Query 020128
Match_columns 330
No_of_seqs 110 out of 128
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 12:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 81.9 0.84 2.9E-05 41.9 3.3 48 111-160 88-136 (276)
2 1g9r_A Glycosyl transferase; a 56.5 3.5 0.00012 38.1 1.2 108 111-249 84-197 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 34.5 30 0.001 31.7 3.7 52 92-144 57-117 (263)
4 1ll2_A Glycogenin-1; protein-s 26.1 28 0.00097 32.7 2.1 34 110-144 83-116 (333)
5 2fc9_A NCL protein; structure 24.8 1E+02 0.0034 22.7 4.6 51 8-71 16-67 (101)
6 2hgm_A HNRPF protein, heteroge 22.0 2.5E+02 0.0087 22.4 6.9 59 8-75 43-103 (126)
7 1x4c_A Splicing factor, argini 21.1 2E+02 0.007 21.4 5.9 51 8-74 16-68 (108)
8 2mss_A Protein (musashi1); RNA 19.1 2.1E+02 0.007 19.5 5.1 53 11-72 3-56 (75)
9 3d2w_A TAR DNA-binding protein 18.1 2.9E+02 0.0098 20.0 6.2 49 11-73 15-64 (89)
10 2lxi_A RNA-binding protein 10; 17.5 1.9E+02 0.0065 21.1 4.8 58 9-74 3-62 (91)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=81.92 E-value=0.84 Score=41.95 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred cceeeccCCCC-CCCEEEEEecceeEeeCHHHHHHHHHhcCCCeEEEecCC
Q 020128 111 VPKILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHK 160 (330)
Q Consensus 111 ~pKll~HrlFp-~y~ySIWID~ki~L~~Dp~~lle~~l~r~~~~~Ai~~Hp 160 (330)
+.|++...+|| +++--||+|+-+.+.+|+.+|.+.-+ ++..+|+..+.
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEec
Confidence 45888889999 69999999999999999999887433 45678888764
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=56.50 E-value=3.5 Score=38.09 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=67.3
Q ss_pred cceeeccCCCCCCCEEEEEecceeEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhccCChhHHHHHHHHH
Q 020128 111 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 190 (330)
Q Consensus 111 ~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle~~l~r~~~~~Ai~~Hp~R~cvyEEA~a~~~~~K~~~~~I~~Qm~~Y 190 (330)
+.|++...+||+++-.||+|+-+.+.+|+..|.+.-+ ++..+|+..+ | +.+ .. . ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~---~-------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQ---E-------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TS---T-------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hh---H-------HHH
Confidence 4577778888999999999999999999998887433 4566777653 2 111 00 0 112
Q ss_pred HHcCCCCcccCCCCCCCCCcccEEecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHH
Q 020128 191 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVY 249 (330)
Q Consensus 191 ~~eGlp~~~~~k~~~s~l~E~~vIiR~H~-----~~~nlf~clWfnEv~-rfs~RDQLSF~Yv~~ 249 (330)
..-|+++ ....+-+||++=+-. ...+.+ -.|.++.. ++.--||=-++.++.
