Query 020129
Match_columns 330
No_of_seqs 149 out of 1342
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00139 hypothetical protein; 100.0 1.5E-68 3.2E-73 494.5 31.5 312 5-330 7-320 (320)
2 PRK09553 tauD taurine dioxygen 100.0 8.2E-39 1.8E-43 292.8 13.8 241 42-328 21-269 (277)
3 TIGR02410 carnitine_TMLD trime 100.0 6.1E-34 1.3E-38 269.6 20.2 229 49-329 116-348 (362)
4 TIGR02409 carnitine_bodg gamma 100.0 1.1E-33 2.3E-38 268.7 19.7 221 50-329 125-352 (366)
5 PF02668 TauD: Taurine catabol 100.0 1.5E-33 3.3E-38 255.0 14.0 226 44-328 20-257 (258)
6 cd00250 CAS_like Clavaminic ac 100.0 4.9E-31 1.1E-35 239.9 21.1 219 50-328 34-257 (262)
7 COG2175 TauD Probable taurine 100.0 5.1E-30 1.1E-34 231.9 16.6 234 48-327 30-273 (286)
8 KOG3888 Gamma-butyrobetaine,2- 99.9 1.5E-26 3.4E-31 208.2 16.3 239 39-330 143-388 (407)
9 KOG3889 Predicted gamma-butyro 99.9 6.5E-23 1.4E-27 178.7 11.6 222 50-328 128-354 (371)
10 PRK02963 carbon starvation ind 99.9 4.2E-21 9.1E-26 174.2 15.5 195 58-320 84-293 (316)
11 PF08943 CsiD: CsiD; InterPro 98.7 4.6E-08 1E-12 85.8 8.0 201 58-325 71-290 (297)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 76.5 1 2.2E-05 34.0 0.5 31 298-328 66-97 (100)
13 smart00702 P4Hc Prolyl 4-hydro 72.5 3.6 7.8E-05 34.7 3.0 36 293-328 138-176 (178)
14 PF12851 Tet_JBP: Oxygenase do 67.1 6.1 0.00013 33.4 3.2 27 293-319 127-153 (171)
15 COG4340 Uncharacterized protei 53.8 8.3 0.00018 32.9 1.7 26 294-319 175-200 (226)
16 PF06940 DUF1287: Domain of un 53.7 7.9 0.00017 32.2 1.5 12 296-307 105-116 (164)
17 smart00702 P4Hc Prolyl 4-hydro 50.6 16 0.00034 30.7 3.0 40 114-153 93-134 (178)
18 TIGR00113 queA S-adenosylmethi 47.1 11 0.00024 35.5 1.6 20 298-317 49-68 (344)
19 PRK00147 queA S-adenosylmethio 42.6 15 0.00033 34.6 1.8 21 297-317 49-69 (342)
20 PRK01424 S-adenosylmethionine: 41.3 16 0.00034 34.6 1.6 22 297-318 46-67 (366)
21 PF02547 Queuosine_synth: Queu 40.9 12 0.00026 35.3 0.8 22 297-318 48-69 (341)
22 PRK05467 Fe(II)-dependent oxyg 40.6 26 0.00057 31.1 2.9 40 113-152 89-137 (226)
23 PF05721 PhyH: Phytanoyl-CoA d 39.1 31 0.00066 28.9 3.1 32 291-323 177-210 (211)
24 TIGR02408 ectoine_ThpD ectoine 38.2 51 0.0011 30.0 4.5 29 53-84 21-49 (277)
25 COG0809 QueA S-adenosylmethion 37.9 20 0.00043 33.6 1.7 18 298-315 50-67 (348)
26 PF13759 2OG-FeII_Oxy_5: Putat 34.6 33 0.00072 25.9 2.3 36 292-328 64-100 (101)
27 PF05118 Asp_Arg_Hydrox: Aspar 34.5 27 0.00058 29.2 1.9 32 294-326 124-156 (163)
28 KOG0464 Elongation factor G [T 34.5 25 0.00055 34.0 1.9 40 128-170 452-491 (753)
29 PHA02813 hypothetical protein; 34.1 31 0.00067 32.5 2.3 40 113-152 103-144 (354)
30 PF08285 DPM3: Dolichol-phosph 32.8 30 0.00066 26.0 1.7 43 134-176 47-90 (91)
31 PF14226 DIOX_N: non-haem diox 32.5 1.4E+02 0.0031 22.6 5.7 37 46-84 13-52 (116)
32 PLN00052 prolyl 4-hydroxylase; 31.5 44 0.00095 31.2 2.9 36 292-327 204-248 (310)
33 PF12990 DUF3874: Domain of un 29.3 22 0.00048 25.5 0.5 35 131-165 7-41 (73)
34 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 27.9 30 0.00065 29.9 1.1 33 294-326 153-192 (195)
35 PF07892 DUF1667: Protein of u 25.8 70 0.0015 23.6 2.5 35 273-307 36-70 (82)
36 PRK05467 Fe(II)-dependent oxyg 25.6 59 0.0013 28.9 2.6 34 294-328 141-175 (226)
37 PF00446 GnRH: Gonadotropin-re 25.4 35 0.00075 14.7 0.5 8 294-301 3-10 (10)
38 COG3862 Uncharacterized protei 24.7 1.2E+02 0.0027 23.3 3.8 38 270-307 63-100 (117)
39 PF00877 NLPC_P60: NlpC/P60 fa 24.5 45 0.00097 25.2 1.4 13 296-308 50-62 (105)
40 KOG4841 Dolichol-phosphate man 23.4 53 0.0011 24.3 1.5 61 115-176 33-94 (95)
41 PHA02869 C4L/C10L-like gene fa 21.5 79 0.0017 30.5 2.6 39 113-151 112-152 (418)
42 TIGR02219 phage_NlpC_fam putat 20.9 69 0.0015 25.7 1.9 11 297-307 76-86 (134)
43 PRK10838 spr outer membrane li 20.9 69 0.0015 27.6 2.0 11 297-307 128-138 (190)
44 PF09673 TrbC_Ftype: Type-F co 20.5 2.5E+02 0.0055 21.7 5.0 32 52-84 16-47 (113)
45 PF13661 2OG-FeII_Oxy_4: 2OG-F 20.3 1.1E+02 0.0024 21.3 2.7 39 113-151 20-64 (70)
46 PRK10664 transcriptional regul 20.3 1.7E+02 0.0037 21.7 3.8 32 38-69 17-48 (90)
No 1
>PLN00139 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-68 Score=494.55 Aligned_cols=312 Identities=41% Similarity=0.752 Sum_probs=278.9
Q ss_pred ceeecCCCccccCCCCCCCCCceEEecCCCCCCchHHHHHHHhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHh
Q 020129 5 FIEIKIPQQRNYNNINNSCPFPSVLSPNPATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF 84 (330)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~f 84 (330)
|..-++++++..+ +.++|+||.|......+.+++.+|++..+++|+++|.+||+|+||||+ +.++++|.+|+++|
T Consensus 7 ~~~~~~~~~~~~~----~~~~p~vi~~~~~~~~~~~~l~~~~~~~~~~l~~~L~~hGavlfRG~~-i~~~~~f~~~a~~f 81 (320)
T PLN00139 7 FKVGKCEGQKVVD----GETMPLVLQPPEPNKSDTESLVSALKQNKDWFEQMLIKNSAVLLRGFD-VKNAEDFNDIIEAF 81 (320)
T ss_pred eeeccccCcccCC----CCCCCeEEecCcccccchhhHHHHHHHHHHHHHHHHHHCCEEEECCCC-CCCHHHHHHHHHHh
Confidence 4555678888777 889999999987433466679999999999999999999999999999 77899999999999
Q ss_pred CCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCCCceEEecccccCCCCCccccccHHHHHHHhhhhCc
Q 020129 85 GYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYP 164 (330)
Q Consensus 85 G~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~p 164 (330)
|....+|.+ ..+|..+.+.|++++++|+...|+||+|++|.+.||.+++|||+++|+.||+|+|||+++||+.|+++.|
T Consensus 82 g~~~~~y~~-~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~GGeT~~aD~~~v~~~L~~~~p 160 (320)
T PLN00139 82 GWDDIRYVG-PAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPEGGQTPFVPSFRVTERMLEEFP 160 (320)
T ss_pred CccccccCC-CCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCCCCCCeeecHHHHHHHhhhhCH
Confidence 998778887 4678878889999889988889999999999999999999999999999999999999999999998889
Q ss_pred hHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHHHHHHhCCcEEEecCCceEEEE-eeeceEEec-CCC
Q 020129 165 DFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLGMKLEWMEDGGVKTIM-GPIPAIKYD-ESR 242 (330)
Q Consensus 165 el~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~P~v~~h-p~T 242 (330)
+++++|+++||+|.++++......++.|++|+++|+|+|++|||++|++.|++++|++|| .+.+. +..|+++.| |.|
T Consensus 161 ~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~dg-~l~~~~~~~~~~~~~~~~t 239 (320)
T PLN00139 161 EAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPNG-GVKTILGPRSLTKVFDGRK 239 (320)
T ss_pred HHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCCC-cEEEEEeeccceeccCCCC
Confidence 999999999999999887654334567799999999999999999999999999999998 54444 566777765 599
Q ss_pred CceEEEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHhhceeecccCCCCEEEEecccccccCCCCCCCc
Q 020129 243 QRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLIDNWAVLHARRSFNPPR 322 (330)
Q Consensus 243 G~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDvli~DN~~vlHgR~~f~g~R 322 (330)
|+++|||++..+|.. .+..++||||++|+.++|++|.+++++.++.++||+||||++||+++||||.||+|+|
T Consensus 240 g~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GDvl~iDN~~~~HGR~pf~g~R 312 (320)
T PLN00139 240 GRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGDVLFLDNLALLHGRRPSLPPR 312 (320)
T ss_pred CCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCCEEEEeChhhhcCCCCCCCCc
Confidence 999999999887642 2345789999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccC
Q 020129 323 RILASLCK 330 (330)
Q Consensus 323 ~il~~~~~ 330 (330)
||||+|++
T Consensus 313 rvlv~m~~ 320 (320)
T PLN00139 313 KVLVATCK 320 (320)
T ss_pred eEEEEecC
Confidence 99999985
No 2
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=100.00 E-value=8.2e-39 Score=292.75 Aligned_cols=241 Identities=19% Similarity=0.234 Sum_probs=165.6
Q ss_pred HHHH-HhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccc---cCCCCCCCCCc
Q 020129 42 LAEK-VRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVF---TANESPPDQKI 117 (330)
Q Consensus 42 ~~~~-~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~---~~~~~p~~~~l 117 (330)
|.++ .++.+++|+++|.+||+++||||+ + +++++.+|+++||.....+..+..++. +.|+ +++..+....
