Query 020130
Match_columns 330
No_of_seqs 279 out of 1626
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-98 4E-103 732.2 27.3 326 2-327 74-410 (524)
2 COG2723 BglB Beta-glucosidase/ 100.0 1.2E-89 2.7E-94 665.9 27.1 311 2-328 42-360 (460)
3 PLN02849 beta-glucosidase 100.0 3.9E-89 8.4E-94 682.4 28.8 318 8-328 68-390 (503)
4 PLN02998 beta-glucosidase 100.0 9.1E-89 2E-93 678.9 28.8 317 9-328 72-397 (497)
5 PLN02814 beta-glucosidase 100.0 2.1E-88 4.6E-93 677.3 29.7 318 7-328 65-392 (504)
6 PRK09593 arb 6-phospho-beta-gl 100.0 1.3E-84 2.8E-89 647.8 28.0 303 10-329 64-374 (478)
7 PRK09589 celA 6-phospho-beta-g 100.0 2.2E-84 4.8E-89 645.8 28.8 300 10-328 58-372 (476)
8 PRK15014 6-phospho-beta-glucos 100.0 2.8E-83 6E-88 637.6 29.8 302 10-328 60-373 (477)
9 PRK13511 6-phospho-beta-galact 100.0 2.1E-83 4.6E-88 638.9 28.6 301 10-328 45-373 (469)
10 TIGR01233 lacG 6-phospho-beta- 100.0 2.1E-83 4.6E-88 637.9 28.3 301 10-328 44-372 (467)
11 PRK09852 cryptic 6-phospho-bet 100.0 1.1E-82 2.4E-87 632.3 28.6 302 10-328 62-370 (474)
12 PF00232 Glyco_hydro_1: Glycos 100.0 8.5E-84 1.8E-88 641.2 20.0 309 2-328 41-360 (455)
13 TIGR03356 BGL beta-galactosida 100.0 1.1E-80 2.4E-85 613.2 28.9 305 2-328 37-342 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 1.5E-12 3.3E-17 127.0 9.0 109 19-133 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.4 3.9E-12 8.5E-17 117.8 10.6 109 20-133 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3.2E-08 6.9E-13 91.7 8.8 83 40-132 1-85 (254)
17 COG1874 LacA Beta-galactosidas 98.6 1.3E-07 2.8E-12 97.6 8.3 117 21-143 32-175 (673)
18 PF07745 Glyco_hydro_53: Glyco 98.5 3.6E-06 7.7E-11 80.8 14.1 142 22-199 27-177 (332)
19 COG2730 BglC Endoglucanase [Ca 98.3 3.7E-06 7.9E-11 83.2 10.5 119 14-132 63-193 (407)
20 PF01229 Glyco_hydro_39: Glyco 98.0 2.6E-05 5.7E-10 78.9 10.6 106 21-133 41-168 (486)
21 PF01301 Glyco_hydro_35: Glyco 97.5 0.00015 3.2E-09 69.6 5.9 108 20-130 25-150 (319)
22 PF01373 Glyco_hydro_14: Glyco 97.3 0.00022 4.7E-09 69.6 4.4 99 18-121 15-144 (402)
23 PLN02161 beta-amylase 97.3 0.0011 2.5E-08 66.0 8.9 109 15-130 113-260 (531)
24 PF00331 Glyco_hydro_10: Glyco 97.3 0.0013 2.8E-08 63.0 8.9 113 14-133 15-137 (320)
25 PLN02803 beta-amylase 97.2 0.0013 2.9E-08 65.8 8.3 104 19-129 107-249 (548)
26 PF14587 Glyco_hydr_30_2: O-Gl 97.2 0.0011 2.3E-08 64.6 7.3 103 29-132 57-185 (384)
27 PLN00197 beta-amylase; Provisi 97.1 0.0018 3.8E-08 65.2 8.5 104 20-130 128-270 (573)
