetase [ 94.0 0.012 2.6E-07 57.0 -0.8 70 250-329 270-342 (380)
19 TIGR01436 glu_cys_lig_pln glut 88.9 5.6 0.00012 40.3 11.8 20 120-139 18-37 (446)
20 TIGR02048 gshA_cyano glutamate 78.0 2.5 5.4E-05 41.9 3.9 137 169-325 59-244 (376)
21 PF04107 GCS2: Glutamate-cyste 68.5 4.5 9.7E-05 38.3 3.0 84 168-262 63-158 (288)
22 PF06877 RraB: Regulator of ri 47.6 75 0.0016 24.9 6.4 32 106-137 2-33 (104)
23 PF11679 DUF3275: Protein of u 32.5 37 0.00079 31.0 2.5 36 89-125 167-205 (214)
24 COG4456 VagC Virulence-associa 31.4 36 0.00077 25.8 1.9 28 283-311 7-34 (74)
25 cd04869 ACT_GcvR_2 ACT domains 31.4 78 0.0017 23.1 3.9 25 171-195 12-36 (81)
26 PF01921 tRNA-synt_1f: tRNA sy 27.9 3.2E+02 0.0068 27.1 8.3 96 87-190 23-130 (360)
27 TIGR03444 gshA_related glutama 26.4 78 0.0017 31.6 3.8 90 168-263 89-186 (390)
28 COG4519 Uncharacterized protei 25.4 2.3E+02 0.005 21.9 5.3 24 105-134 34-57 (95)
29 KOG4081 Dynein light chain [Ce 23.1 2.4E+02 0.0052 23.1 5.3 46 167-232 43-89 (115)
30 PF01451 LMWPc: Low molecular 21.8 1.6E+02 0.0035 24.0 4.4 48 168-215 11-70 (138)
31 PF04417 DUF501: Protein of un 21.7 1.5E+02 0.0032 25.2 4.1 41 78-122 3-48 (139)
32 COG1384 LysS Lysyl-tRNA synthe 21.5 5.2E+02 0.011 26.9 8.6 90 88-190 20-127 (521)
No 1
>PLN02284 glutamine synthetase
Probab=100.00 E-value=2e-86 Score=642.35 Aligned_cols=329 Identities=94% Similarity=1.535 Sum_probs=293.4
Q ss_pred ChhhHHhhcCCCCCCCCEEEEEEEEEeCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCCcEEEEEEEeeEe
Q 020119 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (331)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~~~~~~~~~~~dg~~~g~~~~~~~D~~l~PD~~~~~ 80 (331)
||.++...+++++++.+++.++|+|+|+.++++|||.+++.++++.+++.++|+||||++|+..++++|++|+||.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~ 80 (354)
T PLN02284 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (354)
T ss_pred CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence 45556667777779999999999999999999999999999998888888999999999998888999999999998999
Q ss_pred CCCCCCeEEEEEEeecCCCCcCCCChHHHHHHHHHHHhhcCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccc
Q 020119 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (331)
Q Consensus 81 Pw~~~~~a~vl~d~~~~~G~P~~~~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (331)
||.++++++|+||++++||+|++.|||.+|||+++++++.|+++++|+|+|||||+.+..++.|++..+.+.++++||+.
T Consensus 81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~ 160 (354)
T PLN02284 81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG 160 (354)
T ss_pred CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence 99765789999999999999999999999999999999999999999999999998643223344433355677888887
Q ss_pred CccchhhHHHHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccC
Q 020119 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQ 215 (331)
Q Consensus 161 ~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~ 215 (331)
.+.+..+.++++++|+++|+++||+|+++|||+|||| +||++||+.|||||||+.
T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~ 240 (354)
T PLN02284 161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240 (354)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence 7766556799999999999999999999999999999 899999999999999987
Q ss_pred CCCCCceeeeeecccccccCCChHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeEeccc
Q 020119 216 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 295 (331)
Q Consensus 216 ~d~~GsG~H~H~Sl~~~~~~~g~n~~~~~i~gl~L~h~~al~a~~~NSYkRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~ 295 (331)
++++|||||+|+|||++++++|.|+|+++++|++|+|+++|+||++||||||+|++|||.+++++||.+||+++||||..
T Consensus 241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~ 320 (354)
T PLN02284 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRD 320 (354)
T ss_pred CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence 55799999999999975434788999999999999999999999999999999999999656999999999999999976
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 020119 296 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329 (331)
Q Consensus 296 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~g 329 (331)
....+++|||+|+||++|||||++||+|++.+.+
T Consensus 321 ~~~~~~~riE~R~pd~~aNPYLa~aaila~~~~~ 354 (354)
T PLN02284 321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354 (354)
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence 5333457999999999999999999999998763
No 2
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=4.6e-85 Score=642.66 Aligned_cols=331 Identities=81% Similarity=1.395 Sum_probs=299.8
Q ss_pred ChhhHHhhcCCCCCCCCEEEEEEEEEeCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCCcEEEEEEEeeEe
Q 020119 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 80 (331)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~~~~~~~~~~~dg~~~g~~~~~~~D~~l~PD~~~~~ 80 (331)
|+.+++|++|+..+|++++.++|+|+|..|+++|||++++.++++.++++++|+||||++++.+++++|++|+||.++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a~~~~sD~~l~PDTl~~~ 140 (432)
T PLN03036 61 VNRVEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKD 140 (432)
T ss_pred hhhHHHHhhhcccccCCeEEEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCCcCCCCCEEEEccEEEEC
Confidence 46789999999999999999999999999999999999999999989889999999999999988999999999999999
Q ss_pred CCCCCCeEEEEEEeecCCCCcCCCChHHHHHHHHHHHhhcCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccc
Q 020119 81 PFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCG 160 (331)
Q Consensus 81 Pw~~~~~a~vl~d~~~~~G~P~~~~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (331)
||.++++++|+||+|++||+|++.|||.+|++++++++..|+++++|+|+|||||+.+..++.|++....|.++++||+.
T Consensus 141 Pw~~~~~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~ 220 (432)
T PLN03036 141 PFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCG 220 (432)
T ss_pred CcCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcccCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCC
Confidence 99765799999999999999999999999999999999999999999999999998654334466544456678888887
Q ss_pred CccchhhHHHHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccC
Q 020119 161 VGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQ 215 (331)
Q Consensus 161 ~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~ 215 (331)
.+.+..+.++++++++++|+++||+|+++|+|+|||| +||++||++|||||||+.
T Consensus 221 ~~~d~~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~ 300 (432)
T PLN03036 221 AGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE 300 (432)
T ss_pred chhhhhhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC
Confidence 7777666799999999999999999999999999999 999999999999999987
Q ss_pred CCCCCceeeeeecccccccCCChHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCCceeeccCCCcceeEeccc
Q 020119 216 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 295 (331)
Q Consensus 216 ~d~~GsG~H~H~Sl~~~~~~~g~n~~~~~i~gl~L~h~~al~a~~~NSYkRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~ 295 (331)
+|++|||||+|+|||++++++|.++|+++++|++|+|+++++||++||||||++++|||.|.+++||.+||+++||||..
T Consensus 301 gd~~GSGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~ 380 (432)
T PLN03036 301 GDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRD 380 (432)
T ss_pred CCcCCCCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhhhcChhhccCCCccccCCccceEeccCCcceEEECCC
Confidence 56899999999999986544578899999999559999999999999999999999997558999999999999999976
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 020119 296 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 331 (331)
Q Consensus 296 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~~ 331 (331)
....+++|||+|.||++|||||++|+|+.+.++.+|
T Consensus 381 ~~~~~~~riE~R~pda~aNPYLv~aai~~t~~~~~~ 416 (432)
T PLN03036 381 TEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416 (432)
T ss_pred CCCCcccEEEEeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 533346799999999999999999999999988765
No 3
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-81 Score=616.35 Aligned_cols=302 Identities=28% Similarity=0.427 Sum_probs=265.4
Q ss_pred CCCCEEEEEEEEEeCCCCceeeeEEeCCCCCCCCCCCC--cccccCCCC-CCCCCCCCcEEEEEEE--eeEeCCCCCCeE
Q 020119 14 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLP--KWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNI 88 (331)
Q Consensus 14 ~~~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~~~~~~~--~~~~dg~~~-g~~~~~~~D~~l~PD~--~~~~Pw~~~~~a 88 (331)
++.++++|+++|+|+.| .+|||++++..+.+.++... +..|||+++ ||..++++|++|+||+ ++++||.++.+|
T Consensus 11 ~~~~V~~v~~~f~D~~G-~~r~k~ip~~~~~~~~~~~~~~g~~fdgss~~g~~~i~~sDm~l~Pd~~T~~~~Pw~~~~ta 89 (443)
T COG0174 11 KENGVKFVDLRFTDLNG-VLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLKPDLSTLVVDPWREGPTA 89 (443)
T ss_pred HhCCceEEEEEEECCCC-CeeeEEEecccchhHHHhhhccCcCcCCccccccCCCCCCCEEEeeccCceeeCCCCCCCcE
Confidence 56889999999999999 99999999985333343333 467999999 8888799999999998 899999986699
Q ss_pred EEEEEeecCCCCcCCCChHHHHHHHHHHHhhcCCc-ceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCccccCccchhh
Q 020119 89 LVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE-PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAW 167 (331)
Q Consensus 89 ~vl~d~~~~~G~P~~~~pR~~Lk~~l~~l~~~G~~-~~~g~E~EF~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 167 (331)
+|+||+++++|+|++.|||++|||++++++++|+. +++|+|+|||||+.+.....+ +.+.++++||+..+++.