T Consensus 21 l~~~l~~~~~~~l~~~l~~~Gvlvfr~q~-l-~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~- 94 (277)
T PRK09553 21 LTRPLSDNQFEQLYHALLRHQVLFFRDQP-I-TPQQQRDLAARFGDLHIHPVYPHAEGV---PEIIVLDTHNDNPPDND- 94 (277)
T ss_pred cCCcCCHHHHHHHHHHHHHCCEEEECCCC-C-CHHHHHHHHHHhCCCccCCCCCCCCCC---CeEEEEeccCCCCCCCC-
Confidence 4444 456788999999999999999999 7 799999999999997633332222221 1222 2222233323
Q ss_pred ccccCCCCCCCCCceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCccc
Q 020129 118 PFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS 197 (330)
Q Consensus 118 ~~H~D~sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~ 197 (330)
.||+|++|.+.||.+++|||++.|+.||+|.|+|+++||+.|+ ++++++|++..+.|....... ..
T Consensus 95 ~wHtD~sy~~~pp~~~~L~~~~~p~~GG~T~fad~~~ay~~L~---~~~~~~l~~l~~~h~~~~~~~-----------~~ 160 (277)
T PRK09553 95 NWHTDVTFIETPPLGAILAAKQLPSTGGDTLWASGIAAYEALS---APFRQLLSGLTAEHDFRKSFP-----------EY 160 (277)
T ss_pred CCeecccCeeCCCceeEEEEEecCCCCCccHhhhHHHHHHhCC---HHHHHHhcCcEEEEcchhhcc-----------cc
Confidence 6999999999999999999999999999999999999999999 789999997777763111000 00
Q ss_pred ccccCChhHHHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceE-EEecchhhccCCCCCCCCCCcccccCCCCC
Q 020129 198 TFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI-WFNSMVAAYTGWKDDRNDPVKAVTFGNGKP 276 (330)
Q Consensus 198 ~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~-~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~ 276 (330)
.++..+ +....|.... .......||+|++||.||+++ |+|......+ .|-...
T Consensus 161 ~~~~~~-----------~~~~~~~~~~-~~~~~~~hPlVr~hp~tG~k~L~~n~~~~~~i--------------~gl~~~ 214 (277)
T PRK09553 161 KYRKTE-----------EEHQRWEEAV-AKNPPLLHPVVRTHPVSGRQALFVNEGFTTRI--------------VDLSEK 214 (277)
T ss_pred cccccc-----------cccccccccc-ccCCCCCCCeEEeCCCCCceeEEeccccccEe--------------CCCCHH
Confidence 000000 0000000000 001124589999999999998 5565443322 222334
Q ss_pred CCHHHHHHHHHHHhhc--eeecccCCCCEEEEecccccccCCCC-CCCceeeeec
Q 020129 277 LPADIVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSF-NPPRRILASL 328 (330)
Q Consensus 277 ~~~~~l~~l~~~~~~~--~~~~~W~~GDvli~DN~~vlHgR~~f-~g~R~il~~~ 328 (330)
.+.++|+.|.+++.+. .|+|+|++||+|||||+++||+++++ .+.+|++.+.
T Consensus 215 es~~ll~~L~~~~~~p~~~~~~~w~~GD~viwDNr~~~H~a~~~~~~~~R~~~R~ 269 (277)
T PRK09553 215 ESEALLGFLFAHITKPEFQVRWRWQPNDVAIWDNRVTQHYANADYLPQRRIMHRA 269 (277)
T ss_pred HHHHHHHHHHHHhcCcCeEEEEecCCCCEEEEcCcceeEecccCCCCCceEEEEE
Confidence 4678889998888764 59999999999999999999999865 4566666554
No 3
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=100.00 E-value=6.1e-34 Score=269.63 Aligned_cols=229 Identities=19% Similarity=0.241 Sum_probs=164.7
Q ss_pred hHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCC
Q 020129 49 QKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPE 128 (330)
Q Consensus 49 ~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~ 128 (330)
....+.++|.+||+++|||++ + +++++.+|+++||.......|+. ..+.......+...++..++||||++|.+.
T Consensus 116 ~l~~~l~~l~~~G~v~~~g~~-~-~~~~~~~~a~riG~~r~t~~g~~---~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~ 190 (362)
T TIGR02410 116 TLKSFSKNIYKYGFTFVDNVP-V-TPEATEKLCERISIIRPTHYGGF---WDFTSDLSKNDTAYTSLAIDMHTDGTYWDE 190 (362)
T ss_pred HHHHHHHHHHhhCEEEEcCCC-C-CHHHHHHHHHHhccceecCCCCe---EEEEecCCCcccccccCCccccccCCCCCC
Confidence 345566679999999999999 5 99999999999999754444421 111111111223344567899999999999
Q ss_pred CCceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHH
Q 020129 129 FPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAE 208 (330)
Q Consensus 129 ~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~ 208 (330)
||++++|+|+++|..||+|.|+|+..||+.|++++|+.++.|.+..+.|.......
T Consensus 191 pp~~~~L~c~~~~~~GG~t~~~d~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~~------------------------ 246 (362)
T TIGR02410 191 TPGLQLFHCLTHDGTGGETVLVDGFYCAEQLRKEAPEDFELLTKVPIPHHYSGESD------------------------ 246 (362)
T ss_pred CCcceeEeeeecCCCCCceeeeeHHHHHHHHhhhChHHHHHHhcCccceEEccCcC------------------------
Confidence 99999999999999999999999999999999999999999997666553210000
Q ss_pred HHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceEEEecchhhccCCCCCCCCCCcccccCCCC--CCCHHHHHHHH
Q 020129 209 ERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGK--PLPADIVHDCL 286 (330)
Q Consensus 209 ~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~--~~~~~~l~~l~ 286 (330)
.. .......+|+|+.||.+|+...++........ ...+.++..+ +...++|+.|.
T Consensus 247 --------------~~-~~~~~~~~Pvi~~~p~~G~~~~ir~~~~~r~~--------~~~~~~~~~~~~~~~~~Al~~l~ 303 (362)
T TIGR02410 247 --------------SV-FIHPDYPQPVLTLDPSTGELTQIRWNNSDRAV--------MDCLNWSSPYDVPKFYKAIRRFN 303 (362)
T ss_pred --------------ce-eeeeccCCCEEEecCCCCcEEEEEcCCCcccc--------cccCCCCCHHHHHHHHHHHHHHH
Confidence 00 01112357999999999998654332111110 0001111111 11257888888
Q ss_pred HHHhh--ceeecccCCCCEEEEecccccccCCCCCCCceeeeecc
Q 020129 287 NILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASLC 329 (330)
Q Consensus 287 ~~~~~--~~~~~~W~~GDvli~DN~~vlHgR~~f~g~R~il~~~~ 329 (330)
+++.+ +.+.|+|+|||+|||||+|+||||++|+|.|.+-.+..
T Consensus 304 ~~~~~p~~~~~~~l~pGd~vi~DN~rvLHgRtaf~g~R~L~G~Y~ 348 (362)
T TIGR02410 304 KIITDPDNEIEFKLRPGTVLIFDNWRVLHSRTSFTGYRRMCGCYL 348 (362)
T ss_pred HHhcChhcEEEEEcCCccEEEEeeEEEeecCCCcCCceEEEEEEE
Confidence 88876 57999999999999999999999999999988877654
No 4
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=100.00 E-value=1.1e-33 Score=268.74 Aligned_cols=221 Identities=18% Similarity=0.239 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCC
Q 020129 50 KPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEF 129 (330)
Q Consensus 50 ~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~ 129 (330)
...+.++|.+||+++|||++ + +++++.+|+++||....+..|.. ..+..++...+..++...++||+|++|.+.|
T Consensus 125 ~~~~~~~l~~~G~v~~rg~~-~-~~~~~~~~~~~~G~~~~~~~g~~---~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~p 199 (366)
T TIGR02409 125 LLDWLSAVRDVGIAVLKGAP-T-KPGAVEKLGKRIGFIRETNYGLL---FEVRLKADANNLAYTNGGLPFHTDNPYRDHP 199 (366)
T ss_pred HHHHHHHHHhccEEEEeCCC-C-CHHHHHHHHHHhccccccCCCCe---EEEEecCCccccccccccccccccCCccCCC
Confidence 44566679999999999999 6 99999999999999754444421 1111111111223345678999999999999
Q ss_pred CceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHH
Q 020129 130 PSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEE 209 (330)
Q Consensus 130 P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~ 209 (330)
|++++|+|+++|..||+|.|+|+.+||+.|+++.|+.++.|....+.|... ..
