Query 020121
Match_columns 331
No_of_seqs 220 out of 1031
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 2.5E-64 5.5E-69 467.7 27.0 286 18-320 32-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 2.6E-52 5.6E-57 377.3 14.7 177 61-238 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.6E-48 3.4E-53 350.0 19.9 168 73-241 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.2 3.6E-09 7.8E-14 102.2 20.1 120 49-175 1-138 (314)
5 PF14592 Chondroitinas_B: Chon 98.9 1.1E-08 2.5E-13 101.4 13.6 193 38-240 1-256 (425)
6 PLN02218 polygalacturonase ADP 98.3 1.7E-05 3.6E-10 79.9 15.1 103 98-204 219-323 (431)
7 TIGR03808 RR_plus_rpt_1 twin-a 98.3 4.6E-05 1E-09 76.3 17.6 101 48-154 56-167 (455)
8 PF13229 Beta_helix: Right han 98.3 1.8E-05 3.9E-10 66.5 12.9 133 96-242 2-138 (158)
9 PLN03003 Probable polygalactur 98.2 4.7E-05 1E-09 76.9 16.7 104 97-204 164-269 (456)
10 PLN02793 Probable polygalactur 98.2 1.9E-05 4.1E-10 79.8 13.8 103 97-203 203-307 (443)
11 PLN02188 polygalacturonase/gly 98.2 3.4E-05 7.4E-10 77.1 15.2 95 100-197 184-280 (404)
12 PLN02218 polygalacturonase ADP 98.2 0.00018 3.9E-09 72.6 20.4 138 97-248 195-352 (431)
13 PLN02155 polygalacturonase 98.2 2.7E-05 5.9E-10 77.6 14.4 100 100-203 174-275 (394)
14 TIGR03805 beta_helix_1 paralle 98.2 0.00022 4.7E-09 69.1 19.1 154 79-246 63-247 (314)
15 PLN03010 polygalacturonase 98.0 0.0013 2.8E-08 65.9 22.0 112 79-196 139-281 (409)
16 PF12708 Pectate_lyase_3: Pect 98.0 0.00079 1.7E-08 60.2 17.8 172 48-241 20-220 (225)
17 PF00295 Glyco_hydro_28: Glyco 97.9 6.5E-05 1.4E-09 73.0 10.6 104 97-204 118-223 (326)
18 PLN02793 Probable polygalactur 97.9 0.0024 5.3E-08 64.7 22.1 137 97-247 180-336 (443)
19 PLN03003 Probable polygalactur 97.8 0.0013 2.8E-08 66.7 18.3 124 79-218 113-262 (456)
20 PLN03010 polygalacturonase 97.8 0.0018 3.9E-08 65.0 18.8 70 97-172 210-287 (409)
21 PF13229 Beta_helix: Right han 97.8 0.0004 8.7E-09 58.2 11.5 129 96-238 25-158 (158)
22 PF05048 NosD: Periplasmic cop 97.6 0.0031 6.6E-08 57.9 15.2 105 96-215 59-165 (236)
23 PF01696 Adeno_E1B_55K: Adenov 97.6 0.0075 1.6E-07 59.7 18.5 184 34-243 47-242 (386)
24 PF05048 NosD: Periplasmic cop 97.6 0.0019 4.2E-08 59.2 13.7 130 95-240 36-167 (236)
25 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0015 3.3E-08 65.6 13.1 164 79-243 115-369 (455)
26 PLN02197 pectinesterase 97.5 0.019 4.2E-07 60.0 21.3 102 41-147 279-409 (588)
27 PLN02155 polygalacturonase 97.5 0.0049 1.1E-07 61.6 16.1 114 97-224 148-274 (394)
28 PLN02480 Probable pectinestera 97.5 0.022 4.7E-07 55.9 20.2 113 46-164 60-196 (343)
29 PF00295 Glyco_hydro_28: Glyco 97.4 0.0087 1.9E-07 58.2 16.6 88 97-197 95-187 (326)
30 PLN02188 polygalacturonase/gly 97.3 0.011 2.4E-07 59.2 16.9 137 97-247 158-316 (404)
31 COG3420 NosD Nitrous oxidase a 97.3 0.022 4.7E-07 55.4 17.7 127 73-203 45-195 (408)
32 PF07602 DUF1565: Protein of u 97.1 0.033 7.2E-07 52.2 16.7 121 47-169 16-166 (246)
33 smart00656 Amb_all Amb_all dom 97.1 0.016 3.4E-07 52.2 13.6 131 79-218 45-189 (190)
34 PLN02176 putative pectinestera 97.1 0.013 2.8E-07 57.5 13.9 118 42-165 44-188 (340)
35 PLN02416 probable pectinestera 97.0 0.089 1.9E-06 54.7 19.5 101 42-147 235-362 (541)
36 PLN02432 putative pectinestera 96.9 0.14 2.9E-06 49.4 19.1 114 46-165 23-153 (293)
37 PLN02170 probable pectinestera 96.8 0.14 3E-06 53.0 19.1 102 42-148 230-359 (529)
38 PLN02301 pectinesterase/pectin 96.7 0.2 4.4E-06 52.2 19.6 101 42-147 241-368 (548)
39 PLN02217 probable pectinestera 96.6 0.24 5.1E-06 52.7 20.0 196 42-243 255-517 (670)
40 COG5434 PGU1 Endopygalactoruna 96.6 0.021 4.5E-07 59.1 11.9 100 97-203 264-375 (542)
41 PLN02708 Probable pectinestera 96.6 0.18 4E-06 52.5 18.6 121 41-164 245-409 (553)
42 PLN02682 pectinesterase family 96.6 0.29 6.3E-06 48.5 18.9 111 46-164 82-227 (369)
43 PLN02497 probable pectinestera 96.6 0.35 7.5E-06 47.3 19.1 112 47-164 45-181 (331)
44 PLN02201 probable pectinestera 96.5 0.38 8.3E-06 49.8 19.9 101 42-147 211-338 (520)
45 PLN02665 pectinesterase family 96.5 0.46 1E-05 47.1 19.7 99 46-149 80-206 (366)
46 PLN02773 pectinesterase 96.5 0.43 9.3E-06 46.4 19.1 98 46-148 17-148 (317)
47 PLN02713 Probable pectinestera 96.4 0.32 6.9E-06 50.9 19.2 121 42-165 255-420 (566)
48 PLN02933 Probable pectinestera 96.4 0.49 1.1E-05 49.1 20.2 102 41-147 222-350 (530)
49 PF00544 Pec_lyase_C: Pectate 96.4 0.086 1.9E-06 47.8 13.0 127 80-215 52-200 (200)
50 PLN02990 Probable pectinestera 96.3 0.48 1E-05 49.7 19.6 120 41-165 263-427 (572)
51 PLN02745 Putative pectinestera 96.2 0.55 1.2E-05 49.5 19.7 101 42-147 290-417 (596)
52 PLN02488 probable pectinestera 96.2 0.57 1.2E-05 48.3 19.3 153 42-198 202-401 (509)
53 COG3866 PelB Pectate lyase [Ca 96.2 0.14 3.1E-06 49.2 13.9 168 97-277 95-278 (345)
54 PLN03043 Probable pectinestera 96.2 0.56 1.2E-05 48.9 19.2 116 47-165 236-393 (538)
55 PLN02468 putative pectinestera 96.1 0.58 1.2E-05 49.0 18.9 99 43-146 264-389 (565)
56 PLN02995 Probable pectinestera 96.0 0.11 2.5E-06 53.9 13.3 104 42-148 228-358 (539)
57 PF12708 Pectate_lyase_3: Pect 96.0 0.034 7.4E-07 49.6 8.5 102 80-197 98-221 (225)
58 PLN02506 putative pectinestera 96.0 0.66 1.4E-05 48.3 18.7 96 47-147 245-364 (537)
59 PLN02313 Pectinesterase/pectin 96.0 0.68 1.5E-05 48.7 18.9 142 47-196 288-477 (587)
60 PLN02916 pectinesterase family 95.9 0.8 1.7E-05 47.2 18.7 96 47-147 200-322 (502)
61 PLN02484 probable pectinestera 95.9 0.92 2E-05 47.7 19.5 97 47-147 285-405 (587)
62 PF01095 Pectinesterase: Pecti 95.8 0.41 8.8E-06 46.2 15.5 111 47-165 13-147 (298)
63 PLN02304 probable pectinestera 95.7 0.21 4.6E-06 49.7 13.2 113 47-165 88-227 (379)
64 PLN02314 pectinesterase 95.6 0.18 4E-06 52.9 13.0 98 47-147 291-410 (586)
65 PLN02634 probable pectinestera 95.0 0.68 1.5E-05 45.8 13.9 111 47-165 69-214 (359)
66 PRK10531 acyl-CoA thioesterase 94.8 1.3 2.8E-05 44.8 15.5 63 101-165 204-282 (422)
67 PLN02671 pectinesterase 94.7 0.87 1.9E-05 45.1 13.8 111 47-165 72-218 (359)
68 COG5434 PGU1 Endopygalactoruna 93.8 0.3 6.6E-06 50.7 9.0 98 95-197 288-399 (542)
69 PF14592 Chondroitinas_B: Chon 93.1 0.21 4.6E-06 50.3 6.3 36 130-165 164-210 (425)
70 PF08480 Disaggr_assoc: Disagg 92.7 0.92 2E-05 40.8 9.1 65 154-219 2-77 (198)
71 COG3420 NosD Nitrous oxidase a 87.4 3.1 6.7E-05 40.9 8.4 92 74-169 99-196 (408)
72 PF12541 DUF3737: Protein of u 83.3 7.8 0.00017 36.8 8.8 63 101-175 17-79 (277)
73 PF12541 DUF3737: Protein of u 82.2 23 0.00049 33.8 11.4 52 153-218 174-225 (277)
74 COG4677 PemB Pectin methyleste 75.9 50 0.0011 32.5 11.8 146 46-203 94-293 (405)
75 PF08480 Disaggr_assoc: Disagg 72.5 21 0.00046 32.2 7.8 73 128-200 32-113 (198)
76 PLN02698 Probable pectinestera 70.4 21 0.00045 37.0 8.4 50 96-148 264-316 (497)
77 PF03718 Glyco_hydro_49: Glyco 64.4 37 0.0008 35.5 8.7 92 96-193 345-443 (582)
78 TIGR03804 para_beta_helix para 63.5 16 0.00034 24.3 4.2 40 122-164 1-40 (44)
79 PF03211 Pectate_lyase: Pectat 62.6 67 0.0014 29.7 9.3 96 67-170 14-123 (215)
80 TIGR03804 para_beta_helix para 46.0 50 0.0011 21.8 4.4 41 96-141 1-41 (44)
81 PF01696 Adeno_E1B_55K: Adenov 42.1 85 0.0018 31.5 7.0 53 185-239 146-198 (386)
82 PF03211 Pectate_lyase: Pectat 34.2 1.5E+02 0.0033 27.3 6.9 69 96-172 77-145 (215)
83 PF07602 DUF1565: Protein of u 30.5 3.3E+02 0.0072 25.6 8.6 72 94-170 114-192 (246)
84 smart00710 PbH1 Parallel beta- 30.4 69 0.0015 17.5 2.7 14 131-144 3-16 (26)
85 PF06355 Aegerolysin: Aegeroly 28.8 2.9E+02 0.0062 23.4 7.2 59 102-161 14-88 (131)
86 PRK03174 sspH acid-soluble spo 28.6 46 0.001 24.4 2.0 19 121-139 14-32 (59)
87 KOG1777 Putative Zn-finger pro 26.8 7E+02 0.015 25.9 10.5 145 49-213 39-244 (625)
88 PRK01625 sspH acid-soluble spo 25.3 60 0.0013 23.8 2.1 19 121-139 14-32 (59)
89 TIGR02861 SASP_H small acid-so 24.7 59 0.0013 23.7 2.0 18 121-138 14-31 (58)
90 cd06401 PB1_TFG The PB1 domain 21.0 89 0.0019 24.4 2.4 26 32-62 52-77 (81)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-64 Score=467.66 Aligned_cols=286 Identities=32% Similarity=0.533 Sum_probs=242.4
Q ss_pred CCcccccC-------CCCCCCCCceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeC------ceeEeccceeee
Q 020121 18 GQAEGFGR-------FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS------SYLSVSSYKTID 84 (331)
Q Consensus 18 ~~a~Gfg~-------~ttGG~gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~------~~l~v~sn~TI~ 84 (331)
.+.+|||+ +||||.||++++|.|.+| |..++++.+|.++|+.|.|+|+++ ..|++.+||||+
T Consensus 32 ~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTiv 106 (345)
T COG3866 32 NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIV 106 (345)
T ss_pred ccccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEE
Confidence 34889986 589999999999999999 999999999997778899999998 356778999999
Q ss_pred eeccceEEecCcEEEeeeccEEEeeeEEecCCCCC--CCceEEcCCCceEEEeeeeeec--------CCCCeeeeecCCc
Q 020121 85 GRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHD--VDGIQIKPNSRHIWIDRCSLRD--------YDDGLIDITRQST 154 (331)
Q Consensus 85 G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~~~--~D~I~i~~~~~nVwIDHcs~s~--------~~Dg~~di~~~s~ 154 (331)
|.|..++|.|++|.|+.+.|||||||+|++-..+| .|+|+|+..++|||||||+|.. ..||++|++++++
T Consensus 107 G~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~An 186 (345)
T COG3866 107 GSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDAN 186 (345)
T ss_pred eeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCc
Confidence 99999999999999999999999999999865444 4999996689999999999987 6899999999999
Q ss_pred eEEEeccEEeccCceeeecCCCCC-CCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeeccC--ceE
Q 020121 155 DITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE--SQI 231 (331)
Q Consensus 155 ~vTiS~n~f~~h~k~~liG~~~~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~--a~v 231 (331)
+||||||+|++|+|.+|+|++|+. .+|++++||||||||.|+.+|+||+|||.+|+|||||+....|++..+++ |++
T Consensus 187 yITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Aki 266 (345)
T COG3866 187 YITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKI 266 (345)
T ss_pred EEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEE
Confidence 999999999999999999999875 45677999999999999999999999999999999999776666666666 999
Q ss_pred EEEceEEecCCcceeeeeeeccccCccccCccEEEEcCCeEEcCcccccccCcccceeecCCCCCCCCccCCchHHHHHH
Q 020121 232 YSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQI 311 (331)
Q Consensus 232 ~~e~N~f~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~~~~~~~~~~~~~~~p~~~y~~y~~~~A~~a~~~~ 311 (331)
++|+|||++...+..|-. ....+||+..+-+.+++.+...... .+...|.|+.+|+ |++++++ .||++
T Consensus 267 yvE~NyF~~~~~~~~f~d--------t~~~~GY~~~d~gsy~~~s~~~~~~--~~G~~w~ps~~Y~-Ytvd~~~-dVks~ 334 (345)
T COG3866 267 YVENNYFENGSEGLGFLD--------TKGTSGYANQDSGSYLNSSKSMSVR--AGGVTWNPSSYYS-YTVDPPE-DVKSF 334 (345)
T ss_pred EEecceeccCCCCceeee--------cCCccceEEeccCceecccCCcccc--cCCccCCCCCCcc-cccCChH-Hhhhh
Confidence 999999999866544421 1112499985555555543321111 2337899999995 9999996 69999
Q ss_pred HHhcccCCC
Q 020121 312 LQICTGWQS 320 (331)
Q Consensus 312 v~~~AG~~~ 320 (331)
|.++||+..
