Query 020122
Match_columns 331
No_of_seqs 201 out of 309
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 6.4E-54 1.4E-58 420.9 12.3 304 26-331 29-357 (415)
2 PRK05467 Fe(II)-dependent oxyg 99.9 6.4E-21 1.4E-25 177.3 14.0 156 153-331 2-178 (226)
3 smart00702 P4Hc Prolyl 4-hydro 99.8 1.6E-19 3.5E-24 159.0 13.2 162 151-330 1-178 (178)
4 PLN00052 prolyl 4-hydroxylase; 99.5 1.1E-13 2.3E-18 134.4 13.1 169 150-330 53-251 (310)
5 PHA02813 hypothetical protein; 99.3 5.6E-12 1.2E-16 123.3 10.9 155 151-327 5-178 (354)
6 KOG1971 Lysyl hydroxylase [Pos 99.2 6.6E-12 1.4E-16 124.8 2.5 113 96-216 290-415 (415)
7 COG3128 PiuC Uncharacterized i 99.2 1.8E-10 4E-15 104.6 10.1 160 152-331 3-181 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.0 2.5E-10 5.5E-15 91.3 4.8 84 238-330 3-100 (100)
9 PHA02869 C4L/C10L-like gene fa 99.0 1.4E-09 3E-14 108.2 11.0 82 228-327 98-187 (418)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 1.7E-07 3.7E-12 74.8 4.8 79 236-330 4-97 (98)
11 KOG1591 Prolyl 4-hydroxylase a 98.2 1.2E-05 2.5E-10 78.0 11.2 158 150-330 96-283 (289)
12 PF12851 Tet_JBP: Oxygenase do 97.4 0.00034 7.5E-09 62.8 5.9 72 245-330 83-170 (171)
13 PF09859 Oxygenase-NA: Oxygena 97.2 0.00084 1.8E-08 60.4 6.6 82 237-327 65-168 (173)
14 PF05721 PhyH: Phytanoyl-CoA d 97.1 0.0096 2.1E-07 51.4 11.6 168 152-323 5-210 (211)
15 TIGR02408 ectoine_ThpD ectoine 96.9 0.017 3.6E-07 55.2 13.0 170 151-327 28-245 (277)
16 TIGR01762 chlorin-enz chlorina 96.9 0.028 6.1E-07 54.3 14.1 38 293-330 208-248 (288)
17 TIGR02466 conserved hypothetic 96.4 0.091 2E-06 48.6 13.6 89 235-325 97-194 (201)
18 PF13661 2OG-FeII_Oxy_4: 2OG-F 96.4 0.0044 9.4E-08 47.5 4.0 40 238-279 15-66 (70)
19 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.1 0.09 2E-06 46.5 11.6 154 152-326 1-192 (194)
20 PF13759 2OG-FeII_Oxy_5: Putat 95.6 0.051 1.1E-06 44.0 6.9 87 237-325 3-98 (101)
21 COG3826 Uncharacterized protei 94.8 0.052 1.1E-06 50.1 5.2 82 236-326 126-229 (236)
22 PF03336 Pox_C4_C10: Poxvirus 93.8 0.16 3.4E-06 50.6 6.5 81 230-326 76-164 (339)
23 PRK15401 alpha-ketoglutarate-d 93.3 0.67 1.4E-05 43.4 9.6 157 147-326 14-209 (213)
24 PLN03001 oxidoreductase, 2OG-F 89.5 0.82 1.8E-05 43.7 6.1 69 246-330 132-212 (262)
25 PLN02276 gibberellin 20-oxidas 89.4 1.2 2.6E-05 44.4 7.3 77 238-330 210-302 (361)
26 PLN00417 oxidoreductase, 2OG-F 88.9 1.2 2.5E-05 44.3 6.9 78 238-330 207-300 (348)
27 PLN02904 oxidoreductase 88.5 1.4 3E-05 44.0 7.1 77 238-330 212-304 (357)
28 PLN02365 2-oxoglutarate-depend 87.7 1.5 3.3E-05 42.4 6.7 72 245-329 164-247 (300)
29 PLN02947 oxidoreductase 87.5 1.9 4.2E-05 43.3 7.4 69 246-330 241-321 (374)
30 PLN02984 oxidoreductase, 2OG-F 87.0 2.2 4.7E-05 42.4 7.4 77 238-330 204-297 (341)
31 COG3751 EGL-9 Predicted prolin 86.4 2.7 5.7E-05 40.5 7.4 87 238-331 140-240 (252)
32 PLN02216 protein SRG1 86.4 2 4.4E-05 42.7 6.9 78 238-330 214-307 (357)
33 PLN02156 gibberellin 2-beta-di 86.0 2.4 5.1E-05 42.0 7.1 78 238-330 182-277 (335)
34 PLN03178 leucoanthocyanidin di 85.7 2.3 5E-05 42.3 6.9 69 246-330 227-307 (360)
35 PLN02912 oxidoreductase, 2OG-F 85.5 2.4 5.3E-05 42.0 6.9 77 238-330 201-293 (348)
36 PLN02750 oxidoreductase, 2OG-F 85.3 2.3 4.9E-05 42.0 6.6 79 238-330 197-291 (345)
37 PLN02485 oxidoreductase 84.9 1.4 3.1E-05 43.1 4.9 71 246-330 204-286 (329)
38 PTZ00273 oxidase reductase; Pr 84.5 2.4 5.1E-05 41.3 6.2 77 238-330 181-274 (320)
39 PLN02299 1-aminocyclopropane-1 84.4 2.7 5.8E-05 41.3 6.6 78 238-330 162-255 (321)
40 PLN02515 naringenin,2-oxogluta 83.4 2.9 6.3E-05 41.7 6.4 79 238-330 199-293 (358)
41 PLN02254 gibberellin 3-beta-di 83.2 2.5 5.5E-05 42.1 6.0 78 238-330 214-307 (358)
42 PLN02639 oxidoreductase, 2OG-F 83.0 3.8 8.2E-05 40.4 7.0 78 238-330 194-287 (337)
43 PLN02704 flavonol synthase 82.9 3.7 8.1E-05 40.4 6.9 69 246-330 215-295 (335)
44 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 82.4 1.9 4.2E-05 39.4 4.4 82 238-328 100-194 (195)
45 KOG3710 EGL-Nine (EGLN) protei 82.2 6.6 0.00014 37.7 7.9 83 235-329 144-237 (280)
46 PLN02758 oxidoreductase, 2OG-F 82.1 4.4 9.6E-05 40.4 7.2 79 238-330 215-309 (361)
47 PLN02403 aminocyclopropanecarb 79.6 6.5 0.00014 38.4 7.2 78 238-330 157-251 (303)
48 PLN02393 leucoanthocyanidin di 79.5 6.4 0.00014 39.2 7.3 78 238-330 217-310 (362)
49 PLN02997 flavonol synthase 77.5 8.3 0.00018 38.0 7.3 77 238-330 187-279 (325)
50 PF05118 Asp_Arg_Hydrox: Aspar 77.2 6.9 0.00015 34.6 6.1 93 217-327 61-157 (163)
51 KOG3200 Uncharacterized conser 75.8 5.1 0.00011 37.0 4.9 96 149-257 10-109 (224)
52 COG5285 Protein involved in bi 75.2 14 0.0003 36.5 8.0 97 234-331 114-232 (299)
53 PLN03002 oxidoreductase, 2OG-F 74.4 6.1 0.00013 38.9 5.5 81 238-330 186-283 (332)
54 TIGR00568 alkb DNA alkylation 74.2 6.7 0.00014 35.3 5.3 65 235-313 96-168 (169)
55 KOG0143 Iron/ascorbate family 73.5 7.9 0.00017 38.2 6.0 78 238-329 180-273 (322)
56 PHA02866 Hypothetical protein; 68.5 57 0.0012 32.5 10.5 151 150-326 5-164 (333)
57 PHA02923 hypothetical protein; 63.2 21 0.00045 35.4 6.4 77 232-327 66-142 (315)
58 PF10637 Ofd1_CTDD: Oxoglutara 52.2 29 0.00064 33.6 5.4 147 124-277 8-189 (266)
59 KOG3889 Predicted gamma-butyro 43.0 37 0.00081 33.7 4.5 80 193-277 136-223 (371)
60 TIGR02409 carnitine_bodg gamma 42.2 61 0.0013 32.1 6.1 31 247-277 185-221 (366)
61 PRK13916 plasmid segregation p 40.7 14 0.00031 30.2 1.1 30 54-91 18-47 (97)
62 TIGR02410 carnitine_TMLD trime 40.0 71 0.0015 31.7 6.2 31 247-277 177-213 (362)
63 cd00250 CAS_like Clavaminic ac 39.0 55 0.0012 30.4 4.9 32 246-277 93-130 (262)
64 KOG3959 2-Oxoglutarate- and ir 37.8 47 0.001 32.3 4.2 102 141-256 62-174 (306)
65 PF11265 Med25_VWA: Mediator c 37.3 45 0.00098 31.7 4.1 71 202-274 25-107 (226)
66 KOG4459 Membrane-associated pr 33.3 12 0.00026 38.9 -0.5 62 259-329 369-432 (471)
67 PF02668 TauD: Taurine catabol 32.5 34 0.00074 30.9 2.4 32 247-278 95-132 (258)
68 PF02311 AraC_binding: AraC-li 30.9 1.6E+02 0.0035 23.0 5.9 32 296-327 43-75 (136)
69 KOG3844 Predicted component of 28.9 7E+02 0.015 26.2 13.3 167 148-331 34-217 (476)
70 PF04378 RsmJ: Ribosomal RNA s 24.4 3.5E+02 0.0077 25.9 7.8 60 152-212 160-226 (245)
71 PRK13264 3-hydroxyanthranilate 23.0 6E+02 0.013 23.4 9.7 99 201-325 7-106 (177)
72 TIGR03404 bicupin_oxalic bicup 22.3 3E+02 0.0066 27.7 7.2 74 236-326 69-142 (367)
73 PF11230 DUF3029: Protein of u 21.7 1.4E+02 0.0031 31.4 4.8 81 70-159 1-98 (487)
74 PF09864 MliC: Membrane-bound 20.6 1.1E+02 0.0023 23.0 2.8 44 235-278 7-53 (72)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-54 Score=420.90 Aligned_cols=304 Identities=35% Similarity=0.495 Sum_probs=292.9
Q ss_pred CcccccccCCCCCCCCCCccccccCCCChhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCCchhhhhhhhhHHHHHH
Q 020122 26 PASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQR 105 (331)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~r~~~~~~~~~~~~ 105 (331)
.++.++.+.||.+|++++|+|+ +|+|+++..++||.|+|+.+|++.++.|+|||.++|.+|+|..++.++..++.|+++
T Consensus 29 ~ni~ld~~~~~fq~l~g~~~dv-~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~ 107 (415)
T KOG1971|consen 29 LNITLDHRSRIFQNLNGAYEDV-VLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYREL 107 (415)
T ss_pred hcccccCcCcccccCcCCcCCe-eEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchh
Confidence 3446899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccccccCCCCccChhHHHHhhhhcHHHHhhhhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccc
Q 020122 106 IISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRI 185 (331)
Q Consensus 106 I~~~Y~~lhpdly~l~~e~yl~p~f~~ai~~~~~~~~~~~~~e~~P~Vy~fpvfs~~fC~~LIee~E~f~~ws~~s~~~i 185 (331)
|.++||+|+-..|.++|+.++.|+|..+...++++.|+++.+|+.|++|+||||++.||++++.++|+++.|+.++++++
T Consensus 108 ~~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i 187 (415)
T KOG1971|consen 108 IKSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVI 187 (415)
T ss_pred hhhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccceecccc--ChHHHHHHHHHHhhhhhhh---------------------hccCccCCCCCcccceeEEEEc
Q 020122 186 MRPNTMNKFGAVLDDF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYG 242 (331)
Q Consensus 186 ~rpn~mN~ygvvLdd~--Gl~~~~~~Ll~~~l~Pl~~---------------------~lfp~~~g~~Lds~~~FVVrY~ 242 (331)
+|||+|++|+++++++ ++..+..+|.++|+.||++ .+||.+++..|++|++|++.|.
T Consensus 188 ~~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~ 267 (415)
T KOG1971|consen 188 TRPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESS 267 (415)
T ss_pred cCChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeecc
Confidence 9999999999999999 9999999999999999999 9999999999999999999996
Q ss_pred CC-CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCCCcCCccCCcce
Q 020122 243 MD-RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGS 321 (331)
Q Consensus 243 ~~-~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~HeglpVTsG~ 321 (331)
.+ .|+++++|+|++++|+|+||++.|+||+++|.+..|+.|.++ .+..|+|+++|.+|+|+||+|.|.|++.++++|+
T Consensus 268 ~~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~ 346 (415)
T KOG1971|consen 268 EDNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQ 346 (415)
T ss_pred CcCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCC
Confidence 65 999999999999999999999999999999999999999876 6788999999999999999999999999999999
Q ss_pred -eEEEEEeecC
Q 020122 322 -RVNLLVWCRR 331 (331)
Q Consensus 322 -Ry~LV~W~rs 331 (331)
|-+++.||++
T Consensus 347 ~~~nv~~~~~~ 357 (415)
T KOG1971|consen 347 PCPNVYWFPIS 357 (415)
T ss_pred CCCceeeehhH
Confidence 7788888764
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.85 E-value=6.4e-21 Score=177.25 Aligned_cols=156 Identities=22% Similarity=0.353 Sum_probs=112.2
Q ss_pred EEEe-cCCCHHHHHHHHHHHHhcccccccCCc-cccccCCCCccceeccccChHHHHHHHHHHhhh--hhhhhccCccCC
Q 020122 153 IYTF-EMLQPRFCEMLLSEVENFERWVHDTRF-RIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIR--PISKVFFPEVGG 228 (331)
Q Consensus 153 Vy~f-pvfs~~fC~~LIee~E~f~~ws~~s~~-~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~~l~--Pl~~~lfp~~~g 228 (331)
++.+ .|||+++|+++|+.+|+- .|..|... ....+...||..+..++. +...+...+...+. |+ |. .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l----~~---s 72 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPL----FF---S 72 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCch----hh---h
Confidence 4555 599999999999999984 47543321 212245577777776666 65433333334553 32 21 1
Q ss_pred CCCc--ccceeEEEEcCCCCCCccccccCC-------------ceeEEEeec--ccccccceEEeccccccccccccccc
Q 020122 229 STLD--SHHGFVVEYGMDRDVELGFHVDDS-------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSE 291 (331)
Q Consensus 229 ~~Ld--s~~~FVVrY~~~~d~~L~~H~D~S-------------evTlNI~Ln--~dFeGGgl~F~~~~c~~~v~~~~~~~ 291 (331)
..+. .+...+.||.+++ ++++|+|++ .+|++|+|| ++|+||+|.|......
