RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020119
(331 letters)
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 533 bits (1376), Expect = 0.0
Identities = 289/356 (81%), Positives = 316/356 (88%), Gaps = 25/356 (7%)
Query: 1 MSLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSST 60
M+ L+DL+NLNLS++T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSST
Sbjct: 1 MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60
Query: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVV 120
GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS +V
Sbjct: 61 GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120
Query: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACL 180
AEEPWYGIEQEYTLLQKD WPLGWPIGG+PGPQGPYYCG+GA+K++GRDIVD+HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180
Query: 181 YAGINISGINGEVMPGQ-------------------------RITEIAGVVLSFDPKPIQ 215
YAGINISGINGEVMPGQ RITEIAGVV++FDPKPI
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240
Query: 216 GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETAD 275
GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETAD 300
Query: 276 INTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 331
INTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 301 INTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
GENO structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 493 bits (1272), Expect = e-177
Identities = 170/343 (49%), Positives = 220/343 (64%), Gaps = 32/343 (9%)
Query: 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
+K+ A YIWI G+G +R K RTL +LP+WN+DGSST Q+ G +S++ L P A
Sbjct: 43 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAA 102
Query: 77 IFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ 136
+F+DPFR+ N LV+C+ + P TN RH +I + PW+G+EQEYTL+
Sbjct: 103 MFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMG 160
Query: 137 KDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 196
D P GWP G+PGPQGPYYCGVGAD+A+GRDIV++HY+ACLYAG+ I+G N EVMP
Sbjct: 161 TD-GHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPA 219
Query: 197 Q-------------------------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS 231
Q R+ E GV+ +FDPKPI G+WNGAG H N+STK+
Sbjct: 220 QWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKA 279
Query: 232 MRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRG 287
MR + G + I++AIEKL RH HI AY G N RRLTG HET++IN F GVANR
Sbjct: 280 MREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRS 339
Query: 288 ASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 330
ASIR+ R +E KGYFEDRRP++N DP+ VT + T +L +
Sbjct: 340 ASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 479 bits (1235), Expect = e-171
Identities = 180/336 (53%), Positives = 225/336 (66%), Gaps = 29/336 (8%)
Query: 17 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
+IIAEY+WI G+G ++RSK RTL ++ +LP+WN+DGSST QAPG DS++ L P A
Sbjct: 22 GRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVA 80
Query: 77 IFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ 136
+ DPFRRG+NI+V+ Y G P N RH AAK+F+ EE W+G+EQEYTL
Sbjct: 81 YYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAA--HKDEEIWFGLEQEYTLFD 138
Query: 137 KDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 196
GWP GGYP PQGPYYCGVGA K + RD++++HY+ACLYAG+ ISGIN EVMP
Sbjct: 139 MY-DDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPS 197
Query: 197 Q-------------------------RITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKS 231
Q R+ E G+ +SF PKP++GDWNGAG HAN STK
Sbjct: 198 QWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKE 257
Query: 232 MRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIR 291
MR GG + I++AIEKL RH+EHI YG N+ RLTG+HETA + F GVANRG+SIR
Sbjct: 258 MRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIR 317
Query: 292 VGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 327
+ R KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct: 318 IPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVC 353
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 50.2 bits (121), Expect = 4e-07
Identities = 42/315 (13%), Positives = 76/315 (24%), Gaps = 88/315 (27%)
Query: 56 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTP-AGEPIPTNKRHAAA 111
DG G A S+++L P+ V+CD A P R+ A
Sbjct: 50 DGEVNAGAAGAAASDIVLMPELSTAAVAAAAAAATAAVICDGGAAAAASP-----RYIAR 104
Query: 112 KIFSH------SDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADK 165
