Query 020126
Match_columns 330
No_of_seqs 202 out of 1856
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 99.9 4.2E-26 1.4E-30 226.2 13.2 139 191-329 94-262 (438)
2 3ugo_A RNA polymerase sigma fa 99.9 8.1E-26 2.8E-30 207.5 12.7 139 191-329 7-175 (245)
3 2a6h_F RNA polymerase sigma fa 99.9 3.4E-26 1.2E-30 224.4 7.4 139 191-329 79-247 (423)
4 1sig_A Sigma70, RNA polymerase 99.6 2.9E-15 1E-19 141.3 7.8 66 264-329 265-330 (339)
5 3iyd_F RNA polymerase sigma fa 99.4 7E-15 2.4E-19 149.9 -0.9 65 265-329 375-439 (613)
6 1l0o_C Sigma factor; bergerat 99.2 7.4E-13 2.5E-17 113.8 0.0 90 200-329 4-93 (243)
7 1rp3_A RNA polymerase sigma fa 99.2 5.3E-11 1.8E-15 102.5 7.5 66 264-329 12-80 (239)
8 2q1z_A RPOE, ECF SIGE; ECF sig 98.6 6.7E-08 2.3E-12 80.7 7.0 66 263-329 26-91 (184)
9 1or7_A Sigma-24, RNA polymeras 98.6 1.2E-07 4.1E-12 79.7 7.7 62 264-328 23-84 (194)
10 2o7g_A Probable RNA polymerase 98.1 5.9E-06 2E-10 64.9 6.9 62 264-328 24-85 (112)
11 1h3l_A RNA polymerase sigma fa 97.9 1.8E-05 6.3E-10 59.4 5.5 66 261-328 9-74 (87)
12 2lfw_A PHYR sigma-like domain; 96.2 0.00017 5.8E-09 60.1 -4.3 61 266-328 3-63 (157)
13 3n0r_A Response regulator; sig 94.5 0.013 4.4E-07 53.6 2.1 63 264-328 21-83 (286)
14 3iyd_F RNA polymerase sigma fa 93.9 0.0095 3.2E-07 60.8 -0.2 34 190-223 95-128 (613)
15 3ugo_A RNA polymerase sigma fa 58.9 3.5 0.00012 37.3 1.6 39 225-263 200-240 (245)
16 2jt1_A PEFI protein; solution 57.2 13 0.00044 28.4 4.3 28 232-259 18-45 (77)
17 1tc3_C Protein (TC3 transposas 57.0 32 0.0011 21.3 6.1 41 203-260 3-43 (51)
18 3knw_A Putative transcriptiona 45.3 1.1E+02 0.0039 24.2 8.9 72 234-305 29-101 (212)
19 3mn2_A Probable ARAC family tr 41.8 40 0.0014 25.5 5.0 35 227-261 7-41 (108)
20 1sig_A Sigma70, RNA polymerase 40.0 11 0.00036 35.1 1.6 19 205-223 1-19 (339)
21 3f2g_A Alkylmercury lyase; MER 37.7 29 0.00099 31.6 4.1 27 235-261 33-59 (220)
22 3oio_A Transcriptional regulat 37.5 38 0.0013 25.9 4.3 34 228-261 13-46 (113)
23 1jko_C HIN recombinase, DNA-in 36.6 49 0.0017 20.9 4.1 22 240-261 23-44 (52)
24 3oou_A LIN2118 protein; protei 36.6 54 0.0018 24.8 5.0 36 226-261 9-44 (108)
25 1p4w_A RCSB; solution structur 35.4 1.5E+02 0.0052 22.9 8.0 51 192-260 21-71 (99)
26 3lsg_A Two-component response 34.8 60 0.0021 24.2 5.0 33 229-261 9-42 (103)
27 2k9s_A Arabinose operon regula 34.0 56 0.0019 24.7 4.7 35 227-261 8-43 (107)
28 3eup_A Transcriptional regulat 31.1 98 0.0034 24.3 5.9 69 239-307 32-100 (204)
29 3pas_A TETR family transcripti 30.8 1.8E+02 0.0063 22.4 8.8 71 235-305 24-95 (195)
30 2zc2_A DNAD-like replication p 30.3 1.1E+02 0.0037 22.4 5.6 47 244-294 29-76 (78)
31 3mnl_A KSTR, transcriptional r 30.1 1.9E+02 0.0065 22.6 7.5 66 239-304 41-106 (203)
32 3mzy_A RNA polymerase sigma-H 29.6 1.2E+02 0.0041 23.4 6.1 36 237-272 123-158 (164)
33 4dyq_A Gene 1 protein; GP1, oc 28.3 1.9E+02 0.0065 23.5 7.3 48 202-266 9-57 (140)
34 1bl0_A Protein (multiple antib 27.8 61 0.0021 25.5 4.1 32 230-261 19-50 (129)
35 3pru_C Phycobilisome 32.1 kDa 27.2 2.2E+02 0.0076 24.7 7.7 101 179-306 10-121 (154)
36 3rd3_A Probable transcriptiona 27.0 2.2E+02 0.0075 22.0 9.3 81 234-314 25-107 (197)
37 3qbm_A TETR transcriptional re 26.9 2.2E+02 0.0076 22.0 8.9 72 233-304 21-93 (199)
38 3mkl_A HTH-type transcriptiona 26.8 74 0.0025 24.6 4.3 33 229-261 14-46 (120)
39 3nxc_A HTH-type protein SLMA; 26.1 2.4E+02 0.0082 22.2 8.3 24 238-261 45-68 (212)
40 1vc3_B L-aspartate-alpha-decar 26.0 2.5 8.6E-05 34.4 -4.4 32 292-323 6-37 (96)
41 2a6h_F RNA polymerase sigma fa 25.7 72 0.0025 30.9 4.9 34 226-259 273-308 (423)
42 1rp3_A RNA polymerase sigma fa 25.6 2.8E+02 0.0096 22.8 8.5 41 231-271 196-236 (239)
43 1jhf_A LEXA repressor; LEXA SO 25.2 1.4E+02 0.0047 25.0 6.1 45 205-260 3-48 (202)
44 3nph_B Phycobilisome 32.1 kDa 25.1 2.8E+02 0.0097 23.9 8.0 100 180-306 6-116 (148)
45 3plx_B Aspartate 1-decarboxyla 24.1 2.9 0.0001 34.4 -4.4 31 292-322 6-36 (102)
46 1zx4_A P1 PARB, plasmid partit 24.1 78 0.0027 28.1 4.4 22 239-260 25-46 (192)
47 3ppb_A Putative TETR family tr 24.1 2.5E+02 0.0084 21.6 10.9 72 234-305 24-96 (195)
48 1uhe_A Aspartate 1-decarboxyla 23.6 2.4 8.4E-05 34.5 -4.9 31 292-322 5-35 (97)
49 3kor_A Possible Trp repressor; 23.1 2E+02 0.0069 23.9 6.5 85 148-258 11-95 (119)
50 2ofy_A Putative XRE-family tra 23.0 1.9E+02 0.0065 20.4 5.7 48 240-296 29-76 (86)
51 3dcf_A Transcriptional regulat 23.0 2.8E+02 0.0095 21.8 10.6 72 235-306 47-119 (218)
52 2v57_A TETR family transcripti 21.6 2.9E+02 0.0097 21.4 8.8 45 237-281 31-75 (190)
53 2kkm_A Translation machinery-a 21.6 73 0.0025 26.9 3.6 78 204-314 43-122 (144)
54 3hug_A RNA polymerase sigma fa 21.5 2.4E+02 0.0083 20.6 9.1 32 239-270 54-85 (92)
55 3k2z_A LEXA repressor; winged 20.6 1.3E+02 0.0045 25.4 5.0 28 233-260 19-46 (196)
56 3g1o_A Transcriptional regulat 20.6 3.7E+02 0.013 22.3 8.8 69 238-306 63-133 (255)
57 2jpc_A SSRB; DNA binding prote 20.1 1.9E+02 0.0064 19.2 4.9 39 240-281 15-53 (61)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=99.93 E-value=4.2e-26 Score=226.19 Aligned_cols=139 Identities=34% Similarity=0.551 Sum_probs=120.2
Q ss_pred hhHHHHHHhcCCCCCCCHHHHHHHHHHHHcCccchhHHH------------------HHHHhhCCCCchHHHHH------
Q 020126 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL------------------RLKERLGCEPSMEQLAA------ 246 (330)
Q Consensus 191 ~~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~------------------~l~~~lg~ePt~~e~A~------ 246 (330)
+.++.||++|+++|+||++||++|+++|+.|+.+++... +....+++.|+.++|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 578889999999999999999999999999966443221 12234567788777632
