Query 020125
Match_columns 330
No_of_seqs 237 out of 1985
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2920 Predicted methyltransf 100.0 9E-36 1.9E-40 279.7 6.4 211 46-330 67-281 (282)
2 PF10294 Methyltransf_16: Puta 99.9 5E-27 1.1E-31 208.2 12.4 154 69-307 16-172 (173)
3 KOG3201 Uncharacterized conser 99.8 2.6E-21 5.7E-26 168.8 3.6 170 68-329 5-176 (201)
4 COG3897 Predicted methyltransf 99.7 1.7E-17 3.7E-22 149.0 7.1 132 64-292 53-185 (218)
5 KOG2793 Putative N2,N2-dimethy 99.6 4E-14 8.6E-19 132.3 14.4 177 70-328 53-238 (248)
6 PF05175 MTS: Methyltransferas 99.2 7.5E-10 1.6E-14 97.6 17.1 62 73-143 16-78 (170)
7 PF06325 PrmA: Ribosomal prote 99.2 2.5E-10 5.4E-15 109.7 14.6 73 62-143 134-207 (295)
8 PRK15068 tRNA mo(5)U34 methylt 99.2 6.5E-10 1.4E-14 107.9 17.5 152 73-316 104-273 (322)
9 COG2264 PrmA Ribosomal protein 99.2 3.8E-10 8.3E-15 108.3 14.6 65 73-144 145-209 (300)
10 TIGR00537 hemK_rel_arch HemK-r 99.2 1.2E-09 2.5E-14 96.6 16.6 45 95-141 18-62 (179)
11 PF12847 Methyltransf_18: Meth 99.2 4.3E-10 9.4E-15 90.7 12.4 106 96-287 1-111 (112)
12 TIGR00452 methyltransferase, p 99.2 1.5E-09 3.3E-14 105.2 17.2 150 73-316 103-272 (314)
13 PLN02244 tocopherol O-methyltr 99.1 9.9E-09 2.1E-13 100.2 18.4 133 95-314 117-275 (340)
14 PRK00517 prmA ribosomal protei 99.0 1.2E-08 2.6E-13 95.3 16.8 62 73-141 102-163 (250)
15 PLN02396 hexaprenyldihydroxybe 99.0 8.2E-09 1.8E-13 100.4 16.2 130 94-310 129-282 (322)
16 PF13847 Methyltransf_31: Meth 99.0 3.5E-09 7.6E-14 91.0 12.0 108 96-289 3-112 (152)
17 COG2227 UbiG 2-polyprenyl-3-me 99.0 8.2E-10 1.8E-14 102.6 8.6 124 95-307 58-196 (243)
18 PRK14967 putative methyltransf 99.0 1.7E-08 3.7E-13 92.5 16.3 60 76-141 21-80 (223)
19 TIGR00406 prmA ribosomal prote 99.0 2E-08 4.4E-13 95.9 16.5 64 73-143 142-205 (288)
20 KOG1270 Methyltransferases [Co 99.0 1.2E-09 2.6E-14 102.5 6.7 112 94-290 87-198 (282)
21 TIGR00138 gidB 16S rRNA methyl 98.9 1.5E-08 3.3E-13 90.6 13.0 40 95-134 41-81 (181)
22 PRK14968 putative methyltransf 98.9 1.3E-07 2.8E-12 82.9 18.2 53 73-134 8-60 (188)
23 PRK15128 23S rRNA m(5)C1962 me 98.9 3.4E-08 7.3E-13 98.7 15.2 127 95-308 219-356 (396)
24 PRK11873 arsM arsenite S-adeno 98.9 4E-08 8.6E-13 92.3 14.8 134 95-315 76-228 (272)
25 PRK11207 tellurite resistance 98.9 2.8E-08 6E-13 89.7 13.0 40 94-134 28-67 (197)
26 PRK00107 gidB 16S rRNA methylt 98.9 1.5E-07 3.2E-12 84.9 17.5 126 97-320 46-173 (187)
27 PRK05134 bifunctional 3-demeth 98.9 1.1E-07 2.5E-12 86.9 17.1 158 79-328 35-218 (233)
28 smart00828 PKS_MT Methyltransf 98.9 7.1E-08 1.5E-12 87.6 15.3 128 98-312 1-139 (224)
29 PF08241 Methyltransf_11: Meth 98.9 2.3E-08 5.1E-13 77.1 9.8 95 101-285 1-95 (95)
30 PRK08287 cobalt-precorrin-6Y C 98.8 9.1E-08 2E-12 85.1 14.6 120 95-311 30-150 (187)
31 TIGR00477 tehB tellurite resis 98.8 8.5E-08 1.8E-12 86.4 13.7 39 95-134 29-67 (195)
32 PF08003 Methyltransf_9: Prote 98.8 2E-07 4.2E-12 89.7 16.8 155 73-319 97-269 (315)
33 PRK11036 putative S-adenosyl-L 98.8 3.3E-08 7.1E-13 92.3 11.2 105 96-286 44-148 (255)
34 COG2263 Predicted RNA methylas 98.8 4.6E-08 9.9E-13 88.2 10.5 49 93-142 42-90 (198)
35 PRK14966 unknown domain/N5-glu 98.8 3.4E-07 7.4E-12 91.8 17.8 58 77-141 238-296 (423)
36 PF13489 Methyltransf_23: Meth 98.8 2.4E-08 5.3E-13 84.8 8.2 119 94-310 20-156 (161)
37 PRK11783 rlmL 23S rRNA m(2)G24 98.8 6.4E-08 1.4E-12 103.1 12.9 48 95-143 537-584 (702)
38 PRK12335 tellurite resistance 98.8 8.2E-08 1.8E-12 91.5 12.4 39 95-134 119-157 (287)
39 COG4123 Predicted O-methyltran 98.8 1.6E-07 3.4E-12 88.2 13.8 143 70-310 26-187 (248)
40 PLN02336 phosphoethanolamine N 98.8 3.5E-07 7.5E-12 92.7 17.4 129 95-311 265-408 (475)
41 PF13659 Methyltransf_26: Meth 98.8 2.6E-08 5.7E-13 81.0 7.5 38 97-134 1-38 (117)
42 PRK00216 ubiE ubiquinone/menaq 98.7 3.9E-07 8.4E-12 82.6 15.8 105 96-286 51-157 (239)
43 PRK00377 cbiT cobalt-precorrin 98.7 3.7E-07 8.1E-12 82.2 15.4 130 94-317 38-169 (198)
44 PRK10909 rsmD 16S rRNA m(2)G96 98.7 7.5E-08 1.6E-12 87.7 10.9 109 95-290 52-162 (199)
45 PF02353 CMAS: Mycolic acid cy 98.7 1.4E-07 3E-12 89.9 13.1 115 78-286 48-165 (273)
46 PRK15001 SAM-dependent 23S rib 98.7 1.5E-07 3.2E-12 93.5 13.7 46 97-143 229-275 (378)
47 TIGR00536 hemK_fam HemK family 98.7 3.2E-07 6.9E-12 87.4 15.4 60 98-179 116-176 (284)
48 TIGR03534 RF_mod_PrmC protein- 98.7 5.3E-07 1.2E-11 82.8 16.2 57 73-134 69-126 (251)
49 PRK10258 biotin biosynthesis p 98.7 2E-07 4.2E-12 86.5 13.0 99 96-287 42-140 (251)
50 PLN02585 magnesium protoporphy 98.7 6.2E-07 1.3E-11 87.1 16.6 39 95-134 143-181 (315)
51 PRK09328 N5-glutamine S-adenos 98.7 8.8E-07 1.9E-11 82.8 17.0 60 77-141 93-153 (275)
52 PLN02233 ubiquinone biosynthes 98.7 7.4E-07 1.6E-11 84.0 16.5 108 95-286 72-181 (261)
53 PRK01544 bifunctional N5-gluta 98.7 5.2E-07 1.1E-11 92.8 16.7 47 96-143 138-185 (506)
54 TIGR01983 UbiG ubiquinone bios 98.7 3.5E-07 7.5E-12 82.9 13.6 128 73-287 22-149 (224)
55 PTZ00098 phosphoethanolamine N 98.7 3.3E-07 7.2E-12 86.4 13.2 131 94-314 50-199 (263)
56 TIGR02072 BioC biotin biosynth 98.7 4.5E-07 9.8E-12 81.9 13.6 102 95-287 33-135 (240)
57 COG2890 HemK Methylase of poly 98.7 9.8E-07 2.1E-11 84.3 16.1 44 99-143 113-157 (280)
58 TIGR02752 MenG_heptapren 2-hep 98.7 3.1E-07 6.8E-12 83.8 12.2 105 95-286 44-150 (231)
59 TIGR03533 L3_gln_methyl protei 98.6 5.1E-07 1.1E-11 86.2 14.0 47 96-143 121-168 (284)
60 TIGR02469 CbiT precorrin-6Y C5 98.6 1.1E-06 2.4E-11 71.4 14.1 40 95-134 18-58 (124)
61 PRK00121 trmB tRNA (guanine-N( 98.6 2.6E-07 5.7E-12 83.7 11.1 125 96-310 40-174 (202)
62 TIGR00095 RNA methyltransferas 98.6 4.5E-07 9.7E-12 81.7 12.3 49 94-143 47-95 (189)
63 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.9E-06 4.2E-11 84.5 17.4 130 96-315 113-254 (340)
64 PRK01683 trans-aconitate 2-met 98.6 6.5E-07 1.4E-11 83.3 13.4 40 95-134 30-70 (258)
65 KOG1499 Protein arginine N-met 98.6 1.5E-07 3.3E-12 91.6 8.9 51 91-143 55-105 (346)
66 PRK14103 trans-aconitate 2-met 98.6 4.3E-07 9.2E-12 84.7 10.8 97 95-286 28-125 (255)
67 PRK09489 rsmC 16S ribosomal RN 98.6 7E-07 1.5E-11 87.6 12.6 46 97-143 197-243 (342)
68 PRK08317 hypothetical protein; 98.6 2.8E-06 6E-11 76.6 15.3 106 94-287 17-124 (241)
69 TIGR03704 PrmC_rel_meth putati 98.5 3.4E-06 7.5E-11 79.2 16.2 62 77-142 70-132 (251)
70 TIGR02021 BchM-ChlM magnesium 98.5 1.3E-06 2.9E-11 79.4 13.0 40 94-134 53-92 (219)
71 COG2230 Cfa Cyclopropane fatty 98.5 1.5E-06 3.3E-11 83.1 13.2 104 93-286 69-175 (283)
72 PRK11805 N5-glutamine S-adenos 98.5 1E-06 2.2E-11 85.2 11.8 45 98-143 135-180 (307)
73 PRK15451 tRNA cmo(5)U34 methyl 98.5 2.4E-06 5.2E-11 79.6 13.7 39 96-134 56-97 (247)
74 PRK11705 cyclopropane fatty ac 98.5 2.2E-06 4.7E-11 85.4 14.0 40 94-134 165-205 (383)
75 PLN02672 methionine S-methyltr 98.5 3E-06 6.5E-11 93.6 16.1 95 75-179 100-195 (1082)
76 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 4.9E-06 1.1E-10 74.6 14.6 103 96-287 39-143 (223)
77 PF03848 TehB: Tellurite resis 98.5 2.3E-06 5.1E-11 77.6 12.2 40 94-134 28-67 (192)
78 PRK13944 protein-L-isoaspartat 98.4 5.7E-06 1.2E-10 75.1 14.5 40 95-134 71-112 (205)
79 TIGR03587 Pse_Me-ase pseudamin 98.4 2.8E-06 6.1E-11 77.4 12.5 40 95-134 42-82 (204)
80 TIGR00080 pimt protein-L-isoas 98.4 2.5E-06 5.4E-11 77.8 12.1 53 78-134 63-117 (215)
81 PF08242 Methyltransf_12: Meth 98.4 6.3E-08 1.4E-12 76.9 1.0 35 248-283 65-99 (99)
82 cd02440 AdoMet_MTases S-adenos 98.4 3.8E-06 8.1E-11 63.9 10.7 102 99-286 1-103 (107)
83 PF13649 Methyltransf_25: Meth 98.4 6.7E-07 1.5E-11 71.5 6.6 35 100-134 1-39 (101)
84 PRK07580 Mg-protoporphyrin IX 98.4 4.5E-06 9.8E-11 75.8 12.8 40 94-134 61-100 (230)
85 PF05401 NodS: Nodulation prot 98.4 3.7E-06 8.1E-11 76.5 11.6 121 97-308 44-171 (201)
86 PRK11188 rrmJ 23S rRNA methylt 98.4 1.1E-05 2.4E-10 73.8 14.8 36 94-129 49-86 (209)
87 TIGR00740 methyltransferase, p 98.4 9.4E-06 2E-10 74.9 14.5 39 96-134 53-94 (239)
88 TIGR01177 conserved hypothetic 98.4 7.2E-06 1.6E-10 79.7 14.3 52 78-134 168-219 (329)
89 PLN02781 Probable caffeoyl-CoA 98.4 9.1E-06 2E-10 75.6 14.2 138 95-316 67-221 (234)
90 PRK04266 fibrillarin; Provisio 98.4 2.5E-05 5.4E-10 72.5 16.7 64 70-134 46-111 (226)
91 PRK13168 rumA 23S rRNA m(5)U19 98.3 6.2E-06 1.3E-10 83.4 13.0 60 78-143 283-342 (443)
92 COG1092 Predicted SAM-dependen 98.3 4.3E-06 9.4E-11 83.4 11.4 130 94-308 215-353 (393)
93 TIGR02716 C20_methyl_CrtF C-20 98.3 2.8E-05 6.1E-10 74.5 16.3 39 95-134 148-187 (306)
94 COG2813 RsmC 16S RNA G1207 met 98.3 1.3E-05 2.9E-10 77.1 13.5 47 97-144 159-206 (300)
95 PLN03075 nicotianamine synthas 98.3 1.7E-05 3.7E-10 76.5 14.3 115 96-302 123-241 (296)
96 PRK13942 protein-L-isoaspartat 98.3 1.1E-05 2.3E-10 73.8 12.3 55 76-134 60-116 (212)
97 smart00650 rADc Ribosomal RNA 98.3 1.1E-05 2.5E-10 70.6 11.6 39 95-134 12-50 (169)
98 PRK00312 pcm protein-L-isoaspa 98.3 1.8E-05 3.9E-10 71.7 13.3 54 76-134 62-115 (212)
99 TIGR03840 TMPT_Se_Te thiopurin 98.3 9.4E-06 2E-10 74.6 11.2 62 67-134 7-71 (213)
100 PHA03411 putative methyltransf 98.2 1.5E-05 3.3E-10 76.1 12.5 38 97-134 65-103 (279)
101 PRK00811 spermidine synthase; 98.2 1.8E-05 3.9E-10 75.6 13.1 40 96-135 76-116 (283)
102 PF01209 Ubie_methyltran: ubiE 98.2 9.9E-06 2.1E-10 75.4 10.9 105 95-286 46-152 (233)
103 PRK13255 thiopurine S-methyltr 98.2 1E-05 2.2E-10 74.6 10.7 51 78-134 24-74 (218)
104 PLN02336 phosphoethanolamine N 98.2 9.9E-06 2.1E-10 82.1 11.6 104 95-286 36-141 (475)
105 TIGR00091 tRNA (guanine-N(7)-) 98.2 2.6E-05 5.5E-10 70.2 12.7 39 96-134 16-55 (194)
106 PRK03522 rumB 23S rRNA methylu 98.2 1.2E-05 2.7E-10 77.6 11.4 47 95-143 172-218 (315)
107 TIGR02085 meth_trns_rumB 23S r 98.2 8.3E-06 1.8E-10 80.9 10.4 47 95-143 232-278 (374)
108 PRK07402 precorrin-6B methylas 98.2 3.1E-05 6.8E-10 69.4 13.0 46 95-141 39-85 (196)
109 KOG1500 Protein arginine N-met 98.2 6.8E-06 1.5E-10 80.0 9.1 38 92-129 173-210 (517)
110 PRK05785 hypothetical protein; 98.2 1.4E-05 3E-10 73.9 10.9 39 96-134 51-89 (226)
111 KOG1271 Methyltransferases [Ge 98.2 3.5E-05 7.5E-10 69.5 12.6 61 73-134 41-106 (227)
112 COG2226 UbiE Methylase involve 98.2 1.7E-05 3.7E-10 74.2 11.0 104 96-286 51-155 (238)
113 smart00138 MeTrc Methyltransfe 98.2 1.7E-05 3.8E-10 75.0 11.1 42 247-289 201-244 (264)
114 PRK03612 spermidine synthase; 98.2 1.7E-05 3.7E-10 81.9 11.9 40 96-135 297-337 (521)
115 PF05185 PRMT5: PRMT5 arginine 98.1 1.5E-05 3.3E-10 80.9 10.6 58 73-132 165-227 (448)
116 TIGR00479 rumA 23S rRNA (uraci 98.1 5.5E-05 1.2E-09 76.1 14.4 46 96-143 292-337 (431)
117 PF03602 Cons_hypoth95: Conser 98.1 1.3E-05 2.8E-10 72.0 8.7 112 95-289 41-155 (183)
118 PRK14902 16S rRNA methyltransf 98.1 7.4E-05 1.6E-09 75.6 14.9 46 95-141 249-296 (444)
119 PTZ00146 fibrillarin; Provisio 98.1 0.00017 3.6E-09 69.5 16.3 63 71-134 107-172 (293)
120 TIGR00438 rrmJ cell division p 98.1 3.4E-05 7.3E-10 68.7 10.8 38 93-130 29-68 (188)
121 KOG3191 Predicted N6-DNA-methy 98.1 0.0001 2.3E-09 66.4 13.6 75 65-145 17-93 (209)
122 PRK04148 hypothetical protein; 98.0 2.5E-05 5.5E-10 67.1 8.8 49 79-132 3-52 (134)
123 PRK13943 protein-L-isoaspartat 98.0 6.9E-05 1.5E-09 73.1 12.8 40 95-134 79-120 (322)
124 PRK01581 speE spermidine synth 98.0 6.1E-05 1.3E-09 74.6 12.4 41 95-135 149-190 (374)
125 PRK10901 16S rRNA methyltransf 98.0 0.00023 5E-09 71.7 16.8 40 95-134 243-283 (427)
126 PRK06922 hypothetical protein; 98.0 6.3E-05 1.4E-09 79.3 12.1 41 94-134 416-457 (677)
127 PRK11088 rrmA 23S rRNA methylt 97.9 0.00011 2.3E-09 69.5 12.1 39 96-134 85-127 (272)
128 PRK05031 tRNA (uracil-5-)-meth 97.9 0.0001 2.2E-09 72.9 12.1 60 77-143 192-251 (362)
129 TIGR02143 trmA_only tRNA (urac 97.9 9.6E-05 2.1E-09 72.8 11.9 45 97-143 198-242 (353)
130 KOG4300 Predicted methyltransf 97.9 4.3E-05 9.2E-10 70.2 8.5 40 246-286 142-181 (252)
131 PRK14904 16S rRNA methyltransf 97.9 8E-05 1.7E-09 75.4 11.6 59 69-134 230-290 (445)
132 PF01596 Methyltransf_3: O-met 97.9 0.00032 6.9E-09 64.3 14.2 153 75-315 28-192 (205)
133 TIGR00478 tly hemolysin TlyA f 97.9 3.1E-05 6.6E-10 72.1 7.2 56 73-132 56-111 (228)
134 PRK04457 spermidine synthase; 97.9 6.9E-05 1.5E-09 70.9 9.6 39 96-134 66-105 (262)
135 PRK04338 N(2),N(2)-dimethylgua 97.9 6.9E-05 1.5E-09 74.7 10.0 46 97-143 58-104 (382)
136 COG2242 CobL Precorrin-6B meth 97.9 0.00051 1.1E-08 62.1 14.4 48 94-146 32-80 (187)
137 PRK06202 hypothetical protein; 97.9 6.6E-05 1.4E-09 68.9 9.0 39 96-134 60-103 (232)
138 PLN02476 O-methyltransferase 97.9 0.00061 1.3E-08 65.3 15.7 138 95-316 117-266 (278)
139 KOG3420 Predicted RNA methylas 97.9 1.8E-05 4E-10 69.0 4.6 44 93-136 45-88 (185)
140 COG4976 Predicted methyltransf 97.9 1.6E-05 3.5E-10 73.9 4.5 68 246-314 185-262 (287)
141 KOG2497 Predicted methyltransf 97.8 9.5E-06 2.1E-10 76.9 3.0 46 69-118 67-112 (262)
142 PF10672 Methyltrans_SAM: S-ad 97.8 8.6E-05 1.9E-09 71.4 9.2 49 95-144 122-170 (286)
143 PHA03412 putative methyltransf 97.8 0.00031 6.6E-09 65.9 12.5 39 96-134 49-91 (241)
144 TIGR02081 metW methionine bios 97.8 0.00031 6.7E-09 62.8 12.2 39 96-134 13-51 (194)
145 KOG3010 Methyltransferase [Gen 97.8 6.7E-05 1.5E-09 70.2 7.5 39 247-286 98-136 (261)
146 TIGR03438 probable methyltrans 97.8 0.00025 5.3E-09 68.3 11.3 39 96-134 63-103 (301)
147 PRK14901 16S rRNA methyltransf 97.8 0.00034 7.5E-09 70.6 12.7 47 95-142 251-299 (434)
148 TIGR00417 speE spermidine synt 97.8 0.00079 1.7E-08 63.7 14.4 39 96-134 72-111 (270)
149 PLN02366 spermidine synthase 97.7 0.00085 1.8E-08 65.1 14.7 40 96-135 91-131 (308)
150 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00023 5E-09 71.1 10.7 40 95-134 121-161 (390)
151 TIGR00563 rsmB ribosomal RNA s 97.7 0.00077 1.7E-08 67.9 14.4 58 75-141 225-283 (426)
152 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.00018 3.9E-09 71.6 9.2 46 97-143 45-92 (374)
153 PF05219 DREV: DREV methyltran 97.7 0.001 2.2E-08 63.0 13.5 70 247-318 149-240 (265)
154 TIGR00446 nop2p NOL1/NOP2/sun 97.7 0.0003 6.6E-09 66.4 10.1 48 95-143 70-119 (264)
155 PRK14903 16S rRNA methyltransf 97.6 0.00065 1.4E-08 68.8 12.3 46 95-141 236-283 (431)
156 PTZ00338 dimethyladenosine tra 97.6 0.0009 2E-08 64.5 12.1 51 79-134 23-73 (294)
157 PRK00274 ksgA 16S ribosomal RN 97.6 0.00031 6.8E-09 66.6 8.6 65 63-134 15-79 (272)
158 COG0742 N6-adenine-specific me 97.5 0.0017 3.7E-08 58.8 12.6 41 94-134 41-81 (187)
159 COG2518 Pcm Protein-L-isoaspar 97.5 0.0006 1.3E-08 62.7 9.4 57 73-134 53-109 (209)
160 PF02475 Met_10: Met-10+ like- 97.4 0.00059 1.3E-08 62.4 8.3 49 94-143 99-148 (200)
161 KOG2904 Predicted methyltransf 97.4 0.0011 2.4E-08 63.3 10.1 72 73-147 127-199 (328)
162 COG4122 Predicted O-methyltran 97.4 0.0065 1.4E-07 56.4 14.9 135 95-317 58-207 (219)
163 PLN02589 caffeoyl-CoA O-methyl 97.2 0.0091 2E-07 56.3 14.0 138 95-316 78-234 (247)
164 PRK11727 23S rRNA mA1618 methy 97.2 0.001 2.3E-08 64.9 7.9 47 96-143 114-161 (321)
165 KOG2899 Predicted methyltransf 97.2 0.0035 7.6E-08 59.0 10.9 42 93-134 55-97 (288)
166 PRK14896 ksgA 16S ribosomal RN 97.2 0.0019 4.2E-08 60.7 9.1 51 79-134 16-66 (258)
167 PF01135 PCMT: Protein-L-isoas 97.2 0.0026 5.7E-08 58.4 9.6 55 76-134 56-112 (209)
168 PF07021 MetW: Methionine bios 97.1 0.0011 2.3E-08 60.3 6.5 38 95-132 12-49 (193)
169 COG4106 Tam Trans-aconitate me 97.1 0.0012 2.7E-08 61.1 6.9 39 96-134 30-69 (257)
170 PLN02823 spermine synthase 97.1 0.015 3.2E-07 57.2 14.7 40 96-135 103-143 (336)
171 TIGR00755 ksgA dimethyladenosi 96.9 0.0043 9.3E-08 58.0 8.9 40 94-134 27-66 (253)
172 KOG1540 Ubiquinone biosynthesi 96.9 0.02 4.4E-07 54.4 12.8 39 94-132 98-143 (296)
173 PF00891 Methyltransf_2: O-met 96.9 0.015 3.3E-07 53.5 11.9 96 96-288 100-200 (241)
174 COG2521 Predicted archaeal met 96.9 0.0034 7.4E-08 58.9 7.3 40 96-135 134-173 (287)
175 PHA01634 hypothetical protein 96.6 0.0045 9.8E-08 53.1 5.6 52 91-143 23-74 (156)
176 PRK00536 speE spermidine synth 96.5 0.031 6.7E-07 53.2 11.5 39 96-135 72-110 (262)
177 PRK13256 thiopurine S-methyltr 96.5 0.026 5.7E-07 52.5 10.8 52 78-135 30-81 (226)
178 PRK11760 putative 23S rRNA C24 96.5 0.047 1E-06 54.0 12.6 36 93-129 208-243 (357)
179 PF06080 DUF938: Protein of un 96.5 0.068 1.5E-06 49.1 12.8 63 246-309 99-165 (204)
180 PF07942 N2227: N2227-like pro 96.4 0.054 1.2E-06 51.8 12.6 46 95-144 55-100 (270)
181 COG1352 CheR Methylase of chem 96.4 0.036 7.7E-07 53.0 11.2 44 246-290 199-244 (268)
182 COG2519 GCD14 tRNA(1-methylade 96.4 0.13 2.9E-06 48.7 14.6 47 94-141 92-140 (256)
183 PF09243 Rsm22: Mitochondrial 96.3 0.097 2.1E-06 49.9 13.4 62 73-134 10-73 (274)
184 COG2520 Predicted methyltransf 96.2 0.031 6.8E-07 55.1 9.8 50 94-144 186-235 (341)
185 TIGR01444 fkbM_fam methyltrans 96.1 0.011 2.5E-07 49.5 5.6 44 99-143 1-45 (143)
186 PF01861 DUF43: Protein of unk 96.1 0.44 9.5E-06 44.9 16.3 164 67-323 20-184 (243)
187 PF02527 GidB: rRNA small subu 96.0 0.18 3.9E-06 45.5 12.9 36 97-132 49-85 (184)
188 KOG2361 Predicted methyltransf 96.0 0.028 6E-07 53.0 7.8 36 99-134 74-112 (264)
189 PF08123 DOT1: Histone methyla 95.9 0.09 2E-06 48.2 10.8 40 95-134 41-81 (205)
190 COG3963 Phospholipid N-methylt 95.9 0.086 1.9E-06 47.3 10.0 58 73-134 29-88 (194)
191 PRK11783 rlmL 23S rRNA m(2)G24 95.8 0.13 2.9E-06 55.3 13.1 62 78-143 175-279 (702)
192 KOG1541 Predicted protein carb 95.7 0.021 4.7E-07 53.2 5.8 38 96-134 50-87 (270)
193 PF08704 GCD14: tRNA methyltra 95.7 0.61 1.3E-05 44.0 15.6 48 93-145 37-86 (247)
194 PF01564 Spermine_synth: Sperm 95.7 0.4 8.7E-06 45.0 14.3 40 96-135 76-116 (246)
195 COG1189 Predicted rRNA methyla 95.6 0.03 6.4E-07 52.6 6.4 53 74-130 61-113 (245)
196 PF13679 Methyltransf_32: Meth 95.6 0.051 1.1E-06 46.4 7.3 56 79-134 8-68 (141)
197 PRK10611 chemotaxis methyltran 95.1 0.1 2.2E-06 50.3 8.6 43 247-290 221-265 (287)
198 PF09445 Methyltransf_15: RNA 95.1 0.065 1.4E-06 47.6 6.5 60 98-180 1-60 (163)
199 PF01739 CheR: CheR methyltran 95.0 0.066 1.4E-06 48.8 6.6 43 246-289 133-177 (196)
200 PF05148 Methyltransf_8: Hypot 94.9 0.66 1.4E-05 43.0 12.9 60 247-311 120-179 (219)
201 PF01170 UPF0020: Putative RNA 94.9 0.4 8.6E-06 42.7 11.1 52 79-134 15-76 (179)
202 COG2265 TrmA SAM-dependent met 94.8 0.12 2.6E-06 52.5 8.5 60 78-143 279-338 (432)
203 PF05958 tRNA_U5-meth_tr: tRNA 94.6 0.092 2E-06 51.8 6.9 61 76-143 181-241 (352)
204 COG4076 Predicted RNA methylas 94.5 0.026 5.6E-07 51.6 2.5 48 96-145 32-79 (252)
205 KOG1709 Guanidinoacetate methy 94.5 0.21 4.6E-06 46.6 8.5 62 95-180 100-161 (271)
206 COG0421 SpeE Spermidine syntha 94.4 0.43 9.3E-06 46.0 10.8 37 98-134 78-115 (282)
207 COG1041 Predicted DNA modifica 94.4 1.1 2.4E-05 44.4 13.7 58 78-145 183-240 (347)
208 PF00398 RrnaAD: Ribosomal RNA 94.1 0.14 3E-06 48.2 6.6 53 77-134 15-67 (262)
209 PF02384 N6_Mtase: N-6 DNA Met 93.8 0.84 1.8E-05 43.6 11.7 59 78-141 32-98 (311)
210 COG0030 KsgA Dimethyladenosine 93.2 0.25 5.5E-06 47.0 6.8 55 73-134 13-67 (259)
211 PF05724 TPMT: Thiopurine S-me 93.2 0.11 2.5E-06 47.9 4.4 56 73-134 16-74 (218)
212 KOG2940 Predicted methyltransf 93.1 0.073 1.6E-06 50.1 2.9 39 96-134 72-110 (325)
213 COG0293 FtsJ 23S rRNA methylas 93.0 1.3 2.8E-05 40.8 10.8 49 77-129 30-80 (205)
214 KOG3987 Uncharacterized conser 92.8 0.021 4.5E-07 52.9 -1.1 64 247-310 167-253 (288)
215 PF05971 Methyltransf_10: Prot 92.8 0.38 8.1E-06 46.8 7.4 45 97-143 103-149 (299)
216 KOG0820 Ribosomal RNA adenine 92.6 0.44 9.5E-06 45.9 7.3 53 76-134 43-95 (315)
217 COG0220 Predicted S-adenosylme 92.3 0.78 1.7E-05 42.8 8.6 37 98-134 50-87 (227)
218 PF03291 Pox_MCEL: mRNA cappin 92.3 0.25 5.5E-06 48.5 5.6 59 73-135 43-101 (331)
219 COG0500 SmtA SAM-dependent met 92.2 4.1 8.9E-05 31.1 11.5 33 100-133 52-86 (257)
220 COG0357 GidB Predicted S-adeno 92.2 0.15 3.2E-06 47.3 3.6 35 97-131 68-103 (215)
221 PF11968 DUF3321: Putative met 92.2 3.3 7.2E-05 38.5 12.4 65 246-315 101-179 (219)
222 PF04816 DUF633: Family of unk 92.0 0.64 1.4E-05 42.6 7.6 35 100-134 1-36 (205)
223 KOG1501 Arginine N-methyltrans 91.7 0.23 5E-06 50.6 4.6 36 99-134 69-104 (636)
224 PLN02232 ubiquinone biosynthes 91.2 0.86 1.9E-05 39.6 7.2 39 247-286 42-80 (160)
225 KOG1661 Protein-L-isoaspartate 91.0 2.1 4.6E-05 39.9 9.8 47 94-141 80-129 (237)
226 KOG3045 Predicted RNA methylas 90.9 2.9 6.2E-05 40.3 10.8 64 247-315 226-289 (325)
227 KOG2187 tRNA uracil-5-methyltr 90.9 0.28 6.1E-06 50.7 4.4 62 76-143 367-428 (534)
228 PF01728 FtsJ: FtsJ-like methy 90.7 0.53 1.1E-05 41.3 5.5 52 76-130 5-59 (181)
229 KOG2798 Putative trehalase [Ca 90.2 4 8.7E-05 40.2 11.3 162 96-310 150-330 (369)
230 PRK00050 16S rRNA m(4)C1402 me 88.4 1.3 2.7E-05 43.1 6.6 40 95-134 18-59 (296)
231 KOG0024 Sorbitol dehydrogenase 88.3 0.71 1.5E-05 45.4 4.7 40 95-134 168-209 (354)
232 PF02390 Methyltransf_4: Putat 88.2 1.3 2.9E-05 40.0 6.3 37 98-134 19-56 (195)
233 COG4262 Predicted spermidine s 87.4 4.3 9.4E-05 40.9 9.5 41 95-135 287-329 (508)
234 PRK10742 putative methyltransf 87.1 1.5 3.3E-05 41.5 6.2 41 99-141 91-131 (250)
235 PRK11933 yebU rRNA (cytosine-C 87.0 4.9 0.00011 41.5 10.2 40 95-134 112-153 (470)
236 TIGR02987 met_A_Alw26 type II 86.4 1.3 2.7E-05 45.9 5.7 39 96-134 31-78 (524)
237 PRK01544 bifunctional N5-gluta 85.8 2.6 5.7E-05 43.7 7.7 39 96-134 347-386 (506)
238 COG0116 Predicted N6-adenine-s 83.1 31 0.00067 34.8 13.5 99 53-180 155-293 (381)
239 KOG1227 Putative methyltransfe 82.9 1.1 2.3E-05 43.8 3.0 75 71-146 167-244 (351)
240 COG1867 TRM1 N2,N2-dimethylgua 78.7 3.4 7.3E-05 41.4 5.0 46 97-143 53-99 (380)
241 cd00315 Cyt_C5_DNA_methylase C 78.0 4.5 9.8E-05 38.4 5.5 35 99-133 2-36 (275)
242 COG1063 Tdh Threonine dehydrog 76.9 4 8.8E-05 40.0 5.0 40 95-134 167-208 (350)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 76.5 1.5 3.2E-05 41.7 1.8 39 94-132 54-92 (256)
244 KOG1975 mRNA cap methyltransfe 75.9 3.6 7.8E-05 40.7 4.2 40 96-135 117-156 (389)
245 PF02005 TRM: N2,N2-dimethylgu 75.0 4.2 9.1E-05 40.7 4.6 48 97-145 50-99 (377)
246 COG5459 Predicted rRNA methyla 74.1 7 0.00015 39.2 5.7 42 247-288 183-226 (484)
247 COG1568 Predicted methyltransf 72.9 8.9 0.00019 37.3 6.0 61 67-133 128-189 (354)
248 PF03059 NAS: Nicotianamine sy 72.9 46 0.001 32.0 10.9 38 97-134 121-161 (276)
249 COG2384 Predicted SAM-dependen 71.4 10 0.00022 35.5 5.9 47 96-143 16-63 (226)
250 PF01555 N6_N4_Mtase: DNA meth 70.3 12 0.00027 32.9 6.1 52 77-134 177-228 (231)
251 PRK09424 pntA NAD(P) transhydr 69.7 7.3 0.00016 40.7 5.0 40 94-134 162-203 (509)
252 TIGR03439 methyl_EasF probable 68.7 12 0.00026 36.7 6.0 39 96-134 76-119 (319)
253 PF03686 UPF0146: Uncharacteri 68.5 14 0.0003 31.6 5.6 45 78-130 2-47 (127)
254 PF07757 AdoMet_MTase: Predict 68.3 9.9 0.00021 31.8 4.6 49 78-127 40-88 (112)
255 PF12147 Methyltransf_20: Puta 67.2 92 0.002 30.5 11.6 37 96-132 135-174 (311)
256 KOG1269 SAM-dependent methyltr 66.5 26 0.00057 35.0 8.0 39 94-132 108-146 (364)
257 KOG2352 Predicted spermine/spe 66.0 31 0.00067 35.8 8.5 38 98-135 50-87 (482)
258 PF02636 Methyltransf_28: Puta 62.7 17 0.00037 33.8 5.7 53 80-132 2-63 (252)
259 PRK11524 putative methyltransf 62.5 28 0.00061 33.1 7.2 51 78-134 195-245 (284)
260 KOG2730 Methylase [General fun 61.5 11 0.00023 35.7 3.9 83 73-181 74-156 (263)
261 PF05206 TRM13: Methyltransfer 61.4 15 0.00032 35.0 5.0 37 93-129 15-57 (259)
262 PRK13699 putative methylase; P 57.4 42 0.00091 31.0 7.2 51 78-134 150-200 (227)
263 PF04989 CmcI: Cephalosporin h 56.9 26 0.00056 32.4 5.6 86 68-182 9-99 (206)