T Consensus 73 a~lp~~i~~~~f~rY~~G~--~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~---------- 140 (226)
T PRK05467 73 AALPRKIHPPLFNRYEGGM--SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE---------- 140 (226)
T ss_pred hccccccccceEEEECCCC--ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc----------
Confidence 1121 1223469999886 999999974 589999998 5799999999864322
Q ss_pred ccccccCCCcEEEEecCCCCcCCccCCcceeEEEEEeecC
Q 020122 292 EILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR 331 (331)
Q Consensus 292 e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rs 331 (331)
..+++++|.+|+|++..+|+|.|||+|+||+++.|+||
T Consensus 141 --~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S 178 (226)
T PRK05467 141 --HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQS 178 (226)
T ss_pred --EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHH
Confidence 24689999999999999999999999999999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.82 E-value=1.6e-19 Score=158.99 Aligned_cols=162 Identities=25% Similarity=0.362 Sum_probs=108.3
Q ss_pred CeEEEec-CCCHHHHHHHHHHHHhcccccccCCcccccc----CCCCccceeccccChHHHHHHHHHHhhhhhhhhccCc
Q 020122 151 PGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRP----NTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPE 225 (331)
Q Consensus 151 P~Vy~fp-vfs~~fC~~LIee~E~f~~ws~~s~~~i~rp----n~mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~~~lfp~ 225 (331)
|+|+.++ +||+++|+.||++++..+. ........+.+ ..++.....+++-.-+.+.+.+. +.+..+ ++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~-~~i~~~----~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIR-QRLADF----LGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCCCCCHHHHHHH-HHHHHH----HCC
Confidence 7899995 9999999999999998653 21111111111 11222233343321112222222 223332 221
Q ss_pred cCCCCCcccceeEEEEcCCCCCCccccccCC--------ceeEEEeecccccccceEEeccccccccccccccccccccc
Q 020122 226 VGGSTLDSHHGFVVEYGMDRDVELGFHVDDS--------EVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYS 297 (331)
Q Consensus 226 ~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~S--------evTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~ 297 (331)
..+.........+++|.+++ .+.+|+|.+ .+|+.|+||++++||+|.|....+.+ ...+.
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g~--~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~~----------~~~v~ 142 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPGG--HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLMV----------CATVK 142 (178)
T ss_pred CchhhccCcceEEEEECCCC--cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCcc----------ceEEe
Confidence 11111233456689999865 999999965 69999999999999999999876411 22468
Q ss_pred CCCcEEEEecC---CCCcCCccCCcceeEEEEEeec
Q 020122 298 HVPGYAVLHRG---RHRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 298 ~~~G~AllH~G---rh~HeglpVTsG~Ry~LV~W~r 330 (331)
|++|.+|+|+. +++|+|.||++|+||++++|+|
T Consensus 143 P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 143 PKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 99999999997 5999999999999999999987
No 4
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.52 E-value=1.1e-13 Score=134.38 Aligned_cols=169 Identities=19% Similarity=0.267 Sum_probs=106.9
Q ss_pred CCeEEEec-CCCHHHHHHHHHHHHhccccccc----CCccccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhccC
Q 020122 150 IPGIYTFE-MLQPRFCEMLLSEVENFERWVHD----TRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 224 (331)
Q Consensus 150 ~P~Vy~fp-vfs~~fC~~LIee~E~f~~ws~~----s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~~~lfp 224 (331)
.|.||.++ |||+++|+.||+..+.-.+-+.. ++.... ...+..+++.++.-. +.....+. +.|+-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~-s~~RTS~~~~l~~~~-dpvv~~I~-~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVM-SEVRTSSGMFLDKRQ-DPVVSRIE-ERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcccc-CCCEEecceeecCCC-CHHHHHHH-HHHHHHh--CCC
Confidence 69999995 99999999999998753221110 010000 122334555554322 23333332 2333332 112
Q ss_pred ccCCCCCcccceeEEEEcCCCCCCccccccC------------CceeEEEeecccccccceEEeccccccccccc----c
Q 020122 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDD------------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTE----T 288 (331)
Q Consensus 225 ~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~------------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~----~ 288 (331)
.-. .-..-|++|++++ .+.+|+|- ...|+.++||+..+||+|.|............ .
T Consensus 128 ~~~-----~E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 128 EEN-----AENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred ccc-----CcceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 111 1123389999987 89999992 24899999999999999999975210000000 0
Q ss_pred cccccccccCCCcEEEEecCC---------CCcCCccCCcceeEEEEEeec
Q 020122 289 QSEEILDYSHVPGYAVLHRGR---------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 289 ~~~e~~~y~~~~G~AllH~Gr---------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-.+.-+.++|++|.||+|..- -+|+|.||++|++|++..|+|
T Consensus 201 c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~ 251 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251 (310)
T ss_pred hhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeee
Confidence 001235679999999999984 599999999999999999987
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.34 E-value=5.6e-12 Score=123.31 Aligned_cols=155 Identities=13% Similarity=0.157 Sum_probs=107.8
Q ss_pred CeEEEecCCCHHHH----HHHHHHHHh-cccccccCC------ccccccCCCCccceeccccChHHHHHHHHHHhhhhhh
Q 020122 151 PGIYTFEMLQPRFC----EMLLSEVEN-FERWVHDTR------FRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPIS 219 (331)
Q Consensus 151 P~Vy~fpvfs~~fC----~~LIee~E~-f~~ws~~s~------~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~ 219 (331)
.++.+..+|+...- +.|+.+++- --.|....- ...+.++.+|+-.|++++. +.+|+++.. +|.+-.
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~-~Lp~~l 81 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK-KLLLSF 81 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-hhHHHh
Confidence 46677788888833 344455541 013533111 1245567788999999988 777777554 332211
Q ss_pred hhccCccCCCCCcccceeEEEEcCCCCCCccccccC--------CceeEEEeecccccccceEEeccccccccccccccc
Q 020122 220 KVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSE 291 (331)
Q Consensus 220 ~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~ 291 (331)
. -++-+...+++.+.+| +||.+|+ .|.+|+|. |.+||.++||+.++||+|.|.-..+.
T Consensus 82 ~-~~~lv~~V~vnerirf-yrY~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t---------- 147 (354)
T PHA02813 82 E-FPQKISDIILDNTITL-IKYEKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT---------- 147 (354)
T ss_pred c-CCccceeEEEcceEEE-EEECCCc--ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc----------
Confidence 0 0111112456777776 9999988 89999884 56899999999999999999954322
Q ss_pred ccccccCCCcEEEEecCCCCcCCccCCcceeEEEEE
Q 020122 292 EILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLV 327 (331)
Q Consensus 292 e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~ 327 (331)
+..+|.+|||.++..|+|.+|++|++|+|++
T Consensus 148 -----sI~~g~dlLFdh~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 148 -----IFSTKNDVLFDKTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred -----eEeecceEEEecccccCCcEeccCeEEEEEE
Confidence 1238999999999999999999999999975
No 6
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.6e-12 Score=124.84 Aligned_cols=113 Identities=19% Similarity=0.406 Sum_probs=90.6
Q ss_pred hhhhHHHHHHHhh-cCC--CCCc-cccccC------CCCccChhHHHHhhhhcHHHHhhhhcccCCeEEEecCCCHHHHH
Q 020122 96 VQRHKEYRQRIIS-NYQ--PLHR-ELFTMH------APSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCE 165 (331)
Q Consensus 96 ~~~~~~~~~~I~~-~Y~--~lhp-dly~l~------~e~yl~p~f~~ai~~~~~~~~~~~~~e~~P~Vy~fpvfs~~fC~ 165 (331)
+.|+.++|+++.. .|. ++++ ++|+|. -+.|||++|.++.+.+ .++.++||+|||||++ .+|+
T Consensus 290 l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~ 361 (415)
T KOG1971|consen 290 LSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCD 361 (415)
T ss_pred ecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHH
Confidence 6788999999887 887 6776 999983 2899999999998876 5778999999999999 9999
Q ss_pred HHHHHHHhcccccccCCccccccCC---CCccceeccccChHHHHHHHHHHhhh
Q 020122 166 MLLSEVENFERWVHDTRFRIMRPNT---MNKFGAVLDDFGLETMLDKLMNDFIR 216 (331)
Q Consensus 166 ~LIee~E~f~~ws~~s~~~i~rpn~---mN~ygvvLdd~Gl~~~~~~Ll~~~l~ 216 (331)
+|++++|+|++|++|.+...+.-.+ --...+.+.++|++..|.+++..|++
T Consensus 362 el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 362 ELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred HHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 9999999999999988765322111 01122346669999999999998874
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.16 E-value=1.8e-10 Score=104.61 Aligned_cols=160 Identities=19% Similarity=0.307 Sum_probs=99.8
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCcc-ccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhccCc-cCC
Q 020122 152 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFR-IMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPE-VGG 228 (331)
Q Consensus 152 ~Vy~fp-vfs~~fC~~LIee~E~f~~ws~~s~~~-i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~~~lfp~-~~g 228 (331)
..+.+| |||++.|.++-+.++.- .|+.|.--. -.-+...||-.+.-+. .++..+..++-+-+.-. .++|.- ...
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A-~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~~-plff~aALp~ 79 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA-EWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTAH-PLFFAAALPR 79 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc-cccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHhc-hhHHHhhccc
Confidence 455665 99999999988888764 576654321 1112334443333222 22222222222111110 011210 011
Q ss_pred CCCcccceeEEEEcCCCCCCccccccCC--------------ceeEEEeec--ccccccceEEecccccccccccccccc
Q 020122 229 STLDSHHGFVVEYGMDRDVELGFHVDDS--------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSEE 292 (331)
Q Consensus 229 ~~Lds~~~FVVrY~~~~d~~L~~H~D~S--------------evTlNI~Ln--~dFeGGgl~F~~~~c~~~v~~~~~~~e 292 (331)
..+... +-||..+. .|++|.|+. .+++|..|+ +||+||+|...+.....
T Consensus 80 t~~~P~---Fn~Y~eg~--~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h---------- 144 (229)
T COG3128 80 TCLPPL---FNRYQEGD--FFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGNH---------- 144 (229)
T ss_pred ccCCch---hhhccCCC--cccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccce----------
Confidence 111111 36787766 899999853 367777776 69999999999876532
Q ss_pred cccccCCCcEEEEecCCCCcCCccCCcceeEEEEEeecC
Q 020122 293 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRR 331 (331)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rs 331 (331)
.++.+.|..|++|+.-+|++.|||+|.|+..+.|.||
T Consensus 145 --~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qs 181 (229)
T COG3128 145 --RVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQS 181 (229)
T ss_pred --EEeccCCCEEEcccccceeccccccCceEEEeeehHH
Confidence 3467889999999999999999999999999999987
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.03 E-value=2.5e-10 Score=91.30 Aligned_cols=84 Identities=32% Similarity=0.504 Sum_probs=62.7
Q ss_pred EEEEcCCCCCCccccccC-----CceeEEEeecc-c--ccccceEEeccc----ccccccccccccccccccCCCcEEEE
Q 020122 238 VVEYGMDRDVELGFHVDD-----SEVTLNVCLGR-E--FSGGELFFRGVR----CDKHVNTETQSEEILDYSHVPGYAVL 305 (331)
Q Consensus 238 VVrY~~~~d~~L~~H~D~-----SevTlNI~Ln~-d--FeGGgl~F~~~~----c~~~v~~~~~~~e~~~y~~~~G~All 305 (331)
+.+|.++. .+.+|.|. ..+|+.++||+ + ++||+|.|.... +...+ +.....|++|.+|+
T Consensus 3 ~~~y~~G~--~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~-------~~~~~~p~~g~~v~ 73 (100)
T PF13640_consen 3 LNRYPPGG--FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREV-------EDFDIVPKPGRLVI 73 (100)
T ss_dssp EEEEETTE--EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEE-------GGGSEE-BTTEEEE
T ss_pred EEEECcCC--EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEE-------EeccccCCCCEEEE
Confidence 56787765 99999999 35899999983 3 799999999753 11100 01122299999999
Q ss_pred ecC-CCCcCCccC-CcceeEEEEEeec
Q 020122 306 HRG-RHRHGARAT-TSGSRVNLLVWCR 330 (331)
Q Consensus 306 H~G-rh~HeglpV-TsG~Ry~LV~W~r 330 (331)
|++ ..+|++.|| ..|+|++++.|..
T Consensus 74 F~~~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 74 FPSDNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EESCTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EeCCCCeecCcccCCCCCEEEEEEEEC
Confidence 999 899999999 9999999999974
No 9
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.03 E-value=1.4e-09 Score=108.18 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCCCcccceeEEEEcCCCCCCccccccC--------CceeEEEeecccccccceEEecccccccccccccccccccccCC
Q 020122 228 GSTLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHV 299 (331)
Q Consensus 228 g~~Lds~~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~ 299 (331)
..+++.+.+| +||++|+ .|.+|.|. |.+||.|+||+.++||+|.|.-..+ ..+.|+
T Consensus 98 ~V~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~-------------~sI~pk 161 (418)
T PHA02869 98 SVTVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNN-------------TSVKLK 161 (418)
T ss_pred eEEEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCC-------------ceEecC
Confidence 3467788776 9999988 99999996 5699999999999999999996222 124789
Q ss_pred CcEEEEecCCCCcCCccCCcceeEEEEE
Q 020122 300 PGYAVLHRGRHRHGARATTSGSRVNLLV 327 (331)
Q Consensus 300 ~G~AllH~Grh~HeglpVTsG~Ry~LV~ 327 (331)
+| |||.++..|+|.+|++|.+|++..
T Consensus 162 sg--LLFdh~l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 162 TD--HLFDKTIEHESITVESGRKCVALF 187 (418)
T ss_pred CC--eEeccccccCCcEeecCeEEEEEE
Confidence 99 999999999999999999999864
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.48 E-value=1.7e-07 Score=74.76 Aligned_cols=79 Identities=25% Similarity=0.252 Sum_probs=57.8
Q ss_pred eeEEEEc-CCCCCCccccccC--CceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC---
Q 020122 236 GFVVEYG-MDRDVELGFHVDD--SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (331)
Q Consensus 236 ~FVVrY~-~~~d~~L~~H~D~--SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (331)
..+.+|. ++.+..+++|.|. +.+|++++ .+||||.|....+. ..+.+.++..++..|.