Q ss_pred ------HhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhH
Q 020126 247 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (330)
Q Consensus 247 ------a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTY 320 (330)
+++.+..+|...+..|..|+++||..|+++|+++|++|.++|.+++||||||+|||++|+++|||++|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 23566788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 020126 321 VYWWIRQSI 329 (330)
Q Consensus 321 A~~wIR~aI 329 (330)
|+||||++|
T Consensus 254 A~~wIR~~I 262 (438)
T 1l9z_H 254 ATWWIRQAI 262 (438)
T ss_pred HHHHHHHHH
Confidence 999999976
No 2
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.93 E-value=8.1e-26 Score=207.46 Aligned_cols=139 Identities=32% Similarity=0.522 Sum_probs=119.9
Q ss_pred hhHHHHHHhcCCCCCCCHHHHHHHHHHHHcCccchhHHHHH---HHh-----------------------hCCCCchHHH
Q 020126 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL---KER-----------------------LGCEPSMEQL 244 (330)
Q Consensus 191 ~~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l---~~~-----------------------lg~ePt~~e~ 244 (330)
|.++.||++|+++|+||++||++|+++|+.|..+....... +.. .+.+|+..+|
T Consensus 7 d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~ 86 (245)
T 3ugo_A 7 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 86 (245)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHHH
T ss_pred CcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHHH
Confidence 68999999999999999999999999999997633221100 000 1367889999
Q ss_pred HHHhcCCh----HHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhH
Q 020126 245 AASLRISR----PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (330)
Q Consensus 245 A~a~~~s~----~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTY 320 (330)
|.+.+++. .+|.+.+..|..|+++|+..|.|+|.++|.+|.+.+.+.+||+|+|++||++|+++|||++|++|+||
T Consensus 87 ~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ty 166 (245)
T 3ugo_A 87 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 166 (245)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHH
T ss_pred HHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHHH
Confidence 99988864 34556677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 020126 321 VYWWIRQSI 329 (330)
Q Consensus 321 A~~wIR~aI 329 (330)
++||||++|
T Consensus 167 a~~~ir~~i 175 (245)
T 3ugo_A 167 ATWWIRQAI 175 (245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=99.92 E-value=3.4e-26 Score=224.40 Aligned_cols=139 Identities=35% Similarity=0.578 Sum_probs=116.8
Q ss_pred hhHHHHHHhcCCCCCCCHHHHHHHHHHHHcCccchhHHHH------------------HHHhhCCCCchHH---------
Q 020126 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR------------------LKERLGCEPSMEQ--------- 243 (330)
Q Consensus 191 ~~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~------------------l~~~lg~ePt~~e--------- 243 (330)
+.++.||++|++.|+||++||++|+++++.|+.+.+.... ....+++.|+.++
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVEE 158 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHHHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhhhh
Confidence 5888999999999999999999999999998653332111 1122345565433
Q ss_pred HHH---HhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhH
Q 020126 244 LAA---SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (330)
Q Consensus 244 ~A~---a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTY 320 (330)
|+. +++.+..+|...+..|..|+++||..|+++|+++|++|.++|.+++||||||+|||++|+++|||++|++|+||
T Consensus 159 ~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~FstY 238 (423)
T 2a6h_F 159 IDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 238 (423)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHHHH
T ss_pred hhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHHHH
Confidence 322 34567788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 020126 321 VYWWIRQSI 329 (330)
Q Consensus 321 A~~wIR~aI 329 (330)
|+||||++|
T Consensus 239 a~~wIr~~i 247 (423)
T 2a6h_F 239 ATWWIRQAI 247 (423)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999976
No 4
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.57 E-value=2.9e-15 Score=141.27 Aligned_cols=66 Identities=48% Similarity=0.953 Sum_probs=64.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhccc
Q 020126 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQSI 329 (330)
Q Consensus 264 ~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~aI 329 (330)
.|++.|+..|+|+|.++|.+|.+.+.+.+||+|+|+|||++++.+||+.+|.+|+||++||||+.|
T Consensus 265 ~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~ 330 (339)
T 1sig_A 265 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 330 (339)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999876
No 5
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.44 E-value=7e-15 Score=149.86 Aligned_cols=65 Identities=49% Similarity=0.979 Sum_probs=63.1
Q ss_pred HHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhccc
Q 020126 265 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQSI 329 (330)
Q Consensus 265 ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~aI 329 (330)
|++.|+..|.|+|.++|++|.+++.+.+||+|+|+|||++|+++||+.+|++|+||++||||++|
T Consensus 375 A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i 439 (613)
T 3iyd_F 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI 439 (613)
T ss_dssp HHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999876
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.24 E-value=7.4e-13 Score=113.83 Aligned_cols=90 Identities=36% Similarity=0.501 Sum_probs=0.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 020126 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (330)