T Consensus 335 Vt~yAGaGk 343 (345)
T COG3866 335 VTNYAGAGK 343 (345)
T ss_pred hhcccccee
Confidence 999999764
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2.6e-52 Score=377.29 Aligned_cols=177 Identities=46% Similarity=0.737 Sum_probs=158.4
Q ss_pred EEEEeeeEEEeCceeEeccceeeeeeccceEEecCcEEEe-eeccEEEeeeEEecC----------C--CCCCCceEEcC
Q 020121 61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP 127 (331)
Q Consensus 61 Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~G~gi~i~-~~~NVIIrnL~i~~g----------~--~~~~D~I~i~~ 127 (331)
+||+++|+|++..+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+.. . ..+.|+|+++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4788999999999999999999999999999999999997 899999999999981 1 2578999998
Q ss_pred CCceEEEeeeeeecC--------CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCC
Q 020121 128 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR 199 (331)
Q Consensus 128 ~~~nVwIDHcs~s~~--------~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R 199 (331)
+++|||||||+|+|. .||++|++.++++||||||+|++|+|++|+|+++....+..++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998877667779999999999999999
Q ss_pred CcccccCeEEEEcceEeccccceeeeccCceEEEEceEE
Q 020121 200 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY 238 (331)
Q Consensus 200 ~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f 238 (331)
+||+|+|++|+|||||+++..|+++++++|++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.6e-48 Score=349.98 Aligned_cols=168 Identities=44% Similarity=0.712 Sum_probs=157.6
Q ss_pred ceeEeccceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecC-------
Q 020121 73 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY------- 142 (331)
Q Consensus 73 ~~l~v~sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~------- 142 (331)
.+|.|+|||||+|+|++++|.|.+|++++++|||||||+|+++.. ++.|+|.++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 568899999999999999999999999989999999999998754 578999997 799999999999998
Q ss_pred --CCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEecccc
Q 020121 143 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 220 (331)
Q Consensus 143 --~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~ 220 (331)
.|+++|++.++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998876555578999999999999999999999999999999999998
Q ss_pred ceeeeccCceEEEEceEEecC
Q 020121 221 YAVCASVESQIYSQCNIYEAG 241 (331)
Q Consensus 221 ~~~~~~~~a~v~~e~N~f~~~ 241 (331)
|+++.+.++++++|+|||++.
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999864
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.16 E-value=3.6e-09 Score=102.17 Aligned_cols=120 Identities=25% Similarity=0.341 Sum_probs=79.8
Q ss_pred HHHHhhcCCCeEEEEEeeeEEEeCceeEec-cceeeeeeccc-eEEe-------cCcEEEeeeccEEEeeeEEecCCCCC
Q 020121 49 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD 119 (331)
Q Consensus 49 Lr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g-~~i~-------G~gi~i~~~~NVIIrnL~i~~g~~~~ 119 (331)
||+|+.+..|...++=-.|+-++++.|.|. +++||.|.|.. ..|. +.+|.+. ++||.|++|+++.. .
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~---~ 76 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENT---K 76 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcC---C
Confidence 688998888875444356788877888887 89999998753 4444 2346554 78888888888764 2
Q ss_pred CCceEEcCCCceEEEeeeeeecC--------CCCeeeeecCCceEEEeccEEecc-CceeeecCC
Q 020121 120 VDGIQIKPNSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQH-DKTMLIGAD 175 (331)
Q Consensus 120 ~D~I~i~~~~~nVwIDHcs~s~~--------~Dg~~di~~~s~~vTiS~n~f~~h-~k~~liG~~ 175 (331)
.+||.+. +++++.|++|.+.|. .+|+ .. ..+.+++|.+|.++.. +.+..++.+
T Consensus 77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~GI-~~-~~s~~v~I~~n~i~g~~d~GIyv~~s 138 (314)
T TIGR03805 77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYGI-YP-VESTNVLVEDSYVRGASDAGIYVGQS 138 (314)
T ss_pred CCeEEEe-CCCCEEEEeeEEEeccCccccCCcceE-EE-eccCCEEEECCEEECCCcccEEECCC
Confidence 4677775 677777777777643 3343 33 2467777777777653 334444443
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.94 E-value=1.1e-08 Score=101.36 Aligned_cols=193 Identities=15% Similarity=0.225 Sum_probs=93.0
Q ss_pred ecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeCceeEec------cceeeeee-ccceEEecCc-EEEeeeccEEEee
Q 020121 38 VTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICN 109 (331)
Q Consensus 38 Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~------sn~TI~G~-g~g~~i~G~g-i~i~~~~NVIIrn 109 (331)
|+|.++ |++||++..|...++=..|+-+ ...|.+. ..+||..+ ..++.|.|.. |+|. .+.++|++
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 667776 9999998877665554677766 2345542 46888887 4467888765 7776 78999999
Q ss_pred eEEecCCCCC---------C-----Cce--------------------EE---cCCCceEEEeeeeeecC--CCCeeeee
Q 020121 110 LEFEGGRGHD---------V-----DGI--------------------QI---KPNSRHIWIDRCSLRDY--DDGLIDIT 150 (331)
Q Consensus 110 L~i~~g~~~~---------~-----D~I--------------------~i---~~~~~nVwIDHcs~s~~--~Dg~~di~ 150 (331)
|.|+.+.... . +-. .+ .-.+++--||||.|..- ..-++-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998642100 0 000 11 00133444699999752 22333332
Q ss_pred -------cCCceEEEeccEEecc-------CceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc--ccCeEEEEcce
Q 020121 151 -------RQSTDITVSRCYFTQH-------DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFGKVHLYNNY 214 (331)
Q Consensus 151 -------~~s~~vTiS~n~f~~h-------~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~G~~hv~NN~ 214 (331)
....+-+|.+|+|..+ ..++-||.+.....+ -+.++.||||.+|..-.=-+ +.+...++||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 1245788999999843 456778876433222 26789999999999875444 33556677777
Q ss_pred EeccccceeeeccCceEEEEceEEec
Q 020121 215 TRNWGIYAVCASVESQIYSQCNIYEA 240 (331)
Q Consensus 215 ~~n~~~~~~~~~~~a~v~~e~N~f~~ 240 (331)
|++... .+..|-+-.-.+++|||..
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred EEeccc-eEEEecCCCceEeccEEec
Confidence 766542 3333333334445666654
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.30 E-value=1.7e-05 Score=79.90 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=73.5
Q ss_pred EEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCC
Q 020121 98 RLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP 176 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~ 176 (331)
.+..++||+|+||+|.... ....|||.+. +++||+|.+|.+.-+.| ++.++.++++|+|++|.+. +.-+.-||+-.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDD-cIaIksgs~nI~I~n~~c~-~GHGisIGS~g 295 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDD-CISIESGSQNVQINDITCG-PGHGISIGSLG 295 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCc-eEEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence 3345677777777777532 3467999997 89999999999998755 5689989999999999995 33456788753
Q ss_pred CCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121 177 SHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (331)
Q Consensus 177 ~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (331)
... .+.--+|++.++.|.++. +.=|++
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 221 222347889888887753 344443
No 7
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.28 E-value=4.6e-05 Score=76.30 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=68.6
Q ss_pred hHHHHhhcCC-Ce-EEEEEeeeEEEeCceeEeccceeeeeeccceE---EecCc-EE-EeeeccEEEeeeEEecCCC---
Q 020121 48 SLREGCRRRE-PL-WIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGRG--- 117 (331)
Q Consensus 48 sLr~ai~~~~-pr-~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~---i~G~g-i~-i~~~~NVIIrnL~i~~g~~--- 117 (331)
.|++||++.. |. +|++ -.|+- +.++|.+.+++||.|+. +++ |.|.+ +. -..++||.|++|+|++...
T Consensus 56 ALQaAIdaAa~gG~tV~L-p~G~Y-~~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLAL-PPGVY-RTGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHhhcCCCEEEE-CCCce-ecccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 4999997643 32 2332 23332 34678888999999984 343 66554 22 2359999999999997542
Q ss_pred CCCCceEEcCCCceEEEeeeeeecCC-CCeeeeecCCc
Q 020121 118 HDVDGIQIKPNSRHIWIDRCSLRDYD-DGLIDITRQST 154 (331)
Q Consensus 118 ~~~D~I~i~~~~~nVwIDHcs~s~~~-Dg~~di~~~s~ 154 (331)
...-+|.+. .++++-|.+|.+.... .|. ++. +++
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FGI-~L~-~~~ 167 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNGI-WLE-TVS 167 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcceE-EEE-cCc
Confidence 235578885 8999999999999884 775 453 344
No 8
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.28 E-value=1.8e-05 Score=66.49 Aligned_cols=133 Identities=17% Similarity=0.278 Sum_probs=88.5
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
||.+.+..++.|++.+|+.. ..+||.+. .+..+.|++|+|.+...++ .+. ...++++++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~gi-~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYGI-YVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTSE-EEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcEE-EEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57787788999999999974 46899997 6677899999999955554 564 458999999999987744443322
Q ss_pred CCCCCCcceEEEEeceeecCCCCCCcccc--cCeEEEEcceEeccccceeeeccCc--eEEEEceEEecCC
Q 020121 176 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQ 242 (331)
Q Consensus 176 ~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~~~~~~~~a--~v~~e~N~f~~~~ 242 (331)
. ++++.+|.+.++..-.=.+. ...+.+.||.+.+....++...... .+.+++|.|....
T Consensus 76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 1 57888888888765433332 2357899999988776777666655 8888999987654
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.23 E-value=4.7e-05 Score=76.94 Aligned_cols=104 Identities=24% Similarity=0.419 Sum_probs=77.1
Q ss_pred EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
+.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++++|+|++|.+.. .-+.-||+-
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl 240 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL 240 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence 45556888888888888653 3567999997 899999999999887666 5898889999999999863 335678875
Q ss_pred CCCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121 176 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (331)
Q Consensus 176 ~~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (331)
.... .+.--+|++.++.|.++. +.=|++
T Consensus 241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 241 GKDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 3321 222358999999998763 333553
No 10
>PLN02793 Probable polygalacturonase
Probab=98.23 E-value=1.9e-05 Score=79.76 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=72.5
Q ss_pred EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
|.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++.+|+|++|.+.. .-+.-||+-
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl 279 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL 279 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence 34445677777777776543 3467999997 899999999999877665 5788889999999999863 335668874
Q ss_pred CCC-CCCcceEEEEeceeecCCCCCCccc
Q 020121 176 PSH-VGDRCIRVTIHHCLFDGTRQRHPRL 203 (331)
Q Consensus 176 ~~~-~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (331)
... ....-.+|++.++.|.+.. +.=|+
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~-~GirI 307 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTD-NGVRI 307 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence 221 1122347999999888764 33444
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.22 E-value=3.4e-05 Score=77.10 Aligned_cols=95 Identities=21% Similarity=0.371 Sum_probs=69.3
Q ss_pred eeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC
Q 020121 100 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178 (331)
Q Consensus 100 ~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~ 178 (331)
..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.| .+.++.++++|+|+++... +.-++-||+-...
T Consensus 184 ~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~-~ghGisiGSlG~~ 260 (404)
T PLN02188 184 VECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCG-PGHGISVGSLGRY 260 (404)
T ss_pred EccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEc-CCCcEEeCCCCCC
Confidence 34667777777776532 3467999997 89999999999998877 5589888999999999885 3346677873221
Q ss_pred -CCCcceEEEEeceeecCCC
Q 020121 179 -VGDRCIRVTIHHCLFDGTR 197 (331)
Q Consensus 179 -~~d~~~~vT~hhN~f~~~~ 197 (331)
....--+|++.++.|.++.
T Consensus 261 ~~~~~V~nV~v~n~~~~~t~ 280 (404)
T PLN02188 261 PNEGDVTGLVVRDCTFTGTT 280 (404)
T ss_pred CcCCcEEEEEEEeeEEECCC
Confidence 1122348899999888763
No 12
>PLN02218 polygalacturonase ADPG
Probab=98.22 E-value=0.00018 Score=72.55 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=91.8
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
|++.+++|+.|++|+|+....| .|.+. .++||+|++.++.. ..||. |+ ..+.+|+|++|.|...+-+.-
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEE
Confidence 5667899999999999986543 57776 79999999999864 57886 88 468999999999998888777
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-ccCeEEEEcceEeccccceeee--c-----cCceEEEEce
Q 020121 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA--S-----VESQIYSQCN 236 (331)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~--~-----~~a~v~~e~N 236 (331)
|.+.. .+|++.++++..... +.+.- ..-.+++.|+.+.+.. .++.. . .-.+|.+++.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76542 268888777743221 10000 0014567777776643 34321 1 1235666777
Q ss_pred EEecCCcceeee
Q 020121 237 IYEAGQKKRTFE 248 (331)
Q Consensus 237 ~f~~~~~~~~~~ 248 (331)
.+++...+..++
T Consensus 341 ~m~~V~~pI~Id 352 (431)
T PLN02218 341 QMENVKNPIIID 352 (431)
T ss_pred EEEcccccEEEE
Confidence 777665554443
No 13
>PLN02155 polygalacturonase
Probab=98.22 E-value=2.7e-05 Score=77.56 Aligned_cols=100 Identities=17% Similarity=0.321 Sum_probs=71.8
Q ss_pred eeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC
Q 020121 100 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178 (331)
Q Consensus 100 ~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~ 178 (331)
..++||.|+||+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.++.+|+|++|.+.. .-+.-||+....
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~~ 250 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAKE 250 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccccc
Confidence 34566666666666532 3457999997 899999999999988885 5888889999999998874 345678875321
Q ss_pred -CCCcceEEEEeceeecCCCCCCccc
Q 020121 179 -VGDRCIRVTIHHCLFDGTRQRHPRL 203 (331)
Q Consensus 179 -~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (331)
....-.+|++.++.|.+.. +.=|+
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~-~GirI 275 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQ-NGVRI 275 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence 1222348999999998753 33344
No 14
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.16 E-value=0.00022 Score=69.11 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=100.7
Q ss_pred cceeeeeeccceEEe---cCcEEEeeeccEEEeeeEEecCCC----CCCCceEEcCCCceEEEeeeeeecCCCCeeeeec
Q 020121 79 SYKTIDGRGQRIKLT---GKGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR 151 (331)
Q Consensus 79 sn~TI~G~g~g~~i~---G~gi~i~~~~NVIIrnL~i~~g~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~ 151 (331)
+++||.+. +|. +.+|.+.+++|++||++++..... ...+||.+. .++++.|.+|.++...|--+.+.