T Consensus 4 ~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~~------------~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 4 LRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGEW------------VDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp EEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTEE------------EE----TTCEEEEEBHHHH
T ss_pred EEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheeccccccc------------cCccCccceeeeeceeeee
Confidence 3478999 6678899999999 99999998 78999999975432 2345677788888887
Q ss_pred ---------CCcCCccCCcceeEEEEEeec
Q 020122 310 ---------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|++.++++|.|++++.|+|
T Consensus 68 ~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 68 ILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp HHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 899999999999999999986
No 11
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=98.21 E-value=1.2e-05 Score=78.02 Aligned_cols=158 Identities=22% Similarity=0.293 Sum_probs=97.9
Q ss_pred CCeEEEe-cCCCHHHHHHHHHHHH-hcccccc-cCCccccccCC--CCccceeccccChHHHHHHHHHHhhhhhhhhccC
Q 020122 150 IPGIYTF-EMLQPRFCEMLLSEVE-NFERWVH-DTRFRIMRPNT--MNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 224 (331)
Q Consensus 150 ~P~Vy~f-pvfs~~fC~~LIee~E-~f~~ws~-~s~~~i~rpn~--mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~~~lfp 224 (331)
.|.|+.+ .|+++++|+.||+..+ ....+.- ..+....-... +.--|.-+.+ +-.. ....+++.|+-++. +|
T Consensus 96 ~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~-~~~~-~~~~i~~ri~~~T~--l~ 171 (289)
T KOG1591|consen 96 DPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD-GASP-VVSRIEQRIADLTG--LP 171 (289)
T ss_pred CCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC-CCCH-HHHHHHHHHHhccC--CC
Confidence 4889999 5999999999999766 3333211 00000000000 1111223443 2221 12223333333221 11
Q ss_pred ccCCCCCcccceeEEEEcCCCCCCccccccCCc----------------eeEEEeecccccccceEEecccccccccccc
Q 020122 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE----------------VTLNVCLGREFSGGELFFRGVRCDKHVNTET 288 (331)
Q Consensus 225 ~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~Se----------------vTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~ 288 (331)
--.+-.| =|++|+.++ +..+|+|-.. -|+-++|++.=+||+|.|....-.
T Consensus 172 ~e~~E~l-----qVlnYg~Gg--~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~------- 237 (289)
T KOG1591|consen 172 VENGESL-----QVLNYGLGG--HYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMK------- 237 (289)
T ss_pred cccCccc-----eEEEecCCc--cccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCCc-------
Confidence 1112111 289999877 9999988431 378899999999999999987642
Q ss_pred cccccccccCCCcEEEEecC---------CCCcCCccCCcceeEEEEEeec
Q 020122 289 QSEEILDYSHVPGYAVLHRG---------RHRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 289 ~~~e~~~y~~~~G~AllH~G---------rh~HeglpVTsG~Ry~LV~W~r 330 (331)
..+.|++|.|+++-- +-.|+|.||..|.||+-..|+|
T Consensus 238 -----~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~ 283 (289)
T KOG1591|consen 238 -----PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIH 283 (289)
T ss_pred -----ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeee
Confidence 134799999998742 2789999999999999999997
No 12
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.37 E-value=0.00034 Score=62.78 Aligned_cols=72 Identities=24% Similarity=0.471 Sum_probs=62.8
Q ss_pred CCCCccccccC----CceeEEEeecc-cccccceEEec-----ccccccccccccccccccccCCCcEEEEecCC-CCcC
Q 020122 245 RDVELGFHVDD----SEVTLNVCLGR-EFSGGELFFRG-----VRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-HRHG 313 (331)
Q Consensus 245 ~d~~L~~H~D~----SevTlNI~Ln~-dFeGGgl~F~~-----~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr-h~He 313 (331)
.+.....|+|. ..+|+.+.|+. ||+||-+.+.+ .++. +...+|..|++.|+ .+|+
T Consensus 83 ~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~--------------~~~~~GtVl~~~~~~~~Hg 148 (171)
T PF12851_consen 83 SNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVA--------------FAYQPGTVLIFCAKRELHG 148 (171)
T ss_pred eecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEE--------------EecCCCcEEEEcccceeee
Confidence 35578899997 67899999986 49999999998 6544 36789999999999 9999
Q ss_pred CccCCc-----ceeEEEEEeec
Q 020122 314 ARATTS-----GSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTs-----G~Ry~LV~W~r 330 (331)
..||.+ |+|+-||.|.|
T Consensus 149 vtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 149 VTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCcccCCCCCCCeEEEEEEEeE
Confidence 999998 99999999987
No 13
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.22 E-value=0.00084 Score=60.38 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=60.2
Q ss_pred eEEEEcCCCCCCccccccC-C--ce--eEEEeec---ccccccceEEecccccccccccccccccccccCCCcEEEEecC
Q 020122 237 FVVEYGMDRDVELGFHVDD-S--EV--TLNVCLG---REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 308 (331)
Q Consensus 237 FVVrY~~~~d~~L~~H~D~-S--ev--TlNI~Ln---~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~G 308 (331)
.+.+|+++. .-..|.|- . -| -+-|.|+ +||+|||...-+.+..- . .....+.++.|.|+||.-
T Consensus 65 lllrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~--Q-----SR~~V~~L~qGda~if~t 135 (173)
T PF09859_consen 65 LLLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPRM--Q-----SRAMVLPLRQGDALIFAT 135 (173)
T ss_pred hhheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCCc--c-----CccccCCcCCCCEEEEec
Confidence 368898876 88889883 2 23 3444454 69999999998766431 1 123456889999999975
Q ss_pred C--------------CCcCCccCCcceeEEEEE
Q 020122 309 R--------------HRHGARATTSGSRVNLLV 327 (331)
Q Consensus 309 r--------------h~HeglpVTsG~Ry~LV~ 327 (331)
+ .+|+.-+|.+|+||.|-+
T Consensus 136 ~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgl 168 (173)
T PF09859_consen 136 NHRPVRGARGYYRVNMRHGVSRVRSGERHTLGL 168 (173)
T ss_pred CCCCcCCCccceecccccccccccccceEEEEE
Confidence 4 689999999999998843
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.06 E-value=0.0096 Score=51.44 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=79.6
Q ss_pred eEEEe-cCCCHHHHHHHHHHHHhc--ccccccCCccccccCCC-Cccceec-cccChHHHHHHHHHH-hhhhhhhhccCc
Q 020122 152 GIYTF-EMLQPRFCEMLLSEVENF--ERWVHDTRFRIMRPNTM-NKFGAVL-DDFGLETMLDKLMND-FIRPISKVFFPE 225 (331)
Q Consensus 152 ~Vy~f-pvfs~~fC~~LIee~E~f--~~ws~~s~~~i~rpn~m-N~ygvvL-dd~Gl~~~~~~Ll~~-~l~Pl~~~lfp~ 225 (331)
|...+ .+|+++.|++|.++++.. ..+..+........... ..+...+ ++. ..+..++.. .+..+++.++..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 81 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQLAKSP---NFYDLFLHPPRILDLVRALLGS 81 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCGCCCH---HHHHHHHTHHHHHHHHHHHHTS
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch---hhHHHHhhHHHHHHHHHHhhCC
Confidence 44555 699999999999999986 22211111111101111 1111111 111 233444443 445555555521
Q ss_pred cCCCCCccccee--EEEEcCCCCCC-ccccccC---------CceeEEEeecc-cccccceEEeccccccc-------cc
Q 020122 226 VGGSTLDSHHGF--VVEYGMDRDVE-LGFHVDD---------SEVTLNVCLGR-EFSGGELFFRGVRCDKH-------VN 285 (331)
Q Consensus 226 ~~g~~Lds~~~F--VVrY~~~~d~~-L~~H~D~---------SevTlNI~Ln~-dFeGGgl~F~~~~c~~~-------v~ 285 (331)
-.......+..+ +++ .++.+.. ..+|.|. ..+|+-|+|.+ .=+.|.+.+....-+.. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~ 160 (211)
T PF05721_consen 82 DVFVQNWLQSMYQDIVK-PPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFP 160 (211)
T ss_dssp SEEEE--EEEEEEEEEE--TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCC
T ss_pred cchhhhhhHHHHHhhhh-ccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCccccccccc
Confidence 100000011111 122 2222334 5899993 23788899975 34566677764221110 00
Q ss_pred ccc-----------cccccccccCCCcEEEEecCCCCcCCcc-CCcceeE
Q 020122 286 TET-----------QSEEILDYSHVPGYAVLHRGRHRHGARA-TTSGSRV 323 (331)
Q Consensus 286 ~~~-----------~~~e~~~y~~~~G~AllH~Grh~Heglp-VTsG~Ry 323 (331)
... ...+......++|.+|+|.++.+|++.+ .|.+.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 161 EEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-B-SSSTEE
T ss_pred ccccccccccccccccCceEEeecCCCeEEEEcCCccccCCCCCCcCcCC
Confidence 000 0123456678999999999999999999 5555564
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.94 E-value=0.017 Score=55.18 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=88.9
Q ss_pred CeEEEe-cCCCHHHHHHHHHHHHhccccc--ccCCccccccCCCCccceeccccChHHHHHHHHH-HhhhhhhhhccC-c
Q 020122 151 PGIYTF-EMLQPRFCEMLLSEVENFERWV--HDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMN-DFIRPISKVFFP-E 225 (331)
Q Consensus 151 P~Vy~f-pvfs~~fC~~LIee~E~f~~ws--~~s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~-~~l~Pl~~~lfp-~ 225 (331)
.|...+ .+|+++.|+.|.++++...... ......+..+ ..+..+.+++.......+.+|+. .-|..+++.|.. +
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEP-GSNAVRSIFEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecC-CCCceEEEecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 366666 6999999999999998764310 0000000001 11222333333333443433332 233334444442 1
Q ss_pred cCCCCCcccceeEEEEcCC-CCCCccccccCC------------ceeEEEeeccc-ccccceEEecccccccccc-cccc
Q 020122 226 VGGSTLDSHHGFVVEYGMD-RDVELGFHVDDS------------EVTLNVCLGRE-FSGGELFFRGVRCDKHVNT-ETQS 290 (331)
Q Consensus 226 ~~g~~Lds~~~FVVrY~~~-~d~~L~~H~D~S------------evTlNI~Ln~d-FeGGgl~F~~~~c~~~v~~-~~~~ 290 (331)
+ .+ .+..++.+ ++ ....+.||.|.+ .+|+-|+|.+- =+-|.|.|....-+..+.. ...+
T Consensus 107 ~---~l-~~~~l~~k--p~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 107 V---YV-HQSRINMK--PGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred e---EE-Eeeeeeec--CCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 1 11 11223333 43 345778899843 37888888763 4447777764321110000 0000
Q ss_pred ---------------------------cccccccCCCcEEEEecCCCCcCCccCCcce-eEEEEE
Q 020122 291 ---------------------------EEILDYSHVPGYAVLHRGRHRHGARATTSGS-RVNLLV 327 (331)
Q Consensus 291 ---------------------------~e~~~y~~~~G~AllH~Grh~HeglpVTsG~-Ry~LV~ 327 (331)
.....+..++|.+|+|.+..+|++.+-++.. |.++++
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l 245 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFM 245 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEccccccCCCCCCCCCcceeEEE
Confidence 0012345699999999999999999877655 666654
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.87 E-value=0.028 Score=54.26 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=29.5
Q ss_pred cccccCCCcEEEEecCCCCcCCccCCcc--eeEEEEE-eec
Q 020122 293 ILDYSHVPGYAVLHRGRHRHGARATTSG--SRVNLLV-WCR 330 (331)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG--~Ry~LV~-W~r 330 (331)
......++|.+++|.+..+|++-+-++. .|..+++ |+.
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~ 248 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVP 248 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcC
Confidence 3455679999999999999999999884 3666544 553
No 17
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.42 E-value=0.091 Score=48.57 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=60.2
Q ss_pred ceeEEEEcCCCCCCcccccc-CCceeEEEeecccccccceEEecccccccccc-----cc--cccccccccCCCcEEEEe
Q 020122 235 HGFVVEYGMDRDVELGFHVD-DSEVTLNVCLGREFSGGELFFRGVRCDKHVNT-----ET--QSEEILDYSHVPGYAVLH 306 (331)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D-~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~-----~~--~~~e~~~y~~~~G~AllH 306 (331)
...++++.++. .-..|.- +|-++-..+|.-.=.+|.+.|...+....+.. .. ..+....+.|++|..|||
T Consensus 97 ~~W~ni~~~Gg--~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGG--THSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCC--ccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 56788888765 5555544 67899999997554688899986543211100 00 011233468999999999
Q ss_pred cCCCCcCCccCCc-ceeEEE
Q 020122 307 RGRHRHGARATTS-GSRVNL 325 (331)
Q Consensus 307 ~Grh~HeglpVTs-G~Ry~L 325 (331)
|+.++|++.|-.+ +.|..+
T Consensus 175 PS~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 175 ESWLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCCceecCCCCCCCCEEEE
Confidence 9999999999987 456543
No 18
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=96.40 E-value=0.0044 Score=47.49 Aligned_cols=40 Identities=38% Similarity=0.627 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCccccccCC--------ceeEEEeec----ccccccceEEeccc
Q 020122 238 VVEYGMDRDVELGFHVDDS--------EVTLNVCLG----REFSGGELFFRGVR 279 (331)
Q Consensus 238 VVrY~~~~d~~L~~H~D~S--------evTlNI~Ln----~dFeGGgl~F~~~~ 279 (331)
.++|..++ .+.+|+|+. .+|+.|+|| ++|+||.++|....
T Consensus 15 ~~~~~~g~--~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 15 FYRYRRGD--FFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred EEEcCCCC--EeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 35555544 999999964 389999999 79999999998754
No 19
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.14 E-value=0.09 Score=46.49 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=75.0
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCcc--ccccCCC-----------C--ccce--eccccChH---HHHHHH
Q 020122 152 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFR--IMRPNTM-----------N--KFGA--VLDDFGLE---TMLDKL 210 (331)
Q Consensus 152 ~Vy~fp-vfs~~fC~~LIee~E~f~~ws~~s~~~--i~rpn~m-----------N--~ygv--vLdd~Gl~---~~~~~L 210 (331)
|+|.+| +|++++.++|++++.....|....... ......+ . +|.. ..+...+. ..+..+
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~ 80 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRL 80 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHH
Confidence 566665 999999999999998654443221110 0000000 0 1221 22333332 334444
Q ss_pred HHHhhhhhhhhccCccCCCCCcccceeEEEEcCCCCCCccccccCCc-----eeEEEeecccccccceEEeccccccccc
Q 020122 211 MNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGREFSGGELFFRGVRCDKHVN 285 (331)
Q Consensus 211 l~~~l~Pl~~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~Se-----vTlNI~Ln~dFeGGgl~F~~~~c~~~v~ 285 (331)
++....-.. ..+ +..+| ...|-.|.++. .+++|.|+.+ .-+.|+||.. ....|...