T Consensus 90 ~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~----~~~~~~~~yf~~~~~~~-- 163 (443)
T COG0174 90 RVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDG----GRPADKGGYFDVAPLDE-- 163 (443)
T ss_pred EEEEEEECCCCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCccc----CccCCCCcccCcccccc--
Confidence 99999999999999999999999999999999998 599999999999975431110 25677899999999887
Q ss_pred HHHHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccCCCCCCce
Q 020119 168 GRDIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDWNGAG 222 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~~d~~GsG 222 (331)
..+++.+|+.+|+++||++|.+|||+|||| +||++||+.|||||||+.| .+|||
T Consensus 164 ~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMpKP~~g-~~GSG 242 (443)
T COG0174 164 AEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFG-DNGSG 242 (443)
T ss_pred HHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeCCCCCC-CCCCc
Confidence 578888888888999999999999999999 9999999999999999996 89999
Q ss_pred eeeeecccccccCCChHHH-------------HHHHHHHHHHHHHHhhcccc---cccccC-CCCCCCCCCCceeeccCC
Q 020119 223 AHANYSTKSMRNDGGFEVI-------------KKAIEKLGLRHSEHIAAYGE---GNERRL-TGKHETADINTFKWGVAN 285 (331)
Q Consensus 223 ~H~H~Sl~~~~~~~g~n~~-------------~~~i~gl~L~h~~al~a~~~---NSYkRl-~p~~~ap~~~~~~WG~~N 285 (331)
||+|+|||+. +|.|+| .+||+|| |+|+++++||+| |||||| +|..||| ++++||.+|
T Consensus 243 MH~H~Sl~~~---dg~nlF~d~~~~~~lS~~~~~~igGi-lkha~~~~ai~~PtvNSYkRl~vp~e~AP--~~~~wg~~N 316 (443)
T COG0174 243 MHVHQSLWDK---DGGNLFADEDGYAGLSETALHFIGGI-LKHAPALTAITAPTVNSYKRLGVPYEWAP--TYIAWGVRN 316 (443)
T ss_pred eeEEEEEecC---CCCccccCCCCcccHHHHHHHHHHHH-HHHHHHHHhHhCCCcchhhhcCCCcccCc--chhcccccC
Confidence 9999999963 332544 5799999 999999999998 999999 6635699 999999999
Q ss_pred CcceeEecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 020119 286 RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329 (331)
Q Consensus 286 R~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g 329 (331)
||++||||.+.....+.|||+|+||+++||||++||+|+|||+|
T Consensus 317 Rsa~iRIP~~~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~G 360 (443)
T COG0174 317 RSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAAGLDG 360 (443)
T ss_pred cceEEEeCCCCCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999874333456999999999999999999999999999
No 4
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=2.5e-78 Score=603.48 Aligned_cols=299 Identities=24% Similarity=0.335 Sum_probs=258.6
Q ss_pred CCEEEEEEEEEeCCCCceeeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCCcEEEEEEE--eeEeCCCCCCeEEEE
Q 020119 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNILVM 91 (331)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~-~~~~~~~~~~dg~~~-g~~~~~~~D~~l~PD~--~~~~Pw~~~~~a~vl 91 (331)
.++++|+++|+|++| ++|||.++.+.+.+ .++ .|++|+++++ |+...+++|++++||+ ++++||.++++|+|+
T Consensus 10 ~~i~~v~~~~~Dl~G-~~rgk~vp~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~~~~a~v~ 86 (460)
T TIGR00653 10 ENVKFVDLRFTDIKG-KPQHVEIPASALDKEAFE--EGIMFDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVI 86 (460)
T ss_pred CCCcEEEEEEECCCC-CEeeEEEeHHHhhHHHhc--CCeecccccccccccCCCCcEEEeccCCcceeccCCCCCcEEEE
Confidence 679999999999999 99999999986643 233 2578999887 7767788999999998 899999765799999
Q ss_pred EEeecC-CCCcCCCChHHHHHHHHHHHh-hcCCcceEeeeeeEEEecCCCCCCC-------------------CCCCCCC
Q 020119 92 CDAYTP-AGEPIPTNKRHAAAKIFSHSD-VVAEEPWYGIEQEYTLLQKDVKWPL-------------------GWPIGGY 150 (331)
Q Consensus 92 ~d~~~~-~G~P~~~~pR~~Lk~~l~~l~-~~G~~~~~g~E~EF~l~~~~~~~~~-------------------g~~~~~~ 150 (331)
||+++. ||+|++.|||++|||++++++ ++|+++++|+|+|||||+.+..... ++. ...
T Consensus 87 ~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 165 (460)
T TIGR00653 87 CDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNR-GYK 165 (460)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccccccccCCcC-CCc
Confidence 999998 999999999999999999999 8999999999999999986442000 110 112
Q ss_pred CCCCCCccccCccchhhHHHHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCC
Q 020119 151 PGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGV 205 (331)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl 205 (331)
+.+.+.||+..+.+. ..+++++|++.|+++||+|+++|+|+|||| +||++||+
T Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~ 243 (460)
T TIGR00653 166 PRDKGGYFPVAPTDT--AVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGK 243 (460)
T ss_pred ccCCccccCCCCccc--HHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555777776665 478888899999999999999999999999 99999999
Q ss_pred eeeecccccCCCCCCceeeeeecccccccCCChHHH-------------HHHHHHHHHHHHHHhhcccc---cccccCCC
Q 020119 206 VLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVI-------------KKAIEKLGLRHSEHIAAYGE---GNERRLTG 269 (331)
Q Consensus 206 ~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~~g~n~~-------------~~~i~gl~L~h~~al~a~~~---NSYkRl~p 269 (331)
+|||||||+.+ .+|||+|+|+|||+ +|+|+| ++|++|| |+|+++++||++ ||||||+|
T Consensus 244 ~ATFmpKP~~~-~~GSG~H~H~Sl~d----~g~n~F~d~~~~~~lS~~~~~fiaGi-L~h~~~l~a~~~PtvNSYkRl~p 317 (460)
T TIGR00653 244 TATFMPKPLFG-DNGSGMHCHQSLWK----DGENLFAGEEGYAGLSETALYYIGGI-LKHAKALAAFTNPTVNSYKRLVP 317 (460)
T ss_pred EEEEecccCCC-CCcCceeEEECccC----CCeeccCCCCCCcccCHHHHHHHHHH-HHHHHHhhhHhcCCCcchhhcCC
Confidence 99999999995 89999999999998 344443 5799999 999999999998 99999999
Q ss_pred CCCCCCCCceeeccCCCcceeEecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 020119 270 KHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329 (331)
Q Consensus 270 ~~~ap~~~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g 329 (331)
++||| ++++||.+||+++||||.... ...+|||+|++|++|||||++||+|+|||+|
T Consensus 318 ~~~ap--~~~~WG~~NR~a~iRvp~~~~-~~~~riE~R~~da~aNPYLalAa~laAGl~G 374 (460)
T TIGR00653 318 GYEAP--VYLAYSARNRSALIRIPASGN-PKAKRIEFRFPDPSANPYLAFAAMLMAGLDG 374 (460)
T ss_pred CCcCc--ceeecccCCCCceEEecCCCC-CcCceEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999 899999999999999996531 3456999999999999999999999999999
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=9.8e-78 Score=600.05 Aligned_cols=299 Identities=22% Similarity=0.299 Sum_probs=257.0
Q ss_pred CCEEEEEEEEEeCCCCceeeeEEeCCCCCC-CCCCCCcccccCCCC-CCCCCCCCcEEEEEEE--eeEeCCCCCCeEEEE
Q 020119 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVS-DPSKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGNNILVM 91 (331)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~-~~~~~~~~~~dg~~~-g~~~~~~~D~~l~PD~--~~~~Pw~~~~~a~vl 91 (331)
.++++|++.|+|++| ++|||.++.+.+.+ .+++ |+.||++++ |+...+++|++++||+ ++++||.+.++|+|+
T Consensus 13 ~~i~~v~~~~~Dl~G-~~rgk~ip~~~~~~~~~~~--G~~f~~~~~~g~~~~~~~D~~l~PD~~Tl~~~Pw~~~~~a~v~ 89 (469)
T PRK09469 13 HEVKFVDLRFTDTKG-KEQHVTIPAHQVNADFFEE--GKMFDGSSIGGWKGINESDMVLMPDASTAVLDPFFEDSTLIIR 89 (469)
T ss_pred CCCCEEEEEEECCCC-CEeEEEEEHHHhhHHHhcC--CceeccccccccCcCCCCCEEEEEcCCccEECCcCCCCcEEEE
Confidence 578999999999999 99999999986653 2332 578999888 7767789999999998 899999654699999
Q ss_pred EEeecCC-CCcCCCChHHHHHHHHHHHhhcCC--cceEeeeeeEEEecCCCC--CCC---------------------CC
Q 020119 92 CDAYTPA-GEPIPTNKRHAAAKIFSHSDVVAE--EPWYGIEQEYTLLQKDVK--WPL---------------------GW 145 (331)
Q Consensus 92 ~d~~~~~-G~P~~~~pR~~Lk~~l~~l~~~G~--~~~~g~E~EF~l~~~~~~--~~~---------------------g~ 145 (331)
||+++.+ |+|++.|||++|||++++++++|+ ++++|+|+|||||++... .+. +.
