BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020129
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIG0|Y3136_ARATH Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana
GN=At3g21360 PE=1 SV=1
Length = 330
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/330 (73%), Positives = 285/330 (86%), Gaps = 9/330 (2%)
Query: 5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPAT----TATVSRLAEKVRTQKPFLDSLLLKA 60
+E IPQQ++Y S PFP+V+SP A+ ++ + ++TQK +LDSLL ++
Sbjct: 6 LVETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHES 61
Query: 61 GSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFH 120
G+VLFRGF V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFH
Sbjct: 62 GAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFH 120
Query: 121 HEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRV 180
HEMAQV EFPSKLFF+CE+EP GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RV
Sbjct: 121 HEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRV 180
Query: 181 LGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDE 240
LGE DDPSSPIGRGWKSTFLT DK++AE+RA LGMKLEW EDGG KT+MGPIPAIKYDE
Sbjct: 181 LGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDE 240
Query: 241 SRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQK 300
SR RK+WFNSMVAAYTGW+D RNDP KAVTFG+GKPLPADIVHDCL ILEEE VA+PWQ+
Sbjct: 241 SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQR 300
Query: 301 GDVLLIDNWAVLHARRSFNPPRRILASLCK 330
GDVLLIDNWAVLH+RR F+PPRR+LASLCK
Sbjct: 301 GDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330
>sp|Q9Z8U8|PYRG_CHLPN CTP synthase OS=Chlamydia pneumoniae GN=pyrG PE=3 SV=2
Length = 537
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRVLG 182
C ++PGS S ++ ER +H+Y PD+++ LE HGL R++G
Sbjct: 436 CLLKPGSKAHKAYNESSLIQERHRHRYEVNPDYIQSLEDHGL---RIVG 481
>sp|Q6L1K7|PYRG_PICTO CTP synthase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790
/ JCM 10055 / NBRC 100828) GN=pyrG PE=3 SV=1
Length = 534
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 149 IVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRVLGEK 184
I S I+YER +H+Y PD++E+LE G+I++ EK
Sbjct: 438 IYKSDIIYERHRHRYEVNPDYIERLEDSGVIFSGTDDEK 476
>sp|C5A7F1|PYRG_THEGJ CTP synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM
11827 / EJ3) GN=pyrG PE=3 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
IVYER +H++ PD++E+LE GL+++ + G+ +
Sbjct: 451 IVYERHRHRWEVNPDYIEKLESAGLVFSGIAGDDE 485
>sp|Q5JGF1|PYRG_PYRKO CTP synthase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=pyrG PE=3 SV=1
Length = 533
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
IVYER +H++ PD+VE+ E+ GL+++ + G+ +
Sbjct: 451 IVYERHRHRWEVNPDYVEKFEEAGLVFSGIAGDDE 485
>sp|Q91ZE0|TMLH_MOUSE Trimethyllysine dioxygenase, mitochondrial OS=Mus musculus GN=Tmlhe
PE=2 SV=2
Length = 421
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 291 EESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILAS 327
E + + + G VL IDNW VLH R SF R++
Sbjct: 367 ENELWVKLKPGKVLFIDNWRVLHGRESFTGYRQLCGC 403
>sp|Q91ZW6|TMLH_RAT Trimethyllysine dioxygenase, mitochondrial OS=Rattus norvegicus
GN=Tmlhe PE=1 SV=2
Length = 421
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 291 EESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILAS 327
E + + + G VL IDNW VLH R SF R++
Sbjct: 367 ENELWVKLKPGKVLFIDNWRVLHGRESFTGYRQLCGC 403
>sp|B2GFD7|ISPE_LACF3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Lactobacillus
fermentum (strain NBRC 3956 / LMG 18251) GN=ispE PE=3
SV=1
Length = 283
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 120 HHEMAQ-VPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPD-FVEQLEQHGLIY 177
H E+ + +P FP ++ +P TP++L I YER+ H D VE +++
Sbjct: 152 HGEIVEPLPAFPH--YWVVIAKPKLSVSTPVILRQINYERLVHPQTDQLVEAIKE----- 204
Query: 178 TRVLGEKDDPSSPIGRGWKSTFLTEDKSIA--EERAARLGMKLEWMEDGGVKTIMGPIPA 235