T Consensus 81 ~~~~~~~~~--~~~---~~~~n--~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG~~---~~~~f~~~------- 141 (194)
T PF13532_consen 81 LERLVEATG--IPP---GWRPN--QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLGSS---RVFRFRNK------- 141 (194)
T ss_dssp HHHHHHHHT---SH---SS--S--EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEES----EEEEEEEC-------
T ss_pred HHHHHHHhc--ccc---CCCCC--EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEccC---ceEEEeec-------
Confidence 443221110 111 12223 45567898866 9999999874 3566666421 11133321
Q ss_pred ccccccccccccCCCcEEEEecCC---CCcCCccCCcc---------eeEEEE
Q 020122 286 TETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG---------SRVNLL 326 (331)
Q Consensus 286 ~~~~~~e~~~y~~~~G~AllH~Gr---h~HeglpVTsG---------~Ry~LV 326 (331)
...++.+.+....|..++..|. .+|+..++..+ .|.+|.
T Consensus 142 --~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislT 192 (194)
T PF13532_consen 142 --SDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLT 192 (194)
T ss_dssp --GGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEE
T ss_pred --cCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEE
Confidence 1124566778999999999999 44999999885 688875
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.55 E-value=0.051 Score=43.98 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=45.3
Q ss_pred eEEEEcCCCCCCccccc-cCCceeEEEeecccccccceEEecccccccccc-------cccccccccccCCCcEEEEecC
Q 020122 237 FVVEYGMDRDVELGFHV-DDSEVTLNVCLGREFSGGELFFRGVRCDKHVNT-------ETQSEEILDYSHVPGYAVLHRG 308 (331)
Q Consensus 237 FVVrY~~~~d~~L~~H~-D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~-------~~~~~e~~~y~~~~G~AllH~G 308 (331)
..+.++++. ....|. .+|.++-..+|.-+=+.|.+.|...+....... .........+.++.|..||||+
T Consensus 3 W~ni~~~g~--~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 3 WANIYRKGG--YNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEE-TT----EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eEEEeCCCC--ccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 456666654 555554 467889999996444778889875432110100 0112345678999999999999
Q ss_pred CCCcCCccCCcc-eeEEE
Q 020122 309 RHRHGARATTSG-SRVNL 325 (331)
Q Consensus 309 rh~HeglpVTsG-~Ry~L 325 (331)
.+.|++.|-.+. .|+.+
T Consensus 81 ~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TSEEEE----SSS-EEEE
T ss_pred CCEEeccCcCCCCCEEEE
Confidence 999999999987 46554
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.052 Score=50.11 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCCCcccccc---CCceeEEEee-----cccccccceEEecccccccccccccccccccccCCCcEEEEec
Q 020122 236 GFVVEYGMDRDVELGFHVD---DSEVTLNVCL-----GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR 307 (331)
Q Consensus 236 ~FVVrY~~~~d~~L~~H~D---~SevTlNI~L-----n~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~ 307 (331)
....+|.++. .=..|.| +--|.|.|++ ++||+|||...-+.+... .+ ..-.+..++|.+++|.
T Consensus 126 pLlLqYgpgD--~NcLHQDLYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR~--QS-----r~~vvpLrqG~g~vFa 196 (236)
T COG3826 126 PLLLQYGPGD--YNCLHQDLYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPRM--QS-----RPTVVPLRQGDGVVFA 196 (236)
T ss_pred ceeEEecCCc--cchhhhhhhhceeeeeeEEEeccCCCCcccCceEEEEeccccc--cc-----CCceeeccCCceEEEE
Confidence 3578999987 6678888 3334444443 479999999888765431 11 2234578899999884
Q ss_pred CC--------------CCcCCccCCcceeEEEE
Q 020122 308 GR--------------HRHGARATTSGSRVNLL 326 (331)
Q Consensus 308 Gr--------------h~HeglpVTsG~Ry~LV 326 (331)
-+ .+||.-.+-||+|+.+-
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~G 229 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVG 229 (236)
T ss_pred eecCcccCccCccccchhcchhhhhcccceeeE
Confidence 22 89999999999999883
No 22
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=93.78 E-value=0.16 Score=50.59 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCcccceeEEEEcCCCCCCccccccC--------CceeEEEeecccccccceEEecccccccccccccccccccccCCCc
Q 020122 230 TLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG 301 (331)
Q Consensus 230 ~Lds~~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G 301 (331)
.++.+..| ++|..|. .|.-|.|. .+++|.++|+..=+||++.|.=..+...+ ...+
T Consensus 76 ~V~n~iTf-ikY~kGd--~f~~~~d~~~~~~~n~~~y~LvLyL~~~~~GGktkiyi~~~~~tv-------------I~~~ 139 (339)
T PF03336_consen 76 IVDNTITF-IKYEKGD--FFDNHRDFIKRDSKNCLEYHLVLYLNNPENGGKTKIYIDPNDNTV-------------ISTS 139 (339)
T ss_pred EEcceEEE-EEEccCc--chhhhcccceeccCCceEEEEEEEEeccCCCceEEEEECCCCcee-------------eecc
Confidence 44566665 8898876 89999874 35899999999999999998843332111 2558
Q ss_pred EEEEecCCCCcCCccCCcceeEEEE
Q 020122 302 YAVLHRGRHRHGARATTSGSRVNLL 326 (331)
Q Consensus 302 ~AllH~Grh~HeglpVTsG~Ry~LV 326 (331)
.-+||.-+..|+...|++|++++++
T Consensus 140 ~DvLFdKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 140 EDVLFDKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred ccEEEeccccccceEeccCeEEEEE
Confidence 8899999999999999999999965
No 23
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=93.29 E-value=0.67 Score=43.41 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=86.9
Q ss_pred cccCCeEEEecCCCHHHHHHHHHHHHhcc---cccccCCcc---ccccCCC-----------Ccccee-c---cccChH-
Q 020122 147 AEPIPGIYTFEMLQPRFCEMLLSEVENFE---RWVHDTRFR---IMRPNTM-----------NKFGAV-L---DDFGLE- 204 (331)
Q Consensus 147 ~e~~P~Vy~fpvfs~~fC~~LIee~E~f~---~ws~~s~~~---i~rpn~m-----------N~ygvv-L---dd~Gl~- 204 (331)
++..||++.+|=|..+.+++|++++++.. .|-+ -..+ .|.+..+ +.|+-- . .-....
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAVAAQAPFRH-MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHHHhcCCccc-eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 45678999999889999999999988732 2211 0000 1111111 112211 1 111111
Q ss_pred --HHHHHHHHHhhhhhhhhccCccCCCCCcccceeEEEEcCCCCCCccccccCCc-----eeEEEeecccccccceEEec
Q 020122 205 --TMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGREFSGGELFFRG 277 (331)
Q Consensus 205 --~~~~~Ll~~~l~Pl~~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~Se-----vTlNI~Ln~dFeGGgl~F~~ 277 (331)
..+..|.++... ..++....+| -..|-.|.++. .+++|.|+.| .-++|+||. .+.|.=
T Consensus 93 ~P~~l~~L~~~~~~------~~~~~~~~p~--a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~-----~~~F~~ 157 (213)
T PRK15401 93 MPASFLALAQRAAA------AAGFPGFQPD--ACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGL-----PAVFQF 157 (213)
T ss_pred chHHHHHHHHHHHH------HcCCCCCCCC--EEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCC-----CeEEEe
Confidence 134444432211 0111111223 46678899885 9999999644 346666653 333331
Q ss_pred ccccccccccccccccccccCCCcEEEEecCC---CCcCCccCCcc-------eeEEEE
Q 020122 278 VRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG-------SRVNLL 326 (331)
Q Consensus 278 ~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---h~HeglpVTsG-------~Ry~LV 326 (331)
..-+ +.++...+....|..||..|. .+|+..++..| .|+||-
T Consensus 158 ~~~~-------~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLT 209 (213)
T PRK15401 158 GGLK-------RSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLT 209 (213)
T ss_pred cccC-------CCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEE
Confidence 0000 012234567899999999988 88999988765 599985
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=89.53 E-value=0.82 Score=43.67 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCC------------CcC
Q 020122 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH------------RHG 313 (331)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh------------~He 313 (331)
+..+++|+|.+.+||... ++ .|||.... .+++..+.+.+|..||.-|.+ .|.
T Consensus 132 ~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~------------~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HR 195 (262)
T PLN03001 132 TLGLQSHSDFGAITLLIQ--DD--VEGLQLLK------------DAEWLMVPPISDAILIIIADQTEIITNGNYKSAQHR 195 (262)
T ss_pred ccCCcCCcCCCeeEEEEe--CC--CCceEEee------------CCeEEECCCCCCcEEEEccHHHHHHhCCccccccce
Confidence 456889999999999654 33 35676542 146788899999999999874 488
Q ss_pred CccCCcceeEEEEEeec
Q 020122 314 ARATTSGSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTsG~Ry~LV~W~r 330 (331)
+.......||.+..|++
T Consensus 196 Vv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 196 AIANANKARLSVATFHD 212 (262)
T ss_pred EEcCCCCCEEEEEEEEc
Confidence 87655677999999986
No 25
>PLN02276 gibberellin 20-oxidase
Probab=89.36 E-value=1.2 Score=44.40 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=58.3
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+ +....+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|.
T Consensus 210 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q---d-~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 273 (361)
T PLN02276 210 CNYYPPCQEPELTLGTGPHCDPTSLTILHQ---D-QVGGLQVFV------------DNKWRSVRPRPGALVVNIGDTFMA 273 (361)
T ss_pred eEeCCCCCCcccccCCccccCCceeEEEEe---c-CCCceEEEE------------CCEEEEcCCCCCeEEEEcHHHHHH
Confidence 455644 23456889999999999874 2 466787652 14678889999999999975
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+..-..+.||.++.|++
T Consensus 274 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 274 LSNGRYKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred HhCCccccccceeecCCCCCEEEEEEEec
Confidence 678887656678999999985
No 26
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=88.93 E-value=1.2 Score=44.25 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=57.2
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+ +.+..+++|+|-+.+||... ++ ..|||.... ..++..+.+.+|..||.-|.
T Consensus 207 l~~YPp~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 207 FNMYPPCPRPDKVIGVKPHADGSAFTLLLP--DK-DVEGLQFLK------------DGKWYKAPIVPDTILINVGDQMEI 271 (348)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEEe--cC-CCCceeEeE------------CCeEEECCCCCCcEEEEcChHHHH
Confidence 456644 23456889999999998754 11 236677642 14678889999999999886
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+..-..+.||.+..|++
T Consensus 272 ~Tng~~kSt~HRVv~~~~~~R~Si~fF~~ 300 (348)
T PLN00417 272 MSNGIYKSPVHRVVTNREKERISVATFCI 300 (348)
T ss_pred HhCCeecccceEEecCCCCCEEEEEEEec
Confidence 568887666778999999985
No 27
>PLN02904 oxidoreductase
Probab=88.53 E-value=1.4 Score=43.96 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=57.6
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- .+..+++|+|.+.+||... + +|||..... ..++..+.+.+|..||.-|.
T Consensus 212 l~~YPp~p~~~~~~g~~~HtD~g~lTlL~q---d--~~GLQV~~~-----------~g~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 212 VNCYPACPEPEIALGMPPHSDFGSLTILLQ---S--SQGLQIMDC-----------NKNWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEec---C--CCeeeEEeC-----------CCCEEECCCCCCeEEEEccHHHHH
Confidence 4667542 3446789999999999864 2 367876531 14678889999999999985
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+..-....||.+..|+.
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeec
Confidence 678887556678999999974
No 28
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=87.68 E-value=1.5 Score=42.41 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=53.3
Q ss_pred CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC------------CCc
Q 020122 245 RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRH 312 (331)
Q Consensus 245 ~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~H 312 (331)
.+..+++|+|.+.+||... ++ +.|||...... ..++..+.+.+|..||.-|. -+|
T Consensus 164 ~~~g~~~HtD~g~lTlL~q--d~-~~~GLqV~~~~----------~g~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~H 230 (300)
T PLN02365 164 GSSGVQIHTDSGFLTILQD--DE-NVGGLEVMDPS----------SGEFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKH 230 (300)
T ss_pred ccccccCccCCCceEEEec--CC-CcCceEEEECC----------CCeEEecCCCCCeEEEEhhHHHHHHhCCceecccc
Confidence 3456889999999998754 21 25677765310 14678889999999999886 578
Q ss_pred CCccCCcceeEEEEEee
Q 020122 313 GARATTSGSRVNLLVWC 329 (331)
Q Consensus 313 eglpVTsG~Ry~LV~W~ 329 (331)
.+..-....||.+..|+
T Consensus 231 RVv~~~~~~R~Si~~F~ 247 (300)
T PLN02365 231 RVQCKEATMRISIASFL 247 (300)
T ss_pred eeEcCCCCCEEEEEEEe
Confidence 88755556799999986
No 29
>PLN02947 oxidoreductase
Probab=87.48 E-value=1.9 Score=43.28 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=53.2
Q ss_pred CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC------------CCcC
Q 020122 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (331)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (331)
.-.+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|. .+|.
T Consensus 241 ~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HR 304 (374)
T PLN02947 241 TLGMPPHSDYGFLTLLLQ--D--EVEGLQIMH------------AGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHR 304 (374)
T ss_pred ccCCCCccCCCceEEEEe--c--CCCCeeEeE------------CCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccc
Confidence 345789999999999875 2 256777652 14678889999999999997 5688
Q ss_pred CccCCcceeEEEEEeec
Q 020122 314 ARATTSGSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTsG~Ry~LV~W~r 330 (331)
+..-..+.||.+..|+.
T Consensus 305 Vv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 305 VRVNSTKPRISVASLHS 321 (374)
T ss_pred cccCCCCCEEEEEEEec
Confidence 86555677999999874
No 30
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.01 E-value=2.2 Score=42.39 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=56.8
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCC---
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH--- 310 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh--- 310 (331)
+.+|-+- .+..+++|+|-+.+||... ++ .|||.... ..++..+.+.+|..||.-|-.
