Query 020123
Match_columns 331
No_of_seqs 139 out of 1411
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 3.7E-39 1.3E-43 302.7 20.4 225 2-330 66-298 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 1.1E-35 3.8E-40 282.7 19.5 224 2-329 83-315 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 6.6E-36 2.3E-40 283.8 17.4 225 2-329 85-316 (332)
4 2an1_A Putative kinase; struct 99.3 3E-11 1E-15 112.0 11.9 55 2-74 66-121 (292)
5 2i2c_A Probable inorganic poly 99.1 6.3E-10 2.1E-14 102.2 11.1 58 2-75 38-96 (272)
6 1yt5_A Inorganic polyphosphate 99.0 6.6E-10 2.3E-14 101.3 9.0 43 277-329 195-237 (258)
7 1u0t_A Inorganic polyphosphate 98.9 5.4E-09 1.8E-13 97.6 10.6 56 2-74 78-133 (307)
8 3afo_A NADH kinase POS5; alpha 96.1 0.0078 2.7E-07 57.5 6.7 62 2-80 117-179 (388)
9 1z0s_A Probable inorganic poly 90.7 0.28 9.6E-06 44.5 5.2 52 2-67 71-122 (278)
10 3pfn_A NAD kinase; structural 89.9 0.65 2.2E-05 43.8 7.2 45 280-328 297-342 (365)
11 1pfk_A Phosphofructokinase; tr 44.2 21 0.0007 32.8 4.3 36 2-45 97-132 (320)
12 1zxx_A 6-phosphofructokinase; 39.0 21 0.00071 32.8 3.5 36 2-45 96-131 (319)
13 2hig_A 6-phospho-1-fructokinas 36.4 29 0.00098 33.8 4.2 41 2-45 192-233 (487)
14 4a3s_A 6-phosphofructokinase; 31.1 37 0.0013 31.0 3.8 41 2-50 96-139 (319)
15 3gw6_A Endo-N-acetylneuraminid 29.9 18 0.00061 32.3 1.4 13 2-14 48-60 (275)
16 2x9a_A Attachment protein G3P; 25.7 17 0.00059 24.9 0.4 10 3-12 41-50 (65)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=3.7e-39 Score=302.70 Aligned_cols=225 Identities=23% Similarity=0.244 Sum_probs=157.5
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCeeeeeEEE
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWH 81 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~~~iDi~~ 81 (331)
.||++|||||||+|+|++... ..++|||+||.||+|||||+||++. ++.+|+ +.|.+|+.+++|+|+
T Consensus 66 ~vv~~GGDGTl~~v~~~l~~~-----~~~~~l~iiP~Gt~N~~ar~lg~~~----~~~~a~----~~i~~g~~~~iDlg~ 132 (304)
T 3s40_A 66 LIIVFGGDGTVFECTNGLAPL-----EIRPTLAIIPGGTCNDFSRTLGVPQ----NIAEAA----KLITKEHVKPVDVAK 132 (304)
T ss_dssp EEEEEECHHHHHHHHHHHTTC-----SSCCEEEEEECSSCCHHHHHTTCCS----SHHHHH----HHHTTCCEEEEEEEE
T ss_pred EEEEEccchHHHHHHHHHhhC-----CCCCcEEEecCCcHHHHHHHcCCCc----cHHHHH----HHHHhCCeEEEEEEE
Confidence 589999999999999999853 2578999999999999999999965 455554 457789999999998
Q ss_pred EEEecCCCCccCCCCCCCCCCcccccccccccCCCCcccccccceEeeeeecchhHHHhhhhhhccccCCCccccCCCcc
Q 020123 82 AVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNK 161 (331)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~F~n~~~iG~dA~v~~~~~~~r~~~~~~~~~~~~~k 161 (331)
+ ++++|+|++|+||||++++.++..+ | .+ .|+
T Consensus 133 v----------------------------------------~~~~F~~~~~~G~da~v~~~~~~~~--k-----~~-~G~ 164 (304)
T 3s40_A 133 A----------------------------------------NGQHFLNFWGIGLVSEVSNNIDAEE--K-----AK-LGK 164 (304)
T ss_dssp E----------------------------------------TTEEESSEEEEC--------------------------C
T ss_pred E----------------------------------------CCEEEEEEEeehHHHHHHHhcCHHH--h-----hc-CCc
Confidence 5 2579999999999999999887533 1 22 389
Q ss_pred ccccccccccccccccccCCCcccccccceeeeEeeeccCCceEeeeCCCcceEEEEeecccccCCCCCCCCCchhhhcc
Q 020123 162 LIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKK 241 (331)
Q Consensus 162 ~~Y~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~N~~~~ggg~~~w~~~~p~~~~~~ 241 (331)
++|++.+++.++..+ ..+++++ ++ ++.++ .++.+++|+|++|||||+. ++
T Consensus 165 ~~Y~~~~l~~l~~~~-------------~~~~~i~-~d---g~~~~--~~~~~v~v~N~~~~Ggg~~----~~------- 214 (304)