G+ + +G ++ + IA +ER +LG + M G A
Sbjct: 205 ----GKFQESFQYMGNALEAVTMEAHPEIARLKERMQKLGADVAQMSGTGPSVF-----A 255
Query: 236 IKYDESRQRKIWFNSM 251
+ + ESR ++I +NS+
Sbjct: 256 LCHAESRAKRI-YNSL 270
>sp|Q0VC74|TMLH_BOVIN Trimethyllysine dioxygenase, mitochondrial OS=Bos taurus GN=TMLHE
PE=2 SV=1
Length = 421
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 301 GDVLLIDNWAVLHARRSFNPPRRILAS 327
G VL IDNW VLH R SF R++
Sbjct: 377 GKVLFIDNWRVLHGRESFTGYRQLCGC 403
>sp|B5YE95|PGK_DICT6 Phosphoglycerate kinase OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=pgk PE=3 SV=1
Length = 396
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 233 IPAIKYDESRQRKIWFNSMVAAYTGWKDD-RNDPV-KAVTFGNGKPLPADIVHDCLNILE 290
+P IKY R K+ S + G++DD R DPV K ++ GKP+ ++DC+
Sbjct: 44 LPTIKYLIDRGAKVILVSHLGRPKGFQDDLRLDPVAKRLSELLGKPVKK--LNDCIGEEV 101
Query: 291 EESVAIPWQKGDVLLIDNWAVLHARRSFNP 320
E+ ++ ++GDV+L++N + +P
Sbjct: 102 EKEIS-NMKEGDVVLLENIRFYKEEEANDP 130
>sp|Q9N4K0|MOS1_CAEEL Mitochondrial inner membrane organizing system protein F54A3.5
OS=Caenorhabditis elegans GN=F54A3.5 PE=3 SV=2
Length = 105
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 224 GGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPA 279
GGV +G + ++ + +SR IWF S V TGW + R+D +GK +PA
Sbjct: 34 GGVA--IGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCRHDFASPYVL-HGKRVPA 86
>sp|Q05582|CAS2_STRC2 Clavaminate synthase 2 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs2 PE=1 SV=3
Length = 325
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 289 LEEESVAIPWQKGDVLLIDNWAVLHARRSFNP 320
L++ +V + GDVL+IDN+ HAR F+P
Sbjct: 256 LDDVTVGVKLVPGDVLIIDNFRTTHARTPFSP 287
>sp|Q59321|PYRG_CHLTR CTP synthase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=pyrG
PE=1 SV=2
Length = 539
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRV--LGE 183
C + PGS + + +V ER +H+Y P ++E+LE+HGL V LGE
Sbjct: 436 CRIAPGSLA-SAAYKTDLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGE 486
>sp|B0BBG3|PYRG_CHLTB CTP synthase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=pyrG PE=3 SV=1
Length = 539
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRV--LGE 183
C + PGS + + +V ER +H+Y P ++E+LE+HGL V LGE
Sbjct: 436 CRIAPGSLA-SAAYKTDLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGE 486
>sp|B0B9T3|PYRG_CHLT2 CTP synthase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu /
ATCC VR-902B) GN=pyrG PE=3 SV=1
Length = 539
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRV--LGE 183
C + PGS + + +V ER +H+Y P ++E+LE+HGL V LGE
Sbjct: 436 CRIAPGSLA-SAAYKTDLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGE 486
>sp|Q3KMH9|PYRG_CHLTA CTP synthase OS=Chlamydia trachomatis serovar A (strain HAR-13 /
ATCC VR-571B) GN=pyrG PE=3 SV=1
Length = 539
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKY---PDFVEQLEQHGLIYTRV--LGE 183
C + PGS + + +V ER +H+Y P ++E+LE+HGL V LGE
Sbjct: 436 CRIAPGSLA-SAAYKTDLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGE 486
>sp|C6A390|Y1029_THESM UPF0282 protein TSIB_1029 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=TSIB_1029 PE=3 SV=1
Length = 304
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 149 IVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDP 187
I+ H++ ++ +YP+F+EQLE+ L + R L ++D P
Sbjct: 242 ILDHHLIRDK---RYPEFLEQLEKQALTFARFLKKEDRP 277
>sp|B6YTF0|PYRG_THEON CTP synthase OS=Thermococcus onnurineus (strain NA1) GN=pyrG PE=3
SV=1
Length = 533
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
++YER +H++ P+F+E+ E+ GL+++ V G+ +
Sbjct: 451 LIYERHRHRWEVNPEFIERFEKAGLVFSGVAGDDE 485
>sp|Q6FUD0|PYRG_CANGA CTP synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=URA7 PE=3 SV=1
Length = 578
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 3/27 (11%)
Query: 155 VYERMKHKY---PDFVEQLEQHGLIYT 178