28 PLN03059 beta-galactosidase; P 97.0 0.0038 8.3E-08 66.3 9.9 107 20-130 60-187 (840)
29 PLN02801 beta-amylase 97.0 0.0043 9.3E-08 62.0 9.5 99 18-121 36-173 (517)
30 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.0058 1.3E-07 57.7 9.0 93 17-130 34-132 (298)
31 PLN02905 beta-amylase 96.8 0.0064 1.4E-07 62.1 9.4 101 15-120 282-421 (702)
32 PLN02705 beta-amylase 96.8 0.0073 1.6E-07 61.5 9.3 98 18-120 267-403 (681)
33 PF13204 DUF4038: Protein of u 96.7 0.015 3.2E-07 55.0 10.3 101 25-130 36-156 (289)
34 COG3867 Arabinogalactan endo-1 96.5 0.27 5.8E-06 46.4 17.1 106 22-131 66-182 (403)
35 PRK10150 beta-D-glucuronidase; 96.5 0.013 2.8E-07 60.9 9.2 94 19-131 313-419 (604)
36 PF14488 DUF4434: Domain of un 96.3 0.036 7.7E-07 48.2 9.8 103 20-131 21-131 (166)
37 COG3693 XynA Beta-1,4-xylanase 96.2 0.014 3.1E-07 55.3 7.1 85 40-132 67-153 (345)
38 PRK09525 lacZ beta-D-galactosi 95.0 0.11 2.3E-06 57.5 9.5 94 17-131 369-464 (1027)
39 PRK10340 ebgA cryptic beta-D-g 94.1 0.24 5.1E-06 54.8 9.4 91 17-131 353-451 (1021)
40 KOG0496 Beta-galactosidase [Ca 94.0 0.28 6.2E-06 50.7 9.0 93 20-116 50-154 (649)
41 COG3934 Endo-beta-mannanase [C 92.9 0.061 1.3E-06 53.6 2.1 108 22-132 29-150 (587)
42 COG3664 XynB Beta-xylosidase [ 92.7 0.19 4.1E-06 49.3 5.1 101 28-135 14-119 (428)
43 PF03198 Glyco_hydro_72: Gluca 92.3 0.73 1.6E-05 43.9 8.4 91 19-130 53-145 (314)
44 COG3250 LacZ Beta-galactosidas 92.0 0.77 1.7E-05 49.4 9.2 90 15-131 317-408 (808)
45 smart00642 Aamy Alpha-amylase 89.0 1.5 3.3E-05 37.9 6.9 66 16-81 16-90 (166)
46 PLN02361 alpha-amylase 81.5 3.5 7.6E-05 40.9 6.2 66 16-83 26-100 (401)
47 KOG2233 Alpha-N-acetylglucosam 80.3 5.9 0.00013 40.0 7.1 114 18-131 77-249 (666)
48 PF07488 Glyco_hydro_67M: Glyc 78.8 17 0.00037 34.7 9.3 87 18-119 56-150 (328)
49 cd06543 GH18_PF-ChiA-like PF-C 78.1 11 0.00024 35.8 8.1 78 26-118 19-104 (294)
50 PF02638 DUF187: Glycosyl hydr 77.9 13 0.00028 35.5 8.6 100 19-118 19-154 (311)
51 PF12891 Glyco_hydro_44: Glyco 77.8 14 0.00029 34.1 8.3 117 61-204 24-186 (239)
52 PRK12313 glycogen branching en 77.8 11 0.00025 39.5 8.9 93 18-118 169-302 (633)
53 PRK05402 glycogen branching en 77.5 14 0.00031 39.5 9.7 90 21-118 267-397 (726)
54 PF00128 Alpha-amylase: Alpha 77.2 5.5 0.00012 36.6 5.8 58 22-82 7-73 (316)
55 PLN00196 alpha-amylase; Provis 76.6 4.7 0.0001 40.3 5.4 67 17-83 42-116 (428)
56 cd07945 DRE_TIM_CMS Leptospira 76.6 7.9 0.00017 36.4 6.7 84 20-115 75-158 (280)