T Consensus 200 P~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~~~~p~~~~~L~~~~~~~~~~--~~------------------------- 252 (366)
T TIGR02409 200 PGLQLLHCLESTVEGGDSLFVDGFAVAEALRVENPEAFRILTSTPVEFREE--GD------------------------- 252 (366)
T ss_pred CceeeeeecccCCCCcceeeeeHHHHHHHHhHhCHHHHHHHhcCccceEEc--CC-------------------------
Confidence 999999999999999999999999999999999999999998766555431 00
Q ss_pred HHHHhCCcEEEecCCceEEEEeeeceEEecCCCCc--eEEEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHH
Q 020129 210 RAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQR--KIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLN 287 (330)
Q Consensus 210 ~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~--~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~ 287 (330)
+. ......+|+|+.|| +|+ .+.||......+ ..++..+..++ .++|+.|.+
T Consensus 253 -------------~~--~~~~~~~Pvi~~~~-~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~al~~l~~ 305 (366)
T TIGR02409 253 -------------DV--HDLRARHPVIELDD-DGEVVKIRFNNASRDWF----------FDVPPSRVQDF-YAAYRRFTE 305 (366)
T ss_pred -------------Cc--eeeEeccCEEEECC-CCCEEEEEeCCcccCcc----------CCCCHHHHHHH-HHHHHHHHH
Confidence 00 11234689999999 476 445654211111 01111111111 356777788
Q ss_pred HHhh--ceeecccCCCCEEEEecccccccCCCCC---CCceeeeecc
Q 020129 288 ILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFN---PPRRILASLC 329 (330)
Q Consensus 288 ~~~~--~~~~~~W~~GDvli~DN~~vlHgR~~f~---g~R~il~~~~ 329 (330)
++.+ +.|.|+|+|||||||||+++||||++|+ |+|.+..+..
T Consensus 306 ~~~~p~~~~~~~l~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~Y~ 352 (366)
T TIGR02409 306 LIEQPRFKFTFKLEPGDLVLFDNTRLLHARDAFSNPEGKRHLQGCYA 352 (366)
T ss_pred HHcCcccEEEEEcCCCcEEEEeceEEeecCCCcCCCCCceEEEEEEE
Confidence 8775 4689999999999999999999999996 6777766653
No 5
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=100.00 E-value=1.5e-33 Score=254.97 Aligned_cols=226 Identities=25% Similarity=0.398 Sum_probs=158.5
Q ss_pred HHHhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCC----CCccCCC-CceeecCccccCCCCC--CCCC
Q 020129 44 EKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEEL----PYVGGAA-PRTNIVGRVFTANESP--PDQK 116 (330)
Q Consensus 44 ~~~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~----~~~g~~~-~r~~~~~~v~~~~~~p--~~~~ 116 (330)
.+.++..+.|++.|.++|+|+|||++ + ++++|.+|+++||.... ...|... .+..+ ..++.....+ +...
T Consensus 20 ~~~~~~~~~~~~~l~~~G~vvlrg~~-~-~~~~~~~~~~~~G~~~~~~~~~~~g~~~~v~~~~-~~~~~~~~~~~~~~~~ 96 (258)
T PF02668_consen 20 SDEDEELEELREALAEYGFVVLRGFP-L-DPEQFEALASRLGPLMSHPRSTFYGDIWDVRSVI-PEVEDSSYTPSSSNGE 96 (258)
T ss_dssp CHHHCHHHHHHHHHHHHSEEEEESCT-S-SHHHHHHHHHHHSEBEEESSSSECCSCEEEEEEC-TTEETTTTSTTT-SSG
T ss_pred CchHHHHHHHHHHHhcccEEEEcCCC-C-CHHHHHHHHHhhCccccccccccccccccccccc-ccccccccCChhhhcc
Confidence 33446778899999999999999999 6 99999999999996521 1112100 01111 1222221111 2467
Q ss_pred cccccCCCCCCCCCceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcc
Q 020129 117 IPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWK 196 (330)
Q Consensus 117 l~~H~D~sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~ 196 (330)
++||+|++|.+.+|++++|+|+++|..||+|.|+|+..+|+.|+ |++++.|. .++.|.+...... ..
T Consensus 97 l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~~~~~~~L~---pe~~~~L~-~~~~~~~~~~~~~---------~~ 163 (258)
T PF02668_consen 97 LPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADARAVYERLS---PELLERLQ-EPVRYIRRFPSSR---------YE 163 (258)
T ss_dssp EEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEHHHHHHCSH---HHHHHHHC-TTEEEEEECGGSS---------GS
T ss_pred cccccccCcccCCcceeEEEeeccCCCCCccccccHHHHHhhCC---HHHHhhhh-ceeeEeecccccc---------cc
Confidence 99999999999999999999999999999999999999999999 99999997 4888887643320 00
Q ss_pred cccccCChhHHHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceEEEecchhhccCCCCCCCCCCcccccCC-CC
Q 020129 197 STFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGN-GK 275 (330)
Q Consensus 197 ~~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~~~n~~~~~~~~~~~~~~~~~~~~~~gd-g~ 275 (330)
. ......+|+|..||.||+++++++....... +- ..
T Consensus 164 --------------------------~---~~~~~~~Piv~~~p~~~~~~~~~~~~~~~~~--------------~~~~~ 200 (258)
T PF02668_consen 164 --------------------------E---LRPSQSHPIVRTHPETGRKILYSSPFASRFQ--------------GPPDL 200 (258)
T ss_dssp --------------------------C---CSEEEEEESEEEETTTTCEEECESTTEEEET--------------TSCEH
T ss_pred --------------------------c---cCCceEeeEEEEcCcccceeEecccceeeec--------------CcCCh
Confidence 0 1124568999999999999987665111110 00 11
Q ss_pred CCCHHHHHHHHHHH--hhceeecccCCCCEEEEecccccccCCCC--CCCceeeeec
Q 020129 276 PLPADIVHDCLNIL--EEESVAIPWQKGDVLLIDNWAVLHARRSF--NPPRRILASL 328 (330)
Q Consensus 276 ~~~~~~l~~l~~~~--~~~~~~~~W~~GDvli~DN~~vlHgR~~f--~g~R~il~~~ 328 (330)
+...++++.|.+.+ .++.+.|.|++||++||||+++||||++| .+.+|+|.++
T Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R~ 257 (258)
T PF02668_consen 201 EESQEALAALDALLKDPEYTYRHRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLRV 257 (258)
T ss_dssp HHHHHHHHHHHHHHTSGGGEEEEE--TTEEEEEETTTEEEEE--E-STTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhChhhcccccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEEe
Confidence 12367788888887 45679999999999999999999999999 3344444444
No 6
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=99.98 E-value=4.9e-31 Score=239.87 Aligned_cols=219 Identities=19% Similarity=0.273 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCC
Q 020129 50 KPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEF 129 (330)
Q Consensus 50 ~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~ 129 (330)
..++..++.++|+++|+|++ + +.+++.+++.+||.......|...+ +.......+...++..++||||++|.+.|
T Consensus 34 ~~~~l~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~---v~~~~~~~~~~~t~~~l~~HtD~~y~~~p 108 (262)
T cd00250 34 LGKLLLASAGVGFAELEGAP-L-DPAALLGLAERIGFIRGTLYGDVVP---VPGKENAQNGAYTNTLLPLHTDLAYHEYR 108 (262)
T ss_pred HHHHHHHHHHhcEEEEeCCC-C-CHHHHHHHHHHhcccccccCCCeEE---eccCCCccccccccCCcCccccCCCCCCC
Confidence 34455569999999999999 4 8999999999999765444442211 11111122344567889999999999999
Q ss_pred CceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHH
Q 020129 130 PSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEE 209 (330)
Q Consensus 130 P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~ 209 (330)
|++++|+|+++|..||+|.|+|+..+|+.|.++.|++++.|.+..+.|.......