Q Consensus 200 i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~s 279 (330)
+...+.++++++.+|+.+++.|+. .+.+.|+..|.++|..
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~----------------------------------------~a~~~l~~~~~~~v~~ 43 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQ----------------------------------------EARDEIIEKNMRLVWS 43 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCH----------------------------------------HHHHHHHHHhHHHHHH
Confidence 345567788888899988888865 7899999999999999
Q ss_pred HHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhccc
Q 020126 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQSI 329 (330)
Q Consensus 280 IAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~aI 329 (330)
+|.+|.+...+.+||+|+|+++|++++++||+.+|.+|.+|+..+|++.+
T Consensus 44 ~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 44 VVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999998765
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.15 E-value=5.3e-11 Score=102.54 Aligned_cols=66 Identities=26% Similarity=0.521 Sum_probs=62.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHcc---cCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhccc
Q 020126 264 LAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQSI 329 (330)
Q Consensus 264 ~ArekLI~~nLpLV~sIAkrY~---~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~aI 329 (330)
.++++|+..|.|+|..+|.+|. +.+.+.+||+|+|+++|++++++||+.+|.+|.||+.+||++.+
T Consensus 12 ~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~ 80 (239)
T 1rp3_A 12 IEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAI 80 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998 56889999999999999999999999999999999999998764
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=98.60 E-value=6.7e-08 Score=80.74 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhccc
Q 020126 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQSI 329 (330)
Q Consensus 263 ~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~aI 329 (330)
..+.+.|+..|.|.|..++.++.+...+.+|++|++.+.+++++.+|++..| .|.+|+...+++.+
T Consensus 26 ~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~ 91 (184)
T 2q1z_A 26 EAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRR 91 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHH
Confidence 4899999999999999999999887789999999999999999999999886 79999999988754
No 9
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=98.57 E-value=1.2e-07 Score=79.66 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=58.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhcc
Q 020126 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQS 328 (330)
Q Consensus 264 ~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~a 328 (330)
.+.+.|+..|.|.|..++.+|.+ ..+.+|++|++.+.+++++.+|++.. .|.+|+...+++.
T Consensus 23 ~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~ 84 (194)
T 1or7_A 23 KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNT 84 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHH
Confidence 89999999999999999999999 89999999999999999999999875 5999999988764
No 10
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.11 E-value=5.9e-06 Score=64.88 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhcc
Q 020126 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQS 328 (330)
Q Consensus 264 ~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~a 328 (330)
.+.+.|+..|.+.+..+|.++ +...+-+|++|+..+.+++.+.+|++. ..|.+|+...+++.
T Consensus 24 ~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~ 85 (112)
T 2o7g_A 24 RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHV 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHH
Confidence 789999999999999999999 777789999999999999999999964 37999998877653
No 11
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=97.87 E-value=1.8e-05 Score=59.37 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhcc
Q 020126 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQS 328 (330)
Q Consensus 261 ~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~a 328 (330)
.+..+.+.|+..|.+.+...+.++.+...+-||++|+..+.+++.+.+|++. ..|.+|+...+++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~ 74 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNT 74 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHH
Confidence 3468899999999999999999998877889999999999999999999975 47999998877653
No 12
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=96.16 E-value=0.00017 Score=60.09 Aligned_cols=61 Identities=7% Similarity=0.082 Sum_probs=52.8
Q ss_pred HHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhcc
Q 020126 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQS 328 (330)
Q Consensus 266 rekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~a 328 (330)
.+.|+..|.+.|..+|.++.+...+-+|++|++.+.+++.+.+|++.. .|.+|+...+++.
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~ 63 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGI 63 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHH
Confidence 356788999999999999988778899999999999999999999764 6999998877653
No 13
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=94.53 E-value=0.013 Score=53.63 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHhhcCCCCCCcchhHHHHHhhcc
Q 020126 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQS 328 (330)
Q Consensus 264 ~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~wIR~a 328 (330)
.+.++|+..|.+.+...|.+|.+...+-||++|+..+-+++...+|++. ..|.+|.+.-+++.