T Consensus 63 ~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv~- 136 (314)
T TIGR03805 63 DDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYVG- 136 (314)
T ss_pred CCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEEC-
Confidence 56666664 222 357888889999999999974321 246889997 79999999999998877445663
Q ss_pred CCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCC--------cccccCeEEEEcceEeccc----
Q 020121 152 QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--------PRLRFGKVHLYNNYTRNWG---- 219 (331)
Q Consensus 152 ~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~--------Pr~r~G~~hv~NN~~~n~~---- 219 (331)
.+++++|++|.+.+..++..+-.+. ++.+.+|.+.++..-- |.+....+.++||.+.+..
T Consensus 137 ~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~ 208 (314)
T TIGR03805 137 QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNF 208 (314)
T ss_pred CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCC
Confidence 6889999999998776666654432 3456666665543221 1121235677777665321
Q ss_pred ------------cceeeeccCceEEEEceEEecCCccee
Q 020121 220 ------------IYAVCASVESQIYSQCNIYEAGQKKRT 246 (331)
Q Consensus 220 ------------~~~~~~~~~a~v~~e~N~f~~~~~~~~ 246 (331)
..++......++.+++|.|.......+
T Consensus 209 ~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 209 APAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred cccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 112222333577888999987665443
No 15
>PLN03010 polygalacturonase
Probab=98.03 E-value=0.0013 Score=65.92 Aligned_cols=112 Identities=26% Similarity=0.458 Sum_probs=71.3
Q ss_pred cceeeeeeccceEEecCc------EEEeeeccEEEeeeEEecC-----------------------C-CCCCCceEEcCC
Q 020121 79 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGG-----------------------R-GHDVDGIQIKPN 128 (331)
Q Consensus 79 sn~TI~G~g~g~~i~G~g------i~i~~~~NVIIrnL~i~~g-----------------------~-~~~~D~I~i~~~ 128 (331)
.|++|.|.| +|.|.| |++.+++||.|++|+++.. . ....|||.+. .
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~-~ 214 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDIS-Y 214 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeee-c
Confidence 466776643 455544 4455555555555555432 2 2457999997 7
Q ss_pred CceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCC-CCCcceEEEEeceeecCC
Q 020121 129 SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGT 196 (331)
Q Consensus 129 ~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~-~~d~~~~vT~hhN~f~~~ 196 (331)
+++|+|.+|.+..+.|. +.++.++++++|.++.... .-+.-||+.... ..+.--+|++.++.|.+.
T Consensus 215 s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 215 STNINIFDSTIQTGDDC-IAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred cceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 89999999999877555 5888777777777665542 225667764322 122234788888888765
No 16
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.97 E-value=0.00079 Score=60.23 Aligned_cols=172 Identities=19% Similarity=0.281 Sum_probs=95.6
Q ss_pred hHHHHh--hc-CCCeEEEEEeeeEEEeCceeEeccceeeeeeccce-EEe--cCc--E-------EEee-ecc--EEEee
Q 020121 48 SLREGC--RR-REPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GKG--L-------RLKE-CEH--VIICN 109 (331)
Q Consensus 48 sLr~ai--~~-~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~-~i~--G~g--i-------~i~~-~~N--VIIrn 109 (331)
.||+|| .+ ....+|.| -.|+-.++++|.+.++++|.|.|... .+. +.. + .+.. ..+ +.|+|
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~-P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYF-PPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEE-cCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 399999 33 34454444 68899999999999999999997633 333 111 1 1111 122 44999
Q ss_pred eEEecCCCCC---CCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEec------cEEeccCceeeecCCCCCCC
Q 020121 110 LEFEGGRGHD---VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR------CYFTQHDKTMLIGADPSHVG 180 (331)
Q Consensus 110 L~i~~g~~~~---~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~------n~f~~h~k~~liG~~~~~~~ 180 (331)
|+|....... ..+|.+. .++++||++|++.......+.+. ..+...+.+ +.|+++..
T Consensus 99 l~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------ 164 (225)
T PF12708_consen 99 LTIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------ 164 (225)
T ss_dssp EEEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE------------
T ss_pred eEEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee------------
Confidence 9999765322 4678886 78999999999998654444553 122222222 22222110
Q ss_pred CcceEEEEeceeecCCCCCCccccc--CeEEEEcceEeccccceeeeccCceEEEEceEEecC
Q 020121 181 DRCIRVTIHHCLFDGTRQRHPRLRF--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241 (331)
Q Consensus 181 d~~~~vT~hhN~f~~~~~R~Pr~r~--G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~ 241 (331)
.+.....++.....- +.. -.+.+.|+++.+....++....+..+.+++|.|++.
T Consensus 165 ----~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~ 220 (225)
T PF12708_consen 165 ----NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENC 220 (225)
T ss_dssp ----EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESS
T ss_pred ----EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECC
Confidence 111111112111111 111 245677777777445677776666777777777754
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.93 E-value=6.5e-05 Score=72.97 Aligned_cols=104 Identities=26% Similarity=0.482 Sum_probs=74.2
Q ss_pred EEEeeeccEEEeeeEEecCC-CCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 97 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~-~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
+.+..++||.|++|+|+... ....|||.+. +++||.|++|.+..+.|. +.++..+.+|+|++|.|.. ..+.-||+.
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~ 194 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE 194 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence 56667899999999998653 2467999997 899999999999877555 5788777899999999974 444667754
Q ss_pred CCCC-CCcceEEEEeceeecCCCCCCcccc
Q 020121 176 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR 204 (331)
Q Consensus 176 ~~~~-~d~~~~vT~hhN~f~~~~~R~Pr~r 204 (331)
.... ...--+|+|.++.|.++. |.-|++
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 3211 111248999999888764 544553
No 18
>PLN02793 Probable polygalacturonase
Probab=97.93 E-value=0.0024 Score=64.68 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=88.5
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
|++.+++||.|++|+++....+ .+.+. .+++|.|++.++.. ..||. |+ ..+++|+|++|.|...+-+..
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEE
Confidence 5667899999999999986533 36676 78999999999963 57886 88 468999999999999888877
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCccc-ccCeEEEEcceEeccccceeee--ccC-----ceEEEEce
Q 020121 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVCA--SVE-----SQIYSQCN 236 (331)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~~~~~--~~~-----a~v~~e~N 236 (331)
+.... .+|++.++.+..... +.... ..-.+.+.|+.+.+.. +++.. ..+ .+|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 75432 157777766532211 11100 0114678888777653 34321 111 24555555
Q ss_pred EEecCCcceee
Q 020121 237 IYEAGQKKRTF 247 (331)
Q Consensus 237 ~f~~~~~~~~~ 247 (331)
..++...+..+
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 55555444333
No 19
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.84 E-value=0.0013 Score=66.72 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=86.0
Q ss_pred cceeeeeeccceEEecCc-------------EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec----
Q 020121 79 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---- 141 (331)
Q Consensus 79 sn~TI~G~g~g~~i~G~g-------------i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~---- 141 (331)
.+++|.|.| +|.|.| |++.+++|+.|++|+++.... =.|.+. .+++|.|++..+..
T Consensus 113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~s 185 (456)
T PLN03003 113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESS 185 (456)
T ss_pred cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCC
Confidence 467777753 566543 677889999999999997643 346776 78999999999864
Q ss_pred -CCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCC-------CCcc-cccCeEEEEc
Q 020121 142 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYN 212 (331)
Q Consensus 142 -~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr-~r~G~~hv~N 212 (331)
..||. |+ ..+++|+|.+|.|...+-+.-+.+... +|++.++.+..... +... -..-.+++.|
T Consensus 186 pNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n 256 (456)
T PLN03003 186 PNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256 (456)
T ss_pred CCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence 57886 88 468999999999998888887765421 56666665532211 1000 0012467888
Q ss_pred ceEecc
Q 020121 213 NYTRNW 218 (331)
Q Consensus 213 N~~~n~ 218 (331)
+.+.+.
T Consensus 257 ~~~~~T 262 (456)
T PLN03003 257 CNFRGT 262 (456)
T ss_pred eEEECC
Confidence 887764
No 20
>PLN03010 polygalacturonase
Probab=97.82 E-value=0.0018 Score=64.96 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=34.3
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec--------CCceEEEeccEEeccCc
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR--------QSTDITVSRCYFTQHDK 168 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~--------~s~~vTiS~n~f~~h~k 168 (331)
|-+..++||.|+|-.|+. .+|+|.+..+++++.|..+....+. | +.+.. ...+|+|++|.|.+...
T Consensus 210 iDi~~s~nV~I~n~~I~~----gDDcIaiksgs~ni~I~~~~C~~gH-G-isIGS~g~~~~~~~V~nV~v~n~~i~~t~~ 283 (409)
T PLN03010 210 IDISYSTNINIFDSTIQT----GDDCIAINSGSSNINITQINCGPGH-G-ISVGSLGADGANAKVSDVHVTHCTFNQTTN 283 (409)
T ss_pred eeeeccceEEEEeeEEec----CCCeEEecCCCCcEEEEEEEeECcC-C-EEEccCCCCCCCCeeEEEEEEeeEEeCCCc
Confidence 444444555555555553 3566666545556666555543221 2 12211 13466666666666554
Q ss_pred eeee
Q 020121 169 TMLI 172 (331)
Q Consensus 169 ~~li 172 (331)
+.-|
T Consensus 284 GirI 287 (409)
T PLN03010 284 GARI 287 (409)
T ss_pred ceEE
Confidence 4333
No 21
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.77 E-value=0.0004 Score=58.21 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=74.4
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCc-eeeecC
Q 020121 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA 174 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k-~~liG~ 174 (331)
+|.+...+++.|++-+|+. ...+|.+. ...++.|+.|.|++...+ +.+. .+..++|++|.|.+... +..+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence 5777767777888888886 45778886 567888888888887733 3453 67888888888887654 444432
Q ss_pred CCCCCCCcceEEEEeceeecCCCCCCccccc-C--eEEEEcceEeccccceeeeccCce-EEEEceEE
Q 020121 175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY 238 (331)
Q Consensus 175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G--~~hv~NN~~~n~~~~~~~~~~~a~-v~~e~N~f 238 (331)
....+++.+|.|.++....=.+.. . .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus 98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~ 158 (158)
T PF13229_consen 98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF 158 (158)
T ss_dssp -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence 011477888888877743333322 2 567788888877777776555444 66677766
No 22
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.57 E-value=0.0031 Score=57.90 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=61.3
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
||.+..+++++|++-.|+.. ..||.+. .+.+..|..|.|+....|+ .+. .+...+|++|.|.+...+..+-.+
T Consensus 59 GI~~~~s~~~~i~~n~i~~n----~~Gi~l~-~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~I~~N~i~~~~~GI~l~~s 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNN----GYGIYLM-GSSNNTISNNTISNNGYGI-YLY-GSSNNTISNNTISNNGYGIYLSSS 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEcc----CCCEEEE-cCCCcEEECCEecCCCceE-EEe-eCCceEEECcEEeCCCEEEEEEeC
Confidence 46666666666666666643 2667765 4444577777777766654 342 456677777777755555555433
Q ss_pred CCCCCCcceEEEEeceeecCCCCCCcc-ccc-CeEEEEcceE
Q 020121 176 PSHVGDRCIRVTIHHCLFDGTRQRHPR-LRF-GKVHLYNNYT 215 (331)
Q Consensus 176 ~~~~~d~~~~vT~hhN~f~~~~~R~Pr-~r~-G~~hv~NN~~ 215 (331)
. +.++.+|.|.++..---. +.. ....+++|.|
T Consensus 132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 1 356667777666333333 221 2456777766
No 23
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.57 E-value=0.0075 Score=59.69 Aligned_cols=184 Identities=17% Similarity=0.302 Sum_probs=129.8
Q ss_pred ceEEecCCCCCCCchHHHHhhcCCCeEEEEEeeeEEEeCceeEeccceeeeeeccceEEecC---cEEEe---------e
Q 020121 34 PVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---GLRLK---------E 101 (331)
Q Consensus 34 ~vv~Vt~l~d~g~GsLr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~G~---gi~i~---------~ 101 (331)
++|.+.=.+| |.++|.+-.. |.++=+-+-.+.++|.|++..+|+|+|+.+.|.+. +|.+. +
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 3555555666 9999987541 23333444566788999999999999998888643 25442 3
Q ss_pred eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCCCCCCCC
Q 020121 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD 181 (331)
Q Consensus 102 ~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d 181 (331)
=.+|.+.|++|.... ..-|+-+. ...++.|..|.|....--.++.. ....|..|.|..-+|+.....
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~------- 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG------- 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence 579999999999753 23556665 67899999999998887777775 467899999998888775322
Q ss_pred cceEEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeeccCceEEEEceEEecCCc
Q 020121 182 RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQK 243 (331)
Q Consensus 182 ~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~~~~ 243 (331)
..++++.+|.|..|.-=- +..|..++.+|...+.. -.+-....+.+ .+|.|.....
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~-Cf~l~~g~g~i--~~N~v~~~~~ 242 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG-CFVLMKGTGSI--KHNMVCGPND 242 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccc-eEEEEcccEEE--eccEEeCCCC
Confidence 236788999999876543 44588899999888764 22333333344 6888876543
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.56 E-value=0.0019 Score=59.22 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred CcEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecC
Q 020121 95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA 174 (331)
Q Consensus 95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~ 174 (331)
.++.+..+.++.|++.+|+.. ..||.+. .++++-|..|.++....|+ .+. .+.+.+|++|.|.+...+.++..
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~Gi-~l~-~s~~~~I~~N~i~~n~~GI~l~~ 108 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYGI-YLM-GSSNNTISNNTISNNGYGIYLYG 108 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCCE-EEE-cCCCcEEECCEecCCCceEEEee
Confidence 356777799999999999964 5789887 7788889999999988886 453 34455999999998777766644
Q ss_pred CCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEeccccceee-eccCceEEEEceEEec
Q 020121 175 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVC-ASVESQIYSQCNIYEA 240 (331)
Q Consensus 175 ~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~~~~-~~~~a~v~~e~N~f~~ 240 (331)
+. ..++.+|.|. ....-=.+.. ....+.+|.+.+...+++. ........+.+|.|.+
T Consensus 109 s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 109 SS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred CC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence 32 3578888887 3333333332 4678899998887668887 5555566677999943
No 25
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.51 E-value=0.0015 Score=65.61 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=89.9
Q ss_pred cceeeeee-----ccceEEecCcEEEeeeccEEEeeeEEecCCC-------------------CCCCceEEcCCCceEEE
Q 020121 79 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-------------------HDVDGIQIKPNSRHIWI 134 (331)
Q Consensus 79 sn~TI~G~-----g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~-------------------~~~D~I~i~~~~~nVwI 134 (331)
+++||.|. |....-...+|.+++|+++.|++.+|++... ....+|.+. .++++.|
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence 45555554 4332223345778889999999999997520 012345554 5668888
Q ss_pred eeeeeecCCCCeeeeec-----------------------------------CCceEEEeccEEeccCceeeecCCCCCC
Q 020121 135 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIGADPSHV 179 (331)
Q Consensus 135 DHcs~s~~~Dg~~di~~-----------------------------------~s~~vTiS~n~f~~h~k~~liG~~~~~~ 179 (331)
.+|+++...|..+.+.+ .+.+++|+.|.++++.+..+.+.+.++.