T Consensus 109 p~~~~L~cl~~~~~GG~T~~vd~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~~------------------------- 163 (262)
T cd00250 109 PGLQILHCLRNTATGGATLLVDGFRVALKLLREDPEAFELLSRVPVRHAYPGSSG------------------------- 163 (262)
T ss_pred CceEEEEEeccCCCCCcceeeeHHHHHHHHHhhCHHHHHHHhCCCeeEEEcCCCc-------------------------
Confidence 9999999999999999999999999999998777999999998888876421110
Q ss_pred HHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceEEEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHH
Q 020129 210 RAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHDCLNIL 289 (330)
Q Consensus 210 ~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~ 289 (330)
. .......+|+|..|| .+..+.|+...... ++. ++.+...++|+.|.+++
T Consensus 164 --------------~-~~~~~~~~Pii~~~~-~~~~~r~~~~~~~~-------------~p~-~~~~~~~~al~~l~~~~ 213 (262)
T cd00250 164 --------------T-MFSSYQLAPVLELDP-EDPVLRYNNYDNFS-------------VPF-DEVKEAYEALAELVALI 213 (262)
T ss_pred --------------c-ceeeecccCEEEeCC-CccEEEEeCCCCCC-------------CCH-HHHHHHHHHHHHHHHHH
Confidence 0 011234589999998 23334565431000 011 01023468899999999
Q ss_pred hh--ceeecccCCCCEEEEecccccccCCCCCC---Cceeeeec
Q 020129 290 EE--ESVAIPWQKGDVLLIDNWAVLHARRSFNP---PRRILASL 328 (330)
Q Consensus 290 ~~--~~~~~~W~~GDvli~DN~~vlHgR~~f~g---~R~il~~~ 328 (330)
.+ +.+.|.|+|||||||||+++||||++|++ .+|+|.++
T Consensus 214 ~~~~~~~~~~l~~Gdivi~DN~r~lHgR~~f~~~~~~~R~L~r~ 257 (262)
T cd00250 214 EDPDNQLTVKLEPGDLLIFDNRRVLHGRTAFSPRYGGDRWLKGC 257 (262)
T ss_pred cChhhEEEEEcCCCCEEEEechhhhcCCCCCCCCCCCceEEEEE
Confidence 88 67999999999999999999999999975 35555443
No 7
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=5.1e-30 Score=231.95 Aligned_cols=234 Identities=19% Similarity=0.218 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHhcCeEEEeCC-CCCCCHHHHHHHHHHhCCCCCCCccCCC-C-ceeecCccccC-CCCCCCCCcccccCC
Q 020129 48 TQKPFLDSLLLKAGSVLFRGF-DDVKTAKEFNDVVEAFGYEELPYVGGAA-P-RTNIVGRVFTA-NESPPDQKIPFHHEM 123 (330)
Q Consensus 48 ~~~~~l~~~l~~~G~vl~rg~-~~~~~~~~~~~~~~~fG~~~~~~~g~~~-~-r~~~~~~v~~~-~~~p~~~~l~~H~D~ 123 (330)
...++|++++.++|+++||++ . + +++++.+++++||.....+..... + ...+....... +..| .. ..||+|.
T Consensus 30 ~~~~~i~~~~~~~~vv~fR~q~~-~-d~a~q~~~~~~fG~~~~~~~~~~~~~~~~ei~~~~~~~~~~~p-~~-~~wH~D~ 105 (286)
T COG2175 30 ATVDAIRRAVLEHKVVFFRDQAH-L-DDAEQLALARRFGELHIHPTPAVHLEGHPEILVYDNAEGNGMP-DN-AVWHTDV 105 (286)
T ss_pred hhHHHHHHHHHHcCEEEEcCCCC-C-ChHHHHhhhhhceeeEeeccCcccccCCCceeEecccccCCCC-cc-ccCcccc
Confidence 368899999999999999999 6 5 777778899999987533322100 0 01111000111 2222 23 6799999
Q ss_pred CCCCCCCceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCccc--cccc
Q 020129 124 AQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS--TFLT 201 (330)
Q Consensus 124 sy~~~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~--~f~~ 201 (330)
+|.+.||.+.+|+|++.|..||+|+|+|+..+|+.|++ .+++.+.+..+.|........ .....++.. .|..
T Consensus 106 ~f~~~~p~~~~l~~v~~P~~gg~T~f~d~~~A~~~L~~---~~r~~~~gl~~~h~~~~~~~~---~~~~~~~~p~~~~~~ 179 (286)
T COG2175 106 TFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPE---PLRELLRGLPAHHSNEERFPR---ERPSKTERPHARFRE 179 (286)
T ss_pred eeecCCCceeEEEEeecCCCCCCceeechHHHHHhccH---HHHHHHhcchhcccccccccc---cccCcCcCccchhhh
Confidence 99999999999999999999999999999999999994 567888866666652111110 001112211 0000
Q ss_pred CChhHHHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceEEE-ecchhhccCCCCCCCCCCcccccCCCCCCCHH
Q 020129 202 EDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWF-NSMVAAYTGWKDDRNDPVKAVTFGNGKPLPAD 280 (330)
Q Consensus 202 ~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~~~-n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~ 280 (330)
.. .......+|+|++||.||++++| |......+. |.....+++
T Consensus 180 ----------------~~------~~~~~~~~Pvvr~hP~~g~~~l~~n~~~~~~i~--------------g~~~~~~~~ 223 (286)
T COG2175 180 ----------------IV------RKNPPTEHPVVRTHPETGEKALFVNEGFTTRIV--------------GLPPKESEA 223 (286)
T ss_pred ----------------hh------ccCCcccCceEEeCCCcCceeeeecCCcceecc--------------CCCHHHHHH
Confidence 00 11224568999999999999854 664433331 222223457
Q ss_pred HHHHHHHHHhhc--eeecccCCCCEEEEecccccccCCCCCCC-ceeeee
Q 020129 281 IVHDCLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSFNPP-RRILAS 327 (330)
Q Consensus 281 ~l~~l~~~~~~~--~~~~~W~~GDvli~DN~~vlHgR~~f~g~-R~il~~ 327 (330)
+|+.|.+.+.+. .|+|+||+||+|||||+++||+|+.|.+. ||++-+
T Consensus 224 ll~~L~~~~~~pe~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l~R 273 (286)
T COG2175 224 LLAELQAHLTDPENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRILHR 273 (286)
T ss_pred HHHHHHHhhcChhhEEEEecCCCCEEEEeCcceeeccccCCccceEEEEE
Confidence 999999998874 69999999999999999999999999763 665543
No 8
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=208.22 Aligned_cols=239 Identities=17% Similarity=0.230 Sum_probs=179.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcc
Q 020129 39 VSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIP 118 (330)
Q Consensus 39 ~~~~~~~~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~ 118 (330)
.+++++..+...++|.+ |..+|+++++|.| . +....+++++++|.+..+..|. ...+......+|.++....|+
T Consensus 143 yee~l~~Ds~l~qwLqa-L~~~GiA~lkGAP-~-~~~~v~kl~~RiG~irrT~yGe---~F~V~ak~~asn~Ay~~~~LP 216 (407)
T KOG3888|consen 143 YEEVLDQDSVLFQWLQA-LAKYGIAFLKGAP-L-DSGVVRKLGERIGFIRRTTYGE---TFEVQAKPDASNYAYLAGPLP 216 (407)
T ss_pred HHHHhCcHHHHHHHHHH-HHhheeEEEecCC-C-CchHHHHHHhhhcceeeeeccc---eEEEeecCCcccceeecCCCC
Confidence 35566666666788886 9999999999999 4 7789999999999998766663 233333334556666678999
Q ss_pred cccCCCCCCCCCceEEecccccCCC-CCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCccc
Q 020129 119 FHHEMAQVPEFPSKLFFFCEVEPGS-GGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKS 197 (330)
Q Consensus 119 ~H~D~sy~~~~P~~~~l~c~~~p~~-GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~ 197 (330)
+|||+.|...+|++++|+|+....+ ||.++|+|++.+.+.|.+.+||.++.|....|.|..-..++.. .
T Consensus 217 lHTD~P~le~~PgvqiLH~l~qtes~gg~n~lvDgF~Va~~lr~~~pE~FeiL~~~pVd~~dig~D~~~-------~--- 286 (407)
T KOG3888|consen 217 LHTDLPYLEYPPGVQILHCLVQTESPGGMNLLVDGFYVAEQLRESHPEAFEILSSVPVDWIDIGSDGDY-------Y--- 286 (407)
T ss_pred cccCCcccccCCcceeeeeehhccCCCCcceehhhHHHHHHHHhhCHHHHHHHhhcceeeEeecCCccc-------c---
Confidence 9999999999999999999998876 9999999999999999999999999999998888754333210 0
Q ss_pred ccccCChhHHHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceEEEecchhhccCCCCCCCCCCcccccCCCCCC
Q 020129 198 TFLTEDKSIAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKIWFNSMVAAYTGWKDDRNDPVKAVTFGNGKPL 277 (330)
Q Consensus 198 ~f~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~ 277 (330)
+ ......++|+|... ..|+-+.+|....+.. .-+.++...-.+.
T Consensus 287 -~--------------------------~fh~i~r~~vI~ld-~egr~~rIN~s~~~Rd--------s~fdvp~e~v~~~ 330 (407)
T KOG3888|consen 287 -I--------------------------EFHNIWRAPVICLD-DEGRVVRINFSNPQRD--------SIFDVPVEQVQPW 330 (407)
T ss_pred -c--------------------------chhhhhcCceEEEc-ccceEEEEecCCcccc--------ccccCCHHHHHHH
Confidence 0 00112346777754 4587777765543321 1112222122222
Q ss_pred CHHHHHHHHHHHhhce--eecccCCCCEEEEecccccccCCCCCC----CceeeeeccC
Q 020129 278 PADIVHDCLNILEEES--VAIPWQKGDVLLIDNWAVLHARRSFNP----PRRILASLCK 330 (330)
Q Consensus 278 ~~~~l~~l~~~~~~~~--~~~~W~~GDvli~DN~~vlHgR~~f~g----~R~il~~~~~ 330 (330)
.+.+..+.+++.+.. ++|+.++||+|+|||+|++|||++|+. .|.+..+..|
T Consensus 331 -y~a~~~F~~~~~~~~n~~~fk~~~gdvv~FnN~RlLHgr~gy~~~~en~R~L~GaY~D 388 (407)
T KOG3888|consen 331 -YRALKLFVELANSFSNQFRFKTPPGDVVTFNNLRLLHGRTGYEDTPENQRHLVGAYFD 388 (407)
T ss_pred -HHHHHHHHHHHhCcccceEEECCCCCEEEEcceeeeccccccccCccccceeeeeEee
Confidence 688899999998876 999999999999999999999999964 6777777654
No 9
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.89 E-value=6.5e-23 Score=178.74 Aligned_cols=222 Identities=19% Similarity=0.244 Sum_probs=152.9
Q ss_pred HHHHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHhCCCCCCCccCCCCceeecCccccCCCCCCCCCcccccCCCCCCCC
Q 020129 50 KPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEF 129 (330)
Q Consensus 50 ~~~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~fG~~~~~~~g~~~~r~~~~~~v~~~~~~p~~~~l~~H~D~sy~~~~ 129 (330)
+..++ .|.+||++++.|.+ .+.+.-+++++++-+...+..|.. ....++..-.+.++....|+.|||.+|...+
T Consensus 128 ~sf~~-nlv~YGi~fvd~V~--pT~e~TEkl~~r~~pv~~TffG~m---W~Fsd~p~~~DTAYtkl~lg~HTD~TYF~~~ 201 (371)
T KOG3889|consen 128 QSFSK-NLVKYGIIFVDGVE--PTSEATEKLCQRLVPVHDTFFGQM---WVFSDEPAYEDTAYTKLELGPHTDGTYFDQT 201 (371)
T ss_pred HHHHH-HHHheeEEEEcCCC--chhHHHHHHHHHhhHHHHhhhhee---EEecCCCccccccceeeeecccCCCceeccC
Confidence 44444 48899999999998 588888999999876654444421 1111111112223445678999999999999
Q ss_pred CceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhHHHH
Q 020129 130 PSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEE 209 (330)
Q Consensus 130 P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~~~ 209 (330)
|++++|+|++.+.+||+|.|+|+..+.+.|.++.|+-++.|.+..+... +..+.