57 TIGR03581 EF_0839 conserved hy 76.5 11 0.00023 34.2 7.0 79 12-105 128-229 (236)
58 TIGR02402 trehalose_TreZ malto 76.5 15 0.00033 37.8 9.3 89 21-118 113-237 (542)
59 PF14871 GHL6: Hypothetical gl 76.0 9.6 0.00021 31.7 6.3 56 24-82 5-65 (132)
60 PLN02746 hydroxymethylglutaryl 74.8 10 0.00023 36.8 7.1 86 20-115 122-208 (347)
61 cd02932 OYE_YqiM_FMN Old yello 74.7 82 0.0018 30.2 14.0 40 43-84 61-100 (336)
62 COG3589 Uncharacterized conser 73.0 17 0.00036 35.2 7.7 69 25-109 22-90 (360)
63 cd07939 DRE_TIM_NifV Streptomy 71.8 14 0.0003 34.1 7.0 60 21-81 71-130 (259)
64 PF12876 Cellulase-like: Sugar 71.1 2.4 5.3E-05 32.4 1.5 19 113-131 1-22 (88)
65 cd03174 DRE_TIM_metallolyase D 70.9 14 0.0003 33.7 6.8 83 22-118 77-159 (265)
66 TIGR02090 LEU1_arch isopropylm 70.7 13 0.00028 36.3 6.8 61 21-82 73-133 (363)
67 PLN02784 alpha-amylase 70.2 10 0.00023 41.0 6.4 66 16-83 518-592 (894)
68 PRK05799 coproporphyrinogen II 70.1 8.8 0.00019 37.3 5.5 96 20-133 97-195 (374)
69 TIGR02403 trehalose_treC alpha 70.0 7.4 0.00016 40.1 5.2 66 17-82 25-96 (543)
70 PRK05692 hydroxymethylglutaryl 69.3 18 0.0004 34.1 7.3 86 20-115 80-166 (287)
71 PRK09441 cytoplasmic alpha-amy 69.3 8.4 0.00018 39.0 5.3 68 17-84 20-106 (479)
72 TIGR00612 ispG_gcpE 1-hydroxy- 68.7 47 0.001 32.1 9.8 87 11-113 74-160 (346)
73 PRK10933 trehalose-6-phosphate 67.5 9.3 0.0002 39.5 5.3 62 18-82 32-102 (551)
74 cd07948 DRE_TIM_HCS Saccharomy 67.5 9.9 0.00021 35.4 5.0 61 21-82 73-133 (262)
75 PRK12858 tagatose 1,6-diphosph 67.3 24 0.00052 34.2 7.7 52 25-81 112-163 (340)
76 TIGR01515 branching_enzym alph 67.2 38 0.00082 35.5 9.8 97 22-118 159-288 (613)
77 cd07938 DRE_TIM_HMGL 3-hydroxy 66.7 22 0.00048 33.2 7.3 85 21-115 75-160 (274)
78 PRK09505 malS alpha-amylase; R 66.7 11 0.00023 40.1 5.6 65 21-85 232-318 (683)
79 PRK12568 glycogen branching en 66.0 29 0.00063 37.2 8.6 95 18-118 268-401 (730)
80 cd07944 DRE_TIM_HOA_like 4-hyd 65.6 26 0.00056 32.6 7.4 65 22-115 85-149 (266)
81 PRK14041 oxaloacetate decarbox 65.5 25 0.00054 35.7 7.7 52 17-83 88-144 (467)
82 PRK14706 glycogen branching en 65.3 31 0.00067 36.4 8.7 90 26-118 175-299 (639)
83 PRK04161 tagatose 1,6-diphosph 64.3 38 0.00083 32.6 8.3 59 24-87 112-170 (329)
84 PRK14040 oxaloacetate decarbox 64.3 26 0.00056 36.7 7.8 29 17-45 90-123 (593)
85 COG1523 PulA Type II secretory 63.5 16 0.00035 38.8 6.1 57 25-81 206-285 (697)
86 PRK14705 glycogen branching en 63.4 42 0.00092 38.1 9.6 87 25-118 772-897 (1224)