T Consensus 21 ~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~ 83 (286)
T 3n0r_A 21 MHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAI 83 (286)
T ss_dssp CCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHH
Confidence 5788999999999999999998877889999999999999999999975 36999998877653
No 14
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=93.94 E-value=0.0095 Score=60.83 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=14.9
Q ss_pred hhhHHHHHHhcCCCCCCCHHHHHHHHHHHHcCcc
Q 020126 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223 (330)
Q Consensus 190 q~~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~ 223 (330)
.+.++.||+++++.|+||.++|++|+++|..|..
T Consensus 95 ~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~ 128 (613)
T 3iyd_F 95 TDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN 128 (613)
T ss_dssp ----------C--------CSSSTTTHHHHHHHH
T ss_pred CCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH
Confidence 3799999999999999999999999999999964
No 15
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=58.85 E-value=3.5 Score=37.29 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhCCCCchHHHHHHhc--CChHHHHHHHhhhH
Q 020126 225 DDHKLRLKERLGCEPSMEQLAASLR--ISRPELQSILMECS 263 (330)
Q Consensus 225 e~~~~~l~~~lg~ePt~~e~A~a~~--~s~~eL~~~l~~g~ 263 (330)
......+...+|++||.+|+|+.+| ++...++..+..+.
T Consensus 200 ~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar 240 (245)
T 3ugo_A 200 SRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ 240 (245)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 3445567788899999999999999 99999988776543
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=57.16 E-value=13 Score=28.37 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHhhCCCCchHHHHHHhcCChHHHHHHH
Q 020126 232 KERLGCEPSMEQLAASLRISRPELQSIL 259 (330)
Q Consensus 232 ~~~lg~ePt~~e~A~a~~~s~~eL~~~l 259 (330)
.+..|.+|+..|+|+++|+|...+++-+
T Consensus 18 ~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 18 NMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred hhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3335889999999999999976654443
No 17
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.97 E-value=32 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHh
Q 020126 203 EELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM 260 (330)
Q Consensus 203 ~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~ 260 (330)
.+.|++++-..+.....+|. +..++|+.+|++..-+..++.
T Consensus 3 ~~~l~~~~~~~i~~~~~~g~-----------------s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 3 GSALSDTERAQLDVMKLLNV-----------------SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp SCCCCHHHHHHHHHHHHTTC-----------------CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHCcCHHHHHHHHh
Confidence 34677766555555555553 467888888888877766654
No 18
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=45.28 E-value=1.1e+02 Score=24.17 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=48.7
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHH
Q 020126 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (330)
Q Consensus 234 ~lg~-ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikA 305 (330)
..|- ..|..++|+++|++..-+......-.+....++..+..-+..........+.+..+.+..-...++..
T Consensus 29 ~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 29 RKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred HcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 3464 47899999999999999988887766666666666665555555444344566666665555555444
No 19
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=41.84 E-value=40 Score=25.50 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=28.3
Q ss_pred HHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 227 HKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 227 ~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
+..-+.+.+..+++.+++|..+|+|...|.+....
T Consensus 7 ~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 7 VEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666777899999999999999998888776
No 20
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=39.99 E-value=11 Score=35.13 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHcCcc
Q 020126 205 LLTHAEVVRLSKKIKTGLS 223 (330)
Q Consensus 205 lLT~eEE~eL~rkIk~G~~ 223 (330)
|||.|.|++++++|-.|..
T Consensus 1 LLTREgEI~IAKRIE~G~~ 19 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGIN 19 (339)
T ss_dssp ---CCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 6999999999999999965
No 21
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=37.69 E-value=29 Score=31.64 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=24.6
Q ss_pred hCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 235 LGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 235 lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
.|++|+.+++|..+|.+.+++++.+..
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~ 59 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQ 59 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHh
Confidence 699999999999999999999887765
No 22
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=37.45 E-value=38 Score=25.88 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 228 KLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 228 ~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
..-+.+.+..+++.+++|+.+|+|...|.+.+..
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 13 VSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3345555667789999999999999998888776
No 23
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.56 E-value=49 Score=20.90 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.7
Q ss_pred chHHHHHHhcCChHHHHHHHhh
Q 020126 240 SMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 240 t~~e~A~a~~~s~~eL~~~l~~ 261 (330)
+..++|+.+|++..-+..++..
T Consensus 23 s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 23 PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 5678899999999888777654
No 24
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=36.56 E-value=54 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=28.6
Q ss_pred hHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 226 DHKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 226 ~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
.+..-+...+..+++.+++|..+|+|...|.+.+..
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344455666777889999999999999999888776
No 25
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.40 E-value=1.5e+02 Score=22.85 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=33.7
Q ss_pred hHHHHHHhcCCCCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHh
Q 020126 192 RLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM 260 (330)
Q Consensus 192 ~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~ 260 (330)
.+..+...-.....||+. |.+.+..+.+|. +..|+|+.+|++...++..+.
T Consensus 21 ~l~~l~~~~~~~~~Lt~r-e~~Vl~l~~~G~-----------------s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 21 LLEKISAGGYGDKRLSPK-ESEVLRLFAEGF-----------------LVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp HHHHHHCCCCSSSSCCHH-HHHHHHHHHHTC-----------------CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHccCCcccCCCCHH-HHHHHHHHHcCC-----------------CHHHHHHHHCcCHHHHHHHHH
Confidence 344344444445678776 445566666665 468899999999988776655
No 26
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=34.82 E-value=60 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHhhCC-CCchHHHHHHhcCChHHHHHHHhh
Q 020126 229 LRLKERLGC-EPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 229 ~~l~~~lg~-ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
.-+.+.+.. +++.+++|+.+|+|...|.+.+..
T Consensus 9 ~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 9 NIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555666 789999999999999999888776
No 27
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=34.00 E-value=56 Score=24.66 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHhhC-CCCchHHHHHHhcCChHHHHHHHhh
Q 020126 227 HKLRLKERLG-CEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 227 ~~~~l~~~lg-~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
...-+.+.+. .+++.+++|+.+|+|...|.+....