T Consensus 194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~ 273 (455)
T TIGR03808 194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNI 273 (455)
T ss_pred ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCc
Confidence 88888887775443321 2457888888888777444333221111
Q ss_pred -------CC-c--ceEEEE-ec-eeecCCCCCCcccc-----c---CeE-EEEcceEeccc-----------cceeeecc
Q 020121 180 -------GD-R--CIRVTI-HH-CLFDGTRQRHPRLR-----F---GKV-HLYNNYTRNWG-----------IYAVCASV 227 (331)
Q Consensus 180 -------~d-~--~~~vT~-hh-N~f~~~~~R~Pr~r-----~---G~~-hv~NN~~~n~~-----------~~~~~~~~ 227 (331)
.+ | .++.-| |+ +.+.++....-... | |.. .+-.|++.|.. ..+++...
T Consensus 274 ~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ 353 (455)
T TIGR03808 274 QITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYV 353 (455)
T ss_pred EEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEE
Confidence 11 1 123233 22 44544444443332 1 332 45556555521 23455556
Q ss_pred CceEEEEceEEecCCc
Q 020121 228 ESQIYSQCNIYEAGQK 243 (331)
Q Consensus 228 ~a~v~~e~N~f~~~~~ 243 (331)
||.-.+.+|+-|+.|.
T Consensus 354 ead~~~~~n~~e~ap~ 369 (455)
T TIGR03808 354 EADTAVTGNVVENAPS 369 (455)
T ss_pred EecceeccceecCCcc
Confidence 6666666777776654
No 26
>PLN02197 pectinesterase
Probab=97.49 E-value=0.019 Score=60.04 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=67.0
Q ss_pred CCCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-c-------Cc------
Q 020121 41 LSDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------KG------ 96 (331)
Q Consensus 41 l~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G-------~g------ 96 (331)
.+.+|.| |+++||++ ...|+||+=..|+-+ +.+.|. +|+|+.|.|.+-+|. + .|
T Consensus 279 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~S 356 (588)
T PLN02197 279 VAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLS 356 (588)
T ss_pred EcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccce
Confidence 4555654 88999965 223554443456644 556664 689999987644432 1 11
Q ss_pred --EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 97 --LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 97 --i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
+.+ .+++++.|||+|++..+ +..-|+.+ .+++..+.+|.|....|-++
T Consensus 357 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~GyQDTLy 409 (588)
T PLN02197 357 GTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRV--NGDRAVIFNCRFDGYQDTLY 409 (588)
T ss_pred eEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEe--cCCcEEEEEeEEEecCcceE
Confidence 333 37999999999998543 23445555 47889999999987766664
No 27
>PLN02155 polygalacturonase
Probab=97.47 E-value=0.0049 Score=61.58 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=80.0
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
|++.+++||.|++|+++.... =.|.+. .+++|.|+|..+.. ..||. |+ ..+++|+|++|.|...+-+..
T Consensus 148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEE
Confidence 677789999999999997643 346665 78999999999953 46886 88 468999999999998888887
Q ss_pred ecCCCCCCCCcceEEEEeceeecCC-------CCCCcc-cccCeEEEEcceEeccccceee
Q 020121 172 IGADPSHVGDRCIRVTIHHCLFDGT-------RQRHPR-LRFGKVHLYNNYTRNWGIYAVC 224 (331)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~-------~~R~Pr-~r~G~~hv~NN~~~n~~~~~~~ 224 (331)
++... -+|++.++.+... ..+.+. -..-.+.+.|+.+.+.. +++.
T Consensus 222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~Gir 274 (394)
T PLN02155 222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVR 274 (394)
T ss_pred cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEE
Confidence 76542 1577766655431 112221 11125678888887753 4543
No 28
>PLN02480 Probable pectinesterase
Probab=97.47 E-value=0.022 Score=55.93 Aligned_cols=113 Identities=11% Similarity=0.208 Sum_probs=72.1
Q ss_pred CchHHHHhhcCC----CeEEEEEeeeEEEeCceeEe---ccceeeeeeccc-eEEecC----------cEEEeeeccEEE
Q 020121 46 PGSLREGCRRRE----PLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLKECEHVII 107 (331)
Q Consensus 46 ~GsLr~ai~~~~----pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g-~~i~G~----------gi~i~~~~NVII 107 (331)
.-|+++||++.. .+++++=..|+-+ +.+.| ++++||.|.+.. ..|.+. .|.+. ++++++
T Consensus 60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a 136 (343)
T PLN02480 60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVA 136 (343)
T ss_pred cccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEE
Confidence 358999997632 3444433456555 56777 367999998742 344432 25555 899999
Q ss_pred eeeEEecCCC------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121 108 CNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (331)
Q Consensus 108 rnL~i~~g~~------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~ 164 (331)
+||+|++... ...-|+-+.-.++++.+.+|.|.-..|-|++-. ..--..+|.|.
T Consensus 137 ~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~C~Ie 196 (343)
T PLN02480 137 FGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK---GRHYYHSCYIQ 196 (343)
T ss_pred EeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC---CCEEEEeCEEE
Confidence 9999998631 123455554357899999999988888776431 23333455544
No 29
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.40 E-value=0.0087 Score=58.16 Aligned_cols=88 Identities=20% Similarity=0.513 Sum_probs=68.0
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
|++.+++|+.|++|+++....| .+.+. .+++|+|+|.++.. ..||+ |+. .+.+|+|.+|.|...+-+.-
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDGi-d~~-~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDGI-DID-SSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--SE-EEE-SEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcceE-EEE-eeeEEEEEEeecccccCccc
Confidence 7888899999999999987544 47776 79999999999863 46886 884 68999999999998877776
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCC
Q 020121 172 IGADPSHVGDRCIRVTIHHCLFDGTR 197 (331)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~ 197 (331)
+.+... +|++.++++.+..
T Consensus 169 iks~~~-------ni~v~n~~~~~gh 187 (326)
T PF00295_consen 169 IKSGSG-------NILVENCTCSGGH 187 (326)
T ss_dssp ESSEEC-------EEEEESEEEESSS
T ss_pred cccccc-------ceEEEeEEEeccc
Confidence 654321 6888888886543
No 30
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.34 E-value=0.011 Score=59.22 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=90.8
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec-----CCCCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~-----~~Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
|.+.+++||.|++|+|+....| .|.+. .+++|.|++.++.. ..||+ |+ ..+++|+|.+|.|...+-+.-
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEE
Confidence 4666899999999999986533 46776 78999999999864 57886 88 468999999999999888888
Q ss_pred ecCCCCCCCCcceEEEEeceeecCCCC-------CCcc-cccCeEEEEcceEeccccceeeec------c---CceEEEE
Q 020121 172 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYNNYTRNWGIYAVCAS------V---ESQIYSQ 234 (331)
Q Consensus 172 iG~~~~~~~d~~~~vT~hhN~f~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~~~~~~------~---~a~v~~e 234 (331)
+.+... +|++-++...+... +... -....+.+.|+.+.+.. +++..- . -.+|.+|
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 864321 56776665533211 0000 01124678888887753 344321 1 1256667
Q ss_pred ceEEecCCcceee
Q 020121 235 CNIYEAGQKKRTF 247 (331)
Q Consensus 235 ~N~f~~~~~~~~~ 247 (331)
+-.+++...+..+
T Consensus 304 ni~m~~v~~pI~i 316 (404)
T PLN02188 304 NIVMNNVTNPIII 316 (404)
T ss_pred eEEecCccceEEE
Confidence 7677666555444
No 31
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.022 Score=55.39 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=84.9
Q ss_pred ceeEeccceeeeeeccceEEecCc----EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCC
Q 020121 73 SYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDG 145 (331)
Q Consensus 73 ~~l~v~sn~TI~G~g~g~~i~G~g----i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg 145 (331)
+.+.|..-+|+.|. .++++.|.+ +++. +.++|||.|++|+... .-+-+|-+....+.-.|.||++.....|
T Consensus 45 g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~G 122 (408)
T COG3420 45 GNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFG 122 (408)
T ss_pred ccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceE
Confidence 56788888899897 456777654 6775 9999999999997542 2345677765778888999999888888
Q ss_pred eeeeecCCceEEEeccEEecc---------CceeeecCCC--------CCCCCcceEEEEeceeecCCCCCCccc
Q 020121 146 LIDITRQSTDITVSRCYFTQH---------DKTMLIGADP--------SHVGDRCIRVTIHHCLFDGTRQRHPRL 203 (331)
Q Consensus 146 ~~di~~~s~~vTiS~n~f~~h---------~k~~liG~~~--------~~~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (331)
+. + +++.++-|--|.+..- .-..+|..++ ++..|.-.-=|-|||.|.++..|.-|+
T Consensus 123 i~-l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~~Ry 195 (408)
T COG3420 123 IY-L-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRDLRY 195 (408)
T ss_pred EE-E-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhheee
Confidence 74 4 4677888888877531 1123333332 222343333345777777777776554
No 32
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.14 E-value=0.033 Score=52.22 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=76.4
Q ss_pred chHHHHhhcCCCeEEEEEeeeEEEeC----ceeEeccceeeeee----cc----------ceEEecCc-------EEEee
Q 020121 47 GSLREGCRRREPLWIVFEVSGTIHLS----SYLSVSSYKTIDGR----GQ----------RIKLTGKG-------LRLKE 101 (331)
Q Consensus 47 GsLr~ai~~~~pr~Ivf~v~G~I~l~----~~l~v~sn~TI~G~----g~----------g~~i~G~g-------i~i~~ 101 (331)
-+|.+|++...|..+|.=-.|+-.-. -+|.+.+.++|.|. |. +..|.|.+ +.|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 46888998877766443234555433 25777888888885 22 22344433 44555
Q ss_pred eccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecC-CCCeeeee----cCCceEEEeccEEeccCce
Q 020121 102 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDIT----RQSTDITVSRCYFTQHDKT 169 (331)
Q Consensus 102 ~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~-~Dg~~di~----~~s~~vTiS~n~f~~h~k~ 169 (331)
+++..|+.++|+......+-||.|+ ++ +.-|.+|+|... .+|.+... ....+++|+.|.+.....+
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcC
Confidence 7888999999997743356688886 44 677899999985 56653221 1234677777776654433
No 33
>smart00656 Amb_all Amb_all domain.
Probab=97.09 E-value=0.016 Score=52.19 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=83.7
Q ss_pred cceeeeeeccceEEecCcEEEeeeccEEEeeeEEecCC----C-CCCCc-eEEcCCCceEEEeeeeeecCCCCeeeeecC
Q 020121 79 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR----G-HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 152 (331)
Q Consensus 79 sn~TI~G~g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~----~-~~~D~-I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~ 152 (331)
.|++|.+........+.+|.+.+++||.|-|.+|..+. . ...|+ +.+..++.+|=|-.|.|....-++|-...+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 37777775332223456788888999999999999752 1 11344 455546788989999987655544433222
Q ss_pred Cc------eEEEeccEEeccC-ceeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceEecc
Q 020121 153 ST------DITVSRCYFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW 218 (331)
Q Consensus 153 s~------~vTiS~n~f~~h~-k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~~n~ 218 (331)
.+ .||+.+|+|.+.. ..=++. .-.+-+.+|+|.+.....-..+. +.+.+.||||++.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r---------~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQRAPRVR---------FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCcccCCCccc---------CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 22 6999999998532 111111 11466788999887654333333 5789999999864
No 34
>PLN02176 putative pectinesterase
Probab=97.09 E-value=0.013 Score=57.46 Aligned_cols=118 Identities=13% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe--cC--------cEEEee
Q 020121 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE 101 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--G~--------gi~i~~ 101 (331)
+.+|.| |+++||++- ..+++|+-..|+-+ +.+.|. +++||.|.|..-+|. +. .+.+.
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~- 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSY- 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEE-
Confidence 445544 899999652 23444443456655 557773 689999997644443 11 24554
Q ss_pred eccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 102 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 102 ~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
+++++.+||+|++... ...-|+-+.-.++++-+.+|.|.-..|-|++- ...--..+|.|..
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 8999999999997531 11233333324688999999999888887653 2234445565553
No 35
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.96 E-value=0.089 Score=54.71 Aligned_cols=101 Identities=21% Similarity=0.464 Sum_probs=67.2
Q ss_pred CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i 97 (331)
+.+|.| ++++||++ ...|+||+=..|+-+ +.+.|. +|+||+|.|.+-+ |.+. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 445655 78889964 334665554567654 556663 6899999986443 4432 1 4
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
.+. +++++.|||+|++..+ +..-|+.+ .++++.+-+|.|....|-++
T Consensus 313 ~v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy 362 (541)
T PLN02416 313 AVS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLY 362 (541)
T ss_pred EEE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhc
Confidence 444 8999999999997542 23455555 46789999999986655553
No 36
>PLN02432 putative pectinesterase
Probab=96.92 E-value=0.14 Score=49.36 Aligned_cols=114 Identities=13% Similarity=0.213 Sum_probs=71.7
Q ss_pred CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEEe-c---C------cEEEeeeccEEEe
Q 020121 46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G---K------GLRLKECEHVIIC 108 (331)
Q Consensus 46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-G---~------gi~i~~~~NVIIr 108 (331)
.-|+++||++- ..+++++=..|+-+ +.|.| .+++||.|.+..-++. . . .+.+. ++|++.+
T Consensus 23 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~-a~~f~a~ 99 (293)
T PLN02432 23 FRKIQDAIDAVPSNNSQLVFIWVKPGIYR--EKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVL-ASDFVGR 99 (293)
T ss_pred ccCHHHHHhhccccCCceEEEEEeCceeE--EEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEE-CCCeEEE
Confidence 45788999652 22333433456543 55667 3799999997544442 1 1 14444 8999999
Q ss_pred eeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 109 NLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 109 nL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
||+|++..+...-++.+.-.++++.+.+|.|.-..|-|++- ...--..+|.|..