T Consensus 90 ~d~~~~~~g~p~~~~PR~iLkr~~~~l~~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (469)
T PRK09469 90 CDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYEGGN 169 (469)
T ss_pred EEEEECCCCCcCCcCHHHHHHHHHHHHHHcCCCcceeEecceEEEEEeccccccCccccccccccchhcccccccccCCC
Confidence 9999985 899999999999999999999999 999999999999985330 000 00
Q ss_pred CCCCCCCCCCCccccCccchhhHHHHHHHHHHHHHHcCceeeeecCCCC-chH-------------------------HH
Q 020119 146 PIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVM-PGQ-------------------------RI 199 (331)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~g-pGQ-------------------------~v 199 (331)
. ...+.+.+.||+..+.+. ..+++++|+++|+++||+|+++|||+| ||| +|
T Consensus 170 ~-~~~~~~~~~~y~~~~~~~--~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~v 246 (469)
T PRK09469 170 K-GHRPGVKGGYFPVPPVDS--SQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNV 246 (469)
T ss_pred C-CCccCCCccccCCCcccc--hHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 0 002333444677777766 588999999999999999999999999 599 99
Q ss_pred HHHcCCeeeecccccCCCCCCceeeeeecccccccCCChHHH------------HHHHHHHHHHHHHHhhcccc---ccc
Q 020119 200 TEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVI------------KKAIEKLGLRHSEHIAAYGE---GNE 264 (331)
Q Consensus 200 A~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~~g~n~~------------~~~i~gl~L~h~~al~a~~~---NSY 264 (331)
|++||++|||||||+.+ .+|||||+|+|||+ +|.|+| ++||+|| |+|+++++||++ |||
T Consensus 247 a~~~g~~atFmpKP~~~-~~GsG~H~H~Sl~~----~g~N~F~~~~~~~ls~~~~~fiaGl-L~h~~~l~a~~~PtvNSY 320 (469)
T PRK09469 247 AHAFGKTATFMPKPMFG-DNGSGMHCHMSLSK----NGVNLFAGDKYAGLSEQALYYIGGI-IKHAKAINALANPTTNSY 320 (469)
T ss_pred HHHhCCEEEEeccccCC-CCCceeEEEEeecC----CCccccCCCCcCCcCHHHHHHHHHH-HHHHHHHHhhhcCCCchH
Confidence 99999999999999995 89999999999998 455655 4799999 999999999997 999
Q ss_pred ccCCCCCCCCCCCceeeccCCCcceeEecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 020119 265 RRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329 (331)
Q Consensus 265 kRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g 329 (331)
|||+|++||| ++++||.+||+++||||... ..+.+|||+|+||++|||||++||+|+|||+|
T Consensus 321 kRl~p~~~ap--~~~~WG~~NR~a~iRvp~~~-~~~~~riE~R~~da~aNPYL~~AaiLaAGldG 382 (469)
T PRK09469 321 KRLVPGYEAP--VMLAYSARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDG 382 (469)
T ss_pred hhcCCCCcCc--CcceecCCCCcceEEeccCC-CCCCceEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999522 22456999999999999999999999999999
No 6
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=4.3e-76 Score=584.12 Aligned_cols=291 Identities=20% Similarity=0.240 Sum_probs=249.7
Q ss_pred CCEEEEEEEEEeCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCC--CCCCCCCcEEEEEEE--eeEeCCCCCCeEEEE
Q 020119 16 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTG--QAPGEDSEVILYPQA--IFKDPFRRGNNILVM 91 (331)
Q Consensus 16 ~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~~~~~~~~~~~dg~~~g--~~~~~~~D~~l~PD~--~~~~Pw~~~~~a~vl 91 (331)
.++.+|+++|+|++| ++|||.++.+.+.+.+++ |.+|+++++. ....+++|++|+||+ ++++||.+ ++++|+
T Consensus 8 ~~i~~v~~~~~D~~G-~~r~k~vp~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~D~~l~PD~~Tl~~~pw~~-~~a~v~ 83 (435)
T TIGR03105 8 KGIKYFLASFVDLHG-VQKAKLVPAEAIDHMATG--GAGFAGFAAWGLGQSPADPDLMAIPDLDSLTQLPWQP-GVAWVA 83 (435)
T ss_pred CCCCEEEEEEECCCC-CeeEEEEeHHHHHHHHcC--CCcccchhhhccCCCCCCCCEEEEeccccceeCCCCC-CeEEEE
Confidence 478999999999999 999999999766553332 5677777663 224467999999998 89999987 799999
Q ss_pred EEeecCCCCcCCCChHHHHHHHHHHHhhcCCcceEeeeeeEEEecCCCCCCCCCCC--CCCCCCCCCccccCccchhhHH
Q 020119 92 CDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPI--GGYPGPQGPYYCGVGADKAWGR 169 (331)
Q Consensus 92 ~d~~~~~G~P~~~~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 169 (331)
||++. +|+|++.|||++|||++++++++|+++++|+|+|||||+.+.+ +.+. ...+....++|+..+.+. ..
T Consensus 84 ~d~~~-~G~p~~~~PR~vL~r~~~~~~~~G~~~~~g~E~EF~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~ 157 (435)
T TIGR03105 84 ADLHV-NGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDED---GSLSIADRADTLAKPCYDQRGLMR--RY 157 (435)
T ss_pred EEEee-CCCcCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCC---CCcccCCCCCCCCccCCCCcchhh--hh
Confidence 99976 8999999999999999999999999999999999999987543 2111 101111233566665554 57
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccCCCCCCceee
Q 020119 170 DIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDWNGAGAH 224 (331)
Q Consensus 170 ~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~~d~~GsG~H 224 (331)
+++++|++.|+++||+|+++|+|+|||| +||++||++|||||||+. +.+|||+|
T Consensus 158 ~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~-~~~GsG~H 236 (435)
T TIGR03105 158 DVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFA-DLTGNGCH 236 (435)
T ss_pred HHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCC-CCCccceE
Confidence 8999999999999999999999999999 999999999999999999 49999999
Q ss_pred eeecccccccCCChHHH---------------HHHHHHHHHHHHHHhhcccc---cccccCCCC------CCCCCCCcee
Q 020119 225 ANYSTKSMRNDGGFEVI---------------KKAIEKLGLRHSEHIAAYGE---GNERRLTGK------HETADINTFK 280 (331)
Q Consensus 225 ~H~Sl~~~~~~~g~n~~---------------~~~i~gl~L~h~~al~a~~~---NSYkRl~p~------~~ap~~~~~~ 280 (331)
+|+|||+. +|+|+| ++|++|| |+|+++++||++ ||||||+|+ +||| ++++
T Consensus 237 ~H~Sl~d~---~g~n~f~d~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP--~~~~ 310 (435)
T TIGR03105 237 FHLSLWDE---DGRNLFADDSDPNGLGLSKLAYHFIGGI-LHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAP--NFIS 310 (435)
T ss_pred EEEeeecC---CCcccccCCCCCccccccHHHHHHHHHH-HHHHHHHHHHHCCCCccccccCCCcCCcCcccCC--ceee
Confidence 99999973 455554 4699999 999999999997 999999995 7999 9999
Q ss_pred eccCCCcceeEecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 020119 281 WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329 (331)
Q Consensus 281 WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g 329 (331)
||.+||+++||||. .+|||+|++|++|||||++||+|+||++|
T Consensus 311 WG~~NR~a~iRv~~------~~riE~R~~da~aNPYL~lAailaAgl~G 353 (435)
T TIGR03105 311 YGGNNRTHMVRIPD------PGRFELRLADGAANPYLAQAAILAAGLDG 353 (435)
T ss_pred ccCCCCceeEeccC------CCeeEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999993 36999999999999999999999999999
No 7
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=7.5e-63 Score=460.13 Aligned_cols=213 Identities=28% Similarity=0.476 Sum_probs=174.7
Q ss_pred CCChHHHHHHHHHHHhhcCCcceEeeeeeEEEecCCCCCCCCCCC-CCCC----CCCCCccccCccchhhHHHHHHHHHH
Q 020119 103 PTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPI-GGYP----GPQGPYYCGVGADKAWGRDIVDSHYK 177 (331)
Q Consensus 103 ~~~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g~~~-~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~ 177 (331)
+.|||++|||+++++++.|+++++|+|+|||||+.+.. .+++. .+.+ ...++||+..+.+. ..++++++++
T Consensus 1 ~~~PR~~Lkr~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 76 (259)
T PF00120_consen 1 EACPRSILKRVLERLEEMGLSFKVGFELEFYLFDRDDD--GGWPRPSGYPDEPGQDYGGYYSLSPLDA--GEDFLEEIVD 76 (259)
T ss_dssp -T-HHHHHHHHHHHHHHTCCEEEEEEEEEEEEESTCEE--TTSSSTTSEESESSSTTTBSSTTTTTST--THHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEeEEEEEeccCcc--cccccccccccccccccCCcCCCchhhH--HHHHHHHHHH
Confidence 47999999999999999999999999999999998642 12221 1111 13456677666554 5889999999
Q ss_pred HHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccCCCCCCceeeeeeccccc
Q 020119 178 ACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSM 232 (331)
Q Consensus 178 ~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~ 232 (331)
+|+++||+|+++|+|+|||| +||++||++|||||||+.+ .+|||+|+|+|||+.