264 KOG0022 Alcohol dehydrogenase, 56.2 16 0.00035 36.2 4.3 37 96-132 192-230 (375)
265 PRK15001 SAM-dependent 23S rib 56.2 1.7E+02 0.0037 29.4 11.7 63 70-143 24-87 (378)
266 KOG1663 O-methyltransferase [S 54.1 29 0.00063 32.7 5.5 53 78-134 59-113 (237)
267 COG1062 AdhC Zn-dependent alco 51.3 27 0.00059 34.8 5.1 39 95-133 184-224 (366)
268 PF11599 AviRa: RRNA methyltra 51.1 23 0.0005 33.3 4.3 42 98-140 53-97 (246)
269 PF07090 DUF1355: Protein of u 50.5 16 0.00034 32.9 3.1 48 247-295 65-116 (177)
270 cd08237 ribitol-5-phosphate_DH 50.2 25 0.00053 33.9 4.6 39 95-133 162-203 (341)
271 KOG1201 Hydroxysteroid 17-beta 49.2 55 0.0012 32.0 6.7 42 92-134 33-77 (300)
272 PRK09880 L-idonate 5-dehydroge 48.4 30 0.00066 33.1 5.0 39 95-133 168-208 (343)
273 KOG2078 tRNA modification enzy 47.7 8.3 0.00018 39.5 0.9 49 94-144 247-295 (495)
274 cd08283 FDH_like_1 Glutathione 46.2 35 0.00075 33.5 5.1 41 94-134 182-224 (386)
275 cd01491 Ube1_repeat1 Ubiquitin 45.8 22 0.00048 34.3 3.5 47 94-145 16-64 (286)
276 PF07091 FmrO: Ribosomal RNA m 45.8 30 0.00065 32.9 4.3 38 97-134 106-144 (251)
277 PRK08328 hypothetical protein; 45.7 18 0.00039 33.5 2.8 47 93-144 23-71 (231)
278 cd01080 NAD_bind_m-THF_DH_Cycl 45.7 64 0.0014 28.5 6.2 49 73-129 27-78 (168)
279 KOG4058 Uncharacterized conser 45.3 22 0.00049 31.6 3.1 37 98-134 74-110 (199)
280 PF01189 Nol1_Nop2_Fmu: NOL1/N 45.3 1.3E+02 0.0028 28.8 8.6 59 69-134 65-125 (283)
281 PF00145 DNA_methylase: C-5 cy 44.9 48 0.001 31.0 5.7 41 99-144 2-42 (335)
282 PLN02740 Alcohol dehydrogenase 44.4 36 0.00078 33.3 4.8 40 94-133 196-237 (381)
283 cd05191 NAD_bind_amino_acid_DH 43.9 75 0.0016 24.3 5.7 49 79-127 5-55 (86)
284 PF03141 Methyltransf_29: Puta 43.9 36 0.00077 35.5 4.8 48 70-120 91-141 (506)
285 TIGR02356 adenyl_thiF thiazole 41.9 23 0.00049 32.0 2.8 47 93-144 17-65 (202)
286 TIGR03366 HpnZ_proposed putati 41.7 45 0.00098 31.0 4.9 38 95-132 119-158 (280)
287 PF00899 ThiF: ThiF family; I 40.8 29 0.00062 28.9 3.1 33 97-129 2-36 (135)
288 PRK15116 sulfur acceptor prote 40.4 19 0.00042 34.4 2.1 47 93-144 26-74 (268)
289 TIGR02818 adh_III_F_hyde S-(hy 40.0 49 0.0011 32.2 5.0 41 94-134 183-225 (368)
290 TIGR02354 thiF_fam2 thiamine b 39.9 32 0.0007 31.2 3.4 37 93-129 17-55 (200)
291 PF13578 Methyltransf_24: Meth 39.8 22 0.00049 27.9 2.2 30 101-130 1-34 (106)
292 TIGR01381 E1_like_apg7 E1-like 39.7 30 0.00065 37.3 3.6 37 94-130 335-373 (664)
293 PLN02668 indole-3-acetate carb 39.4 19 0.00042 36.3 2.0 34 97-130 64-113 (386)
294 cd05311 NAD_bind_2_malic_enz N 39.4 77 0.0017 29.2 5.9 54 76-130 5-62 (226)
295 TIGR01202 bchC 2-desacetyl-2-h 38.8 45 0.00097 31.6 4.4 38 95-132 143-182 (308)
296 PF01488 Shikimate_DH: Shikima 38.4 68 0.0015 26.8 5.0 39 94-132 9-49 (135)
297 COG1565 Uncharacterized conser 38.1 1.4E+02 0.0031 30.0 7.8 57 77-134 59-124 (370)
298 cd00755 YgdL_like Family of ac 37.4 26 0.00057 32.6 2.5 47 94-145 8-56 (231)
299 COG1064 AdhP Zn-dependent alco 37.2 70 0.0015 31.8 5.5 39 94-134 164-205 (339)
300 cd00401 AdoHcyase S-adenosyl-L 37.1 82 0.0018 32.1 6.2 58 64-132 179-238 (413)
301 TIGR00675 dcm DNA-methyltransf 36.2 63 0.0014 31.3 5.0 34 100-133 1-34 (315)
302 COG2961 ComJ Protein involved 35.9 3.2E+02 0.0069 26.4 9.4 55 256-315 162-223 (279)
303 COG1255 Uncharacterized protei 35.2 76 0.0016 27.0 4.6 44 79-130 3-47 (129)
304 PF10237 N6-adenineMlase: Prob 34.3 3.3E+02 0.0071 24.0 10.8 43 247-290 84-126 (162)
305 PF05891 Methyltransf_PK: AdoM 33.9 59 0.0013 30.3 4.2 39 96-134 55-93 (218)
306 PRK07411 hypothetical protein; 33.9 22 0.00047 35.7 1.4 48 93-145 34-83 (390)
307 TIGR03451 mycoS_dep_FDH mycoth 33.5 73 0.0016 30.7 5.0 39 94-132 174-214 (358)
308 PRK05690 molybdopterin biosynt 33.3 40 0.00086 31.5 3.0 48 93-145 28-77 (245)
309 PRK08223 hypothetical protein; 32.9 31 0.00067 33.4 2.3 49 92-145 22-72 (287)
310 KOG0725 Reductases with broad 32.1 1.3E+02 0.0028 28.5 6.3 41 93-134 4-47 (270)
311 cd08281 liver_ADH_like1 Zinc-d 32.0 76 0.0017 30.8 4.9 40 94-133 189-230 (371)
312 PRK06172 short chain dehydroge 31.0 2.3E+02 0.0051 25.3 7.7 38 94-132 4-44 (253)
313 TIGR00006 S-adenosyl-methyltra 30.7 1.7E+02 0.0036 28.7 6.9 40 95-134 19-59 (305)
314 TIGR02355 moeB molybdopterin s 30.4 56 0.0012 30.4 3.5 46 94-144 21-68 (240)
315 PRK06124 gluconate 5-dehydroge 30.3 2.7E+02 0.0059 24.9 8.0 39 93-132 7-48 (256)
316 PLN02827 Alcohol dehydrogenase 30.2 87 0.0019 30.7 5.0 39 94-132 191-231 (378)
317 COG1889 NOP1 Fibrillarin-like 30.1 1.4E+02 0.003 28.0 5.8 68 67-135 46-116 (231)
318 PF06962 rRNA_methylase: Putat 30.1 3.2E+02 0.0069 23.7 7.8 42 263-309 70-117 (140)
319 cd08238 sorbose_phosphate_red 29.7 87 0.0019 31.0 4.9 40 95-134 174-218 (410)
320 KOG2671 Putative RNA methylase 29.6 42 0.0009 33.7 2.5 79 61-147 180-260 (421)
321 PF02086 MethyltransfD12: D12 29.3 92 0.002 28.4 4.7 51 79-134 7-57 (260)
322 PF00670 AdoHcyase_NAD: S-aden 29.1 1.4E+02 0.003 26.6 5.5 49 78-130 7-57 (162)
323 KOG2017 Molybdopterin synthase 29.0 59 0.0013 32.7 3.5 50 91-145 60-111 (427)
324 PF01269 Fibrillarin: Fibrilla 28.9 2.3E+02 0.005 26.7 7.2 65 70-135 47-114 (229)
325 PRK06153 hypothetical protein; 28.9 60 0.0013 32.9 3.6 45 94-143 173-219 (393)
326 cd01075 NAD_bind_Leu_Phe_Val_D 28.9 2.2E+02 0.0048 25.5 7.1 38 93-133 24-65 (200)
327 cd08239 THR_DH_like L-threonin 28.8 1E+02 0.0022 29.2 5.1 39 94-132 161-201 (339)
328 PRK07878 molybdopterin biosynt 27.9 34 0.00074 34.3 1.7 47 94-145 39-87 (392)
329 cd08300 alcohol_DH_class_III c 27.3 1.1E+02 0.0024 29.6 5.2 37 95-133 185-225 (368)
330 PRK12475 thiamine/molybdopteri 27.2 45 0.00098 32.8 2.4 48 92-144 19-68 (338)
331 TIGR01408 Ube1 ubiquitin-activ 27.1 59 0.0013 36.9 3.5 46 94-145 21-69 (1008)
332 PRK07097 gluconate 5-dehydroge 27.0 3E+02 0.0065 24.9 7.7 39 93-132 6-47 (265)
333 PF11899 DUF3419: Protein of u 26.6 1.7E+02 0.0036 29.5 6.3 52 72-132 19-70 (380)
334 PRK05866 short chain dehydroge 26.5 3.5E+02 0.0076 25.3 8.3 40 93-133 36-78 (293)
335 PRK05786 fabG 3-ketoacyl-(acyl 26.3 3.2E+02 0.007 24.0 7.6 37 95-132 3-42 (238)
336 cd00757 ThiF_MoeB_HesA_family 26.1 75 0.0016 29.1 3.5 48 93-145 17-66 (228)
337 PRK05600 thiamine biosynthesis 26.0 43 0.00094 33.4 2.0 47 93-144 37-85 (370)
338 PRK12548 shikimate 5-dehydroge 25.8 1.4E+02 0.0031 28.4 5.5 35 94-129 123-160 (289)
339 PRK12826 3-ketoacyl-(acyl-carr 25.4 3.6E+02 0.0077 23.7 7.8 36 95-132 4-43 (251)
340 PRK08265 short chain dehydroge 25.1 5.2E+02 0.011 23.4 11.6 38 94-132 3-43 (261)
341 KOG1253 tRNA methyltransferase 25.1 27 0.00059 36.4 0.4 47 96-143 109-157 (525)
342 TIGR00936 ahcY adenosylhomocys 24.8 1.3E+02 0.0028 30.7 5.1 56 64-130 172-229 (406)
343 PRK05597 molybdopterin biosynt 24.4 88 0.0019 30.9 3.8 48 93-145 24-73 (355)
344 PRK08213 gluconate 5-dehydroge 24.4 4E+02 0.0087 23.9 8.0 37 94-132 9-49 (259)
345 cd01487 E1_ThiF_like E1_ThiF_l 24.3 88 0.0019 27.5 3.5 41 99-144 1-43 (174)
346 PRK10309 galactitol-1-phosphat 24.3 1.3E+02 0.0028 28.7 4.9 40 94-133 158-199 (347)
347 PRK08644 thiamine biosynthesis 24.2 84 0.0018 28.7 3.4 46 93-143 24-71 (212)
348 COG3510 CmcI Cephalosporin hyd 24.0 1.5E+02 0.0032 27.7 4.8 59 68-131 46-109 (237)
349 PRK00141 murD UDP-N-acetylmura 23.8 94 0.002 31.7 4.0 36 93-130 11-49 (473)
350 PRK08762 molybdopterin biosynt 23.7 54 0.0012 32.5 2.2 46 94-144 132-179 (376)
351 PRK07688 thiamine/molybdopteri 23.4 63 0.0014 31.8 2.6 47 93-144 20-68 (339)
352 PF05050 Methyltransf_21: Meth 23.4 1.7E+02 0.0036 24.2 4.9 33 102-134 1-38 (167)
353 KOG2915 tRNA(1-methyladenosine 23.2 1.8E+02 0.0038 28.5 5.4 39 93-131 102-142 (314)
354 cd08301 alcohol_DH_plants Plan 23.1 1.4E+02 0.003 28.9 4.9 38 94-133 185-226 (369)
355 PRK08862 short chain dehydroge 22.9 1.9E+02 0.0042 26.0 5.5 39 94-133 2-43 (227)
356 PRK09242 tropinone reductase; 22.6 3E+02 0.0065 24.7 6.8 39 93-132 5-46 (257)
357 PRK08085 gluconate 5-dehydroge 22.6 4.2E+02 0.0092 23.6 7.8 38 94-132 6-46 (254)
358 cd08277 liver_alcohol_DH_like 22.5 1.5E+02 0.0032 28.7 4.9 39 94-132 182-222 (365)
359 PRK14192 bifunctional 5,10-met 22.5 2.7E+02 0.0058 26.7 6.6 37 92-129 154-193 (283)
360 PRK08339 short chain dehydroge 22.4 2.3E+02 0.0051 25.9 6.1 40 93-133 4-46 (263)
361 cd01483 E1_enzyme_family Super 22.2 75 0.0016 26.5 2.5 42 99-145 1-44 (143)
362 PF03949 Malic_M: Malic enzyme 22.0 1.4E+02 0.0031 28.4 4.5 56 76-132 5-72 (255)
363 PF03721 UDPG_MGDP_dh_N: UDP-g 21.9 1.6E+02 0.0034 26.3 4.6 35 99-134 2-38 (185)
364 TIGR03201 dearomat_had 6-hydro 21.9 1.5E+02 0.0032 28.4 4.9 39 94-133 164-204 (349)
365 PRK07478 short chain dehydroge 21.8 4.7E+02 0.01 23.3 7.9 38 94-132 3-43 (254)
366 KOG2651 rRNA adenine N-6-methy 21.3 1.8E+02 0.0039 29.8 5.2 39 94-132 150-189 (476)
367 cd05312 NAD_bind_1_malic_enz N 20.9 2E+02 0.0044 27.7 5.4 55 76-131 5-71 (279)
368 cd01486 Apg7 Apg7 is an E1-lik 20.6 1E+02 0.0022 30.3 3.3 41 99-144 1-43 (307)
369 KOG4589 Cell division protein 20.5 1.6E+02 0.0034 27.4 4.3 37 93-129 66-104 (232)
370 PF02737 3HCDH_N: 3-hydroxyacy 20.2 2.7E+02 0.0059 24.5 5.8 45 99-145 1-47 (180)
371 PRK12749 quinate/shikimate deh 20.1 1.8E+02 0.0039 27.9 4.9 38 93-130 120-159 (288)
372 PRK05854 short chain dehydroge 20.0 3.5E+02 0.0076 25.6 6.9 39 93-132 10-51 (313)
No 1
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=9e-36 Score=279.69 Aligned_cols=211 Identities=41% Similarity=0.607 Sum_probs=169.8
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEE
Q 020125 46 KGKVSVADIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 125 (330)
Q Consensus 46 ~~~~s~~~~~g~~~~dl~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~t 125 (330)
++.++.+++.+.+++|+++++||||+|+|+|+.+|+.++..++ .++..|.||+|||||||+|++||++++.|+..|+++
T Consensus 67 ~~~~~~~~i~~~~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fq 145 (282)
T KOG2920|consen 67 KHLDSIEEIILLNHSDLVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQ 145 (282)
T ss_pred hcccccchhhcccccccCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeE
Confidence 4677888888999999999999999999999999999999886 556789999999999999999999999998999999
Q ss_pred eCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhcccccccccccccccccc
Q 020125 126 DLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEE 205 (330)
Q Consensus 126 D~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~ 205 (330)
|+|.++++..+.||+..|...+. .|.+.+.+..++..+
T Consensus 146 D~na~vl~~~t~pn~~~~~~~~~---------------------------~~~e~~~~~~i~~s~--------------- 183 (282)
T KOG2920|consen 146 DFNAEVLRLVTLPNILVNSHAGV---------------------------EEKENHKVDEILNSL--------------- 183 (282)
T ss_pred ecchhheeeecccceecchhhhh---------------------------hhhhcccceeccccc---------------
Confidence 99999999999999999976431 122222111111100
Q ss_pred ccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEE
Q 020125 206 DFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 285 (330)
Q Consensus 206 d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~l 285 (330)
++ +|-- + .....+||+|++|||||++..++.++...+.+|.+++|++|+
T Consensus 184 -------------------------l~---dg~~-~--~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 184 -------------------------LS---DGVF-N--HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred -------------------------cc---cchh-h--hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 00 1200 0 011249999999999999999999976666678779999999
Q ss_pred EeccccccccccHHHHH-HhhhhcCc---eeEEEEeecCCcceeeeecC
Q 020125 286 ATKKNYVGFNNAARHLR-SLVDEEGI---FGAHLIKEMTDRDIWKFFLK 330 (330)
Q Consensus 286 A~k~~yfGv~gg~~~F~-~~vee~G~---f~~~~~~e~~d~~i~~~~~~ 330 (330)
|+|++|||||||+.+|. +.|.+... -+++++.+..+|+||.+.+|
T Consensus 233 aAK~~yFgVgg~i~~f~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~ 281 (282)
T KOG2920|consen 233 AAKKLYFGVGGGIEEFNSKLMFDEDVFQISEAKLIRETVKRSILTIEFK 281 (282)
T ss_pred hhHhhccCcCcchhhhcccccccCCccccccceehhhcCceeEEEEEec
Confidence 99999999999999994 66666554 35667888889999999876
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.94 E-value=5e-27 Score=208.17 Aligned_cols=154 Identities=29% Similarity=0.410 Sum_probs=97.8
Q ss_pred CCcccchhHHHHHHHHhhhhhc--CCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 69 GFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 69 gg~k~W~ss~~La~~l~~~~~~--~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.|.++|++++.|++||.++... ....+++++|||||||+|++||++++. ++.+|++||+++ ++ +|++.|+.
T Consensus 16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-----~~l~~Ni~ 89 (173)
T PF10294_consen 16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-----ELLRRNIE 89 (173)
T ss_dssp -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-----HHHHHHHH
T ss_pred CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-----HHHHHHHH
Confidence 4788999999999999986321 245789999999999999999999998 788999999999 66 44444544
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125 146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 225 (330)
Q Consensus 146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~ 225 (330)
.|.. ....+|.+..+||++.... +
T Consensus 90 ~N~~---------------~~~~~v~v~~L~Wg~~~~~----------------------~------------------- 113 (173)
T PF10294_consen 90 LNGS---------------LLDGRVSVRPLDWGDELDS----------------------D------------------- 113 (173)
T ss_dssp TT-----------------------EEEE--TTS-HHH----------------------H-------------------
T ss_pred hccc---------------cccccccCcEEEecCcccc----------------------c-------------------
Confidence 3321 0124678888999883100 0
Q ss_pred cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125 226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 305 (330)
Q Consensus 226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v 305 (330)
.....+||+||||||+|+++.+++|+++|+++|. ++|.+|++.++| ....++|++++
T Consensus 114 ------------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R----~~~~~~F~~~~ 170 (173)
T PF10294_consen 114 ------------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRR----RKSEQEFFDRL 170 (173)
T ss_dssp ------------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHHH
T ss_pred ------------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEe----cHHHHHHHHHh
Confidence 0123589999999999999999999999999996 667799999887 34678999998
Q ss_pred hh
Q 020125 306 DE 307 (330)
Q Consensus 306 ee 307 (330)
++
T Consensus 171 ~k 172 (173)
T PF10294_consen 171 KK 172 (173)
T ss_dssp --
T ss_pred hh
Confidence 76
No 3
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2.6e-21 Score=168.80 Aligned_cols=170 Identities=26% Similarity=0.381 Sum_probs=129.9
Q ss_pred CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-CCHHHHHHH-HcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 68 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 68 ~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcG-tGL~gi~a~-~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
+|...+|++..+||.++.+++ ..++|++|||||.| +||.|++.| +...+.|.+||.|.+.+ .||+.-..
T Consensus 5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~ 75 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN 75 (201)
T ss_pred CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence 578899999999999999875 57899999999999 799998865 45668999999999987 45553332
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125 146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 225 (330)
Q Consensus 146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~ 225 (330)
.|. .+. + .+|.+ ..|..
T Consensus 76 ~n~-------~s~-------~-tsc~v--lrw~~---------------------------------------------- 92 (201)
T KOG3201|consen 76 SNM-------ASS-------L-TSCCV--LRWLI---------------------------------------------- 92 (201)
T ss_pred ccc-------ccc-------c-ceehh--hHHHH----------------------------------------------
Confidence 221 011 1 12221 12211
Q ss_pred cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125 226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 305 (330)
Q Consensus 226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v 305 (330)
|+. .......+||+|++|||+|..+.+++|+++|+.+|+ |.|.+++.++|| |.+..+|++.+
T Consensus 93 -----------~~a--qsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~ 154 (201)
T KOG3201|consen 93 -----------WGA--QSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV 154 (201)
T ss_pred -----------hhh--HHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence 110 111245689999999999999999999999999997 888999998887 78999999999
Q ss_pred hhcCceeEEEEeecCCcceeeeec
Q 020125 306 DEEGIFGAHLIKEMTDRDIWKFFL 329 (330)
Q Consensus 306 ee~G~f~~~~~~e~~d~~i~~~~~ 329 (330)
+..| |.+.+ ++..|..||+++.
T Consensus 155 ~~~g-f~v~l-~enyde~iwqrh~ 176 (201)
T KOG3201|consen 155 GTVG-FTVCL-EENYDEAIWQRHG 176 (201)
T ss_pred Hhce-eEEEe-cccHhHHHHHHHH
Confidence 9999 55555 7888999998764
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.70 E-value=1.7e-17 Score=148.97 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=101.0
Q ss_pred CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++.|| .+ .|.+++.||+|+.+++ ..++||+|||+|+|+||++|++++.||+.|+.+|+++..+ .|+.+|
T Consensus 53 pPpfw-a~-~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lN 121 (218)
T COG3897 53 PPPFW-AF-AWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLN 121 (218)
T ss_pred CchHH-HH-HHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcc
Confidence 45676 44 9999999999999986 6899999999999999999999999999999999998764 788888
Q ss_pred HHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 020125 144 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~ 223 (330)
..+|- ..+. |++.|. |
T Consensus 122 a~ang-------------------v~i~------------------------------~~~~d~-----------~---- 137 (218)
T COG3897 122 AAANG-------------------VSIL------------------------------FTHADL-----------I---- 137 (218)
T ss_pred hhhcc-------------------ceeE------------------------------Eeeccc-----------c----
Confidence 76541 0111 111110 1
Q ss_pred cccccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-ccccc
Q 020125 224 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-KKNYV 292 (330)
Q Consensus 224 ~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-k~~yf 292 (330)
-....||+||++|+.|+......|+.++.+|...+ -.+++.. .|.|+
T Consensus 138 ---------------------g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g-~~vlvgdp~R~~l 185 (218)
T COG3897 138 ---------------------GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAG-AAVLVGDPGRAYL 185 (218)
T ss_pred ---------------------CCCcceeEEEeeceecCchHHHHHHHHHHHHHhCC-CEEEEeCCCCCCC
Confidence 13578999999999999999999999888776533 3344443 44454
No 5
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.57 E-value=4e-14 Score=132.34 Aligned_cols=177 Identities=24% Similarity=0.258 Sum_probs=119.0
Q ss_pred CcccchhHHHHHHHHhhhhhc-----CCCCCC--CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 70 FLKCWESSIDLVNVLKHEIRD-----GQLSFR--GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 70 g~k~W~ss~~La~~l~~~~~~-----~~~~~~--~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
.+.+|+++-.++.++.....+ ....|+ .++|||||+|||++|+.+++....+|+.||...-+ .|+..
T Consensus 53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~------~~L~~ 126 (248)
T KOG2793|consen 53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV------ENLKF 126 (248)
T ss_pred eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhH------HHHHH
Confidence 467999999999999876431 111233 55799999999999999998555599999997754 34444
Q ss_pred HHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccC
Q 020125 143 NLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQD 222 (330)
Q Consensus 143 N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~ 222 (330)
|...+.... +++..+|.+..++|++.+... |
T Consensus 127 ~~~~~~~~l------------~~~g~~v~v~~L~Wg~~~~~~-----------------~-------------------- 157 (248)
T KOG2793|consen 127 NRDKNNIAL------------NQLGGSVIVAILVWGNALDVS-----------------F-------------------- 157 (248)
T ss_pred hhhhhhhhh------------hhcCCceeEEEEecCCcccHh-----------------h--------------------
Confidence 433222111 124457888899999964210 0
Q ss_pred CcccccccccCchhhhhhcccccCCCC-ccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHH
Q 020125 223 SSSRRSRKLSGSRAWERASEADQGEGG-YDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 301 (330)
Q Consensus 223 ~~~~~~~~ls~~~~w~~~~~~~~~~~~-fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F 301 (330)
.... +|+|||||++|++++++.|+.+|..+|. .+++++++++.+.= .--..+
T Consensus 158 -----------------------~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~---~~~~~~ 210 (248)
T KOG2793|consen 158 -----------------------RLPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRD---AAWEIE 210 (248)
T ss_pred -----------------------ccCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccc---hHHHHH
Confidence 0112 9999999999999999999999999885 56699999877630 011222
Q ss_pred HHhhhh-cCceeEEEEeecCCcceeeee
Q 020125 302 RSLVDE-EGIFGAHLIKEMTDRDIWKFF 328 (330)
Q Consensus 302 ~~~vee-~G~f~~~~~~e~~d~~i~~~~ 328 (330)
.-+++. .+.|.+......+|++-|..+
T Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 238 (248)
T KOG2793|consen 211 VLLFKKDLKIFDVVQESFFKDQESFRIG 238 (248)
T ss_pred HHHhhhhhccceeeeEeccCcceeeeee
Confidence 222222 355666666666666666544
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.22 E-value=7.5e-10 Score=97.57 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHHhhHHHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+=.++..|++++... ++++|||||||+|.+|+.+++.+.. +|+++|+++.+++. +..|+..|
T Consensus 16 ~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~-a~~n~~~n 78 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL-AKRNAERN 78 (170)
T ss_dssp HHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH-HHHHHHHT
T ss_pred CCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH-HHHHHHhc
Confidence 334677888888754 6789999999999999999987765 79999999999865 34555544
No 7
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.21 E-value=2.5e-10 Score=109.72 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=57.4
Q ss_pred CCCCC-CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHH
Q 020125 62 MISSK-PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNV 140 (330)
Q Consensus 62 l~~~~-y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv 140 (330)
+.||. +-+| .-+......++|.+. ..+|++|||+|||||+++|+|+++||++|+++|+++.+++. ++.|+
T Consensus 134 idPg~AFGTG--~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~ 204 (295)
T PF06325_consen 134 IDPGMAFGTG--HHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENA 204 (295)
T ss_dssp ESTTSSS-SS--HCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHH
T ss_pred ECCCCcccCC--CCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHH
Confidence 34554 3334 568888888888765 46789999999999999999999999999999999998855 45666
Q ss_pred HHH
Q 020125 141 LAN 143 (330)
Q Consensus 141 ~~N 143 (330)
..|
T Consensus 205 ~~N 207 (295)
T PF06325_consen 205 ELN 207 (295)
T ss_dssp HHT
T ss_pred HHc
Confidence 666
No 8
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=6.5e-10 Score=107.93 Aligned_cols=152 Identities=21% Similarity=0.263 Sum_probs=103.7
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
-|.+-+.....+ .++ ..++|++|||+|||+|..++.++..|++.|++.|.++.++.. .|...+..