T Consensus 204 l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wv~V~p~pgalVVNiGD~Le~ 267 (341)
T PLN02984 204 VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DE--VGGLEVMK------------DGEWFNVKPIANTLVVNLGDMMQV 267 (341)
T ss_pred EEeCCCCCCcccccCccCccCCCceEEEEe--CC--CCCeeEee------------CCceEECCCCCCeEEEECChhhhh
Confidence 4667552 2446889999999999875 22 36676541 146888999999999999974
Q ss_pred ---------CcCCc-cCCcceeEEEEEeec
Q 020122 311 ---------RHGAR-ATTSGSRVNLLVWCR 330 (331)
Q Consensus 311 ---------~Hegl-pVTsG~Ry~LV~W~r 330 (331)
.|.+. +-....||.++.|++
T Consensus 268 wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~ 297 (341)
T PLN02984 268 ISDDEYKSVLHRVGKRNKKKERYSICYFVF 297 (341)
T ss_pred hcCCeeeCCCCccccCCCCCCeEEEEEEec
Confidence 49994 444567999999985
No 31
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=2.7 Score=40.49 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCccccccCC------ceeEEEeec---ccccccce-EEecccccccccccccccccccccCCCcEEEEec
Q 020122 238 VVEYGMDRDVELGFHVDDS------EVTLNVCLG---REFSGGEL-FFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR 307 (331)
Q Consensus 238 VVrY~~~~d~~L~~H~D~S------evTlNI~Ln---~dFeGGgl-~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~ 307 (331)
+..|.++- .+..|-|+. .+|....++ +.+-||+| .|...-. ..+.++...+..|.=+..++|-
T Consensus 140 ~~~y~~G~--~l~~H~D~~~~~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~-----~~~~~~~~~ti~P~fn~lv~F~ 212 (252)
T COG3751 140 ITVYNPGC--FLLKHDDNGRDKDIRLATYVYYLTREWKPEYGGELRLFHSLQK-----NNTAADSFKTIAPVFNSLVFFK 212 (252)
T ss_pred eeEecCCc--eeEeecccCCCccceEEEEEeccCCCCCcCCCCceeecccccc-----cccccccccccCCCCceEEEEE
Confidence 45687766 899998865 477788887 57899999 6664321 1233456677889999999999
Q ss_pred CCCCcCCccCCc----ceeEEEEEeecC
Q 020122 308 GRHRHGARATTS----GSRVNLLVWCRR 331 (331)
Q Consensus 308 Grh~HeglpVTs----G~Ry~LV~W~rs 331 (331)
-+-.|+..+|-. +.|..+-.|.|+
T Consensus 213 s~~~Hs~h~V~~~~~~~~RlsV~GW~r~ 240 (252)
T COG3751 213 SRPSHSVHSVEEPYAAADRLSVTGWFRR 240 (252)
T ss_pred ecCCccceeccccccccceEEEeeEEec
Confidence 998888877765 889999999984
No 32
>PLN02216 protein SRG1
Probab=86.35 E-value=2 Score=42.69 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=56.8
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCC---
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH--- 310 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh--- 310 (331)
+.+|-+ +....+++|+|-+.+||...-++ .|||.... ..++..+.+.+|..||.-|.+
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~---v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 278 (357)
T PLN02216 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE---VEGLQIKK------------DGKWVSVKPLPNALVVNVGDILEI 278 (357)
T ss_pred EeecCCCCCcccccCccCcccCceEEEEEecCC---CCceeEEE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 355644 23446889999999998764222 35676542 146788899999999999973
Q ss_pred ---------CcCCccCCcceeEEEEEeec
Q 020122 311 ---------RHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 311 ---------~HeglpVTsG~Ry~LV~W~r 330 (331)
.|.+..-..+.||.++.|+.
T Consensus 279 ~TNG~~kS~~HRVv~~~~~~R~Si~~F~~ 307 (357)
T PLN02216 279 ITNGTYRSIEHRGVVNSEKERLSVATFHN 307 (357)
T ss_pred hcCCeeeccCceeecCCCCCEEEEEEEec
Confidence 48886666678999999985
No 33
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=85.97 E-value=2.4 Score=42.01 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=57.8
Q ss_pred EEEEcCCC------CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC--
Q 020122 238 VVEYGMDR------DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-- 309 (331)
Q Consensus 238 VVrY~~~~------d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr-- 309 (331)
+.+|-+-. +..+++|+|-+.+||... + +.|||.... +..++..+.+.+|..||.-|-
T Consensus 182 l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~-----------~~g~Wi~Vpp~pga~VVNiGD~l 246 (335)
T PLN02156 182 MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--N--DTAGLQICV-----------KDGTWVDVPPDHSSFFVLVGDTL 246 (335)
T ss_pred EEeCCCCCCCccccccCCCCccCCCceEEEEe--C--CCCceEEEe-----------CCCCEEEccCCCCcEEEEhHHHH
Confidence 46675532 245788999999999865 2 356777642 124688889999999999986
Q ss_pred ----------CCcCCccCCcceeEEEEEeec
Q 020122 310 ----------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 ----------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-.|.+..-....||.+..|+.
T Consensus 247 ~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 247 QVMTNGRFKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred HHHhCCeeeccceeeecCCCCCEEEEEEeec
Confidence 578887666677999999975
No 34
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=85.70 E-value=2.3 Score=42.27 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=52.8
Q ss_pred CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC------------CCcC
Q 020122 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (331)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (331)
+..+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|. -+|.
T Consensus 227 ~~g~~~HTD~g~lTlL~q--d--~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HR 290 (360)
T PLN03178 227 ALGVEAHTDVSALTFILH--N--MVPGLQVLY------------EGKWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHR 290 (360)
T ss_pred ccCcCCccCCCceEEEee--C--CCCceeEeE------------CCEEEEcCCCCCeEEEEccHHHHHHhCCccccccce
Confidence 456889999999999853 2 256777652 13677889999999999986 5788
Q ss_pred CccCCcceeEEEEEeec
Q 020122 314 ARATTSGSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTsG~Ry~LV~W~r 330 (331)
+..-..+.||.+..||+
T Consensus 291 Vv~~~~~~R~Si~~F~~ 307 (360)
T PLN03178 291 GLVNKEKVRISWAVFCE 307 (360)
T ss_pred eecCCCCCeEEEEEEec
Confidence 75444567999999985
No 35
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.49 E-value=2.4 Score=42.01 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=57.7
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- .+..+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|.
T Consensus 201 l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 264 (348)
T PLN02912 201 INYYPPCPQPELTYGLPGHKDANLITVLLQ--D--EVSGLQVFK------------DGKWIAVNPIPNTFIVNLGDQMQV 264 (348)
T ss_pred eeecCCCCChhhcCCcCCCcCCCceEEEEE--C--CCCceEEEE------------CCcEEECCCcCCeEEEEcCHHHHH
Confidence 3556552 2446889999999999765 2 356787752 14678889999999999886
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+.....+.||.+..|++
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 293 (348)
T PLN02912 265 ISNDKYKSVLHRAVVNTDKERISIPTFYC 293 (348)
T ss_pred HhCCEEEcccccccCCCCCCEEEEEEEec
Confidence 578887656678999999985
No 36
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.27 E-value=2.3 Score=42.03 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=58.5
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... +..++..+.+.+|..||.-|.
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d--~v~GLQV~~~----------~~g~Wi~V~p~pg~~vVNiGD~L~~ 262 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--D--DVGGLQISRR----------SDGEWIPVKPIPDAFIINIGNCMQV 262 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEec--C--CCCceEEeec----------CCCeEEEccCCCCeEEEEhHHHHHH
Confidence 4567542 3446889999999999654 2 3477876421 124688889999999999886
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+.......||.++.|+.
T Consensus 263 ~Tng~~~St~HRVv~~~~~~R~Si~~F~~ 291 (345)
T PLN02750 263 WTNDLYWSAEHRVVVNSQKERFSIPFFFF 291 (345)
T ss_pred HhCCeeecccceeccCCCCCEEEEEEeec
Confidence 678888666677999999985
No 37
>PLN02485 oxidoreductase
Probab=84.89 E-value=1.4 Score=43.07 Aligned_cols=71 Identities=24% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC------------CCcC
Q 020122 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (331)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (331)
+..+++|+|-+.+||... ++ +-|||..... ..++..+.+.+|..||.-|- -+|.
T Consensus 204 ~~g~~~HTD~g~lTlL~q--d~-~~~GLqV~~~-----------~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HR 269 (329)
T PLN02485 204 DIGCGAHTDYGLLTLVNQ--DD-DITALQVRNL-----------SGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHR 269 (329)
T ss_pred CcccccccCCCeEEEEec--cC-CCCeeeEEcC-----------CCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCce
Confidence 346889999999999543 11 2367776531 24677889999999999885 4599
Q ss_pred CccCCcceeEEEEEeec
Q 020122 314 ARATTSGSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTsG~Ry~LV~W~r 330 (331)
+..-....||.++.|++
T Consensus 270 Vv~~~~~~R~Si~~F~~ 286 (329)
T PLN02485 270 VINNSPKYRVCVAFFYE 286 (329)
T ss_pred ecCCCCCCeEEEEEEec
Confidence 98666667999999985
No 38
>PTZ00273 oxidase reductase; Provisional
Probab=84.51 E-value=2.4 Score=41.29 Aligned_cols=77 Identities=26% Similarity=0.288 Sum_probs=56.0
Q ss_pred EEEEcCC-----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC---
Q 020122 238 VVEYGMD-----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (331)
Q Consensus 238 VVrY~~~-----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (331)
+.+|-+. .+..+++|+|-+.+||... + ..|||..... ..++..+.+.+|..||.-|.
T Consensus 181 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d--~~~GLqV~~~-----------~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 181 MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--D--SVGGLQVRNL-----------SGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eeecCCCCCccccCcccccccCCCeEEEEec--C--CCCceEEECC-----------CCCEEeCCCCCCeEEEEHHHHHH
Confidence 4667552 2345789999999999864 2 2467876531 24577889999999999884
Q ss_pred ---------CCcCCccCCcceeEEEEEeec
Q 020122 310 ---------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+.. ....||.++.|++
T Consensus 246 ~~TnG~~kSt~HRVv~-~~~~R~Si~~F~~ 274 (320)
T PTZ00273 246 MWSNGRYRSTPHRVVN-TGVERYSMPFFCE 274 (320)
T ss_pred HHHCCeeeCCCccccC-CCCCeEEEEEEEc
Confidence 6788863 3467999999986
No 39
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=84.44 E-value=2.7 Score=41.25 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=55.9
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- .+..+++|+|.+.+||...= + +.|||.... ..++..+.+.+|..||.-|.
T Consensus 162 l~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd--~-~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~l~~ 226 (321)
T PLN02299 162 VSNYPPCPKPDLVKGLRAHTDAGGIILLFQD--D-KVSGLQLLK------------DGEWVDVPPMRHSIVVNLGDQLEV 226 (321)
T ss_pred eEecCCCCCcccccCccCccCCCeEEEEEec--C-CCCCcCccc------------CCeEEECCCCCCeEEEEeCHHHHH
Confidence 4667552 23357799999999997531 1 235665431 24677889999999999986
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-.|.+..-..+.||.+..|++
T Consensus 227 ~Tng~~kS~~HRVv~~~~~~R~Si~~F~~ 255 (321)
T PLN02299 227 ITNGKYKSVMHRVVAQTDGNRMSIASFYN 255 (321)
T ss_pred HhCCceecccceeecCCCCCEEEEEEEec
Confidence 568887555778999999975
No 40
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=83.44 E-value=2.9 Score=41.73 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=57.6
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+ +.+..++.|+|.+.+||... + +.|||...... .+++..+.+.+|..||.-|.
T Consensus 199 l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~~~----------~~~Wi~Vpp~pgalVVNiGD~L~~ 264 (358)
T PLN02515 199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--D--QVGGLQATRDG----------GKTWITVQPVEGAFVVNLGDHGHY 264 (358)
T ss_pred EeecCCCCChhhccCCCCCCCCCeEEEEec--C--CCCceEEEECC----------CCeEEECCCCCCeEEEEccHHHHH
Confidence 455654 23346889999999999765 2 24678765311 13588889999999999985
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+..-..+.||.++.|+.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 293 (358)
T PLN02515 265 LSNGRFKNADHQAVVNSNCSRLSIATFQN 293 (358)
T ss_pred HhCCeeeeecceEECCCCCCEEEEEEEec
Confidence 578876666678999999985
No 41
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=83.21 E-value=2.5 Score=42.12 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=57.4
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- ....+++|+|-+.+||... ++ .|||..... .+++..+.+.+|..||.-|.
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~--v~GLQV~~~-----------~~~Wi~V~p~pgalVVNiGD~lq~ 278 (358)
T PLN02254 214 LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SN--TSGLQVFRE-----------GVGWVTVPPVPGSLVVNVGDLLHI 278 (358)
T ss_pred EecCCCCCCcccccCcCCccCCCcEEEEec--CC--CCCceEECC-----------CCEEEEcccCCCCEEEEhHHHHHH
Confidence 4567552 3446889999999999874 32 466776421 13678889999999999984
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
..|.+..-....||.+..|+.
T Consensus 279 ~SNg~~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 279 LSNGRFPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred HhCCeeccccceeecCCCCCEEEEEEEec
Confidence 678886545567999999874
No 42
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.97 E-value=3.8 Score=40.36 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=56.4
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- .+..++.|+|-+.+||... ++ +.|||.... ..++..+.+.+|..||.-|.
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQ-QVAGLQVLK------------DGKWVAVNPHPGAFVINIGDQLQA 258 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cC-CcCceEeec------------CCeEEeccCCCCeEEEechhHHHH
Confidence 4556553 2345889999999999653 21 235676541 24678889999999999985
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+.....+.||.+..|++
T Consensus 259 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 287 (337)
T PLN02639 259 LSNGRYKSVWHRAVVNTDKERMSVASFLC 287 (337)
T ss_pred HhCCeeeccCcccccCCCCCEEEEEEEec
Confidence 678887555677999999985
No 43
>PLN02704 flavonol synthase
Probab=82.90 E-value=3.7 Score=40.36 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC------------CCcC
Q 020122 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (331)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (331)
+-.+++|+|-+.+||... ++ .|||.... ..++..+.+.+|..||.-|. -+|.
T Consensus 215 ~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HR 278 (335)
T PLN02704 215 ALGVVAHTDMSAITILVP--NE--VQGLQVFR------------DDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVLHR 278 (335)
T ss_pred ccCccCccCCcceEEEec--CC--CCceeEeE------------CCEEEeCCCCCCeEEEEechHHHHHhCCeeecccce
Confidence 345789999999999775 33 56777642 14678889999999999997 5688
Q ss_pred CccCCcceeEEEEEeec
Q 020122 314 ARATTSGSRVNLLVWCR 330 (331)
Q Consensus 314 glpVTsG~Ry~LV~W~r 330 (331)
+..--...||.++.|++
T Consensus 279 Vv~~~~~~R~Si~~F~~ 295 (335)
T PLN02704 279 TTVNKEKTRMSWPVFLE 295 (335)
T ss_pred eecCCCCCeEEEEEEec
Confidence 86544567999999985
No 44
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=82.41 E-value=1.9 Score=39.43 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=50.8
Q ss_pred EEEEcCCCCC-----CccccccCCceeEEEeec-ccccccceEEecccccccccccccccccccccCCCcEEEEec-CCC
Q 020122 238 VVEYGMDRDV-----ELGFHVDDSEVTLNVCLG-REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR-GRH 310 (331)
Q Consensus 238 VVrY~~~~d~-----~L~~H~D~SevTlNI~Ln-~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~-Grh 310 (331)
-+|+.+..+. -=+.|.|..++++..+++ ..-+||++......-.+ -...--..+|.+++.- .+.