T 3s40_A 165 IGYYLSTIRTVKNAE-------------TFPVKIT-YD---GQVYE--DEAVLVMVGNGEYLGGIPS----FI------- 214 (304)
T ss_dssp HHHHTTTC------C-------------CEEEEEE-ET---TEEEE--EEEEEEEEECSSEETTEEC----SS-------
T ss_pred hHHHHHHHHHHhhcC-------------CceEEEE-EC---CEEEE--eEEEEEEEECCCcCCCCcc----cC-------
Confidence 999999988764332 1344443 33 35443 4688999999999999998 45
Q ss_pred CcccccCCCCeEEEEEecchhhHHH--HHHhhc------ccceeeeecEEEEEEcCCcceeceEEecCccccCCCCCCCc
Q 020123 242 GFVEAHADDGLLEIFGLKQGWHASF--VMVELI------SAKHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYS 313 (331)
Q Consensus 242 ~~~~a~~~DG~Lev~~~~~~~~~~~--~~~~l~------~g~~l~q~~~v~i~~~~~~~~~~~~qiDGE~~~~~p~~~~~ 313 (331)
|+|+++||+|||+++++.+...+ ++..+. ...+..++++++|+.+ +++++|+|||++..
T Consensus 215 --p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~----~~~~~~~DGE~~~~------- 281 (304)
T 3s40_A 215 --PNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETE----EEKEVDTDGESSLH------- 281 (304)
T ss_dssp --TTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEES----SCCEEEEC--CCEE-------
T ss_pred --CCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeC----CCcEEEeCCCCCCC-------
Confidence 49999999999999998654322 222222 2345679999999987 78999999999763
Q ss_pred eEEEEEeeccccccccC
Q 020123 314 TFVEIKRVPFQSLMISG 330 (331)
Q Consensus 314 ~~~~i~~~p~~~~~~~~ 330 (331)
++++|++.|.++.++..
T Consensus 282 ~p~~i~v~p~al~v~~p 298 (304)
T 3s40_A 282 TPCQIELLQGHFTMIYN 298 (304)
T ss_dssp SSEEEEEEEEEEEEECC
T ss_pred ceEEEEEECCeEEEEec
Confidence 35999999999998865
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=1.1e-35 Score=282.73 Aligned_cols=224 Identities=19% Similarity=0.187 Sum_probs=166.2
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCeeeeeEEE
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWH 81 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~~~iDi~~ 81 (331)
.||++||||||++|+|++... ..++||++||+||+|||||+||++. ++.+|++ .+.+|+.+++|+|+
T Consensus 83 ~vvv~GGDGTv~~v~~~l~~~-----~~~~pl~iIP~GT~N~lAr~Lg~~~----~~~~al~----~i~~g~~~~iD~g~ 149 (337)
T 2qv7_A 83 VLIAAGGDGTLNEVVNGIAEK-----PNRPKLGVIPMGTVNDFGRALHIPN----DIMGALD----VIIEGHSTKVDIGK 149 (337)
T ss_dssp EEEEEECHHHHHHHHHHHTTC-----SSCCEEEEEECSSCCHHHHHTTCCS----SHHHHHH----HHHHTCEEEEEEEE
T ss_pred EEEEEcCchHHHHHHHHHHhC-----CCCCcEEEecCCcHhHHHHHcCCCC----CHHHHHH----HHHcCCcEEEEEEE
Confidence 589999999999999999642 3678999999999999999999965 4555544 46669999999997
Q ss_pred EEEecCCCCccCCCCCCCCCCcccccccccccCCCCcccccccceEeeeeecchhHHHhhhhhhccccCCCccccCCCcc
Q 020123 82 AVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNK 161 (331)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~F~n~~~iG~dA~v~~~~~~~r~~~~~~~~~~~~~k 161 (331)
+ ++++|+|++++||||+++..++..+ | .++ |+
T Consensus 150 v----------------------------------------~~r~fl~~~~~G~~a~v~~~~~~~~--k-----~~~-G~ 181 (337)
T 2qv7_A 150 M----------------------------------------NNRYFINLAAGGQLTQVSYETPSKL--K-----SIV-GP 181 (337)
T ss_dssp E----------------------------------------TTEEESSEEEEECBCC---------------------CG
T ss_pred E----------------------------------------CCEEEEEEeeecccHHHHHHhhHHH--H-----hcc-Ch
Confidence 5 2579999999999999999877543 1 223 88
Q ss_pred ccccccccccccccccccCCCcccccccceeeeEeeeccCCceEeeeCCCcceEEEEeecccccCCCCCCCCCchhhhcc
Q 020123 162 LIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKK 241 (331)
Q Consensus 162 ~~Y~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~N~~~~ggg~~~w~~~~p~~~~~~ 241 (331)
++|...+++.++..+ ..++++. ++ ++.+ +.+...++++|++++|||+. +.