T Consensus 104 ew~s~~k~~~l~-~~l----~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~------- 168 (322)
T PRK15068 104 EWRSDWKWDRVL-PHL----SPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLL------- 168 (322)
T ss_pred eehHHhHHHHHH-Hhh----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhc-------
Confidence 576655433332 222 246899999999999999999998898889999999987632 22221110
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 232 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls 232 (330)
....+++|..+|.+..+
T Consensus 169 ------------~~~~~i~~~~~d~e~lp--------------------------------------------------- 185 (322)
T PRK15068 169 ------------GNDQRAHLLPLGIEQLP--------------------------------------------------- 185 (322)
T ss_pred ------------CCCCCeEEEeCCHHHCC---------------------------------------------------
Confidence 00124666555432211
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-------------ccccccc-----
Q 020125 233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGF----- 294 (330)
Q Consensus 233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-------------k~~yfGv----- 294 (330)
....||+|++..++|+......+++-+.++|+ |+|.+++.+ ..+|...
T Consensus 186 -------------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~ 251 (322)
T PRK15068 186 -------------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYF 251 (322)
T ss_pred -------------CcCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCcccee
Confidence 13579999999999999999999999999997 889887652 1122221
Q ss_pred cccHHHHHHhhhhcCceeEEEE
Q 020125 295 NNAARHLRSLVDEEGIFGAHLI 316 (330)
Q Consensus 295 ~gg~~~F~~~vee~G~f~~~~~ 316 (330)
-.+...+.+.+++.|+-.++++
T Consensus 252 lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 252 IPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred CCCHHHHHHHHHHcCCceEEEE
Confidence 1367889999999997555554
No 9
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.8e-10 Score=108.29 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=55.3
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
.-+....-.++|.+. ..+|++|||+|||+|+++|++++.||++|+++|+++..++. ++.|+.+|-
T Consensus 145 ~HpTT~lcL~~Le~~------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~ 209 (300)
T COG2264 145 THPTTSLCLEALEKL------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNG 209 (300)
T ss_pred CChhHHHHHHHHHHh------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcC
Confidence 456666667777764 34899999999999999999999999999999999999976 578888884
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=1.2e-09 Score=96.63 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=37.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
.++++|||+|||+|..++.++..+. +|+++|+++++++. +..|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~ 62 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-LRENAK 62 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-HHHHHH
Confidence 4568999999999999999998877 89999999999865 344544
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.18 E-value=4.3e-10 Score=90.71 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
+|.+|||||||+|..++.+++ ....+|++.|+++++++. .+.|.... ....++++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~ 58 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ 58 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence 578999999999999999998 234489999999999865 23333211 1345788888
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|+ ... | ....+||+|+
T Consensus 59 ~d~-~~~-------------------------------------------------------~-------~~~~~~D~v~ 75 (112)
T PF12847_consen 59 GDA-EFD-------------------------------------------------------P-------DFLEPFDLVI 75 (112)
T ss_dssp SCC-HGG-------------------------------------------------------T-------TTSSCEEEEE
T ss_pred Ccc-ccC-------------------------------------------------------c-------ccCCCCCEEE
Confidence 887 210 0 1235699999
Q ss_pred Eec-ccc--C-cccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 255 LTE-IPY--S-VTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 255 asD-~iY--~-~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
... +.. - .+....+++.+.+.|+ |+|+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 999 332 1 1345667888888897 899998864
No 12
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.16 E-value=1.5e-09 Score=105.19 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=102.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
-|.+.+...+++... ..++|++|||+|||+|...+.++..|+..|++.|.++.++... ..++....
T Consensus 103 e~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~------- 168 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD------- 168 (314)
T ss_pred HHHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc-------
Confidence 677666655555432 3578999999999999999888888988999999999887431 11111110
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 232 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls 232 (330)
...++++..++.+..
T Consensus 169 -------------~~~~v~~~~~~ie~l---------------------------------------------------- 183 (314)
T TIGR00452 169 -------------NDKRAILEPLGIEQL---------------------------------------------------- 183 (314)
T ss_pred -------------cCCCeEEEECCHHHC----------------------------------------------------
Confidence 012344333321110
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEec--------------------cccc
Q 020125 233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK--------------------KNYV 292 (330)
Q Consensus 233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k--------------------~~yf 292 (330)
.....||+|++..++|+.......++-++++|+ |+|.+++.+- ..||
T Consensus 184 ------------p~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~f 250 (314)
T TIGR00452 184 ------------HELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYF 250 (314)
T ss_pred ------------CCCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhcccccc
Confidence 112479999999999999998888999999997 8898887521 1122
Q ss_pred cccccHHHHHHhhhhcCceeEEEE
Q 020125 293 GFNNAARHLRSLVDEEGIFGAHLI 316 (330)
Q Consensus 293 Gv~gg~~~F~~~vee~G~f~~~~~ 316 (330)
..+.......+++.||-.++++
T Consensus 251 --lpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 251 --IPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred --CCCHHHHHHHHHHCCCeEEEEE
Confidence 2357788889999998766654
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.06 E-value=9.9e-09 Score=100.25 Aligned_cols=133 Identities=21% Similarity=0.253 Sum_probs=93.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
-++++|||+|||+|..++.++.. |+ +|++.|+++.+++.. ..|.... .+..++.|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~ 173 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ 173 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence 46789999999999999888875 54 899999999988542 2222110 122356666
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|..+.+ ...+.||+|
T Consensus 174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 190 (340)
T PLN02244 174 VADALNQP---------------------------------------------------------------FEDGQFDLV 190 (340)
T ss_pred EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence 66643321 124689999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc-------------------------ccccccccHHHHHHhhhhc
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------------------NYVGFNNAARHLRSLVDEE 308 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~-------------------------~yfGv~gg~~~F~~~vee~ 308 (330)
++.+++.+......+++-+.+.|+ |+|+++++.-. +|+.......++.+++++.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 999999888888888888888996 89998886311 1111112577899999999
Q ss_pred CceeEE
Q 020125 309 GIFGAH 314 (330)
Q Consensus 309 G~f~~~ 314 (330)
|+-.++
T Consensus 270 Gf~~v~ 275 (340)
T PLN02244 270 GLQDIK 275 (340)
T ss_pred CCCeeE
Confidence 974443
No 14
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.03 E-value=1.2e-08 Score=95.28 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=50.0
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
..+.+..+.+.|.+. ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++. ...|+.
T Consensus 102 ~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~-A~~n~~ 163 (250)
T PRK00517 102 THPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA-ARENAE 163 (250)
T ss_pred CCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence 477777777777754 34789999999999999999999998889999999999865 234443
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.03 E-value=8.2e-09 Score=100.41 Aligned_cols=130 Identities=17% Similarity=0.270 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
.+++.+|||+|||+|..++.+++.|+ +|++.|.++++++.. +.+.... ....++.+.
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~-----------------~~~~~i~~~ 185 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMD-----------------PVTSTIEYL 185 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhc-----------------CcccceeEE
Confidence 36788999999999999999988876 899999999998552 1121100 011234443
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.++-++. ....++||+|
T Consensus 186 ~~dae~l---------------------------------------------------------------~~~~~~FD~V 202 (322)
T PLN02396 186 CTTAEKL---------------------------------------------------------------ADEGRKFDAV 202 (322)
T ss_pred ecCHHHh---------------------------------------------------------------hhccCCCCEE
Confidence 3331110 0124689999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccc---------------ccc---------ccHHHHHHhhhhcC
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFN---------NAARHLRSLVDEEG 309 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---------------Gv~---------gg~~~F~~~vee~G 309 (330)
++.+++++....+.+++.+.++|+ |+|.+++.+-.+.+ .+. -...++..++++.|
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999997 89999987532210 011 13577888888888
Q ss_pred c
Q 020125 310 I 310 (330)
Q Consensus 310 ~ 310 (330)
+
T Consensus 282 f 282 (322)
T PLN02396 282 V 282 (322)
T ss_pred C
Confidence 5
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.02 E-value=3.5e-09 Score=90.96 Aligned_cols=108 Identities=24% Similarity=0.381 Sum_probs=80.6
Q ss_pred CCCEEEEEcccCCHHHHHHH-Hc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 96 RGKRVLELSCGYGLPGIFAC-LK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~-~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
++++|||+|||+|..++.++ .. ...+|++.|+++++++.+ +.+.... .+. +++|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~~-ni~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GLD-NIEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TST-TEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------ccc-ccceE
Confidence 57899999999999999988 43 245899999999999653 1122110 122 68888
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|+.+.+. . -..+||+|
T Consensus 60 ~~d~~~l~~-------------------------------------------------------------~-~~~~~D~I 77 (152)
T PF13847_consen 60 QGDIEDLPQ-------------------------------------------------------------E-LEEKFDII 77 (152)
T ss_dssp ESBTTCGCG-------------------------------------------------------------C-SSTTEEEE
T ss_pred Eeehhcccc-------------------------------------------------------------c-cCCCeeEE
Confidence 888655210 0 01689999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 289 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~ 289 (330)
+...++|.......+++-+.++|+ ++|++++....
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999999999999996 88999887655
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.02 E-value=8.2e-10 Score=102.58 Aligned_cols=124 Identities=26% Similarity=0.373 Sum_probs=90.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
+.|++|||+|||-|+++.-+|+.|+ +|++.|.+++.++-.. ..+ .++. + .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak--------~ha-------~e~g-----------v---~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAK--------LHA-------LESG-----------V---N 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHH--------Hhh-------hhcc-----------c---c
Confidence 7899999999999999999999996 8999999998774311 000 0010 0 1
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
.||.... + +|. ....++||+|+
T Consensus 108 i~y~~~~-----~-----------------edl------------------------------------~~~~~~FDvV~ 129 (243)
T COG2227 108 IDYRQAT-----V-----------------EDL------------------------------------ASAGGQFDVVT 129 (243)
T ss_pred ccchhhh-----H-----------------HHH------------------------------------HhcCCCccEEE
Confidence 2222211 0 000 01237999999
Q ss_pred EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccc---------------cccccHHHHHHhhhh
Q 020125 255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAARHLRSLVDE 307 (330)
Q Consensus 255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yf---------------Gv~gg~~~F~~~vee 307 (330)
..|+|-+....+.++..+.++++ |+|++++++-.+++ -+.+|++.+.++++.
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp 196 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKP 196 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCH
Confidence 99999999999999999999886 89999999755542 257789999888875
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=1.7e-08 Score=92.48 Aligned_cols=60 Identities=33% Similarity=0.407 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
.+..|++++... ...++.+|||+|||+|..++.+++.++.+|+++|+++.+++. ...|+.
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~-a~~n~~ 80 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS-ARLNAL 80 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHH
Confidence 445677777643 234678999999999999999988887799999999998865 234443
No 19
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=2e-08 Score=95.89 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..+......++|.+. ..++++|||+|||+|..++.+++.|+++|+++|+++.+++. ++.|+..|
T Consensus 142 ~h~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~-a~~n~~~n 205 (288)
T TIGR00406 142 THPTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES-ARKNAELN 205 (288)
T ss_pred CCHHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence 445555555566543 34789999999999999999999999999999999999865 34555544
No 20
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.95 E-value=1.2e-09 Score=102.52 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
.+.|++|||+|||+||+++-+|+.|| +|+++|..+++++- +|.... ..|+... ....++.+.
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v-------A~~h~~--------~dP~~~~--~~~y~l~~~ 148 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV-------ANEHKK--------MDPVLEG--AIAYRLEYE 148 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH-------HHHhhh--------cCchhcc--ccceeeehh
Confidence 34568999999999999999999997 89999999998854 232210 0111000 011111111
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
..+- | ...++||.|
T Consensus 149 ~~~~----------------------------------------------------------------E--~~~~~fDaV 162 (282)
T KOG1270|consen 149 DTDV----------------------------------------------------------------E--GLTGKFDAV 162 (282)
T ss_pred hcch----------------------------------------------------------------h--hccccccee
Confidence 0000 0 123569999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 290 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~ 290 (330)
+++|++-+....+.+++.+-++|+ |+|..+|++-.+
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 999999999999999999999997 889999997443
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.94 E-value=1.5e-08 Score=90.58 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=34.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
+++++|||+|||+|..++.++..+ ..+|++.|.++.+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~ 81 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF 81 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence 468999999999999999977654 4589999999998865
No 22
>PRK14968 putative methyltransferase; Provisional
Probab=98.92 E-value=1.3e-07 Score=82.91 Aligned_cols=53 Identities=30% Similarity=0.386 Sum_probs=43.2
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
-|+-+..|++++.. .++++|||+|||+|..++.++..+ .+|+++|+++++++.
T Consensus 8 p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~ 60 (188)
T PRK14968 8 PAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVEC 60 (188)
T ss_pred cchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHH
Confidence 45666777776642 468899999999999999988875 589999999999855
No 23
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.90 E-value=3.4e-08 Score=98.65 Aligned_cols=127 Identities=23% Similarity=0.288 Sum_probs=90.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCC-Cceeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 173 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~-~~v~~~ 173 (330)
.+|++|||+|||+|..++.++..|+.+|++.|.++.+++. ...|+..|- +. .++++.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-a~~N~~~Ng---------------------l~~~~v~~i 276 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-ARQNVELNK---------------------LDLSKAEFV 276 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCCcEEEE
Confidence 4689999999999999999888888899999999999976 456666662 21 256777
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|.-+. +. .+ .....+||+|
T Consensus 277 ~~D~~~~---l~--------------------------------------------------~~------~~~~~~fDlV 297 (396)
T PRK15128 277 RDDVFKL---LR--------------------------------------------------TY------RDRGEKFDVI 297 (396)
T ss_pred EccHHHH---HH--------------------------------------------------HH------HhcCCCCCEE
Confidence 7764321 00 00 0123579999
Q ss_pred EEeccccCccc----------HHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125 254 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 308 (330)
Q Consensus 254 LasD~iY~~~~----------~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~ 308 (330)
+ .|-.|.... +..|.....++|+ |+|+++.++-.++. +...|++.+.+.
T Consensus 298 i-lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~a 356 (396)
T PRK15128 298 V-MDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIADA 356 (396)
T ss_pred E-ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHHH
Confidence 8 777776543 4455555566776 89999988766654 468899888753
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=4e-08 Score=92.33 Aligned_cols=134 Identities=23% Similarity=0.333 Sum_probs=90.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-cCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~-~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
-+|.+|||+|||+|..++.+++ .|. .+|+++|.++.+++.. +.|.... .+ .++.|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A-----~~~~~~~-----------------g~-~~v~~ 132 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKA-----RANARKA-----------------GY-TNVEF 132 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHH-----HHHHHHc-----------------CC-CCEEE
Confidence 3688999999999998877664 354 3799999999998652 2333211 01 24556
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..+|+.+.+ ...+.||+
T Consensus 133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~ 149 (272)
T PRK11873 133 RLGEIEALP---------------------------------------------------------------VADNSVDV 149 (272)
T ss_pred EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence 566543321 02358999
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEec---c-----------cccccc---ccHHHHHHhhhhcCceeEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK---K-----------NYVGFN---NAARHLRSLVDEEGIFGAHL 315 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k---~-----------~yfGv~---gg~~~F~~~vee~G~f~~~~ 315 (330)
|+..-+++.....+.+++.+.++|+ |+|++++..- . .+.|.. -...++.+++++.|+-..++
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9998888877777888888888997 8999887521 0 111111 14678999999999755544
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.89 E-value=2.8e-08 Score=89.70 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..++++|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~ 67 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN 67 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 34678999999999999999998876 89999999999854
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.88 E-value=1.5e-07 Score=84.90 Aligned_cols=126 Identities=23% Similarity=0.270 Sum_probs=83.6
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125 97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 175 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g 175 (330)
+.+|||+|||+|..++.++. ....+|++.|.++++++.+ ..|+..|. +. ++++..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-~~~~~~~~---------------------l~-~i~~~~~ 102 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-REVAAELG---------------------LK-NVTVVHG 102 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-HHHHHHcC---------------------CC-CEEEEec
Confidence 88999999999999998775 4456999999999998663 33333321 21 2555544
Q ss_pred ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125 176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 255 (330)
Q Consensus 176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa 255 (330)
|-.+. ...++||+|++
T Consensus 103 d~~~~----------------------------------------------------------------~~~~~fDlV~~ 118 (187)
T PRK00107 103 RAEEF----------------------------------------------------------------GQEEKFDVVTS 118 (187)
T ss_pred cHhhC----------------------------------------------------------------CCCCCccEEEE
Confidence 42110 01358999998
Q ss_pred eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce-eEEEEeecC
Q 020125 256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF-GAHLIKEMT 320 (330)
Q Consensus 256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f-~~~~~~e~~ 320 (330)
... ..++.+++.+.++|+ |+|++++..... ....+....+..|+. ...++.+++
T Consensus 119 ~~~----~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 119 RAV----ASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred ccc----cCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEEEecC
Confidence 642 356778888888896 889988775443 356677777777753 333444444
No 27
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.88 E-value=1.1e-07 Score=86.94 Aligned_cols=158 Identities=21% Similarity=0.270 Sum_probs=100.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS 158 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~ 158 (330)
...+++.... ...++++|||+|||+|..++.+++.++ +|+++|.++.+++. ...|....
T Consensus 35 ~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~----------- 93 (233)
T PRK05134 35 LRLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV-----ARLHALES----------- 93 (233)
T ss_pred HHHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH-----HHHHHHHc-----------
Confidence 3345666553 245789999999999999998888776 79999999998743 23333211
Q ss_pred CCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 020125 159 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE 238 (330)
Q Consensus 159 ~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~ 238 (330)
...+.+..+++....
T Consensus 94 --------~~~~~~~~~~~~~~~--------------------------------------------------------- 108 (233)
T PRK05134 94 --------GLKIDYRQTTAEELA--------------------------------------------------------- 108 (233)
T ss_pred --------CCceEEEecCHHHhh---------------------------------------------------------
Confidence 012233223322110
Q ss_pred hhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc--------------cccc----------
Q 020125 239 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--------------YVGF---------- 294 (330)
Q Consensus 239 ~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~--------------yfGv---------- 294 (330)
....++||+|+++.++........+++.+.+.|+ |+|.++++.-.. .++.
T Consensus 109 -----~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (233)
T PRK05134 109 -----AEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKK 182 (233)
T ss_pred -----hhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhh
Confidence 0123689999999999988888889999999886 889988864210 0100
Q ss_pred cccHHHHHHhhhhcCceeEEEE--eecCCcceeeee
Q 020125 295 NNAARHLRSLVDEEGIFGAHLI--KEMTDRDIWKFF 328 (330)
Q Consensus 295 ~gg~~~F~~~vee~G~f~~~~~--~e~~d~~i~~~~ 328 (330)
--...++.+++++.|+-..+.. .-.+-...|++.
T Consensus 183 ~~~~~~~~~~l~~~Gf~~v~~~~~~~~~~~~~~~~~ 218 (233)
T PRK05134 183 FIKPSELAAWLRQAGLEVQDITGLHYNPLTNRWKLS 218 (233)
T ss_pred cCCHHHHHHHHHHCCCeEeeeeeEEechhhcceeec
Confidence 0134568888999997444432 122336666653
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.87 E-value=7.1e-08 Score=87.64 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=87.4
Q ss_pred CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125 98 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 176 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd 176 (330)
|+|||+|||+|...+.++.. +..+|++.|+++++++. ...|+... .+..++++..+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d 58 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD 58 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence 58999999999988887764 33589999999998744 33333210 123345555444
Q ss_pred cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 020125 177 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 256 (330)
Q Consensus 177 W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILas 256 (330)
.... ...+.||+|++.
T Consensus 59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~ 74 (224)
T smart00828 59 SAKD----------------------------------------------------------------PFPDTYDLVFGF 74 (224)
T ss_pred cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence 3221 012479999999
Q ss_pred ccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc----cc------ccccHHHHHHhhhhcCcee
Q 020125 257 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----VG------FNNAARHLRSLVDEEGIFG 312 (330)
Q Consensus 257 D~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y----fG------v~gg~~~F~~~vee~G~f~ 312 (330)
++++.....+.+++.+.++|+ |+|.+++..-... .+ .-.+..++.+++++.|+-.
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 999988888999999999997 8999888642110 00 0125678889999998633
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.85 E-value=2.3e-08 Score=77.14 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=67.7
Q ss_pred EEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCC
Q 020125 101 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 180 (330)
Q Consensus 101 LELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~ 180 (330)
||+|||+|.....++..+..+|+++|.++++++. .+.+.. ...+.+..+|...+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence 8999999999999988866799999999998743 222211 11233444443332
Q ss_pred cchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecccc
Q 020125 181 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY 260 (330)
Q Consensus 181 ~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY 260 (330)
+ ...+.||+|++..+++
T Consensus 55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH 71 (95)
T ss_dssp S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred c---------------------------------------------------------------ccccccccccccccee
Confidence 1 1357899999999999
Q ss_pred CcccHHHHHHHHHHHcCCCCcEEEE
Q 020125 261 SVTSLKKLYLLIKKCLRPPYGVVYL 285 (330)
Q Consensus 261 ~~~~~~~L~~~i~~~L~~p~Gv~~l 285 (330)
.-+....+++-+.+.|+ |+|++++
T Consensus 72 ~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eccCHHHHHHHHHHHcC-cCeEEeC
Confidence 88889999999999997 8898875
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.84 E-value=9.1e-08 Score=85.12 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=81.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
.++.+|||+|||+|..++.+++.+ ..+|++.|.++.+++.+ ..|+..|. + .++++.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a-~~n~~~~~---------------------~-~~i~~~ 86 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLI-KENRQRFG---------------------C-GNIDII 86 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHhC---------------------C-CCeEEE
Confidence 367899999999999999988754 35899999999988652 33443321 1 134544
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|... ....+||+|
T Consensus 87 ~~d~~~-----------------------------------------------------------------~~~~~~D~v 101 (187)
T PRK08287 87 PGEAPI-----------------------------------------------------------------ELPGKADAI 101 (187)
T ss_pred ecCchh-----------------------------------------------------------------hcCcCCCEE
Confidence 443100 012479999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 311 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f 311 (330)
++.-.. ..+..+++.+.+.|+ |+|++++..-. .+...++.+.+++.|+-
T Consensus 102 ~~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 102 FIGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS 150 (187)
T ss_pred EECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence 986432 346778888888886 88998774321 23567888999998863
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.82 E-value=8.5e-08 Score=86.39 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..+.+|||+|||+|..++.+++.|. +|++.|+++.+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~ 67 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS 67 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 4568999999999999999998876 89999999999855
No 32
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.82 E-value=2e-07 Score=89.72 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=103.4
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
-|.|..--.+ +..++ ..++||+|||+|||.|.-+.-++..||+.|+++|.++..+.. -....++..
T Consensus 97 EWrSd~KW~r-l~p~l----~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg------ 162 (315)
T PF08003_consen 97 EWRSDWKWDR-LLPHL----PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG------ 162 (315)
T ss_pred cccccchHHH-HHhhh----CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC------
Confidence 4666544333 33332 368999999999999999999999999999999998865422 112222110
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 232 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls 232 (330)
....+.+...-.
T Consensus 163 -------------~~~~~~~lplgv------------------------------------------------------- 174 (315)
T PF08003_consen 163 -------------QDPPVFELPLGV------------------------------------------------------- 174 (315)
T ss_pred -------------CCccEEEcCcch-------------------------------------------------------
Confidence 001111110000
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe-------------cccccccc----
Q 020125 233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGFN---- 295 (330)
Q Consensus 233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~-------------k~~yfGv~---- 295 (330)
|.....+.||+|++-=|+|+..+--..++.++.+|+ ++|.+++-+ +.+|-+..
T Consensus 175 ---------E~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 175 ---------EDLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred ---------hhccccCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 001124689999999999999997777788888896 777655432 33443333
Q ss_pred -ccHHHHHHhhhhcCceeEEEEeec
Q 020125 296 -NAARHLRSLVDEEGIFGAHLIKEM 319 (330)
Q Consensus 296 -gg~~~F~~~vee~G~f~~~~~~e~ 319 (330)
.++......++..|+-.++++...
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCc
Confidence 489999999999999888887654
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=3.3e-08 Score=92.31 Aligned_cols=105 Identities=27% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 175 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g 175 (330)
++.+|||+|||+|..++.++..|. +|+++|+++++++.+ +.|.... .+..++++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~ 100 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC 100 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence 567999999999999999998875 899999999998653 2232210 12234555555
Q ss_pred ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125 176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 255 (330)
Q Consensus 176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa 255 (330)
|..+.. ....+.||+|++
T Consensus 101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~ 118 (255)
T PRK11036 101 AAQDIA--------------------------------------------------------------QHLETPVDLILF 118 (255)
T ss_pred CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence 533210 012368999999
Q ss_pred eccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
..+++.......+++.+.+.|+ |+|++.+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence 9999887777888888888996 88988765
No 34
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.6e-08 Score=88.15 Aligned_cols=49 Identities=33% Similarity=0.413 Sum_probs=42.7
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
....|+.|+|||||||.+||.++..||++|++.|+++++++.+ +.|...
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~-r~N~~~ 90 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA-RANAEE 90 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH-HHHHHh
Confidence 4679999999999999999999999999999999999999763 344443
No 35
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.78 E-value=3.4e-07 Score=91.84 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
+..|++.+.+.. -++.+|||+|||+|..++.+++. ...+|+++|+++++++. ...|+.
T Consensus 238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~-AreNa~ 296 (423)
T PRK14966 238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET-ARKNAA 296 (423)
T ss_pred HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHH
Confidence 346666665442 14569999999999999987753 45689999999999965 344544
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.77 E-value=2.4e-08 Score=84.77 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
..++++|||+|||+|.....++..|. +|+++|+++.+++. .+ .. ...+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~------------------~~-~~~~~ 68 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RN------------------VV-FDNFD 68 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TT------------------SE-EEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hh------------------hh-hhhhh
Confidence 45789999999999999988888888 99999999998743 00 00 00000
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.-+ . ....++||+|
T Consensus 69 ~~~-----------------------------------------------------------~-------~~~~~~fD~i 82 (161)
T PF13489_consen 69 AQD-----------------------------------------------------------P-------PFPDGSFDLI 82 (161)
T ss_dssp CHT-----------------------------------------------------------H-------HCHSSSEEEE
T ss_pred hhh-----------------------------------------------------------h-------hccccchhhH
Confidence 000 0 0134699999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccc-----------cccc-------ccHHHHHHhhhhcCc
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN-------NAARHLRSLVDEEGI 310 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~y-----------fGv~-------gg~~~F~~~vee~G~ 310 (330)
++.++++.......+++.|.++|+ |+|.+++.....+ +... =...++.+++++.|+
T Consensus 83 ~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 83 ICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp EEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred hhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 999999999999999999999997 8899998864321 1111 145777777777775
No 37
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.76 E-value=6.4e-08 Score=103.07 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=42.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+|++|||||||+|..++.++..||++|++.|+++.+++. ...|+..|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-a~~N~~~n 584 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-AERNFALN 584 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 4689999999999999999999999899999999999976 45677666
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.76 E-value=8.2e-08 Score=91.48 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=34.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.++++|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~ 157 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN 157 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4567999999999999999998886 89999999999854
No 39
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.76 E-value=1.6e-07 Score=88.25 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=97.4
Q ss_pred CcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhh
Q 020125 70 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQAR 148 (330)
Q Consensus 70 g~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~ 148 (330)
+++.=--++.|+.|.. ....++|||||||+|++|++++.. ...+|++.|+++++.+. ...|+.+|-
T Consensus 26 ~~~~~~DaiLL~~~~~--------~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~-A~~nv~ln~---- 92 (248)
T COG4123 26 GFRYGTDAILLAAFAP--------VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEM-AQRNVALNP---- 92 (248)
T ss_pred ccccccHHHHHHhhcc--------cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHH-HHHHHHhCc----
Confidence 4444456788888874 223889999999999999999876 54699999999999876 457777663
Q ss_pred hhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccc
Q 020125 149 ERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRS 228 (330)
Q Consensus 149 ~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~ 228 (330)
+..++.+...|-.+....
T Consensus 93 -----------------l~~ri~v~~~Di~~~~~~--------------------------------------------- 110 (248)
T COG4123 93 -----------------LEERIQVIEADIKEFLKA--------------------------------------------- 110 (248)
T ss_pred -----------------chhceeEehhhHHHhhhc---------------------------------------------
Confidence 234667666664442210
Q ss_pred ccccCchhhhhhcccccCCCCccEEEEeccccCc------------------ccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125 229 RKLSGSRAWERASEADQGEGGYDVILLTEIPYSV------------------TSLKKLYLLIKKCLRPPYGVVYLATKKN 290 (330)
Q Consensus 229 ~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~------------------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~ 290 (330)
....+||+|++.==-|.. -.++.+++.-.++|+ ++|.+++..+.-
T Consensus 111 ----------------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r~e 173 (248)
T COG4123 111 ----------------LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHRPE 173 (248)
T ss_pred ----------------ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEecHH
Confidence 011245555553222221 236778888888897 889998887664
Q ss_pred cccccccHHHHHHhhhhcCc
Q 020125 291 YVGFNNAARHLRSLVDEEGI 310 (330)
Q Consensus 291 yfGv~gg~~~F~~~vee~G~ 310 (330)
-..+|++++.+.++
T Consensus 174 ------rl~ei~~~l~~~~~ 187 (248)
T COG4123 174 ------RLAEIIELLKSYNL 187 (248)
T ss_pred ------HHHHHHHHHHhcCC
Confidence 36788888888765
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.76 E-value=3.5e-07 Score=92.70 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=90.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
-++.+|||+|||+|..++.++.....+|++.|+++++++.. ..|.. ....++.|..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~-------------------~~~~~v~~~~ 320 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAI-------------------GRKCSVEFEV 320 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhh-------------------cCCCceEEEE
Confidence 35789999999999998887764233899999999988542 22221 0123566666
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|+...+ ...++||+|+
T Consensus 321 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~ 337 (475)
T PLN02336 321 ADCTKKT---------------------------------------------------------------YPDNSFDVIY 337 (475)
T ss_pred cCcccCC---------------------------------------------------------------CCCCCEEEEE
Confidence 6654421 0235899999
Q ss_pred EeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-----------cc---c-ccccHHHHHHhhhhcCce
Q 020125 255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YV---G-FNNAARHLRSLVDEEGIF 311 (330)
Q Consensus 255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------yf---G-v~gg~~~F~~~vee~G~f 311 (330)
+.++++.....+.+++-+.+.|+ |+|.+++..... ++ | .-.....+.+++++.|+-
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~ 408 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFD 408 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCe
Confidence 99999999889999999999997 899988863111 11 1 012467778888888863
No 41
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.76 E-value=2.6e-08 Score=81.00 Aligned_cols=38 Identities=34% Similarity=0.487 Sum_probs=34.8
Q ss_pred CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
|.+|||+|||+|...+.+++.++.++++.|+|+..++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~ 38 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL 38 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH
Confidence 56899999999999999999887799999999999865
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.75 E-value=3.9e-07 Score=82.61 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
++.+|||+|||+|..++.++..+ ..+|+++|+++.+++. .+.|...+ .+...+.+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~ 108 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAV-----GREKLRDL-----------------GLSGNVEFV 108 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHHhhccc-----------------ccccCeEEE
Confidence 67899999999999999888766 3799999999998754 33333210 011234554
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|..+.+ ...+.||+|
T Consensus 109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I 125 (239)
T PRK00216 109 QGDAEALP---------------------------------------------------------------FPDNSFDAV 125 (239)
T ss_pred ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence 44432210 123579999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
+.+-++.+......+++-+.++|+ |+|++++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence 999988888888899999998886 88987764
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.75 E-value=3.7e-07 Score=82.18 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 171 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~ 171 (330)
..++.+|||+|||+|..++.+++. + ..+|++.|.++++++. .+.|+..|- +..++.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~-a~~n~~~~g---------------------~~~~v~ 95 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL-TRRNAEKFG---------------------VLNNIV 95 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------CCCCeE
Confidence 458899999999999999998763 3 3589999999999865 344444331 112455
Q ss_pred eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125 172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 251 (330)
Q Consensus 172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD 251 (330)
+..+|..+. + ....++||
T Consensus 96 ~~~~d~~~~---l-----------------------------------------------------------~~~~~~~D 113 (198)
T PRK00377 96 LIKGEAPEI---L-----------------------------------------------------------FTINEKFD 113 (198)
T ss_pred EEEechhhh---H-----------------------------------------------------------hhcCCCCC
Confidence 555543220 0 00124799
Q ss_pred EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEEEe
Q 020125 252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK 317 (330)
Q Consensus 252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~~~ 317 (330)
.|+..= ....+..+++.+.++|+ |+|++++..-.. +...+-...+++.|+ ..++++
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEEEE
Confidence 988731 22345677777777886 889887644322 246777888888885 655443
No 44
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.75 E-value=7.5e-08 Score=87.70 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=79.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
..+++|||||||+|..|+.++..++.+|++.|.++++++. ...|++.|- + .++.++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-a~~Nl~~~~---------------------~-~~v~~~~ 108 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-LIKNLATLK---------------------A-GNARVVN 108 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHHHhC---------------------C-CcEEEEE
Confidence 4678999999999999997766678899999999999865 345555441 1 1466666
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|+.+. +. .....||+|+
T Consensus 109 ~D~~~~--------------------------------------------------------l~------~~~~~fDlV~ 126 (199)
T PRK10909 109 TNALSF--------------------------------------------------------LA------QPGTPHNVVF 126 (199)
T ss_pred chHHHH--------------------------------------------------------Hh------hcCCCceEEE
Confidence 664220 00 0124699886
Q ss_pred EeccccCcccHHHHHHHHHHH--cCCCCcEEEEEeccc
Q 020125 255 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN 290 (330)
Q Consensus 255 asD~iY~~~~~~~L~~~i~~~--L~~p~Gv~~lA~k~~ 290 (330)
.|-.|.....+.+++.|... | .+++++|+...+.