T Consensus 100 q~Ri~a~~~~~g~ptPEGiH~DG~d~v~~~li~r~Ni~GG~s~i~~~~~~~---------~~~~~l~~p~d~l~~~D~~~ 170 (195)
T PF10014_consen 100 QIRIIATPDEPGEPTPEGIHRDGVDFVFIHLINRHNIEGGESQIYDNDKEI---------LFFFTLLEPGDTLLVDDRRV 170 (195)
T ss_dssp EEEEETTTS--B--STTSSB--SSSEEEEEEEEEESEEE--EEEEETTSSE---------EEEE---STTEEEEEETTTE
T ss_pred EEEEEEecCccCCcCCCCccCCCCCEEEEEEEcCCCccCceEEEEeCCCCc---------ceEEEecCCCCEEEEeCCcc
Confidence 4666664433 357999999999999887 46799999986433211 1112245789998888 669
Q ss_pred CcCCccCCc------ceeEEEEEe
Q 020122 311 RHGARATTS------GSRVNLLVW 328 (331)
Q Consensus 311 ~HeglpVTs------G~Ry~LV~W 328 (331)
+|++.||++ |.|-+||+-
T Consensus 171 ~H~vtpI~~~~~~~~g~RDvlvit 194 (195)
T PF10014_consen 171 WHYVTPIRPVDPSRPGYRDVLVIT 194 (195)
T ss_dssp EEEE--EEES-TT---EEEEEEEE
T ss_pred eECCCceecCCCCCcEEEEEEEEe
Confidence 999999873 889999874
No 45
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=82.22 E-value=6.6 Score=37.73 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=60.8
Q ss_pred ceeEEEEcCCCCCCccccccC-----CceeEEEeeccc----ccccceEEecccccccccccccccccccccCCCcEEEE
Q 020122 235 HGFVVEYGMDRDVELGFHVDD-----SEVTLNVCLGRE----FSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVL 305 (331)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D~-----SevTlNI~Ln~d----FeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~All 305 (331)
.+.|.+|-. .+...-.|+|+ -.+|.--+||+. -.||.|+..-... ....+.+|+-+..|+
T Consensus 144 kAMVAcYPG-NGtgYVrHVDNP~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~----------~~~adieP~fdrLlf 212 (280)
T KOG3710|consen 144 KAMVACYPG-NGTGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGILRIFPEGS----------TTFADIEPKFDRLLF 212 (280)
T ss_pred eEEEEEecC-CCceeeEeccCCCCCceEEEEEEEcccCcceeeccceeEeccCCC----------CcccccCcCCCeEEE
Confidence 567899954 45566667775 458998999863 4688887653321 223466899999999
Q ss_pred ecCC--CCcCCccCCcceeEEEEEee
Q 020122 306 HRGR--HRHGARATTSGSRVNLLVWC 329 (331)
Q Consensus 306 H~Gr--h~HeglpVTsG~Ry~LV~W~ 329 (331)
|-.. .-||.+|... +||.+.+|-
T Consensus 213 fwSdrrnPhev~Pa~~-tryaitvwy 237 (280)
T KOG3710|consen 213 FWSDRRNPHEVQPAYA-TRYAITVWY 237 (280)
T ss_pred EEecCCCccccccccc-cceEEEEEE
Confidence 9887 5599999987 589988884
No 46
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.07 E-value=4.4 Score=40.40 Aligned_cols=79 Identities=20% Similarity=0.170 Sum_probs=55.5
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+ +....+++|+|-+.+||... ++=.-|||.... ..++..+.+.+|..||.-|.
T Consensus 215 ~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~~~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 215 MNYYPPCSRPDLVLGLSPHSDGSALTVLQQ--GKGSCVGLQILK------------DNTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred eecCCCCCCcccccCccCccCCceeEEEEe--CCCCCCCeeeee------------CCEEEeCCCCCCeEEEEccchhhh
Confidence 355643 23445789999999999864 110124676542 14677889999999999996
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+..-....||.+..|++
T Consensus 281 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 281 LTNGKYKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred hcCCeeecccceeecCCCCCEEEEEEEec
Confidence 578887555567999999985
No 47
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=79.64 E-value=6.5 Score=38.36 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=55.4
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCc-EEEEecCC---
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG-YAVLHRGR--- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G-~AllH~Gr--- 309 (331)
+.+|-+- ....+++|+|-+.+||...-+ +-|||.... ..++..+.+.+| ..||.-|.
T Consensus 157 l~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~---~v~GLqV~~------------~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 157 VAKYPECPRPELVRGLREHTDAGGIILLLQDD---QVPGLEFLK------------DGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred eEcCCCCCCcccccCccCccCCCeEEEEEecC---CCCceEecc------------CCeEEECCCCCCCEEEEEehHHHH
Confidence 5677553 223478999999999876422 135676531 146777888884 78888775
Q ss_pred ---------CCcCCccCCcceeEEEEEeec
Q 020122 310 ---------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+.....+.||.+..|++
T Consensus 222 ~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~ 251 (303)
T PLN02403 222 VLSNGRYKSTLHRVMADKNGSRLSIATFYN 251 (303)
T ss_pred HHhCCeeecccceeecCCCCCEEEEEEEEc
Confidence 579988766778999999985
No 48
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=79.55 E-value=6.4 Score=39.22 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=55.5
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+ +....+++|+|-+.+||...- ++ -|||.... ..++..+.+.+|..||.-|.
T Consensus 217 l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~--v~GLQV~~------------~g~W~~V~p~pgalVVNiGD~l~~ 281 (362)
T PLN02393 217 VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DN--VAGLQVRR------------DDAWITVKPVPDAFIVNIGDQIQV 281 (362)
T ss_pred eeecCCCCCcccccccccccCCceEEEEeeC-CC--CCcceeeE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 456643 234468899999999996541 11 25666542 14677889999999999987
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-+|.+..-....||.++.|++
T Consensus 282 ~Tng~~kSt~HRVv~~~~~~R~SiafF~~ 310 (362)
T PLN02393 282 LSNAIYKSVEHRVIVNSAKERVSLAFFYN 310 (362)
T ss_pred hcCCeeeccceecccCCCCCEEEEEEEec
Confidence 468886544557999999985
No 49
>PLN02997 flavonol synthase
Probab=77.55 E-value=8.3 Score=37.96 Aligned_cols=77 Identities=21% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEcCC----CCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|-+- ....+++|+|-+.+||... ++ -|||.... ..++..+.+.+|..||.-|.
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~Le~ 250 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIP--NE--VPGLQAFK------------DEQWLDLNYINSAVVVIIGDQLMR 250 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEec--CC--CCCEEEeE------------CCcEEECCCCCCeEEEEechHHHH
Confidence 3556542 2346889999999999864 32 35677652 13577889999999999996
Q ss_pred --------CCcCCccCCcceeEEEEEeec
Q 020122 310 --------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~r 330 (331)
-.|.+..-....||.+..|+.
T Consensus 251 ~TNG~~kSt~HRVv~~~~~~R~Si~fF~~ 279 (325)
T PLN02997 251 MTNGRFKNVLHRAKTDKERLRISWPVFVA 279 (325)
T ss_pred HhCCccccccceeeCCCCCCEEEEEEEec
Confidence 458886544556999999975
No 50
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=77.19 E-value=6.9 Score=34.61 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=53.9
Q ss_pred hhhhhccCccCC--CCCcccceeEEEEcCCCCCCccccccCCceeEEEeec--ccccccceEEecccccccccccccccc
Q 020122 217 PISKVFFPEVGG--STLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSEE 292 (331)
Q Consensus 217 Pl~~~lfp~~~g--~~Lds~~~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln--~dFeGGgl~F~~~~c~~~v~~~~~~~e 292 (331)
|.+..+.-.+.. ........++.+-.|+. .+.+|+|.+...+.+-|+ .. -++++|.-.+-
T Consensus 61 P~t~~ll~~lp~~~~~~~~~~~~~s~l~pg~--~I~pH~d~~~~~lR~Hl~L~~p--~~~~~~~v~~~------------ 124 (163)
T PF05118_consen 61 PKTTALLEQLPGVTGGCPLGRVRFSRLPPGT--HIKPHRDPTNLRLRLHLPLIVP--NPGCYIRVGGE------------ 124 (163)
T ss_dssp HHCHCCCCCSHHHHCSTTCEEEEEEEEECTE--EEEEE-SS-TTEEEEEEEEC----STTEEEEETTE------------
T ss_pred HHHHHHHHhCcccccccchhhEEEEEECCCC--EECCeeCCCCcceEEEEEEEcC--CCCeEEEECCe------------
Confidence 555555533311 11233345556666655 999999987655555443 22 24455552111
Q ss_pred cccccCCCcEEEEecCCCCcCCccCCcceeEEEEE
Q 020122 293 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLV 327 (331)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~ 327 (331)
.+.-+.|.++++-.+..|++.--....|.+|++
T Consensus 125 --~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 125 --TRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp --EEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred --EEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 235688999999999999999999999999986
No 51
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.82 E-value=5.1 Score=37.04 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=59.0
Q ss_pred cCCeEEEec-CCCHHHHHHHHHHHHhcc--cccccCCccccccCCCCccceeccccChH-HHHHHHHHHhhhhhhhhccC
Q 020122 149 PIPGIYTFE-MLQPRFCEMLLSEVENFE--RWVHDTRFRIMRPNTMNKFGAVLDDFGLE-TMLDKLMNDFIRPISKVFFP 224 (331)
Q Consensus 149 ~~P~Vy~fp-vfs~~fC~~LIee~E~f~--~ws~~s~~~i~rpn~mN~ygvvLdd~Gl~-~~~~~Ll~~~l~Pl~~~lfp 224 (331)
.+|.++-+| +.++++=..++.-+|+-- +|..-+ ..-..|||=|...-||- ..+-..+..|+.-|.. -
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~------NRRLqNyGGvvh~~glipeelP~wLq~~v~kinn---l 80 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA------NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINN---L 80 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH------hhhhhhcCCccccCCcCccccCHHHHHHHHHhhc---c
Confidence 356666665 889999888888888754 342111 22345788888887774 2222222233333321 1
Q ss_pred ccCCCCCcccceeEEEEcCCCCCCccccccCCc
Q 020122 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE 257 (331)
Q Consensus 225 ~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~Se 257 (331)
++.++ ...|-.|-+|-|++ .+.+|.|.--
T Consensus 81 glF~s--~~NHVLVNeY~pgq--GImPHtDGPa 109 (224)
T KOG3200|consen 81 GLFKS--PANHVLVNEYLPGQ--GIMPHTDGPA 109 (224)
T ss_pred cccCC--CcceeEeecccCCC--CcCcCCCCCc
Confidence 22223 34577899999998 8999999754
No 52
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.19 E-value=14 Score=36.47 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=60.2
Q ss_pred cceeEEEEcCCCCCC----ccccccCC--------ceeEEEeecc-cccccceEEecccccccccccccc-------ccc
Q 020122 234 HHGFVVEYGMDRDVE----LGFHVDDS--------EVTLNVCLGR-EFSGGELFFRGVRCDKHVNTETQS-------EEI 293 (331)
Q Consensus 234 ~~~FVVrY~~~~d~~----L~~H~D~S--------evTlNI~Ln~-dFeGGgl~F~~~~c~~~v~~~~~~-------~e~ 293 (331)
++++|..-.++.+.. -.+|.|-. .|.+-|+|-+ .=+-|-|++.-..-+-.+- ...+ +..
T Consensus 114 ~~~~v~~~~~~~~~p~~~~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~-~~r~d~~~y~~~~~ 192 (299)
T COG5285 114 RHGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVI-PERPDHETYLERNA 192 (299)
T ss_pred cCCeEEEecCCCCCCcccccccccccccccCCccceEEEEEeccccccccCceEEEecccccccC-CCCCCccchhhhcc
Confidence 456677777766665 88999932 2555566643 2334556665433221000 1111 125
Q ss_pred ccccCCCcEEEEecCCCCcCCccCCcce--eEEEEEeecC
Q 020122 294 LDYSHVPGYAVLHRGRHRHGARATTSGS--RVNLLVWCRR 331 (331)
Q Consensus 294 ~~y~~~~G~AllH~Grh~HeglpVTsG~--Ry~LV~W~rs 331 (331)
+.+...+|.+|+|.|++.|+|..=++|. +.+.+-|+.|
T Consensus 193 ~pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~ 232 (299)
T COG5285 193 VPVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVS 232 (299)
T ss_pred eeeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeec
Confidence 5678899999999999999999999884 4455556543
No 53
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.36 E-value=6.1 Score=38.85 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=56.9
Q ss_pred EEEEcCCC-----CCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC---
Q 020122 238 VVEYGMDR-----DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (331)
Q Consensus 238 VVrY~~~~-----d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (331)
+.+|-+-. +-.+++|+|-+.+||... ++ -|||...... .....++..+.+.+|..||.-|.
T Consensus 186 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~~~-------~~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 186 LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DG--VMGLQICKDK-------NAMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeCCCCCCcccCccccccccCCCeEEEEee--CC--CCceEEecCC-------CCCCCcEEECCCCCCeEEEEHHHHHH
Confidence 46676532 335789999999999854 32 4677764211 01125788889999999999987
Q ss_pred ---------CCcCCccCCcceeEEEEEeec
Q 020122 310 ---------HRHGARATTSGSRVNLLVWCR 330 (331)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~r 330 (331)
.+|.+. +.+..||.+..|++
T Consensus 255 ~wTng~~kSt~HRVv-~~~~~R~Sia~F~~ 283 (332)
T PLN03002 255 RWSNGFFKSTLHRVL-GNGQERYSIPFFVE 283 (332)
T ss_pred HHhCCeeECcCCeec-CCCCCeeEEEEEec
Confidence 458886 33567999999985
No 54
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=74.25 E-value=6.7 Score=35.33 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=41.0
Q ss_pred ceeEEEEcCCCCCCccccccCCce-----eEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC
Q 020122 235 HGFVVEYGMDRDVELGFHVDDSEV-----TLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR 309 (331)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D~Sev-----TlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr 309 (331)
...|-.|.++ ..+++|.|+++. -++|+||. .+.|.= +.+ .+.+....+....|.+++-.|.