T Consensus 182 ~~Y~~~~l~~l~~~~-------------~~~~~i~-~d---g~~~--~~~~~~v~v~n~~~~gGg~~----i~------- 231 (337)
T 2qv7_A 182 FAYYIKGFEMLPQMK-------------AVDLRIE-YD---GNVF--QGEALLFFLGLTNSMAGFEK----LV------- 231 (337)
T ss_dssp GGSCCCTTTTGGGBC-------------CEEEEEE-ET---TEEE--EEEEEEEEEESSCCCSSCSC----SS-------
T ss_pred HHHHHHHHHHHHhCC-------------CccEEEE-EC---CEEE--EeeEEEEEEECCCCCCCCCc----cC-------
Confidence 999999988764322 2344443 33 3444 34688999999999999998 45
Q ss_pred CcccccCCCCeEEEEEecchhhHHH--HHHhhccc-------ceeeeecEEEEEEcCCcceeceEEecCccccCCCCCCC
Q 020123 242 GFVEAHADDGLLEIFGLKQGWHASF--VMVELISA-------KHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDY 312 (331)
Q Consensus 242 ~~~~a~~~DG~Lev~~~~~~~~~~~--~~~~l~~g-------~~l~q~~~v~i~~~~~~~~~~~~qiDGE~~~~~p~~~~ 312 (331)
|+|+++||.||+++++....+.+ ++..+..| .+..++++++|+.. ++.++++|||.+..
T Consensus 232 --P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~----~~~~~~iDGE~~~~------ 299 (337)
T 2qv7_A 232 --PDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSF----TDLQLNVDGEYGGK------ 299 (337)
T ss_dssp --TTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECS----SCCEEEETTEEEEE------
T ss_pred --CCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEEC----CCCeEEECCCcCCC------
Confidence 48999999999999998655444 23334444 34568899999875 68999999999863
Q ss_pred ceEEEEEeecccccccc
Q 020123 313 STFVEIKRVPFQSLMIS 329 (331)
Q Consensus 313 ~~~~~i~~~p~~~~~~~ 329 (331)
++++|++.|.+..+++
T Consensus 300 -~~i~i~v~p~~l~v~~ 315 (337)
T 2qv7_A 300 -LPANFLNLERHIDVFA 315 (337)
T ss_dssp -SCEEEEEEEEEEEEEC
T ss_pred -CcEEEEEEcCeEEEEe
Confidence 3599999999998875
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=6.6e-36 Score=283.83 Aligned_cols=225 Identities=21% Similarity=0.233 Sum_probs=165.8
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCeeeeeEEE
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWH 81 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~~~iDi~~ 81 (331)
.||++||||||++|+|++.... ...++||++||.||+|||||+||++. ++.++++ .+.+|+.+++|+|+
T Consensus 85 ~vvv~GGDGTl~~v~~~l~~~~---~~~~~plgiiP~Gt~N~fa~~l~i~~----~~~~al~----~i~~g~~~~iDlg~ 153 (332)
T 2bon_A 85 TVIAGGGDGTINEVSTALIQCE---GDDIPALGILPLGTANDFATSVGIPE----ALDKALK----LAIAGDAIAIDMAQ 153 (332)
T ss_dssp EEEEEESHHHHHHHHHHHHHCC---SSCCCEEEEEECSSSCHHHHHTTCCS----SHHHHHH----HHHHSEEEEEEEEE
T ss_pred EEEEEccchHHHHHHHHHhhcc---cCCCCeEEEecCcCHHHHHHhcCCCC----CHHHHHH----HHHcCCeEEeeEEE
Confidence 5899999999999999998531 02578999999999999999999964 4555554 45669999999998