T Consensus 77 ~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~-~~GsG~H~h~Sl~~~ 155 (259)
T PF00120_consen 77 ALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSG-DNGSGMHLHISLWDA 155 (259)
T ss_dssp HHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTT-SS--BEEEEEEECHH
T ss_pred HHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCC-cCccchhhhhhhhhc
Confidence 99999999999999999999 9999999999999999995 899999999999974
Q ss_pred ccCCChHH-------------HHHHHHHHHHHHHHHhhcccc---cccccCCCCCCCCCCCceeeccCCCcceeEecccC
Q 020119 233 RNDGGFEV-------------IKKAIEKLGLRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRVGRDT 296 (331)
Q Consensus 233 ~~~~g~n~-------------~~~~i~gl~L~h~~al~a~~~---NSYkRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~~ 296 (331)
. +|+|+ .++|++|| |+|+++|+||++ ||||||+|++||| ++++||.+||+++||||...
T Consensus 156 ~--~g~n~f~~~~~~~~ls~~~~~flaGl-l~h~~~l~a~~~pt~nsykRl~~~~~ap--~~~~wG~~NR~a~iRi~~~~ 230 (259)
T PF00120_consen 156 K--DGKNLFYDPDGPAGLSELARHFLAGL-LKHAPALTAFTAPTVNSYKRLVPGSWAP--TYISWGYDNRSAAIRIPSGG 230 (259)
T ss_dssp H--TTEETTBSTTSHGHHHHHHHHHHHHH-HCHHHHHHHCHSTSTTHHHHSSSTSSSS--SBEEEEESHTTSSEEE-HHH
T ss_pred c--ccccccccccccccccHHHHHHHHHH-HHHHHHHHhhhCccCcchhhCCCCccce--eccchhhcccchhhheeccc
Confidence 1 23332 34799999 999999999987 9999999999999 99999999999999999851
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHHHHh
Q 020119 297 EKEGKGYFEDRRPASNMDPYVVTSMIAETT 326 (331)
Q Consensus 297 ~~~~~~riE~R~~da~aNPYLalAailaAg 326 (331)
.++.+|||+|+||++|||||++||+|+||
T Consensus 231 -~~~~~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 231 -GPKGTRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp -HHGGSEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred -cccccEEeccCCCCCcCHHHHHHHHHhcC
Confidence 12357999999999999999999999998
No 8
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-48 Score=361.45 Aligned_cols=324 Identities=63% Similarity=1.113 Sum_probs=299.7
Q ss_pred HHhhcCCCCCCCCEEEEEEEEEeCCCCceeeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCCcEEEEEEEeeEeCCCC
Q 020119 5 SDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRR 84 (331)
Q Consensus 5 ~~~~~~~~~~~~~~~~v~~~~~D~~G~~~rgk~~~~~~~~~~~~~~~~~~~dg~~~g~~~~~~~D~~l~PD~~~~~Pw~~ 84 (331)
.+|+. |+.+.+++.+.++|+|..|+.+|+|+++++..++.+.++|.|.|||++++++...+||.+|+|..+++.|++.
T Consensus 18 ~~~~~--L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~lp~wnydgsst~QA~g~nSd~~l~Pva~~~dPfr~ 95 (380)
T KOG0683|consen 18 LEYLY--LRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISELPIWNYDGSSTGQAPGENSDVYLRPVAIYPDPFRN 95 (380)
T ss_pred hhhcc--ccccCceEEEEEEEecCccccchhhcccccCCccCcccCccccccCcccccccCCCCceEEeehhhcCCcccC
Confidence 34444 4666899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeecCCCCcCCCChHHHHHHHHHHHhhcCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCccccCccc
Q 020119 85 GNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGAD 164 (331)
Q Consensus 85 ~~~a~vl~d~~~~~G~P~~~~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 164 (331)
++..+|+|+.++.+|.|.+.+-|..+.+.+...+-..-.+++|.|+||.+++....+++|||..+.|..+++||+..+.+
T Consensus 96 g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpyyc~VGad 175 (380)
T KOG0683|consen 96 GNNILVMCDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPYYCGVGAD 175 (380)
T ss_pred CCCEEEEeeccCCCCCcccccchhhHHHHhccccccccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCceeecccc
Confidence 88999999999999999999999999999998877788999999999999998555799999989999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHcCceeeeecCCCCchH-------------------------HHHHHcCCeeeecccccCCCCC
Q 020119 165 KAWGRDIVDSHYKACLYAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDWN 219 (331)
Q Consensus 165 ~~~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~~d~~ 219 (331)
+.+.++++++.+++|..+||.+..++.|++||| +||+++|+.|||.|||..+||+
T Consensus 176 ~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp~~g~Wn 255 (380)
T KOG0683|consen 176 RVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWN 255 (380)
T ss_pred ccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCCCCCccc
Confidence 888899999999999999999999999999999 9999999999999999998999
Q ss_pred CceeeeeecccccccCCChHHHHHHHHHHHHHHHHHhhcc----cccccccCCCCCCCCCCCceeeccCCCcceeEeccc
Q 020119 220 GAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRD 295 (331)
Q Consensus 220 GsG~H~H~Sl~~~~~~~g~n~~~~~i~gl~L~h~~al~a~----~~NSYkRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~ 295 (331)
|+|+|.++|..+++.++|..++..++..++..|..++.+. .-..-+||..-+++.....++||.-||.+.||||..
T Consensus 256 gaG~Htn~ST~~mr~~~g~~~i~~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r~ 335 (380)
T KOG0683|consen 256 GAGCHTNFSTKEMREAGGLKIIEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPRT 335 (380)
T ss_pred CcccccccchhHHHhccCHHHHHHHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeechh
Confidence 9999999999887777888888889999999999999998 346688998777888889999999999999999998
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 020119 296 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 330 (331)
Q Consensus 296 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 330 (331)
....+++.+|.|.||.++.||+|..+++-..|+.+
T Consensus 336 va~~~~Gy~edrrP~sN~Dpy~Vt~~~~~t~l~~~ 370 (380)
T KOG0683|consen 336 VAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEA 370 (380)
T ss_pred hhcccccccccCCCcCCCCcceeeHHHhhHHHhcc
Confidence 87777889999999999999999999998887753
No 9
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.58 E-value=7.3e-15 Score=114.42 Aligned_cols=78 Identities=26% Similarity=0.415 Sum_probs=63.9
Q ss_pred CEEEEEEEEEeCCCCceeeeEEeCCCC-CCCCCCCCcccccCCCC-CCCCCCCCcEEEEEEE--eeEeCCCCCC--eEEE
Q 020119 17 DKIIAEYIWIGGSGMDMRSKARTLPGP-VSDPSKLPKWNYDGSST-GQAPGEDSEVILYPQA--IFKDPFRRGN--NILV 90 (331)
Q Consensus 17 ~~~~v~~~~~D~~G~~~rgk~~~~~~~-~~~~~~~~~~~~dg~~~-g~~~~~~~D~~l~PD~--~~~~Pw~~~~--~a~v 90 (331)
++++|++.|+|+.| .+|.++++...+ .+.++ .+++||||++ ||+++++|||+|+||+ ++++||.+++ +++|
T Consensus 1 ~V~~v~~~f~D~~G-~~~~~~i~~~~~~~~~~~--~g~~fDGSSi~g~~~~~~SDm~l~Pd~~t~~~~P~~~~~~~~~~v 77 (84)
T PF03951_consen 1 NVKFVDLQFTDLFG-RLKHVTIPASEFDEDALE--DGIGFDGSSIRGFATIEESDMYLKPDPSTFFIDPWRPDPGKTARV 77 (84)
T ss_dssp T-EEEEEEEE-TTS-SEEEEEEEGCCESCSGGG--S-EEEECCGTTTSSBSCCEEEEEEEEGGEEEESTTTSTT-TEEEE
T ss_pred CeEEEEEEEEcCCC-CcceEEEEHHHCCchHhh--CCCCCCcccCcCcccCCCCCEEEecCcccEEECccCCCCceEEEE
Confidence 47899999999999 999999987655 22122 2579999999 9999999999999996 8999999754 9999
Q ss_pred EEEeecC
Q 020119 91 MCDAYTP 97 (331)
Q Consensus 91 l~d~~~~ 97 (331)
+||+|+|
T Consensus 78 ~cdv~~P 84 (84)
T PF03951_consen 78 ICDVYDP 84 (84)
T ss_dssp EEEEEST
T ss_pred EEEeECc
Confidence 9999974
No 10
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=127.30 Aligned_cols=189 Identities=27% Similarity=0.392 Sum_probs=125.6
Q ss_pred CcceEeeeeeEEEecCCCCC--C----CCCCCCCCCCCCC-----CccccCccchhhHHHHHHHHHHHHHHcCceeeeec
Q 020119 122 EEPWYGIEQEYTLLQKDVKW--P----LGWPIGGYPGPQG-----PYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190 (331)
Q Consensus 122 ~~~~~g~E~EF~l~~~~~~~--~----~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h 190 (331)
.-..+|.|+||||++..... + .|+...+.+...| .||...+-. ...++.++...|-++||++..-|
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeR---V~~FM~Dve~~LyaLGIpaKTrH 290 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPER---VSAFMKDVEKELYALGIPAKTRH 290 (724)
T ss_pred hccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccHHH---HHHHHHHHHHHHHHcCCcccccc
Confidence 45789999999999875320 0 0111112333333 455544422 24555556666689999999999
Q ss_pred CCCCchH-------------------------HHHHHcCCeeeecccccCCCCCCceeeeeecccccccCCChHHHH---
Q 020119 191 GEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIK--- 242 (331)
Q Consensus 191 ~E~gpGQ-------------------------~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~~g~n~~~--- 242 (331)
.|++||| .+|++||+.....-|||.| .+|||-|+|+|+-. .+|.|+..
