BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020127
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 168/331 (50%), Gaps = 20/331 (6%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDIIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P IDL+ + D R + I+++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 67 ACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP ++ + FF L E+ K +D + K + N
Sbjct: 73 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 TEKVSNWRDYLRLHCYPLQDY-IHEWPSNPPSF---RYNYARGLVL---RLLEAISESLG 178
W DY YP + + WP P + YA+ L L ++ +A+S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 179 LQRDYIDKALGKHRQ---HMALNYYPHCPQPDLTYGLPGHIDPNLITVLLQDDVPGLQVL 235
L+ D ++K +G + M +NYYP CPQP+L G+ H D + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252
Query: 236 RKGKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 294
+GKW+ +P++ ++ IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 312
Query: 295 VIAPAKDLIDERHPAKFWNRGLVDECCLDLF 325
V+ P +++ PAKF R LF
Sbjct: 313 VLKPLPEMVSVESPAKFPPRTFAQHIEHKLF 343
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/317 (32%), Positives = 165/317 (52%), Gaps = 20/317 (6%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDIIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P IDL+ + D R + I+++ +
Sbjct: 12 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 67 ACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP ++ + FF L E+ K +D + K + N
Sbjct: 72 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 126 TEKVSNWRDYLRLHCYPLQDY-IHEWPSNPPSF---RYNYARGLVL---RLLEAISESLG 178
W DY YP + + WP P + YA+ L L ++ +A+S LG
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 179 LQRDYIDKALGKHRQ---HMALNYYPHCPQPDLTYGLPGHIDPNLITVLLQDDVPGLQVL 235
L+ D ++K +G + M +NYYP CPQP+L G+ H D + +T +L + VPGLQ+
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 251
Query: 236 RKGKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 294
+GKW+ +P++ ++ IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 252 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 311
Query: 295 VIAPAKDLIDERHPAKF 311
V+ P +++ PAKF
Sbjct: 312 VLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 164/331 (49%), Gaps = 20/331 (6%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLIDLQVL---DGPRRLDIIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P IDL+ + D R + I+++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 67 ACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP + + FF L E+ K +D + K + N
Sbjct: 73 ASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 TEKVSNWRDYLRLHCYPLQDY-IHEWPSNPPSF---RYNYARGLVL---RLLEAISESLG 178
W DY YP + + WP P + YA+ L L ++ +A+S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 179 LQRDYIDKALGKHRQ---HMALNYYPHCPQPDLTYGLPGHIDPNLITVLLQDDVPGLQVL 235
L+ D ++K +G + +NYYP CPQP+L G+ H D + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLF 252
Query: 236 RKGKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 294
+GKW+ +P++ + IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 253 YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 312
Query: 295 VIAPAKDLIDERHPAKFWNRGLVDECCLDLF 325
V+ P + + PAKF R LF
Sbjct: 313 VLKPLPEXVSVESPAKFPPRTFAQHIEHKLF 343
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 145/275 (52%), Gaps = 19/275 (6%)
Query: 43 SIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPES 102
+ P+I L ++G R + I AC++ GFF++ NHGIP + +++ T+ +K
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 103 ERLKSYSDDPSKSTRLSTSFNVNTEKVS-NWRDYLRLHCYPLQDYIHEWPSNPPSFRY-- 159
+R K SK+ V E +W L P+ + I E P +R
Sbjct: 63 QRFKELV--ASKALE-----GVQAEVTDXDWESTFFLKHLPISN-ISEVPDLDEEYREVX 114
Query: 160 -NYAR---GLVLRLLEAISESLGLQRDYIDKALGKHRQ---HMALNYYPHCPQPDLTYGL 212
++A+ L LL+ + E+LGL++ Y+ A + ++ YP CP+PDL GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 213 PGHIDPNLITVLLQDD-VPGLQVLRKGKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLH 271
H D I +L QDD V GLQ+L+ G+W+ V P ++ +V +GDQ++V++N +YKSV H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 272 RALVNCDKERISIPTFYCPSPDAVIAPAKDLIDER 306
R + D R S+ +FY P DAVI PA L+++
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKE 269