T Consensus 127 -~DPPy~~g~~~~~l~~l~~~~~l-~~~~iv~ve~~~~ 162 (199)
T PRK10909 127 -VDPPFRKGLLEETINLLEDNGWL-ADEALIYVESEVE 162 (199)
T ss_pred -ECCCCCCChHHHHHHHHHHCCCc-CCCcEEEEEecCC
Confidence 78899998899998888863 5 4899999986553
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.74 E-value=1.4e-07 Score=89.89 Aligned_cols=115 Identities=25% Similarity=0.389 Sum_probs=74.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 156 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~ 156 (330)
....+++.+.. ..-+|.+|||+|||.|-+++.++.. |+ +|++..++++-.+. ++..+..
T Consensus 48 ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~---------- 107 (273)
T PF02353_consen 48 ERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIRE---------- 107 (273)
T ss_dssp HHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHC----------
T ss_pred HHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHh----------
Confidence 44444554442 4568999999999999999999987 87 89999999986643 2222210
Q ss_pred CCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 020125 157 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 236 (330)
Q Consensus 157 s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~ 236 (330)
..+..+|.+...||.+.
T Consensus 108 -------~gl~~~v~v~~~D~~~~-------------------------------------------------------- 124 (273)
T PF02353_consen 108 -------AGLEDRVEVRLQDYRDL-------------------------------------------------------- 124 (273)
T ss_dssp -------STSSSTEEEEES-GGG---------------------------------------------------------
T ss_pred -------cCCCCceEEEEeecccc--------------------------------------------------------
Confidence 02334555555554321
Q ss_pred hhhhcccccCCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 237 WERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 237 w~~~~~~~~~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
..+||-|++-+.+-.. ..++.+++.+.++|+ |+|++++-
T Consensus 125 ----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq 165 (273)
T PF02353_consen 125 ----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQ 165 (273)
T ss_dssp ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEE
T ss_pred ----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEE
Confidence 2399999999999887 789999999999996 89998863
No 46
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.74 E-value=1.5e-07 Score=93.50 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=38.2
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+.+|||||||+|.+|+.+++.+ ..+|+++|.++.+++. ...|+..|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~-A~~N~~~n 275 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-SRLNVETN 275 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 4699999999999999988764 4589999999999976 45666666
No 47
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.73 E-value=3.2e-07 Score=87.37 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=45.1
Q ss_pred CEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125 98 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 176 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd 176 (330)
++|||+|||+|..++.++.... .+|+++|+++++++. ...|+..|. +..+++|..+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~-a~~n~~~~~---------------------~~~~v~~~~~d 173 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV-AEENAEKNQ---------------------LEHRVEFIQSN 173 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEEEECc
Confidence 6999999999999999887543 589999999999865 345554431 22357888888
Q ss_pred cCC
Q 020125 177 WEE 179 (330)
Q Consensus 177 W~~ 179 (330)
|.+
T Consensus 174 ~~~ 176 (284)
T TIGR00536 174 LFE 176 (284)
T ss_pred hhc
Confidence 754
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.73 E-value=5.3e-07 Score=82.83 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=43.6
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
-++.+..+.+.+.+... -.+++|||+|||+|..++.++.. ...+|+++|+++.+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126 (251)
T ss_pred CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 44566677777765531 24579999999999999998875 34589999999999865
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.72 E-value=2e-07 Score=86.52 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 175 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g 175 (330)
.+.+|||+|||+|..+..++..|. +|+++|+++.+++.+ ..|. ..+.+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~ 92 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG 92 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence 568999999999998888777775 899999999988542 1110 01233344
Q ss_pred ccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 020125 176 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 255 (330)
Q Consensus 176 dW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILa 255 (330)
|.+..+ .....||+|++
T Consensus 93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s 109 (251)
T PRK10258 93 DIESLP---------------------------------------------------------------LATATFDLAWS 109 (251)
T ss_pred CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence 433211 12357999999
Q ss_pred eccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 256 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 256 sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
+-++........++.-+.+.|+ |+|++++++
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence 9888777777888888888886 889998874
No 50
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.70 E-value=6.2e-07 Score=87.10 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.++.+|||+|||+|..++.++..|. +|+++|+++.+++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~ 181 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE 181 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4688999999999999999998876 89999999999965
No 51
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=8.8e-07 Score=82.81 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
+..|.+++.... ...++.+|||+|||+|..++.++... ..+|+++|+++.+++. ...|+.
T Consensus 93 te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~-a~~n~~ 153 (275)
T PRK09328 93 TEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV-ARRNAK 153 (275)
T ss_pred cHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHH
Confidence 345666555332 23467899999999999999988654 4689999999999865 234443
No 52
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.70 E-value=7.4e-07 Score=83.99 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=74.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.++.+|||+|||+|...+.++.. +. .+|++.|++++|++... .+. +.... ....++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~-~r~--~~~~~-----------------~~~~~i~~ 131 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA-SRQ--ELKAK-----------------SCYKNIEW 131 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHh--hhhhh-----------------ccCCCeEE
Confidence 46789999999999988877754 32 48999999999996531 111 10000 01124555
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..+|-.+.+ ...+.||+
T Consensus 132 ~~~d~~~lp---------------------------------------------------------------~~~~sfD~ 148 (261)
T PLN02233 132 IEGDATDLP---------------------------------------------------------------FDDCYFDA 148 (261)
T ss_pred EEcccccCC---------------------------------------------------------------CCCCCEeE
Confidence 555533211 12457999
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
|+++.++-+......+++-+.+.|+ |+|.+.+.
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL 181 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence 9999999888888888888888996 88988775
No 53
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=5.2e-07 Score=92.84 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++.+|||+|||+|..++.++. ....+|+++|+++.+++. +..|+..|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~-A~~N~~~~ 185 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV-AKSNAIKY 185 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH-HHHHHHHc
Confidence 456899999999999998765 344589999999999965 34555433
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.69 E-value=3.5e-07 Score=82.91 Aligned_cols=128 Identities=23% Similarity=0.342 Sum_probs=87.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
.|.......+|+.+.........++.+|||+|||+|..+..+++.++ +|+++|.++.+++. .+.|+...
T Consensus 22 ~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-----a~~~~~~~----- 90 (224)
T TIGR01983 22 LHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEV-----AKLHAKKD----- 90 (224)
T ss_pred HHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHH-----HHHHHHHc-----
Confidence 45556666778877664322245789999999999999988888776 69999999998743 33343211
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 232 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls 232 (330)
.. .++++..+|..+..
T Consensus 91 ------------~~-~~~~~~~~d~~~~~--------------------------------------------------- 106 (224)
T TIGR01983 91 ------------PL-LKIEYRCTSVEDLA--------------------------------------------------- 106 (224)
T ss_pred ------------CC-CceEEEeCCHHHhh---------------------------------------------------
Confidence 00 02343333321100
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
....++||+|++..+++.......+++.+.+.|+ ++|++++..
T Consensus 107 -----------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~ 149 (224)
T TIGR01983 107 -----------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST 149 (224)
T ss_pred -----------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 0013689999999999999999999999998886 889888764
No 55
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.67 E-value=3.3e-07 Score=86.44 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
.-++.+|||+|||+|..+..++.....+|++.|+++.+++.. ..+.. ...++.|.
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a-----~~~~~--------------------~~~~i~~~ 104 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIA-----KLRNS--------------------DKNKIEFE 104 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHH-----HHHcC--------------------cCCceEEE
Confidence 346789999999999988877653223899999999988542 11110 01245555
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|..+.+ ...+.||+|
T Consensus 105 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 121 (263)
T PTZ00098 105 ANDILKKD---------------------------------------------------------------FPENTFDMI 121 (263)
T ss_pred ECCcccCC---------------------------------------------------------------CCCCCeEEE
Confidence 54432210 124689999
Q ss_pred EEeccccCcc--cHHHHHHHHHHHcCCCCcEEEEEeccc-----------------cccccccHHHHHHhhhhcCceeEE
Q 020125 254 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN-----------------YVGFNNAARHLRSLVDEEGIFGAH 314 (330)
Q Consensus 254 LasD~iY~~~--~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------------yfGv~gg~~~F~~~vee~G~f~~~ 314 (330)
++.++++... ....+++-+.++|+ |+|++++..-.. .+. ......+.+++++.|+-.++
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYT-LIPIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCC-CCCHHHHHHHHHHCCCCeee
Confidence 9999887643 56778888888896 899988763100 000 12557888888888864333
No 56
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.67 E-value=4.5e-07 Score=81.93 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
.++++|||+|||+|..+..++..+. .+|+++|.++.+++.+ ..+ ..+++.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~----------------------~~~~~~~~ 85 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTK----------------------LSENVQFI 85 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHh----------------------cCCCCeEE
Confidence 5678999999999998888877653 4689999999887431 111 11134444
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|....+ ...++||+|
T Consensus 86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 102 (240)
T TIGR02072 86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI 102 (240)
T ss_pred ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence 44432210 123579999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
+++.++........+++-+.+.|+ |+|.++++.
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999999988888888999999896 899988864
No 57
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=9.8e-07 Score=84.33 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=37.7
Q ss_pred EEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+|||+|||||.+++.+++.+. .+|+++|+|+++++. .+.|...|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~-A~~Na~~~ 157 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL-ARENAERN 157 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH-HHHHHHHc
Confidence 899999999999999987654 499999999999976 46676666
No 58
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.65 E-value=3.1e-07 Score=83.81 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
-++++|||+|||+|..++.++.. + ..+|++.|+++++++.+ ..|+..+ .+ .++.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a-~~~~~~~---------------------~~-~~v~~ 100 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG-RQKVKDA---------------------GL-HNVEL 100 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHhc---------------------CC-CceEE
Confidence 35889999999999998887753 3 35899999999998552 2332211 01 24555
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..+|....+ ...++||+
T Consensus 101 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~ 117 (231)
T TIGR02752 101 VHGNAMELP---------------------------------------------------------------FDDNSFDY 117 (231)
T ss_pred EEechhcCC---------------------------------------------------------------CCCCCccE
Confidence 555432210 12358999
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
|+++.++-..+....+++.+.+.|+ |+|++.+.
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~ 150 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL 150 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 9999887666777778887888886 88988764
No 59
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.65 E-value=5.1e-07 Score=86.24 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=37.3
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+++|||+|||+|..++.++... ..+|+++|+++.+++. ++.|+..|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~-A~~n~~~~ 168 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV-AEINIERH 168 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 35799999999999999988753 3489999999999966 34555544
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.65 E-value=1.1e-06 Score=71.45 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
-++++|||+|||+|..++.++.. +..+|++.|+++.+++.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 58 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL 58 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence 35789999999999999988764 34689999999998855
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.64 E-value=2.6e-07 Score=83.73 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=80.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
.+.+|||+|||+|..++.++.. ...+|++.|+++++++.+ ..|...+ .+ .++++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a-----~~~~~~~-----------------~~-~~v~~~~ 96 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKA-----LKKIEEE-----------------GL-TNLRLLC 96 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHH-----HHHHHHc-----------------CC-CCEEEEe
Confidence 5679999999999999887654 335899999999998653 2333211 11 3467777
Q ss_pred ccc-CCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 175 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 175 gdW-~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
+|+ +..+. ....+.||+|
T Consensus 97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V 115 (202)
T PRK00121 97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI 115 (202)
T ss_pred cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence 775 32110 0123467888
Q ss_pred EEeccc-cCc-------ccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCc
Q 020125 254 LLTEIP-YSV-------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 310 (330)
Q Consensus 254 LasD~i-Y~~-------~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~ 310 (330)
+..-.. |.. ...+.+++-+.+.|+ |+|++++++.... -....++.+++.|+
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~ 174 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGG 174 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCcc
Confidence 764211 111 024678888888896 8999998864432 35677788888885
No 62
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=4.5e-07 Score=81.75 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=42.1
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+.|++||||+||+|..|+.|+..||++|++.|.++.+++. ++.|+..|
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~-~~~N~~~~ 95 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQT-LKENLALL 95 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 36799999999999999999999999999999999999865 34555554
No 63
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.62 E-value=1.9e-06 Score=84.53 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=87.1
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
.+.+|||+|||+|..++.+++ .+..+|+++|.++++++.. +.|.. ..++++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~---------------------~~~i~~i~ 166 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEP---------------------LKECKIIE 166 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhh---------------------ccCCeEEe
Confidence 577999999999998877665 3446899999999988542 11211 01234444
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|..+.+ ...+.||+|+
T Consensus 167 gD~e~lp---------------------------------------------------------------~~~~sFDvVI 183 (340)
T PLN02490 167 GDAEDLP---------------------------------------------------------------FPTDYADRYV 183 (340)
T ss_pred ccHHhCC---------------------------------------------------------------CCCCceeEEE
Confidence 4432210 1235799999
Q ss_pred EeccccCcccHHHHHHHHHHHcCCCCcEEEEEecc-------cccc----ccccHHHHHHhhhhcCceeEEE
Q 020125 255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL 315 (330)
Q Consensus 255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~-------~yfG----v~gg~~~F~~~vee~G~f~~~~ 315 (330)
++.++..-...+.+++-+.+.|+ |+|++++.... +++. ......++.+++++.|+-.+++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 99998877777778888888897 88987765321 1111 0135788899999999755544
No 64
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.62 E-value=6.5e-07 Score=83.27 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
-++.+|||+|||+|.....++.. +..+|+++|+++.+++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~ 70 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAE 70 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 46789999999999998887754 34589999999998854
No 65
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.60 E-value=1.5e-07 Score=91.55 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=42.2
Q ss_pred CCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 91 ~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++..|+||.|||+|||||++++++|++||++|++.|.+.-+ +. ....+..|
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~-a~~iv~~N 105 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DF-ARKIVKDN 105 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HH-HHHHHHhc
Confidence 45689999999999999999999999999999999997744 22 34555555
No 66
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.57 E-value=4.3e-07 Score=84.74 Aligned_cols=97 Identities=21% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
..+.+|||+|||+|.....++... ..+|+++|+++.+++.... ..+++.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------~~~~~~ 77 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------RGVDAR 77 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------------------------------cCCcEE
Confidence 467899999999999998887652 2489999999998854200 012233
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|-.+ | ...++||+|
T Consensus 78 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v 93 (255)
T PRK14103 78 TGDVRD---------------------------------------------------------W-------KPKPDTDVV 93 (255)
T ss_pred EcChhh---------------------------------------------------------C-------CCCCCceEE
Confidence 333110 0 123589999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
++..++......+.+++-+.+.|+ |+|.+++.
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~ 125 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ 125 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence 999999888788888888888896 88988774
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.57 E-value=7e-07 Score=87.64 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=36.5
Q ss_pred CCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..+|||||||+|..++.+++.+. .+|+++|+++.+++. ...|+..|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~-A~~nl~~n 243 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES-SRATLAAN 243 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHHc
Confidence 34799999999999999887643 589999999999966 34455544
No 68
>PRK08317 hypothetical protein; Provisional
Probab=98.55 E-value=2.8e-06 Score=76.57 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 171 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~ 171 (330)
..++.+|||+|||+|..++.++... ..+|+++|.++.+++.+ +.|.. ....+++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~-------------------~~~~~~~ 72 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAA-------------------GLGPNVE 72 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhh-------------------CCCCceE
Confidence 4568899999999999888776542 45899999999987542 22211 0112344
Q ss_pred eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125 172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 251 (330)
Q Consensus 172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD 251 (330)
+..+|....+ ...+.||
T Consensus 73 ~~~~d~~~~~---------------------------------------------------------------~~~~~~D 89 (241)
T PRK08317 73 FVRGDADGLP---------------------------------------------------------------FPDGSFD 89 (241)
T ss_pred EEecccccCC---------------------------------------------------------------CCCCCce
Confidence 4444422210 1236899
Q ss_pred EEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 252 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 252 vILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
+|++..++-.......+++.+.++|+ |+|.+++..
T Consensus 90 ~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 124 (241)
T PRK08317 90 AVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLD 124 (241)
T ss_pred EEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEe
Confidence 99999999888888889999999996 888877653
No 69
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.55 E-value=3.4e-06 Score=79.18 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
+..|++.+..... ....+.+|||+|||+|..++.++.. +..+|+++|+++.+++. ...|+..
T Consensus 70 Te~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~-A~~N~~~ 132 (251)
T TIGR03704 70 TEFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-ARRNLAD 132 (251)
T ss_pred HHHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHHHHH
Confidence 4556665554321 1113458999999999999987753 34589999999999865 3444443
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.54 E-value=1.3e-06 Score=79.43 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..++++|||+|||+|..+..++..++ +|+++|+++++++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM 92 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 45789999999999999999888766 89999999999854
No 71
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=1.5e-06 Score=83.06 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCcee
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 171 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~ 171 (330)
..-+|++|||+|||.|...++||+. |+ +|++++++++.++. ++.-+.. ..+..+++
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~-----------------~gl~~~v~ 125 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAA-----------------RGLEDNVE 125 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHH-----------------cCCCcccE
Confidence 3558999999999999999999976 66 89999999987633 2222211 01223455
Q ss_pred eeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125 172 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 251 (330)
Q Consensus 172 ~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD 251 (330)
+.--||... .++||
T Consensus 126 v~l~d~rd~------------------------------------------------------------------~e~fD 139 (283)
T COG2230 126 VRLQDYRDF------------------------------------------------------------------EEPFD 139 (283)
T ss_pred EEecccccc------------------------------------------------------------------ccccc
Confidence 544455442 13499
Q ss_pred EEEEeccccCccc--HHHHHHHHHHHcCCCCcEEEEE
Q 020125 252 VILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 252 vILasD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
-|++.+.+=.... ++.+++.+.++|+ |+|++++=
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh 175 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLH 175 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEE
Confidence 9999998876655 9999999999996 88987764
No 72
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.50 E-value=1e-06 Score=85.18 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=36.0
Q ss_pred CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++|||+|||+|..++.++... ..+|+++|+++.+++. ...|+..|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~-A~~n~~~~ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV-AEINIERH 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 689999999999999988653 4589999999999965 34555443
No 73
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.50 E-value=2.4e-06 Score=79.64 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCEEEEEcccCCHHHHHHHH---cCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~---~ga~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|||+|...+.+++ ....+|++.|.++.+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~ 97 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER 97 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 678999999999998877665 223489999999999965
No 74
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.49 E-value=2.2e-06 Score=85.35 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
.-+|.+|||+|||+|..++.++.. |+ +|+++|+++++++.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~ 205 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL 205 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 347889999999999999888764 55 89999999998854
No 75
>PLN02672 methionine S-methyltransferase
Probab=98.48 E-value=3e-06 Score=93.61 Aligned_cols=95 Identities=24% Similarity=0.275 Sum_probs=62.6
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhcc
Q 020125 75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 153 (330)
Q Consensus 75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~ 153 (330)
+-+..|++.|...+ ...|++++|||+|||+|.+++.+++.. ..+|+++|+++++++. ...|+.+|.... ....
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~-A~~Na~~n~l~~-~~~~- 173 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV-AWINLYLNALDD-DGLP- 173 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHHcCccc-cccc-
Confidence 56677777764432 124678999999999999999988753 4699999999999976 467777763210 0000
Q ss_pred CCCCCCCCcccCCCCceeeeecccCC
Q 020125 154 QPESSLTPSRQTLAPSVHFYAGDWEE 179 (330)
Q Consensus 154 ~~~s~~~~~~~~l~~~v~~~~gdW~~ 179 (330)
......+.+..+|+|+.+||-+
T Consensus 174 ----~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 174 ----VYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred ----ccccccccccccEEEEECchhh
Confidence 0000001233578999999865
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.47 E-value=4.9e-06 Score=74.61 Aligned_cols=103 Identities=25% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
++++|||+|||+|..+..+++.+. .++++.|.++.+++. ...|.. ...++++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~-----~~~~~~--------------------~~~~i~~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV-----AKKKSE--------------------LPLNIEFI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHH-----HHHHhc--------------------cCCCceEE
Confidence 789999999999999888877655 489999999988743 333321 01234444
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+|..+.+ ...++||+|
T Consensus 94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i 110 (223)
T TIGR01934 94 QADAEALP---------------------------------------------------------------FEDNSFDAV 110 (223)
T ss_pred ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence 44422210 123579999
Q ss_pred EEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe
Q 020125 254 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 287 (330)
Q Consensus 254 LasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~ 287 (330)
+.+..+.+......+++.+.+.|+ |+|++++..
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEE
Confidence 999888777888888888888886 889888753
No 77
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.46 E-value=2.3e-06 Score=77.61 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.++..+|||||||.|.-+++++..|. .|++.|+++..++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 46788999999999999999999998 89999999998854
No 78
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.45 E-value=5.7e-06 Score=75.10 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=32.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~ 134 (330)
-++.+|||+|||+|..+..++.. + ..+|++.|+++++++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~ 112 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY 112 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 46789999999999999777653 2 3489999999998865
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.45 E-value=2.8e-06 Score=77.40 Aligned_cols=40 Identities=10% Similarity=-0.033 Sum_probs=33.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
-++.+|||+|||+|.....++.. +..+|++.|+++++++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 36779999999999998887764 44689999999999865
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.44 E-value=2.5e-06 Score=77.77 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~ 134 (330)
..+...+.+.. ...++.+|||+|||+|..++.++.... .+|++.|+++++++.
T Consensus 63 p~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~ 117 (215)
T TIGR00080 63 PHMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK 117 (215)
T ss_pred HHHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 34444444443 245788999999999999988876532 359999999998854
No 81
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.43 E-value=6.3e-08 Score=76.92 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEE
Q 020125 248 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV 283 (330)
Q Consensus 248 ~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~ 283 (330)
++||+|+++.+++.-+..+.+++.+.++|+ |+|++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 699999999999999999999999999996 88874
No 82
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.41 E-value=3.8e-06 Score=63.92 Aligned_cols=102 Identities=28% Similarity=0.393 Sum_probs=71.4
Q ss_pred EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecccC
Q 020125 99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWE 178 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~ 178 (330)
+|+|+|||+|..+..++.....++++.|.++..++... .+... .....++++.+|+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~------------------~~~~~~~~~~~~~~ 57 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR-----KAAAA------------------LLADNVEVLKGDAE 57 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH-----HHHhc------------------ccccceEEEEcChh
Confidence 48999999999988888766779999999998875421 11110 01123455555443
Q ss_pred CCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecc
Q 020125 179 ELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEI 258 (330)
Q Consensus 179 ~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~ 258 (330)
... + ...++||+|++.-+
T Consensus 58 ~~~-------------------------------------------------------~-------~~~~~~d~i~~~~~ 75 (107)
T cd02440 58 ELP-------------------------------------------------------P-------EADESFDVIISDPP 75 (107)
T ss_pred hhc-------------------------------------------------------c-------ccCCceEEEEEccc
Confidence 311 0 12368999999999
Q ss_pred ccC-cccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 259 PYS-VTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 259 iY~-~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
.+. ......+++.+...|+ ++|.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 988 8888888888888886 88988876
No 83
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.41 E-value=6.7e-07 Score=71.54 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=26.4
Q ss_pred EEEEcccCCHHHHHHHHc---CC-CeEEEEeCChHHHHH
Q 020125 100 VLELSCGYGLPGIFACLK---GA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 100 VLELGcGtGL~gi~a~~~---ga-~~V~~tD~~~~vl~~ 134 (330)
|||+|||+|.....+... +. .++++.|+++++++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~ 39 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL 39 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence 799999999999887765 32 699999999999854
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.41 E-value=4.5e-06 Score=75.79 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~ 100 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE 100 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 34678999999999999999888876 69999999999865
No 85
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.39 E-value=3.7e-06 Score=76.45 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=72.0
Q ss_pred CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeecc
Q 020125 97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 176 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gd 176 (330)
-.++||+|||.|.....++... .+++++|.++..++.. +.+.. . .+.|++..+|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~A------------r~Rl~------------~-~~~V~~~~~d 97 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARA------------RERLA------------G-LPHVEWIQAD 97 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHH------------HHHTT------------T--SSEEEEES-
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHH------------HHhcC------------C-CCCeEEEECc
Confidence 4579999999999998887663 5899999999988542 11110 0 1356554443
Q ss_pred cCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 020125 177 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 256 (330)
Q Consensus 177 W~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvILas 256 (330)
-.+ . ...++||+|+.|
T Consensus 98 vp~--------------------------------------------------------~--------~P~~~FDLIV~S 113 (201)
T PF05401_consen 98 VPE--------------------------------------------------------F--------WPEGRFDLIVLS 113 (201)
T ss_dssp TTT-------------------------------------------------------------------SS-EEEEEEE
T ss_pred CCC--------------------------------------------------------C--------CCCCCeeEEEEe
Confidence 111 0 145799999999
Q ss_pred ccccCcccHHHHHHHHH---HHcCCCCcEEEEEeccc--cc--cccccHHHHHHhhhhc
Q 020125 257 EIPYSVTSLKKLYLLIK---KCLRPPYGVVYLATKKN--YV--GFNNAARHLRSLVDEE 308 (330)
Q Consensus 257 D~iY~~~~~~~L~~~i~---~~L~~p~Gv~~lA~k~~--yf--Gv~gg~~~F~~~vee~ 308 (330)
|+.|.-+..+.|...+. ..|. |+|.+.+++-+- ++ |-.-|...-..++.+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 99999877665554444 5564 999999986432 11 2222566666666654
No 86
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.39 E-value=1.1e-05 Score=73.75 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCCh
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA 129 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~ 129 (330)
..++.+|||||||+|..+..++.. +. .+|++.|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 457889999999999998877664 32 5899999987
No 87
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.38 E-value=9.4e-06 Score=74.90 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=32.7
Q ss_pred CCCEEEEEcccCCHHHHHHHHc---CCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~---ga~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|||+|...+.+++. ...+|++.|+++++++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~ 94 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER 94 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 6779999999999988887763 23589999999999855
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.38 E-value=7.2e-06 Score=79.69 Aligned_cols=52 Identities=29% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..|+..+.+.. ..-+|.+|||.|||+|...+.++..|+ +|++.|+++.+++.
T Consensus 168 ~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~ 219 (329)
T TIGR01177 168 PKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG 219 (329)
T ss_pred HHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence 45666665432 234678999999999999988888776 89999999999865
No 89
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.37 E-value=9.1e-06 Score=75.56 Aligned_cols=138 Identities=13% Similarity=0.194 Sum_probs=85.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.+.++|||+|||+|..++.++. .+..+|+..|++++.++. .+.|+..|. +..++++
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~-A~~n~~~~g---------------------l~~~i~~ 124 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV-GLEFIKKAG---------------------VDHKINF 124 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence 4688999999999997776553 345699999999998864 345554431 2346777
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..||..+. ++.+ . .....++||+
T Consensus 125 ~~gda~~~---L~~l--------------------------------------------~----------~~~~~~~fD~ 147 (234)
T PLN02781 125 IQSDALSA---LDQL--------------------------------------------L----------NNDPKPEFDF 147 (234)
T ss_pred EEccHHHH---HHHH--------------------------------------------H----------hCCCCCCCCE
Confidence 77775441 1000 0 0012468999
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc---------------ccccHHHHHHhhhhcCceeEEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------------FNNAARHLRSLVDEEGIFGAHLI 316 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG---------------v~gg~~~F~~~vee~G~f~~~~~ 316 (330)
|+. |.- ...+..+++.+.++|+ |+|++.+-. ..+.| ...+.++|.+.+.++--+.+.++
T Consensus 148 Vfi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn-~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 148 AFV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDN-TLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred EEE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEc-CCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 876 321 2566677887778886 888766421 11111 11246688888877655555543
No 90
>PRK04266 fibrillarin; Provisional
Probab=98.36 E-value=2.5e-05 Score=72.50 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=44.1
Q ss_pred CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 70 FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 70 g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
++++|... ..++.+|.... +....-+|.+|||+|||+|..++.++.. +..+|++.|.++++++.
T Consensus 46 ~~~~~~~~r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~ 111 (226)
T PRK04266 46 EYREWNPRRSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRE 111 (226)
T ss_pred EEEEECCCccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 45677654 33444444322 0113457889999999999999888764 33589999999999864
No 91
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.33 E-value=6.2e-06 Score=83.38 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..|.+.+.+.. ...++.+|||+|||+|..++.++..+ ++|++.|+++++++.. ..|+..|
T Consensus 283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A-~~n~~~~ 342 (443)
T PRK13168 283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERA-RENARRN 342 (443)
T ss_pred HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHH-HHHHHHc
Confidence 44555555442 23467899999999999999998876 5899999999999663 3444433
No 92
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.32 E-value=4.3e-06 Score=83.43 Aligned_cols=130 Identities=25% Similarity=0.294 Sum_probs=91.2
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeee
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 173 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~ 173 (330)
..+||+||+|=|=||-.|+.|++.||++|+..|.+..+|+. ...|+.+|... ..+++|.
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~-a~~N~~LNg~~--------------------~~~~~~i 273 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEW-ARENAELNGLD--------------------GDRHRFI 273 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHH-HHHHHHhcCCC--------------------ccceeee
Confidence 45699999999999999999999999999999999999976 56788777421 1234444
Q ss_pred ecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 020125 174 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 253 (330)
Q Consensus 174 ~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvI 253 (330)
.+| + |+...+......+||+|
T Consensus 274 ~~D------v-----------------------------------------------------f~~l~~~~~~g~~fDlI 294 (393)
T COG1092 274 VGD------V-----------------------------------------------------FKWLRKAERRGEKFDLI 294 (393)
T ss_pred hhh------H-----------------------------------------------------HHHHHHHHhcCCcccEE
Confidence 443 0 00001111234689999
Q ss_pred EE--------eccccCc-ccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhc
Q 020125 254 LL--------TEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 308 (330)
Q Consensus 254 La--------sD~iY~~-~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~ 308 (330)
|. .+-+++. ..|..|.....++|+ |+|++++++-.+.| +...|+..+.+.
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~----~~~~f~~~i~~a 353 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHF----SSDLFLEIIARA 353 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCcc----CHHHHHHHHHHH
Confidence 97 1222333 446667777777775 89999999877765 578888888763
No 93
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.31 E-value=2.8e-05 Score=74.49 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=31.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
-++.+|||+|||+|..++.+++.. ..++++.|. +.+++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~ 187 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL 187 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH
Confidence 356799999999999999888764 348999998 677754
No 94
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.3e-05 Score=77.08 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=39.5
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
+.+|||||||.|.+|+.+++.. ..+|+++|.|...++. .+.|+..|.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~-ar~Nl~~N~ 206 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES-ARKNLAANG 206 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH-HHHhHHHcC
Confidence 3399999999999999999765 5799999999999977 467777663
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=98.29 E-value=1.7e-05 Score=76.46 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCEEEEEcccC-CHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 96 RGKRVLELSCGY-GLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 96 ~~k~VLELGcGt-GL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
..++|+|+|||. |+.++.++. ....+++..|+++++++.. + .+.... ..+..+++|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-r----~~~~~~----------------~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-R----RLVSSD----------------PDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-H----HHhhhc----------------cCccCCcEE
Confidence 789999999994 566666552 2345899999999988542 1 222100 024456888
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..+|..+.. ...++||+
T Consensus 182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl 198 (296)
T PLN03075 182 HTADVMDVT---------------------------------------------------------------ESLKEYDV 198 (296)
T ss_pred EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence 777643310 01357999
Q ss_pred EEEeccccC-cccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHH
Q 020125 253 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR 302 (330)
Q Consensus 253 ILasD~iY~-~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~ 302 (330)
|+..=++|. ......+++-|.+.|+ |+|++++-.- .|.+.|+
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~-------~G~r~~L 241 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA-------HGARAFL 241 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC-CCcEEEEecc-------cchHhhc
Confidence 999966776 4788899999999996 8999887651 2567775
No 96
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.28 E-value=1.1e-05 Score=73.78 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCChHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~~vl~~ 134 (330)
++..+...+.+.. ..-++.+|||+|||+|..+..++.. +. .+|++.|+++++++.