Q ss_pred EEEecCCCCccCCCCCCCCCCcccccccccccCCCCcccccccc-eEeeeeecchhHHHhhhhhhccccCCCccccCCCc
Q 020123 82 AVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISN 160 (331)
Q Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~F~n~~~iG~dA~v~~~~~~~r~~~~~~~~~~~~~ 160 (331)
+ +++ +|+|++|+||||+|+..++..+ | .++ |
T Consensus 154 v----------------------------------------~~r~~fl~~~~~G~da~v~~~~~~~~--k-----~~~-G 185 (332)
T 2bon_A 154 V----------------------------------------NKQTCFINMATGGFGTRITTETPEKL--K-----AAL-G 185 (332)
T ss_dssp E----------------------------------------TTSCEESSEEEEEEEEEC-----------------CC-H
T ss_pred E----------------------------------------CCceEEEEEEeECccHHHHHHhhHHh--H-----hcc-c
Confidence 5 135 9999999999999998765432 1 233 8
Q ss_pred cccccccccccccccccccCCCcccccccceeeeEeeeccCCceEeeeCCCcceEEEEeecccccCCCCCCCCCchhhhc
Q 020123 161 KLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEK 240 (331)
Q Consensus 161 k~~Y~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~N~~~~ggg~~~w~~~~p~~~~~ 240 (331)
+++|++.+++.++..+ ..++++. ++ ++.++ .++.+++++|++|||||+. ++
T Consensus 186 ~~~Y~~~~l~~l~~~~-------------~~~~~i~-~d---g~~~~--~~~~~v~v~N~~~~ggg~~----i~------ 236 (332)
T 2bon_A 186 SVSYIIHGLMRMDTLQ-------------PDRCEIR-GE---NFHWQ--GDALVIGIGNGRQAGGGQQ----LC------ 236 (332)
T ss_dssp HHHHHHHHTSCEEEEE-------------CEEEEEE-ET---TEEEE--EEESEEEEESSSCBTTTBC----SC------
T ss_pred HHHHHHHHHHHHhhCC-------------CeeEEEE-EC---CEEEE--EEEEEEEEECCCccCCCcc----cC------
Confidence 9999998887653221 2334433 33 34443 4688999999999999998 45
Q ss_pred cCcccccCCCCeEEEEEecchhhH-HHHHHhhcc-----cceeeeecEEEEEEcCCcceeceEEecCccccCCCCCCCce
Q 020123 241 KGFVEAHADDGLLEIFGLKQGWHA-SFVMVELIS-----AKHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYST 314 (331)
Q Consensus 241 ~~~~~a~~~DG~Lev~~~~~~~~~-~~~~~~l~~-----g~~l~q~~~v~i~~~~~~~~~~~~qiDGE~~~~~p~~~~~~ 314 (331)
|+|+++||+||+++++.. .+ ..++..+.. ..++.++++++|+.. +++++|+|||.+. .+
T Consensus 237 ---P~a~~~DG~Ldv~iv~~~-~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~----~~~~~~iDGE~~~-------~~ 301 (332)
T 2bon_A 237 ---PNALINDGLLQLRIFTGD-EILPALVSTLKSDEDNPNIIEGASSWFDIQAP----HDITFNLDGEPLS-------GQ 301 (332)
T ss_dssp ---TTCCTTSSCEEEEEECCS-SCCHHHHHHHHTTCCCTTEEEEEESEEEEEEE----EEEEEEETTEEEE-------EE
T ss_pred ---CCCCCCCCeEEEEEECCH-HHHHHHHHHHHcCCCCCcEEEEEeeEEEEEEC----CCCeEEecCCCCC-------Cc
Confidence 489999999999999887 33 222333333 344568899999875 7899999999976 35
Q ss_pred EEEEEeecccccccc
Q 020123 315 FVEIKRVPFQSLMIS 329 (331)
Q Consensus 315 ~~~i~~~p~~~~~~~ 329 (331)
+++|++.|.+..++.
