Query 020120
Match_columns 331
No_of_seqs 145 out of 1931
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.6E-55 1.2E-59 392.4 25.8 277 36-318 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8.2E-56 2.8E-60 397.6 21.3 273 41-321 4-289 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.5E-36 1.2E-40 269.1 19.2 192 130-321 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 8.7E-35 3E-39 260.8 17.2 183 135-322 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 39.9 23 0.0008 23.9 2.9 39 285-323 33-71 (81)
6 1pp9_G Ubiquinol-cytochrome C 28.4 45 0.0015 22.5 2.8 40 284-323 32-71 (81)
7 3cx5_H Cytochrome B-C1 complex 24.5 63 0.0022 22.4 3.1 40 283-322 41-80 (93)
8 3f2e_A SIRV coat protein; four 23.7 30 0.001 22.9 1.2 34 268-301 6-43 (100)
9 3tgu_G UQCRQ, mitochondrial ub 20.8 92 0.0031 21.0 3.2 37 184-220 34-70 (81)
10 2bnk_A Early protein GP16.7; D 17.6 91 0.0031 19.4 2.4 47 54-100 20-66 (67)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.6e-55 Score=392.43 Aligned_cols=277 Identities=20% Similarity=0.322 Sum_probs=240.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCCCC-----CCCCCCHHHHHHHHHHhhCccccccchhhhhhcchhhH
Q 020120 36 LRYWQFMIAGSIAGSVEHMAMFPVDTVKTHMQAIGSC-----PIKSVGVRQALKSILKTEGPSGLYRGIGAMGLGAGPAH 110 (331)
Q Consensus 36 ~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~Q~~~~~-----~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~ 110 (331)
++.+..+++|++||+++.++++|+|++|+|+|++... ...+.+.++++++++++||++|||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 4568899999999999999999999999999998632 23578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhC-CCC-C----chHHHHHHHHHHHHHhhhhhchHHHHHHHHhcCC-----CCCCCcHHHHHHHHH
Q 020120 111 AVYFSIYEVSKKFLSA-GNP-N----NAVAHAISGVFATVASDAVFTPMDMVKQRLQLGE-----NSTYKGVWDCVKRVL 179 (331)
Q Consensus 111 ~~~~~~~~~~~~~~~~-~~~-~----~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~-----~~~~~~~~~~~~~i~ 179 (331)
.++|.+||.+++.+.+ ... . .....+++|++||+++.++++|+|+||+|+|++. ...|.+.++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999985432 221 1 2356889999999999999999999999999873 246899999999999
Q ss_pred HhhCccccccchhhhHHhHhhhhhHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhHhhhcccHHHHHHHHHh
Q 020120 180 REEGLGAFYASYRTTVLMNAPFTAVHFATYEATKRGLMEISPESASDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQC 259 (331)
Q Consensus 180 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~P~d~ik~r~q~ 259 (331)
++||++|||||+.+++++.+++.+++|.+||.+++.+.+.. +......+++|+++|++++++++|+|+||+|||.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 99999999999999999999999999999999999764321 2345667899999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCccccccccHHHHHhHhhhhHHHHHHHHHHHHHH
Q 020120 260 QGVCGCDRFQSSSIGHVIQTIIKKDGYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFF 318 (331)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (331)
+.........|.+++||+++|+++||++|||||+.++++|. +..+++|.+||.+|+++
T Consensus 240 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 240 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 86433234578999999999999999999999999999996 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.2e-56 Score=397.58 Aligned_cols=273 Identities=26% Similarity=0.413 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHhcCCCC--------CCCCCCHHHHHHHHHHhhCccccccchhhhhhcchhhHHH
Q 020120 41 FMIAGSIAGSVEHMAMFPVDTVKTHMQAIGSC--------PIKSVGVRQALKSILKTEGPSGLYRGIGAMGLGAGPAHAV 112 (331)
Q Consensus 41 ~~~~g~~a~~~~~~i~~Pld~vk~~~Q~~~~~--------~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~l~~~~~~~~~ 112 (331)
.+++|++||+++.++++|||++|+|+|++... ...+.+.++++++++++||+++||||+.+.+++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999998653 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCC-CCCchHHHHHHHHHHHHHhhhhhchHHHHHHHHhcCCC----CCCCcHHHHHHHHHHhhCcccc
Q 020120 113 YFSIYEVSKKFLSAG-NPNNAVAHAISGVFATVASDAVFTPMDMVKQRLQLGEN----STYKGVWDCVKRVLREEGLGAF 187 (331)
Q Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~----~~~~~~~~~~~~i~~~~G~~gl 187 (331)
+|.+||.+++.+.+. ...+....+++|++||+++.++++|+|+||+|+|++.. ..|.+.++++++|++++|++||
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl 163 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhh
Confidence 999999999988764 34567889999999999999999999999999998743 3789999999999999999999
Q ss_pred ccchhhhHHhHhhhhhHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCCCC
Q 020120 188 YASYRTTVLMNAPFTAVHFATYEATKRGLMEISPESASDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDR 267 (331)
Q Consensus 188 y~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~P~d~ik~r~q~~~~~~~~~ 267 (331)
|||+.+++++.+++.+++|.+||.+++.+.+... ........+++|+++|++++++++|+|+||+|||.+..
T Consensus 164 yrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----- 235 (303)
T 2lck_A 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----- 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-----
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-----
Confidence 9999999999999999999999999998865432 23345678999999999999999999999999999853
Q ss_pred CCCCCHHHHHHHHHHHhCccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhh
Q 020120 268 FQSSSIGHVIQTIIKKDGYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEV 321 (331)
Q Consensus 268 ~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (331)
..|.++++|+++|+++||++|||||+.++++|.+|..+++|.+||.+|+++...