T Consensus 202 ~GiQvfHCl~h~gtGG~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~he--YiE~~------------------------ 255 (371)
T KOG3889|consen 202 PGIQVFHCLTHAGTGGDTVLVDGFYCAEKLRNESPEDFEILCNVKISHE--YIEGS------------------------ 255 (371)
T ss_pred CCceEEEeecccCCCCceEEEehHHHHHHHHhhChHhhhHhhcCccchh--hhcCC------------------------
Confidence 9999999999999999999999999999999999999999997665432 22110
Q ss_pred HHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceE--EEecchhhccCCCCCCCCCCccc-ccCCCCCCCHHHHHHHH
Q 020129 210 RAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI--WFNSMVAAYTGWKDDRNDPVKAV-TFGNGKPLPADIVHDCL 286 (330)
Q Consensus 210 ~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~--~~n~~~~~~~~~~~~~~~~~~~~-~~gdg~~~~~~~l~~l~ 286 (330)
.+.........|+|...|.+|+.. .||.-.-. +.++ +...... -.+++..|.
T Consensus 256 -------------ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRA-----------vfnt~p~ae~~~-fY~a~r~l~ 310 (371)
T KOG3889|consen 256 -------------GESHIHSVSLEPPVIERPSFGEITQIRFNPYDRA-----------VFNTLPAAETIK-FYEAYRKLS 310 (371)
T ss_pred -------------CcccceeeccCCceEecCCCCceEEEEecccchh-----------hhccCCHHHHHH-HHHHHHHHH
Confidence 000122222348888899999875 45542211 1111 1111101 134455555
Q ss_pred HHHhh--ceeecccCCCCEEEEecccccccCCCCCCCceeeeec
Q 020129 287 NILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFNPPRRILASL 328 (330)
Q Consensus 287 ~~~~~--~~~~~~W~~GDvli~DN~~vlHgR~~f~g~R~il~~~ 328 (330)
.++.+ ..+.+++.||-++++||+||+|||+.|+|.|.+..+.
T Consensus 311 ~i~r~p~n~~~ikL~PGsvifiDNwRvLHgRe~ftGyRqmcGcY 354 (371)
T KOG3889|consen 311 KICRNPDNSIEIKLRPGSVIFIDNWRVLHGRESFTGYRQMCGCY 354 (371)
T ss_pred HHhcCccceEEEEecCceEEEEeceeEecCcccccchhhhccee
Confidence 55543 4699999999999999999999999999999876553
No 10
>PRK02963 carbon starvation induced protein; Validated
Probab=99.86 E-value=4.2e-21 Score=174.21 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=130.9
Q ss_pred HhcCeEEEeCCCCCC---CHHHHHHHHHHhCC-CCCCCccCCC----CceeecCccccCCCCC-CCCCcccccCCCCCCC
Q 020129 58 LKAGSVLFRGFDDVK---TAKEFNDVVEAFGY-EELPYVGGAA----PRTNIVGRVFTANESP-PDQKIPFHHEMAQVPE 128 (330)
Q Consensus 58 ~~~G~vl~rg~~~~~---~~~~~~~~~~~fG~-~~~~~~g~~~----~r~~~~~~v~~~~~~p-~~~~l~~H~D~sy~~~ 128 (330)
+++|+.++--.+ ++ +++++.+|+.++|. +..+..|+.. .+..+.......+... +...+++|||++|...
T Consensus 84 r~~g~~~~~~~~-~~~~~~~~~~~~l~~~i~~~I~~t~fg~m~g~~ya~F~Vk~~~~~~~ya~~a~t~L~lHTD~pY~e~ 162 (316)
T PRK02963 84 RAEGAFLINAVG-IDDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEE 162 (316)
T ss_pred cccCceEeeccc-CCccCCHHHHHHHHHHhhhccCCCCccccccceeeEEEEEecCCccchhhhhccCCCCcCCCCCccC
Confidence 367888776655 44 78999999999998 5545554322 2333332211111111 1224999999999999
Q ss_pred CCceEEeccccc-CCCCCccccc--cHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChh
Q 020129 129 FPSKLFFFCEVE-PGSGGETPIV--LSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKS 205 (330)
Q Consensus 129 ~P~~~~l~c~~~-p~~GGeT~~~--d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~ 205 (330)
||++++|+|... ...||+|.|+ |+..+.+.|.+ +| |.+..+.|......
T Consensus 163 pPGlQlLl~~~~~~~~GGeS~lVhvDGF~vAe~Lr~-~P-----Lt~~pV~~~~~~~~---------------------- 214 (316)
T PRK02963 163 ITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHFFR-HP-----LARRPMRWAAPPSK---------------------- 214 (316)
T ss_pred CCCceeeeeeccCCCCCcCeeeEcCCcHHHHHHHHh-Cc-----CcCCceeeeecCCC----------------------
Confidence 999976666654 4789999997 99999999996 77 78777777532110
Q ss_pred HHHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceE-EEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHH
Q 020129 206 IAEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI-WFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHD 284 (330)
Q Consensus 206 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~-~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~ 284 (330)
+ ......+|+|..++ .|+.. .||.. . ..+. +.....++..
T Consensus 215 -----------------~---~~~~~~~PVI~lD~-~G~l~ir~nd~--~-------------~~P~---~~~~~~Y~~~ 255 (316)
T PRK02963 215 -----------------N---VSKDVFHPVFDVDQ-QGRPVMRYIDQ--F-------------VQPK---DFEEGVWLSE 255 (316)
T ss_pred -----------------c---cceeeecceEEECC-CCCEEEEEcCC--C-------------CCCh---HHHHHHHHHH
Confidence 0 11234579998765 69876 23310 0 0000 0112334888
Q ss_pred HHHHHhhc--eeecccCCCCEEEEecccccccCCCCCC
Q 020129 285 CLNILEEE--SVAIPWQKGDVLLIDNWAVLHARRSFNP 320 (330)
Q Consensus 285 l~~~~~~~--~~~~~W~~GDvli~DN~~vlHgR~~f~g 320 (330)
+.+.+.+. .+.++++|||+|++||+|+||||++|++
T Consensus 256 f~~~L~~p~~~~~fkL~pGd~vvfDN~RVLHGR~aF~~ 293 (316)
T PRK02963 256 LSDALETSKGILSVPVPVGKFLLINNLFWLHGRDRFTP 293 (316)
T ss_pred HHHHHhCchhEEEEecCCceEEEEeCeEEeeCCCCcCC
Confidence 88888775 4889999999999999999999999963
No 11
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=98.71 E-value=4.6e-08 Score=85.79 Aligned_cols=201 Identities=16% Similarity=0.241 Sum_probs=97.0
Q ss_pred HhcCeEEEeCCCCCC---CHHHHHHHHHHh----CCCCC-CCccCCCCceeecCccccCCCC--CCCCCcccccCCCCCC
Q 020129 58 LKAGSVLFRGFDDVK---TAKEFNDVVEAF----GYEEL-PYVGGAAPRTNIVGRVFTANES--PPDQKIPFHHEMAQVP 127 (330)
Q Consensus 58 ~~~G~vl~rg~~~~~---~~~~~~~~~~~f----G~~~~-~~~g~~~~r~~~~~~v~~~~~~--p~~~~l~~H~D~sy~~ 127 (330)
+++|+.++--.+ +. +.+++.+|+.++ |..-+ ...|....|..+.. +..|+.+ .+...+.+|||++|..