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3344556666 7789999999999999999888776
No 28
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=31.14 E-value=98 Score=24.27 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=40.9
Q ss_pred CchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHHh
Q 020126 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (330)
Q Consensus 239 Pt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAIe 307 (330)
.|..++|+.+|++..-+......-.+....++..+..-+..........+.+..+.+..-...++..+.
T Consensus 32 ~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (204)
T 3eup_A 32 TSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADG 100 (204)
T ss_dssp CCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGG
T ss_pred CCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 678999999999888877666655555555555555444444433333345555555544444444333
No 29
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.75 E-value=1.8e+02 Score=22.37 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=41.0
Q ss_pred hCC-CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHH
Q 020126 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (330)
Q Consensus 235 lg~-ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikA 305 (330)
-|- ..|..++|+.+|++..-+......-.+....++..+..-+..........+.+..+.+..-...+++.
T Consensus 24 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (195)
T 3pas_A 24 HGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRI 95 (195)
T ss_dssp HHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 343 37889999999998888877766655555555555544443333333334455444444444444433
No 30
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.35 E-value=1.1e+02 Score=22.40 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCC-hhHH
Q 020126 244 LAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD-MADL 294 (330)
Q Consensus 244 ~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd-~EDL 294 (330)
|-...+++.+-+..+++.+. ... ..+.++|.+|++.+...|+. .+|.
T Consensus 29 w~~~~~~~~elI~~A~~~a~-~~~---~~s~~Yi~~Il~~W~~~gi~T~e~a 76 (78)
T 2zc2_A 29 TVSDDKTDPDLVRSALREAV-FNG---KTNWNYIQAILRNWRHEGISTLRQV 76 (78)
T ss_dssp HHTTTCCCHHHHHHHHHHHH-HHT---CCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH-HcC---CCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 33344566666666666553 112 34788999999999988874 5553
No 31
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=30.05 E-value=1.9e+02 Score=22.61 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=35.1
Q ss_pred CchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHH
Q 020126 239 PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (330)
Q Consensus 239 Pt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLik 304 (330)
.|..++|+.+|++..-+......-.+....++..+..-+............+..+-+..-...++.
T Consensus 41 ~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (203)
T 3mnl_A 41 VQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNR 106 (203)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 678899999999887776666554444444444444333322222222334444444444433333
No 32
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.58 E-value=1.2e+02 Score=23.38 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=27.6
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHH
Q 020126 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMS 272 (330)
Q Consensus 237 ~ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~ 272 (330)
..-+..|+|+.+|++...++..+..+.....+.+..
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999998888776655555543
No 33
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=28.31 E-value=1.9e+02 Score=23.47 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcC-ChHHHHHHHhhhHHHH
Q 020126 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRI-SRPELQSILMECSLAR 266 (330)
Q Consensus 202 ~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~-s~~eL~~~l~~g~~Ar 266 (330)
+...+|++-..+++..+..|..| .+++...|+ +..-+.+++..+.+-+
T Consensus 9 RPtk~t~e~~e~I~~~i~~G~sl-----------------~~i~~~~~~ps~~T~~~W~~~~~ef~ 57 (140)
T 4dyq_A 9 RPSDYMPEVADDICSLLSSGESL-----------------LKVCKRPGMPDKSTVFRWLAKHEDFR 57 (140)
T ss_dssp -CCSCCTTHHHHHHHHHHTTCCH-----------------HHHHTSTTCCCHHHHHHHHHHCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCcH-----------------HHHHhcCCCCCHHHHHHHHHcCHHHH
Confidence 33445556666789999999763 455666677 6777777777755433
No 34
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.84 E-value=61 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.1
Q ss_pred HHHHhhCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 230 RLKERLGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 230 ~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
-+...+..+++.+++|+.+|+|...|.+.+..
T Consensus 19 ~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 19 WIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34555667789999999999999999888776
No 35
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=27.15 E-value=2.2e+02 Score=24.70 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=64.4
Q ss_pred hhcccCChhhhhhhHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHH
Q 020126 179 QLRSMISPELIQNRLKGYVKGV-VSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQS 257 (330)
Q Consensus 179 ~~~~~~~pEl~q~~l~~YL~~i-~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~ 257 (330)
.+|+..+++.++..++.--++| ++..++..+....|-.+++.|+ ++..++.+
T Consensus 10 e~~p~~s~~~~~~vI~AaYRQVfgn~~~~~seR~~~lESql~nG~---------------------------ItVReFVR 62 (154)
T 3pru_C 10 ELRPDFSLDDAKMVIRAVYRQVLGNDYIMDSERLKGAESLLTNGS---------------------------ISVREFVR 62 (154)
T ss_dssp BCCTTCCHHHHHHHHHHHHHHHTTSCCCCGGGSCHHHHHHHHHTS---------------------------SCHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHHhCCccccccccccCHHHHHHcCC---------------------------cCHHHHHH
Confidence 4455556665555554433333 3333444444455555555553 57778888
Q ss_pred HHhhhHHHHHHHH--HHhHHHHHHHHHHcccCCC-ChhH-------HHHHHHHHHHHHH
Q 020126 258 ILMECSLAREKLV--MSNVRLVMSIAQRYDNMGA-DMAD-------LVQGGLIGLLRGI 306 (330)
Q Consensus 258 ~l~~g~~ArekLI--~~nLpLV~sIAkrY~~~Gv-d~ED-------LIQEG~IGLikAI 306 (330)
.+.....-+...+ ..|.++|.-.-+++.+|.. +.++ +-..|.-|++.++
T Consensus 63 ~LakSe~Yr~~f~~~~~n~R~IEl~~khlLGR~p~~~~E~~~~~~i~a~~G~~a~IDsl 121 (154)
T 3pru_C 63 TVAKSELYKKKFLYNNFQTRVIELNYKHLLGRAPFSEDEVIFHLDLYENQGFDADIDSY 121 (154)
T ss_dssp HHHTSHHHHHHHTTTSCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHcCHHHHHHhccCCCchHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCchhhhhHh
Confidence 8888888888888 4567889999999999865 3222 3356888888775
No 36
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.96 E-value=2.2e+02 Score=22.03 Aligned_cols=81 Identities=7% Similarity=0.022 Sum_probs=51.8
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHc-ccCCCChhHHHHHHHHHHHHHHhhcCC
Q 020126 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRY-DNMGADMADLVQGGLIGLLRGIEKFDS 311 (330)
Q Consensus 234 ~lg~-ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY-~~~Gvd~EDLIQEG~IGLikAIekFDp 311 (330)
..|- ..|..++|+.+|++..-+......=.+....++..+..-+....... ...+.+..+-+..-...+++.+....+
T Consensus 25 ~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 104 (197)
T 3rd3_A 25 VKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCD 104 (197)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCTTSS
T ss_pred HCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCcc
Confidence 3465 47899999999998888876666555555555555554444444433 234567777777777777766665554
Q ss_pred CCC
Q 020126 312 SKG 314 (330)
Q Consensus 312 srG 314 (330)
..+
T Consensus 105 ~~~ 107 (197)
T 3rd3_A 105 EQR 107 (197)
T ss_dssp CCC
T ss_pred ccc
Confidence 444
No 37
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=26.89 E-value=2.2e+02 Score=22.05 Aligned_cols=72 Identities=7% Similarity=-0.118 Sum_probs=44.9
Q ss_pred HhhCCC-CchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHH
Q 020126 233 ERLGCE-PSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 304 (330)
Q Consensus 233 ~~lg~e-Pt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLik 304 (330)
..-|-. .|..++|+.+|++..-+......-.+....++..+..-+............+..+-+....-.++.