T Consensus 96 ~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~-----~r~F~~-~~~------~~~~~~~~l~L~sGsllvM~G~ 161 (169)
T TIGR00568 96 ACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGL-----PAIFLI-GGL------KRNDPPKRLRLHSGDVVIMGGE 161 (169)
T ss_pred EEEEEeecCC--CccccccccccccCCCCEEEEeCCC-----CEEEEe-cCC------cCCCceEEEEeCCCCEEEECCc
Confidence 4567789988 489999998765 35666653 222321 110 1112234567899999999888
Q ss_pred ---CCcC
Q 020122 310 ---HRHG 313 (331)
Q Consensus 310 ---h~He 313 (331)
.+||
T Consensus 162 sR~~~Hg 168 (169)
T TIGR00568 162 SRLAFHG 168 (169)
T ss_pred hhccccC
Confidence 5555
No 55
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=73.49 E-value=7.9 Score=38.17 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=58.2
Q ss_pred EEEEcC----CCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC----
Q 020122 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (331)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (331)
+.+|.+ +.--.+++|.|.|-+|+.+. ++ +=|||.+.. +..+++.+.|.+|.-|+.-|.
T Consensus 180 ~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlq--d~-~V~GLQv~~-----------~dg~Wi~V~P~p~a~vVNiGD~l~~ 245 (322)
T KOG0143|consen 180 LNYYPPCPEPELTLGLGAHTDKSFLTILLQ--DD-DVGGLQVFT-----------KDGKWIDVPPIPGAFVVNIGDMLQI 245 (322)
T ss_pred EeecCCCcCccccccccCccCcCceEEEEc--cC-CcCceEEEe-----------cCCeEEECCCCCCCEEEEcccHHhH
Confidence 567755 44556889999999887664 22 445666553 124677889999999999864
Q ss_pred --------CCcCCccCCcceeEEEEEee
Q 020122 310 --------HRHGARATTSGSRVNLLVWC 329 (331)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~ 329 (331)
.+|.+.....+.||.+..|+
T Consensus 246 lSNG~ykSv~HRV~~n~~~~R~Sia~F~ 273 (322)
T KOG0143|consen 246 LSNGRYKSVLHRVVVNGEKERISVAFFV 273 (322)
T ss_pred hhCCcccceEEEEEeCCCCceEEEEEEe
Confidence 67999999989999998886
No 56
>PHA02866 Hypothetical protein; Provisional
Probab=68.47 E-value=57 Score=32.51 Aligned_cols=151 Identities=11% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHh-cccccccCCccccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhccCccCC
Q 020122 150 IPGIYTFEMLQPRFCEMLLSEVEN-FERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGG 228 (331)
Q Consensus 150 ~P~Vy~fpvfs~~fC~~LIee~E~-f~~ws~~s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~~l~Pl~~~lfp~~~g 228 (331)
..||.+...|..+|=. ..+++.. ...|-. |+. -| +.+.-.+..--.+--+...+..+ .++-+.+.-+|.+.
T Consensus 5 ~~~~~~~~~f~~~f~~-i~~~~~~m~~~w~~-s~i--~~--~~~~i~~~~~~~~k~k~~~~v~~-~v~~~~~~~~~~~d- 76 (333)
T PHA02866 5 TDGVLRLKSFRDDFKG-IKEELKFMLNSWED-SDI--LR--HRQFIPCEILVLEKSERTKQVFG-AVKRVLASSLTDYD- 76 (333)
T ss_pred eCCeEEEEEhhhhhhh-HHHHHHHHHhccch-hhh--hh--hccCCceeeeehhhhhhhHHHHH-HHHHHHhccCCCcc-
Confidence 4688888899888543 3333332 123622 222 11 11111111000111122233332 23333333344431
Q ss_pred CCCcccceeEEEEcCCCCCCcccccc----C----CceeEEEeecccccccceEEecccccccccccccccccccccCCC
Q 020122 229 STLDSHHGFVVEYGMDRDVELGFHVD----D----SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVP 300 (331)
Q Consensus 229 ~~Lds~~~FVVrY~~~~d~~L~~H~D----~----SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~ 300 (331)
--++.|.. +|+|..+- +|.-|+| + -+++|.++|+.-=+||++.++-..++. ...
T Consensus 77 v~v~~~~t-~vk~~kg~--~fdn~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~---------------i~~ 138 (333)
T PHA02866 77 VYVCEHLT-IVKCFKGV--GFDNRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTV---------------IST 138 (333)
T ss_pred EEEeeeEE-EEEEeccc--ccccceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCce---------------Eee
Confidence 22355655 58887755 6666665 2 369999999999999999998444432 233
Q ss_pred cEEEEecCCCCcCCccCCcceeEEEE
Q 020122 301 GYAVLHRGRHRHGARATTSGSRVNLL 326 (331)
Q Consensus 301 G~AllH~Grh~HeglpVTsG~Ry~LV 326 (331)
-.=+||--+..|+..-|.+|++++++
T Consensus 139 ~~DvLFDKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 139 ADDFLLEKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred ccceeeeccccccceeeecCcEEEEE
Confidence 45689999999999999999998764
No 57
>PHA02923 hypothetical protein; Provisional
Probab=63.21 E-value=21 Score=35.40 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=59.3
Q ss_pred cccceeEEEEcCCCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCCC
Q 020122 232 DSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHR 311 (331)
Q Consensus 232 ds~~~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~ 311 (331)
+.+-.| ++|.++.+-.+ .| |+-++.|.++|+..=+||.+.+....-. ...-.=+||--+.-
T Consensus 66 ~n~iT~-ikYekgd~~~l-~~-~~~~y~LvLyL~~p~~GGt~i~~~~~t~----------------i~~~~DvLFdKsl~ 126 (315)
T PHA02923 66 SSTISF-IKYNPFNDTTL-TD-DNMGYYLVIYLNRPKSGKTLIYPTPETV----------------ITSSEDIMFSKSLN 126 (315)
T ss_pred eceEEE-EEEcCCCccee-ec-CceEEEEEEEEeccCCCCeEEEecCCCe----------------Eeeccceeeecccc
Confidence 445554 89999886555 34 6678999999998778999998876522 23345689999999
Q ss_pred cCCccCCcceeEEEEE
Q 020122 312 HGARATTSGSRVNLLV 327 (331)
Q Consensus 312 HeglpVTsG~Ry~LV~ 327 (331)
|+-.-|.+|++.+++.
T Consensus 127 h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 127 FRFENVKRGYKLVMCS 142 (315)
T ss_pred cceeeeecCcEEEEEE
Confidence 9999999999997654
No 58
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=52.16 E-value=29 Score=33.58 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=58.2
Q ss_pred CccChhHHHHhhhhcHHHHhhhhcccCCeEEEecCCCHHHHHHHHHHHHhccc-----ccccC----CccccccCCCCcc
Q 020122 124 SVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFER-----WVHDT----RFRIMRPNTMNKF 194 (331)
Q Consensus 124 ~yl~p~f~~ai~~~~~~~~~~~~~e~~P~Vy~fpvfs~~fC~~LIee~E~f~~-----ws~~s----~~~i~rpn~mN~y 194 (331)
+||.|.|++. .+.+.+.....+. .-|---.+|.+++++.|-+.++.-+. +.... +-.+..|-+..+|
T Consensus 8 ~~InP~YL~~---~~~~~i~~~F~e~-S~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY 83 (266)
T PF10637_consen 8 KWINPSYLTP---DTIEQIQEQFEEE-SEIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRY 83 (266)
T ss_dssp TTB-HHHCSH---HHHHHHHHHHHHH-SEEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-
T ss_pred HhcCchhcCH---HHHHHHHHHHHhc-ceEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhhe
Confidence 5777777653 2222333333222 45666689999999999988864331 00000 0122345555566
Q ss_pred ceecccc----------ChHHH-------HHHHHHHhhhhhhhhccCccCCCCCcccceeEEEEcCCCCCCcccccc--C
Q 020122 195 GAVLDDF----------GLETM-------LDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVD--D 255 (331)
Q Consensus 195 gvvLdd~----------Gl~~~-------~~~Ll~~~l~Pl~~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D--~ 255 (331)
-.+-..- ++... +..|+. +....++.-.+.|-.+-++...+-|+++|.|=-|.-..| +
T Consensus 84 ~~~~~~~~~~~~~~~~~pl~e~~~~~l~~l~~lf~---S~aF~~~L~~~TgL~l~~~~~~~RRfr~G~dYTLa~~~~~~~ 160 (266)
T PF10637_consen 84 LYLDPKSEASINSDNKSPLPELPPFLLRELMDLFK---SEAFFKWLSNLTGLDLTSCQIEARRFRPGLDYTLATDEDEEE 160 (266)
T ss_dssp EEE-SSSHHHHHHHH---------SHHHHHHHHHH---SHHHHHHHHHHHSEEE-EEEEEEEEE-TTT-EE--B---EEE
T ss_pred eEeCCcccccccccccccccchhHHHHHHHHHHcC---CHHHHHHHHHHHCCCCccCceEEEEccCCCCeEEecCCCCCc
Confidence 5542222 12111 122211 111111111122223334455577788886555555555 3
Q ss_pred CceeEEEeec-c------cccccceEEec
Q 020122 256 SEVTLNVCLG-R------EFSGGELFFRG 277 (331)
Q Consensus 256 SevTlNI~Ln-~------dFeGGgl~F~~ 277 (331)
..+-+++||+ . ++.|-++|..+
T Consensus 161 ~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~ 189 (266)
T PF10637_consen 161 PRLDVTLCLTPSKGWESGEVGGYECYMAG 189 (266)
T ss_dssp EEEEEEEEE---S-TTTTTT---EEEEE-
T ss_pred eEEEEEEEecCCCCCCCCccccEEEEEcC
Confidence 4455555554 2 67777888744
No 59
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=42.95 E-value=37 Score=33.65 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=50.8
Q ss_pred cccee-ccccChHHHHHHHHHHhhhhhhhhccCccCC-CCCcccceeEEEEcCCCCCCccccccCCc------eeEEEee
Q 020122 193 KFGAV-LDDFGLETMLDKLMNDFIRPISKVFFPEVGG-STLDSHHGFVVEYGMDRDVELGFHVDDSE------VTLNVCL 264 (331)
Q Consensus 193 ~ygvv-Ldd~Gl~~~~~~Ll~~~l~Pl~~~lfp~~~g-~~Lds~~~FVVrY~~~~d~~L~~H~D~Se------vTlNI~L 264 (331)
.||++ +|++.=...-+..+-+.+.|+-..+|.+.-. ++--++. -.-|. --.|++|+|++- +-+-=||
T Consensus 136 ~YGi~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~--DTAYt---kl~lg~HTD~TYF~~~~GiQvfHCl 210 (371)
T KOG3889|consen 136 KYGIIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYE--DTAYT---KLELGPHTDGTYFDQTPGIQVFHCL 210 (371)
T ss_pred heeEEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccc--cccce---eeeecccCCCceeccCCCceEEEee
Confidence 48887 4555444445555556889999999965311 1100111 12243 237999999865 4667788
Q ss_pred cccccccceEEec
Q 020122 265 GREFSGGELFFRG 277 (331)
Q Consensus 265 n~dFeGGgl~F~~ 277 (331)
.-.=+||++.|-+
T Consensus 211 ~h~gtGG~t~lVD 223 (371)
T KOG3889|consen 211 THAGTGGDTVLVD 223 (371)
T ss_pred cccCCCCceEEEe
Confidence 8888999999964
No 60
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=42.19 E-value=61 Score=32.10 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=25.5
Q ss_pred CCccccccCC------ceeEEEeecccccccceEEec
Q 020122 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (331)
Q Consensus 247 ~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~ 277 (331)
..+.+|+|.+ .+++.-|+...=+||++.|..
T Consensus 185 ~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 185 GGLPFHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred ccccccccCCccCCCCceeeeeecccCCCCcceeeee
Confidence 3688999976 378888997778899999975
No 61
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=40.66 E-value=14 Score=30.16 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=23.8
Q ss_pred hhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCCch
Q 020122 54 PLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDG 91 (331)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 91 (331)
|.+|.-|| +.||-.|-.|.|++|++|+.++
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~ 47 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEI 47 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhc
Confidence 45666665 6788899999999999998654
No 62
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=40.03 E-value=71 Score=31.73 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=25.9
Q ss_pred CCccccccCC------ceeEEEeecccccccceEEec
Q 020122 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (331)
Q Consensus 247 ~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~ 277 (331)
..+.+|+|.+ .+++.-|+...=+||++.|..
T Consensus 177 ~~l~~HtD~~y~~~pp~~~~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 177 LAIDMHTDGTYWDETPGLQLFHCLTHDGTGGETVLVD 213 (362)
T ss_pred CCccccccCCCCCCCCcceeEeeeecCCCCCceeeee
Confidence 3688999975 478889997667999999975
No 63
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=39.05 E-value=55 Score=30.44 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.4
Q ss_pred CCCccccccCC------ceeEEEeecccccccceEEec
Q 020122 246 DVELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (331)
Q Consensus 246 d~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~ 277 (331)
...+.+|+|.+ .+.+.-|+...-+||++.|..
T Consensus 93 ~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 93 NTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred cCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 45789999975 689999998778899999975
No 64
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=37.83 E-value=47 Score=32.25 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=59.2
Q ss_pred HHhhhhcccCCeEEEe-cCCCHHHHHHHHHHHHhcccccccCCccccccCCCCcccee---------ccc-cChHHHHHH
Q 020122 141 SFRSIMAEPIPGIYTF-EMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAV---------LDD-FGLETMLDK 209 (331)
Q Consensus 141 ~~~~~~~e~~P~Vy~f-pvfs~~fC~~LIee~E~f~~ws~~s~~~i~rpn~mN~ygvv---------Ldd-~Gl~~~~~~ 209 (331)
+...-..-|.|||... .++|.++=.+||..++.. .|.. |... +| ..+||-- ++. .||-..-+.
T Consensus 62 ~~~~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~-pW~~-SQSG-RR---KQdyGPKvNFkk~Klkt~~F~G~P~~~~~ 135 (306)
T KOG3959|consen 62 SVSTDGSIPIPGLTLIENFLSESEEAKLLNMIDTV-PWAQ-SQSG-RR---KQDYGPKVNFKKKKLKTDTFVGMPEYADM 135 (306)
T ss_pred ccccCCccccCCeeehhhhhccchHhHHHHHhccC-chhh-hccc-cc---ccccCCccchhhhhhccCcccCCchHHHH
Confidence 3333456689999999 699999999999999976 3522 1111 11 1234421 222 355433222
Q ss_pred HHHHhhhhhhhhccCccCCCCCcccceeEEEEcCCCCCCccccccCC
Q 020122 210 LMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDS 256 (331)
Q Consensus 210 Ll~~~l~Pl~~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~S 256 (331)
++++ + -.||...|. ....---..|.|.+...+.||.|+.