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~ 116 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK 116 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 3444444454442 2347889999999999999877654 32 489999999999865
No 97
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.27 E-value=1.1e-05 Score=70.65 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=34.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
-.+.+|||+|||+|..+..++..+ .+|++.|+++.+++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~ 50 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPR 50 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHH
Confidence 467799999999999999998874 589999999998854
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.27 E-value=1.8e-05 Score=71.69 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
++..+..++.+.. ..-++.+|||+|||+|..+..++..+ .+|++.|+++++++.
T Consensus 62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~ 115 (212)
T PRK00312 62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWE 115 (212)
T ss_pred CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHH
Confidence 3444445554432 23467899999999999988777665 489999999998754
No 99
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.25 E-value=9.4e-06 Score=74.58 Aligned_cols=62 Identities=19% Similarity=0.036 Sum_probs=46.6
Q ss_pred CCCCcccch---hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 67 PDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 67 y~gg~k~W~---ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
|..+-.-|. -.-.|.+++.... .-++.+||++|||.|.-+++++..|. +|++.|+++.+++.
T Consensus 7 y~~~~~~w~~~~p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 7 WQEGQIGFHQSEVNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ 71 (213)
T ss_pred HhcCCCCCccCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 444444664 3456777765421 12567999999999999999999998 89999999999864
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=98.24 E-value=1.5e-05 Score=76.06 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
+.+|||+|||+|.+++.++... ..+|+++|+++.+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~ 103 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI 103 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4689999999999998887642 4689999999998865
No 101
>PRK00811 spermidine synthase; Provisional
Probab=98.23 E-value=1.8e-05 Score=75.59 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~ 135 (330)
..++||++|||.|.....+++. ++.+|++.|+++++++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence 4689999999999998877775 678999999999999763
No 102
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.23 E-value=9.9e-06 Score=75.45 Aligned_cols=105 Identities=23% Similarity=0.349 Sum_probs=63.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.+|.+|||+|||||-.++.+++. + ..+|++.|+++.||+.. +...... .. .+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a-----~~k~~~~-----------------~~-~~i~~ 102 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA-----RKKLKRE-----------------GL-QNIEF 102 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH-----HHHHHHT-----------------T---SEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH-----HHHHHhh-----------------CC-CCeeE
Confidence 46889999999999999887764 3 24899999999999552 1111110 01 25666
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..+|=++++ ..+..||+
T Consensus 103 v~~da~~lp---------------------------------------------------------------~~d~sfD~ 119 (233)
T PF01209_consen 103 VQGDAEDLP---------------------------------------------------------------FPDNSFDA 119 (233)
T ss_dssp EE-BTTB-----------------------------------------------------------------S-TT-EEE
T ss_pred EEcCHHHhc---------------------------------------------------------------CCCCceeE
Confidence 666533321 13478999
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
|.++=.+-+....+..++-+.+.|+ |+|++.+.
T Consensus 120 v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~il 152 (233)
T PF01209_consen 120 VTCSFGLRNFPDRERALREMYRVLK-PGGRLVIL 152 (233)
T ss_dssp EEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEe
Confidence 9988888777677777777777886 88876654
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.22 E-value=1e-05 Score=74.61 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
-.|++++... ..-++.+||++|||.|.-.++++..|. +|++.|+++..++.
T Consensus 24 ~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 24 PLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred HHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 5566666532 123577999999999999999999988 89999999999865
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.22 E-value=9.9e-06 Score=82.14 Aligned_cols=104 Identities=24% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
.++++|||+|||+|..+..++..+ .+|++.|+++.+++. |...|. ..+++.+..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~ 89 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKK----NESING---------------------HYKNVKFMC 89 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEE
Confidence 467899999999999999988775 589999999998843 222110 113455655
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|...... ......||+|+
T Consensus 90 ~d~~~~~~-------------------------------------------------------------~~~~~~fD~I~ 108 (475)
T PLN02336 90 ADVTSPDL-------------------------------------------------------------NISDGSVDLIF 108 (475)
T ss_pred eccccccc-------------------------------------------------------------CCCCCCEEEEe
Confidence 55432100 01236899999
Q ss_pred EeccccCccc--HHHHHHHHHHHcCCCCcEEEEE
Q 020125 255 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 255 asD~iY~~~~--~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
+.-+++.-.. ...+++-+.+.|+ |+|++++.
T Consensus 109 ~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 9998886543 5678888888886 88988764
No 105
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.20 E-value=2.6e-05 Score=70.16 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=32.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
...+|||+|||+|..++.++.. ...+|++.|+++.+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~ 55 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA 55 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence 4568999999999999887764 34589999999999865
No 106
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.20 E-value=1.2e-05 Score=77.62 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=38.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.++.+|||+|||+|..++.++..+ .+|++.|+++.+++. ...|+..|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~-A~~n~~~~ 218 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC-AKQSAAEL 218 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH-HHHHHHHc
Confidence 467899999999999999999877 599999999999965 34444443
No 107
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.20 E-value=8.3e-06 Score=80.85 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..+++|||||||+|..++.++..+ .+|++.|+++.+++. ...|+..|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~-a~~N~~~~ 278 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC-AQQSAQML 278 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH-HHHHHHHc
Confidence 457899999999999999998776 589999999999966 34555444
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.19 E-value=3.1e-05 Score=69.40 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
-++.+|||+|||+|..++.+++. ...+|++.|.++++++. ...|+.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~-a~~n~~ 85 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL-IRRNCD 85 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence 36789999999999999887754 34689999999999865 244444
No 109
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.19 E-value=6.8e-06 Score=80.01 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125 92 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 129 (330)
Q Consensus 92 ~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~ 129 (330)
..+|+||.|||+|||+|+++++|+.+||++|.+.+-+.
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~ 210 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE 210 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH
Confidence 45899999999999999999999999999999998765
No 110
>PRK05785 hypothetical protein; Provisional
Probab=98.19 E-value=1.4e-05 Score=73.86 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|||||.....++.....+|++.|.+++|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 377999999999999888776633489999999999854
No 111
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.17 E-value=3.5e-05 Score=69.55 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=45.0
Q ss_pred cc---hhHHHHHHHHhhhhhcCCCCCCCC-EEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHH
Q 020125 73 CW---ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W---~ss~~La~~l~~~~~~~~~~~~~k-~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~ 134 (330)
+| ++-..+.+||.+++...+ .-+.. +|||||||-|..-.-++..|.. ..+++||++.++++
T Consensus 41 vWFg~~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 41 VWFGEDAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred eecCCcHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 66 344778889988764111 12333 9999999999888778877654 49999999999865
No 112
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.16 E-value=1.7e-05 Score=74.24 Aligned_cols=104 Identities=25% Similarity=0.402 Sum_probs=76.5
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
+|.+|||+|||||-..+..++ .|..+|++.|+++.||+.. -. +.. .. .... |.|..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a--------~~----k~~-----~~-----~~~~-i~fv~ 107 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA--------RE----KLK-----KK-----GVQN-VEFVV 107 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH--------HH----Hhh-----cc-----Cccc-eEEEE
Confidence 799999999999999988775 4567999999999998431 11 100 00 1112 66666
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
+|=++++ -.+..||++.
T Consensus 108 ~dAe~LP---------------------------------------------------------------f~D~sFD~vt 124 (238)
T COG2226 108 GDAENLP---------------------------------------------------------------FPDNSFDAVT 124 (238)
T ss_pred echhhCC---------------------------------------------------------------CCCCccCEEE
Confidence 6644432 1357899999
Q ss_pred EeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 255 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 255 asD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
.+=.+=+....+..++-+.+.|+ |+|++++.
T Consensus 125 ~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL 155 (238)
T ss_pred eeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence 99999999999998888999997 88987765
No 113
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.15 E-value=1.7e-05 Score=74.96 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125 247 EGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKK 289 (330)
Q Consensus 247 ~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~ 289 (330)
.++||+|++..++..- .....+++-+.++|+ |+|.++++..-
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~E 244 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHSE 244 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECcc
Confidence 5689999998876433 345678888888996 99999987543
No 114
>PRK03612 spermidine synthase; Provisional
Probab=98.15 E-value=1.7e-05 Score=81.95 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~~ 135 (330)
+.++||++|||+|.....+++.+. ++|++.|+|+++++.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a 337 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA 337 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence 568999999999998888777654 7999999999999763
No 115
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.12 E-value=1.5e-05 Score=80.92 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-----CCeEEEEeCChHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI 132 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-----a~~V~~tD~~~~vl 132 (330)
..+.+ +.+.|.+.........+++.||++|||+|.++.++++++ +.+|++.+.|+.+.
T Consensus 165 ~Ye~A--I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 165 QYERA--IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp HHHHH--HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred HHHHH--HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 34444 355566555433334478999999999999999988776 68999999999766
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.12 E-value=5.5e-05 Score=76.07 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=37.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++.+|||+|||+|..++.++.. +++|++.|+++.+++. ...|+..|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~-a~~n~~~~ 337 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEK-AQQNAELN 337 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHH-HHHHHHHh
Confidence 4689999999999999998876 4589999999999865 34555544
No 117
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.11 E-value=1.3e-05 Score=72.04 Aligned_cols=112 Identities=26% Similarity=0.392 Sum_probs=72.3
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
+.|.+||||=||||..|+-|...||++|++.|.++..+ ..++.|+.... +..+++++.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~l~-----------------~~~~~~v~~ 98 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEKLG-----------------LEDKIRVIK 98 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHHHT------------------GGGEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHHhC-----------------CCcceeeec
Confidence 68999999999999999999999999999999999987 45666765321 112344444
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
.|... ++.+. .....+||+|.
T Consensus 99 ~d~~~--------------------------------------------------------~l~~~---~~~~~~fDiIf 119 (183)
T PF03602_consen 99 GDAFK--------------------------------------------------------FLLKL---AKKGEKFDIIF 119 (183)
T ss_dssp SSHHH--------------------------------------------------------HHHHH---HHCTS-EEEEE
T ss_pred cCHHH--------------------------------------------------------HHHhh---cccCCCceEEE
Confidence 33111 01000 01357899885
Q ss_pred EeccccCcccH-HHHHHHHH--HHcCCCCcEEEEEecc
Q 020125 255 LTEIPYSVTSL-KKLYLLIK--KCLRPPYGVVYLATKK 289 (330)
Q Consensus 255 asD~iY~~~~~-~~L~~~i~--~~L~~p~Gv~~lA~k~ 289 (330)
.|=.|..... +.+++.|. .+|. ++|++++-+.+
T Consensus 120 -lDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 -LDPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSK 155 (183)
T ss_dssp -E--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEET
T ss_pred -ECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecC
Confidence 6899999884 88888877 3564 78988887644
No 118
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.10 E-value=7.4e-05 Score=75.56 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
-+|.+|||+|||+|..++.++.. +..+|++.|+++..++. +..|+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~-~~~n~~ 296 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL-IEENAK 296 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHH
Confidence 36789999999999999887764 34689999999999855 234443
No 119
>PTZ00146 fibrillarin; Provisional
Probab=98.08 E-value=0.00017 Score=69.53 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=44.4
Q ss_pred cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125 71 LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 71 ~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~ 134 (330)
+++|+-- =-||..|..-+.. ....++.+|||||||+|.....++.. | ...|++.|+++.+++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d 172 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD 172 (293)
T ss_pred eeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence 7899865 2345445433211 23467889999999999988888764 3 3589999999887644
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.08 E-value=3.4e-05 Score=68.74 Aligned_cols=38 Identities=32% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE 130 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~ 130 (330)
..-+|++|||+|||+|..+..++.. +..+|++.|+++.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 3457899999999999988877654 3458999999984
No 121
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.0001 Score=66.38 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=53.9
Q ss_pred CCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 65 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 65 ~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
.+||=+ |-++.|.+.|+.....-. .-.-+.++|+|||+|.++-++++. +.....+||+|+.+++. |+.....
T Consensus 17 dVYEPa----EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~ 90 (209)
T KOG3191|consen 17 DVYEPA----EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARC 90 (209)
T ss_pred hccCcc----chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHh
Confidence 456633 567788888876643111 112578999999999999887652 34578999999999976 7788887
Q ss_pred HHH
Q 020125 143 NLE 145 (330)
Q Consensus 143 N~~ 145 (330)
|-.
T Consensus 91 n~~ 93 (209)
T KOG3191|consen 91 NRV 93 (209)
T ss_pred cCC
Confidence 754
No 122
>PRK04148 hypothetical protein; Provisional
Probab=98.04 E-value=2.5e-05 Score=67.06 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCeEEEEeCChHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
.+++||.++. ...++++|||+|||+|. ++..++..|. .|+++|+++..+
T Consensus 3 ~i~~~l~~~~----~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV 52 (134)
T PRK04148 3 TIAEFIAENY----EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV 52 (134)
T ss_pred HHHHHHHHhc----ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 5788888765 23467899999999997 8888888886 999999999976
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.03 E-value=6.9e-05 Score=73.13 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~ 134 (330)
-++.+|||+|||+|..++.+++... .+|++.|.++++++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~ 120 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 120 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 4678999999999999988776432 369999999999865
No 124
>PRK01581 speE spermidine synthase; Validated
Probab=98.03 E-value=6.1e-05 Score=74.61 Aligned_cols=41 Identities=29% Similarity=0.200 Sum_probs=33.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~ 135 (330)
-..++||++|||+|.....+.+. +..+|++.|++++|++.+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA 190 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA 190 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Confidence 35679999999999876666664 457999999999998653
No 125
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.02 E-value=0.00023 Score=71.71 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=34.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~ 134 (330)
.+|.+|||+|||+|..++.++..+. .+|++.|.++.+++.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~ 283 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER 283 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4688999999999999988876543 589999999999855
No 126
>PRK06922 hypothetical protein; Provisional
Probab=97.98 E-value=6.3e-05 Score=79.28 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
.+++.+|||+|||+|..+..++. ....+|+++|+++.+++.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 45788999999999998766654 334599999999999855
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.95 E-value=0.00011 Score=69.48 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC----CCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g----a~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|||+|.....++... ..+|++.|+++.+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 45789999999999887765431 2379999999999854
No 128
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.93 E-value=0.0001 Score=72.87 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
...|.+++.+... ..+.+||||+||+|..|+.+++. +++|++.|.++.+++. .+.|+..|
T Consensus 192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-a~~N~~~~ 251 (362)
T PRK05031 192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-AQYNIAAN 251 (362)
T ss_pred HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-HHHHHHHh
Confidence 3455555554321 12357999999999999977764 6799999999999966 35566555
No 129
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.93 E-value=9.6e-05 Score=72.82 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=36.0
Q ss_pred CCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+++||||+||+|..|+.++.. +++|++.|.++++++. ...|+..|
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~-a~~n~~~~ 242 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNA-AQYNIAAN 242 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHH-HHHHHHHc
Confidence 457999999999999977765 5699999999999966 34555544
No 130
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=4.3e-05 Score=70.20 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.0
Q ss_pred CCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 246 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 246 ~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
.++.||+|+.+=++.+.+.....++-++++|+ |+|++++-
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 46799999999999999999999999999997 88988765
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=8e-05 Score=75.40 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=42.4
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125 69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~ 134 (330)
|-+.+++.+-.++-.+.. ..+|++|||+|||+|..++.++.. +..+|++.|.++.+++.
T Consensus 230 G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~ 290 (445)
T PRK14904 230 GLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK 290 (445)
T ss_pred cEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence 335677655444444432 347899999999999888776642 34589999999999865
No 132
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.91 E-value=0.00032 Score=64.27 Aligned_cols=153 Identities=21% Similarity=0.289 Sum_probs=94.0
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
..+..-+++|.... ...+-++|||+|+++|..++.++.. ...+|+..|.+++..+. .++|+...
T Consensus 28 ~i~~~~g~lL~~l~----~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~-A~~~~~~a--------- 93 (205)
T PF01596_consen 28 SISPETGQLLQMLV----RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI-ARENFRKA--------- 93 (205)
T ss_dssp SHHHHHHHHHHHHH----HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH-HHHHHHHT---------
T ss_pred ccCHHHHHHHHHHH----HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH-HHHHHHhc---------
Confidence 34455555555433 2347889999999999999998863 12489999999998754 23444322
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 232 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls 232 (330)
.+..+|++..||..+. ++.+.
T Consensus 94 ------------g~~~~I~~~~gda~~~---l~~l~-------------------------------------------- 114 (205)
T PF01596_consen 94 ------------GLDDRIEVIEGDALEV---LPELA-------------------------------------------- 114 (205)
T ss_dssp ------------TGGGGEEEEES-HHHH---HHHHH--------------------------------------------
T ss_pred ------------CCCCcEEEEEeccHhh---HHHHH--------------------------------------------
Confidence 1234688877775431 11000
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEecccccc-ccc---------cHHHHH
Q 020125 233 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FNN---------AARHLR 302 (330)
Q Consensus 233 ~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfG-v~g---------g~~~F~ 302 (330)
.....++||+|+-=- +...|...++.+.++|+ ++|++. +---.+.| |.. .+++|.
T Consensus 115 ----------~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~-~ggvii-~DN~l~~G~V~~~~~~~~~~~~ir~f~ 179 (205)
T PF01596_consen 115 ----------NDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLR-PGGVII-ADNVLWRGSVADPDDEDPKTVAIREFN 179 (205)
T ss_dssp ----------HTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEE-EEEEEE-EETTTGGGGGGSTTGGSHHHHHHHHHH
T ss_pred ----------hccCCCceeEEEEcc---cccchhhHHHHHhhhcc-CCeEEE-EccccccceecCccchhhhHHHHHHHH
Confidence 001246899998633 36778888888888886 766665 43333333 111 267899
Q ss_pred HhhhhcCceeEEE
Q 020125 303 SLVDEEGIFGAHL 315 (330)
Q Consensus 303 ~~vee~G~f~~~~ 315 (330)
+++.++--|.+-+
T Consensus 180 ~~i~~d~~~~~~l 192 (205)
T PF01596_consen 180 EYIANDPRFETVL 192 (205)
T ss_dssp HHHHH-TTEEEEE
T ss_pred HHHHhCCCeeEEE
Confidence 9999876666654
No 133
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.89 E-value=3.1e-05 Score=72.12 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
++.++.-|.+.+... ...++|++|||+|||||..+..++..|+++|++.|.++.++
T Consensus 56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l 111 (228)
T TIGR00478 56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQL 111 (228)
T ss_pred hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 678888888888765 24689999999999999999999999999999999999877
No 134
>PRK04457 spermidine synthase; Provisional
Probab=97.88 E-value=6.9e-05 Score=70.86 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
..++|||+|||+|.....++. ....+|++.|+++++++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~ 105 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV 105 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 468999999999999887654 344589999999999865
No 135
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.88 E-value=6.9e-05 Score=74.70 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=38.2
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+.+|||++||+|..|+.+++ .++.+|++.|.|+.+++. ...|+.+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N 104 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELN 104 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 56899999999999999875 567799999999999865 35666655
No 136
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.87 E-value=0.00051 Score=62.05 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQ 146 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~ 146 (330)
.-+|.+++|+|||||-++|-+++.+ ..+|++.|.+++.++. +++|...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~-----~~~N~~~ 80 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL-----IERNAAR 80 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHH-----HHHHHHH
Confidence 4578899999999999999988654 3699999999999854 5666553
No 137
>PRK06202 hypothetical protein; Provisional
Probab=97.87 E-value=6.6e-05 Score=68.94 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCEEEEEcccCCHHHHHHHH----cCC-CeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~----~ga-~~V~~tD~~~~vl~~ 134 (330)
++.+|||+|||+|..+..++. .|. .+|+++|+++++++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~ 103 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF 103 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence 567999999999988777653 232 389999999999854
No 138
>PLN02476 O-methyltransferase
Probab=97.87 E-value=0.00061 Score=65.28 Aligned_cols=138 Identities=12% Similarity=0.175 Sum_probs=88.2
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.+.|+|||+|+++|..++.+++. + ..+|+..|.+++.++. .+.|+..+. +..++++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aG---------------------l~~~I~l 174 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAG---------------------VSHKVNV 174 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcC---------------------CCCcEEE
Confidence 47899999999999999998863 1 3479999999998755 345554331 3346777
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..||-.+ .++.+. .....++||+
T Consensus 175 i~GdA~e---~L~~l~------------------------------------------------------~~~~~~~FD~ 197 (278)
T PLN02476 175 KHGLAAE---SLKSMI------------------------------------------------------QNGEGSSYDF 197 (278)
T ss_pred EEcCHHH---HHHHHH------------------------------------------------------hcccCCCCCE
Confidence 7776322 111000 0012357998
Q ss_pred EEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc-c---------ccHHHHHHhhhhcCceeEEEE
Q 020125 253 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-N---------NAARHLRSLVDEEGIFGAHLI 316 (330)
Q Consensus 253 ILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv-~---------gg~~~F~~~vee~G~f~~~~~ 316 (330)
|+-- . +...|...++.+.++|+ ++|++.+ ---.+.|. - -+.++|.+.+.++--|.+.++
T Consensus 198 VFID-a--~K~~Y~~y~e~~l~lL~-~GGvIV~-DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 198 AFVD-A--DKRMYQDYFELLLQLVR-VGGVIVM-DNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred EEEC-C--CHHHHHHHHHHHHHhcC-CCcEEEE-ecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 8752 1 24678888888888886 7787554 33333331 0 147999999988766666554
No 139
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=1.8e-05 Score=68.95 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=40.6
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhh
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTT 136 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t 136 (330)
.++.||+++|||||+|.+++.++..++..|++.|+++++|+.++
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 46899999999999999999999999999999999999997753
No 140
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.85 E-value=1.6e-05 Score=73.94 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=45.9
Q ss_pred CCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc----ccccc------ccHHHHHHhhhhcCceeEE
Q 020125 246 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN----YVGFN------NAARHLRSLVDEEGIFGAH 314 (330)
Q Consensus 246 ~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~----yfGv~------gg~~~F~~~vee~G~f~~~ 314 (330)
...+||+|.++|++-.--.++.++-....+|. |+|.+-+....- .|-++ .+-.--+++++..|+-.+.
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 46799999999999888999999999999886 778765543211 01121 1233445677778863333
No 141
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=9.5e-06 Score=76.92 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC
Q 020125 69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG 118 (330)
Q Consensus 69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g 118 (330)
+|+.+|++++.|..++.+.+ ..+.+++|.++|||.++..+.+++..
T Consensus 67 tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~ 112 (262)
T KOG2497|consen 67 TGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP 112 (262)
T ss_pred hccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc
Confidence 67889999999999999875 44889999999999999997777764
No 142
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.83 E-value=8.6e-05 Score=71.37 Aligned_cols=49 Identities=31% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
.+||+||+|=|=||-.|++|++.||++|+..|.+..+|+. ...|+.+|.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-a~~N~~lNg 170 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-AKENAALNG 170 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-HHHHHHHTT
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHcC
Confidence 4799999999999999999999999999999999999966 456777663
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=97.82 E-value=0.00031 Score=65.90 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCCEEEEEcccCCHHHHHHHHc----CCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~----ga~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 4779999999999999988753 34589999999998865
No 144
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.82 E-value=0.00031 Score=62.84 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+++|||+|||+|.....++......+++.|+++++++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~ 51 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLA 51 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHH
Confidence 567999999999998877765444478999999987743
No 145
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.78 E-value=6.7e-05 Score=70.16 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
++..|+|++++++.- -.++.+++.+.+.||+++|++.+-
T Consensus 98 e~SVDlI~~Aqa~HW-Fdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 98 EESVDLITAAQAVHW-FDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred CcceeeehhhhhHHh-hchHHHHHHHHHHcCCCCCEEEEE
Confidence 678999999999864 457889999999999888775543
No 146
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.76 E-value=0.00025 Score=68.26 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.6
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~ 134 (330)
.+.+|||||||+|.....++... ..+|++.|+++++|+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE 103 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence 56899999999999887776553 2589999999999855
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.75 E-value=0.00034 Score=70.62 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
.+|.+|||+|||+|..++.++.. +..+|++.|.++..++. .+.|+.+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~-~~~n~~r 299 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK-LQENAQR 299 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH-HHHHHHH
Confidence 46889999999999988877653 23589999999999855 2344443
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.75 E-value=0.00079 Score=63.72 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.5
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
..++||++|||+|.....+++.. +.+|++.|+++++++.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~ 111 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL 111 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence 45699999999998777666654 6799999999999865
No 149
>PLN02366 spermidine synthase
Probab=97.74 E-value=0.00085 Score=65.14 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~ 135 (330)
..++||++|||.|.....+++. +..+|++.|++++|++.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a 131 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS 131 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 4789999999999887777765 457899999999998763
No 150
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.72 E-value=0.00023 Score=71.13 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
..+..+||+|||+|...+.+|+.. ...+++.|+++.+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 346799999999999998888653 3589999999999865
No 151
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.71 E-value=0.00077 Score=67.90 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 75 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 75 ~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
.++..++..|. .-+|.+|||+|||+|..++.++. .+..+|++.|.++..++.+ ..|+.
T Consensus 225 ~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~-~~n~~ 283 (426)
T TIGR00563 225 ASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRV-YENLK 283 (426)
T ss_pred HHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHHH
Confidence 45566666663 23678999999999998888775 3445899999999998652 34444
No 152
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.68 E-value=0.00018 Score=71.57 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+.+|||+-||+|..||-++.. |+++|++.|.|+++++. +..|++.|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~-i~~N~~~N 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVES-IKNNVEYN 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHh
Confidence 458999999999999999986 78999999999999854 34555544
No 153
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.67 E-value=0.001 Score=63.05 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=52.4
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe---ccccccccc-------------------cHHHHHHh
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL 304 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~---k~~yfGv~g-------------------g~~~F~~~ 304 (330)
..+||+|-+--++=.-+.--.|++-|++.|+ |+|++++|. =++|...++ .+..|.+.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v 227 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV 227 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence 3589999999999888888999999999997 699999883 234433332 46677788
Q ss_pred hhhcCceeEEEEee
Q 020125 305 VDEEGIFGAHLIKE 318 (330)
Q Consensus 305 vee~G~f~~~~~~e 318 (330)
++..|+ ++.....
T Consensus 228 ~~p~GF-~v~~~tr 240 (265)
T PF05219_consen 228 FEPAGF-EVERWTR 240 (265)
T ss_pred HHhcCC-EEEEEec
Confidence 888884 5554443
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.66 E-value=0.0003 Score=66.40 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
-+|.+|||+|||+|-.++.++.. ....|++.|.++..++. ++.|+.+|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~-~~~n~~~~ 119 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV-LIANINRC 119 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH-HHHHHHHc
Confidence 36889999999999988876643 23489999999999865 34555544
No 155
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.62 E-value=0.00065 Score=68.75 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
.+|.+|||+|||+|--++.++.. +..+|++.|.++..++. +..|+.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~-~~~n~~ 283 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL-VEKHAK 283 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH-HHHHHH
Confidence 46889999999999988877653 34589999999999865 234443
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.57 E-value=0.0009 Score=64.51 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+++.+.+.. ...++.+|||+|||+|..+..++..+ .+|++.|+|+.+++.
T Consensus 23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~ 73 (294)
T PTZ00338 23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAE 73 (294)
T ss_pred HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence 3444454432 34478899999999999998888765 489999999999854
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.56 E-value=0.00031 Score=66.58 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=46.5
Q ss_pred CCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 63 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 63 ~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+.++.|--.+++.. +++.+.+.. ..-++.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus 15 ~~~k~~gq~fl~~~~--i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~ 79 (272)
T PRK00274 15 RAKKSLGQNFLIDEN--ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI 79 (272)
T ss_pred CCCcccCcCcCCCHH--HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 344444442355543 445555442 234778999999999999999988876 89999999999865
No 158
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0017 Score=58.78 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=38.5
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+.|.++|||=||+|.+|+-|+..||+.|++.|.|..++..
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 47899999999999999999999999999999999998854
No 159
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0006 Score=62.67 Aligned_cols=57 Identities=19% Similarity=0.075 Sum_probs=43.4
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.|-+...+...|.+.. ..-++.+|||+|||+|-.+-.+++... +|+..|..++..+.
T Consensus 53 qtis~P~~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~ 109 (209)
T COG2518 53 QTISAPHMVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQ 109 (209)
T ss_pred ceecCcHHHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHH
Confidence 4556665555555553 456889999999999998888777644 99999999987644
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.43 E-value=0.00059 Score=62.36 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.-+|.+|+|+-||.|..+|.+++ .+++.|++.|.||.+++. +..|+.+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~-L~~Ni~lN 148 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY-LKENIRLN 148 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH-HHHHHHHT
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH-HHHHHHHc
Confidence 34688999999999999999997 445689999999999976 46777777
No 161
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.41 E-value=0.0011 Score=63.28 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=51.5
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHHHh
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 147 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~ 147 (330)
-||.- .+++++.+.... ...+++..+||+|||+|..++.++. .+...|+++|.++.++.. +..|++++...+
T Consensus 127 RpETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l~g 199 (328)
T KOG2904|consen 127 RPETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKLSG 199 (328)
T ss_pred CccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhhcC
Confidence 35543 344444443321 2456777999999999999988653 556799999999999866 678999887643
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.40 E-value=0.0065 Score=56.36 Aligned_cols=135 Identities=18% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-C-CCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-g-a~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
...|+|||+|.+.|..++.++.. . ..+++.+|+|++..+ ..+.|+... .+..++.+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-----~A~~n~~~a-----------------g~~~~i~~ 115 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-----IARENLAEA-----------------GVDDRIEL 115 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-----HHHHHHHHc-----------------CCcceEEE
Confidence 37899999999999999997752 2 358999999999874 456666532 13345665
Q ss_pred ee-cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 020125 173 YA-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 251 (330)
Q Consensus 173 ~~-gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fD 251 (330)
.. ||+-+. ++ . ...+.||
T Consensus 116 ~~~gdal~~---l~---------------------------------------------------------~-~~~~~fD 134 (219)
T COG4122 116 LLGGDALDV---LS---------------------------------------------------------R-LLDGSFD 134 (219)
T ss_pred EecCcHHHH---HH---------------------------------------------------------h-ccCCCcc
Confidence 55 454331 00 0 1247899
Q ss_pred EEEE-eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc-----------cccccccHHHHHHhhhhcCceeEEEEe
Q 020125 252 VILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-----------YVGFNNAARHLRSLVDEEGIFGAHLIK 317 (330)
Q Consensus 252 vILa-sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~-----------yfGv~gg~~~F~~~vee~G~f~~~~~~ 317 (330)
+|+. +| ...|+..++.+..+|+ |+|++++--=-. +--...+++.|.+.+.++--+...++-
T Consensus 135 liFIDad----K~~yp~~le~~~~lLr-~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 135 LVFIDAD----KADYPEYLERALPLLR-PGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred EEEEeCC----hhhCHHHHHHHHHHhC-CCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence 8875 43 4456666666666786 888887642111 000112478898888887555666555
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.23 E-value=0.0091 Score=56.30 Aligned_cols=138 Identities=15% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.+-++|||+|+++|..++.++.. .-.+|+..|.+++..+. .+.|+... .+..+|++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-Ar~~~~~a---------------------g~~~~I~~ 135 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-GLPVIQKA---------------------GVAHKIDF 135 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHC---------------------CCCCceEE
Confidence 46789999999999999987753 12489999999987754 23333311 13457888
Q ss_pred eecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 020125 173 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 252 (330)
Q Consensus 173 ~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDv 252 (330)
..|+..+ .++.+ . +.....++||+
T Consensus 136 ~~G~a~e---~L~~l--------------------------------------------~---------~~~~~~~~fD~ 159 (247)
T PLN02589 136 REGPALP---VLDQM--------------------------------------------I---------EDGKYHGTFDF 159 (247)
T ss_pred EeccHHH---HHHHH--------------------------------------------H---------hccccCCcccE
Confidence 7777433 11100 0 00011368999
Q ss_pred EEE-eccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccc----------------cccHHHHHHhhhhcCceeEEE
Q 020125 253 ILL-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------------NNAARHLRSLVDEEGIFGAHL 315 (330)
Q Consensus 253 ILa-sD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv----------------~gg~~~F~~~vee~G~f~~~~ 315 (330)
|+- +| ...|...++.+.++|+ ++|++.+ ---...|. ..++++|.+.+.++--|.+.+
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~-~GGviv~-DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~l 233 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVK-VGGVIGY-DNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICM 233 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcC-CCeEEEE-cCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 876 33 5667777777777886 7787553 22222221 013568888888876666655
Q ss_pred E
Q 020125 316 I 316 (330)
Q Consensus 316 ~ 316 (330)
+
T Consensus 234 l 234 (247)
T PLN02589 234 L 234 (247)
T ss_pred E
Confidence 4
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.23 E-value=0.001 Score=64.94 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=35.7
Q ss_pred CCCEEEEEcccCCHHHHHH-HHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFA-CLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a-~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+.+|||+|||+|++...+ ++....+++++|+++.+++. ...|+..|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~-A~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS-AQAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH-HHHHHHhc
Confidence 4579999999998665444 44333489999999999976 46777777
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0035 Score=59.04 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
..|.++.+||+||-+|.+++..++ .|++.|++.|+++-.++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR 97 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence 468999999999999999999876 689999999999977644
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.18 E-value=0.0019 Score=60.66 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+++.+.+.. ...++++|||+|||+|..++.++..+ .+|++.|+++.+++.