T Consensus 302 ~~~i~v~p~al~vl~ 316 (332)
T 2bon_A 302 NFHIEILPAALRCRL 316 (332)
T ss_dssp EEEEEEEEEEEEEEE
T ss_pred eEEEEEECCeeEEEe
Confidence 699999999988875
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.26 E-value=3e-11 Score=111.95 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=39.6
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCc-EEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCe
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 74 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~-lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~ 74 (331)
.||++|||||++++++++.. .+.| ||| |.||.|+|++ ++ + .++.++++ .+.+|+.
T Consensus 66 ~vi~~GGDGT~l~a~~~~~~-------~~~P~lGI-~~Gt~gfla~-~~-~----~~~~~al~----~i~~g~~ 121 (292)
T 2an1_A 66 LAVVVGGDGNMLGAARTLAR-------YDINVIGI-NRGNLGFLTD-LD-P----DNALQQLS----DVLEGRY 121 (292)
T ss_dssp EEEECSCHHHHHHHHHHHTT-------SSCEEEEB-CSSSCCSSCC-BC-T----TSHHHHHH----HHHTTCE
T ss_pred EEEEEcCcHHHHHHHHHhhc-------CCCCEEEE-ECCCcccCCc-CC-H----HHHHHHHH----HHHcCCC
Confidence 48999999999999999975 2345 666 8999888886 34 3 34555544 4555665
No 5
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.07 E-value=6.3e-10 Score=102.20 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=40.4
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCc-EEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCee
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPIC 75 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~-lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~~ 75 (331)
.||++|||||+.++++.+... ..++| ||+ |.|| |.|++.+. + .++.++ ++.+.+|+.+
T Consensus 38 ~vv~lGGDGT~l~aa~~~~~~-----~~~~PilGI-n~G~-lgfl~~~~-~----~~~~~~----l~~l~~g~~~ 96 (272)
T 2i2c_A 38 IVISIGGDGTFLSAFHQYEER-----LDEIAFIGI-HTGH-LGFYADWR-P----AEADKL----VKLLAKGEYQ 96 (272)
T ss_dssp EEEEEESHHHHHHHHHHTGGG-----TTTCEEEEE-ESSS-CCSSCCBC-G----GGHHHH----HHHHHTTCCE
T ss_pred EEEEEcCcHHHHHHHHHHhhc-----CCCCCEEEE-eCCC-CCcCCcCC-H----HHHHHH----HHHHHcCCCE
Confidence 589999999999999999752 12567 666 9999 56888774 2 344444 4456667653
No 6
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.02 E-value=6.6e-10 Score=101.28 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.9
Q ss_pred eeeecEEEEEEcCCcceeceEEecCccccCCCCCCCceEEEEEeecccccccc
Q 020123 277 IAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMIS 329 (331)
Q Consensus 277 l~q~~~v~i~~~~~~~~~~~~qiDGE~~~~~p~~~~~~~~~i~~~p~~~~~~~ 329 (331)
+.+.++++|+.. ++..+++|||.... .+.++|++.|.+..+|+
T Consensus 195 ~~~~~~i~i~~~----~~~~~~~DG~~~~~------~~~i~i~~~~~~~~li~ 237 (258)
T 1yt5_A 195 IPSNFKVVVESQ----RDINMLVDGVLTGK------TKRIEVKKSRRYVRILR 237 (258)
T ss_dssp EETTSCEEEEEE----EEEEEEETTEEEEE------EEEEEEEEEEEEEEEEE
T ss_pred ECCCCEEEEEEC----CCEEEEECCCccee------eEEEEEEECCCeEEEEE
Confidence 455678888874 78999999998642 22499999999888764
No 7
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.90 E-value=5.4e-09 Score=97.57 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=38.9
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCe
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 74 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~ 74 (331)
.||++|||||++++++.+... ..+.|| |+.||.|.|+. +. +.++.++++. +.+|+.
