RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020119
(331 letters)
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 727 bits (1879), Expect = 0.0
Identities = 310/354 (87%), Positives = 319/354 (90%), Gaps = 25/354 (7%)
Query: 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
MSLLSDL+NLNLS+STDKIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60
Query: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
GQAPGEDSEVILYPQAIFKDPFR GNNILVMCDAYTPAGEPIPTNKR AAKIFSH DV
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120
Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
AEEPWYGIEQEYTLLQKDVKWPLGWP+GGYPGPQGPYYCGVGADKA+GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180
Query: 181 YAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQ 215
YAGINISGINGEVMPGQ RITEIAGVV+SFDPKPI
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240
Query: 216 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 275
GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGNERRLTGKHETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETAD 300
Query: 276 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 329
INTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional.
Length = 432
Score = 610 bits (1573), Expect = 0.0
Identities = 267/353 (75%), Positives = 296/353 (83%), Gaps = 25/353 (7%)
Query: 4 LSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQA 63
+ DLLNL+ + TD+IIAEYIWIGGSG+D+RSK+RT+ PV PS+LPKWNYDGSSTGQA
Sbjct: 64 VEDLLNLDTTPYTDRIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQA 123
Query: 64 PGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEE 123
PGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNKRH AA+IFS+ VV E
Sbjct: 124 PGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEV 183
Query: 124 PWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAG 183
PW+GIEQEYTLLQ++VKWPLGWP+G YPGPQGPYYCG GADK++GRDI D+HYKACLYAG
Sbjct: 184 PWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAG 243
Query: 184 INISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQGDW 218
INISG NGEVMPGQ RITE AGVVL+ DPKPI+GDW
Sbjct: 244 INISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDW 303
Query: 219 NGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINT 278
NGAG H NYSTKSMR +GGFEVIKKAI L LRH EHI+AYGEGNERRLTGKHETA I+T
Sbjct: 304 NGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDT 363
Query: 279 FKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 331
F WGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct: 364 FSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 206 bits (526), Expect = 2e-65
Identities = 81/263 (30%), Positives = 113/263 (42%), Gaps = 45/263 (17%)
Query: 103 PTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVG 162
P + R + + + P++G EQE+ L DV+ G P GGYP P+GPYY G
Sbjct: 1 PRDPRSILKRALARLASLGYTPYFGPEQEFFLF-DDVRPGGGPPPGGYPDPRGPYYGGYF 59
Query: 163 ADKA--WGRDIVDSHYKACLYAGINISGINGEVMPGQ----------------------- 197
RDI KA AGI + GI+ EV PGQ
Sbjct: 60 PVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAADNLQLFKYV 119
Query: 198 --RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRN--------DGGFEVIKKAIEK 247
R+ E G+ +F PKPI GD NG+G H + S ++ DG + + A
Sbjct: 120 VKRVAEKHGLTATFMPKPIFGD-NGSGMHTHQSLWDRKDGKNLFADGDGYAGLSETARHF 178
Query: 248 LG--LRHSEHIAAY---GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKG 302
+G L+H+ I AY + +RL T WGV NR ASIR+ R + G
Sbjct: 179 IGGILKHAPAITAYTAPTVNSYKRLVP--GTEAPVYIAWGVRNRSASIRIPRGGGPKA-G 235
Query: 303 YFEDRRPASNMDPYVVTSMIAET 325
EDR P + +PY+ + +
Sbjct: 236 RVEDRLPDPDANPYLALAALLAA 258
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 176 bits (449), Expect = 9e-52
Identities = 85/350 (24%), Positives = 123/350 (35%), Gaps = 48/350 (13%)
Query: 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNY--DGSSTGQAPG-EDSEVILY 73
+ + +G+ +R K PVS ++L + DGSS G +S+++L
Sbjct: 14 GVKFVDLRFTDLNGV-LRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAGFEGIGESDMVLK 72
Query: 74 P--QAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQ 130
P + DP+R G V+CD Y P G P P + R + D G E
Sbjct: 73 PDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKDEGLAPAVVGPEL 132
Query: 131 EYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGIN 190
E+ L +D G P +G Y+ D+A D +A AGI I I+
Sbjct: 133 EFFLFDRD-GRDPDG---GRPADKGGYFDVAPLDEA--EDFRRDIVEALEAAGIEIEAIH 186
Query: 191 GEVMPGQR----------------------ITEIA---GVVLSFDPKPIQGD-WNGAGAH 224
EV PGQ + E+A G+ +F PKP GD +G H
Sbjct: 187 HEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFGDNGSGMHVH 246
Query: 225 ANYSTKS-----MRNDGGF---EVIKKAIEKLGLRHSEHIAAYGEG-NERRLTGKHETAD 275
+ K DG E I + A N + G
Sbjct: 247 QSLWDKDGGNLFADEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWA 306
Query: 276 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 325
WGV NR AS+R+ E R P + +PY+ + I
Sbjct: 307 PTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPYLAFAAILAA 356