T Consensus 236 ~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 236 GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999999999999999999877543
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.5e-36 Score=269.12 Aligned_cols=192 Identities=25% Similarity=0.368 Sum_probs=167.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhchHHHHHHHHhcCCC-------CCCCcHHHHHHHHHHhhCccccccchhhhHHhHhhhh
Q 020120 130 NNAVAHAISGVFATVASDAVFTPMDMVKQRLQLGEN-------STYKGVWDCVKRVLREEGLGAFYASYRTTVLMNAPFT 202 (331)
Q Consensus 130 ~~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~-------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 202 (331)
.+....+++|++||+++.++++|+|+||+|+|++.. ..|.+.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999998642 3688999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCC-CCCCchhhHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 020120 203 AVHFATYEATKRGLMEISP-ESASDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFQSSSIGHVIQTII 281 (331)
Q Consensus 203 ~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~a~~~~~~~t~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~ 281 (331)
+++|.+||.+++.+.+... +..........+++|+++|++++++++|+|+||+|||.+.........|.+.++|+++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996533222 111113456789999999999999999999999999998643333457899999999999
Q ss_pred HHhCccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhh
Q 020120 282 KKDGYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEV 321 (331)
Q Consensus 282 ~~~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (331)
++||++|||||+.++++|.+|..++.|.+||.+|+++.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999987543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.7e-35 Score=260.77 Aligned_cols=183 Identities=27% Similarity=0.386 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHhcCCC----------CCCCcHHHHHHHHHHhhCccccccchhhhHHhHhhhhhH
Q 020120 135 HAISGVFATVASDAVFTPMDMVKQRLQLGEN----------STYKGVWDCVKRVLREEGLGAFYASYRTTVLMNAPFTAV 204 (331)
Q Consensus 135 ~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~----------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 204 (331)
.+++|++||+++.++++|+|+||+|+|++.. ..|.+.++++++|+++||+++||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999998743 368999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh
Q 020120 205 HFATYEATKRGLMEISPESASDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFQSSSIGHVIQTIIKKD 284 (331)
Q Consensus 205 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~i~~~~ 284 (331)
+|.+||.+++.+.+..+ .......+++|+++|++++++++|+|+||+|||.+.... ....|.+.++|+++|+++|
T Consensus 84 ~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG-GGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp TTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-CSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-CCCCCCCHHHHHHHHHHhc
Confidence 99999999998865321 245677899999999999999999999999999986431 2347899999999999999
Q ss_pred CccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhhh
Q 020120 285 GYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEVN 322 (331)
Q Consensus 285 G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (331)
|++|||||+.++++|.+|..++.|.+||.+|+.+.+..
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887544
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=39.89 E-value=23 Score=23.93 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=31.0
Q ss_pred CccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhhhC
Q 020120 285 GYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEVND 323 (331)
Q Consensus 285 G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (331)
|+...+|-+...++..+|..++.+.+|+..++..+....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 555566666778888999999999999999988765544
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=28.38 E-value=45 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=32.1
Q ss_pred hCccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhhhC
Q 020120 284 DGYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEVND 323 (331)
Q Consensus 284 ~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (331)
.|+...+|-+.-+.+..+|..++.+.+|+..++..+....
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~r 71 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhC
Confidence 4566677777788889999999999999999988765544
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=24.54 E-value=63 Score=22.41 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=33.2
Q ss_pred HhCccccccccHHHHHhHhhhhHHHHHHHHHHHHHHHhhh
Q 020120 283 KDGYRGLIRGWMPRMLFHAPAAAICWSTYEACKSFFEEVN 322 (331)
Q Consensus 283 ~~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (331)
.+|+...+|-+.-+.+..+|...+.+.+|+..++..+..+
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~ 80 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHh
Confidence 3477888888888888999999999999999988776544
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=23.65 E-value=30 Score=22.92 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHhCc----cccccccHHHHHhHh
Q 020120 268 FQSSSIGHVIQTIIKKDGY----RGLIRGWMPRMLFHA 301 (331)
Q Consensus 268 ~~~~~~~~~~~~i~~~~G~----~~lyrG~~~~~~~~~ 301 (331)
+++.+.-+-+..++.+.|+ +.+|.||+....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4677777778888888887 568999998766543
No 9
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=20.78 E-value=92 Score=20.96 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.3
Q ss_pred ccccccchhhhHHhHhhhhhHHHHHHHHHHHHhhccC
Q 020120 184 LGAFYASYRTTVLMNAPFTAVHFATYEATKRGLMEIS 220 (331)
Q Consensus 184 ~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 220 (331)
+...+|-+.-.++..+|..++.+.+|++.++..++..
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444566777888999999999999998876544
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=17.60 E-value=91 Score=19.35 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=28.8
Q ss_pred HhhccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhCccccccchh
Q 020120 54 MAMFPVDTVKTHMQAIGSCPIKSVGVRQALKSILKTEGPSGLYRGIG 100 (331)
Q Consensus 54 ~i~~Pld~vk~~~Q~~~~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~ 100 (331)
-|--|+|.+.-.....-.......++...-+.-|+.|.-..+|||..
T Consensus 20 nIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~l 66 (67)
T 2bnk_A 20 NIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKLYRGSL 66 (67)
T ss_dssp TCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSCC
T ss_pred CCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhccc
Confidence 45568888775542110001122355566677789999999999963
Done!