T Consensus 291 NEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAG-iNGSGKH~NWSmGt---d~g~NLLdPgD 366 (724)
T COG3968 291 NEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAG-INGSGKHNNWSMGT---DDGLNLLDPGD 366 (724)
T ss_pred cccCCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccC-cCCCCCcccccccc---CCCcccCCCCC
Confidence 9999999 7999999999999999997 99999999999964 24555431
Q ss_pred -------------HHHHHHHHHHHHHhhcccc--cccccCCCCCCCCCCCc-----------------------------
Q 020119 243 -------------KAIEKLGLRHSEHIAAYGE--GNERRLTGKHETADINT----------------------------- 278 (331)
Q Consensus 243 -------------~~i~gl~L~h~~al~a~~~--NSYkRl~p~~~ap~~~~----------------------------- 278 (331)
..|-++ -++.+-|-|-.+ .+-.||-.+ +||+ .-
T Consensus 367 ~PhdN~QFL~Fc~AvIkaV-dkY~~LlRa~~a~AsNDhRLGAN-EAPP-AI~SVflGdqLedifEqi~~G~~~ssk~~g~ 443 (724)
T COG3968 367 MPHDNKQFLLFCTAVIKAV-DKYADLLRASAANASNDHRLGAN-EAPP-AIISVFLGDQLEDIFEQIEKGKATSSKGNGK 443 (724)
T ss_pred CCCccceeehhhHHHHHHH-HHHHHHHHHHHhccCCccccccC-CCCc-ceeEeeccchHHHHHHHHhcCCCcccccCcc
Confidence 235555 555554444332 335677543 4442 22
Q ss_pred ------------eeeccCCCcceeEecccCCCCCccEEEecCCCCC---CCHHHHHHHHHHHhh
Q 020119 279 ------------FKWGVANRGASIRVGRDTEKEGKGYFEDRRPASN---MDPYVVTSMIAETTI 327 (331)
Q Consensus 279 ------------~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~---aNPYLalAailaAgl 327 (331)
..-|.+||+.+.-... .+||+|.++++ +-|-.+|-+++|--|
T Consensus 444 mdLg~~vlP~v~kdAgDRNRTSPFAFTG-------NkFEFRavgSSqSvs~P~tVLN~~vAesl 500 (724)
T COG3968 444 MDLGISVLPAVEKDAGDRNRTSPFAFTG-------NKFEFRAVGSSQSVSEPNTVLNVIVAESL 500 (724)
T ss_pred cccchhhccccccccccccCCCCceecc-------ceeeEecCCcccccccchHHHHHHHHHHH
Confidence 2334566666655442 58999999876 568889888887543
No 11
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=97.84 E-value=0.0003 Score=66.92 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCceeee--ecCCC-------CchH---HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISG--INGEV-------MPGQ---RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~--~h~E~-------gpGQ---~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
....+..+.+++++.|+.+-. +|.-. .|.+ .+.+++|.. -. ...-+|+|+|+++-+
T Consensus 64 l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~-------~~-~~~~~g~hVhv~v~d---- 131 (287)
T TIGR02050 64 IRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYV-------AR-QQLVFGLHVHVGVPS---- 131 (287)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHH-------HH-hHceeeEEEEeCCCC----
Confidence 456667777777888876543 33322 2222 677777632 22 245689999999964
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccccc------------cccCC----CCCCCCCCCceeec--------------cCC
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEGN------------ERRLT----GKHETADINTFKWG--------------VAN 285 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~NS------------YkRl~----p~~~ap~~~~~~WG--------------~~N 285 (331)
+.. +-..+..+ ..++|.+.|+++|| ||... |..--| +..-+|. ..+
T Consensus 132 -~~~-~i~~~n~l-~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~p~~G~p-~~f~~~~~y~~~~~~l~~~g~i~~ 207 (287)
T TIGR02050 132 -PDD-AVAVLNRL-LPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAWPTAGLP-PAFGSWDAFEAYFADLLETGVIDD 207 (287)
T ss_pred -HHH-HHHHHHHH-HHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhCCCCCCC-CcCCCHHHHHHHHHHHHHcCCcCC
Confidence 222 32445556 77788888887643 32111 222122 2555553 122
Q ss_pred Ccce---eEecccCCCCCccEEEecCCCCCCCH--HHHHHHHHHHhh
Q 020119 286 RGAS---IRVGRDTEKEGKGYFEDRRPASNMDP--YVVTSMIAETTI 327 (331)
Q Consensus 286 R~a~---iRvp~~~~~~~~~riE~R~~da~aNP--YLalAailaAgl 327 (331)
+... ||... +-.+||+|++|+..++ .+++||++.+-+
T Consensus 208 ~~~iww~vRp~~-----~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv 249 (287)
T TIGR02050 208 DGDLWWDIRPSP-----HFGTVEVRVADTCLNLEHAVAIAALIRALV 249 (287)
T ss_pred CCeeEEEeccCC-----CCCCeeEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 2222 44332 3468999999988765 556666665543
No 12
>PRK13517 carboxylate-amine ligase; Provisional
Probab=97.65 E-value=0.00044 Score=68.08 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHcCceeee--ecCCCCch-------H---HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISG--INGEVMPG-------Q---RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~--~h~E~gpG-------Q---~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
....+..+.+.+++.|+.+-. +|+=..+. . .+.+++|.. -. ...-+|+|+|+++-+
T Consensus 75 L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~-------~~-~~~~~g~hVhv~v~~---- 142 (373)
T PRK13517 75 LRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWW-------AR-QQLICGVHVHVGVPS---- 142 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHH-------HH-hheeeeeEEEeCCCC----
Confidence 456666777777888876653 44433222 1 666666621 12 235679999999964
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccccc
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEGN 263 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~NS 263 (331)
.. -+-.....+ ..++|.|.|+++||
T Consensus 143 -~~-~~i~~~n~l-~~~lP~llALsAnS 167 (373)
T PRK13517 143 -RE-KVVPVINRL-RPWLPHLLALSANS 167 (373)
T ss_pred -HH-HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 11 233455667 88889999998754
No 13
>PRK13515 carboxylate-amine ligase; Provisional
Probab=97.50 E-value=0.0017 Score=63.90 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHcCceeee--ecCC-------CCchH---HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISG--INGE-------VMPGQ---RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~--~h~E-------~gpGQ---~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
...+...+.+.++..|+.+-. .|.= .-|.+ ++.+++|..+ . ...-+|+|||+++-+
T Consensus 69 L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~-------~-~~~~~g~HVhv~~~d---- 136 (371)
T PRK13515 69 LGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVA-------R-RNLICGLHVHVGIPD---- 136 (371)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHH-------H-hhceeeeEEEeCCCC----
Confidence 466667777788888887753 3332 22333 6666665321 1 234679999999964
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccccc
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEGN 263 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~NS 263 (331)
+ .-+......+ ...+|.|.|+++||
T Consensus 137 -~-e~~~~~~n~~-~~~lP~llALsanS 161 (371)
T PRK13515 137 -R-EDRIDLMNQV-RYFLPHLLALSTSS 161 (371)
T ss_pred -H-HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 2 1233445566 77788888888766
No 14
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.23 E-value=0.0036 Score=61.72 Aligned_cols=137 Identities=18% Similarity=0.137 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHcCceeeee--cCCC-------CchH---HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISGI--NGEV-------MPGQ---RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~~--h~E~-------gpGQ---~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
....+..+.+.++..|+.+-.. |.=. -+.+ .+.+++|+ ++| ...-+|+|||+.+-+
T Consensus 76 L~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~----~~~----~~~i~G~HVHvg~~d---- 143 (373)
T PRK13516 76 LSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGY----LAK----QFTVFGQHVHIGCPS---- 143 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhh----hhh----hheeeeeEEEeCCCC----
Confidence 4566667777778888766443 3211 1221 78888884 333 234678999999854
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccccc------------ccccCC----CCCCCCCCCceeeccC--------------C
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEG------------NERRLT----GKHETADINTFKWGVA--------------N 285 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~N------------SYkRl~----p~~~ap~~~~~~WG~~--------------N 285 (331)
+...+ ..+..+ ..++|.|.|+++| |||-.+ |..--| |..-+|..= +
T Consensus 144 -~~~av-~~~~~l-~~~lP~llALsAsSPf~~G~dTG~~S~R~~~~~~~P~~G~p-p~~~~~~~y~~~~~~l~~~G~i~d 219 (373)