T Consensus 71 R~~G~f~i~~~g-~~~~~q~d~~Vk~sTAi~HLiG~pNfDaMsGkYYARF~Vkn-~DnSDSYLRqa~r~meLHnDGTyV~ 148 (297)
T PF08943_consen 71 RNTGAFLIGPEG-LDQVEQADDMVKFSTAISHLIGRPNFDAMSGKYYARFVVKN-TDNSDSYLRQAYRRMELHNDGTYVD 148 (297)
T ss_dssp TT--EEEEEETT---SGGGHHHHHHHHHHHHHHHEEE---TTTSSSSEEEEEE---------TT-TT--EEEE-S-TTSS
T ss_pred cccCceEecccc-ccchhchhhhHhHHHHHHHHhCCCchhhcCceeEEEEEEec-CCCchhhhhcccceeeeecCCceec
Confidence 367988887666 43 356777777765 44332 34554455766643 2222222 3467788999999999
Q ss_pred CCCceEEeccc-ccCCCCCccccccHHHHHHHhhhhCchHHHHHhhcCeEEEEEcCCCCCCCCCCCCCcccccccCChhH
Q 020129 128 EFPSKLFFFCE-VEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSI 206 (330)
Q Consensus 128 ~~P~~~~l~c~-~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~ 206 (330)
..-+++++.=. +.-..||+|.+...-. |++|. .=+..-|++..+.|.. |.++
T Consensus 149 E~TD~vLMmKidEqN~~GG~S~lLHLDD-We~ld---~f~~hplak~~~~w~a--P~SK--------------------- 201 (297)
T PF08943_consen 149 ERTDWVLMMKIDEQNMEGGESLLLHLDD-WEDLD---KFYNHPLAKQPFVWGA--PPSK--------------------- 201 (297)
T ss_dssp S---EEEEEEEEEES--B--EEEEEGGG--TTHH---HHHTSGGGGS-EEE----SS-T---------------------
T ss_pred cccceeeeeeehhhhccCcceeeeeccc-HHHHH---HHhcCcccccceeecC--CCCc---------------------
Confidence 99998876654 3456899999876433 34443 1222446776766642 2221
Q ss_pred HHHHHHHhCCcEEEecCCceEEEEeeeceEEecCCCCceE--EEecchhhccCCCCCCCCCCcccccCCCCCCCHHHHHH
Q 020129 207 AEERAARLGMKLEWMEDGGVKTIMGPIPAIKYDESRQRKI--WFNSMVAAYTGWKDDRNDPVKAVTFGNGKPLPADIVHD 284 (330)
Q Consensus 207 ~~~~~~~~~~~~~w~~~~~~~~~~~~~P~v~~hp~TG~~~--~~n~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~ 284 (330)
.+.....||++..-...|+|+ |+.+... |.+ + .....|..
T Consensus 202 -------------------Nv~~~v~hpvFF~~d~~g~P~m~fIDQF~q------------P~n--~-----eeg~~L~~ 243 (297)
T PF08943_consen 202 -------------------NVSYDVEHPVFFEEDSNGKPHMSFIDQFVQ------------PKN--M-----EEGLYLNE 243 (297)
T ss_dssp -------------------T----EEE-S-EEE-TTS-EEE---TTTEE--------------S--H-----HHHHHHHH
T ss_pred -------------------cccceeeccccccccCCCCeeEEEeeccCC------------CCc--H-----HHHHHHHH
Confidence 011123478855555678887 3333210 111 1 01357888
Q ss_pred HHHHHhh--ceeecccCCCCEEEEecccccccCCCCCC----Cceee
Q 020129 285 CLNILEE--ESVAIPWQKGDVLLIDNWAVLHARRSFNP----PRRIL 325 (330)
Q Consensus 285 l~~~~~~--~~~~~~W~~GDvli~DN~~vlHgR~~f~g----~R~il 325 (330)
|.+.++. ..+.++.-+|++|+++|+..||||.+|+. .|.+|
T Consensus 244 ls~slE~s~~~~~v~vpvG~~lv~NN~fwLHGR~~F~~~~~L~RELm 290 (297)
T PF08943_consen 244 LSESLENSKNKFSVPVPVGSFLVINNHFWLHGRDKFEPHPGLRRELM 290 (297)
T ss_dssp HHHHHHT-TT-EEE---TT-EEEEETTTEEEEE--B---TT-EEEEE
T ss_pred HHHHHhcCCCeEEEEcCCCcEEEEeeEEEEeccCCCCCChhHHHHHH
Confidence 8888876 45999999999999999999999999975 35555
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=76.45 E-value=1 Score=34.04 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.0
Q ss_pred cCCCCEEEEecccccccCCCC-CCCceeeeec
Q 020129 298 WQKGDVLLIDNWAVLHARRSF-NPPRRILASL 328 (330)
Q Consensus 298 W~~GDvli~DN~~vlHgR~~f-~g~R~il~~~ 328 (330)
-++|++|++++..++|+.++. .+.||+.+.+
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEE
Confidence 889999999999999999999 6666655544
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=72.51 E-value=3.6 Score=34.65 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=29.8
Q ss_pred eeecccCCCCEEEEecc--cccccCCCCC-CCceeeeec
Q 020129 293 SVAIPWQKGDVLLIDNW--AVLHARRSFN-PPRRILASL 328 (330)
Q Consensus 293 ~~~~~W~~GDvli~DN~--~vlHgR~~f~-g~R~il~~~ 328 (330)
...+.=++|++|+|.|. +.+|+..+.. |.|.+++.+
T Consensus 138 ~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W 176 (178)
T smart00702 138 CATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGW 176 (178)
T ss_pred ceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEE
Confidence 35677789999999998 7999999986 788777655
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=67.07 E-value=6.1 Score=33.43 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=25.5
Q ss_pred eeecccCCCCEEEEecccccccCCCCC
Q 020129 293 SVAIPWQKGDVLLIDNWAVLHARRSFN 319 (330)
Q Consensus 293 ~~~~~W~~GDvli~DN~~vlHgR~~f~ 319 (330)
.+.+..++||||+.+=.+.+||-++.+
T Consensus 127 g~~~~~~~GtVl~~~~~~~~Hgvtpv~ 153 (171)
T PF12851_consen 127 GVAFAYQPGTVLIFCAKRELHGVTPVE 153 (171)
T ss_pred CEEEecCCCcEEEEcccceeeecCccc
Confidence 488999999999999999999999998
No 15
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.85 E-value=8.3 Score=32.90 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.7
Q ss_pred eecccCCCCEEEEecccccccCCCCC
Q 020129 294 VAIPWQKGDVLLIDNWAVLHARRSFN 319 (330)
Q Consensus 294 ~~~~W~~GDvli~DN~~vlHgR~~f~ 319 (330)
+.--++||++++.|.++++|+.+++.
T Consensus 175 f~kvl~pGe~~~l~Dh~~~H~~tpi~ 200 (226)
T COG4340 175 FFKVLAPGEAVFLDDHRVLHGVTPIV 200 (226)
T ss_pred eEEeccCCcEEEeccchhccccccee
Confidence 44457899999999999999999984
No 16
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=53.70 E-value=7.9 Score=32.24 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=10.8
Q ss_pred cccCCCCEEEEe
Q 020129 296 IPWQKGDVLLID 307 (330)
Q Consensus 296 ~~W~~GDvli~D 307 (330)
=.||+||||.|+
T Consensus 105 ~~~q~GDIVtw~ 116 (164)
T PF06940_consen 105 EDWQPGDIVTWR 116 (164)
T ss_pred hhcCCCCEEEEe
Confidence 479999999996
No 17
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=50.64 E-value=16 Score=30.73 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=29.8
Q ss_pred CCCcccccCCCCCCC--CCceEEecccccCCCCCccccccHH
Q 020129 114 DQKIPFHHEMAQVPE--FPSKLFFFCEVEPGSGGETPIVLSH 153 (330)
Q Consensus 114 ~~~l~~H~D~sy~~~--~P~~~~l~c~~~p~~GGeT~~~d~~ 153 (330)
...+.+|.|...... .-.+++++.+..+..||+|.|-+..
T Consensus 93 g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 93 GGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred CCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 456779999886542 3357777777778899999998753
No 18
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=47.09 E-value=11 Score=35.50 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.5
Q ss_pred cCCCCEEEEecccccccCCC
Q 020129 298 WQKGDVLLIDNWAVLHARRS 317 (330)
Q Consensus 298 W~~GDvli~DN~~vlHgR~~ 317 (330)
++|||+|++||.+|+-+|--
T Consensus 49 l~~gDlLV~NdTkVipARL~ 68 (344)
T TIGR00113 49 FNEGDLLVLNNTKVIPARLF 68 (344)
T ss_pred cCCCCEEEEeCcEEeeeeEE
Confidence 57999999999999888753
No 19
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=42.57 E-value=15 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=18.0
Q ss_pred ccCCCCEEEEecccccccCCC
Q 020129 297 PWQKGDVLLIDNWAVLHARRS 317 (330)
Q Consensus 297 ~W~~GDvli~DN~~vlHgR~~ 317 (330)
-+++||+|++||.+|+-+|--
T Consensus 49 ~l~~gDlLV~NdTkVipARL~ 69 (342)
T PRK00147 49 YLNPGDLLVFNDTRVIPARLF 69 (342)
T ss_pred hcCCCCEEEEEcCeeeeeeEE
Confidence 357999999999999988853
No 20
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=41.26 E-value=16 Score=34.58 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred ccCCCCEEEEecccccccCCCC
Q 020129 297 PWQKGDVLLIDNWAVLHARRSF 318 (330)
Q Consensus 297 ~W~~GDvli~DN~~vlHgR~~f 318 (330)
-+++||+|+++|.+|+-+|--.
T Consensus 46 ~L~~GDlLV~NdTkVipARL~g 67 (366)
T PRK01424 46 YLKEGDLLVFNNSKVIKAKLNL 67 (366)
T ss_pred hcCCCCEEEEeccEEeeeEEEc
Confidence 3679999999999999998643
No 21
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=40.95 E-value=12 Score=35.34 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=16.3
Q ss_pred ccCCCCEEEEecccccccCCCC
Q 020129 297 PWQKGDVLLIDNWAVLHARRSF 318 (330)
Q Consensus 297 ~W~~GDvli~DN~~vlHgR~~f 318 (330)
-+++||+|++||.+|+.+|--.