87 TIGR00433 bioB biotin syntheta 63.2 22 0.00048 33.1 6.6 56 21-81 122-178 (296)
88 cd07937 DRE_TIM_PC_TC_5S Pyruv 63.2 46 0.00099 31.1 8.6 68 21-115 93-160 (275)
89 TIGR02660 nifV_homocitr homoci 63.1 24 0.00053 34.4 7.0 82 21-118 74-155 (365)
90 PRK12399 tagatose 1,6-diphosph 62.8 42 0.00091 32.3 8.2 58 25-87 111-168 (324)
91 TIGR02456 treS_nterm trehalose 62.1 12 0.00026 38.4 4.9 60 18-81 27-96 (539)
92 PF03659 Glyco_hydro_71: Glyco 62.1 40 0.00086 33.3 8.3 51 19-81 17-67 (386)
93 PRK11858 aksA trans-homoaconit 61.1 30 0.00065 33.9 7.3 59 22-81 78-136 (378)
94 cd02874 GH18_CFLE_spore_hydrol 60.9 36 0.00078 32.1 7.6 92 17-118 7-103 (313)
95 PLN02447 1,4-alpha-glucan-bran 59.8 21 0.00045 38.4 6.2 87 24-118 256-383 (758)
96 COG2100 Predicted Fe-S oxidore 59.7 40 0.00088 32.6 7.5 86 15-114 197-284 (414)
97 PRK10785 maltodextrin glucosid 59.7 18 0.00038 37.9 5.7 56 23-82 183-247 (598)
98 PRK12581 oxaloacetate decarbox 58.1 23 0.00049 36.0 5.9 56 17-87 98-158 (468)
99 COG3623 SgaU Putative L-xylulo 57.9 84 0.0018 29.1 8.9 92 19-118 18-148 (287)
100 cd06592 GH31_glucosidase_KIAA1 57.4 88 0.0019 29.6 9.6 105 22-131 33-167 (303)
101 PF10566 Glyco_hydro_97: Glyco 57.0 56 0.0012 30.7 8.0 101 15-116 28-149 (273)
102 PRK09936 hypothetical protein; 56.9 87 0.0019 29.8 9.1 62 21-92 40-101 (296)
103 PRK03705 glycogen debranching 56.9 27 0.00059 37.0 6.5 54 25-81 185-262 (658)
104 PRK14511 maltooligosyl trehalo 56.2 21 0.00045 39.0 5.5 59 18-84 19-94 (879)
105 TIGR03234 OH-pyruv-isom hydrox 56.1 44 0.00095 30.3 7.1 67 18-87 83-150 (254)
106 cd04733 OYE_like_2_FMN Old yel 56.1 1.9E+02 0.0041 27.7 13.5 152 43-218 63-244 (338)
107 PF04646 DUF604: Protein of un 55.8 5.9 0.00013 36.7 1.2 71 65-144 72-148 (255)
108 cd06542 GH18_EndoS-like Endo-b 55.6 46 0.00099 30.3 7.2 55 60-118 50-104 (255)
109 TIGR01210 conserved hypothetic 55.3 62 0.0013 30.8 8.2 110 22-145 117-229 (313)
110 PRK12331 oxaloacetate decarbox 55.0 53 0.0011 33.1 8.0 51 22-87 99-149 (448)
111 cd06593 GH31_xylosidase_YicI Y 54.9 82 0.0018 29.7 9.0 106 21-131 26-161 (308)
112 cd06602 GH31_MGAM_SI_GAA This 54.4 67 0.0015 31.0 8.4 106 22-132 27-168 (339)
113 cd07940 DRE_TIM_IPMS 2-isoprop 53.8 48 0.001 30.7 7.1 81 22-118 72-156 (268)
114 TIGR03471 HpnJ hopanoid biosyn 53.6 47 0.001 33.4 7.4 76 22-112 287-364 (472)
115 PRK09058 coproporphyrinogen II 53.4 48 0.001 33.3 7.4 106 21-144 162-270 (449)