T Consensus 21 ~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (199)
T 3qbm_A 21 NVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRS 93 (199)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHG
T ss_pred HHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 345654 789999999999998887777665556666666655555444444333444555555544444433
No 38
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.75 E-value=74 Score=24.57 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCchHHHHHHhcCChHHHHHHHhh
Q 020126 229 LRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 229 ~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
.-+.+.+..+++.+++|..+|++...|.+.+..
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344455566789999999999999988887765
No 39
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=26.10 E-value=2.4e+02 Score=22.18 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=16.4
Q ss_pred CCchHHHHHHhcCChHHHHHHHhh
Q 020126 238 EPSMEQLAASLRISRPELQSILME 261 (330)
Q Consensus 238 ePt~~e~A~a~~~s~~eL~~~l~~ 261 (330)
..|..++|+++|++..-+..-...
T Consensus 45 ~~t~~~Ia~~agvs~~t~Y~~F~s 68 (212)
T 3nxc_A 45 RITTAKLAASVGVSEAALYRHFPS 68 (212)
T ss_dssp -CCHHHHHHHTTSCHHHHHTTCSS
T ss_pred hcCHHHHHHHhCCChhHHHHHCCC
Confidence 477889999999866666544443
No 40
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=26.03 E-value=2.5 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCcchhHHHH
Q 020126 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 323 (330)
Q Consensus 292 EDLIQEG~IGLikAIekFDpsrG~rFsTYA~~ 323 (330)
+||+-.+.|-=.+-|+-+|-+.|.||+||+..
T Consensus 6 ~dLl~aa~i~~~E~V~IvNvnNG~Rf~TYvI~ 37 (96)
T 1vc3_B 6 QDLLDAAGILPFEQVDIYDITNGARLTTYALP 37 (96)
T ss_dssp HHHHHHHTCCTTCEEEEEETTTCCEEEEECEE
T ss_pred HHHHHHcCCCCCCEEEEEECCCCceEEEEEEE
Confidence 45555555555566777889999999999854
No 41
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=25.73 E-value=72 Score=30.92 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=27.2
Q ss_pred hHHHHHHHhhCCCCchHHHHHHhc--CChHHHHHHH
Q 020126 226 DHKLRLKERLGCEPSMEQLAASLR--ISRPELQSIL 259 (330)
Q Consensus 226 ~~~~~l~~~lg~ePt~~e~A~a~~--~s~~eL~~~l 259 (330)
..+.++...+|++|+.+++|..++ ++.+++...+
T Consensus 273 r~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~ 308 (423)
T 2a6h_F 273 RTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETL 308 (423)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 344556678899999999999999 9888876653
No 42
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.57 E-value=2.8e+02 Score=22.76 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=29.9
Q ss_pred HHHhhCCCCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHH
Q 020126 231 LKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271 (330)
Q Consensus 231 l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~ 271 (330)
+.-.....-+.+|+|+.+|++...++..+..+.....+.+.
T Consensus 196 l~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 196 IQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp HHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44444556788999999999999998888866555544443
No 43
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=25.20 E-value=1.4e+02 Score=25.04 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCC-hHHHHHHHh
Q 020126 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRIS-RPELQSILM 260 (330)
Q Consensus 205 lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s-~~eL~~~l~ 260 (330)
.||+.|. ++..++++ +.+..|.+||..|+|+.+|++ ...+...+.
T Consensus 3 ~lt~~q~-~i~~~i~~----------~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQ-EVFDLIRD----------HISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHH-HHHHHHHH----------HHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHH-HHHHHHHH----------HHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 4677654 45555543 344568889999999999998 777765543
No 44
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=25.06 E-value=2.8e+02 Score=23.87 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=63.9
Q ss_pred hcccCChhhhhhhHH-HHHHhcCCCCCCCHHHHHHHHHHHHcCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHH
Q 020126 180 LRSMISPELIQNRLK-GYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSI 258 (330)
Q Consensus 180 ~~~~~~pEl~q~~l~-~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~ 258 (330)
+++..+++.++..++ .|.+=+++..++..+....|-.+++.|. ++..++.+.