T Consensus 16 ~~~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~ 66 (258)
T PRK14896 16 RVVDRIVEYA----EDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEF 66 (258)
T ss_pred HHHHHHHHhc----CCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence 3445555442 24578899999999999999999885 489999999998855
No 167
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.17 E-value=0.0026 Score=58.43 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCC-CeEEEEeCChHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga-~~V~~tD~~~~vl~~ 134 (330)
++..+...+.+.. ..-+|.+|||+|||+|..+-.++. .|. ..|+..|.++.+.+.
T Consensus 56 s~P~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 56 SAPSMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp --HHHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred hHHHHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 3444444444443 355889999999999998877665 343 369999999998755
No 168
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.13 E-value=0.0011 Score=60.31 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
-+|.+|||||||.|-+--.+.........+.|++++-+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v 49 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV 49 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH
Confidence 36889999999999766555543334899999999754
No 169
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.13 E-value=0.0012 Score=61.12 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~ 134 (330)
.-.+|.|||||+|...-.++ +.....|++.|.+++||+.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~ 69 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAK 69 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHH
Confidence 45689999999998775554 5666699999999999854
No 170
>PLN02823 spermine synthase
Probab=97.10 E-value=0.015 Score=57.23 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~ 135 (330)
..++||.+|+|.|.....+.+. +..+|++.|+++++++.+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la 143 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC 143 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 4579999999999888766664 567999999999999763
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.94 E-value=0.0043 Score=58.02 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..++.+|||+|||+|..+..++..+. +|++.|.++.+++.
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~ 66 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEI 66 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 34688999999999999999988765 79999999998844
No 172
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.02 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH-cC------CCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACL-KG------AGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~-~g------a~~V~~tD~~~~vl 132 (330)
..++.+|||++||||-+..-... .+ .++|++.|+|+++|
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 45789999999999988776553 22 37999999999998
No 173
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.87 E-value=0.015 Score=53.48 Aligned_cols=96 Identities=25% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
..++|+|+|+|+|..++.+++. -..++++.|. |++++.. .. ..+|.+.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~-----~~------------------------~~rv~~~~ 149 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQA-----KE------------------------ADRVEFVP 149 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCH-----HH------------------------TTTEEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcc-----cc------------------------cccccccc
Confidence 4468999999999999887753 3348999999 5566331 11 13677777
Q ss_pred cccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 020125 175 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 254 (330)
Q Consensus 175 gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~~~~~~~~fDvIL 254 (330)
||.-. + ... +|+|+
T Consensus 150 gd~f~-~----------------------------------------------------------------~P~-~D~~~ 163 (241)
T PF00891_consen 150 GDFFD-P----------------------------------------------------------------LPV-ADVYL 163 (241)
T ss_dssp S-TTT-C----------------------------------------------------------------CSS-ESEEE
T ss_pred ccHHh-h----------------------------------------------------------------hcc-cccee
Confidence 77431 0 112 99999
Q ss_pred Eecccc--CcccHHHHHHHHHHHcCCCC--cEEEEEec
Q 020125 255 LTEIPY--SVTSLKKLYLLIKKCLRPPY--GVVYLATK 288 (330)
Q Consensus 255 asD~iY--~~~~~~~L~~~i~~~L~~p~--Gv~~lA~k 288 (330)
.+-+++ .++....|++-+...|+ |+ |+++|.--
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~ 200 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEM 200 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEee
Confidence 999995 45666677888888886 66 99998753
No 174
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.86 E-value=0.0034 Score=58.89 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=37.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
+|.+|||-=-|-|-.+|.|.+.||.+|+-.+.|+.||++.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa 173 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA 173 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee
Confidence 7999999999999999999999999999999999998663
No 175
>PHA01634 hypothetical protein
Probab=96.59 E-value=0.0045 Score=53.06 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=44.6
Q ss_pred CCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 91 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 91 ~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
+...+++|+|+++|++.|-.+|+.+..||+.|++.+.++...+.. ..|+..|
T Consensus 23 ~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~-een~k~n 74 (156)
T PHA01634 23 GMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKW-EEVCAYF 74 (156)
T ss_pred hheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHH-HHHhhhh
Confidence 346799999999999999999999999999999999999876553 4566666
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=96.53 E-value=0.031 Score=53.23 Aligned_cols=39 Identities=13% Similarity=-0.118 Sum_probs=33.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
.-|+||=+|-|=|...--..+.. .+|++.|+|++|++.+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSF 110 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHH
Confidence 45899999999998777788775 4999999999999764
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.53 E-value=0.026 Score=52.55 Aligned_cols=52 Identities=21% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
-.|.+|+.+.. .-++.+||..|||.|.-.++++..|. +|++.|+++..++..
T Consensus 30 p~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~ 81 (226)
T PRK13256 30 EFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSF 81 (226)
T ss_pred HHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHH
Confidence 56666665431 22578999999999999999999998 699999999998653
No 178
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.48 E-value=0.047 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCCh
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 129 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~ 129 (330)
...+|++||||||++|-..-.+...|+ +|++.|..+
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 357899999999999999999999998 899999654
No 179
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.45 E-value=0.068 Score=49.14 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCCCccEEEEeccccCc--ccHHHHHHHHHHHcCCCCcEEEEEeccccccc--cccHHHHHHhhhhcC
Q 020125 246 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF--NNAARHLRSLVDEEG 309 (330)
Q Consensus 246 ~~~~fDvILasD~iY~~--~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv--~gg~~~F~~~vee~G 309 (330)
....||.|+++-++--. +..+.|++...++|+ ++|..++--.-.|-|. ..+-..|-.-++++.
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 45789999999998755 557789999999996 8888766433333231 346777777777654
No 180
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.45 E-value=0.054 Score=51.81 Aligned_cols=46 Identities=22% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
-...+||-=|||.|.+..-.|..|. .|.+.+.+--|+ +.-|..+|.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~ 100 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH 100 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence 4567999999999999999999998 899999999997 346666664
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.41 E-value=0.036 Score=52.97 Aligned_cols=44 Identities=18% Similarity=0.403 Sum_probs=34.9
Q ss_pred CCCCccEEEEeccc-cC-cccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125 246 GEGGYDVILLTEIP-YS-VTSLKKLYLLIKKCLRPPYGVVYLATKKN 290 (330)
Q Consensus 246 ~~~~fDvILasD~i-Y~-~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~ 290 (330)
..++||+|++=.++ |- .+....+++.+...|+ |+|+.++..--.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~ 244 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET 244 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence 35789999998864 54 4567789999999996 999999986554
No 182
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.13 Score=48.66 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
.+.|.+|||-|.|+|.++.+++. ....+|+..|+.++-++.. +.|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A-~~Nl~ 140 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA-RENLS 140 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHH-HHHHH
Confidence 67999999999999999999884 2336999999999988652 44444
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.28 E-value=0.097 Score=49.87 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~ 134 (330)
..++.+..+..+.++++.....|..++|||+|||+|....++.. ....++++.|.++.+++.
T Consensus 10 r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 10 RMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred HhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 34555666666666665445678999999999999865444332 246789999999998754
No 184
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.20 E-value=0.031 Score=55.08 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
...|.+|+|+=||.|-.+|.+|++|+..|++.|+||..++. +..|+.+|-
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~-L~eNi~LN~ 235 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-LKENIRLNK 235 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH-HHHHHHhcC
Confidence 45699999999999999999999999789999999999987 478888884
No 185
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.12 E-value=0.011 Score=49.46 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEEEEcccCCHHHHHHHHcCCC-eEEEEeCChHHHHHhhHHHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~-~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.|||+|||.|..++.++..+.+ +|++.|.++.+++. +..|+..|
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~-l~~~~~~n 45 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEI-LEENVKLN 45 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHH-HHHHHHHc
Confidence 4899999999999998887664 89999999998854 23444444
No 186
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.08 E-value=0.44 Score=44.93 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=90.3
Q ss_pred CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 67 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 67 y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
|+-++.+++.++.-|.++.++ ..+.||+||=+| =--|.||+++. ...++|+..|+++.+++. |.....
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a~ 88 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVAE 88 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHHH
Confidence 556778999999999999986 578999999999 55788988876 345799999999998854 222222
Q ss_pred HhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcchhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 020125 146 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 225 (330)
Q Consensus 146 ~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~~~~~v~~d~~~~~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~ 225 (330)
.. .+ .++.+..|...
T Consensus 89 ~~-----------------gl--~i~~~~~DlR~---------------------------------------------- 103 (243)
T PF01861_consen 89 EE-----------------GL--PIEAVHYDLRD---------------------------------------------- 103 (243)
T ss_dssp HH-----------------T----EEEE---TTS----------------------------------------------
T ss_pred Hc-----------------CC--ceEEEEecccc----------------------------------------------
Confidence 10 12 24444444222
Q ss_pred cccccccCchhhhhhcccccCCCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhh
Q 020125 226 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 305 (330)
Q Consensus 226 ~~~~~ls~~~~w~~~~~~~~~~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~v 305 (330)
.|+. .-.++||+++ +|=.|-++.+.-++.-=-.+|+.+++..|++....-- ...-..++.+.+
T Consensus 104 ----~LP~-----------~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~l 166 (243)
T PF01861_consen 104 ----PLPE-----------ELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRFL 166 (243)
T ss_dssp -------T-----------TTSS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHHH
T ss_pred ----cCCH-----------HHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHHH
Confidence 1111 1347899876 5888888877776655555788777788876433210 001235677777
Q ss_pred hhcCceeEEEEeecCCcc
Q 020125 306 DEEGIFGAHLIKEMTDRD 323 (330)
Q Consensus 306 ee~G~f~~~~~~e~~d~~ 323 (330)
-+.|+.-..++..+...+
T Consensus 167 ~~~gl~i~dii~~Fn~Y~ 184 (243)
T PF01861_consen 167 LEMGLVITDIIPDFNRYE 184 (243)
T ss_dssp HTS--EEEEEEEEEEEB-
T ss_pred HHCCcCHHHHHhhhcccc
Confidence 788988777777666433
No 187
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.99 E-value=0.18 Score=45.48 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=29.0
Q ss_pred CCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETI 132 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl 132 (330)
+++++|+|+|.|+|||.++... ..+|++.|-...=.
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~ 85 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV 85 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH
Confidence 3389999999999999977643 45899999988744
No 188
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.99 E-value=0.028 Score=52.98 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.5
Q ss_pred EEEEEcccCCHHHHHHHHcCC---CeEEEEeCChHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGA---GTVHFQDLSAETIRC 134 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga---~~V~~tD~~~~vl~~ 134 (330)
+|||+|||.|-...-..+-.+ -.|+++|+++.+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 699999999976555444222 479999999999855
No 189
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.90 E-value=0.09 Score=48.22 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=28.2
Q ss_pred CCCCEEEEEcccCCHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~-~~ga~~V~~tD~~~~vl~~ 134 (330)
-++...+|||||.|-+-+.++ ..+.++.+++++.+...+.
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~ 81 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL 81 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence 357799999999999877655 5788889999999986644
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.86 E-value=0.086 Score=47.31 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~~ 134 (330)
+=++|-.+|+-+...+ ..-.|+-|||||.|||...=+....|. ..+++.+|+++-...
T Consensus 29 I~PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~ 88 (194)
T COG3963 29 ILPSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH 88 (194)
T ss_pred ecCCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH
Confidence 6678888899888765 344788999999999999877777664 589999999997743
No 191
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.79 E-value=0.13 Score=55.25 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC---------------------------------------
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--------------------------------------- 118 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g--------------------------------------- 118 (330)
..||..|.... .+.-.+..++|-.||+|-..|-|++..
T Consensus 175 etlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 175 ENLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred HHHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 56777766542 222357899999999999998887521
Q ss_pred ----CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 119 ----AGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 119 ----a~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..++++.|+++.+++. .+.|+..|
T Consensus 252 ~~~~~~~i~G~Did~~av~~-A~~N~~~~ 279 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQA-ARKNARRA 279 (702)
T ss_pred ccccCceEEEEECCHHHHHH-HHHHHHHc
Confidence 1269999999999976 35565544
No 192
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.70 E-value=0.021 Score=53.23 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=34.1
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
+..-|||+|||+||.|-.+...| ..+++.|+++.||+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ 87 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence 56689999999999999988888 589999999999965
No 193
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.68 E-value=0.61 Score=44.05 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
...+|.+|||-|.|+|-+++++++. ...+|+-.|+.++-++ +.+.|+.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~-----~A~~n~~ 86 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAE-----KARKNFE 86 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHH-----HHHHHHH
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHH-----HHHHHHH
Confidence 4678999999999999999988752 2358999999999774 3455554
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.65 E-value=0.4 Score=44.97 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~ 135 (330)
+.++||-+|-|.|...-.+.+.. .++|++.|+++.|++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA 116 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence 68999999999997766666544 57999999999999764
No 195
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.03 Score=52.59 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=45.6
Q ss_pred chhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChH
Q 020125 74 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 130 (330)
Q Consensus 74 W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~ 130 (330)
=.+++-|.+.|.+. ...++|+++||+|+.||-..-++...||++|++.|..-.
T Consensus 61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~ 113 (245)
T COG1189 61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG 113 (245)
T ss_pred ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence 34677788888765 378999999999999999999999999999999998654
No 196
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.57 E-value=0.051 Score=46.35 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH-----cCCCeEEEEeCChHHHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~-----~ga~~V~~tD~~~~vl~~ 134 (330)
.+++++..........-+...|+|+|||.|.+|.+++. .-..+|++.|.++..++.
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 35555555432211234677999999999999999887 434599999999987643
No 197
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.13 E-value=0.1 Score=50.31 Aligned_cols=43 Identities=19% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCCccEEEEeccc--cCcccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125 247 EGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 290 (330)
Q Consensus 247 ~~~fDvILasD~i--Y~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~ 290 (330)
.++||+|++-.++ ++++....+++.+..+|+ |+|..++...-.
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sEs 265 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSEN 265 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCccc
Confidence 4789999996665 345668889999999996 899988876543
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.06 E-value=0.065 Score=47.57 Aligned_cols=60 Identities=30% Similarity=0.394 Sum_probs=43.9
Q ss_pred CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeeccc
Q 020125 98 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 177 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW 177 (330)
+.|+|+-||.|--.|..|+.. .+|++.|+++.-+++ .++|.... ....++.|..|||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~-----a~hNa~vY-----------------Gv~~~I~~i~gD~ 57 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLEC-----AKHNAEVY-----------------GVADNIDFICGDF 57 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHH-----HHHHHHHT-----------------T-GGGEEEEES-H
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEEeCCH
Confidence 469999999999999999885 489999999998855 45665532 1234799999999
Q ss_pred CCC
Q 020125 178 EEL 180 (330)
Q Consensus 178 ~~~ 180 (330)
.+.
T Consensus 58 ~~~ 60 (163)
T PF09445_consen 58 FEL 60 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 199
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.03 E-value=0.066 Score=48.77 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=29.1
Q ss_pred CCCCccEEEEeccc--cCcccHHHHHHHHHHHcCCCCcEEEEEecc
Q 020125 246 GEGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKK 289 (330)
Q Consensus 246 ~~~~fDvILasD~i--Y~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~ 289 (330)
..++||+|++-.++ ++++....+++.+..+|+ |+|..++...-
T Consensus 133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 177 (196)
T PF01739_consen 133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE 177 (196)
T ss_dssp ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence 45799999998875 344667789999999996 89999988644
No 200
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.95 E-value=0.66 Score=43.05 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCce
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 311 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f 311 (330)
.+..|+++-+=-+--.+..+-|.+.- +.|+ ++|..+||--+-+|. .+..|.+.++.-|+-
T Consensus 120 ~~svDv~VfcLSLMGTn~~~fi~EA~-RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTNWPDFIREAN-RVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGFK 179 (219)
T ss_dssp TT-EEEEEEES---SS-HHHHHHHHH-HHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTEE
T ss_pred CCceeEEEEEhhhhCCCcHHHHHHHH-heec-cCcEEEEEEecccCc---CHHHHHHHHHHCCCe
Confidence 35677777665555555555555544 4787 899999997666665 689999999999963
No 201
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.86 E-value=0.4 Score=42.74 Aligned_cols=52 Identities=29% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCC--C--------eEEEEeCChHHHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--G--------TVHFQDLSAETIRC 134 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga--~--------~V~~tD~~~~vl~~ 134 (330)
.||..|.... ..-+|..|||-=||+|-.-|-++..+. . ++++.|+++++++.
T Consensus 15 ~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~ 76 (179)
T PF01170_consen 15 TLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG 76 (179)
T ss_dssp HHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred HHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence 5666665542 223677999999999998888876433 1 27899999999865
No 202
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.80 E-value=0.12 Score=52.55 Aligned_cols=60 Identities=28% Similarity=0.353 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..|.++..+.. ...++.+||||=||.|..|+.+++. +++|+++++++++++. ...|..+|
T Consensus 279 ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~-A~~NA~~n 338 (432)
T COG2265 279 EKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEA-AQENAAAN 338 (432)
T ss_pred HHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHH-HHHHHHHc
Confidence 34444444442 2346789999999999999999965 6699999999999865 24555555
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.57 E-value=0.092 Score=51.82 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
....|.+++.+.. ...+..||||=||+|..|+.++.. +++|++.|.++++++.. ..|...|
T Consensus 181 ~~~~l~~~~~~~l-----~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A-~~Na~~N 241 (352)
T PF05958_consen 181 QNEKLYEQALEWL-----DLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDA-RENAKLN 241 (352)
T ss_dssp HHHHHHHHHHHHC-----TT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHh-----hcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHH-HHHHHHc
Confidence 3345555555443 122338999999999999999876 45999999999998552 4555555
No 204
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.51 E-value=0.026 Score=51.59 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
....+-|||+|+|+++++|+.+ |++|++.+.+|...++ ...|+..|..
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~-a~eN~~v~g~ 79 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARL-AEENLHVPGD 79 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHH-hhhcCCCCCC
Confidence 3467889999999999999988 8899999999998766 4566654443
No 205
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.50 E-value=0.21 Score=46.62 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=46.5
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeee
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 174 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~ 174 (330)
.+|.+||++|.|.|++.-+...+...+-++++-+++|++. ++.|... -..+|..+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr-----mr~~gw~-------------------ek~nViil~ 155 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR-----MRDWGWR-------------------EKENVIILE 155 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH-----HHhcccc-------------------cccceEEEe
Confidence 5899999999999998888777766677888999999854 3334321 124678888
Q ss_pred cccCCC
Q 020125 175 GDWEEL 180 (330)
Q Consensus 175 gdW~~~ 180 (330)
|-|+..
T Consensus 156 g~WeDv 161 (271)
T KOG1709|consen 156 GRWEDV 161 (271)
T ss_pred cchHhh
Confidence 998773
No 206
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.38 E-value=0.43 Score=45.95 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=31.8
Q ss_pred CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
|+||-+|-|.|-..-.+.+.. ..++++.|+++.|++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ 115 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIEL 115 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHH
Confidence 699999999998777777654 6799999999999865
No 207
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.37 E-value=1.1 Score=44.39 Aligned_cols=58 Identities=33% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
..||+.+.+.. ..-+|..|||==||||-.-|-|...|+ +|+++|++..+++. ...|+.
T Consensus 183 P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~g-----ak~Nl~ 240 (347)
T COG1041 183 PRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRG-----AKINLE 240 (347)
T ss_pred HHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhh-----hhhhhh
Confidence 56777777653 456899999999999999999999998 89999999999966 455554
No 208
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.06 E-value=0.14 Score=48.24 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
...+++.+.+.. ..-++..|||+|+|+|..+-.++..+ ++|++.+.++...+.
T Consensus 15 ~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~ 67 (262)
T PF00398_consen 15 DPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKH 67 (262)
T ss_dssp HHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHH
Confidence 345566666554 22378999999999999999998887 699999999987644
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.84 E-value=0.84 Score=43.59 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--------cCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--------~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
..++++|.+.. ....+.+|+|-.||+|-.-+.+.. ....++++.|+++.++..+ .-|+.
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la-~~nl~ 98 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA-KLNLL 98 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH-HHHHH
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH-Hhhhh
Confidence 45566666554 234677999999999987777654 2456899999999988663 33443
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.23 E-value=0.25 Score=47.00 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
+++..+ .+.+.+.. ...++..|||+|+|.|-+...++..++ +|++.++|+.++..
T Consensus 13 L~d~~v--~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~ 67 (259)
T COG0030 13 LIDKNV--IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEV 67 (259)
T ss_pred ccCHHH--HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHH
Confidence 555544 44444332 344588999999999999999998876 79999999998743
No 211
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.23 E-value=0.11 Score=47.91 Aligned_cols=56 Identities=30% Similarity=0.382 Sum_probs=43.5
Q ss_pred cchh---HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 73 CWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 73 ~W~s---s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
-|+. ...|.+++.+. ..-.+.+||.-|||.|.=.+.++..|. +|++.|+++.+++.
T Consensus 16 ~w~~~~~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp TT--TTSTHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CCCCCCCCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 4555 47888888762 133567999999999999999999997 89999999998855
No 212
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=93.12 E-value=0.073 Score=50.11 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..+.++++|||.|.+.-.+...|..+++.+|.+-.|++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 346899999999998888888889999999999999854
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=1.3 Score=40.79 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc-CC-CeEEEEeCCh
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA 129 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~-ga-~~V~~tD~~~ 129 (330)
++-|.+...+. ...-+|++|+||||-.|-.+-++++. |+ ..|++.|+.|
T Consensus 30 a~KL~el~~k~----~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 30 AYKLLELNEKF----KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHHHhc----CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 34444444433 24456799999999999999887764 33 2499999988
No 214
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=92.82 E-value=0.021 Score=52.93 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEe---cccccc--cc------------------ccHHHHHH
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVG--FN------------------NAARHLRS 303 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~---k~~yfG--v~------------------gg~~~F~~ 303 (330)
+-+||+|++-.++=.-..--+|++-|+..|++.+|.+.+|- -.||.- ++ ..+..|.+
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e 246 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFME 246 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHH
Confidence 45788888877766666666788889888887699888772 344432 11 24667888
Q ss_pred hhhhcCc
Q 020125 304 LVDEEGI 310 (330)
Q Consensus 304 ~vee~G~ 310 (330)
++++.|+
T Consensus 247 ~lr~~g~ 253 (288)
T KOG3987|consen 247 LLRNCGY 253 (288)
T ss_pred HHHhcCc
Confidence 8888884
No 215
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.80 E-value=0.38 Score=46.76 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred CCEEEEEcccCC-HHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtG-L~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.-++||+|+|+- +-.|..++ .|- ++++||+++..++.+ ..||..|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A-~~nv~~N 149 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESA-RENVERN 149 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHH-HHHHHHT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHH-HHHHHhc
Confidence 458999999974 54555544 454 899999999999663 5666666
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.55 E-value=0.44 Score=45.89 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
...++...+... ..-.+..|||+|-|||.+...+..+|+ +|++.++++.++..
T Consensus 43 Np~v~~~I~~ka-----~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvae 95 (315)
T KOG0820|consen 43 NPLVIDQIVEKA-----DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAE 95 (315)
T ss_pred CHHHHHHHHhcc-----CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHH
Confidence 344555544433 345677999999999999999998876 89999999998844
No 217
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.30 E-value=0.78 Score=42.81 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=29.2
Q ss_pred CEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHH
Q 020125 98 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~ 134 (330)
..+||+|||.|-.-+..|+.. -..+++.++...++..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~ 87 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK 87 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence 589999999998777777643 3589999998877643
No 218
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=92.29 E-value=0.25 Score=48.53 Aligned_cols=59 Identities=24% Similarity=0.160 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
=|=-+..+..|+.... ....+.+|||||||-|-=-.=-...+++.++++|++.+.|+.+
T Consensus 43 NwvKs~LI~~~~~~~~----~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK----QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEA 101 (331)
T ss_dssp HHHHHHHHHHHCHCCC----CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhh----ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 3555555555554221 1127889999999987433333456788999999999998664
No 219
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.21 E-value=4.1 Score=31.10 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=24.5
Q ss_pred EEEEcccCCHHHHHHHHcCC--CeEEEEeCChHHHH
Q 020125 100 VLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIR 133 (330)
Q Consensus 100 VLELGcGtGL~gi~a~~~ga--~~V~~tD~~~~vl~ 133 (330)
++|+|||+|... .+..... ..+++.|.++.++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~ 86 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLA 86 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHH
Confidence 999999999876 3333322 37888999998874
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=92.18 E-value=0.15 Score=47.30 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.5
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHH
Q 020125 97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAET 131 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~v 131 (330)
+++++|+|+|.|+|||.++. .-..+|++.|-+..=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk 103 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK 103 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH
Confidence 79999999999999999774 333469999987763
No 221
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.16 E-value=3.3 Score=38.50 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=46.4
Q ss_pred CCCCccEEEEeccccCcccHHH---HHHHHHHHcCCCCcE-----EEEE------eccccccccccHHHHHHhhhhcCce
Q 020125 246 GEGGYDVILLTEIPYSVTSLKK---LYLLIKKCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF 311 (330)
Q Consensus 246 ~~~~fDvILasD~iY~~~~~~~---L~~~i~~~L~~p~Gv-----~~lA------~k~~yfGv~gg~~~F~~~vee~G~f 311 (330)
..++||+|..|=++-....... .+.-..++|+ ++|. .+|. +..+|+ ....|...|+.-|+.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT 175 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence 3578999999999876665543 3444445786 6677 6665 467776 468999999999986
Q ss_pred eEEE
Q 020125 312 GAHL 315 (330)
Q Consensus 312 ~~~~ 315 (330)
.++.
T Consensus 176 ~~~~ 179 (219)
T PF11968_consen 176 RVKY 179 (219)
T ss_pred EEEE
Confidence 5543
No 222
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.01 E-value=0.64 Score=42.64 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEEcccCCHHHHHHHHcCC-CeEEEEeCChHHHHH
Q 020125 100 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 134 (330)
Q Consensus 100 VLELGcGtGL~gi~a~~~ga-~~V~~tD~~~~vl~~ 134 (330)
|.|+||-.|.+++++++.|. .+|+++|+++.-++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~ 36 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEK 36 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 68999999999999998775 579999999998854
No 223
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.73 E-value=0.23 Score=50.62 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.5
Q ss_pred EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.||++|.||||+++.|++.||..|++++.=.-|..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ 104 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL 104 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence 699999999999999999999999999887767655
No 224
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.17 E-value=0.86 Score=39.59 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEE
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 286 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA 286 (330)
.+.||+|+++-++-+.......++-+.+.|+ |+|.+++.
T Consensus 42 ~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 80 (160)
T PLN02232 42 DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL 80 (160)
T ss_pred CCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 4689999999888777777888888888996 88988765
No 225
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=2.1 Score=39.85 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcccCCHHHHHHH-HcCCC--eEEEEeCChHHHHHhhHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFAC-LKGAG--TVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~-~~ga~--~V~~tD~~~~vl~~~t~pNv~ 141 (330)
..+|.+.|++|+|+|.++-.++ ..|+. .+++.|+-+++++. .+.|+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~-Sk~nl~ 129 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEY-SKKNLD 129 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHH-HHHHHH
Confidence 4689999999999997765544 44443 34999999998865 234443
No 226
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=90.94 E-value=2.9 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccccccccccHHHHHHhhhhcCceeEEE
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 315 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg~~~F~~~vee~G~f~~~~ 315 (330)
++..||.+-+=-+--.+. ..++.-..+.|+ ++|.+|||--+.+|- .+..|.+.+...||...+.
T Consensus 226 d~svDvaV~CLSLMgtn~-~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMGTNL-ADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cCcccEEEeeHhhhcccH-HHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence 345666655444433333 334444666786 999999997666664 4566999999999865443
No 227
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.86 E-value=0.28 Score=50.66 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=47.5
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+.+|-.++.+.. ..-.++.++|+=||||+.|+.+++ |+++|++.+++++.++-. ..|.+.|
T Consensus 367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA-~~nA~~N 428 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDA-EKNAQIN 428 (534)
T ss_pred HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchh-hhcchhc
Confidence 4466667777653 233568999999999999999986 588999999999998653 4555555
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=90.71 E-value=0.53 Score=41.32 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhhhhcCCCCC-CCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChH
Q 020125 76 SSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 130 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~-~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~ 130 (330)
|+.-|.+.+.... .... .+.+||||||++|-.+-++...+ +.+|++.|..+.