116 PF03511 Fanconi_A: Fanconi an 53.2 10 0.00022 27.3 1.8 39 43-85 19-57 (64)
117 PRK08195 4-hyroxy-2-oxovalerat 52.8 34 0.00073 33.1 6.0 47 22-83 91-137 (337)
118 cd02929 TMADH_HD_FMN Trimethyl 52.6 2.3E+02 0.005 27.6 15.6 131 53-205 75-231 (370)
119 cd06601 GH31_lyase_GLase GLase 52.2 63 0.0014 31.2 7.7 107 25-137 30-141 (332)
120 TIGR02401 trehalose_TreY malto 52.2 26 0.00056 38.0 5.5 67 18-84 15-90 (825)
121 cd06603 GH31_GANC_GANAB_alpha 52.2 53 0.0012 31.6 7.3 110 21-134 26-167 (339)
122 COG1501 Alpha-glucosidases, fa 52.2 54 0.0012 35.5 7.9 99 31-136 294-422 (772)
123 PRK14510 putative bifunctional 51.7 19 0.00042 40.8 4.7 59 23-81 191-267 (1221)
124 cd02803 OYE_like_FMN_family Ol 51.6 1.5E+02 0.0033 27.9 10.3 151 44-218 62-236 (327)
125 TIGR02631 xylA_Arthro xylose i 51.1 1.9E+02 0.0041 28.5 11.0 98 14-120 27-130 (382)
126 cd06600 GH31_MGAM-like This fa 51.0 1E+02 0.0022 29.4 8.9 105 23-132 28-163 (317)
127 TIGR00539 hemN_rel putative ox 51.0 39 0.00084 32.7 6.2 62 20-87 98-162 (360)
128 cd06565 GH20_GcnA-like Glycosy 50.9 80 0.0017 29.9 8.1 66 12-81 7-80 (301)
129 TIGR02100 glgX_debranch glycog 50.7 27 0.00058 37.2 5.3 57 25-81 190-265 (688)
130 PRK08255 salicylyl-CoA 5-hydro 48.6 3.8E+02 0.0082 28.9 14.5 152 43-218 459-646 (765)
131 COG0821 gcpE 1-hydroxy-2-methy 48.0 1.4E+02 0.0031 28.9 9.1 85 13-113 78-162 (361)
132 COG5520 O-Glycosyl hydrolase [ 47.7 58 0.0013 31.9 6.5 94 30-133 77-181 (433)
133 PRK12677 xylose isomerase; Pro 47.7 2E+02 0.0043 28.3 10.6 92 20-120 32-129 (384)
134 PLN02960 alpha-amylase 47.6 41 0.00089 36.7 6.1 94 17-118 414-549 (897)
135 cd06545 GH18_3CO4_chitinase Th 47.3 56 0.0012 29.8 6.3 73 39-118 27-99 (253)
136 PRK00366 ispG 4-hydroxy-3-meth 47.0 1.1E+02 0.0023 30.0 8.2 72 29-113 98-169 (360)
137 TIGR01232 lacD tagatose 1,6-di 46.8 95 0.0021 29.9 7.8 60 24-88 111-170 (325)
138 cd07943 DRE_TIM_HOA 4-hydroxy- 46.6 51 0.0011 30.4 6.0 46 22-82 88-133 (263)
139 cd06591 GH31_xylosidase_XylS X 46.5 1.3E+02 0.0028 28.6 8.9 109 22-133 27-163 (319)
140 cd06599 GH31_glycosidase_Aec37 46.5 1.6E+02 0.0034 28.0 9.5 110 22-132 32-171 (317)
141 cd07947 DRE_TIM_Re_CS Clostrid 45.9 82 0.0018 29.6 7.3 61 20-81 75-135 (279)
142 TIGR01108 oadA oxaloacetate de 45.9 86 0.0019 32.8 8.0 51 22-87 94-144 (582)
143 TIGR03217 4OH_2_O_val_ald 4-hy 45.9 67 0.0014 31.0 6.8 47 21-82 89-135 (333)
144 COG3534 AbfA Alpha-L-arabinofu 45.7 1.2E+02 0.0027 30.6 8.6 95 21-130 50-174 (501)