+ + + ++ + + + +
Sbjct: 105 AALAQLQAAGAAAGLLSAF----IADFCIF-GVPEVIN---------SKTISFPASTTAA 150
Query: 166 AWG--RDIVDSHYKACLYA-GINISGINGEVMPGQR-----------------------I 199
A ++ A G G G +
Sbjct: 151 AADQPQEAAA------GGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGL 204
Query: 200 TEIA---GVVLSFDPKPIQGDWNGAGAHANYS-TKSMRN----DGGFEVIKKAIEKLG-- 249
E+A + S GAG+H+ + + N G + L
Sbjct: 205 QEVARRYNAIASAAAAAAAAA-AGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGL 263
Query: 250 LRHSEHIAA--------YGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGK 301
L + AA A T WG A ++ + +G
Sbjct: 264 LAAAAAAAAAAAAAAAAA-----AAAAAGAA-AAAAT-AWGAAAAACALNIAAAAAAKGA 316
Query: 302 GYFEDRRPASNMDPY 316
E++ A+ +PY
Sbjct: 317 -QIENKAGAAAANPY 330
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 44.8 bits (107), Expect = 2e-05
Identities = 72/291 (24%), Positives = 106/291 (36%), Gaps = 75/291 (25%)
Query: 56 DGSS-TGQAPGEDSEVILYPQA--IFKDPFR--RGNNILVMCDAYTPAGEPIPTNKRHAA 110
DGSS G E+S++ LYP P+ +G +CD Y P G P + R+
Sbjct: 53 DGSSIEGFVRIEESDMYLYPDLNTFVIFPWTAEKGKVARFICDIYNPDGTPFEGDPRNNL 112
Query: 111 AKIFSHSDVVAEEPWY-----GIEQEYTLLQKDVKWPLGWPI---GGYPGPQGPYYCGVG 162
+I E+ + G E E+ L + D K + GGY P +G
Sbjct: 113 KRILKE----MEDLGFSDFNLGPEPEFFLFKLDEKGEPTLELNDKGGY-FDLAPT--DLG 165
Query: 163 ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQR----------------------IT 200
+ RDIV G I + EV PGQ +
Sbjct: 166 EN--CRRDIV----LELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVK 219
Query: 201 EIA---GVVLSFDPKPIQGDWNGAGAHANYS-TKSMRN-----DGGFEVIKKAIEKLG-- 249
IA G+ +F PKP+ G NG+G H N S K+ N + ++ + A +
Sbjct: 220 TIARKHGLHATFMPKPLFGV-NGSGMHCNLSLFKNGVNAFFDENADLQLSETAKHFIAGI 278
Query: 250 LRHSEHIAA--------YGEGNERRLTGKHETADINTFKWGVANRGASIRV 292
++H+ A Y +RL +E A W NR IR+
Sbjct: 279 VKHATSFTAVTNPTVNSY-----KRLVPGYE-APCY-VAWSAQNRSPLIRI 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.007
Identities = 56/391 (14%), Positives = 101/391 (25%), Gaps = 145/391 (37%)
Query: 2 SLLSDLLN------LNLSESTDKIIAEYIWIGGSGMDMRS---KARTLPG-------PVS 45
L+ DL+ L +T + G+++ P P+S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 46 DP----SKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEP 101
P +L + G PGE + + T +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGE-----------LRSYLK----------GATGHSQG 276
Query: 102 IPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIG------------- 148
+ A + +D W E + ++K + L + IG
Sbjct: 277 LV------TAVAIAETD-----SW---ESFFVSVRKAITV-LFF-IGVRCYEAYPNTSLP 320
Query: 149 ------------GYPGPQGPYYCGV-GADKAWGRDIVDSHYKAC---LYAG--INISGIN 190
G P P + ++ V + L AG + IS +N
Sbjct: 321 PSILEDSLENNEGVPSPM----LSISNLT----QEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 191 GEVMPGQRITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG-------FEVIKK 243
G + ++G P+ + G N + + + G F K
Sbjct: 373 G---AKNLV--VSG-----PPQSLYG--------LNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 244 AIEKLGLR-----HSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEK 298
L HS + + + L + + + + I V DT
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ---------IPV-YDTF- 463
Query: 299 EGKGYFEDRRPASNMDPYVVTSMIAETTILW 329
+G D R S + I + W
Sbjct: 464 DGS----DLRVLSGSISERIVDCIIRLPVKW 490
Score = 32.7 bits (74), Expect = 0.18
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 62 QAPGEDSEVILYPQAIFKDPFRRGNNI--LVMCDAYTPAGEPIPTNKRHAAAKIFSHSDV 119
G+ +V+ F++ + GN+I L A K K + + +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AKLLQENDTTLVKTKELIKNYITARI 131
Query: 120 VAEEP 124
+A+ P
Sbjct: 132 MAKRP 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.011
Identities = 51/317 (16%), Positives = 92/317 (29%), Gaps = 109/317 (34%)
Query: 2 SLLSDLLNLNLSESTDKIIAEYIWIGGSGMDMRSKA-RTLPGPVS--------DPSKLPK 52
SL + L E ++ + ++ D+ + T P +S +
Sbjct: 290 SLDHHSMTLTPDEVKS-LLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 53 WNY----------DGSSTGQAPGEDSEVILYPQ-AIFKDPFRRGNNILVMCDAYTPAGEP 101
W + + S P E + ++ + ++F P
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVF------------------PPSAH 386
Query: 102 IPTNKRHAAAKIFSHSDVVAEEPWYGIEQE-----------YTLLQKDVKWPLGWPIGGY 150
IPT + W+ + + Y+L++K K
Sbjct: 387 IPTI--------------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----SI 428
Query: 151 PGPQGPYYCGVGADKAWGRDIVDSHYKA------------------CLYAGINISGINGE 192
P + + A R IVD HY + G ++ I
Sbjct: 429 PSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-- 485