T Consensus 48 ~L~~GDlLV~NdTkVipARL~g 69 (341)
T PF02547_consen 48 YLRPGDLLVFNDTKVIPARLFG 69 (341)
T ss_dssp G--TTEEEEEEEEEE-SEEEEE
T ss_pred hhCCCCEEEEeCCEEEeeEEEE
Confidence 4679999999999999988543
No 22
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=40.63 E-value=26 Score=31.07 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=28.8
Q ss_pred CCCCcccccCCCCCCCC-------CceEEecccccCC--CCCccccccH
Q 020129 113 PDQKIPFHHEMAQVPEF-------PSKLFFFCEVEPG--SGGETPIVLS 152 (330)
Q Consensus 113 ~~~~l~~H~D~sy~~~~-------P~~~~l~c~~~p~--~GGeT~~~d~ 152 (330)
......+|.|.++...+ -.+.++..+..|. .||+|.|-+.
T Consensus 89 ~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 89 GGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred CCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 34677899999987532 2466677777665 7999998764
No 23
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=39.12 E-value=31 Score=28.92 Aligned_cols=32 Identities=34% Similarity=0.669 Sum_probs=21.9
Q ss_pred hceeecccCCCCEEEEecccccccCCC-CCC-Cce
Q 020129 291 EESVAIPWQKGDVLLIDNWAVLHARRS-FNP-PRR 323 (330)
Q Consensus 291 ~~~~~~~W~~GDvli~DN~~vlHgR~~-f~g-~R~ 323 (330)
...+....++||+||+|.+ ++||..+ -++ .|+
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~-~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSR-LIHGSGPNTSDDPRR 210 (211)
T ss_dssp SGCEEE-BSTTEEEEEETT-SEEEEE-B-SSSTEE
T ss_pred CceEEeecCCCeEEEEcCC-ccccCCCCCCcCcCC
Confidence 3458889999999999985 6798765 333 454
No 24
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=38.18 E-value=51 Score=30.03 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHh
Q 020129 53 LDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF 84 (330)
Q Consensus 53 l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~f 84 (330)
..+.+.+.|+++++|+= ++++..++...+
T Consensus 21 qi~~f~~dGyvvl~~vl---s~eev~~lr~~i 49 (277)
T TIGR02408 21 QLQSYERDGFLLLENLF---SDDEVAALLAEV 49 (277)
T ss_pred HHHHHHHCCEEECcccC---CHHHHHHHHHHH
Confidence 33469999999999963 778877777665
No 25
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=37.91 E-value=20 Score=33.58 Aligned_cols=18 Identities=33% Similarity=0.590 Sum_probs=15.8
Q ss_pred cCCCCEEEEecccccccC
Q 020129 298 WQKGDVLLIDNWAVLHAR 315 (330)
Q Consensus 298 W~~GDvli~DN~~vlHgR 315 (330)
++|||+++++|.+|+=+|
T Consensus 50 l~~GD~LVfNdTrVIpAR 67 (348)
T COG0809 50 LNPGDLLVFNDTRVIPAR 67 (348)
T ss_pred cCCCCEEEEecCeeechh
Confidence 579999999999997655
No 26
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=34.61 E-value=33 Score=25.86 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceeecccCCCCEEEEecccccccCCCCCC-Cceeeeec
Q 020129 292 ESVAIPWQKGDVLLIDNWAVLHARRSFNP-PRRILASL 328 (330)
Q Consensus 292 ~~~~~~W~~GDvli~DN~~vlHgR~~f~g-~R~il~~~ 328 (330)
..+.+.-++|||||+-.+ +.|+-.++.+ ..||-+|+
T Consensus 64 ~~~~~~p~~G~lvlFPs~-l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSW-LWHGVPPNNSDEERISISF 100 (101)
T ss_dssp SEEEE---TTEEEEEETT-SEEEE----SSS-EEEEEE
T ss_pred ceEEeCCCCCEEEEeCCC-CEEeccCcCCCCCEEEEEc
Confidence 457889999999999965 6799999976 46666653
No 27
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=34.52 E-value=27 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=19.9
Q ss_pred eecccCCCCEEEEecccccccCC-CCCCCceeee
Q 020129 294 VAIPWQKGDVLLIDNWAVLHARR-SFNPPRRILA 326 (330)
Q Consensus 294 ~~~~W~~GDvli~DN~~vlHgR~-~f~g~R~il~ 326 (330)
-.+.|++|.++++|+. ..|... .-+.+|.+|+
T Consensus 124 ~~~~w~~G~~~~fD~s-~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 124 ETRHWREGECWVFDDS-FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEB--CTEEEEE-TT-S-EEEEESSSS-EEEEE
T ss_pred eEEEeccCcEEEEeCC-EEEEEEeCCCCCEEEEE
Confidence 4689999999999997 667654 3455777665
No 28
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=34.51 E-value=25 Score=33.98 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=31.6
Q ss_pred CCCceEEecccccCCCCCccccccHHHHHHHhhhhCchHHHHH
Q 020129 128 EFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQL 170 (330)
Q Consensus 128 ~~P~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pel~~~L 170 (330)
..|..++|||.+||.. .-+-|-..+++-|.+++|.++-+|
T Consensus 452 e~pd~vffc~iepps~---~k~~d~ehale~lqredpslkir~ 491 (753)
T KOG0464|consen 452 EIPDAVFFCCIEPPSL---RKLNDFEHALECLQREDPSLKIRF 491 (753)
T ss_pred cCCCceEEEeccCccc---ccchhHHHHHHHHhccCCceeEEe
Confidence 4789999999999964 456677888999998888776443
No 29
>PHA02813 hypothetical protein; Provisional
Probab=34.06 E-value=31 Score=32.54 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCCcccccCCCCCCC--CCceEEecccccCCCCCccccccH
Q 020129 113 PDQKIPFHHEMAQVPE--FPSKLFFFCEVEPGSGGETPIVLS 152 (330)
Q Consensus 113 ~~~~l~~H~D~sy~~~--~P~~~~l~c~~~p~~GGeT~~~d~ 152 (330)
+.+.+.+|.|++|... ...+.+|.-+..+..||+|.|...
T Consensus 103 kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 103 KGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred CCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcC
Confidence 3566789999988552 345566777778899999999876
No 30
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=32.79 E-value=30 Score=26.01 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=33.9
Q ss_pred EecccccCC-CCCccccccHHHHHHHhhhhCchHHHHHhhcCeE
Q 020129 134 FFFCEVEPG-SGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLI 176 (330)
Q Consensus 134 ~l~c~~~p~-~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~ 176 (330)
+|-|-.... ..|--+|-|.-++++.|.++-.|.++.|+++|+.
T Consensus 47 ~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 47 SFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444444 3478889999999999999888999999999874
No 31
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=32.52 E-value=1.4e+02 Score=22.61 Aligned_cols=37 Identities=8% Similarity=-0.001 Sum_probs=26.7
Q ss_pred HhhhHHHHHHHHHhcCeEEEeCCCCCCCHHH---HHHHHHHh
Q 020129 46 VRTQKPFLDSLLLKAGSVLFRGFDDVKTAKE---FNDVVEAF 84 (330)
Q Consensus 46 ~~~~~~~l~~~l~~~G~vl~rg~~~~~~~~~---~~~~~~~f 84 (330)
-.+..+.|.+++.++|+..+.|.+ + +.+. ..+.++.|
T Consensus 13 ~~~~~~~l~~A~~~~GFf~l~nhG-i-~~~l~~~~~~~~~~f 52 (116)
T PF14226_consen 13 REEVAEQLRDACEEWGFFYLVNHG-I-PQELIDRVFAAAREF 52 (116)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESSS-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEeccc-c-cchhhHHHHHHHHHH
Confidence 345678899999999999999999 6 5543 33444444
No 32
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=31.55 E-value=44 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=29.0
Q ss_pred ceeecccCCCCEEEEecc--------cccccCCCC-CCCceeeee
Q 020129 292 ESVAIPWQKGDVLLIDNW--------AVLHARRSF-NPPRRILAS 327 (330)
Q Consensus 292 ~~~~~~W~~GDvli~DN~--------~vlHgR~~f-~g~R~il~~ 327 (330)
..+.++=++|+.|+|-|. +.+|+..|. .|.+.++.-
T Consensus 204 ~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atk 248 (310)
T PLN00052 204 KGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPK 248 (310)
T ss_pred CCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEE
Confidence 458889999999999996 699999997 566665543
No 33
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=29.27 E-value=22 Score=25.54 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=28.0
Q ss_pred ceEEecccccCCCCCccccccHHHHHHHhhhhCch
Q 020129 131 SKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPD 165 (330)
Q Consensus 131 ~~~~l~c~~~p~~GGeT~~~d~~~~~~~L~~~~pe 165 (330)
.-++++|-++|..|=+-.+.++.++++.|.+..|.