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 75.6 bits (187), Expect = 2e-17
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 17 DKIIAEYIWIGGSGM--DMRSKARTLPGPVSDPSKLPKWNYDGSST-GQAPGEDSEVILY 73
+ + G +R A L D + +DGSS G AP +S++ L
Sbjct: 1 GVKFVDLRFTDILGRLKHVRIPATELDE---DAFEEG-IGFDGSSIEGFAPINESDMYLK 56
Query: 74 P--QAIFKDPFRR--GNNILVMCDAYTP 97
P + DPFR G V+CD Y P
Sbjct: 57 PDPSTAYIDPFRPDPGKTARVICDVYDP 84
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 59.3 bits (144), Expect = 7e-10
Identities = 74/320 (23%), Positives = 119/320 (37%), Gaps = 64/320 (20%)
Query: 55 YDGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRHAA 110
+DGSS G E+S+++L P DP+R + V+CD Y P GEP + R A
Sbjct: 47 FDGSSIRGFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVICDVYEPFTGEPYERDPRSIA 106
Query: 111 AKIFSH-SDVVAEEPWYGIEQEYTLLQKDVKWPLGW-----------------PIGGY-P 151
+ + + + ++G E E+ L L GY P
Sbjct: 107 KRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNRGYKP 166
Query: 152 GPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQ-------------- 197
+G Y+ D A DI G ++ + EV GQ
Sbjct: 167 RDKGGYFPVAPTDTA--VDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTA 224
Query: 198 -----------RITEIAGVVLSFDPKPIQGDWNGAGAHANYS-----TKSMRNDGGFEVI 241
+ G +F PKP+ GD NG+G H + S + +
Sbjct: 225 DDIQTYKYVVKNVARKHGKTATFMPKPLFGD-NGSGMHCHQSLWKDGENLFAGEEYAGLS 283
Query: 242 KKAIEKLG--LRHSEHIAAYGE---GNERRLTGKHETADINTFKWGVANRGASIRVGRDT 296
+ A+ +G L+H++ +AA+ + +RL +E A + + NR A IR+
Sbjct: 284 ETALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYE-APVY-LAYSARNRSALIRIPASG 341
Query: 297 EKEGKGYFEDRRPASNMDPY 316
+ K E R P + +PY
Sbjct: 342 NPKAK-RIEFRFPDPSANPY 360
>gnl|CDD|201802 pfam01451, LMWPc, Low molecular weight phosphotyrosine protein
phosphatase.
Length = 138
Score = 29.2 bits (66), Expect = 1.5
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 72 LYPQAIFKDPFRRGNNILVMCDAYTPAGEPI-PTNKRHAAAKIFSHSDVVAEEPWYGIEQ 130
+ + ++ + + IL M + PI P +R + H D+ +P+ G
Sbjct: 64 HRARQLTEELLKSFDLILTMDGEHIRDICPIAPGGRRAKVMLLGHHWDI--PDPYGGSID 121
Query: 131 EY 132
+
Sbjct: 122 AF 123
>gnl|CDD|233049 TIGR00608, radc, DNA repair protein radc. The genes in this family
for which the functions are known have an as yet porrly
defined role in determining sensitivity to DNA damaging
agents such as UV irradiation. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 218
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 62 QAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTN 105
G + V ++P+ IFK+ + + L++ + P+GEP P+
Sbjct: 136 VFIGTVNHVPVHPREIFKEALKLSASALILAHNH-PSGEPSPSQ 178
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 29.3 bits (66), Expect = 3.0
Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 27/143 (18%)
Query: 199 ITEIAGVVLSFDPKPIQGDWNGAGAHANYS--TKSMRN-------DGGFEVIKKAIEKLG 249
I E G+ +F PKP D G G H + S + RN G + K A +G
Sbjct: 212 IAEKHGMRATFMPKPFA-DLTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIG 270
Query: 250 --LRHSEHIAA--------YGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKE 299
L H+ + A Y N R T T N +G NR +R+
Sbjct: 271 GILHHAPALCAVLAPTVNSYKRLNAPR-TTSGATWAPNFISYGGNNRTHMVRI------P 323
Query: 300 GKGYFEDRRPASNMDPYVVTSMI 322
G FE R +PY+ + I
Sbjct: 324 DPGRFELRLADGAANPYLAQAAI 346
>gnl|CDD|219567 pfam07775, PaRep2b, PaRep2b protein. This is a family of proteins,
expressed in the crenarchaeon Pyrobaculum aerophilum,
whose members are variable in length and level of
conservation. The presence of numerous frameshifts and
internal stop codons in multiple alignments are thought
to indicate that most family members are no longer
functional.
Length = 510
Score = 29.1 bits (65), Expect = 4.0
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 239 EVIKKAIEKL-GLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTE 297
E KA+E L GL+ EH A YG+ E R+ H+ A +N K A + G+
Sbjct: 257 EAYAKAVEALSGLKEGEHYAVYGKRREIRVKAPHKDAVVNALK------AAGLEEGKHFA 310
Query: 298 KEGKGYFEDR 307
+ GY+ R
Sbjct: 311 VKWSGYYVIR 320
>gnl|CDD|222587 pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid
hydrolase. This family of enzymes catalyzes the
conversion of L-2-amino-delta2-thiazoline-4-carboxylic
acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the
carbon-sulphur bond in the ring structure of L-ATC to
produce N-carbamoyl-L-cysteine.
Length = 149
Score = 27.3 bits (61), Expect = 8.0
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 234 NDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRL 267
+ +I++AIE G + AA G L
Sbjct: 28 PEEAEAIIREAIEAFGEERGKAFAAKAPGKPDDL 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.136 0.425
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,218,849
Number of extensions: 1663585
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 15
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.5 bits)