145 TIGR01211 ELP3 histone acetylt 45.5 85 0.0018 32.4 7.8 107 21-145 205-316 (522)
146 COG0366 AmyA Glycosidases [Car 44.8 29 0.00062 34.6 4.3 61 23-83 33-101 (505)
147 KOG1065 Maltase glucoamylase a 44.8 1.1E+02 0.0024 33.1 8.6 103 25-135 317-454 (805)
148 PF05089 NAGLU: Alpha-N-acetyl 44.2 42 0.00091 32.5 5.0 112 18-131 18-185 (333)
149 cd06598 GH31_transferase_CtsZ 44.1 1.6E+02 0.0034 28.0 9.0 110 22-133 27-168 (317)
150 TIGR01212 radical SAM protein, 44.1 61 0.0013 30.7 6.2 73 60-145 162-234 (302)
151 cd07941 DRE_TIM_LeuA3 Desulfob 43.7 41 0.0009 31.3 4.9 61 23-84 82-142 (273)
152 PF02065 Melibiase: Melibiase; 42.9 2.6E+02 0.0056 27.7 10.5 88 23-118 62-183 (394)
153 PRK07379 coproporphyrinogen II 42.4 1.1E+02 0.0024 30.1 8.0 104 20-142 113-220 (400)
154 PLN03153 hypothetical protein; 42.0 30 0.00066 35.4 3.9 69 69-146 326-401 (537)
155 PRK13398 3-deoxy-7-phosphohept 42.0 88 0.0019 29.2 6.8 72 14-90 36-107 (266)
156 PLN02389 biotin synthase 41.6 84 0.0018 30.9 6.9 57 20-81 176-233 (379)
157 PF10566 Glyco_hydro_97: Glyco 41.5 50 0.0011 31.0 5.0 69 21-102 108-176 (273)
158 PF00682 HMGL-like: HMGL-like 40.7 75 0.0016 28.5 6.0 76 26-116 74-149 (237)
159 cd02742 GH20_hexosaminidase Be 40.3 85 0.0019 29.6 6.6 63 21-89 18-97 (303)
160 PF07071 DUF1341: Protein of u 39.7 77 0.0017 28.5 5.6 82 2-115 116-200 (218)
161 PRK09856 fructoselysine 3-epim 39.3 41 0.00089 30.8 4.1 61 17-80 88-148 (275)
162 PRK14507 putative bifunctional 38.7 58 0.0012 38.3 5.8 68 18-85 757-833 (1693)
163 PF04914 DltD_C: DltD C-termin 38.5 92 0.002 25.9 5.7 56 61-120 36-91 (130)
164 PRK08599 coproporphyrinogen II 38.4 1.4E+02 0.003 29.1 7.8 95 20-133 98-196 (377)
165 PTZ00445 p36-lilke protein; Pr 38.2 64 0.0014 29.3 5.0 56 25-82 35-99 (219)
166 TIGR02104 pulA_typeI pullulana 38.0 73 0.0016 33.3 6.2 59 60-118 228-312 (605)
167 smart00729 Elp3 Elongator prot 37.5 2.1E+02 0.0045 24.1 8.2 59 18-81 96-157 (216)
168 cd06412 GH25_CH-type CH-type ( 37.4 1.4E+02 0.003 26.2 7.1 51 23-87 13-63 (199)
169 TIGR00542 hxl6Piso_put hexulos 37.4 66 0.0014 29.6 5.2 61 18-81 93-153 (279)
170 TIGR02635 RhaI_grampos L-rhamn 37.0 1.8E+02 0.004 28.6 8.4 93 12-124 34-136 (378)
171 cd00019 AP2Ec AP endonuclease 36.9 2.2E+02 0.0049 26.0 8.8 55 19-80 10-65 (279)
172 PRK05628 coproporphyrinogen II 36.9 1.9E+02 0.004 28.1 8.5 95 20-133 106-204 (375)
173 PF04055 Radical_SAM: Radical 36.0 72 0.0016 25.7 4.8 52 22-77 90-143 (166)
174 TIGR00542 hxl6Piso_put hexulos 35.6 2.8E+02 0.0061 25.4 9.2 55 19-79 16-70 (279)
