BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020129
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y0Z|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|1Y0Z|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g21360
pdb|2Q4A|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
pdb|2Q4A|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g21360
Length = 330
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/330 (73%), Positives = 285/330 (86%), Gaps = 9/330 (2%)
Query: 5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60
+E IPQQ++Y S PFP+V+SP A+ ++ + ++TQK +LDSLL ++
Sbjct: 6 LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61
Query: 61 GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
G+VLFRGF V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 62 GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120
Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
HEMAQV EFPSKLFF+CE+EP GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180
Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
LGE DDPSSPIGRGWKSTFLT DK++AE+RA LGMKLEW EDGG KT+MGPIPAIKYDE
Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 240
Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+
Sbjct: 241 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 300
Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 301 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330
>pdb|1DRT|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And Proclavaminic Acid
pdb|1DRY|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii), 2- Oxoglutarate And N-Alpha-L-Acetyl Arginine
pdb|1DS0|A Chain A, Crystal Structure Of Clavaminate Synthase
pdb|1DS1|A Chain A, Crystal Structure Of Clavaminate Synthase In Complex With
Fe(Ii) And 2-Oxoglutarate
pdb|1GVG|A Chain A, Crystal Structure Of Clavaminate Synthase With Nitric
Oxide
Length = 324
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 289 LEEESVAIPWQKGDVLLIDNWAVLHARRSFNP 320
L+E + A+ + GD+L++DN+ HAR F+P
Sbjct: 255 LDEVTEAVYLEPGDLLIVDNFRTTHARTPFSP 286
>pdb|3N6W|A Chain A, Crystal Structure Of Human Gamma-Butyrobetaine Hydroxylase
Length = 403
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 301 GDVLLIDNWAVLHARRSFNPPRRI 324
GDV+ DNW +LH RRS+ I
Sbjct: 351 GDVITFDNWRLLHGRRSYEAGTEI 374
>pdb|3MS5|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
pdb|3O2G|A Chain A, Crystal Structure Of Human
Gamma-Butyrobetaine,2-Oxoglutarate Dioxygenase 1 (Bbox1)
Length = 388
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 301 GDVLLIDNWAVLHARRSFNPPRRI 324
GDV+ DNW +LH RRS+ I
Sbjct: 336 GDVITFDNWRLLHGRRSYEAGTEI 359
>pdb|1NX8|A Chain A, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|B Chain B, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
pdb|1NX8|C Chain C, Structure Of Carbapenem Synthase (Carc) Complexed With
N-Acetyl Proline
Length = 273
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 298 WQKGDVLLIDNWAVLHARRSFN 319
W+ GD+L++DN V+H R FN
Sbjct: 236 WEDGDLLIMDNRRVIHEREEFN 257
>pdb|4IFQ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nup192,
Residues 2 To 960 [scnup192(2-960)]
Length = 970
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 52 FLDSLLLKAGSVLFRGFDDVKT--AKEFNDVVEAFGYEELPYVGGA 95
FL SLL GSV ++ +DVK+ +K F+DV+ F P VG A
Sbjct: 610 FLSSLLTLVGSVTYQVDEDVKSSLSKVFSDVLFEFTKINTPLVGAA 655
>pdb|1NX4|A Chain A, The Crystal Structure Of Carbapenem Synthase (Carc)
pdb|1NX4|B Chain B, The Crystal Structure Of Carbapenem Synthase (Carc)
pdb|1NX4|C Chain C, The Crystal Structure Of Carbapenem Synthase (Carc)
Length = 273
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 298 WQKGDVLLIDNWAVLHARRSFN 319
W+ GD+L+ DN V+H R FN
Sbjct: 236 WEDGDLLIXDNRRVIHEREEFN 257
>pdb|2WBQ|A Chain A, Crystal Structure Of Vioc In Complex With (2s,3s)-
Hydroxyarginine
Length = 358
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 300 KGDVLLIDNWAVLHARRSFNP 320
+GDV IDN +H RR+F P
Sbjct: 303 QGDVAFIDNRRAVHGRRAFQP 323
>pdb|2WBO|A Chain A, Crystal Structure Of Vioc In Complex With L-Arginine
pdb|2WBP|A Chain A, Crystal Structure Of Vioc In Complex With Fe(Ii), (2s,3s)-
Hydroxyarginine, And Succinate
Length = 358
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 300 KGDVLLIDNWAVLHARRSFNP 320
+GDV IDN +H RR+F P
Sbjct: 303 QGDVAFIDNRRAVHGRRAFQP 323
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRV 180
+VYER +H+Y P +V+ LE GL+ + +
Sbjct: 459 VVYERHRHRYEVNPKYVDILEDAGLVVSGI 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,864,729
Number of Sequences: 62578
Number of extensions: 476560
Number of successful extensions: 1112
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 20
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)