T Consensus 78 ~vi~~GGDGT~l~a~~~~~~~------~~pvlg-i~~G~~gfl~~-~~-----~~~~~~~~~~----i~~g~~ 133 (307)
T 1u0t_A 78 LVLVLGGDGTFLRAAELARNA------SIPVLG-VNLGRIGFLAE-AE-----AEAIDAVLEH----VVAQDY 133 (307)
T ss_dssp CEEEEECHHHHHHHHHHHHHH------TCCEEE-EECSSCCSSCS-EE-----GGGHHHHHHH----HHHTCC
T ss_pred EEEEEeCCHHHHHHHHHhccC------CCCEEE-EeCCCCccCcc-cC-----HHHHHHHHHH----HHcCCc
Confidence 378999999999999999752 233466 58999998885 42 2345555544 444654
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0078 Score=57.52 Aligned_cols=62 Identities=29% Similarity=0.331 Sum_probs=39.3
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCC-cEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHHHHhCCCeeeeeEE
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVP-PVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSW 80 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~-~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~~i~~g~~~~iDi~ 80 (331)
.||++|||||+..++..+.. ..+ |+--|+.||.+-|+ .+.. .+ +++.++.+.+|+......-
T Consensus 117 lVIvlGGDGTlL~aa~~~~~-------~~vpPiLGIN~G~lGFLt-~~~~-----~~----~~~al~~il~g~~~~~~r~ 179 (388)
T 3afo_A 117 LLVTLGGDGTILHGVSMFGN-------TQVPPVLAFALGTLGFLS-PFDF-----KE----HKKVFQEVISSRAKCLHRT 179 (388)
T ss_dssp EEEEEESHHHHHHHHHTTTT-------SCCCCEEEEECSSCCSSC-CEEG-----GG----HHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCcHHHHHHHHHhcc-------cCCCeEEEEECCCcccCC-cCCh-----HH----HHHHHHHHhcCCceEEEee
Confidence 48999999999999998864 233 44444999885554 3432 23 3444555667776443333
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=90.71 E-value=0.28 Score=44.55 Aligned_cols=52 Identities=29% Similarity=0.434 Sum_probs=34.4
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchhhhcCCCCCCCCchHHHHHHHHH
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQ 67 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfAr~lg~~~~~~~~~~~a~~~~l~ 67 (331)
.||++|||||+-.++..+.. . +|+--|..||-+=|+. + . +.+..++++++++
T Consensus 71 lvIvlGGDGT~L~aa~~~~~-------~-~PilGIN~G~lGFLt~-~--~---~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 71 FIVSVGGDGTILRILQKLKR-------C-PPIFGINTGRVGLLTH-A--S---PENFEVELKKAVE 122 (278)
T ss_dssp EEEEEECHHHHHHHHTTCSS-------C-CCEEEEECSSSCTTCC-B--B---TTBCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHhCC-------C-CcEEEECCCCCccccc-c--C---HHHHHHHHHHHHh
Confidence 47999999999999987643 3 7777778885554443 2 1 2345566665543
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=89.94 E-value=0.65 Score=43.78 Aligned_cols=45 Identities=11% Similarity=0.185 Sum_probs=29.9
Q ss_pred ecEEEEEEcCCcceeceEEecCccc-cCCCCCCCceEEEEEeeccccccc
Q 020123 280 AAAIRLEFRGGEWKDAFMQMDGEPW-KQPLNRDYSTFVEIKRVPFQSLMI 328 (331)
Q Consensus 280 ~~~v~i~~~~~~~~~~~~qiDGE~~-~~~p~~~~~~~~~i~~~p~~~~~~ 328 (331)
..+++|++....+....+.+||... ...+ -..|+|+..|....+|
T Consensus 297 ~~~I~i~v~~~~~~~~~vs~DG~~~~~l~~----gd~V~I~~s~~~~~li 342 (365)
T 3pfn_A 297 GVELKIMLSPEARNTAWVSFDGRKRQEIRH----GDSISITTSCYPLPSI 342 (365)
T ss_dssp TCCEEEEECTTCSSCEEEEETTEEEEEECT----TCEEEEEECSSCEEEE
T ss_pred CCEEEEEEccCCCCcEEEEEcCCeeeecCC----CCEEEEEECCCceEEE
Confidence 3457777642222457889999874 3333 3579999988887776
No 11
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=44.22 E-value=21 Score=32.81 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=29.0
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchh
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 45 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfA 45 (331)
.++++|||||+.-+. .|.+ ..+++--||-==-||+.