T Consensus 136 v~rr----m--~~yp~l~gf--qp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 136 VLRR----M--SEYPVLKGF--QPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred HHHH----h--hccchhhcc--CcHHHcCcccccccCCccCccccch
Confidence 2221 1 134544442 2222224789999999999999974
No 65
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=37.32 E-value=45 Score=31.67 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHhhhhhhhhccCcc------CCCCCcccceeEEEEcCCCCCCccccccCCceeEEEee------ccccc
Q 020122 202 GLETMLDKLMNDFIRPISKVFFPEV------GGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCL------GREFS 269 (331)
Q Consensus 202 Gl~~~~~~Ll~~~l~Pl~~~lfp~~------~g~~Lds~~~FVVrY~~~~d~~L~~H~D~SevTlNI~L------n~dFe 269 (331)
.+-..|+.|..+||-|+.+.+..+. ++.......+.||-...+ ..-.+=.+-+.+|-++.. +-+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d--~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTAD--CYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccC--CCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 4558999999999999999887432 111123445555544332 234444455666666655 34899
Q ss_pred ccceE
Q 020122 270 GGELF 274 (331)
Q Consensus 270 GGgl~ 274 (331)
|||.-
T Consensus 103 GGG~e 107 (226)
T PF11265_consen 103 GGGFE 107 (226)
T ss_pred CCCcc
Confidence 98854
No 66
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=33.31 E-value=12 Score=38.92 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=45.0
Q ss_pred eEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCC--CCcCCccCCcceeEEEEEee
Q 020122 259 TLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGARATTSGSRVNLLVWC 329 (331)
Q Consensus 259 TlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--h~HeglpVTsG~Ry~LV~W~ 329 (331)
.....+++||+||++.|....-.. ++. ..+++.|.-+-+..+ .-|+..+||+|.|-.+-.|-
T Consensus 369 ~a~~~~~dd~~~~el~~t~~d~~t-~~a--------~~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~ 432 (471)
T KOG4459|consen 369 FALLYLNDDFEGGELLFTEPDAKT-YTA--------ISKPECGRECAFSSGAENPHGVKAVTKGLECAVALWP 432 (471)
T ss_pred hccHhhcCccccccceecCCcccc-hhh--------ccccccccchhhhccccCccchhhhhhhhHHhhhcCc
Confidence 334456899999999998654321 211 236777877777666 88999999999998877774
No 67
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=32.47 E-value=34 Score=30.90 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=26.3
Q ss_pred CCccccccCC------ceeEEEeecccccccceEEecc
Q 020122 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRGV 278 (331)
Q Consensus 247 ~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~~ 278 (331)
..+.+|+|.| .+.+..|+...-+||++.|...
T Consensus 95 ~~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 95 GELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADA 132 (258)
T ss_dssp SGEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEH
T ss_pred cccccccccCcccCCcceeEEEeeccCCCCCccccccH
Confidence 4699999998 6899999987779999999753
No 68
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=30.89 E-value=1.6e+02 Score=22.97 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=20.0
Q ss_pred ccCCCcEEEEecCCCCcCCccCCc-ceeEEEEE
Q 020122 296 YSHVPGYAVLHRGRHRHGARATTS-GSRVNLLV 327 (331)
Q Consensus 296 y~~~~G~AllH~Grh~HeglpVTs-G~Ry~LV~ 327 (331)
|..++|.+++.+....|...+... +.++..|.
T Consensus 43 ~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 43 YPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred EEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 456889999999999998887775 55555554
No 69
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=28.90 E-value=7e+02 Score=26.17 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=95.7
Q ss_pred ccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccccccCCCCcccee--ccccChH---HHHHHHHHHhhhhhhhhc
Q 020122 148 EPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAV--LDDFGLE---TMLDKLMNDFIRPISKVF 222 (331)
Q Consensus 148 e~~P~Vy~fpvfs~~fC~~LIee~E~f~~ws~~s~~~i~rpn~mN~ygvv--Ldd~Gl~---~~~~~Ll~~~l~Pl~~~l 222 (331)
.|.+-+..=+++++.--+..-.|++++..|.. ...++-| .++-|=+ ++.+.+. .+=+.|.+++-.-++
T Consensus 34 gPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~-k~tDlyr---~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~q--- 106 (476)
T KOG3844|consen 34 GPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTE-KETDLYR---VLQTGDLANLEGLEFPALFSFRDSLYKEARGEIQ--- 106 (476)
T ss_pred CCCcceeeeccCCHHHHHHHHHHHhhccchhh-hcchhhh---eeccccccccccccchhHHHHHHHHHHHHHHHHH---
Confidence 46666666678887777777767777666522 2222211 1122211 2222221 111222222222221
Q ss_pred cCccCCCCC-cccceeEEEEcCCCCCCccccccCC---ceeEEEeec--c---cccccceEEeccccccccccccccccc
Q 020122 223 FPEVGGSTL-DSHHGFVVEYGMDRDVELGFHVDDS---EVTLNVCLG--R---EFSGGELFFRGVRCDKHVNTETQSEEI 293 (331)
Q Consensus 223 fp~~~g~~L-ds~~~FVVrY~~~~d~~L~~H~D~S---evTlNI~Ln--~---dFeGGgl~F~~~~c~~~v~~~~~~~e~ 293 (331)
.+.|..+ .....++-+|..+. +|-.|-|-- .+++-.+|- + +| ||+|+.....|.-. .+ .-+
T Consensus 107 --~vtg~~s~sk~Dms~s~Y~kgd--~LL~HDD~ietRriaFilYL~~~Dwds~~-GG~L~Lf~~d~~~~----P~-s~~ 176 (476)
T KOG3844|consen 107 --DVTGGLSTSKIDMSGSYYRKGD--HLLCHDDVIETRRIAFILYLVDPDWDSEY-GGELRLFPDDCPSQ----PK-SVA 176 (476)
T ss_pred --hccCccccceeeeceeeeeccc--eeccccccccceEEEEEEEecCccccccc-CceeEecccccccC----cc-chh
Confidence 2222211 12356688998876 999999954 489999994 2 56 99999988777421 11 123
Q ss_pred ccccCCCcEEEEecCC--CCcCCccCCcce-eEEEEEeecC
Q 020122 294 LDYSHVPGYAVLHRGR--HRHGARATTSGS-RVNLLVWCRR 331 (331)
Q Consensus 294 ~~y~~~~G~AllH~Gr--h~HeglpVTsG~-Ry~LV~W~rs 331 (331)
..+.|.--+.++|.=. -.|.+-.|.+-. |..+-+|.++
T Consensus 177 asl~P~~Nql~fFeVsp~SFH~V~Ev~sde~RlSIsGWfH~ 217 (476)
T KOG3844|consen 177 ASLEPQWNQLVFFEVSPISFHDVEEVLSDEPRLSISGWFHF 217 (476)
T ss_pred hccCcccceEEEEEecccchhhHHHHhccCcceeEeeeecC
Confidence 4456777778887666 788888877544 7888899763
No 70
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=24.44 E-value=3.5e+02 Score=25.93 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=33.2
Q ss_pred eEEEecCCCHHHHHHHHHHHHhccc--ccccCCc---cccccCCCCcccee-cccc-ChHHHHHHHHH
Q 020122 152 GIYTFEMLQPRFCEMLLSEVENFER--WVHDTRF---RIMRPNTMNKFGAV-LDDF-GLETMLDKLMN 212 (331)
Q Consensus 152 ~Vy~fpvfs~~fC~~LIee~E~f~~--ws~~s~~---~i~rpn~mN~ygvv-Ldd~-Gl~~~~~~Ll~ 212 (331)
-+.|.|+++.+..+.+++.+.+-+. |-. ..+ +...+..|+.-|.+ +|-. +|+..+..++.
T Consensus 160 ~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~-~El~v~~~~~~~gm~GSGm~iiNPPw~l~~~l~~~l~ 226 (245)
T PF04378_consen 160 YAIWYPIKDRERVDRFLRALKALGIKKVLR-AELRVRPPDSPRGMNGSGMLIINPPWTLDEELEEILP 226 (245)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHH-SSE-EE-EEEE---SS---S--EEEEEEES--TTHHHHHHHHHH
T ss_pred EEEEeecccHHHHHHHHHHHHhcCCCCeEE-EEEEecCCCCcCceecceEEEEcCCccHHHHHHHHHH
Confidence 4556799999999999999886431 100 111 12234568888876 4443 77766666554
No 71
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=23.04 E-value=6e+02 Score=23.38 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=53.2
Q ss_pred cChHHHHHHHHHHhhhhhhhhccCccCCCCCcccceeEEEEcCCCCCCccccccCCceeEEEeecccccccc-eEEeccc
Q 020122 201 FGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGE-LFFRGVR 279 (331)
Q Consensus 201 ~Gl~~~~~~Ll~~~l~Pl~~~lfp~~~g~~Lds~~~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGg-l~F~~~~ 279 (331)
+.|.++++.=.. .|-|.++...+-....|.|..-.+......+|.+.++=.+-+- +|.- +.+.+.+
T Consensus 7 ~n~~~Wieen~~--------~l~pPv~n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE~Fyql-----eG~~~l~v~d~g 73 (177)
T PRK13264 7 FNLHKWIEEHRH--------LLKPPVGNKQIWQDSDFIVMVVGGPNARTDFHYDPGEEFFYQL-----EGDMYLKVQEDG 73 (177)
T ss_pred ccHHHHHHhhHH--------HhCCCCCCeeeEcCCCEEEEEEccCCcccccccCCCceEEEEE-----CCeEEEEEEcCC
Confidence 566666544332 2334454443322224556655555558999998876433332 2321 1121100
Q ss_pred ccccccccccccccccccCCCcEEEEecCCCCcCCccCCcceeEEE
Q 020122 280 CDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNL 325 (331)
Q Consensus 280 c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~L 325 (331)
+..++..++|.+++.|+...|.-.. ..|+.-.+
T Consensus 74 ------------~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~Lv 106 (177)
T PRK13264 74 ------------KRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLV 106 (177)
T ss_pred ------------ceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEE
Confidence 0012356889999999999998866 34544333
No 72
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.28 E-value=3e+02 Score=27.68 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=44.9
Q ss_pred eeEEEEcCCCCCCccccccCCceeEEEeecccccccceEEecccccccccccccccccccccCCCcEEEEecCCCCcCCc
Q 020122 236 GFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGAR 315 (331)
Q Consensus 236 ~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~Hegl 315 (331)
...+++.++.-..+-+| .+.|+.+-+. |.+++.=.+. ..+.+.....+|..+++|....|.-.
T Consensus 69 ~~~~~l~pG~~~~~HwH-~~~E~~yVl~-------G~~~v~~~d~---------~g~~~~~~L~~GD~~~fP~g~~H~~~ 131 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWH-KEAEWAYVLY-------GSCRITAVDE---------NGRNYIDDVGAGDLWYFPPGIPHSLQ 131 (367)
T ss_pred ceEEEEcCCCCCCcccC-CCceEEEEEe-------eEEEEEEEcC---------CCcEEEeEECCCCEEEECCCCeEEEE
Confidence 34577888876666677 4566544332 2222221110 01122224789999999999999988
Q ss_pred cCCcceeEEEE
Q 020122 316 ATTSGSRVNLL 326 (331)
Q Consensus 316 pVTsG~Ry~LV 326 (331)
.+..+.+++++
T Consensus 132 n~~~~~~~l~v 142 (367)
T TIGR03404 132 GLDEGCEFLLV 142 (367)
T ss_pred ECCCCeEEEEE
Confidence 88777776553
No 73
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=21.72 E-value=1.4e+02 Score=31.36 Aligned_cols=81 Identities=12% Similarity=0.280 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhhhh-hhhhHHHHHHHhhcCC---CCCccccccCCCCccChhHHHHhhhhcH------
Q 020122 70 SMSRDVKFQYMRDILMKYSRDGERTR-VQRHKEYRQRIISNYQ---PLHRELFTMHAPSVLVPAFVKAVRDNTE------ 139 (331)
Q Consensus 70 ~~~~~~~~~~~~~il~~~~~~~~r~~-~~~~~~~~~~I~~~Y~---~lhpdly~l~~e~yl~p~f~~ai~~~~~------ 139 (331)
+.+-++|..++......-++-.+-.. +++-.+-+ .|-..|. |.. | +|+.|+|.+.+++..+
T Consensus 1 ~Lt~~QK~~~LA~~AE~~l~~~~i~~~~~~~~~~g-~ICDmfEGhAPyr-------P-RYilPDY~kfl~qGs~fLeL~p 71 (487)
T PF11230_consen 1 TLTYEQKVHFLALEAENSLPYLNISEETREAMEEG-IICDMFEGHAPYR-------P-RYILPDYAKFLKQGSEFLELEP 71 (487)
T ss_pred CCCHHHHHHHHHHHHHhcCCccCCCHHHHHHHhcC-ccccccCCCCCCC-------C-ceeCccHHHHHhccchhcccCC
Confidence 45678999999998888777554433 22222222 3333333 221 3 7999999999996531
Q ss_pred -----HHHhh--hhcccCCeEEEecCC
Q 020122 140 -----ASFRS--IMAEPIPGIYTFEML 159 (331)
Q Consensus 140 -----~~~~~--~~~e~~P~Vy~fpvf 159 (331)
+++.. |+=-+.|-|-.|||+
T Consensus 72 p~DldeAln~L~IlY~HVPSVT~~PVy 98 (487)
T PF11230_consen 72 PKDLDEALNNLLILYHHVPSVTSFPVY 98 (487)
T ss_pred cccHHHHHHhhhHHhhcCCccCCccce
Confidence 34433 334578888888875
No 74
>PF09864 MliC: Membrane-bound lysozyme-inhibitor of c-type lysozyme; InterPro: IPR018660 This entry contains proteins that represent a novel family of bacterial lysozyme inhibitors with widespread homologues in Gram-negative bacteria, that may function as colonization or virulence factors in bacteria interacting with an animal host []. ; PDB: 3OE3_F 2F09_A 3F6Z_D.
Probab=20.61 E-value=1.1e+02 Score=23.02 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=33.8
Q ss_pred ceeEEEEcCCCCCCccccccCCceeEEEee---cccccccceEEecc
Q 020122 235 HGFVVEYGMDRDVELGFHVDDSEVTLNVCL---GREFSGGELFFRGV 278 (331)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D~SevTlNI~L---n~dFeGGgl~F~~~ 278 (331)
..|.|+|..+.+.....-+++.+++|.... |.-|++|++.|..-
T Consensus 7 ~~i~v~~~~~~~~~a~l~~~~~~~~L~~~~SaSGarY~~~~~~~w~k 53 (72)
T PF09864_consen 7 QRISVTYINDDDPSAVLRYDDQEYTLPQAPSASGARYSNGGYEFWTK 53 (72)
T ss_dssp CEEEEEEEECTTEEEEEECCTEEEEEEEECTSSSEEEECCTEEEEEE
T ss_pred CEEEEEEcCCCCcEEEEEECCEEEEEEEeecCCCCcEeCCCEEEEEE
Confidence 467899988876556666777788888877 35799999999853
Done!