T Consensus 6 l~~~~s~~~~~~vI~AaYrQVfgn~~~~~seR~~~lESqLrnG~---------------------------ItVReFVR~ 58 (148)
T 3nph_B 6 LRSRSTEEEVDAVILAVYRQVLGNDHLMSQERLTSAESLLRGRE---------------------------ISVRDFVRA 58 (148)
T ss_dssp BCSSSCSHHHHHHHHHHHHHHHSCSCCCTTTSCHHHHHHHHTTS---------------------------SCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCcccccccccccHHHHHhcCC---------------------------ccHHHHHHH
Confidence 444555555555553 3444344444555554555666666664 477777777
Q ss_pred HhhhHHHHHHHH--HHhHHHHHHHHHHcccCCC-ChhH-------HHHHHHHHHHHHH
Q 020126 259 LMECSLAREKLV--MSNVRLVMSIAQRYDNMGA-DMAD-------LVQGGLIGLLRGI 306 (330)
Q Consensus 259 l~~g~~ArekLI--~~nLpLV~sIAkrY~~~Gv-d~ED-------LIQEG~IGLikAI 306 (330)
+.....-++..+ ..+.++|.-.-+++.+|.. +.++ +-..|.-|++.|+
T Consensus 59 LakSe~Yr~~f~~~~~n~R~IEl~~khlLGRap~~q~Ei~~~~~i~a~~G~~a~IDsl 116 (148)
T 3nph_B 59 VALSEVYRQKFFHSNPQNRFIELNYKHLLGRAPYDQSEIAFHTDLYHQGGYEAEINSY 116 (148)
T ss_dssp HHTSHHHHHHHTTTSCHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHccHHHHHHhccCCCcchHHHHHhhhhcCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 777778888887 4567889999999999854 3333 3356788888775
No 45
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=24.14 E-value=2.9 Score=34.36 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCcchhHHH
Q 020126 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVY 322 (330)
Q Consensus 292 EDLIQEG~IGLikAIekFDpsrG~rFsTYA~ 322 (330)
+||+..+.|-=.+-|+-+|-+.|.||+||+.
T Consensus 6 ~dLl~aA~i~~~E~V~I~NvnNG~Rf~TYvI 36 (102)
T 3plx_B 6 EKLLQASGILEYEKVQVVNVNNGARFETYTI 36 (102)
T ss_dssp HHHHHHHTCCTTCEEEEEETTTCCEEEEECE
T ss_pred HHHHHHcCCCCCCEEEEEECCCCcEEEEEEE
Confidence 4566555555556677789999999999973
No 46
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=24.07 E-value=78 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=15.0
Q ss_pred CchHHHHHHhcCChHHHHHHHh
Q 020126 239 PSMEQLAASLRISRPELQSILM 260 (330)
Q Consensus 239 Pt~~e~A~a~~~s~~eL~~~l~ 260 (330)
-|-+|+|..+|+|+..+-+++.
T Consensus 25 ~tQ~eIA~~lGiSr~~VSR~L~ 46 (192)
T 1zx4_A 25 MSQKDIAAKEGLSQAKVTRALQ 46 (192)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHH
Confidence 4556777777777777766654
No 47
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.06 E-value=2.5e+02 Score=21.61 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=48.2
Q ss_pred hhCC-CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHH
Q 020126 234 RLGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305 (330)
Q Consensus 234 ~lg~-ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikA 305 (330)
..|- ..|..++|+.+|++..-+......-.+....++..+..-+..........+.+..+.+......++..
T Consensus 24 ~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (195)
T 3ppb_A 24 SQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTW 96 (195)
T ss_dssp HTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred hcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Confidence 3464 47789999999999998888777666666666666666655555554445556666665555544443
No 48
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.61 E-value=2.4 Score=34.52 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCcchhHHH
Q 020126 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVY 322 (330)
Q Consensus 292 EDLIQEG~IGLikAIekFDpsrG~rFsTYA~ 322 (330)
+||+-.+.|-=.+-|+-+|-+.|.||+||+.
T Consensus 5 ~dLldaA~il~~E~V~IvNvnNG~RfeTYvI 35 (97)
T 1uhe_A 5 EDLAKLAKLREGMKVEIVDVNNGERFSTYVI 35 (97)
T ss_dssp HHHHHHTTCCTTCEEEEEETTTCCEEEEECE
T ss_pred HHHHHhcCCCCCCEEEEEECCCCceEEEEEE
Confidence 3555555554555567788999999999974
No 49
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=23.12 E-value=2e+02 Score=23.87 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred eccchhhhhhhhhhhhhhccccccccccccchhcccCChhhhhhhHHHHHHhcCCCCCCCHHHHHHHHHHHHcCccchhH
Q 020126 148 CSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDH 227 (330)
Q Consensus 148 ~sg~sar~~r~~~~~~~~~~~~~~~~~~~~k~~~~~~~pEl~q~~l~~YL~~i~~~~lLT~eEE~eL~rkIk~G~~Le~~ 227 (330)
.||.-+|.-=++.|-|+... ...++-|....++|. +..++.++. |++|-..|..+++-
T Consensus 11 ~~~~~~~~~m~~~~~K~~~~------d~L~~AIl~l~~~ee----~~~fl~dL~-----T~~E~~aLs~R~eV------- 68 (119)
T 3kor_A 11 SSGLVPRGSMQIEKLRGAAL------DELFDAILTLENREE----CYQFFDDLC-----TVNEIQSLSQRLQV------- 68 (119)
T ss_dssp --------CCGGGGGCSHHH------HHHHHHHHTCCSHHH----HHHHHHHHS-----CHHHHHHHHHHHHH-------
T ss_pred ccCCCccchhhHhhhccccH------HHHHHHHHHhCCHHH----HHHHHHHhC-----CchHHHHHHHHHHH-------
Confidence 46666666544444444321 334555555556663 455666665 77777677766431
Q ss_pred HHHHHHhhCCCCchHHHHHHhcCChHHHHHH
Q 020126 228 KLRLKERLGCEPSMEQLAASLRISRPELQSI 258 (330)
Q Consensus 228 ~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~ 258 (330)
...+..--+..|+|+.+|+|..-+-++
T Consensus 69 ----~klL~~G~syreIA~~~g~S~aTIsRv 95 (119)
T 3kor_A 69 ----AKMIKQGYTYATIEQESGASTATISRV 95 (119)
T ss_dssp ----HHHHHHTCCHHHHHHHHCCCHHHHHHH
T ss_pred ----HHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 111222256788999999988776544
No 50
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.99 E-value=1.9e+02 Score=20.40 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=31.5
Q ss_pred chHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHH
Q 020126 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296 (330)
Q Consensus 240 t~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQ 296 (330)
+-.++|..+|++..-+.++...... .-....+..+|.-| |++.++|+.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~------~p~~~~l~~ia~~l---~v~~~~l~~ 76 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIA------TPAFFTIAAVARVL---DLSLDDVAA 76 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCS------SCBHHHHHHHHHHT---TCCHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC------CCCHHHHHHHHHHh---CCCHHHHhc