T Consensus 141 ~~~~~~~-------~~~yfNsGv~linl~~~r~~~~~~~~-~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD-------GEYYFNAGVLLINLKKWRRHDIFKMS-SEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT-------TSCCEEEEEEEECHHHHTTSCHHHHH-HHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC-------CCceEeeeeeeeeHHHHHhcchHHHH-HHHHHhccCcCccCCcCHHHHHHc
Confidence 3456653 234678888874432 122222 23444432 345579988887765
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=34.46 E-value=30 Score=31.73 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=37.7
Q ss_pred eEEEEcCCCCC---------CCccccCCcceeeccCCCCCCCEEEEEecceeEeeCHHHHHH
Q 020128 92 WRLILLKHPPY---------DEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 144 (330)
Q Consensus 92 WrIV~v~~~~y---------~d~rrn~r~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle 144 (330)
.+++.|+.... ..++...-+.|++.-++. +|+--||+|+-+.+.+|+..|++
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 46777764332 223334457799999875 69999999999999999766654
No 4
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=26.13 E-value=28 Score=32.70 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred CcceeeccCCCCCCCEEEEEecceeEeeCHHHHHH
Q 020128 110 KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 144 (330)
Q Consensus 110 r~pKll~HrlFp~y~ySIWID~ki~L~~Dp~~lle 144 (330)
-+.|++...| ++|+-.||+|+-+.+.+|+..|.+
T Consensus 83 t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 83 TLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp HHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred HHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 3668888875 999999999999999999877665
No 5
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.78 E-value=1e+02 Score=22.67 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=32.3
Q ss_pred eeeeeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHH
Q 020128 8 HCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 71 (330)
Q Consensus 8 ~cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~ 71 (330)
.+=||.|-..++++.|++.+ +++. .++-+.... .....+||+-|.|....+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g------------~v~~~~~~~-g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKAT------------FIKVPQNQN-GKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCS------------EEECCBCSS-SCBCSEEEEECSSHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC------------EEEEEECCC-CCEeeEEEEEECCHHHHH
Confidence 45678887889999998876 3332 222222211 122679999999977654
No 6
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=21.99 E-value=2.5e+02 Score=22.41 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=37.2
Q ss_pred eeeeeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhH-HHHhh
Q 020128 8 HCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIRK 75 (330)
Q Consensus 8 ~cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~-~~l~~ 75 (330)
.+=||.|=.++++|.|++.+ ++|.|+..++.+ +..+.+-+ ..++|+-|.+.... ++|+.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i-----~~d~~Grs----rGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL-----PVDPEGKI----TGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEEC-----CCCSSSSS----CSEEEEEESSTTHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEE-----EECCCCCC----ceEEEEEECCHHHHHHHHHH
Confidence 45688888899999998765 778655223321 11222222 67899999887655 34443
No 7
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.08 E-value=2e+02 Score=21.41 Aligned_cols=51 Identities=10% Similarity=-0.017 Sum_probs=34.2
Q ss_pred eeeeeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhH-HHHh
Q 020128 8 HCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIR 74 (330)
Q Consensus 8 ~cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~-~~l~ 74 (330)
.+=||.|-.+++++.|++.+ +++.-|+..-|.-+ .+||+-|.+.... ++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------------TEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------------CEEEEEECCHHHHHHHHH
Confidence 45688888889999998876 56654444444322 5789999996655 3444
No 8
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=19.15 E-value=2.1e+02 Score=19.52 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=30.4
Q ss_pred eeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHHH
Q 020128 11 FMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKF 72 (330)
Q Consensus 11 f~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~~ 72 (330)
|+.|-..++++.|+..+ +++. .-..+.-+..-.......+||+-|.|....+.
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G---------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFG---------KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 56 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTS---------CCSEECCCBCSSSTTSCBEEEEECSCHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhcC---------CEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 56666778899887765 4442 22222222221111226789999999766543
No 9
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=18.08 E-value=2.9e+02 Score=20.04 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=32.8
Q ss_pred eeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHHHH
Q 020128 11 FMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKFI 73 (330)
Q Consensus 11 f~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~~l 73 (330)
|+.+-.++++|+|++.+ +++.-|+---|.- | + ..++|+-|.|....+.+
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--~-----------s-rGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--P-----------F-RAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEECCS--S-----------C-CSEEEEEESCHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEEEee--C-----------C-CCEEEEEECCHHHHHHH
Confidence 66677789999998765 6665443322221 1 2 67899999998877643
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=17.52 E-value=1.9e+02 Score=21.09 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=35.0
Q ss_pred eeeeeCCCCCCChhcHHHH-hcCCEEEEEeeecCCCCCCCCCCCCccccccEEEEEEeehhhHH-HHh
Q 020128 9 CGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK-FIR 74 (330)
Q Consensus 9 cgf~~~~g~~i~~~d~~~m-~~ckiVVyTaIFG~YD~L~~P~~i~~~~~~~vCF~mF~D~~t~~-~l~ 74 (330)
+=|++|=.++++|+|+..+ +++.. .-..++-+..-.......+||+-|.+....+ +++
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~--------~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGV--------QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTC--------CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC--------EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 4588888889999999865 44421 1222333322111222689999999976653 444
Done!