T Consensus 97 ~LvvIGGdgS~~~a~-~L~~-------~~i~vvgiPkTIDNDl~ 132 (320)
T 1pfk_A 97 ALVVIGGDGSYMGAM-RLTE-------MGFPCIGLPGTIDNDIK 132 (320)
T ss_dssp EEEEEECHHHHHHHH-HHHH-------TTCCEEEEEBCTTCCCT
T ss_pred EEEEECCCchHHHHH-HHHh-------hCCCEEEEeccccCCCC
Confidence 378999999987654 5554 36888889999999997
No 12
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=38.98 E-value=21 Score=32.77 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchh
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 45 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfA 45 (331)
.++++|||||+.-+. .|.+ ..+++--||-==-||+.
T Consensus 96 ~LvvIGGdgS~~~a~-~L~~-------~~i~vvgiPkTIDNDl~ 131 (319)
T 1zxx_A 96 AVVVIGGDGSYHGAL-QLTR-------HGFNSIGLPGTIDNDIP 131 (319)
T ss_dssp EEEEEECHHHHHHHH-HHHH-------TTCCEEEEEEETTCCCT
T ss_pred EEEEECCchHHHHHH-HHHH-------hCCCEEEEeecccCCCC
Confidence 378999999987654 5554 36888889999999997
No 13
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=36.40 E-value=29 Score=33.77 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=28.7
Q ss_pred EEEEEcCchhHHHHHHHhhhh-ccCCCCCCCcEEEeecCCCcchh
Q 020123 2 RIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 45 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~-~~~~~~~~~~lgiiP~GTgNdfA 45 (331)
.++++|||||+.-+. .|.+. .+ ...++++--||-==-||+.
T Consensus 192 ~LvvIGGdgS~~~A~-~L~e~~~~--~g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 192 ILFTVGGDGTQRGAL-VISQEAKR--RGVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp EEEEEECHHHHHHHH-HHHHHHHH--HTCCCEEEEEECCTTSSCC
T ss_pred EEEEeCCCchHHHHH-HHHHHHHH--hCCCceEEeccccccCCCC
Confidence 378999999988554 33321 00 0246889999999999996
No 14
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=31.09 E-value=37 Score=31.04 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=30.8
Q ss_pred EEEEEcCchhHHHHHHHhhhhccCCCCCCCcEEEeecCCCcchh---hhcCC
Q 020123 2 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 50 (331)
Q Consensus 2 ~viv~GGDGTl~~vvn~l~~~~~~~~~~~~~lgiiP~GTgNdfA---r~lg~ 50 (331)
.++++|||||+..+ +.|.+ ...++--||-==-||+. .++|+
T Consensus 96 ~L~~IGGdgS~~~a-~~l~~-------~~i~vigiPkTIDNDl~~td~t~Gf 139 (319)
T 4a3s_A 96 GLVVIGGDGSYMGA-KKLTE-------HGFPCVGVPGTIDNDIPGTDFTIGF 139 (319)
T ss_dssp EEEEEECTTHHHHH-HHHHH-------TTCCEEEEEEETTCCCTTCSCCEEH
T ss_pred EEEEeCCcHHHHHH-HHHhc-------cCCcEEEeeccccCCCCCCCCCCCH
Confidence 37899999998765 45543 46788889998899997 34554
No 15
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=29.95 E-value=18 Score=32.30 Aligned_cols=13 Identities=46% Similarity=0.854 Sum_probs=10.9
Q ss_pred EEEEEcCchhHHH
Q 020123 2 RIVVAGGDGTVGW 14 (331)
Q Consensus 2 ~viv~GGDGTl~~ 14 (331)
|+|+|||+||=+.
T Consensus 48 ~~i~~g~~~t~~~ 60 (275)
T 3gw6_A 48 RIIFCGGEGTSST 60 (275)
T ss_dssp EEEEESSSSSSTT
T ss_pred EEEEecCCCCCCC
Confidence 7899999999543
No 16
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=25.70 E-value=17 Score=24.90 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=8.6
Q ss_pred EEEEcCchhH
Q 020123 3 IVVAGGDGTV 12 (331)
Q Consensus 3 viv~GGDGTl 12 (331)
|+|++||||+
T Consensus 41 ViVg~~dgtv 50 (65)
T 2x9a_A 41 IGIGYDNDTS 50 (65)
T ss_dssp EEEEETTTTE
T ss_pred EEEECCCCCE
Confidence 7889999986
Done!