T Consensus 7 EqlF~~~FR~a~~~Ee~e~lsa~~If~~L~k~~~~ 41 (73)
T PF12990_consen 7 EQLFHCCFRPAEEGEEGEWLSAAEIFERLQKKSPA 41 (73)
T ss_pred HHHHHHHccCCCCCccceeecHHHHHHHHHHhCcc
Confidence 34567788988887777889999999999976665
No 34
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=27.93 E-value=30 Score=29.86 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=22.2
Q ss_pred eecccCCCCEEEEecccccccCCCCC-------CCceeee
Q 020129 294 VAIPWQKGDVLLIDNWAVLHARRSFN-------PPRRILA 326 (330)
Q Consensus 294 ~~~~W~~GDvli~DN~~vlHgR~~f~-------g~R~il~ 326 (330)
...-.++||.+++|-.++.|+.+|.. |.|-+|+
T Consensus 153 ~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlv 192 (195)
T PF10014_consen 153 FFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLV 192 (195)
T ss_dssp EE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEE
T ss_pred EEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEE
Confidence 45578899999999999999998863 3466654
No 35
>PF07892 DUF1667: Protein of unknown function (DUF1667); InterPro: IPR012460 Hypothetical archaeal and bacterial proteins make up this family. A few proteins are annotated as being potential metal-binding proteins, and in fact the members of this family have four highly conserved cysteine residues, but no further literature evidence was found in this regard. ; PDB: 2JOV_A.
Probab=25.78 E-value=70 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHhhceeecccCCCCEEEEe
Q 020129 273 NGKPLPADIVHDCLNILEEESVAIPWQKGDVLLID 307 (330)
Q Consensus 273 dg~~~~~~~l~~l~~~~~~~~~~~~W~~GDvli~D 307 (330)
-..+++.+.+.++.+.+.+..+.-+-+.||+++=|
T Consensus 36 T~~pIPk~~i~e~m~~i~~i~v~aPV~~GdVi~~n 70 (82)
T PF07892_consen 36 TSKPIPKEKIFEVMEEIKKIEVKAPVKIGDVIVKN 70 (82)
T ss_dssp EEEEE-HHHHHHHHHHHTT-EE-----SSEEEEES
T ss_pred cCCCCCHHHHHHHHHHHhCCEEcCCccCCCEEEec
Confidence 34578899999999999999999999999998765
No 36
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=25.62 E-value=59 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.0
Q ss_pred eecccCCCCEEEEecccccccCCCCC-CCceeeeec
Q 020129 294 VAIPWQKGDVLLIDNWAVLHARRSFN-PPRRILASL 328 (330)
Q Consensus 294 ~~~~W~~GDvli~DN~~vlHgR~~f~-g~R~il~~~ 328 (330)
..++.++||+|++.+. .+|..+|-+ |.|..++.|
T Consensus 141 ~~Vkp~aG~~vlfps~-~lH~v~pVt~G~R~~~~~W 175 (226)
T PRK05467 141 HRVKLPAGDLVLYPST-SLHRVTPVTRGVRVASFFW 175 (226)
T ss_pred EEEecCCCeEEEECCC-CceeeeeccCccEEEEEec
Confidence 4567889999999985 789999964 677776654
No 37
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=25.41 E-value=35 Score=14.69 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=5.1
Q ss_pred eecccCCC
Q 020129 294 VAIPWQKG 301 (330)
Q Consensus 294 ~~~~W~~G 301 (330)
+++.|.||
T Consensus 3 wS~~w~PG 10 (10)
T PF00446_consen 3 WSHGWKPG 10 (10)
T ss_pred cccccCCC
Confidence 45667766
No 38
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=24.70 E-value=1.2e+02 Score=23.32 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=32.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhceeecccCCCCEEEEe
Q 020129 270 TFGNGKPLPADIVHDCLNILEEESVAIPWQKGDVLLID 307 (330)
Q Consensus 270 ~~gdg~~~~~~~l~~l~~~~~~~~~~~~W~~GDvli~D 307 (330)
+..-..||+.++.-++.+.+.+..+.-+-+.||+++=|
T Consensus 63 pVKT~kPIpKel~~elmk~l~~l~v~aPVK~GDvV~kn 100 (117)
T COG3862 63 PVKTEKPIPKELIPELMKELSRLKVGAPVKIGDVVIKN 100 (117)
T ss_pred ecccCCCCCHHHhHHHHHHHHhheecCCeeeccEEeeh
Confidence 44556789999999999999988888999999999854
No 39
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=24.45 E-value=45 Score=25.18 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=10.8
Q ss_pred cccCCCCEEEEec
Q 020129 296 IPWQKGDVLLIDN 308 (330)
Q Consensus 296 ~~W~~GDvli~DN 308 (330)
=..+||||+++.+
T Consensus 50 ~~~~pGDlif~~~ 62 (105)
T PF00877_consen 50 SELQPGDLIFFKG 62 (105)
T ss_dssp GG-TTTEEEEEEG
T ss_pred hcCCcccEEEEeC
Confidence 3889999999998
No 40
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.42 E-value=53 Score=24.31 Aligned_cols=61 Identities=11% Similarity=0.002 Sum_probs=39.5
Q ss_pred CCcccccCCCCCCCCCceEEecccccCC-CCCccccccHHHHHHHhhhhCchHHHHHhhcCeE
Q 020129 115 QKIPFHHEMAQVPEFPSKLFFFCEVEPG-SGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLI 176 (330)
Q Consensus 115 ~~l~~H~D~sy~~~~P~~~~l~c~~~p~-~GGeT~~~d~~~~~~~L~~~~pel~~~L~~~~v~ 176 (330)
...+||+--.|.|-. -++++-|--.-. .-|--+|-|..+++-+|..+..|.++.|+.+|.+
T Consensus 33 Leeplscl~~y~P~~-~~l~~G~Ya~~tv~Y~VATfnDc~eA~veL~~~IkEAr~~L~rkg~r 94 (95)
T KOG4841|consen 33 LEEPLSCLEVYWPLY-LLLSAGCYALGTVGYRVATFNDCEEAAVELQSQIKEARADLARKGLR 94 (95)
T ss_pred CcccHHHHHhhhHHH-HHHHHHhHhhhhheeeeeccCCcHHHHHHHHHHHHHHHHHHHHccCC
Confidence 345688776664430 111222222222 2366779999999999998888888999988764
No 41
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=21.48 E-value=79 Score=30.48 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCCCcccccCCCCCCC--CCceEEecccccCCCCCcccccc
Q 020129 113 PDQKIPFHHEMAQVPE--FPSKLFFFCEVEPGSGGETPIVL 151 (330)
Q Consensus 113 ~~~~l~~H~D~sy~~~--~P~~~~l~c~~~p~~GGeT~~~d 151 (330)
+.+.+.+|.|++|... .-.+.+|.-+..+..||+|.|..
T Consensus 112 kGq~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 112 KGDYFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred CCCcccccccCceecCCCEEEEEEEEEEeccCCCCceEEEe
Confidence 3566789999987553 33455666677889999999997
No 42
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=20.93 E-value=69 Score=25.69 Aligned_cols=11 Identities=45% Similarity=0.607 Sum_probs=10.0
Q ss_pred ccCCCCEEEEe
Q 020129 297 PWQKGDVLLID 307 (330)
Q Consensus 297 ~W~~GDvli~D 307 (330)
..||||||++.
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 68999999996
No 43
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=20.90 E-value=69 Score=27.60 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=9.7
Q ss_pred ccCCCCEEEEe
Q 020129 297 PWQKGDVLLID 307 (330)
Q Consensus 297 ~W~~GDvli~D 307 (330)
..+|||+|+|+
T Consensus 128 ~lqpGDLVfF~ 138 (190)
T PRK10838 128 KLRTGDLVLFR 138 (190)
T ss_pred CCCCCcEEEEC
Confidence 67999999986
No 44
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=20.54 E-value=2.5e+02 Score=21.75 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHHhcCeEEEeCCCCCCCHHHHHHHHHHh
Q 020129 52 FLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAF 84 (330)
Q Consensus 52 ~l~~~l~~~G~vl~rg~~~~~~~~~~~~~~~~f 84 (330)
-++++-...+.++|||+. -.+-.+..+.+..+
T Consensus 16 l~~~a~~~~~~~V~RG~~-~g~~~~t~~~~~~l 47 (113)
T PF09673_consen 16 LLKQAERAGVVVVFRGFP-DGSFKPTAKAIQEL 47 (113)
T ss_pred HHHHHHhCCcEEEEECCC-CCCHHHHHHHHHHH
Confidence 344444447899999998 33444444444443
No 45
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=20.32 E-value=1.1e+02 Score=21.34 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=21.0
Q ss_pred CCCCcccccCCCCCCC-CC-ceEEecccc---cCC-CCCcccccc
Q 020129 113 PDQKIPFHHEMAQVPE-FP-SKLFFFCEV---EPG-SGGETPIVL 151 (330)
Q Consensus 113 ~~~~l~~H~D~sy~~~-~P-~~~~l~c~~---~p~-~GGeT~~~d 151 (330)
....+.||.|...... .+ .+.+|.-+. .+. .||++.|-+
T Consensus 20 ~g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~ 64 (70)
T PF13661_consen 20 RGDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDD 64 (70)
T ss_pred CCCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeC
Confidence 3467889999887655 22 233333333 233 355555543
No 46
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=20.29 E-value=1.7e+02 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=27.0
Q ss_pred chHHHHHHHhhhHHHHHHHHHhcCeEEEeCCC
Q 020129 38 TVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFD 69 (330)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~~l~~~G~vl~rg~~ 69 (330)
+..+....+++..+.|.+.|.+.|-|.|+||.
T Consensus 17 s~~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG 48 (90)
T PRK10664 17 SKAAAGRALDAIIASVTESLKEGDDVALVGFG 48 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEECCcE
Confidence 45566677788889999999999999999998
Done!