Confidence 7789999999998887666543210 01234456667665 788888763
No 51
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.96 E-value=2.8e+02 Score=21.82 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=41.7
Q ss_pred hCC-CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccCCCChhHHHHHHHHHHHHHH
Q 020126 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (330)
Q Consensus 235 lg~-ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~Gvd~EDLIQEG~IGLikAI 306 (330)
.|- ..|..++|+.+|++..-+......-.+....++.....-+..........+.+..+-+..-...++..+
T Consensus 47 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (218)
T 3dcf_A 47 KGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTI 119 (218)
T ss_dssp TCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred cCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 454 477899999999988888776665555555555554444444333333344454444444444444443
No 52
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=21.61 E-value=2.9e+02 Score=21.44 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=30.5
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 020126 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (330)
Q Consensus 237 ~ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIA 281 (330)
...|..++|+.+|++..-+......=.+....++..+..-+....
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 75 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAI 75 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 557889999999998888877766655555555555554443333
No 53
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=21.60 E-value=73 Score=26.92 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHH--cCccchhHHHHHHHhhCCCCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 020126 204 ELLTHAEVVRLSKKIK--TGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (330)
Q Consensus 204 ~lLT~eEE~eL~rkIk--~G~~Le~~~~~l~~~lg~ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIA 281 (330)
+.+|.+|-.+|+...- ....|++++ ++..-||+|+..+ .+++. .+..-.
T Consensus 43 ~~~t~~e~~~lI~~yl~R~d~ELeql~--~~rR~gRp~s~Re------------------------~~L~~---~~~~E~ 93 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERDDTELDELK--KKRRSNRPPSNRQ------------------------VLLQQ---RRDQEL 93 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH--HHGGGTCCCTTHH------------------------HHHHH---HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHH--HhhCCCCCCchHH------------------------HHHHH---HHHHHH
Confidence 5699999888887643 222333333 3456688886533 22221 223344
Q ss_pred HHcccCCCChhHHHHHHHHHHHHHHhhcCCCCC
Q 020126 282 QRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 314 (330)
Q Consensus 282 krY~~~Gvd~EDLIQEG~IGLikAIekFDpsrG 314 (330)
..|.. |+++-||..+.++-+++ .+|-+-+
T Consensus 94 ~ey~t-G~~iPDLtd~~nvk~Lr---~W~G~~~ 122 (144)
T 2kkm_A 94 KEFKA-GFLCPDLSDAKNMEFLR---NWNGTFG 122 (144)
T ss_dssp HHHHT-TEEEECSCCHHHHHHHH---TCSSCST
T ss_pred HHHcc-CccCCCCCCHHHHHHHH---HcCCChh
Confidence 55665 99999999999987764 7775543
No 54
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.52 E-value=2.4e+02 Score=20.60 Aligned_cols=32 Identities=25% Similarity=0.125 Sum_probs=24.3
Q ss_pred CchHHHHHHhcCChHHHHHHHhhhHHHHHHHH
Q 020126 239 PSMEQLAASLRISRPELQSILMECSLAREKLV 270 (330)
Q Consensus 239 Pt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI 270 (330)
-+..|+|..+|++...++..+..+.....+.+
T Consensus 54 ~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 54 WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999888876655444443
No 55
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.62 E-value=1.3e+02 Score=25.37 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=21.9
Q ss_pred HhhCCCCchHHHHHHhcCChHHHHHHHh
Q 020126 233 ERLGCEPSMEQLAASLRISRPELQSILM 260 (330)
Q Consensus 233 ~~lg~ePt~~e~A~a~~~s~~eL~~~l~ 260 (330)
...|.+||..|+|+.+|++...+.+.+.
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 3468899999999999999766554443
No 56
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=20.57 E-value=3.7e+02 Score=22.33 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCchHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHcccC-C-CChhHHHHHHHHHHHHHH
Q 020126 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM-G-ADMADLVQGGLIGLLRGI 306 (330)
Q Consensus 238 ePt~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIAkrY~~~-G-vd~EDLIQEG~IGLikAI 306 (330)
..|..++|+.+|++..-+......-.+....++..+..-+.......... + .+..+.+..-...++..+
T Consensus 63 ~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (255)
T 3g1o_A 63 DISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETF 133 (255)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence 36788999999998877776666555555555555544443333332222 2 355555555444444444
No 57
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.05 E-value=1.9e+02 Score=19.19 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=24.1
Q ss_pred chHHHHHHhcCChHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 020126 240 SMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 281 (330)
Q Consensus 240 t~~e~A~a~~~s~~eL~~~l~~g~~ArekLI~~nLpLV~sIA 281 (330)
+..|+|..+|++...+...+. .++.+|=..+..-....|
T Consensus 15 s~~eIA~~l~is~~tV~~~~~---~~~~kl~~~~~~~l~~~~ 53 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRM---NMMRKLQVHKVTELLNCA 53 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHH---HHHHHHTCSSHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH---HHHHHHCCCCHHHHHHHH
Confidence 467899999999988876655 344444444443333333
Done!