T Consensus 100 nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G 153 (293)
T PLN02432 100 FLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEG 153 (293)
T ss_pred eeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEe
Confidence 99999764323334444334788999999999888887642 2234445666653
No 37
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=96.78 E-value=0.14 Score=52.96 Aligned_cols=102 Identities=22% Similarity=0.409 Sum_probs=66.9
Q ss_pred CCCCCc---hHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------
Q 020121 42 SDDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G-------- 96 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g-------- 96 (331)
+.+|.| ++++||++. ..|++++=..|+-+ +.+.|. +|+||+|.|.+-+| .+. +
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445544 788999742 23555544456644 556663 69999999865444 321 1
Q ss_pred EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121 97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d 148 (331)
+.+ .+++++.|||+|++..+ ...-|+.+ .++++.+.+|.|....|-+++
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv--~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRV--GSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEe--cCCcEEEEeeeEeccCCccee
Confidence 334 38999999999998643 23345555 467899999999876666543
No 38
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.70 E-value=0.2 Score=52.16 Aligned_cols=101 Identities=20% Similarity=0.445 Sum_probs=66.2
Q ss_pred CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------c------E
Q 020121 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------G------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------g------i 97 (331)
+.+|.| ++++||++ ...|.||+=..|+-+ +.+.|. +|+||+|.|.+-+| .+. + +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 445655 88889965 223555554567644 557774 69999999865444 321 1 2
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
.+ .+++++.|||+|++..+ +..-|+.+ .+++..+.+|.|....|-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~~~G~QDTLy 368 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRV--SADQAVINRCRIDAYQDTLY 368 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEe--cCCcEEEEeeeeeeccccce
Confidence 33 37999999999997543 23344555 46889999999986655553
No 39
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.65 E-value=0.24 Score=52.72 Aligned_cols=196 Identities=18% Similarity=0.362 Sum_probs=109.4
Q ss_pred CCCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------E
Q 020121 42 SDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i 97 (331)
+.+|.| ++++||++ ...|.||+=..|+-+ +.+.|. .|+|++|.|.+-+| .+. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 455655 88999975 223544443456543 456774 58899999865444 322 1 3
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceEEEe
Q 020121 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVS 159 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~vTiS 159 (331)
.+ .+++++.|||+|++..+. ..-++-+.-.+++..+.+|.|....|-| +|+--+....-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 44 379999999999976431 1233444334788999999997554444 3333344456788
Q ss_pred ccEEeccC-----ceeee--cCCCCCCCCcceEEEEeceeecCCCCCC------------cccccCeEEEEcceEec---
Q 020121 160 RCYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGTRQRH------------PRLRFGKVHLYNNYTRN--- 217 (331)
Q Consensus 160 ~n~f~~h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~~~R~------------Pr~r~G~~hv~NN~~~n--- 217 (331)
+|.|.... ++.+- |..+ .+...-+.||+|.+.....-. |--.+..+-+.|.++.+
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~---~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~ 488 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKD---PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVP 488 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCC---CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEc
Confidence 88886431 12221 1111 111235789999886643211 11123456666776653
Q ss_pred ---cccceeeeccCceEEEEceEEecCCc
Q 020121 218 ---WGIYAVCASVESQIYSQCNIYEAGQK 243 (331)
Q Consensus 218 ---~~~~~~~~~~~a~v~~e~N~f~~~~~ 243 (331)
|..+.-....+.-.+.|.+-+.+|..
T Consensus 489 P~GW~~W~~~~~~~t~~yaEY~n~GpGa~ 517 (670)
T PLN02217 489 PEGWQPWLGDFGLNTLFYSEVQNTGPGAA 517 (670)
T ss_pred CcccCccCCCCCCCceEEEEeccccCCCC
Confidence 32221122233445677777776653
No 40
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.021 Score=59.09 Aligned_cols=100 Identities=22% Similarity=0.530 Sum_probs=69.3
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeec-----------CCceEEEeccEEec
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR-----------QSTDITVSRCYFTQ 165 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~-----------~s~~vTiS~n~f~~ 165 (331)
+....++|+.++||+|........|||.++ .|+||.|+.|.|+-+.|-. -++. .+.+|+|++|+|..
T Consensus 264 ~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~I-~iksg~~~~~~~~~~~~~~i~i~~c~~~~ 341 (542)
T COG5434 264 VHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDCI-AIKSGAGLDGKKGYGPSRNIVIRNCYFSS 341 (542)
T ss_pred EeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCceE-EeecccCCcccccccccccEEEecceecc
Confidence 555679999999999997544467999997 8999999999998755543 3332 24679999999984
Q ss_pred cCceeeecCCCCCCCCcc-eEEEEeceeecCCCCCCccc
Q 020121 166 HDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRL 203 (331)
Q Consensus 166 h~k~~liG~~~~~~~d~~-~~vT~hhN~f~~~~~R~Pr~ 203 (331)
-.-+..+|+.- +++ .+|++-.|.|.+ ..|-=|+
T Consensus 342 ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 342 GHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred cccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence 33334445431 122 367777777776 4444444
No 41
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.18 Score=52.55 Aligned_cols=121 Identities=16% Similarity=0.302 Sum_probs=75.2
Q ss_pred CCCCCC---chHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-c------Cc------
Q 020121 41 LSDDGP---GSLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------KG------ 96 (331)
Q Consensus 41 l~d~g~---GsLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G------~g------ 96 (331)
.+.+|. -|.++||++. ..|.||+=..|+-+ +.+.|. .|+||+|.|.+-|+. + .|
T Consensus 245 Va~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~s 322 (553)
T PLN02708 245 VCKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNT 322 (553)
T ss_pred ECCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccce
Confidence 344554 4788998642 23555554567655 456663 699999997654443 2 12
Q ss_pred --EEEeeeccEEEeeeEEecCCCCC-CCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceE
Q 020121 97 --LRLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDI 156 (331)
Q Consensus 97 --i~i~~~~NVIIrnL~i~~g~~~~-~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~v 156 (331)
+.+ .+++++.|||+|++..+.+ .-|+-+...++.+.+.+|.|....|-+ +|+--+...+
T Consensus 323 aT~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~a 401 (553)
T PLN02708 323 ATVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAA 401 (553)
T ss_pred EEEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceE
Confidence 334 3789999999999864321 234444435788999999997655444 3333344456
Q ss_pred EEeccEEe
Q 020121 157 TVSRCYFT 164 (331)
Q Consensus 157 TiS~n~f~ 164 (331)
-+++|.|.
T Consensus 402 vfq~c~i~ 409 (553)
T PLN02708 402 VFQDCAIL 409 (553)
T ss_pred EEEccEEE
Confidence 67777775
No 42
>PLN02682 pectinesterase family protein
Probab=96.57 E-value=0.29 Score=48.53 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=68.8
Q ss_pred CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceE-Eec-----------C--------cEE
Q 020121 46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIK-LTG-----------K--------GLR 98 (331)
Q Consensus 46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~-i~G-----------~--------gi~ 98 (331)
.-|+++||++- ..|++|+=..|+-+ +.+.| .+++||.|.|..-+ |.. . .+.
T Consensus 82 f~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~ 159 (369)
T PLN02682 82 FTTIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA 159 (369)
T ss_pred ccCHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE
Confidence 34899999752 22443432346543 55777 37999999975433 321 0 144
Q ss_pred EeeeccEEEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121 99 LKECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (331)
Q Consensus 99 i~~~~NVIIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~ 164 (331)
+ .+++++.+||+|++... ...-|+.+ .++++.+.+|.|.-..|-|++- ...--..+|.|.
T Consensus 160 v-~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v--~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 227 (369)
T PLN02682 160 V-NSPYFIAKNITFKNTAPVPPPGALGKQAVALRI--SADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE 227 (369)
T ss_pred E-ECCCeEEEeeEEEcccccCCCCCCcccEEEEEe--cCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence 4 38899999999997531 12334444 4788999999998887777643 123334455554
No 43
>PLN02497 probable pectinesterase
Probab=96.55 E-value=0.35 Score=47.34 Aligned_cols=112 Identities=11% Similarity=0.228 Sum_probs=69.0
Q ss_pred chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC---------cEEEeeeccEEEee
Q 020121 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK---------GLRLKECEHVIICN 109 (331)
Q Consensus 47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~---------gi~i~~~~NVIIrn 109 (331)
-|+++||++ ...|++++=..|+-+ +.+.|. +++||.|+|..- .|... .+.+. +++++.+|
T Consensus 45 ~TIq~AIdavP~~~~~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~-a~~f~a~n 121 (331)
T PLN02497 45 TTIQSAIDSVPSNNKHWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTL-ADNTVVKS 121 (331)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcEEE--EEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEe-cCCeEEEc
Confidence 478999865 223444433456543 556673 799999997533 33311 14444 89999999
Q ss_pred eEEecCCCC--------CCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121 110 LEFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (331)
Q Consensus 110 L~i~~g~~~--------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~ 164 (331)
|+|++.... ..-++-+.-.++++-+.+|.|.-..|-|++- ...--..+|.|.
T Consensus 122 lT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 181 (331)
T PLN02497 122 ITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ 181 (331)
T ss_pred cEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence 999975321 1124444334788999999999888887643 223334555554
No 44
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.49 E-value=0.38 Score=49.81 Aligned_cols=101 Identities=20% Similarity=0.407 Sum_probs=65.1
Q ss_pred CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i 97 (331)
+.+|.| ++++||.+- ..|++|+=..|+-+ +.+.|. +|+||+|.|.+-+ |.+. | +
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 345544 889999652 23444443456554 556674 5899999975433 3321 1 3
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
.+ .+++++.|||+|++..+ ...-|+.+ .++...+.+|.|....|-++
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~G~QDTLy 338 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRS--DSDLSVFYRCAMRGYQDTLY 338 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeeeeccCCeeE
Confidence 34 37999999999997643 23344555 46789999999987666654
No 45
>PLN02665 pectinesterase family protein
Probab=96.48 E-value=0.46 Score=47.10 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=65.4
Q ss_pred CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC------------cEEEeeeccE
Q 020121 46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK------------GLRLKECEHV 105 (331)
Q Consensus 46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~------------gi~i~~~~NV 105 (331)
.-|+++||++- ..|+|++=..|+-+ +.+.|. +++|+.|.+..- .|... .+.+ .++++
T Consensus 80 f~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F 156 (366)
T PLN02665 80 FKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYF 156 (366)
T ss_pred ccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCe
Confidence 34899999752 23554543457544 567773 689999996533 33321 1344 48999
Q ss_pred EEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeee
Q 020121 106 IICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI 149 (331)
Q Consensus 106 IIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di 149 (331)
+.+||+|++... ...-|+.+ .++++.+.+|.|.-..|-|++-
T Consensus 157 ~a~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~~ 206 (366)
T PLN02665 157 MAANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCDD 206 (366)
T ss_pred EEEeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEeC
Confidence 999999997532 12344555 4678999999999888877654
No 46
>PLN02773 pectinesterase
Probab=96.47 E-value=0.43 Score=46.45 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=62.6
Q ss_pred CchHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC----------------------
Q 020121 46 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK---------------------- 95 (331)
Q Consensus 46 ~GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~---------------------- 95 (331)
.-|+++||++- ..+++||=..|+-+ +.|.|. +++||.|++..-+ |...
T Consensus 17 f~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~S 94 (317)
T PLN02773 17 YCTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGC 94 (317)
T ss_pred ccCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCc
Confidence 45789998652 22444443456544 567773 5799999875333 3211
Q ss_pred -cEEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121 96 -GLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (331)
Q Consensus 96 -gi~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d 148 (331)
.+.+ .++|++.+||+|++... ...-|+.+ .++++-+.+|.|.-..|-|+.
T Consensus 95 aTv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v--~gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 95 GTVIV-EGEDFIAENITFENSAPEGSGQAVAIRV--TADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred eEEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEe--cCccEEEEccEeecccceeEe
Confidence 1334 48999999999997632 12344455 468899999999877777653
No 47
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.44 E-value=0.32 Score=50.92 Aligned_cols=121 Identities=17% Similarity=0.426 Sum_probs=74.0
Q ss_pred CCCCCc---hHHHHhhcC-------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC------------
Q 020121 42 SDDGPG---SLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK------------ 95 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~-------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~------------ 95 (331)
+.+|.| +.++||++- ..|+||+-..|+-+ +.+.|. +|+||+|.|.+-+ |.+.
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 445654 788899652 12444443456654 557773 6899999975433 3322
Q ss_pred -cEEEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceE
Q 020121 96 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI 156 (331)
Q Consensus 96 -gi~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~v 156 (331)
.+.+. +++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-++ |+--+.-.+
T Consensus 333 aT~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 14443 79999999999985421 12334343357888999999976655553 222233446
Q ss_pred EEeccEEec
Q 020121 157 TVSRCYFTQ 165 (331)
Q Consensus 157 TiS~n~f~~ 165 (331)
-+++|.|..
T Consensus 412 vfq~C~i~~ 420 (566)
T PLN02713 412 VFQNCNLYP 420 (566)
T ss_pred EEeccEEEE
Confidence 677777753
No 48
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.43 E-value=0.49 Score=49.12 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=65.5
Q ss_pred CCCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-------------c
Q 020121 41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------G 96 (331)
Q Consensus 41 l~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-------------g 96 (331)
.+.+|.| +.++||++- ..|++|+=..|+-+ +.+.|. +++||+|.|.+-+ |.+. .
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 4445554 888999652 23444443456655 556673 6899999975433 3321 1
Q ss_pred EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 97 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
+.+. +++++.|||+|++..+ +..-|+.+ .++++-+.+|.|....|-|+
T Consensus 300 ~~v~-a~~F~a~nitf~Ntag~~~~QAVAlrv--~~Dra~fy~C~f~G~QDTLy 350 (530)
T PLN02933 300 VGVK-GKGFIAKDISFVNYAGPAKHQAVALRS--GSDHSAFYRCEFDGYQDTLY 350 (530)
T ss_pred EEEE-CCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEEeEEEecccccc
Confidence 3443 7999999999997643 22344444 47889999999987666554
No 49
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.37 E-value=0.086 Score=47.78 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=76.5
Q ss_pred ceeeeee---------ccceEEecCcEEEeeeccEEEeeeEEecCCC----CCCC-ceEEcCCCceEEEeeeeeecCCCC
Q 020121 80 YKTIDGR---------GQRIKLTGKGLRLKECEHVIICNLEFEGGRG----HDVD-GIQIKPNSRHIWIDRCSLRDYDDG 145 (331)
Q Consensus 80 n~TI~G~---------g~g~~i~G~gi~i~~~~NVIIrnL~i~~g~~----~~~D-~I~i~~~~~nVwIDHcs~s~~~Dg 145 (331)
|++|.+. +....-.+..|.+.+++||.|.|.+|..+.. ...| .+.+..++++|=|-+|-|......