T Consensus 5 a~~KL~ei~~~~~---~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKFK---IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTTS---SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHCC---CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4455666665431 1122 45899999999999999998887 679999999875
No 229
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.23 E-value=4 Score=40.21 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=87.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceeeeec
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 175 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~g 175 (330)
..-+||-=|||.|.++.-++..|. ++-+-+.+-.|+ +-.+..+|..+..+.- .+-|=||-++-
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml---i~S~FiLN~~~~~nq~-------------~IYPfIh~~sn 212 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML---ICSSFILNYCKQENQF-------------TIYPFIHQYSN 212 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH---HHHHHHHHhhccCCcE-------------EEEeeeecccc
Confidence 344899999999999998888886 456556666666 4478888876532210 12233444455
Q ss_pred ccCCCcchhhhhccccccc-cccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcc----cccCCCCc
Q 020125 176 DWEELPTVLSVVRNDVSEV-TTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASE----ADQGEGGY 250 (330)
Q Consensus 176 dW~~~~~~~~~v~~d~~~~-~~~~~~~f~~~d~~~~~~s~~~~~i~~~~~~~~~~~ls~~~~w~~~~~----~~~~~~~f 250 (330)
.|.-.+.+.++--+|..-. +.+..-+| .-|...+- .....+.|
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~f--------------------------------sicaGDF~evy~~s~~~~~~ 260 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSF--------------------------------SICAGDFLEVYGTSSGAGSY 260 (369)
T ss_pred ccccccccccccCccccccccCCCCCCc--------------------------------cccccceeEEecCcCCCCcc
Confidence 5555444433111110000 00010111 01322221 12344679
Q ss_pred cEEEEeccccCccc---HHHHHHHHHHHcCCCCcEEE-EEeccccccccc----------cHHHHHHhhhhcCc
Q 020125 251 DVILLTEIPYSVTS---LKKLYLLIKKCLRPPYGVVY-LATKKNYVGFNN----------AARHLRSLVDEEGI 310 (330)
Q Consensus 251 DvILasD~iY~~~~---~~~L~~~i~~~L~~p~Gv~~-lA~k~~yfGv~g----------g~~~F~~~vee~G~ 310 (330)
|+|+++ |..+. .=..+++|.++|+ |+|+.. +.--.|.|--.+ +.......++..|+
T Consensus 261 d~VvTc---fFIDTa~NileYi~tI~~iLk-~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF 330 (369)
T KOG2798|consen 261 DVVVTC---FFIDTAHNILEYIDTIYKILK-PGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGF 330 (369)
T ss_pred ceEEEE---EEeechHHHHHHHHHHHHhcc-CCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCc
Confidence 999999 44444 4456778888887 666533 344444443222 35566677777775
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=88.42 E-value=1.3 Score=43.05 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=33.9
Q ss_pred CCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~vl~~ 134 (330)
-+|..+||.+||.|--+..++... ..+|++.|.++++++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ 59 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA 59 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence 357799999999999998887653 3589999999999865
No 231
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.30 E-value=0.71 Score=45.45 Aligned_cols=40 Identities=33% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
-.|.+||-+|||. ||..+.+++ .||++|+++|..+.-|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~ 209 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL 209 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence 4688999999995 998877765 799999999999987754
No 232
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.20 E-value=1.3 Score=39.99 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=28.2
Q ss_pred CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 98 KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
..+||+|||.|-.-+..|.. .-..+++.|+....+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~ 56 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK 56 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence 38999999999888877653 34699999999988754
No 233
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=87.35 E-value=4.3 Score=40.87 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCC-CEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHHh
Q 020125 95 FRG-KRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 95 ~~~-k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~~ 135 (330)
+++ .+||-||-|-||..--..+. +..+|+..|.+|.|++..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela 329 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA 329 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence 344 48999999999887776665 478999999999999774
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=87.13 E-value=1.5 Score=41.50 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=34.8
Q ss_pred EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 141 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~ 141 (330)
+|||+-+|+|--|+.++..|++ |++.|.++.+... +..|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaal-L~dgL~ 131 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAAL-LDDGLA 131 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHH-HHHHHH
Confidence 8999999999999999999995 9999999987744 344444
No 235
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.02 E-value=4.9 Score=41.48 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCCCEEEEEcccCCHHHHHHHH-c-CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACL-K-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~-~-ga~~V~~tD~~~~vl~~ 134 (330)
-+|.+|||+.||.|-=+..++. . +...|++.|+++.=++.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~ 153 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKV 153 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence 3788999999999987766553 2 33589999999987754
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=86.42 E-value=1.3 Score=45.94 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC---------CCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG---------AGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g---------a~~V~~tD~~~~vl~~ 134 (330)
...+|||.+||+|...+.++... ..++++.|+++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence 45699999999998887776421 1578999999998865
No 237
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=85.82 E-value=2.6 Score=43.68 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=30.2
Q ss_pred CCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
.+..+||+|||.|-.-+..|.. --..+++.|.....+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~ 386 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVAN 386 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence 4668999999999877776654 33589999998876643
No 238
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.07 E-value=31 Score=34.78 Aligned_cols=99 Identities=21% Similarity=0.104 Sum_probs=60.5
Q ss_pred cccCCCCCCCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCC------------
Q 020125 53 DIIGFTGSEMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG------------ 120 (330)
Q Consensus 53 ~~~g~~~~dl~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~------------ 120 (330)
|+.|.+=+..---.|.|+..+= ..||..|.... ..-.+...+|-=||+|-+-|-||+.++.
T Consensus 155 DttG~sLhkRGyR~~~g~ApLk---etLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~ 227 (381)
T COG0116 155 DTTGDSLHKRGYRVYDGPAPLK---ETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFE 227 (381)
T ss_pred eCCCcchhhccccccCCCCCch---HHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchh
Confidence 4444432333333455544222 35555555331 2345578999999999999999887631
Q ss_pred ----------------------------eEEEEeCChHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCcccCCCCceee
Q 020125 121 ----------------------------TVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 172 (330)
Q Consensus 121 ----------------------------~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~ 172 (330)
.+++.|+++.+++. .+.|...+ .+...+.|
T Consensus 228 ~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~-----Ak~NA~~A-----------------Gv~d~I~f 285 (381)
T COG0116 228 FWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG-----AKANARAA-----------------GVGDLIEF 285 (381)
T ss_pred hhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH-----HHHHHHhc-----------------CCCceEEE
Confidence 37799999999966 34565432 23456777
Q ss_pred eecccCCC
Q 020125 173 YAGDWEEL 180 (330)
Q Consensus 173 ~~gdW~~~ 180 (330)
..+|-..+
T Consensus 286 ~~~d~~~l 293 (381)
T COG0116 286 KQADATDL 293 (381)
T ss_pred EEcchhhC
Confidence 77775443
No 239
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=82.93 E-value=1.1 Score=43.84 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=55.3
Q ss_pred cccchhHHHHHHHH--hhhhhcCCCCCCCCEEEEEcccCCHHHH-HHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHH
Q 020125 71 LKCWESSIDLVNVL--KHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 146 (330)
Q Consensus 71 ~k~W~ss~~La~~l--~~~~~~~~~~~~~k~VLELGcGtGL~gi-~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~ 146 (330)
..+|+....|=.+= .+..+-....-.|..|.||=+|-|-..+ +...+||+.|++.|.||..++. ++.|++.|...
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa-LrR~~~~N~V~ 244 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA-LRRNAEANNVM 244 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH-HHHHHHhcchH
Confidence 34888776654321 1111112345567889999999999888 7888999999999999999987 57899998654
No 240
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.69 E-value=3.4 Score=41.35 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCEEEEEcccCCHHHHHHHH-cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~-~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.++|+|-=+|||+=||-.+. .+..+|++-|+||+.+++ ...|+.+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avel-ik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVEL-IKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHH-HHHHHHhc
Confidence 78999999999999998775 455589999999999987 67899999
No 241
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=77.98 E-value=4.5 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=31.7
Q ss_pred EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~ 133 (330)
+|+||-||.|..++.+...|.+.|.+.|+++.+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~ 36 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAE 36 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHH
Confidence 68999999999988888889989999999999874
No 242
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=76.89 E-value=4 Score=39.99 Aligned_cols=40 Identities=33% Similarity=0.349 Sum_probs=32.4
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~~ 134 (330)
..+.+|+=+|||. ||+.+.++ ..|+++|+++|.+++=++.
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL 208 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 3445999999996 99887765 4799999999999986644
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=76.48 E-value=1.5 Score=41.71 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
.++|.++||+|||.-+--++.+..-+++|+++||.+.-+
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~ 92 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR 92 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH
Confidence 568999999999998877777766688999999988644
No 244
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=75.88 E-value=3.6 Score=40.73 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
++..|++||||-|-=-+---++|+..++++|+.+-.++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHH
Confidence 6788999999999666666678999999999988777553
No 245
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=75.02 E-value=4.2 Score=40.72 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=36.3
Q ss_pred CCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.-+|||-=||||+=||-.++- ++.+|++-|+|+++++. ...|+.+|-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~-i~~N~~~N~~ 99 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVEL-IKRNLELNGL 99 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHH-HHHHHHHCT-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHH-HHHhHhhccc
Confidence 458999999999999987764 77899999999999865 4566666643
No 246
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.13 E-value=7 Score=39.23 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=30.3
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHc--CCCCcEEEEEec
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCL--RPPYGVVYLATK 288 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L--~~p~Gv~~lA~k 288 (330)
..-|++|+++|=+-....-.+|...|.+++ ..|+|.+.|+.+
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 356999999998887777776666666543 247888887754
No 247
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=72.95 E-value=8.9 Score=37.31 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.8
Q ss_pred CCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHH
Q 020125 67 PDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIR 133 (330)
Q Consensus 67 y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~ 133 (330)
|+-|+.+=+++..-+.+|.+. -++.||.|+-+| ---|.||++++-| +++|...|+++-.+.
T Consensus 128 yDQgfvTpEttv~Rv~lm~~R-----GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~ 189 (354)
T COG1568 128 YDQGFVTPETTVSRVALMYSR-----GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK 189 (354)
T ss_pred cccccccccceeeeeeeeccc-----cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH
Confidence 444444444444444444322 367899999999 7789999988755 689999999998773
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=72.86 E-value=46 Score=32.03 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCEEEEEcccC-CHHHHHHHHc-C-CCeEEEEeCChHHHHH
Q 020125 97 GKRVLELSCGY-GLPGIFACLK-G-AGTVHFQDLSAETIRC 134 (330)
Q Consensus 97 ~k~VLELGcGt-GL~gi~a~~~-g-a~~V~~tD~~~~vl~~ 134 (330)
.++|+=+|||. -+.+|..++. + ...|+..|++++.++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 36999999995 8888888753 3 2378999999998754
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.41 E-value=10 Score=35.46 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=36.7
Q ss_pred CCCEEEEEcccCCHHHHHHHHcC-CCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~g-a~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++.++.|+||=.|.+.+++.+.+ ++.+++.|.++..++.. +.|+..|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a-~~~v~~~ 63 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESA-IRNVKKN 63 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHH-HHHHHhc
Confidence 45669999999999999998754 67999999999988553 3444433
No 250
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.29 E-value=12 Score=32.90 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
...|++.|.+.. .-+|..|||.=||+|-.+++|.+.|. +.+++|++++..+.
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEI 228 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 477888777653 45789999999999999999999986 79999999987754
No 251
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=69.68 E-value=7.3 Score=40.66 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
...+.+|+=+|||. |+..+.+++ .|| +|++.|.+++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ 203 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQ 203 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 35789999999995 888887664 688 79999999987754
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=68.65 E-value=12 Score=36.70 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCCEEEEEcccCCHH-HHHHH-H--c-CCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLP-GIFAC-L--K-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~-gi~a~-~--~-ga~~V~~tD~~~~vl~~ 134 (330)
.+..++|||||.|-= .+++. . . ...+.+..|++.+.|+.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~ 119 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQR 119 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHH
Confidence 556899999999863 33322 1 1 13478999999999854
No 253
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=68.54 E-value=14 Score=31.60 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCeEEEEeCChH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAE 130 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~~ga~~V~~tD~~~~ 130 (330)
.++|+|+.+.. ...+|+|+|-|-=. ++..+...|. .|++||+++.
T Consensus 2 ~~~a~~ia~~~-------~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARLN-------NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHHS--------SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred chHHHHHHHhC-------CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 36888888652 34499999999643 4455566785 8999999885
No 254
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=68.30 E-value=9.9 Score=31.77 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeC
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 127 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~ 127 (330)
+.+|.||...-++....-+-..-.|||||-||+--.+..-|- .=.+.|.
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 566777764332211112234678999999998877777665 2344444
No 255
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=67.19 E-value=92 Score=30.54 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCEEEEEcccCCHHHHHHHH---cCCCeEEEEeCChHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETI 132 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~---~ga~~V~~tD~~~~vl 132 (330)
+.-+|||+-||+|--=+=+.. ..+..|.+.||++.-+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv 174 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV 174 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH
Confidence 344999999999965333322 2246899999999644
No 256
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=66.49 E-value=26 Score=35.03 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
.+.+..++++|||.|-+..+.+..+...+++.|+++.-+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~ 146 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEA 146 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHH
Confidence 456668999999999999888877777899999998765
No 257
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.05 E-value=31 Score=35.79 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=33.1
Q ss_pred CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 98 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
-++|.+|||---...-.-+.|-..|+.+|+++-+++..
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m 87 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAM 87 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHH
Confidence 49999999988777777788999999999999888654
No 258
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=62.69 E-value=17 Score=33.79 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=31.4
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH---------cCCCeEEEEeCChHHH
Q 020125 80 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL---------KGAGTVHFQDLSAETI 132 (330)
Q Consensus 80 La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~---------~ga~~V~~tD~~~~vl 132 (330)
+|.|+.+..+.....-..-+|+|+|+|.|.+..-... ...-++++.+.++..-
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 5666666543221112235999999999987655432 1234899999998754
No 259
>PRK11524 putative methyltransferase; Provisional
Probab=62.53 E-value=28 Score=33.07 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
+.|.+.|... ...+|..|||-=||+|-.+++|.+.|. +.++.|++++-.+.
T Consensus 195 ~~L~erlI~~-----~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~ 245 (284)
T PRK11524 195 EALLKRIILA-----SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKM 245 (284)
T ss_pred HHHHHHHHHH-----hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHH
Confidence 5666666544 357899999999999999999999986 89999999997755
No 260
>KOG2730 consensus Methylase [General function prediction only]
Probab=61.51 E-value=11 Score=35.65 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=55.9
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHHHhhhhhc
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 152 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~~~~~~~~ 152 (330)
-|=.-.-.|.+++.... ..+.-..|+|-=||.|--.|-.++.+. .|+..|+++.=+.+ + ++|++--
T Consensus 74 fsvTpe~ia~~iA~~v~---~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~-A----khNaeiY----- 139 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVV---ACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIAC-A----RHNAEVY----- 139 (263)
T ss_pred EEeccHHHHHHHHHHHH---HhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHH-H----hccceee-----
Confidence 34444666777765542 122456788988998887887777777 89999999987654 2 3443311
Q ss_pred cCCCCCCCCcccCCCCceeeeecccCCCc
Q 020125 153 RQPESSLTPSRQTLAPSVHFYAGDWEELP 181 (330)
Q Consensus 153 ~~~~s~~~~~~~~l~~~v~~~~gdW~~~~ 181 (330)
.+..+|.|.+|||-.+-
T Consensus 140 ------------GI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 140 ------------GVPDRITFICGDFLDLA 156 (263)
T ss_pred ------------cCCceeEEEechHHHHH
Confidence 13458999999997643
No 261
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=61.41 E-value=15 Score=34.99 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc------CCCeEEEEeCCh
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLK------GAGTVHFQDLSA 129 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~------ga~~V~~tD~~~ 129 (330)
..-++..++|+|||.|.+|-+.+.. ....+++.|-..
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4456779999999999999886642 245788888855
No 262
>PRK13699 putative methylase; Provisional
Probab=57.41 E-value=42 Score=31.04 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..|.+.+.+. ..-+|..|||-=||+|-.+++|.+.|. +.++.|++++..+.
T Consensus 150 ~~l~~~~i~~-----~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~ 200 (227)
T PRK13699 150 VTSLQPLIES-----FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRA 200 (227)
T ss_pred HHHHHHHHHH-----hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHH
Confidence 5566665543 244788999999999999999999886 79999999987654
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=56.90 E-value=26 Score=32.38 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH----c-CCCeEEEEeCChHHHHHhhHHHHHH
Q 020125 68 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL----K-GAGTVHFQDLSAETIRCTTVPNVLA 142 (330)
Q Consensus 68 ~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~----~-ga~~V~~tD~~~~vl~~~t~pNv~~ 142 (330)
|-|..++....+++.+-.=- +.++-+.|+|+|.-.|-..++.|. . +..+|++.|++-.-.
T Consensus 9 w~G~pi~q~P~Dm~~~qeli-----~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---------- 73 (206)
T PF04989_consen 9 WLGRPIIQYPQDMVAYQELI-----WELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---------- 73 (206)
T ss_dssp ETTEEESS-HHHHHHHHHHH-----HHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----------
T ss_pred CCCeehhcCHHHHHHHHHHH-----HHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh----------
Confidence 44677888888888776422 457889999999999877776542 2 456999999965432
Q ss_pred HHHHhhhhhccCCCCCCCCcccCCCCceeeeecccCCCcc
Q 020125 143 NLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT 182 (330)
Q Consensus 143 N~~~~~~~~~~~~~s~~~~~~~~l~~~v~~~~gdW~~~~~ 182 (330)
|-...+ .+.+.+++++..||......
T Consensus 74 ~~~a~e--------------~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 74 NRKAIE--------------SHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp -S-GGG--------------G----TTEEEEES-SSSTHH
T ss_pred chHHHh--------------hccccCceEEEECCCCCHHH
Confidence 111000 01245789999999877554
No 264
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.20 E-value=16 Score=36.21 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=27.2
Q ss_pred CCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 96 RGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 96 ~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
+|..|--+|+|. ||.-+.-| .+||+++++.|+|++=.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf 230 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF 230 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH
Confidence 567777777774 55444433 47999999999999855
No 265
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=56.15 E-value=1.7e+02 Score=29.42 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=40.9
Q ss_pred CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 70 FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 70 g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.++.|+++ ..|.+++.+.. ..+ .||=++=.-|-++..++..+.. .. .+..+-+..+..|+.+|
T Consensus 24 ~l~awdaade~ll~~~~~~~------~~~-~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n 87 (378)
T PRK15001 24 PLQAWEAADEYLLQQLDDTE------IRG-PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLN 87 (378)
T ss_pred cccccccHHHHHHHHHhhcc------cCC-CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHc
Confidence 37899998 55556665421 223 7899999999888887755542 22 33445566666777766
No 266
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.11 E-value=29 Score=32.69 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCChHHHHH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~~vl~~ 134 (330)
.+-++++...+ ..+..|++||+|.=||...+..|.. --.+|+..|+|++.++.
T Consensus 59 ~d~g~fl~~li----~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~ 113 (237)
T KOG1663|consen 59 PDKGQFLQMLI----RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI 113 (237)
T ss_pred hHHHHHHHHHH----HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH
Confidence 45555665544 3578999999998888877776542 23489999999998755
No 267
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=51.35 E-value=27 Score=34.85 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
-+|.+|.-+|||. ||..|..+ ..||.+|++.|++++=++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~ 224 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE 224 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence 4678888999985 88888855 479999999999998664
No 268
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=51.07 E-value=23 Score=33.31 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=28.4
Q ss_pred CEEEEEcccCCH-HHHHHHHcC--CCeEEEEeCChHHHHHhhHHHH
Q 020125 98 KRVLELSCGYGL-PGIFACLKG--AGTVHFQDLSAETIRCTTVPNV 140 (330)
Q Consensus 98 k~VLELGcGtGL-~gi~a~~~g--a~~V~~tD~~~~vl~~~t~pNv 140 (330)
-.+.|==||.|- +.+.....+ .+.|+++|+|+++|+.. ..|+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA-~kNL 97 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELA-RKNL 97 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHH-HHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHH-HHhh
Confidence 378899999984 455554443 35899999999999763 3444
No 269
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=50.49 E-value=16 Score=32.89 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCccEEEEeccccCccc----HHHHHHHHHHHcCCCCcEEEEEecccccccc
Q 020125 247 EGGYDVILLTEIPYSVTS----LKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 295 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~----~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~ 295 (330)
..+||+||-+|+-++.-. -+.-++.|++..+. +|-.+|+.....||.|
T Consensus 65 L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~-GGgLlmigG~~sfg~g 116 (177)
T PF07090_consen 65 LNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRD-GGGLLMIGGPRSFGPG 116 (177)
T ss_dssp HCT-SEEEEES--HHHHHT----HHHHHHHHHHHHT-T-EEEEE-STTSSGTT
T ss_pred HhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHh-CCEEEEEeChhhcCCC
Confidence 479999999998775442 45667777877764 5666666666677644
No 270
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.17 E-value=25 Score=33.89 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=27.7
Q ss_pred CCCCEEEEEcccC-CHHHHHHHH--cCCCeEEEEeCChHHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFACL--KGAGTVHFQDLSAETIR 133 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~~--~ga~~V~~tD~~~~vl~ 133 (330)
..|.+||=+|||. |+..+.+++ .|+.+|+++|.+++=++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~ 203 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH
Confidence 4688999999874 555544443 46678999999876443
No 271
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.16 E-value=55 Score=31.99 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHHHH
Q 020125 92 QLSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 92 ~~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl~~ 134 (330)
..+++|+.||==|.|.|+--..| ++.|+ ++++.|+|++..+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEE 77 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHH
Confidence 45789999999999999866554 56787 89999999987654
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=48.44 E-value=30 Score=33.13 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=27.0
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
.+|++||=.|||. |+..+.++ ..|+++|+++|.+++-++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~ 208 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS 208 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 4688999898752 44443333 358878999999887553
No 273
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=47.73 E-value=8.3 Score=39.45 Aligned_cols=49 Identities=29% Similarity=0.272 Sum_probs=40.7
Q ss_pred CCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
.-.|..|-|+=||.|-..+-|++.| ..|++-|.|+++++. +..|+..|-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~-Lk~ni~lNk 295 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKW-LKANIKLNK 295 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHH-HHHhccccc
Confidence 3357788899999999999999998 599999999999976 356666664
No 274
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=46.18 E-value=35 Score=33.48 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
..+|.+||.+|||. |...+.+++ .|+.+|+++|.+++.++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~ 224 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEM 224 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 45788999999875 555555444 566679999999887644
No 275
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=45.81 E-value=22 Score=34.33 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.++..+||=+|||. |. ..-.+++.|.+++++.|.+.- ...|+.+|..
T Consensus 16 kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v-----e~snL~rqf~ 64 (286)
T cd01491 16 KLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC-----SWSDLSSQFY 64 (286)
T ss_pred HHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc-----chhhcccCcc
Confidence 45788999999983 22 223356789999999999863 3477777754
No 276
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=45.75 E-value=30 Score=32.93 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=26.6
Q ss_pred CCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 97 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
..+|+|||||.=-+.+..... ....+++.|+|..+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~ 144 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF 144 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH
Confidence 569999999987666654432 12389999999998865
No 277
>PRK08328 hypothetical protein; Provisional
Probab=45.73 E-value=18 Score=33.49 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
..+++++|+=+|||. |- +...+++.|.+++++.|.+.-- ..|+.++.
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve-----~sNL~Rq~ 71 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE-----LSNLNRQI 71 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC-----hhhhcccc
Confidence 356789999999993 32 3333567899999999987643 36776654
No 278
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=45.65 E-value=64 Score=28.52 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHhhhhhcCCCCCCCCEEEEEccc-C-CH-HHHHHHHcCCCeEEEEeCCh
Q 020125 73 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-Y-GL-PGIFACLKGAGTVHFQDLSA 129 (330)
Q Consensus 73 ~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcG-t-GL-~gi~a~~~ga~~V~~tD~~~ 129 (330)
++.+++.+++.+. ..+.|++||=+|+| + |. ..-.+...|+ +|++++-+.
T Consensus 27 ~~~a~v~l~~~~~-------~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~ 78 (168)
T cd01080 27 TPAGILELLKRYG-------IDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT 78 (168)
T ss_pred hHHHHHHHHHHcC-------CCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc
Confidence 6666666666553 35799999999999 3 65 3333445677 788888764
No 279
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.30 E-value=22 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=32.5
Q ss_pred CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 98 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 98 k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.+.+|||+|-|.+-+.+++.|+..-++.++|+-.+..
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVay 110 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAY 110 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHH
Confidence 3688999999999999999998889999999986643
No 280
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=45.29 E-value=1.3e+02 Score=28.77 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=41.8
Q ss_pred CCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHH
Q 020125 69 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 69 gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~ 134 (330)
|-+.+++.+=.++..+.. .-.|.+|||+-|+.|-=+..++. .+...|++.|++..=+..
T Consensus 65 G~~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~ 125 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKR 125 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHH
T ss_pred CcEEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHH
Confidence 455678777666555542 23688899999999976555443 335699999999987754
No 281
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=44.91 E-value=48 Score=30.96 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.2
Q ss_pred EEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 99 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 99 ~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
+|+||=||.|..++.+...|...|.+.|+++... ....+|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-----~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-----ETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-----HHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-----Hhhhhcc
Confidence 6899999999999999999988999999999976 3455564
No 282
>PLN02740 Alcohol dehydrogenase-like
Probab=44.38 E-value=36 Score=33.31 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
.-+|.+||=+|+|. |+..+.++ ..|+++|+++|.+++-++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~ 237 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFE 237 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence 45788999998753 44444334 367778999999887554
No 283
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=43.89 E-value=75 Score=24.30 Aligned_cols=49 Identities=29% Similarity=0.264 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHH--HHcCCCeEEEEeC
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFA--CLKGAGTVHFQDL 127 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a--~~~ga~~V~~tD~ 127 (330)
...++|....+.....+++++++-+|+|.---+++. ...+..+|++.|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 5 GAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 345556554433345689999999999753223332 2344668988887
No 284
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=43.87 E-value=36 Score=35.54 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=31.0
Q ss_pred CcccchhHHHHHHHHhhhhhcCCCCCCC---CEEEEEcccCCHHHHHHHHcCCC
Q 020125 70 FLKCWESSIDLVNVLKHEIRDGQLSFRG---KRVLELSCGYGLPGIFACLKGAG 120 (330)
Q Consensus 70 g~k~W~ss~~La~~l~~~~~~~~~~~~~---k~VLELGcGtGL~gi~a~~~ga~ 120 (330)
|-.-..++..-.+.|.+.+. ....+ ..+||+|||+|-.|-++...+.-
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~---~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~ 141 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIP---LIKWGGGIRTALDVGCGVASFGAYLLERNVT 141 (506)
T ss_pred CccccCCHHHHHHHHHHHhh---ccccCCceEEEEeccceeehhHHHHhhCCce
Confidence 33334466666666665542 11233 37999999999988888887763
No 285
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=41.93 E-value=23 Score=32.02 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
..+++++||=+|||. | .....+++.|.+++++.|.+.-- ..|+.++.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve-----~sNL~Rq~ 65 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD-----LSNLQRQI 65 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc-----ccchhhhh
Confidence 356889999999993 2 23344567899999999997632 36777664
No 286
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=41.68 E-value=45 Score=30.96 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=26.0
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
.+|++||=+|+|. |+..+.++ ..|+++|+++|.+++-+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 4789999998863 44444333 36887799998877643
No 287
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=40.77 E-value=29 Score=28.88 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCCh
Q 020125 97 GKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 129 (330)
Q Consensus 97 ~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~ 129 (330)
.++|+=+|||. |. +...+++.|..++++.|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 57899999984 32 33445678999999999976
No 288
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=40.39 E-value=19 Score=34.41 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
..+++.+|+=+|||. | -+.-++++.|..++++.|.+.-.. .|+.+++
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~-----sNlnRQ~ 74 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV-----TNTNRQI 74 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc-----ccccccc
Confidence 356889999999993 3 334446678999999999987543 6666544
No 289
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=40.05 E-value=49 Score=32.16 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
.-.|.+||=.|||. |+..+.+++ .|+++|+++|.+++-++.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~ 225 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFEL 225 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 34688999998763 444444443 677789999998875543
No 290
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=39.89 E-value=32 Score=31.16 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCCh
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSA 129 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~ 129 (330)
..++.++|+-+|||. |. ....+++.|..++++.|.+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457889999999994 32 34446778999999999984
No 291
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=39.81 E-value=22 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=5.7
Q ss_pred EEEcccCCHHHHHHHH----cCCCeEEEEeCChH
Q 020125 101 LELSCGYGLPGIFACL----KGAGTVHFQDLSAE 130 (330)
Q Consensus 101 LELGcGtGL~gi~a~~----~ga~~V~~tD~~~~ 130 (330)
||+|+..|..++..++ .+..+++..|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 6999888888776553 22237999999985
No 292
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=39.68 E-value=30 Score=37.31 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChH
Q 020125 94 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAE 130 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~ 130 (330)
.+++.+||=+|||+ |- +...++..|.+++++.|.+.-
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 46788999999996 54 455577899999999998764
No 293
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=39.41 E-value=19 Score=36.29 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCEEEEEcccCCHHHHHHHH---------c---C----CCeEEEEeCChH
Q 020125 97 GKRVLELSCGYGLPGIFACL---------K---G----AGTVHFQDLSAE 130 (330)
Q Consensus 97 ~k~VLELGcGtGL~gi~a~~---------~---g----a~~V~~tD~~~~ 130 (330)
.-+|+|||||+|..++.+.. + + --+|++.|....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 45899999999988876531 1 1 147889998654
No 294
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=39.39 E-value=77 Score=29.22 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=38.0
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHH--HHcCCC--eEEEEeCChH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFA--CLKGAG--TVHFQDLSAE 130 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a--~~~ga~--~V~~tD~~~~ 130 (330)
+++.++-++..... ....+++++||=+|+|..-.+++. ...|++ +|++.|.+..
T Consensus 5 ~~v~lAG~~~al~~-~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 5 AIVTLAGLLNALKL-VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred HHHHHHHHHHHHHH-hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 45666666653321 224689999999999976666653 456887 9999999853
No 295
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=38.84 E-value=45 Score=31.57 Aligned_cols=38 Identities=11% Similarity=-0.053 Sum_probs=26.2
Q ss_pred CCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 95 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 95 ~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
.++++||=+|||. |+..+.++ ..|++.|+++|.+++-+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 3678899888763 55554444 36887788888877654
No 296
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.40 E-value=68 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCCCCEEEEEcccC-CHHHHH-HHHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~-a~~~ga~~V~~tD~~~~vl 132 (330)
.+++++||=+|+|- |-.-+. +...|+++|+++.-+.+-.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra 49 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA 49 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 67999999999984 322222 3457999999999887643
No 297
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=1.4e+02 Score=30.00 Aligned_cols=57 Identities=12% Similarity=-0.089 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHH---------cCCCeEEEEeCChHHHHH
Q 020125 77 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL---------KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 77 s~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~---------~ga~~V~~tD~~~~vl~~ 134 (330)
+..+|.|+.+..... .....-.++|+|+|.|...--..+ ..+.++.+.+.+++..+.
T Consensus 59 Gella~~~~~~wq~~-g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 59 GELLAEQFLQLWQEL-GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred HHHHHHHHHHHHHHh-cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 356777777654211 122345899999999976633221 246689999999986643
No 298
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=37.40 E-value=26 Score=32.64 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 94 ~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.+++++|+=+|||. | -..-.+++.|..++++.|.+.-- ..|+.+++.
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~-----~sNlnRq~~ 56 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC-----VSNLNRQIH 56 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC-----chhhcchhC
Confidence 46788999999993 3 23344667899999999998743 367766653
No 299
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=37.22 E-value=70 Score=31.77 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcccCCHHHHH--HHH-cCCCeEEEEeCChHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIF--ACL-KGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~--a~~-~ga~~V~~tD~~~~vl~~ 134 (330)
.-+|++|+=.|+| |+-.++ .++ .|| +|++.|.+++-++.
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e~ 205 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLEL 205 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHHH
Confidence 4579999999999 665444 444 685 99999999986643
No 300
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=37.14 E-value=82 Score=32.07 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
.+.|-+|.-+|+ .+.+.. ...+.|++|+=+|+|. |+..+..+ ..|+ +|+++|.++.-+
T Consensus 179 dn~~g~g~s~~~-------~i~r~t---~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~ 238 (413)
T cd00401 179 DNLYGCRESLID-------GIKRAT---DVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICA 238 (413)
T ss_pred cccchhchhhHH-------HHHHhc---CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhH
Confidence 445655655553 333321 2467899999999995 65544444 4688 799999988644
No 301
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.19 E-value=63 Score=31.25 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=29.6
Q ss_pred EEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHH
Q 020125 100 VLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 100 VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~ 133 (330)
|+||=||.|..++.+-.+|..-|.+.|+++.+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ 34 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQK 34 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHH
Confidence 6899999999998888889877788999998763
No 302
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=35.86 E-value=3.2e+02 Score=26.39 Aligned_cols=55 Identities=13% Similarity=0.300 Sum_probs=37.2
Q ss_pred eccccCc-ccHHHHHHHHHHHcCC-CCcEEEE--EeccccccccccHHHHHHhhhhcC---ceeEEE
Q 020125 256 TEIPYSV-TSLKKLYLLIKKCLRP-PYGVVYL--ATKKNYVGFNNAARHLRSLVDEEG---IFGAHL 315 (330)
Q Consensus 256 sD~iY~~-~~~~~L~~~i~~~L~~-p~Gv~~l--A~k~~yfGv~gg~~~F~~~vee~G---~f~~~~ 315 (330)
-|-.|.. ..|+.+++.|++.+++ ++|+.-| -.|.+ .-++.|...+|.-| ++.+++
T Consensus 162 IDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r-----~~~~~f~~~L~~~~i~kiL~iEL 223 (279)
T COG2961 162 IDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDR-----RQIRRFLRALEALGIRKILQIEL 223 (279)
T ss_pred eCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecch-----HHHHHHHHHHhhcCccceeeeEE
Confidence 3556655 5588899999987764 6776433 34443 26888988888866 466665
No 303
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.18 E-value=76 Score=27.03 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCeEEEEeCChH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAE 130 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~~ga~~V~~tD~~~~ 130 (330)
.+++++.... -+| +|.|+|.|-=+ ++-.+++.|. .|++||+++.
T Consensus 3 e~a~~iAre~------~~g-kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 3 EVAEYIAREN------ARG-KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred cHHHHHHHHh------cCC-cEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 3567776542 234 89999998532 3333556775 8999999885
No 304
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=34.33 E-value=3.3e+02 Score=24.04 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=29.9
Q ss_pred CCCccEEEEeccccCcccHHHHHHHHHHHcCCCCcEEEEEeccc
Q 020125 247 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 290 (330)
Q Consensus 247 ~~~fDvILasD~iY~~~~~~~L~~~i~~~L~~p~Gv~~lA~k~~ 290 (330)
.++||+||+===-.+.+...+...+++.+++ +++.+++.+...