T PRK13516 144 -GDDAL-YLLHGL-SRYVPHFIALSASSPYVQGVDTGFASARLNSVSAFPLSGRA-PFVLNWQEFEAYFRKMSYTGVIDS 219 (373)
T ss_pred -HHHHH-HHHHHH-HhHhHHHHHHHhCCccccCcCCcchhHHHHHHhcCCCCCCC-CCcCCHHHHHHHHHHHHHcCCcCC
Confidence 22122 345556 7777888888763 343321 322112 245555510 0
Q ss_pred -Cc--ceeEecccCCCCCccEEEecCCCCCCCHHH--HHHHHHHH
Q 020119 286 -RG--ASIRVGRDTEKEGKGYFEDRRPASNMDPYV--VTSMIAET 325 (331)
Q Consensus 286 -R~--a~iRvp~~~~~~~~~riE~R~~da~aNPYL--alAailaA 325 (331)
+. =-|| |+ ..-..||+|++|...++-- ++||++.|
T Consensus 220 ~~~~~WdvR-p~----~~~~TvEiRv~D~~~~~~~~~~iaal~~a 259 (373)
T PRK13516 220 MKDFYWDIR-PK----PEFGTVEVRVMDTPLTLERAAAIAAYIQA 259 (373)
T ss_pred CCeeEEEec-cC----CCCCCeEEecCCCCCCHHHHHHHHHHHHH
Confidence 00 0255 22 2345899999999999864 44555544
No 15
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0067 Score=58.52 Aligned_cols=136 Identities=20% Similarity=0.208 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCceeeeecCCCCchH--------------HHHHHcCCeeeecccccCCCCCCceeeeeecccccc
Q 020119 168 GRDIVDSHYKACLYAGINISGINGEVMPGQ--------------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR 233 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ--------------~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~ 233 (331)
++++...+.++....|+.+-.. -.-|+| ++-++.|+.++=| -=-|.|||+.+-+
T Consensus 67 ~r~~r~~l~q~a~d~gL~~~~~--GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~--------~v~G~HVHVGi~~-- 134 (369)
T COG2170 67 LRALRDYLVQAASDHGLRICGG--GTHPFADWRRQEVPDNPRYQRLIERTGYLGRQM--------TVAGQHVHVGIPS-- 134 (369)
T ss_pred HHHHHHHHHHHhhhcCceeccc--CCCchhhhhhccCCCChhHHHHHHHhhhHHhhe--------eeeeEEEEecCCC--
Confidence 5666666666666667766543 233666 6666666654322 2348999999965
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhcccc------------cccccCC----CCC-CCCCCCceeec--------------
Q 020119 234 NDGGFEVIKKAIEKLGLRHSEHIAAYGE------------GNERRLT----GKH-ETADINTFKWG-------------- 282 (331)
Q Consensus 234 ~~~g~n~~~~~i~gl~L~h~~al~a~~~------------NSYkRl~----p~~-~ap~~~~~~WG-------------- 282 (331)
...+. ..+.++ +.++|.+.|+.+ -|+|+-. |.. -.| ...+|+
T Consensus 135 ---~d~~~-~~l~~l-~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~g~pp--~f~sw~~f~~~~~~~~~tG~ 207 (369)
T COG2170 135 ---PDDAM-YLLHRL-LRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTNGLPP--AFQSWAAFEAFFRDQLETGT 207 (369)
T ss_pred ---HHHHH-HHHHHH-HhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcCCCCc--cccCHHHHHHHHHHHHHhcc
Confidence 22233 567888 999999999975 2555543 211 122 556665
Q ss_pred cCCCc---ceeEecccCCCCCccEEEecCCCCCCCHH--HHHHHHHHHhh
Q 020119 283 VANRG---ASIRVGRDTEKEGKGYFEDRRPASNMDPY--VVTSMIAETTI 327 (331)
Q Consensus 283 ~~NR~---a~iRvp~~~~~~~~~riE~R~~da~aNPY--LalAailaAgl 327 (331)
.+|.- -.||-- +.-+++|+|++|...||= ++++|++.|-+
T Consensus 208 I~~~~~lwwdIRPs-----ph~gTlEvRi~D~~~~l~~~~aivaL~~Alv 252 (369)
T COG2170 208 IDSMGDLWWDIRPS-----PHLGTLEVRICDTVLNLAELLAIVALIHALV 252 (369)
T ss_pred cccccceEEecccC-----CCCCceEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 22222 123321 234799999999999995 56667776654
No 16
>PRK13518 carboxylate-amine ligase; Provisional
Probab=95.44 E-value=0.48 Score=46.55 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCceeeee--cCCCC-------chH---HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISGI--NGEVM-------PGQ---RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~~--h~E~g-------pGQ---~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
.......+.+++++.|+.+-.. |+-.. |+. .+.+++|+.+- ...=+|+|||+.+-+
T Consensus 77 L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~--------~~~~~G~HVHVg~~d---- 144 (357)
T PRK13518 77 LREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQH--------RNTTAGLHVHVGVDD---- 144 (357)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchh--------cceeeEEEEEeCCCC----
Confidence 4666777888889999877643 32222 222 66666664331 123579999999854
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcccccc
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEGN 263 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~NS 263 (331)
....+ ..+..+ .-++|.|.|+++||
T Consensus 145 -~d~av-~v~n~l-r~~LP~LlALsAnS 169 (357)
T PRK13518 145 -ADKAV-WIANEL-RWHLPILLALSANS 169 (357)
T ss_pred -HHHHH-HHHHHH-HhHHHHHHHHHcCC
Confidence 22112 223455 66779999997643
No 17
>PLN02611 glutamate--cysteine ligase
Probab=95.07 E-value=0.19 Score=51.12 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=24.0
Q ss_pred CceeeeeecccccccCCChHHHHHHHHHHHHHHHHHhhcccccc
Q 020119 220 GAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGN 263 (331)
Q Consensus 220 GsG~H~H~Sl~~~~~~~g~n~~~~~i~gl~L~h~~al~a~~~NS 263 (331)
=+|+|||+.+-+ .. -+-.-+.-+ +.+.|.++|+++||
T Consensus 210 t~g~QVhvd~~s-----ee-d~v~~~~~~-~~l~Pvl~ALfANS 246 (482)
T PLN02611 210 TCTVQVNLDFSS-----EQ-DMVRKFRVG-LALQPIATALFANS 246 (482)
T ss_pred eEEEEEEecCCC-----HH-HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 578999998865 11 111223344 77788888888755
No 18
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=93.97 E-value=0.012 Score=56.95 Aligned_cols=70 Identities=11% Similarity=-0.097 Sum_probs=54.2
Q ss_pred HHHHHHhhcccc---cccccCCCCCCCCCCCceeeccCCCcceeEecccCCCCCccEEEecCCCCCCCHHHHHHHHHHHh
Q 020119 250 LRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT 326 (331)
Q Consensus 250 L~h~~al~a~~~---NSYkRl~p~~~ap~~~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAg 326 (331)
+.|..++.+... ++|+|.....+.| +||.+|+..+.+ +. ......++...-+++|||+.++.+.+|+
T Consensus 270 ~~~g~~~i~~a~~~ls~rh~~hi~~ydp-----~~G~dN~rrltg-~h----Et~~i~~Fs~GvAnr~~siri~r~va~~ 339 (380)
T KOG0683|consen 270 EAGGLKIIEEAIPKLSKRHREHIAAYDP-----KGGKDNERRLTG-RH----ETGSIDNFSWGVANRNPSIRIPRTVAAE 339 (380)
T ss_pred hccCHHHHHHHhhhcchhhhhhhhhcCc-----cCCccchhhhcC-CC----ccccccccccccccCCceeeechhhhcc
Confidence 445455555544 8899998877655 899999999988 32 2345777777778899999999999999
Q ss_pred hcC
Q 020119 327 ILW 329 (331)
Q Consensus 327 l~g 329 (331)
.+|
T Consensus 340 ~~G 342 (380)
T KOG0683|consen 340 GKG 342 (380)
T ss_pred ccc
Confidence 998
No 19
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=88.88 E-value=5.6 Score=40.30 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.5
Q ss_pred cCCcceEeeeeeEEEecCCC
Q 020119 120 VAEEPWYGIEQEYTLLQKDV 139 (331)
Q Consensus 120 ~G~~~~~g~E~EF~l~~~~~ 139 (331)
-+-...+|.|+|-|.|+.++
T Consensus 18 ~~~~~~iG~E~E~f~~~~~~ 37 (446)
T TIGR01436 18 PKEQWRIGTEHEKFGFEKNT 37 (446)
T ss_pred cCCCCceEeeeeeeeeecCC
Confidence 35578999999999998755
No 20
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=78.05 E-value=2.5 Score=41.88 Aligned_cols=137 Identities=11% Similarity=-0.048 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCc-ee--eeecCCCCc-h-H---------HHHHHcCCeeeecccccCCCCCCceeeeeeccccccc
Q 020119 169 RDIVDSHYKACLYAGI-NI--SGINGEVMP-G-Q---------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN 234 (331)
Q Consensus 169 ~~i~~~l~~~l~~~Gi-~v--e~~h~E~gp-G-Q---------~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~ 234 (331)
......+.+++...|. .+ .+.|+=.++ . | ++..+ .|--| ..=+|+|||+.+-+
T Consensus 59 ~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~-----~~~~~-----~~i~G~HVHVgv~d--- 125 (376)
T TIGR02048 59 LRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQ-----TYGTQ-----VVTASVHINIGIPD--- 125 (376)
T ss_pred HHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHH-----Hhhhh-----heeeEEEEEcCCCC---
Confidence 4445567777888887 32 334443333 1 2 44333 11112 24579999999965
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhccccc------------ccccCC----CCCCCCCCCceeeccCCC-------cceeE
Q 020119 235 DGGFEVIKKAIEKLGLRHSEHIAAYGEG------------NERRLT----GKHETADINTFKWGVANR-------GASIR 291 (331)
Q Consensus 235 ~~g~n~~~~~i~gl~L~h~~al~a~~~N------------SYkRl~----p~~~ap~~~~~~WG~~NR-------~a~iR 291 (331)
+.. +-..+..| .-++|.|.|+.+| |||-.. |. +.|...+|..-.+ +-.|.