T Consensus 52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence 6777763 2232334567999999999999999997621 1134 456755788999999999764333
Q ss_pred eeee------ecCCceEEEeccEEeccCc-eeeecCCCCCCCCcceEEEEeceeecCCCCCCccccc-CeEEEEcceE
Q 020121 146 LIDI------TRQSTDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT 215 (331)
Q Consensus 146 ~~di------~~~s~~vTiS~n~f~~h~k-~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~-G~~hv~NN~~ 215 (331)
++.- ......||+-+|+|.+... .=++.. -.+-+.+|+|.+.....=.++. +++-+.||||
T Consensus 132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred cccCCCCCccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 2211 1123689999999975321 112211 1577889999877777655554 4689999987
No 50
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.30 E-value=0.48 Score=49.68 Aligned_cols=120 Identities=20% Similarity=0.441 Sum_probs=74.2
Q ss_pred CCCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------
Q 020121 41 LSDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G-------- 96 (331)
Q Consensus 41 l~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g-------- 96 (331)
.+.+|.| ++++||++- ..|.+|+=..|+-+ +.+.|. +|+||+|.|.+-+ |.+. +
T Consensus 263 Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~sa 340 (572)
T PLN02990 263 VAQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTA 340 (572)
T ss_pred ECCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeee
Confidence 3445655 899999752 23444443456544 557774 6899999975433 3321 1
Q ss_pred -EEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCce
Q 020121 97 -LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTD 155 (331)
Q Consensus 97 -i~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~ 155 (331)
+.+ .+++++.|||+|++..+ +..-|+.+ .++...+.+|.|....|-++ |+--+...
T Consensus 341 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 417 (572)
T PLN02990 341 TVAI-NGDHFTAKNIGFENTAGPEGHQAVALRV--SADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAK 417 (572)
T ss_pred EEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCce
Confidence 333 37999999999997643 22344444 46789999999976555543 32223344
Q ss_pred EEEeccEEec
Q 020121 156 ITVSRCYFTQ 165 (331)
Q Consensus 156 vTiS~n~f~~ 165 (331)
.-+++|.|..
T Consensus 418 avf~~C~i~~ 427 (572)
T PLN02990 418 VVLQNCNIVV 427 (572)
T ss_pred EEEEccEEEE
Confidence 5667777753
No 51
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.23 E-value=0.55 Score=49.49 Aligned_cols=101 Identities=22% Similarity=0.414 Sum_probs=65.3
Q ss_pred CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------E
Q 020121 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i 97 (331)
+.+|.| |+++||.+- ..|++|+=..|+-+ +.+.|. +|+||+|.|.+-| |.+. + +
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 344544 899999752 23444443456554 456674 5899999986444 3332 1 3
Q ss_pred EEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 98 RLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
.+ .+++++.|||+|++..+ +..-|+.+ .+++..+.+|.|....|-|+
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v--~~Dr~~f~~c~~~G~QDTLy 417 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRV--QSDRSIFLNCRFEGYQDTLY 417 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeEEeecccccc
Confidence 33 47999999999997542 23345555 47889999999986655553
No 52
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.23 E-value=0.57 Score=48.25 Aligned_cols=153 Identities=16% Similarity=0.332 Sum_probs=87.5
Q ss_pred CCCCCc---hHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEEe-cC-----c--------E
Q 020121 42 SDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------L 97 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-G~-----g--------i 97 (331)
+.+|.| |+++||.+. ..|.+|+=..|+-+ +.+.|. +|+||+|.|.+-+|. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 344544 788999652 23444443456544 557774 689999998654443 22 1 2
Q ss_pred EEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceEEEe
Q 020121 98 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVS 159 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~vTiS 159 (331)
.+ .+++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-++ |+--+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 378999999999976431 23344444357889999999986655553 222233446677
Q ss_pred ccEEeccC-----ceeeecCCCCCCCCcceEEEEeceeecCCCC
Q 020121 160 RCYFTQHD-----KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ 198 (331)
Q Consensus 160 ~n~f~~h~-----k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~ 198 (331)
+|.|.... ++.+--.+-.. .+...-+.||+|.+.....
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~~ 401 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASSD 401 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCCc
Confidence 77776421 12222111000 0111246788887765443
No 53
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.14 Score=49.21 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=98.0
Q ss_pred EEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCC-----CCeeeeecCCceEEEeccEEeccCceee
Q 020121 97 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDKTML 171 (331)
Q Consensus 97 i~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~-----Dg~~di~~~s~~vTiS~n~f~~h~k~~l 171 (331)
+.|+.++|+.|-.+--.. .--+-++.|. .+.||+|...+|.... +..|.+..++.+|=|-+|.|..|....-
T Consensus 95 ~~iki~sNkTivG~g~~a--~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~ 171 (345)
T COG3866 95 ITIKIGSNKTIVGSGADA--TLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNAS 171 (345)
T ss_pred EEEeeccccEEEeecccc--EEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccc
Confidence 666656666554332110 0124678887 6899999999998655 3345777788999999999998655311
Q ss_pred ecCCCCC--CCCcceEEEEeceeecCCCCC---------CcccccCeEEEEcceEeccccceeeeccCceEEEEceEEec
Q 020121 172 IGADPSH--VGDRCIRVTIHHCLFDGTRQR---------HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240 (331)
Q Consensus 172 iG~~~~~--~~d~~~~vT~hhN~f~~~~~R---------~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~~ 240 (331)
--+.|.. +.....-||+..|+|+++.-- ++.-..-++.+-+|||.|.-.++=..|-+ .+-+-+|||+.
T Consensus 172 ~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-~vHvyNNYy~~ 250 (345)
T COG3866 172 GSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-MVHVYNNYYEG 250 (345)
T ss_pred ccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEee-EEEEecccccc
Confidence 1111211 111224799999999765422 22211113678899999875544333433 45566999995
Q ss_pred CCcceeeeeeeccccCccccCccEEEEcCCeEEcCcc
Q 020121 241 GQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQ 277 (331)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~n~~~ng~~ 277 (331)
-++-.+..-+ .....+..+.|.|.++..
T Consensus 251 ~~~~g~a~~i---------G~~AkiyvE~NyF~~~~~ 278 (345)
T COG3866 251 NPKFGVAITI---------GTSAKIYVENNYFENGSE 278 (345)
T ss_pred CcccceEEee---------ccceEEEEecceeccCCC
Confidence 4432211000 012346667788877643
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.17 E-value=0.56 Score=48.85 Aligned_cols=116 Identities=16% Similarity=0.353 Sum_probs=72.4
Q ss_pred chHHHHhhcC---C----CeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-------------cEEEeee
Q 020121 47 GSLREGCRRR---E----PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKEC 102 (331)
Q Consensus 47 GsLr~ai~~~---~----pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-------------gi~i~~~ 102 (331)
-++++||.+- . .|+||+=..|+-+ +.+.|. +|+||+|.|.+-+ |.+. .+.+ .+
T Consensus 236 ~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~ 312 (538)
T PLN03043 236 TTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SG 312 (538)
T ss_pred cCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-EC
Confidence 4888899642 1 1455544456654 557673 6999999986443 3322 1344 37
Q ss_pred ccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee-----------------eeecCCceEEEeccEEe
Q 020121 103 EHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDITVSRCYFT 164 (331)
Q Consensus 103 ~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~-----------------di~~~s~~vTiS~n~f~ 164 (331)
++++.|||+|++..+. ..-|+-+.-.++...+.+|.|....|-|+ |+--+.--+-+++|.|.
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~ 392 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLY 392 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEE
Confidence 9999999999975421 22344443357789999999976655543 32233445677888776
Q ss_pred c
Q 020121 165 Q 165 (331)
Q Consensus 165 ~ 165 (331)
.
T Consensus 393 ~ 393 (538)
T PLN03043 393 A 393 (538)
T ss_pred E
Confidence 4
No 55
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.08 E-value=0.58 Score=49.05 Aligned_cols=99 Identities=18% Similarity=0.345 Sum_probs=63.3
Q ss_pred CCCCc---hHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------------cEE
Q 020121 43 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------------GLR 98 (331)
Q Consensus 43 d~g~G---sLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------------gi~ 98 (331)
.+|.| +.++||.+ +..|.||+=..|+-+ +.+.|. .|+||+|.|.+-+| .+. .+.
T Consensus 264 ~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~ 341 (565)
T PLN02468 264 KDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA 341 (565)
T ss_pred CCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee
Confidence 34544 78888865 223444544566644 556664 58999999864443 321 133
Q ss_pred EeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCe
Q 020121 99 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL 146 (331)
Q Consensus 99 i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~ 146 (331)
+. +++++.|||+|++..+ +..-|+.+ .+++..+.+|.|....|-+
T Consensus 342 v~-~~~f~a~~itf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTL 389 (565)
T PLN02468 342 VF-GKGFMARDMGFRNTAGPIKHQAVALMS--SADLSVFYRCTMDAFQDTL 389 (565)
T ss_pred EE-CCCeEEEEEEEEeCCCCCCCceEEEEE--cCCcEEEEEeEEEeccchh
Confidence 43 7899999999997543 23345554 4788999999997655554
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.03 E-value=0.11 Score=53.91 Aligned_cols=104 Identities=21% Similarity=0.409 Sum_probs=67.4
Q ss_pred CCCCCc---hHHHHhhcC------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c-------
Q 020121 42 SDDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G------- 96 (331)
Q Consensus 42 ~d~g~G---sLr~ai~~~------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g------- 96 (331)
+.+|.| |.++||++. ..|++|+=..|+-+ +.+.|. +|+|++|.|.+-|+ .+. +
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 445655 899999752 12444443456644 456663 69999999864444 321 1
Q ss_pred -EEEeeeccEEEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121 97 -LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (331)
Q Consensus 97 -i~i~~~~NVIIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d 148 (331)
+.+ .+++++.|||+|++..+. ..-|+-+.-.+++..+.+|.|....|-+++
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~ 358 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV 358 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc
Confidence 334 389999999999976431 123444433578899999999988777754
No 57
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.03 E-value=0.034 Score=49.60 Aligned_cols=102 Identities=25% Similarity=0.414 Sum_probs=56.1
Q ss_pred ceeeeeeccceEEe--cCcEEEeeeccEEEeeeEEecCCCCCCCceEE-------------------cCCCceEEEeeee
Q 020121 80 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQI-------------------KPNSRHIWIDRCS 138 (331)
Q Consensus 80 n~TI~G~g~g~~i~--G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i-------------------~~~~~nVwIDHcs 138 (331)
+++|.|.+.. .. ..++.+..+.|+.|+|++++... .++|.+ +.++.+++++.|.
T Consensus 98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 5777776322 21 34677777899999999999742 233332 2111223334444
Q ss_pred eecCCCCeeeeecCCceEEEeccEEec-cCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 020121 139 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (331)
Q Consensus 139 ~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~ 197 (331)
+....++ + ..+.++++++||.|.. ...+..+-... .+++.+|.|.+|.
T Consensus 173 ~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD 221 (225)
T ss_dssp EESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred ccCCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence 4555555 2 2233678888888775 44444332211 3666666776664
No 58
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=95.99 E-value=0.66 Score=48.28 Aligned_cols=96 Identities=20% Similarity=0.410 Sum_probs=63.1
Q ss_pred chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------EEEeeeccE
Q 020121 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------LRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i~i~~~~NV 105 (331)
-++++||.+ +..|.||+=..|+-+ +.+.|. +|+||+|.|.+-+ |.+. + +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 578889965 234555554556544 446663 6999999975443 3322 1 333 48999
Q ss_pred EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
+.|||+|++..+ ...-|+.+ .++++-+.+|.|....|-++
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v--~~D~~~fy~C~~~G~QDTLy 364 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRV--DSDQSAFYRCSMEGYQDTLY 364 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEcceeecccccce
Confidence 999999997642 23445555 47889999999987666554
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=95.98 E-value=0.68 Score=48.75 Aligned_cols=142 Identities=18% Similarity=0.368 Sum_probs=84.2
Q ss_pred chHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------EEEeeeccE
Q 020121 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i~i~~~~NV 105 (331)
-++++||++. ..|.||+=..|+-+ +.+.|. .|++|+|.|.+-|| .+. | +.+ .++++
T Consensus 288 ~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F 364 (587)
T PLN02313 288 TTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERF 364 (587)
T ss_pred ccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCe
Confidence 4788899652 23544444456544 556674 58999999864443 321 1 233 37899
Q ss_pred EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCe-----------------eeeecCCceEEEeccEEec
Q 020121 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~-----------------~di~~~s~~vTiS~n~f~~ 165 (331)
+.|||+|++..+ +..-|+.+ .++...+-+|.|....|-+ +|+--+...+-+++|.|..
T Consensus 365 ~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~~ 442 (587)
T PLN02313 365 LARDITFQNTAGPSKHQAVALRV--GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINA 442 (587)
T ss_pred EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEccEEEE
Confidence 999999997643 23345555 4788999999997554443 3333344456788888864
Q ss_pred cC-----ceeee--cCCCCCCCCcceEEEEeceeecCC
Q 020121 166 HD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGT 196 (331)
Q Consensus 166 h~-----k~~li--G~~~~~~~d~~~~vT~hhN~f~~~ 196 (331)
.. ++.+- |..+. +...-+.||+|.+...
T Consensus 443 r~~~~~~~~~iTAqgr~~~---~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 443 RRPNSGQKNMVTAQGRSDP---NQNTGIVIQNCRIGGT 477 (587)
T ss_pred ecCCCCCcceEEecCCCCC---CCCceEEEEecEEecC
Confidence 21 12222 22221 1123477888877543
No 60
>PLN02916 pectinesterase family protein
Probab=95.92 E-value=0.8 Score=47.25 Aligned_cols=96 Identities=17% Similarity=0.316 Sum_probs=62.9
Q ss_pred chHHHHhhcC-------CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-------------cEEEeee
Q 020121 47 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------------GLRLKEC 102 (331)
Q Consensus 47 GsLr~ai~~~-------~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-------------gi~i~~~ 102 (331)
-|+++||++- ..|++|+=..|+-+ +.+.|. +|+||+|.|..-++ .+. .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 4789999642 23555543456544 556674 58999999754443 321 1333 37
Q ss_pred ccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 103 EHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 103 ~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
++++.|||+|++..+ ...-|+.+ .++...+.+|.|....|-++
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv--~~D~a~fy~C~f~G~QDTLy 322 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRV--SSDLSVFYRCSFKGYQDTLF 322 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEeccCceeE
Confidence 899999999997642 23345555 46888999999987666654
No 61
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=95.91 E-value=0.92 Score=47.74 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=62.9
Q ss_pred chHHHHhhcC----CCeEEEEEeeeEEEeCceeEec---cceeeeeeccceE-EecC-----c--------EEEeeeccE
Q 020121 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-----G--------LRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~G~-----g--------i~i~~~~NV 105 (331)
-++++||++- ..|+||+=..|+-+-. .+.|. +|+||+|.|.+-+ |.+. + +.+ .++++
T Consensus 285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 285 KTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred ccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 4788899652 2355554445665421 36664 6899999986444 4332 1 333 37999
Q ss_pred EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
+.|||+|++..+ +..-|+.+ .+++..+.+|.|....|-++
T Consensus 363 ~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~G~QDTLy 405 (587)
T PLN02484 363 IARDMTFENWAGPAKHQAVALRV--GADHAVVYRCNIIGYQDTLY 405 (587)
T ss_pred EEEeeEEEECCCCCCCceEEEEe--cCCcEEEEeeeEeccCcccc
Confidence 999999997643 23345555 46789999999976655553
No 62
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.84 E-value=0.41 Score=46.18 Aligned_cols=111 Identities=16% Similarity=0.333 Sum_probs=64.9
Q ss_pred chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccce-EEecC-------------cEEEeeeccE
Q 020121 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRI-KLTGK-------------GLRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~-~i~G~-------------gi~i~~~~NV 105 (331)
-++++||+. ...+.+|+-..|+-+ +.|.|. +++||+|.+..- .|.+. .|.+. ++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence 468889874 223454554566655 557774 599999997533 34432 15554 8999
Q ss_pred EEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 106 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 106 IIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
+++||+|++..+ ...-||.+. ++++.+.+|.|.-..|-++.- ....-+.+|+|..