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k-~~~kii~~Tg~~ 126 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLK-PGGKIILCTGEE 126 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhC-ccceEEEecHHH
Confidence 4688887763333445667788999997775 678888877543
No 305
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=33.91 E-value=59 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
.-.++||.|||-|.++=-....-+.+|-+.|..+..++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~ 93 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQ 93 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHH
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHH
Confidence 456999999999999876655557899999999987743
No 306
>PRK07411 hypothetical protein; Validated
Probab=33.85 E-value=22 Score=35.69 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=35.5
Q ss_pred CCCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
..++..+||=+|||. | -+...+++.|..++++.|.+.-- ..|+.+|..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve-----~sNL~RQ~l 83 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVD-----SSNLQRQVI 83 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEec-----ccccCcCcc
Confidence 356788999999993 3 24444677899999999997643 377777654
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=33.53 E-value=73 Score=30.70 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcccC-CHHHHHHHH-cCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~~-~ga~~V~~tD~~~~vl 132 (330)
.-.|.+||=.|||. |+..+.+++ .|+++|+++|.+++-+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~ 214 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKL 214 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 34688999998753 444333343 6777799999888644
No 308
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.25 E-value=40 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
..++.++|+=+|||. |. +...+++.|.+++++.|.+.- ...|+.++..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v-----e~sNL~Rq~l 77 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV-----SLSNLQRQVL 77 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE-----Ccchhhhhhc
Confidence 356889999999973 32 233356789999999999853 3477777654
No 309
>PRK08223 hypothetical protein; Validated
Probab=32.95 E-value=31 Score=33.42 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=36.8
Q ss_pred CCCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 92 QLSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 92 ~~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
+..++..+||=+|||. |- +...+++.|..++++.|.+.-- ..|+.++..
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve-----~SNLnRQ~l 72 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFE-----LRNFNRQAG 72 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcc-----hhccccccC
Confidence 3457899999999993 43 3455778999999999998743 377777653
No 310
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=32.06 E-value=1.3e+02 Score=28.51 Aligned_cols=41 Identities=24% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCCCCCEEEEEcccCCHH-HHH--HHHcCCCeEEEEeCChHHHHH
Q 020125 93 LSFRGKRVLELSCGYGLP-GIF--ACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~-gi~--a~~~ga~~V~~tD~~~~vl~~ 134 (330)
..+.||.+|-=|.+.|+- +++ +++.|+ +|+.++.+++-++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~ 47 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEE 47 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 568999999999999985 333 567888 89999999987644
No 311
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.00 E-value=76 Score=30.77 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
...|.+||=.|+|. |+..+.++ ..|+++|+++|.+++-++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~ 230 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA 230 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 34688888898762 33333333 368878999999887543
No 312
>PRK06172 short chain dehydrogenase; Provisional
Probab=31.00 E-value=2.3e+02 Score=25.26 Aligned_cols=38 Identities=29% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
.+++|+||=.|++.|+-.-.+ +..|+ +|++++.+++-+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~ 44 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGG 44 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 467899999998777655443 34676 799999987654
No 313
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=30.71 E-value=1.7e+02 Score=28.68 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCCHHHHHHHHc-CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a~~~-ga~~V~~tD~~~~vl~~ 134 (330)
-+|..++|--+|.|--+.+++.. +..+|++.|.++++++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ 59 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAF 59 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 36779999999999888877653 33689999999999865
No 314
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=30.35 E-value=56 Score=30.44 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
.+++.+|+=+|||. |- ....+++.|..++++.|.+.-- ..|+.++.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve-----~sNL~RQ~ 68 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS-----LSNLQRQV 68 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc-----ccCcccce
Confidence 46788999999993 33 3344667899999999998743 36766654
No 315
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=30.29 E-value=2.7e+02 Score=24.89 Aligned_cols=39 Identities=28% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
..+++|+||=.|++.|+-.-++ +..|+ +|++++.+++.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~ 48 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATL 48 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHH
Confidence 4578999999998777654333 34677 899999987655
No 316
>PLN02827 Alcohol dehydrogenase-like
Probab=30.24 E-value=87 Score=30.69 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
..+|.+||=.|+|. |+..+.++ ..|++.|+++|.+++-+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~ 231 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKA 231 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 45689999998753 44333333 36877799999877644
No 317
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=1.4e+02 Score=28.00 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCCC-cccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCH-HHHHHHHcCCCeEEEEeCChHHHHHh
Q 020125 67 PDGF-LKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETIRCT 135 (330)
Q Consensus 67 y~gg-~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL-~gi~a~~~ga~~V~~tD~~~~vl~~~ 135 (330)
|+|+ .+.|+.- =-||..+..-.+ ....-+|.+||=||+.+|- +|=.+=..|...|.+.++++.+.+.+
T Consensus 46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL 116 (231)
T COG1889 46 VEGEEYREWNPRRSKLAAAILKGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL 116 (231)
T ss_pred ecCcceeeeCcchhHHHHHHHcCcc-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH
Confidence 4444 6788865 335555543321 1235578999999999986 33333345566799999999998663
No 318
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=30.07 E-value=3.2e+02 Score=23.67 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHcCCCCcEEEEEecccccccccc------HHHHHHhhhhcC
Q 020125 263 TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNA------ARHLRSLVDEEG 309 (330)
Q Consensus 263 ~~~~~L~~~i~~~L~~p~Gv~~lA~k~~yfGv~gg------~~~F~~~vee~G 309 (330)
..+.+|-+.+. +|+ ++|++.|+. |.|=.|| +.+|.+-+..+.
T Consensus 70 TTl~Al~~al~-lL~-~gG~i~iv~---Y~GH~gG~eE~~av~~~~~~L~~~~ 117 (140)
T PF06962_consen 70 TTLKALEAALE-LLK-PGGIITIVV---YPGHPGGKEESEAVEEFLASLDQKE 117 (140)
T ss_dssp HHHHHHHHHHH-HEE-EEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTT
T ss_pred HHHHHHHHHHH-hhc-cCCEEEEEE---eCCCCCCHHHHHHHHHHHHhCCcce
Confidence 34566666555 575 889877654 3344554 455666665554
No 319
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=29.66 E-value=87 Score=31.02 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCCCEEEEEc-cc-CCHHHHHHHHc---CCCeEEEEeCChHHHHH
Q 020125 95 FRGKRVLELS-CG-YGLPGIFACLK---GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 95 ~~~k~VLELG-cG-tGL~gi~a~~~---ga~~V~~tD~~~~vl~~ 134 (330)
-.|.+||=+| +| .|+..+.+++. |+.+|+++|.+++-++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~ 218 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLAR 218 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHH
Confidence 4578898887 45 36666655554 55689999999876543
No 320
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=29.58 E-value=42 Score=33.75 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=54.9
Q ss_pred CCCCCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH--hhHH
Q 020125 61 EMISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC--TTVP 138 (330)
Q Consensus 61 dl~~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~--~t~p 138 (330)
+|+.-.|-|.- .-++.+.+... +. ...-.|+.|.|==.|||-.-+.++..|| .|+++|+|-.+++. =-..
T Consensus 180 ~LK~R~yiGnT-SmDAeLSli~A--N~----Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~ 251 (421)
T KOG2671|consen 180 DLKKRCYIGNT-SMDAELSLIMA--NQ----AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDE 251 (421)
T ss_pred ccccccccCCc-ccchhHHHHHh--hh----hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCc
Confidence 34555565443 56665444321 11 1245789999988999988888999998 89999999998861 1236
Q ss_pred HHHHHHHHh
Q 020125 139 NVLANLEQA 147 (330)
Q Consensus 139 Nv~~N~~~~ 147 (330)
||.+|..+.
T Consensus 252 si~aNFkQY 260 (421)
T KOG2671|consen 252 SIKANFKQY 260 (421)
T ss_pred chhHhHHHh
Confidence 899998765
No 321
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=29.33 E-value=92 Score=28.36 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHHHH
Q 020125 79 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 79 ~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl~~ 134 (330)
-|+.+|.+.+. ....++++|.=||+|.+++.+.. ...+|+.-|+++.++..
T Consensus 7 ~l~~~I~~~ip----~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~ 57 (260)
T PF02086_consen 7 KLAKWIIELIP----KNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINF 57 (260)
T ss_dssp GGHHHHHHHS-----S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHH
T ss_pred HHHHHHHHHcC----CCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHH
Confidence 46777776642 11688999999999988877765 35689999999997744
No 322
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=29.06 E-value=1.4e+02 Score=26.58 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--HcCCCeEEEEeCChH
Q 020125 78 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAE 130 (330)
Q Consensus 78 ~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~--~~ga~~V~~tD~~~~ 130 (330)
..+.+.|.+.. ...+.||+|+-+|.|.=--|++.. ..|+ +|+.+|.+|.
T Consensus 7 ~S~~d~i~r~t---~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 7 QSLVDGIMRAT---NLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHHH----S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred hhHHHHHHhcC---ceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 34444444332 357899999999988533344432 3676 8999999994
No 323
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=28.96 E-value=59 Score=32.69 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEEEcccC-CHHHHH-HHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 91 GQLSFRGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 91 ~~~~~~~k~VLELGcGt-GL~gi~-a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
++..+++..||-+|||- |.|.+. ++.+|+.++=+.|++.-- +.|+.+-..
T Consensus 60 GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe-----~sNlhRQVl 111 (427)
T KOG2017|consen 60 GQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVE-----LSNLHRQVL 111 (427)
T ss_pred cccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceee-----hhhHHHHHh
Confidence 35567888999999994 877754 677899999999997632 366666554
No 324
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=28.94 E-value=2.3e+02 Score=26.70 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=39.2
Q ss_pred CcccchhH-HHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHH-HHHHHHcC-CCeEEEEeCChHHHHHh
Q 020125 70 FLKCWESS-IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLP-GIFACLKG-AGTVHFQDLSAETIRCT 135 (330)
Q Consensus 70 g~k~W~ss-~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~-gi~a~~~g-a~~V~~tD~~~~vl~~~ 135 (330)
.+++|+-- =-||..|..-.+ .....+|.+||=||+.+|.. |=.+=..| -..|++.++++.+.+.+
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred ceeecCchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH
Confidence 57799865 345555544321 12456789999999999963 33332334 44799999999988654
No 325
>PRK06153 hypothetical protein; Provisional
Probab=28.92 E-value=60 Score=32.88 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 94 ~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
.+++++|+=+|||. | .+...+++.|.+++++.|.+.-- ..|+.+-
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve-----~SNLnRQ 219 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFL-----QHNAFRS 219 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEec-----ccccccc
Confidence 46789999999993 4 34455778999999999998632 2565544
No 326
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.86 E-value=2.2e+02 Score=25.54 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCCCCCEEEEEcccCCHHHHHHH----HcCCCeEEEEeCChHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~----~~ga~~V~~tD~~~~vl~ 133 (330)
..++||+|+=.|.| -.|..++ ..|+ +|+++|.+++.++
T Consensus 24 ~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~ 65 (200)
T cd01075 24 DSLEGKTVAVQGLG--KVGYKLAEHLLEEGA-KLIVADINEEAVA 65 (200)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 56899999999998 3444443 4687 8999999987653
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=28.83 E-value=1e+02 Score=29.19 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
...|.+||=+|+|. |+..+.++ ..|+++|+++|.+++-+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~ 201 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL 201 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 34688999998752 33333333 36886699999887644
No 328
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=27.90 E-value=34 Score=34.26 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.+++.+||=+|||. |. +...+++.|.+++++.|.+.-- ..|+.++..
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve-----~sNL~Rq~l 87 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVD-----ESNLQRQVI 87 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec-----Ccccccccc
Confidence 45788999999994 32 3344667899999999997632 377777664
No 329
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=27.30 E-value=1.1e+02 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCCCEEEEEcccCCHHHHHH---H-HcCCCeEEEEeCChHHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a---~-~~ga~~V~~tD~~~~vl~ 133 (330)
-.|.+||=+|+| -+|+++ + ..|+++|+++|.+++-++
T Consensus 185 ~~g~~VlV~G~G--~vG~~a~~~ak~~G~~~vi~~~~~~~~~~ 225 (368)
T cd08300 185 EPGSTVAVFGLG--AVGLAVIQGAKAAGASRIIGIDINPDKFE 225 (368)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 468899999875 444443 3 367768999999887553
No 330
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=27.19 E-value=45 Score=32.80 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 92 QLSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 92 ~~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
+..+++++||=+|||. |- +...+++.|..++++.|.+.-- ..|+.++.
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve-----~sNL~RQ~ 68 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE-----WSNLQRQQ 68 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc-----ccccCccc
Confidence 3467889999999994 32 3333567899999999998632 25665553
No 331
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=27.08 E-value=59 Score=36.88 Aligned_cols=46 Identities=20% Similarity=0.103 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcccCCHHH---HHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 94 SFRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~g---i~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
.++..+||=+|||. |-+ -.+++.|.+++++.|.+.- ...|+.+|..
T Consensus 21 kL~~s~VLIiG~gG-LG~EiaKnL~laGVg~iti~D~d~v-----~~sdL~rQf~ 69 (1008)
T TIGR01408 21 KMAKSNVLISGMGG-LGLEIAKNLVLAGVKSVTLHDTEKC-----QAWDLSSNFF 69 (1008)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcCCCeEEEEeCCee-----cHhhCCCcee
Confidence 45678999999983 322 2245789999999999874 3467776654
No 332
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=27.05 E-value=3e+02 Score=24.93 Aligned_cols=39 Identities=33% Similarity=0.536 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
..+++|++|=.|++.|+-.-.+ +..|+ +|++.+-+++-+
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~ 47 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELV 47 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHH
Confidence 4578999999999987754332 34677 688888877654
No 333
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=26.57 E-value=1.7e+02 Score=29.53 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 72 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 72 k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
.+||-..+.-+.|. .-++.+||-+.+| |.-.+..+..++++|++.|+|+.=+
T Consensus 19 ~~WEDp~vD~~aL~--------i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 19 QCWEDPRVDMEALN--------IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred cccCCcHHHHHHhC--------CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHH
Confidence 38999888888774 3367889988765 3333444567888999999999643
No 334
>PRK05866 short chain dehydrogenase; Provisional
Probab=26.50 E-value=3.5e+02 Score=25.32 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl~ 133 (330)
..+.+++||=.|++.|+-.-++ +..|+ +|++++.+.+-++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~ 78 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLD 78 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 4578899999999877644332 34576 8999999876553
No 335
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.27 E-value=3.2e+02 Score=23.97 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=27.0
Q ss_pred CCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
+++++||=.|++.|+-.-++ +..|+ +|++++-+++-+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~ 42 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKL 42 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 46899999999866544443 24577 899999987654
No 336
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=26.13 E-value=75 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
..+++++|+=+|||. | -....+++.|.+++++.|.+.- ...|+.++..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v-----e~sNL~Rq~l 66 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV-----ELSNLQRQIL 66 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE-----cCcccccccc
Confidence 356789999999993 3 2333456789999999999863 3377776653
No 337
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=26.05 E-value=43 Score=33.37 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
..+++.+||=+|||. |. +...++..|.+++++.|.+.-- ..|+.++.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve-----~sNL~RQ~ 85 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVD-----VSNIHRQI 85 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc-----cccccccc
Confidence 457889999999993 32 3334567899999999998632 36777664
No 338
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=25.82 E-value=1.4e+02 Score=28.41 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcccCCHH-HHH--HHHcCCCeEEEEeCCh
Q 020125 94 SFRGKRVLELSCGYGLP-GIF--ACLKGAGTVHFQDLSA 129 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~-gi~--a~~~ga~~V~~tD~~~ 129 (330)
.+++++||=+|+| |.. +++ ++..|+++|++.+.+.
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999999998 442 232 2357888899999986
No 339
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=25.36 E-value=3.6e+02 Score=23.73 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCCEEEEEcccCCHHHHHH----HHcCCCeEEEEeCChHHH
Q 020125 95 FRGKRVLELSCGYGLPGIFA----CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 95 ~~~k~VLELGcGtGL~gi~a----~~~ga~~V~~tD~~~~vl 132 (330)
..+++||=.|++.++ |..+ +..|+ +|++++-++.-+
T Consensus 4 ~~~~~ilItGasg~i-G~~l~~~l~~~g~-~V~~~~r~~~~~ 43 (251)
T PRK12826 4 LEGRVALVTGAARGI-GRAIAVRLAADGA-EVIVVDICGDDA 43 (251)
T ss_pred CCCCEEEEcCCCCcH-HHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 468899988876544 4443 34576 799999886543
No 340
>PRK08265 short chain dehydrogenase; Provisional
Probab=25.07 E-value=5.2e+02 Score=23.37 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCCCEEEEEcccCCHHHHH---HHHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~---a~~~ga~~V~~tD~~~~vl 132 (330)
.+++|+||=.|++.|+-.-. ++..|+ +|+++|.+++-+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~ 43 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNG 43 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 35789999999877654433 234687 899999887543
No 341
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.05 E-value=27 Score=36.39 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCCEEEEEcccCCHHHHHHHH--cCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 96 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 96 ~~k~VLELGcGtGL~gi~a~~--~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
++-+|||-=|+|||=+|--++ -|+.+|++-|.++.+++. ...|+.+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~-i~~Nv~~N 157 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTS-IQRNVELN 157 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHH-HHhhhhhc
Confidence 556899999999999988775 578899999999999965 46888888
No 342
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.78 E-value=1.3e+02 Score=30.65 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCCCCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChH
Q 020125 64 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAE 130 (330)
Q Consensus 64 ~~~y~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~ 130 (330)
.+.|-+|..+|++ +.+.. ...+.|++|+=+|+|. |..-...+ ..|+ +|+++|.++.
T Consensus 172 Dn~yg~g~s~~~~-------i~r~t---~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~ 229 (406)
T TIGR00936 172 DNRYGTGQSTIDG-------ILRAT---NLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI 229 (406)
T ss_pred hcccccchhHHHH-------HHHhc---CCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh
Confidence 4567666656643 22221 2357899999999995 54443333 3577 7999999885
No 343
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.42 E-value=88 Score=30.91 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
..+++++||=+|||. |- +...++..|.+++++.|.+.- ...|+.++..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~v-----e~sNL~Rq~l 73 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTV-----DLSNLHRQVI 73 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE-----cccccccCcc
Confidence 457889999999993 32 334467789999999999863 2367777654
No 344
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=24.39 E-value=4e+02 Score=23.85 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcccCCHHHHHHH----HcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFAC----LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a~----~~ga~~V~~tD~~~~vl 132 (330)
.+++|+||=.|+..|+ |...+ ..|+ +|++.+-+++-+
T Consensus 9 ~~~~k~ilItGa~g~I-G~~la~~l~~~G~-~V~~~~r~~~~~ 49 (259)
T PRK08213 9 DLSGKTALVTGGSRGL-GLQIAEALGEAGA-RVVLSARKAEEL 49 (259)
T ss_pred CcCCCEEEEECCCchH-HHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 4689999999965544 44433 3577 799999887544
No 345
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.34 E-value=88 Score=27.53 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=28.0
Q ss_pred EEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 99 RVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 99 ~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
+|+=+|||. |- ....+++.|..++++.|.+.-- ..|+.++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~-----~sNl~Rq~ 43 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE-----PSNLNRQQ 43 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc-----Ccchhccc
Confidence 478899984 32 3344567899999999998632 35666554
No 346
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=24.31 E-value=1.3e+02 Score=28.67 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
.-.|.+||=+|+|. |+..+.++ ..|++.|+++|.+++-++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~ 199 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLA 199 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence 34688999998753 43333333 468867899998887553
No 347
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=24.20 E-value=84 Score=28.68 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 143 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N 143 (330)
..++.++|+=+|||. |- ....+++.|..++++.|.+.-- ..|+.++
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve-----~sNL~Rq 71 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE-----PSNLNRQ 71 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec-----ccccccc
Confidence 457889999999994 32 3344567899999999998532 2565555
No 348
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=24.01 E-value=1.5e+02 Score=27.70 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=43.3
Q ss_pred CCCcccchhHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH----HcC-CCeEEEEeCChHH
Q 020125 68 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC----LKG-AGTVHFQDLSAET 131 (330)
Q Consensus 68 ~gg~k~W~ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~----~~g-a~~V~~tD~~~~v 131 (330)
|-|..+|.+-.+|..|=+=. +..+...|+|.|.-.|-..|+.| ..| ..+|+..|++-.-
T Consensus 46 wmG~p~~k~p~D~~~yQell-----w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~ 109 (237)
T COG3510 46 WMGIPCIKSPSDMWNYQELL-----WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKP 109 (237)
T ss_pred EecccccCCHHHHHHHHHHH-----HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCc
Confidence 34778999999998875422 56678899999999887777644 345 2379999987654
No 349
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.80 E-value=94 Score=31.74 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEccc-CCHHHHH--HHHcCCCeEEEEeCChH
Q 020125 93 LSFRGKRVLELSCG-YGLPGIF--ACLKGAGTVHFQDLSAE 130 (330)
Q Consensus 93 ~~~~~k~VLELGcG-tGL~gi~--a~~~ga~~V~~tD~~~~ 130 (330)
..+.+++|+=+|+| +|. +++ +...|+ .|++.|-+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~-a~a~~L~~~G~-~V~~~D~~~~ 49 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGR-GIAAMLSELGC-DVVVADDNET 49 (473)
T ss_pred ccccCCeEEEEccCHHHH-HHHHHHHHCCC-EEEEECCChH
Confidence 46789999999998 465 433 345787 8999997654
No 350
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.73 E-value=54 Score=32.50 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 94 SFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
.+++++|+=+|||. |- +...+++.|..++++.|.+.-- ..|+.++.
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~-----~sNl~Rq~ 179 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVD-----RSNLQRQI 179 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEec-----chhhcccc
Confidence 56889999999983 32 3344567899999999987632 36666654
No 351
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.36 E-value=63 Score=31.78 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 93 LSFRGKRVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 93 ~~~~~k~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
..++.++||=+|||. |- +...++..|..++++.|.+.- ...|+.++.
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V-----e~sNL~RQ~ 68 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV-----EWSNLQRQQ 68 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc-----CHHHcCccc
Confidence 456889999999993 32 333456789999999999653 236666554
No 352
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=23.36 E-value=1.7e+02 Score=24.16 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=17.0
Q ss_pred EEcccCCHHH--HHHH--Hc-CCCeEEEEeCChHHHHH
Q 020125 102 ELSCGYGLPG--IFAC--LK-GAGTVHFQDLSAETIRC 134 (330)
Q Consensus 102 ELGcGtGL~g--i~a~--~~-ga~~V~~tD~~~~vl~~ 134 (330)
|+||..|..+ +... .. ...+|++.|.++..++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~ 38 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEK 38 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 7899999333 3222 22 24589999999997754
No 353
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=1.8e+02 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHcC--CCeEEEEeCChHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAET 131 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~g--a~~V~~tD~~~~v 131 (330)
....|.+|||=|.|+|-.+-+.++.= -.+++--|+...-
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~R 142 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETR 142 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHH
Confidence 35689999999999999998887642 2479999997653
No 354
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=23.15 E-value=1.4e+02 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcccCCHHHHHH---H-HcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFA---C-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a---~-~~ga~~V~~tD~~~~vl~ 133 (330)
.-+|.+||=.|+| .+|+++ + ..|+++|+++|.+++-++
T Consensus 185 ~~~g~~VlV~G~g--~vG~~a~q~ak~~G~~~vi~~~~~~~~~~ 226 (369)
T cd08301 185 VKKGSTVAIFGLG--AVGLAVAEGARIRGASRIIGVDLNPSKFE 226 (369)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 3478899999864 555443 3 367778999998887553
No 355
>PRK08862 short chain dehydrogenase; Provisional
Probab=22.92 E-value=1.9e+02 Score=26.03 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcccCCHHHHH---HHHcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~---a~~~ga~~V~~tD~~~~vl~ 133 (330)
.++||++|=.|++.|+---. ++..|+ +|++.+.+++-++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~ 43 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALK 43 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 35789999999999873222 345787 7999998877653
No 356
>PRK09242 tropinone reductase; Provisional
Probab=22.62 E-value=3e+02 Score=24.69 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
+.++||++|=.|++.|+-.-++ +..|+ +|++++.+.+-+
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~ 46 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADAL 46 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHH
Confidence 4578999999999877655443 34577 799999887654
No 357
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.56 E-value=4.2e+02 Score=23.62 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=27.6
Q ss_pred CCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
.+.+|++|=.|++.|+-.-.+ +..|+ +|+++|.+++-+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~ 46 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERA 46 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHH
Confidence 467999999998877644332 34676 899999887654
No 358
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=22.51 E-value=1.5e+02 Score=28.72 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl 132 (330)
.-+|.+||=.|+|. |+..+.++ ..|+.+|+++|-+++-+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~ 222 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKF 222 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 45688999888752 33333333 36777899999887654
No 359
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.49 E-value=2.7e+02 Score=26.75 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEEccc--CCHHHHH-HHHcCCCeEEEEeCCh
Q 020125 92 QLSFRGKRVLELSCG--YGLPGIF-ACLKGAGTVHFQDLSA 129 (330)
Q Consensus 92 ~~~~~~k~VLELGcG--tGL~gi~-a~~~ga~~V~~tD~~~ 129 (330)
...++||+|+=+|+| .|.+=.. +...|| +|+.++...
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t 193 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT 193 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence 357899999999999 4655333 445788 899988743
No 360
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.39 E-value=2.3e+02 Score=25.86 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCCCCCEEEEEcccCCHHHHH---HHHcCCCeEEEEeCChHHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~---a~~~ga~~V~~tD~~~~vl~ 133 (330)
..++||++|=.|++.|+-.-. ++..|+ +|+++|.+++-++
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~ 46 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLK 46 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 347899999999998874433 234687 7999999877553
No 361
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=22.23 E-value=75 Score=26.50 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred EEEEEcccC-CH-HHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 99 RVLELSCGY-GL-PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 99 ~VLELGcGt-GL-~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
+|+=+|||. |. ..-.+++.|..++++.|.+.- ...|+.++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v-----~~~nl~r~~~ 44 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV-----ELSNLNRQFL 44 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc-----Ccchhhcccc
Confidence 477788873 32 223356789999999999764 3367776653
No 362
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=21.97 E-value=1.4e+02 Score=28.43 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--H----cCC------CeEEEEeCChHHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--L----KGA------GTVHFQDLSAETI 132 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~--~----~ga------~~V~~tD~~~~vl 132 (330)
++..||-.|......+ ..+++.+|+=+|+|+.-.||+-. . .|. +++++.|..--+.
T Consensus 5 aaV~lAgll~Al~~~g-~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~ 72 (255)
T PF03949_consen 5 AAVVLAGLLNALRVTG-KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLT 72 (255)
T ss_dssp HHHHHHHHHHHHHHHT-S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEB
T ss_pred HHHHHHHHHHHHHHhC-CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEe
Confidence 4566776665432222 35789999999999988887722 2 377 7999999976544
No 363
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.91 E-value=1.6e+02 Score=26.27 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEEcccC-CHHHHH-HHHcCCCeEEEEeCChHHHHH
Q 020125 99 RVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETIRC 134 (330)
Q Consensus 99 ~VLELGcGt-GL~gi~-a~~~ga~~V~~tD~~~~vl~~ 134 (330)
+|-=+|.|. |++.-. ++..|. +|++.|.|++.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~ 38 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEA 38 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHH
Confidence 455567773 654433 445675 99999999997743
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=21.87 E-value=1.5e+02 Score=28.39 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=27.1
Q ss_pred CCCCCEEEEEcccC-CHHHHHHH-HcCCCeEEEEeCChHHHH
Q 020125 94 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 133 (330)
Q Consensus 94 ~~~~k~VLELGcGt-GL~gi~a~-~~ga~~V~~tD~~~~vl~ 133 (330)
.-+|.+||=+|||. |+..+.++ ..|+ +|+++|.+++-++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~ 204 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLE 204 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHH
Confidence 34689999999853 44444434 3577 7999999887553
No 365
>PRK07478 short chain dehydrogenase; Provisional
Probab=21.76 E-value=4.7e+02 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcccCCHHHHH---HHHcCCCeEEEEeCChHHH
Q 020125 94 SFRGKRVLELSCGYGLPGIF---ACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~k~VLELGcGtGL~gi~---a~~~ga~~V~~tD~~~~vl 132 (330)
.+++|++|=.|++.|+-.-. ++..|+ +|++++.+++-+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~ 43 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAEL 43 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 46789999999987764433 245677 799999887654
No 366
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=21.28 E-value=1.8e+02 Score=29.81 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCC-CEEEEEcccCCHHHHHHHHcCCCeEEEEeCChHHH
Q 020125 94 SFRG-KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 94 ~~~~-k~VLELGcGtGL~gi~a~~~ga~~V~~tD~~~~vl 132 (330)
.|.| +.|+|+|+|.|.++-++...-.-.|.++|.+....
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLV 189 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHH
Confidence 3444 58999999999998776654334899999996543
No 367
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.88 E-value=2e+02 Score=27.74 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhhhcCCCCCCCCEEEEEcccCCHHHHHHH--H----cCC------CeEEEEeCChHH
Q 020125 76 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--L----KGA------GTVHFQDLSAET 131 (330)
Q Consensus 76 ss~~La~~l~~~~~~~~~~~~~k~VLELGcGtGL~gi~a~--~----~ga------~~V~~tD~~~~v 131 (330)
++..||-.|...... ...+++.+|+=+|+|++-.||+-. . .|. +++++.|..--+
T Consensus 5 a~V~lAgllnAlk~~-g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll 71 (279)
T cd05312 5 AAVALAGLLAALRIT-GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLL 71 (279)
T ss_pred HHHHHHHHHHHHHHh-CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeE
Confidence 456666666543222 246788899999999988887722 1 266 699999987543
No 368
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=20.65 E-value=1e+02 Score=30.26 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=28.6
Q ss_pred EEEEEcccC-C-HHHHHHHHcCCCeEEEEeCChHHHHHhhHHHHHHHH
Q 020125 99 RVLELSCGY-G-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 144 (330)
Q Consensus 99 ~VLELGcGt-G-L~gi~a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~ 144 (330)
+||=+|||+ | -+...+++.|.+++++.|.+.--. .|+.++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~-----sNL~RQ~ 43 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY-----SNPVRQS 43 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc-----ccCCccc
Confidence 478899994 3 234446778999999999976432 5666554
No 369
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=20.48 E-value=1.6e+02 Score=27.38 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEcccCCHHHHHHHHc--CCCeEEEEeCCh
Q 020125 93 LSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSA 129 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a~~~--ga~~V~~tD~~~ 129 (330)
..-++.+|||+||..|-.+-+|-+. ....|.+.|+-+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3457889999999999999887653 234688888743
No 370
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.16 E-value=2.7e+02 Score=24.48 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=27.8
Q ss_pred EEEEEcccCCHHHHH--HHHcCCCeEEEEeCChHHHHHhhHHHHHHHHH
Q 020125 99 RVLELSCGYGLPGIF--ACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 145 (330)
Q Consensus 99 ~VLELGcGtGL~gi~--a~~~ga~~V~~tD~~~~vl~~~t~pNv~~N~~ 145 (330)
+|-=+|+|+=-.+|+ ++..|. +|++.|.+++.++.. ...+..++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~-~~~i~~~l~ 47 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA-RKRIERLLD 47 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH-HHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh-hhHHHHHHh
Confidence 355678875222333 345676 999999999998663 456665554
No 371
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.09 E-value=1.8e+02 Score=27.90 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEcccCCHHHHHH--HHcCCCeEEEEeCChH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA--CLKGAGTVHFQDLSAE 130 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a--~~~ga~~V~~tD~~~~ 130 (330)
..+++|+||=||||-.--+|++ +..|+++|++.+-+++
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 4578999999999965445554 3468899999999854
No 372
>PRK05854 short chain dehydrogenase; Provisional
Probab=20.03 E-value=3.5e+02 Score=25.59 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEcccCCHHHHHH---HHcCCCeEEEEeCChHHH
Q 020125 93 LSFRGKRVLELSCGYGLPGIFA---CLKGAGTVHFQDLSAETI 132 (330)
Q Consensus 93 ~~~~~k~VLELGcGtGL~gi~a---~~~ga~~V~~tD~~~~vl 132 (330)
..++||+||=.|++.|+-.-.+ ++.|+ +|++++.+.+-.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~ 51 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKG 51 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 3578999999999887644332 34676 899999887654
Done!