T Consensus 126 --~d~-av~v~n~l-r~~LP~LlALSAsSPf~~G~dTG~aS~R~~~~~~~P~---~pP~f~~~~~y~~~~~~li~~G~i~ 198 (376)
T TIGR02048 126 --PEE-LMRACRLV-RMEAPLFLALSASSPFLDGQVTGYHSTRWQMFPKTPQ---EVPLFTSHAHFIEWTEEQLTLGTMQ 198 (376)
T ss_pred --HHH-HHHHHHHH-HHHHHHHHHHhcCCccccCCCcchhhHHHHHHHhCCC---CCCCcCCHHHHHHHHHHHHHcCCcc
Confidence 222 22455667 7777888877642 333221 33 2236667751110 11111
Q ss_pred eccc-----CCCCC-----ccEEEecCCCCCCCHHH--HHHHHHHH
Q 020119 292 VGRD-----TEKEG-----KGYFEDRRPASNMDPYV--VTSMIAET 325 (331)
Q Consensus 292 vp~~-----~~~~~-----~~riE~R~~da~aNPYL--alAailaA 325 (331)
.... .++.. ...||+|++|...++=- ++||++.|
T Consensus 199 d~~~~wwdvRPs~~~~~~~~~TlEiRV~D~~~~~~~~~aiaalv~a 244 (376)
T TIGR02048 199 NVRHLWSAVRPNGDRRPYDLNRLELRICDLVTDPISLLAITALLEA 244 (376)
T ss_pred ccCeeEEecCCCCCCCcCCCCCEEEEeccCcCCHHHHHHHHHHHHH
Confidence 1100 01112 45799999999877754 45565554
No 21
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=68.51 E-value=4.5 Score=38.27 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCceeee--ecCCCCchH----------HHHHHcCCeeeecccccCCCCCCceeeeeecccccccC
Q 020119 168 GRDIVDSHYKACLYAGINISG--INGEVMPGQ----------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRND 235 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~--~h~E~gpGQ----------~vA~~~Gl~aTFmpKP~~~d~~GsG~H~H~Sl~~~~~~ 235 (331)
..+.+..+.+++++.|+.+-. +|+-..+.. .+.+..+.. + ++..+..-+|+|+|+++-+
T Consensus 63 l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~--g---~~~~~~~~~g~hvhV~v~~---- 133 (288)
T PF04107_consen 63 LRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR--G---VLARRMMTCGAHVHVGVDD---- 133 (288)
T ss_dssp HHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH------SGCCSHHBHEEEEEEEESS----
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh--h---hhhhhhhhcccceEEeCCC----
Confidence 456677777788888887753 333222222 344444431 1 2111345689999999964
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccccc
Q 020119 236 GGFEVIKKAIEKLGLRHSEHIAAYGEG 262 (331)
Q Consensus 236 ~g~n~~~~~i~gl~L~h~~al~a~~~N 262 (331)
+....-..+..+ ...+|.+.|+++|
T Consensus 134 -~~e~~v~~~n~~-~~~~P~llALsAN 158 (288)
T PF04107_consen 134 -GDEAAVRVMNAL-RPWLPVLLALSAN 158 (288)
T ss_dssp -SHHHHHHHHHHH-HTTHHHHHHHH--
T ss_pred -ccHHHHHHHHHH-HHHhHHHHHHHcC
Confidence 222222344555 7778888888753
No 22
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=47.59 E-value=75 Score=24.87 Aligned_cols=32 Identities=3% Similarity=-0.124 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhhcCCcceEeeeeeEEEecC
Q 020119 106 KRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQK 137 (331)
Q Consensus 106 pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l~~~ 137 (331)
|...-+++++.|++.|..+..-.++||++.-+
T Consensus 2 ~~~~n~~vl~~L~~~Gddl~~~r~ieh~~~f~ 33 (104)
T PF06877_consen 2 QIIENREVLEALEEDGDDLSKPRPIEHWFYFE 33 (104)
T ss_dssp HHHHHHHHHHHHHHHT--TTS-EEEEEEEEES
T ss_pred cHHHHHHHHHHHHhcCCCCCCCeEEEEEEEeC
Confidence 34456788999999999999999999988754
No 23
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.47 E-value=37 Score=30.96 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred EEEEEeecCCCCcCCCCh---HHHHHHHHHHHhhcCCcce
Q 020119 89 LVMCDAYTPAGEPIPTNK---RHAAAKIFSHSDVVAEEPW 125 (331)
Q Consensus 89 ~vl~d~~~~~G~P~~~~p---R~~Lk~~l~~l~~~G~~~~ 125 (331)
-+++.+ ++-|+|+..|| |..|+++.++|.++||.+.
T Consensus 167 ~Lfg~l-Wplge~VKLD~TvDR~~lR~q~~rLg~LGY~~d 205 (214)
T PF11679_consen 167 ELFGEL-WPLGEPVKLDPTVDRRRLRQQRARLGQLGYAFD 205 (214)
T ss_pred hhhhhc-ccCCCceeccCccCHHHHHHHHHHHHhcCeeec
Confidence 344433 45678887765 9999999999999998754
No 24
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=31.44 E-value=36 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=20.3
Q ss_pred cCCCcceeEecccCCCCCccEEEecCCCC
Q 020119 283 VANRGASIRVGRDTEKEGKGYFEDRRPAS 311 (331)
Q Consensus 283 ~~NR~a~iRvp~~~~~~~~~riE~R~~da 311 (331)
..|||-+||+|....-++ .++|+++-+.