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG 147 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence 999999997432 234567764 578999999999888877643 2345567787774
No 63
>PLN02304 probable pectinesterase
Probab=95.72 E-value=0.21 Score=49.65 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=72.5
Q ss_pred chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEE-ecC-------------cEEEeeeccE
Q 020121 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKL-TGK-------------GLRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i-~G~-------------gi~i~~~~NV 105 (331)
-|+++||++- ..|++|+=..|+-+ +.|.| .+++||+|+|..-++ ... .+.+. ++++
T Consensus 88 ~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~-a~~F 164 (379)
T PLN02304 88 TTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVF-ASNF 164 (379)
T ss_pred cCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEE-CCCe
Confidence 4899999752 23454443456544 56777 379999999754333 211 13343 7999
Q ss_pred EEeeeEEecCCCC------CCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 106 IICNLEFEGGRGH------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 106 IIrnL~i~~g~~~------~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
+.|||+|++.... ..-|+-+.-.++++.+.+|.|.-..|-|++-. ..--+.+|.|..
T Consensus 165 ~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~---gR~Yf~~CyIeG 227 (379)
T PLN02304 165 IAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR---GRHYFKDCYIQG 227 (379)
T ss_pred EEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC---CCEEEEeeEEcc
Confidence 9999999975311 12234443347889999999999999887532 234456777764
No 64
>PLN02314 pectinesterase
Probab=95.62 E-value=0.18 Score=52.92 Aligned_cols=98 Identities=16% Similarity=0.312 Sum_probs=63.6
Q ss_pred chHHHHhhc----CCCeEEEEEeeeEEEeCceeEec---cceeeeeeccceEE-ecC-----c--------EEEeeeccE
Q 020121 47 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV 105 (331)
Q Consensus 47 GsLr~ai~~----~~pr~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~G~-----g--------i~i~~~~NV 105 (331)
-++++||++ +..|+||+=..|+-+ +.+.|. .|+|++|.|.+-+| .+. | +.+ .++++
T Consensus 291 ~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F 367 (586)
T PLN02314 291 KTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGF 367 (586)
T ss_pred cCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCe
Confidence 488999965 223555544456644 556664 58999999754433 321 1 334 47999
Q ss_pred EEeeeEEecCCCC-CCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 106 IICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 106 IIrnL~i~~g~~~-~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
+.|||+|++..+. ..-|+-+.-+++...+.+|.|....|-|+
T Consensus 368 ~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy 410 (586)
T PLN02314 368 IAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY 410 (586)
T ss_pred EEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence 9999999976432 12344443357889999999987766664
No 65
>PLN02634 probable pectinesterase
Probab=94.95 E-value=0.68 Score=45.80 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=70.0
Q ss_pred chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeeccceEEe------------cC--------cEEE
Q 020121 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT------------GK--------GLRL 99 (331)
Q Consensus 47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~------------G~--------gi~i 99 (331)
-|+++||++- ..|++++=..|+-+ +.+.| .+++||.|.|..-++. |. .+.+
T Consensus 69 ~TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V 146 (359)
T PLN02634 69 RSVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV 146 (359)
T ss_pred cCHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE
Confidence 4889999752 22443433456543 55666 3689999997654443 10 1334
Q ss_pred eeeccEEEeeeEEecCCC--------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 100 KECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 100 ~~~~NVIIrnL~i~~g~~--------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
.+++++.+||+|++... ...-|+.+ .++++-+.+|.|.-..|-|++- ...--..+|.|..
T Consensus 147 -~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v--~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIeG 214 (359)
T PLN02634 147 -YANYFTARNISFKNTAPAPMPGMQGWQAVAFRI--SGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIEG 214 (359)
T ss_pred -ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEe--cCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEcc
Confidence 37899999999997532 12334455 4678999999999888887643 2234445666653
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=94.77 E-value=1.3 Score=44.76 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=42.7
Q ss_pred eeccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecC---------CceEEEeccEEe
Q 020121 101 ECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ---------STDITVSRCYFT 164 (331)
Q Consensus 101 ~~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~---------s~~vTiS~n~f~ 164 (331)
.+++++.+||+|+.... ...-|+.+ .++++.+.+|.|.-..|-|+.-..+ ...--+.+|.|.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv--~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe 281 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE 281 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE--cCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence 47999999999997632 12334445 4678999999999888888753111 123455667766
Q ss_pred c
Q 020121 165 Q 165 (331)
Q Consensus 165 ~ 165 (331)
.
T Consensus 282 G 282 (422)
T PRK10531 282 G 282 (422)
T ss_pred e
Confidence 4
No 67
>PLN02671 pectinesterase
Probab=94.65 E-value=0.87 Score=45.05 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=70.2
Q ss_pred chHHHHhhcC----CCeEEEEEeeeEEEeCceeEe---ccceeeeeecc---ceEEecC---------c----------E
Q 020121 47 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQ---RIKLTGK---------G----------L 97 (331)
Q Consensus 47 GsLr~ai~~~----~pr~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~---g~~i~G~---------g----------i 97 (331)
-|+++||++- ..+++|+=..|+-+ +.+.| .+++||+|.|. ...|... + +
T Consensus 72 ~TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 72 LTVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred cCHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 4789999652 22443433456543 56777 36899999863 3344411 1 3
Q ss_pred EEeeeccEEEeeeEEecCCC-------CCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEec
Q 020121 98 RLKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ 165 (331)
Q Consensus 98 ~i~~~~NVIIrnL~i~~g~~-------~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~ 165 (331)
.+ .+++++.+||+|++... ...-|+.+ .++++-+.+|.|.-..|-|++-. ..--+.+|.|..
T Consensus 150 ~v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~CyIeG 218 (359)
T PLN02671 150 TI-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLDET---GSHYFYQCYIQG 218 (359)
T ss_pred EE-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEeCC---CcEEEEecEEEE
Confidence 33 37899999999997521 12345555 46889999999998888887542 234456676664
No 68
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=0.3 Score=50.69 Aligned_cols=98 Identities=23% Similarity=0.384 Sum_probs=69.9
Q ss_pred CcEEEeeeccEEEeeeEEecCCCCCCCceEEcC-----------CCceEEEeeeeeecCCCCeeeee---cCCceEEEec
Q 020121 95 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKP-----------NSRHIWIDRCSLRDYDDGLIDIT---RQSTDITVSR 160 (331)
Q Consensus 95 ~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~-----------~~~nVwIDHcs~s~~~Dg~~di~---~~s~~vTiS~ 160 (331)
.||.+..|+||.|.+.+|..+ +|+|.+.. -+++|||-||-|..+.-++..-. .+-.+|++.+
T Consensus 288 DG~d~~sc~NvlI~~~~fdtg----DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved 363 (542)
T COG5434 288 DGFDPGSCSNVLIEGCRFDTG----DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVED 363 (542)
T ss_pred CccccccceeEEEeccEEecC----CceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEe
Confidence 378999999999999999964 46665531 25789999999998877775432 3457999999
Q ss_pred cEEeccCceeeecCCCCCCCCcceEEEEeceeecCCC
Q 020121 161 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 197 (331)
Q Consensus 161 n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~ 197 (331)
|.|.+.+.+.-|....... ...-+|+|+.+...+..
T Consensus 364 ~~~~~~d~GLRikt~~~~g-G~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 364 CVMDNTDRGLRIKTNDGRG-GGVRNIVFEDNKMRNVK 399 (542)
T ss_pred eeeccCcceeeeeeecccc-eeEEEEEEecccccCcc
Confidence 9999876666555433221 11237778777766654
No 69
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=93.08 E-value=0.21 Score=50.28 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=14.4
Q ss_pred ceEEEeeeeeecC------CCCeeeeec-----CCceEEEeccEEec
Q 020121 130 RHIWIDRCSLRDY------DDGLIDITR-----QSTDITVSRCYFTQ 165 (331)
Q Consensus 130 ~nVwIDHcs~s~~------~Dg~~di~~-----~s~~vTiS~n~f~~ 165 (331)
.+-+||||-|... .-|.|-+.. ...+.+|++|+|..
T Consensus 164 ~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~ 210 (425)
T PF14592_consen 164 NYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFER 210 (425)
T ss_dssp ---EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEE
T ss_pred cCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhh
Confidence 3558999999731 223333321 13578888888875
No 70
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=92.72 E-value=0.92 Score=40.76 Aligned_cols=65 Identities=26% Similarity=0.247 Sum_probs=42.6
Q ss_pred ceEEEeccEEeccCc--eeeecCCCCCCCCcceEEEEeceeecCCCCCCccc--ccC-------eEEEEcceEeccc
Q 020121 154 TDITVSRCYFTQHDK--TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFG-------KVHLYNNYTRNWG 219 (331)
Q Consensus 154 ~~vTiS~n~f~~h~k--~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~--r~G-------~~hv~NN~~~n~~ 219 (331)
++|-|=+|.|.+-.- ..|+|...+...+...+|-+|||.|-.+. .+|.+ ..| ..-+.||+|+..-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tG-tn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTG-TNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCC-cCCCCceeeeEEeccccccEEEeeeecccc
Confidence 467888888887543 34568765555555558999999997653 23433 322 2368888888653
No 71
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=87.38 E-value=3.1 Score=40.87 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=67.1
Q ss_pred eeEeccceeeeeeccceEEecC--cEEEeeeccEEEeeeEEecCCC----CCCCceEEcCCCceEEEeeeeeecCCCCee
Q 020121 74 YLSVSSYKTIDGRGQRIKLTGK--GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI 147 (331)
Q Consensus 74 ~l~v~sn~TI~G~g~g~~i~G~--gi~i~~~~NVIIrnL~i~~g~~----~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~ 147 (331)
.|.+....|-++.- ...|.|. ||.+.++.++.|+.-+|.+-.. ..++||.+. ++..+-|--++++...|+++
T Consensus 99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 35555555555542 2234443 5778889999999999987532 347999998 88899999999999999985
Q ss_pred eeecCCceEEEeccEEeccCce
Q 020121 148 DITRQSTDITVSRCYFTQHDKT 169 (331)
Q Consensus 148 di~~~s~~vTiS~n~f~~h~k~ 169 (331)
. .-|..-+++.|.|++-.++
T Consensus 177 ~--~~S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 177 S--DTSQHNVFKGNRFRDLRYG 196 (408)
T ss_pred E--cccccceecccchhheeee
Confidence 3 3477888899988875443
No 72
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=83.25 E-value=7.8 Score=36.81 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=45.8
Q ss_pred eeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeeecCC
Q 020121 101 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 175 (331)
Q Consensus 101 ~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~liG~~ 175 (331)
+++|..|.|.+|..|.. + +. .++||-+++|.|.|-+= +++ ++++.|.+|.|..-.+..+|.+.
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~ 79 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSN 79 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeC
Confidence 47899999999996542 2 33 57899999999987431 222 56788888888887777777655
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=82.24 E-value=23 Score=33.76 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=32.2
Q ss_pred CceEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCcccccCeEEEEcceEecc
Q 020121 153 STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNW 218 (331)
Q Consensus 153 s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~ 218 (331)
+.||||.++.+.+-. +|+.. .++||-+|.+... .|+.-.-.+.+.|.-+.+.
T Consensus 174 ~eNVtVyDS~i~GEY----LgW~S-------kNltliNC~I~g~---QpLCY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 174 CENVTVYDSVINGEY----LGWNS-------KNLTLINCTIEGT---QPLCYCDNLVLENCTMIDT 225 (277)
T ss_pred CCceEEEcceEeeeE----EEEEc-------CCeEEEEeEEecc---CccEeecceEEeCcEeecc
Confidence 567777777666432 23211 1688888877654 4666555677888877654
No 74
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=75.88 E-value=50 Score=32.54 Aligned_cols=146 Identities=11% Similarity=0.141 Sum_probs=86.7
Q ss_pred CchHHHHhhcC-----CCeEEEEEeeeEEEeCceeEec-cc--eeeeeeccc--eEEe-----c---C--cEE-------
Q 020121 46 PGSLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS-SY--KTIDGRGQR--IKLT-----G---K--GLR------- 98 (331)
Q Consensus 46 ~GsLr~ai~~~-----~pr~Ivf~v~G~I~l~~~l~v~-sn--~TI~G~g~g--~~i~-----G---~--gi~------- 98 (331)
.-|.++||++. ..|.+++=..|+-+ +.+.|. ++ +|+.|.+.. -+.. + . +..
T Consensus 94 f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~--e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss 171 (405)
T COG4677 94 FTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ--ETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSS 171 (405)
T ss_pred hHHHHHHHhhhcccCCCceEEEEEccceec--eeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccc
Confidence 45788888652 24554443344433 446665 44 888888643 1111 1 1 111
Q ss_pred -------------EeeeccEEEeeeEEecCCC--CC---CCceEEcCCCceEEEeeeeeecCCCCeeeeecCCc------
Q 020121 99 -------------LKECEHVIICNLEFEGGRG--HD---VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQST------ 154 (331)
Q Consensus 99 -------------i~~~~NVIIrnL~i~~g~~--~~---~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~------ 154 (331)
+...++.++|||+|+.... .. --++-+...++.+.+..|.+....|-++.-..+..
T Consensus 172 ~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn 251 (405)
T COG4677 172 RSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN 251 (405)
T ss_pred hhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccC
Confidence 1125789999999996432 11 13555554678899999999988888865433211
Q ss_pred ---eEEEeccEEeccCceeeecCCCCCCCCcceEEEEeceeecCCCCCCccc
Q 020121 155 ---DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL 203 (331)
Q Consensus 155 ---~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN~f~~~~~R~Pr~ 203 (331)
.--+.||.|..| --+++|+. .+-||+|-|.-+..|.|-.
T Consensus 252 ~~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~ 293 (405)
T COG4677 252 RQPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQE 293 (405)
T ss_pred cchhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcc
Confidence 122446776654 23455654 4567888888888887554
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=72.45 E-value=21 Score=32.23 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=43.6
Q ss_pred CCceEEEeeeeeecC-CCCeeee-----ecCCceEEEeccEEeccCceeeec--CCCCCCCC-cceEEEEeceeecCCCC
Q 020121 128 NSRHIWIDRCSLRDY-DDGLIDI-----TRQSTDITVSRCYFTQHDKTMLIG--ADPSHVGD-RCIRVTIHHCLFDGTRQ 198 (331)
Q Consensus 128 ~~~nVwIDHcs~s~~-~Dg~~di-----~~~s~~vTiS~n~f~~h~k~~liG--~~~~~~~d-~~~~vT~hhN~f~~~~~ 198 (331)
.+++|+|.|+.|... ....++. ..+-.+..|.+|.|..-....+.- ........ .+...++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 467999999999763 2222221 123457789999999755443331 11111111 23456678889999987
Q ss_pred CC
Q 020121 199 RH 200 (331)
Q Consensus 199 R~ 200 (331)
|.