V ER +H+Y P+F+E+LE+HGL++
Sbjct: 483 VEERHRHRYEINPNFIERLEEHGLMFV 509
>sp|O59456|PYRG_PYRHO CTP synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pyrG PE=3 SV=2
Length = 537
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
+VYER +H++ PD++E E+ GL+++ V G+ +
Sbjct: 451 LVYERHRHRWEVNPDYIEAFEKAGLVFSGVAGDDE 485
>sp|Q6ZW54|YQ046_HUMAN Putative uncharacterized protein FLJ41591 OS=Homo sapiens PE=2 SV=1
Length = 148
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 175 LIYTRVLGEKDDPSSPIGRGWKSTF 199
L R LG PS+P GRGWK+TF
Sbjct: 50 LSRGRALGSVSAPSTPRGRGWKATF 74
>sp|Q05581|CAS1_STRC2 Clavaminate synthase 1 OS=Streptomyces clavuligerus (strain ATCC
27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 /
NRRL 3585 / VKM Ac-602) GN=cs1 PE=1 SV=3
Length = 324
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 289 LEEESVAIPWQKGDVLLIDNWAVLHARRSFNP 320
L+E + A+ + GD+L++DN+ HAR F+P
Sbjct: 255 LDEVTEAVYLEPGDLLIVDNFRTTHARTPFSP 286
>sp|Q2GHT7|PYRG_EHRCR CTP synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=pyrG
PE=3 SV=1
Length = 532
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 137 CEVEPGSGGETPIVLSHIVYERMKHKYP---DFVEQLEQHGLIYT 178
C +E GS + I I++ER +H+Y + + LEQHGLI+T
Sbjct: 438 CYLESGSKIFS-IYQQSIIHERRRHRYAFNLQYKDLLEQHGLIFT 481
>sp|Q8TZY6|PYRG_PYRFU CTP synthase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=pyrG PE=3 SV=2
Length = 537
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
+VYER +H++ P+++E LE+ GL+++ V G+ +
Sbjct: 451 LVYERHRHRWEVNPNYIEALEKAGLVFSGVAGDDE 485
>sp|A0QSH6|Y1482_MYCS2 Putative S-adenosyl-L-methionine-dependent methyltransferase
MSMEG_1482/MSMEI_1446 OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=MSMEG_1482 PE=3 SV=1
Length = 304
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 156 YERMKHKYPDFVEQLEQHG--LIYTRV--LGEKDDPSSPI-GRGWKSTFLTEDK 204
+E + + DF ++ HG L +T + LG++ D SS + G GWK+T +T D+
Sbjct: 225 HEEIAARMKDFSDRWRAHGFDLDFTELVFLGDRADVSSYLQGHGWKTTSMTSDE 278
>sp|Q9V1S2|PYRG_PYRAB CTP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pyrG PE=3
SV=1
Length = 537
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 154 IVYERMKHKY---PDFVEQLEQHGLIYTRVLGEKD 185
+VYER +H++ PD++E E+ GL+++ + G+ +
Sbjct: 451 LVYERHRHRWEVNPDYIEAFEKAGLVFSGIAGDDE 485
>sp|Q5R5D8|BODG_PONAB Gamma-butyrobetaine dioxygenase OS=Pongo abelii GN=BBOX1 PE=2 SV=1
Length = 387
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 301 GDVLLIDNWAVLHARRSFNPPRRI 324
GDV+ DNW +LH RRS+ I
Sbjct: 335 GDVITFDNWRLLHGRRSYEAGTEI 358
>sp|O75936|BODG_HUMAN Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1
Length = 387
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 301 GDVLLIDNWAVLHARRSFNPPRRI 324
GDV+ DNW +LH RRS+ I
Sbjct: 335 GDVITFDNWRLLHGRRSYEAGTEI 358
>sp|P47054|NU192_YEAST Nucleoporin NUP192 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP192 PE=1 SV=1
Length = 1683
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 52 FLDSLLLKAGSVLFRGFDDVKT--AKEFNDVVEAFGYEELPYVGGA 95
FL SLL GSV ++ +DVK+ +K F+DV+ F P VG A
Sbjct: 608 FLSSLLTLVGSVTYQVDEDVKSSLSKVFSDVLFEFTKINTPLVGAA 653
>sp|P54975|CRTB_PARSN Phytoene synthase OS=Paracoccus sp. (strain N81106 / MBIC 01143)
GN=crtB PE=3 SV=2
Length = 304
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 174 GLIYTRVLGEKDDP----SSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTI 229
G++ RV+G +DDP + +G ++ T + D I + R R + +W++ G + +
Sbjct: 139 GVMMARVMGVRDDPVLDRACDLGLAFQLTNIARD-VIDDARIGRCYLPGDWLDQAGAR-V 196
Query: 230 MGPIPA 235
GP+P+
Sbjct: 197 DGPVPS 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,657,619
Number of Sequences: 539616
Number of extensions: 6000244
Number of successful extensions: 13971
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13949
Number of HSP's gapped (non-prelim): 39
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)