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 20/246 (8%)
Query: 62 KQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPSKSTRLSTS 121
+++G + + GF + ++ + + I++ + +AFF LP E K Y+ R
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP-VETKKQYAG-VKGGARGYIP 81
Query: 122 FNVNTEKVSN-------W---RDYLRLHCYPLQDYIHEWPSNPPSFR------YNYARGL 165
F V T K ++ W RD H + + WP+ P+F+ YN G
Sbjct: 82 FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGX 141
Query: 166 VLRLLEAISESLGLQRDYIDKALGKHRQHMALNYYPHCPQPDLTYGLPGHIDPNLITVLL 225
++LEAI+ L L+RD+ + + L +YP P+ H D N IT+LL
Sbjct: 142 GGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 226 QDDVPGLQVL-RKGKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRALVNCDKERISI 284
+ GL+VL R G+WLP+NP P ++ IGD ++ L+N+ S +HR +VN ER +
Sbjct: 202 GAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 285 PTFYCP 290
P + P
Sbjct: 261 PRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 101/264 (38%), Gaps = 34/264 (12%)
Query: 56 RRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPSKS 115
R D K+ ++ + GF + NH I + ++ + + +AFF +
Sbjct: 10 RAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGF 69
Query: 116 TRLSTSFNVNTEKVSNWRDYLRLHCYPLQDYIHEWPSNPPSFR------YNYARGLVLRL 169
S S V + ++Y H YP W P S R Y A L L
Sbjct: 70 FPASISETAKGHTVKDIKEYY--HVYP-------WGRIPDSLRANILAYYEKANTLASEL 120
Query: 170 LEAISESLGLQRDYIDKALG---------KHRQHMALNYYPHCPQPDLTYGL--PGHIDP 218
LE I D I H+ + + +YP + + H D
Sbjct: 121 LEWIET---YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDI 177
Query: 219 NLITVLLQDDVPGLQVLRK-GKWLPVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRAL--- 274
NLITVL + PGLQV K G WL V I+ IGD +Q S+ + S HR +
Sbjct: 178 NLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPE 237
Query: 275 -VNCDKERISIPTFYCPSPDAVIA 297
+ K RIS+P F P P V++
Sbjct: 238 GTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 47/308 (15%)
Query: 39 ISDGSIPLIDLQVL---DGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRA 95
+S ++P ID+ L D ++ + +QI A + GFF NHGI + + T+
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKE 60
Query: 96 FFK--LPESE---RLKSYSDDPSKSTRLSTSFNVNTEKVSNWRDYLRLHCYPLQDYI--- 147
F PE + +++Y+ + R ++ +K YL + P I
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 148 ---HE---WP--SNPPSFR------YNYARGLVLRLLEAISESLGLQRDYIDKAL--GKH 191
HE WP + P F+ Y GL LL+ + +LG + ++ +
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 192 RQHMALNYYPHC---PQPDLTYGLPG-------HIDPNLITVLLQDDVPGLQVLRKGKWL 241
+ L YP+ P+ + G H D +LITVL Q +V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 242 PVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRA-LVNCDKERISIPTFYCPSPDAVIAPAK 300
+ +++ G M L+N+ YK+ +HR VN ER S+P F D+VI P
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP-- 296
Query: 301 DLIDERHP 308
D R P
Sbjct: 297 --FDPREP 302
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 127/308 (41%), Gaps = 47/308 (15%)
Query: 39 ISDGSIPLIDLQVL---DGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRA 95
+S ++P ID+ L D ++ + +QI A + GFF NHGI + + T+
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKE 60
Query: 96 FFK--LPESE---RLKSYSDDPSKSTRLSTSFNVNTEKVSNWRDYLRLHCYPLQDYI--- 147
F PE + +++Y+ + R ++ +K YL + P I
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 148 ---HE---WP--SNPPSFR------YNYARGLVLRLLEAISESLGLQRDYIDKAL--GKH 191
HE WP + P F+ Y GL LL+ + +LG + ++ +
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 192 RQHMALNYYPHC---PQPDLTYGLPG-------HIDPNLITVLLQDDVPGLQVLRKGKWL 241
+ L YP+ P+ + G H D +LITVL Q +V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 242 PVNPIPNTFIVKIGDQMQVLSNDRYKSVLHRA-LVNCDKERISIPTFYCPSPDAVIAPAK 300
+ +++ G M L+N+ YK+ +HR VN ER S+P F D+VI P
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP-- 296
Query: 301 DLIDERHP 308
D R P
Sbjct: 297 --FDPREP 302
>pdb|1YN4|A Chain A, Crystal Structures Of Eap Domains From Staphylococcus
Aureus Reveal An Unexpected Homology To Bacterial
Superantigens
Length = 99
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 79 HGIPETI-INSMLSITRAFFKLPESERLKSYSDDPSKSTRLSTSFNVNTEKVSN 131
H +P TI ++ + ++ R +F PE++++ D L++ V TEK++N
Sbjct: 3 HTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINN 56
