RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 020119
         (331 letters)



>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 33.7 bits (76), Expect = 0.026
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 171 IVDSHYKACLYAGINISGINGEVMPGQRITEIAGVVLSFDPKPIQGDWNGAGAH------ 224
            ++  + + L+A  ++      +          G  ++F PKP+ GD             
Sbjct: 123 EINYQFNSLLHAADDMQLYKYIIK---NTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWK 179

Query: 225 --ANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAA---YGEGNERRLTGKHETADINTF 279
             A          G  +  +  I  L L H+  + A       + +RL      A IN  
Sbjct: 180 DGAPLMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL- 236

Query: 280 KWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 322
            +   NR A +R+            E R P S+ +PY+  S +
Sbjct: 237 VYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279


>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 100

 Score = 29.1 bits (65), Expect = 0.22
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 31  MDMRSKARTLPGPVSDPSKLPKWNYDG------SSTGQAPGEDSEVILYPQA--IFKDPF 82
            D + K + +  P        ++  +G      S  G     +S+++L P A     DPF
Sbjct: 22  TDTKGKEQHVTIPAHQV--NAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPF 79

Query: 83  RRGNNILVMCDAYTPA-GEP 101
              + +++ CD   P   + 
Sbjct: 80  FADSTLIIRCDILEPGTLQG 99


>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 230

 Score = 30.4 bits (67), Expect = 0.27
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
            +A+Y TK    +GG E I   +EK G 
Sbjct: 202 ENADYVTKKEYGEGGAEAIYHILEKFGY 229


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 27.2 bits (60), Expect = 0.92
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 31  MDMRSKARTLPGPVS----DPSKLPKWNYDGSSTGQAPGEDSEVILYPQA--IFKDPFRR 84
            D+    +    P S                S  G     +S+++L P       DPFR 
Sbjct: 22  CDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPFRA 81

Query: 85  GNNILVMCDAYTPA-GEP 101
              + +    + P   EP
Sbjct: 82  AKTLNINFFVHDPFTLEP 99


>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 260

 Score = 26.4 bits (57), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 223 AHANYSTKSMRNDGGFEVIKKAIEKLGL 250
           A A+Y T  +  DG    I KA++  G+
Sbjct: 236 AAADYVTAPIDEDG----ISKAMKHFGI 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,673
Number of extensions: 63395
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)