Query: 193 VMPGQRITEIAGVVLSF---DPKPIQGD---WNGAGAHAN-------YSTKSMRNDGGFE 239
+R+T V L F + K I+ D WN +G+ N Y ND +E
Sbjct: 486 --HPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 240 VIKKAIEKLGLRHSEHI 256
+ AI + E++
Sbjct: 543 RLVNAILDFLPKIEENL 559
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 33.7 bits (78), Expect = 0.072
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 56 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRHAAA 111
DGSS G +S+++L P DPFR + + + P EP + R+ A
Sbjct: 62 DGSSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIAR 121
Query: 112 KIFSH--SDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGY 150
K ++ S +A+ ++G E E+ + V + Y
Sbjct: 122 KAENYLISTGIADTAYFGAEAEFYIF-DSVSFDSRANGSFY 161
Score = 30.3 bits (69), Expect = 0.85
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 24/129 (18%)
Query: 204 GVVLSFDPKPIQGDWNGAGAHANYS-TKSMRN-----DGGFEVIKKAIEKLG--LRHSEH 255
G ++F PKP+ GD NG+G H + S K G + A +G L H+
Sbjct: 265 GKTVTFMPKPLFGD-NGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPS 323
Query: 256 IAA--------YGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDR 307
+ A Y +RL +E A IN + NR A +R+ E R
Sbjct: 324 LLAFTNPTVNSY-----KRLVPGYE-APIN-LVYSQRNRSACVRIPITGSNPKAKRLEFR 376
Query: 308 RPASNMDPY 316
P S+ +PY
Sbjct: 377 SPDSSGNPY 385
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 33.2 bits (77), Expect = 0.076
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
+A+Y TK +GG E I +EK G
Sbjct: 203 ENADYVTKKEYGEGGAEAIYHILEKFGY 230
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 33.7 bits (78), Expect = 0.082
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 56 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEPIPTNKRHAAA 111
DGSS G +S++ + P DPF + + ++C P GE + R AA
Sbjct: 53 DGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTIAA 112
Query: 112 KIFSH--SDVVAEEPWYGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGR 169
K + +A+ ++G E E+ L D+++ YY + W
Sbjct: 113 KAAEYLRGTGIADTVYFGPEAEFFLF-DDIRF--------GQTENSSYYFADSVEGRWNT 163
Query: 170 DIVD 173
+
Sbjct: 164 GREE 167
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 33.3 bits (77), Expect = 0.099
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 56 DGSS-TGQAPGEDSEVILYPQA--IFKDPFRRGNNILVMCDAYTPA-GEP 101
DGSS G +S+++L P A DPF + +++ CD P +
Sbjct: 50 DGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQG 99
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.20
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 14/96 (14%)
Query: 235 DGGFEVIKKAI-EKLGLRHSEH--IAAYGEGNERRLTGKHETA----DINTFKWGVANRG 287
D K E+ +H + I E E + F VA
Sbjct: 931 DLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVA--- 987
Query: 288 ASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA 323
I G + + Y S +DP + +++
Sbjct: 988 GQIPTGWNAKT----YGISDDIISQVDPITLFVLVS 1019
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 29.4 bits (67), Expect = 1.4
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
A++ TK + +G I +++L L
Sbjct: 233 RVADFVTKPVDKEG----IWYGLKQLQL 256
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 29.5 bits (67), Expect = 1.6
Identities = 4/28 (14%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
A + + ++G I K +++ +
Sbjct: 250 DIATSICEDIFDNG----IYKELKRRNI 273
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 29.0 bits (66), Expect = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
A A+Y T + DG I KA++ G+
Sbjct: 237 AAADYVTAPIDEDG----ISKAMKHFGI 260
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 29.0 bits (66), Expect = 1.8
Identities = 3/28 (10%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
A +++ + + I + + L
Sbjct: 203 AVSDFVSDYSYGEE----IGQIFKHFEL 226
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 29.0 bits (66), Expect = 2.1
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
+ A++ T ++ N G + KA++ G+
Sbjct: 244 SVADFVTDTVDNSG----LYKALKHFGV 267
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP:
d.68.7.1
Length = 86
Score = 27.2 bits (60), Expect = 2.4
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 246 EKLGLRHSEHIAAYGEGNERRLT 268
E+ GLRH + GEG R +T
Sbjct: 55 EEHGLRHD----SSGEGKRRFIT 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.425
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,336,083
Number of extensions: 332258
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 26
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.3 bits)