T Consensus 112 r~ 113 (198)
T PF08480_consen 112 RK 113 (198)
T ss_pred cc
Confidence 73
No 76
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=70.40 E-value=21 Score=37.05 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=36.5
Q ss_pred cEEEeeeccEEEeeeEEecCCC---CCCCceEEcCCCceEEEeeeeeecCCCCeee
Q 020121 96 GLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID 148 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~---~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~d 148 (331)
.+.+. +++++.|||+|++..+ +..-|+.+ .++++-+.+|.|.-..|-+++
T Consensus 264 T~~v~-~~~F~a~nitf~Ntag~~~~QAvAl~v--~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 264 TFTIT-GDGFIARDIGFKNAAGPKGEQAIALSI--TSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eEEEE-CCCeEEEeeEEEECCCCCCCceEEEEe--cCCcEEEEcceeecccchhee
Confidence 35564 7899999999997643 23445555 478899999999877776653
No 77
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=64.39 E-value=37 Score=35.51 Aligned_cols=92 Identities=20% Similarity=0.344 Sum_probs=42.4
Q ss_pred cEEEeeec----cEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCc--e
Q 020121 96 GLRLKECE----HVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK--T 169 (331)
Q Consensus 96 gi~i~~~~----NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k--~ 169 (331)
.+.+.+.. +..|+|+++-+.+-+..|||.+. ..+. |++|=| +..|..|-+.+ .+++|++|-+...+- .
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~nS~--i~dcF~-h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpi 418 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-PNST--IRDCFI-HVNDDAIKLYH--SNVSVSNTVIWKNENGPI 418 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B---TT-E--EEEEEE-EESS-SEE--S--TTEEEEEEEEEE-SSS-S
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCcccc-CCCe--eeeeEE-EecCchhheee--cCcceeeeEEEecCCCCe
Confidence 35666444 47899999998887789999997 3333 466644 44444445543 799999998875332 3
Q ss_pred eeecCCCCCCCC-cceEEEEeceee
Q 020121 170 MLIGADPSHVGD-RCIRVTIHHCLF 193 (331)
Q Consensus 170 ~liG~~~~~~~d-~~~~vT~hhN~f 193 (331)
+-+|+....+.+ .--++.+.|+.+
T Consensus 419 iq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 419 IQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp EE--CS---EEEEEEEEEEEEE---
T ss_pred EEeeccccccCceEEeeeEEEeeee
Confidence 445665322211 012566666633
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.55 E-value=16 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=20.8
Q ss_pred ceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEe
Q 020121 122 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT 164 (331)
Q Consensus 122 ~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~ 164 (331)
||.+. .+++..|..|.++...||+ .+. .+.+-+|..|.|.
T Consensus 1 GI~l~-~s~~~~i~~N~i~~~~~GI-~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLE-SSSNNTLENNTASNNSYGI-YLT-DSSNNTLSNNTAS 40 (44)
T ss_pred CEEEE-ecCCCEEECcEEeCCCCEE-EEE-eCCCCEeECCEEE
Confidence 34554 4444556666666666644 332 3455555555554
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=62.62 E-value=67 Score=29.67 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=53.6
Q ss_pred eEEEeCceeEeccceeeeeeccc-----eEEecC--------cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEE
Q 020121 67 GTIHLSSYLSVSSYKTIDGRGQR-----IKLTGK--------GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIW 133 (331)
Q Consensus 67 G~I~l~~~l~v~sn~TI~G~g~g-----~~i~G~--------gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVw 133 (331)
|+..+++++.|.+.-|.+|.... ..+.+. -|.|. +-..|+|+.|-. ...|||.+. + ...
T Consensus 14 ~~~~~~~~i~V~aG~~fDG~~k~~~~~~~~~~~~~q~e~q~~vF~le--~GatlkNvIiG~---~~~dGIHC~-G--~Ct 85 (215)
T PF03211_consen 14 GTVTVSSTIVVKAGEVFDGGMKRYDRGPSACGDGGQSEDQDPVFILE--DGATLKNVIIGA---NQADGIHCK-G--SCT 85 (215)
T ss_dssp -EEEESS-EEE-TTEEEEEEEEEEEECCCTT--SSSGSC---SEEEE--TTEEEEEEEETS---S-TT-EEEE-S--CEE
T ss_pred CceEcccCeEECCCceEeCCeeEEccCCCccCCCCcCCccceEEEec--CCCEEEEEEEcC---CCcCceEEc-C--CEE
Confidence 45566666777666666664221 111111 16665 456677777743 245888887 3 566
Q ss_pred EeeeeeecCCCCeeeeecCCceEEEeccEEec-cCcee
Q 020121 134 IDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTM 170 (331)
Q Consensus 134 IDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~-h~k~~ 170 (331)
|+++-+.+..+..+.++..+..++|..+-+.+ .+|..
T Consensus 86 l~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~ 123 (215)
T PF03211_consen 86 LENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVF 123 (215)
T ss_dssp EEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEE
T ss_pred EEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEE
Confidence 78888888777777887655577777776653 34443
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=46.00 E-value=50 Score=21.77 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=29.4
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeec
Q 020121 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD 141 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~ 141 (331)
||.+..+++..|++=+|... .|||.+. .+++-.|..|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46777777777888788753 4699997 56666677777764
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=42.06 E-value=85 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=23.2
Q ss_pred EEEEeceeecCCCCCCcccccCeEEEEcceEeccccceeeeccCceEEEEceEEe
Q 020121 185 RVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE 239 (331)
Q Consensus 185 ~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~~~~a~v~~e~N~f~ 239 (331)
+++||.+.|.+...=.=..+ +...+...+|+.-. -++..+...++.+-.+.|+
T Consensus 146 ~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~~~~lsVk~C~Fe 198 (386)
T PF01696_consen 146 NTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRGKSKLSVKKCVFE 198 (386)
T ss_pred eEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCCcceEEeeheeee
Confidence 55666666665444333333 33344444443321 2333333344444444444
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=34.24 E-value=1.5e+02 Score=27.33 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=48.8
Q ss_pred cEEEeeeccEEEeeeEEecCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeeeecCCceEEEeccEEeccCceeee
Q 020121 96 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI 172 (331)
Q Consensus 96 gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di~~~s~~vTiS~n~f~~h~k~~li 172 (331)
||...+ +..|+|+-++.. ..||+++...+..+.|.-+.+....|..|... +...++|++-... +.+-|+
T Consensus 77 GIHC~G--~Ctl~NVwwedV---cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~--d~GKl~ 145 (215)
T PF03211_consen 77 GIHCKG--SCTLENVWWEDV---CEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAE--DFGKLY 145 (215)
T ss_dssp -EEEES--CEEEEEEEESS----SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEE--EEEEEE
T ss_pred ceEEcC--CEEEEEEEeccc---ceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEc--CCCEEE
Confidence 455553 677888888864 46999997333389999999999999999885 4567999984333 444444
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=30.48 E-value=3.3e+02 Score=25.60 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=44.4
Q ss_pred cCcEEEeeeccEEEeeeEEecCCCCCCCceEEc-----CCCceEEEeeeeeecCCCCeeeee--cCCceEEEeccEEecc
Q 020121 94 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIK-----PNSRHIWIDRCSLRDYDDGLIDIT--RQSTDITVSRCYFTQH 166 (331)
Q Consensus 94 G~gi~i~~~~NVIIrnL~i~~g~~~~~D~I~i~-----~~~~nVwIDHcs~s~~~Dg~~di~--~~s~~vTiS~n~f~~h 166 (331)
|.++.|. +.+..|+|-+|.+.. .+||.+. ....++.|.-+.+.....|+ ++. .......|.+|+|.+.
T Consensus 114 g~Gi~Ie-ss~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 114 GTGIWIE-SSSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTGI-SISDNAAPVENKIENNIIENN 188 (246)
T ss_pred ceEEEEe-cCCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcCe-EEEcccCCccceeeccEEEeC
Confidence 3468887 459999999999743 4567553 12345557777776655554 332 1122347788888876
Q ss_pred Ccee
Q 020121 167 DKTM 170 (331)
Q Consensus 167 ~k~~ 170 (331)
..++
T Consensus 189 ~~Gi 192 (246)
T PF07602_consen 189 NIGI 192 (246)
T ss_pred CcCe
Confidence 5543
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=30.38 E-value=69 Score=17.54 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.2
Q ss_pred eEEEeeeeeecCCC
Q 020121 131 HIWIDRCSLRDYDD 144 (331)
Q Consensus 131 nVwIDHcs~s~~~D 144 (331)
+++|.+|.|.....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 34444444444433
No 85
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=28.76 E-value=2.9e+02 Score=23.38 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=38.7
Q ss_pred eccEEEeeeEEecCCC------------CCCCceEEcCCCceEEEeeeeeec---CCCCeeeeecCCceE-EEecc
Q 020121 102 CEHVIICNLEFEGGRG------------HDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDI-TVSRC 161 (331)
Q Consensus 102 ~~NVIIrnL~i~~g~~------------~~~D~I~i~~~~~nVwIDHcs~s~---~~Dg~~di~~~s~~v-TiS~n 161 (331)
..++-|||..++.|+- .+.+++.|. .....+|--|.=++ +..|.||+..+...| ||.|.
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~-~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIP-PGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred CccEEEEccEeccCccccCCCcCCEeCccccCceEec-CCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 3478888888887641 124567775 34566787787654 578889987655555 55543
No 86
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=28.59 E-value=46 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=13.4
Q ss_pred CceEEcCCCceEEEeeeee
Q 020121 121 DGIQIKPNSRHIWIDRCSL 139 (331)
Q Consensus 121 D~I~i~~~~~nVwIDHcs~ 139 (331)
+-|.+.-.+..|||+||+=
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4455533678999999983
No 87
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=26.82 E-value=7e+02 Score=25.86 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHhhcCCCeEEEEEeeeEEEeCceeEeccceeeeee-----ccceEEecCc---EEEeeeccEEEeeeEEe-------
Q 020121 49 LREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGR-----GQRIKLTGKG---LRLKECEHVIICNLEFE------- 113 (331)
Q Consensus 49 Lr~ai~~~~pr~Ivf~v~G~I~l~~~l~v~sn~TI~G~-----g~g~~i~G~g---i~i~~~~NVIIrnL~i~------- 113 (331)
|+...+...-.. +|--+|+-+ ...|.|.|+++|+|. ...+.|.|.. |.+. ++--+-+|+++
T Consensus 39 ~~~l~e~~~e~L-IFlH~G~~e-~~~i~I~sdvqiiGAs~~dia~sVvle~~~~t~l~F~--~~AY~Gy~Tvkf~~d~~h 114 (625)
T KOG1777|consen 39 LRFLDENDEEKL-IFLHEGTHE-TETIRITSDVQIIGASPSDIATSVVLEGRHATTLEFQ--ESAYVGYVTVKFEPDQEH 114 (625)
T ss_pred hhhcccccccce-EEEEecccc-ceEEEEcCCeeEeccCCccceeeEEEecccccEEEEe--ecceEEEEEEEecccccc
Q ss_pred --------------------------------------------cCCCCCCCceEEcCCCceEEEeeeeeecCCCCeeee
Q 020121 114 --------------------------------------------GGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI 149 (331)
Q Consensus 114 --------------------------------------------~g~~~~~D~I~i~~~~~nVwIDHcs~s~~~Dg~~di 149 (331)
.-...+.-|+.+...+..+ ++||.|+...+..+.+
T Consensus 115 ~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~a~P~~~~c~isDceNvglyvTd~a~g~-yEh~ei~~NalA~vwv 193 (625)
T KOG1777|consen 115 HAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGEAEPEIKLCAISDCENVGLYVTDHAQGI-YEHCEISRNALAGVWV 193 (625)
T ss_pred ceeEEEeeccCCCcccccccccCCCccCcccccCCccCcceeecccccCcceeEEEEeccccc-eecchhccccccceee
Q ss_pred ecCCceEEEeccEEeccCceeeecCCCCCCCCcceEEEEece--eecCCCCCCcccccCeEEEEcc
Q 020121 150 TRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHC--LFDGTRQRHPRLRFGKVHLYNN 213 (331)
Q Consensus 150 ~~~s~~vTiS~n~f~~h~k~~liG~~~~~~~d~~~~vT~hhN--~f~~~~~R~Pr~r~G~~hv~NN 213 (331)
+..-+=|+.+|.+..-.-+.+ +||||- +|.+|.-..-|+..-.+.+.=|
T Consensus 194 -knha~p~~R~~~ih~G~dvGi--------------ftf~hg~Gy~e~cd~~qnlisg~eVkf~an 244 (625)
T KOG1777|consen 194 -KNHAFPTMRNCTIHHGRDVGI--------------FTFEHGQGYFESCDIHQNLISGIEVKFRAN 244 (625)
T ss_pred -ccccChhhhhceeecCCccce--------------EEeccCcCCCccchHHHhhhcceEEEeecc
No 88
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=25.33 E-value=60 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=13.4
Q ss_pred CceEEcCCCceEEEeeeee
Q 020121 121 DGIQIKPNSRHIWIDRCSL 139 (331)
Q Consensus 121 D~I~i~~~~~nVwIDHcs~ 139 (331)
+-|.+.-.+..|||+|++=
T Consensus 14 ~~i~V~Y~G~pV~Iq~vde 32 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 4455533678999999983
No 89
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=24.66 E-value=59 Score=23.75 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=12.9
Q ss_pred CceEEcCCCceEEEeeee
Q 020121 121 DGIQIKPNSRHIWIDRCS 138 (331)
Q Consensus 121 D~I~i~~~~~nVwIDHcs 138 (331)
+-|.+.-.+..|||+||+
T Consensus 14 ~~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 14 EMINVTYKGVPVYIEHVD 31 (58)
T ss_pred cceEEEECCEEEEEEEEc
Confidence 335554367899999997
No 90
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=21.05 E-value=89 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.7
Q ss_pred CCceEEecCCCCCCCchHHHHhhcCCCeEEE
Q 020121 32 HGPVYFVTNLSDDGPGSLREGCRRREPLWIV 62 (331)
Q Consensus 32 gg~vv~Vt~l~d~g~GsLr~ai~~~~pr~Iv 62 (331)
-|..++||+-+| ||.|+....++-+.
T Consensus 52 dGDlVTIts~~d-----L~~A~~~~~~~~l~ 77 (81)
T cd06401 52 DGDLITIFDSSD-----LSFAIQCSRILKLT 77 (81)
T ss_pred CCCEEEeccHHH-----HHHHHhcCcceEEE
Confidence 478999999998 99999888876543
Done!