T Consensus 7 ~snrSQAVRLP~e~~f~~-~~VeI~r~G~ 34 (74)
T COG4456 7 RSNRSQAVRLPKEFRFPE-DRVEIIREGD 34 (74)
T ss_pred ecCCeeeEecchheecCC-cEEEEEEeCC
Confidence 579999999997653333 6888876553
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=31.43 E-value=78 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCceeeeecCCCCc
Q 020119 171 IVDSHYKACLYAGINISGINGEVMP 195 (331)
Q Consensus 171 i~~~l~~~l~~~Gi~ve~~h~E~gp 195 (331)
++.++.+.|.+.|+.+..+..+.-+
T Consensus 12 iv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 12 IVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred HHHHHHHHHHHcCCCeEEeEeeeec
Confidence 5666777778899999888775543
No 26
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=27.94 E-value=3.2e+02 Score=27.07 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred eEEEEEEeecCCCCcCCCChHHHHHH--HHHHHhhcCCcceEeeeeeEEEecCCCCCCCC-CCCCCCCCC-CCCc----c
Q 020119 87 NILVMCDAYTPAGEPIPTNKRHAAAK--IFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLG-WPIGGYPGP-QGPY----Y 158 (331)
Q Consensus 87 ~a~vl~d~~~~~G~P~~~~pR~~Lk~--~l~~l~~~G~~~~~g~E~EF~l~~~~~~~~~g-~~~~~~~~~-~~~~----~ 158 (331)
.-.|+..-+.+.|.|.-.+-|.+++- +...|+++|.. .+|.++-.+-+ ++. .|.+ .|.. -..| +
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~------~r~i~~~DD~D-~lRKvP~~-~p~~~~~~ylg~Pl 94 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKD------VRLIYFSDDMD-PLRKVPPN-VPNPELEKYLGKPL 94 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-E------EEEEEEE-TTS-B-----TT-S-CC-CCCCTTSBT
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCC------EEEEEEeecCC-cccCCCCC-CChHHHHHhcCCcc
Confidence 45667777789999999999999986 33444667766 67777755543 111 0100 1111 1111 1
Q ss_pred ccCc--c--chhhHHHHHHHHHHHHHHcCceeeeec
Q 020119 159 CGVG--A--DKAWGRDIVDSHYKACLYAGINISGIN 190 (331)
Q Consensus 159 ~~~~--~--~~~~~~~i~~~l~~~l~~~Gi~ve~~h 190 (331)
+..+ . ..+|...+...+.+.|+..||++|.+-
T Consensus 95 t~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s 130 (360)
T PF01921_consen 95 TRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFIS 130 (360)
T ss_dssp TTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEE
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEe
Confidence 1111 1 124456666777777799999887664
No 27
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=26.37 E-value=78 Score=31.61 Aligned_cols=90 Identities=9% Similarity=-0.096 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCceeeee--cCCCCchH--HHHHHcCCeeeecc-c--cc-CCCCCCceeeeeecccccccCCChH
Q 020119 168 GRDIVDSHYKACLYAGINISGI--NGEVMPGQ--RITEIAGVVLSFDP-K--PI-QGDWNGAGAHANYSTKSMRNDGGFE 239 (331)
Q Consensus 168 ~~~i~~~l~~~l~~~Gi~ve~~--h~E~gpGQ--~vA~~~Gl~aTFmp-K--P~-~~d~~GsG~H~H~Sl~~~~~~~g~n 239 (331)
....+.++..++++.|+.+-.+ |.-..+ | .=-.++-...-+|+ | +. . +..-+|+|+|++|-.. +...
T Consensus 89 l~~~l~~l~~~a~~~Gl~lva~G~~P~~~~-~~itpk~RY~~M~~~~~~~~G~~G~-~MM~~tasVQV~ld~~---~~e~ 163 (390)
T TIGR03444 89 LAADLAVLRAALAEDGLALVGLGADPLRPP-RRVLPGPRYRAMEQFFATGIGPFGA-LMMCSTASVQVNLDAG---TDPA 163 (390)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccCCCCCc-cCCCchHHHHHHHHHhhhccCchHH-HHhhCceeEEEccCCC---CCHH
Confidence 4666777777888888877544 332111 2 00001111111222 1 11 2 2457899999999541 1122
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 020119 240 VIKKAIEKLGLRHSEHIAAYGEGN 263 (331)
Q Consensus 240 ~~~~~i~gl~L~h~~al~a~~~NS 263 (331)
-|...+.-. ..-.|.++|+++||
T Consensus 164 D~~~k~rva-~aL~PvLlALfANS 186 (390)
T TIGR03444 164 EWAERWRLA-HALGPVLIAAFANS 186 (390)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhCC
Confidence 233222222 23368888887654
No 28
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.41 E-value=2.3e+02 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHhhcCCcceEeeeeeEEE
Q 020119 105 NKRHAAAKIFSHSDVVAEEPWYGIEQEYTL 134 (331)
Q Consensus 105 ~pR~~Lk~~l~~l~~~G~~~~~g~E~EF~l 134 (331)
=||..++.+++.+.. .|+++||.-
T Consensus 34 wPRRT~QDvikAlpg------lgi~l~FvQ 57 (95)
T COG4519 34 WPRRTAQDVIKALPG------LGIVLEFVQ 57 (95)
T ss_pred CchhHHHHHHHhCcC------CCeEEEeee
Confidence 489999999998863 345666643
No 29
>KOG4081 consensus Dynein light chain [Cell motility]
Probab=23.11 E-value=2.4e+02 Score=23.14 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHcCceeeeecCCCCchHHHHHHcCCeeeecccccCCCCCCceeee-eeccccc
Q 020119 167 WGRDIVDSHYKACLYAGINISGINGEVMPGQRITEIAGVVLSFDPKPIQGDWNGAGAHA-NYSTKSM 232 (331)
Q Consensus 167 ~~~~i~~~l~~~l~~~Gi~ve~~h~E~gpGQ~vA~~~Gl~aTFmpKP~~~d~~GsG~H~-H~Sl~~~ 232 (331)
+...+++++...|.++|=+-..+- +.|++.| .+|.|.|. |.+.||.
T Consensus 43 w~~~vVeqil~~LvKl~k~yKyiV---------------tcti~QK-----~~~~G~htAs~c~Wd~ 89 (115)
T KOG4081|consen 43 WTQKVVEQILTALVKLGKPYKYIV---------------TCTIVQK-----SPGAGLHTASSCFWDT 89 (115)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEE---------------EEEEEee-----CCCccceecceeeecc
Confidence 467888889888999988877764 6789988 25889998 8888984
No 30
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=21.84 E-value=1.6e+02 Score=24.02 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHH----HHcCceeeeecCCCCchH-------HHHHHcCCeee-ecccccC
Q 020119 168 GRDIVDSHYKAC----LYAGINISGINGEVMPGQ-------RITEIAGVVLS-FDPKPIQ 215 (331)
Q Consensus 168 ~~~i~~~l~~~l----~~~Gi~ve~~h~E~gpGQ-------~vA~~~Gl~aT-FmpKP~~ 215 (331)
+.++.+.+.+.+ ...++.+++.-.+.-||+ ++++++|+..+ +-||++.
T Consensus 11 RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~~~s~~l~ 70 (138)
T PF01451_consen 11 RSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISGHRSRQLT 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTTSBBCBGG
T ss_pred hHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCcccceecccc
Confidence 355556665555 445777777766644665 77888887766 6566554
No 31
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=21.66 E-value=1.5e+02 Score=25.18 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=28.6
Q ss_pred eEeCCCCCCeEEEEEEeecCCCCcCCC-----ChHHHHHHHHHHHhhcCC
Q 020119 78 FKDPFRRGNNILVMCDAYTPAGEPIPT-----NKRHAAAKIFSHSDVVAE 122 (331)
Q Consensus 78 ~~~Pw~~~~~a~vl~d~~~~~G~P~~~-----~pR~~Lk~~l~~l~~~G~ 122 (331)
..+||.. -..+.|...-.||+|+|. ||+ |.+++.+|++.|.
T Consensus 3 ~rc~~G~--P~Vi~~~P~l~~g~PFPTlfwLtcP~--L~~~isrLE~~G~ 48 (139)
T PF04417_consen 3 ARCPCGF--PQVIRTAPRLVDGKPFPTLFWLTCPY--LVKAISRLEAEGG 48 (139)
T ss_pred ccCCCCC--CeEEEeccCCCCCccCCccHhhcCHH--HHHHHHHHHhcCH
Confidence 3467743 244666665678999875 886 7788999988774
No 32
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=21.52 E-value=5.2e+02 Score=26.88 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred EEEEEEeecCCCCcCCCChHHHHHH-HHHH-HhhcCCcceEeeeeeEEEecCCCC----------------CCCCCCCCC
Q 020119 88 ILVMCDAYTPAGEPIPTNKRHAAAK-IFSH-SDVVAEEPWYGIEQEYTLLQKDVK----------------WPLGWPIGG 149 (331)
Q Consensus 88 a~vl~d~~~~~G~P~~~~pR~~Lk~-~l~~-l~~~G~~~~~g~E~EF~l~~~~~~----------------~~~g~~~~~ 149 (331)
..++..-+.+.|.|.-.+-|.++.- ++.+ |.++|. |..|..+..+-+ ..+|+|.+.
T Consensus 20 ~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~------~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~ 93 (521)
T COG1384 20 EYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGD------EVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTE 93 (521)
T ss_pred cEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCC------ceEEEEEccCCcccccCCCCCCChHHHHHHcCCcccc
Confidence 3455556678999999999999876 3333 366777 667766655533 012223221
Q ss_pred CCCCCCCccccCccchhhHHHHHHHHHHHHHHcCceeeeec
Q 020119 150 YPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190 (331)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~Gi~ve~~h 190 (331)
.|-+.| ++ .++...+...+...|...||++|.+-
T Consensus 94 IPdP~G-~~------~Sya~hf~~~f~~~l~~~Gi~~E~~s 127 (521)
T COG1384 94 IPDPFG-CC------DSYAEHFLRPFEEFLDEFGIEVEFVS 127 (521)
T ss_pred CCCCcc-cc------chHHHHHHHHHHHHHHhcCCceEEEE
Confidence 222222 11 12334444455555699999998874
Done!