>pdb|2O49|A Chain A, Crystal Structure Of The N-Terminal Cut Domain Of Satb1
Bound To Matrix Attachment Region Dna
pdb|2O4A|A Chain A, Crystal Structure Of The N-Terminal Cut Domain Of Satb1
Bound To Matrix Attachment Region Dna
Length = 93
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 82 PETIINSMLSITRA---FFKLPESERLKSYSDDPSKSTR 117
P+T S+L RA F +LPE+ER + Y D+ +S R
Sbjct: 52 PKTASQSLLVNLRAMQNFLQLPEAERDRIYQDERERSLR 90
>pdb|3HY2|X Chain X, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
pdb|3HY2|Y Chain Y, Crystal Structure Of Sulfiredoxin In Complex With
Peroxiredoxin I And Atp:mg2+
Length = 110
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 43 SIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFF 97
S+P ID+ + G + D G A ++ + Q++ IP ++ S LS R +
Sbjct: 48 SVPPIDVLWIKGAQGGDYFYSFGGAHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|2YYT|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
Length = 246
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 23 NYIRPISDRPNLTEVQISDGSIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIP 82
++RP + P +V + +L +GP + +K+ G A F +K H IP
Sbjct: 21 RFLRPFAGTPLFVKVGM--------ELYYQEGPAIVAFLKEQGHAV----FLDLKLHDIP 68
Query: 83 ETIINSMLSITR 94
T+ +M + R
Sbjct: 69 NTVKQAMKGLAR 80
>pdb|3LQ9|A Chain A, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
Regulator Of Mtor
pdb|3LQ9|B Chain B, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
Regulator Of Mtor
Length = 134
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 58 LDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPSKSTR 117
LD+ + G++C G + +P + +L + + P+ + L S ++ PS+S
Sbjct: 60 LDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLW--PKIQGLFSSANSPSQSLT 117
Query: 118 LSTSFNVNTEKV 129
LST F V +K+
Sbjct: 118 LSTGFRVIKKKL 129
>pdb|2ERW|A Chain A, Crystal Structure Of Infestin 4, A Factor Xiia Inhibitor
Length = 56
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 198 NYYPHCPQPDLTYGLPGHIDPNLITVLLQDDVPGLQVLRKGK 239
NY P C TYG +P ++ Q VPGL+++ +G+
Sbjct: 11 NYVPVCGSDGKTYG-----NPCMLNCAAQTKVPGLKLVHEGR 47
>pdb|1SFU|A Chain A, Crystal Structure Of The Viral Zalpha Domain Bound To
Left- Handed Z-Dna
pdb|1SFU|B Chain B, Crystal Structure Of The Viral Zalpha Domain Bound To
Left- Handed Z-Dna
Length = 75
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 96 FFKLPESERLKSYSDDPSKSTRLSTSFNVNTEKVSNWRDYLRLHCYPLQDYIHEWPSNPP 155
F L + E L ++D + + LS +N +K++ +L+ +D + PSNPP
Sbjct: 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQ-----QLYKLQKEDTVKMVPSNPP 67
Query: 156 SFRYNY 161
+ NY
Sbjct: 68 KWFKNY 73
>pdb|3CYI|A Chain A, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Atp:mg2+
Length = 110
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 43 SIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFF 97
S+P ID+ + G + D G + ++ + Q++ IP ++ S LS R +
Sbjct: 48 SVPPIDVLWIKGAQGGDYFYSFGGSHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 68 CQHDGFFQVKNHGIPETIINSMLSITRAFFKLPESERLKSYSDDPSKSTRLSTSFNVNTE 127
QHDG +K TI NS++ + S+ S T + FN TE
Sbjct: 181 VQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE 240
Query: 128 KVSNWRDYLRLHCYPLQDYIHEWPSNPPSFRYNYARGL 165
+ R Y +H + + + + + P +RY Y+ G+
Sbjct: 241 RAPRVR-YGSIHSF---NNVFKGDAKDPVYRYQYSFGI 274
>pdb|1XW3|A Chain A, Crystal Structure Of Human Sulfiredoxin (srx)
Length = 110
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 43 SIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFF 97
S+P ID+ + G + D G ++ + Q++ IP ++ S LS R +
Sbjct: 48 SVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102
>pdb|2RII|X Chain X, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
pdb|2RII|Y Chain Y, Crystal Structure Of Human Peroxiredoxin I In Complex With
Sulfiredoxin
Length = 110
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 43 SIPLIDLQVLDGPRRLDIIKQIGQACQHDGFFQVKNHGIPETIINSMLSITRAFF 97
S+P ID+ + G + D G ++ + Q++ IP ++ S LS R +
Sbjct: 48 SVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,884
Number of Sequences: 62578
Number of extensions: 431281
Number of successful extensions: 941
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 26
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)