175 PRK13209 L-xylulose 5-phosphat 35.2 3.5E+02 0.0076 24.7 10.1 54 20-79 22-75 (283)
176 cd06525 GH25_Lyc-like Lyc mura 34.6 2.5E+02 0.0055 24.1 8.2 51 23-87 12-62 (184)
177 cd06413 GH25_muramidase_1 Unch 34.3 2.2E+02 0.0048 24.7 7.8 54 17-85 10-63 (191)
178 PRK01060 endonuclease IV; Prov 34.1 2.2E+02 0.0047 26.0 8.2 52 19-77 12-63 (281)
179 PRK10605 N-ethylmaleimide redu 33.8 4.5E+02 0.0098 25.5 15.9 193 53-269 71-321 (362)
180 cd06419 GH25_muramidase_2 Unch 33.5 1.8E+02 0.0038 25.6 7.0 89 23-125 20-134 (190)
181 PLN02925 4-hydroxy-3-methylbut 33.0 1.3E+02 0.0028 32.1 6.8 51 62-113 211-261 (733)
182 PF01261 AP_endonuc_2: Xylose 32.5 47 0.001 28.4 3.2 63 18-81 70-132 (213)
183 PRK09282 pyruvate carboxylase 32.2 1.9E+02 0.0041 30.4 8.0 45 22-81 99-143 (592)
184 PRK09856 fructoselysine 3-epim 32.0 2.3E+02 0.005 25.7 7.9 52 20-79 14-65 (275)
185 PTZ00445 p36-lilke protein; Pr 32.0 94 0.002 28.2 5.0 50 61-114 29-88 (219)
186 PRK07094 biotin synthase; Prov 31.9 75 0.0016 30.1 4.7 57 20-81 127-185 (323)
187 TIGR00587 nfo apurinic endonuc 31.7 1.6E+02 0.0034 27.2 6.8 87 21-120 13-103 (274)
188 COG5520 O-Glycosyl hydrolase [ 31.6 1.6E+02 0.0036 28.9 6.8 74 60-135 152-236 (433)
189 cd06570 GH20_chitobiase-like_1 31.3 2E+02 0.0044 27.4 7.5 72 12-89 9-93 (311)
190 TIGR03586 PseI pseudaminic aci 31.0 98 0.0021 29.9 5.3 72 12-83 7-99 (327)
191 PRK09997 hydroxypyruvate isome 30.8 2E+02 0.0043 26.1 7.2 64 21-87 87-151 (258)
192 PF10107 Endonuc_Holl: Endonuc 30.7 42 0.00092 28.7 2.4 42 229-274 71-114 (156)
193 KOG0470 1,4-alpha-glucan branc 30.5 71 0.0015 34.1 4.5 65 18-83 253-333 (757)
194 PF09314 DUF1972: Domain of un 30.5 80 0.0017 27.9 4.3 43 70-120 114-156 (185)
195 TIGR00674 dapA dihydrodipicoli 29.9 2.6E+02 0.0056 26.0 8.0 62 52-127 13-74 (285)
196 cd06568 GH20_SpHex_like A subg 29.8 1.9E+02 0.0041 27.8 7.1 74 11-90 8-101 (329)
197 cd00950 DHDPS Dihydrodipicolin 29.8 2.5E+02 0.0054 25.9 7.8 60 52-125 15-74 (284)
198 PF13812 PPR_3: Pentatricopept 29.7 36 0.00078 20.0 1.4 15 63-77 20-34 (34)
199 PRK10426 alpha-glucosidase; Pr 29.6 4.2E+02 0.0091 28.0 10.2 107 21-130 223-364 (635)
200 cd01335 Radical_SAM Radical SA 29.4 77 0.0017 26.3 4.0 59 21-81 87-145 (204)
201 TIGR00538 hemN oxygen-independ 29.0 47 0.001 33.3 2.9 62 20-87 149-213 (455)
202 PRK13210 putative L-xylulose 5 28.9 4.3E+02 0.0094 23.9 9.3 54 20-79 17-70 (284)
203 PRK13210 putative L-xylulose 5 28.7 1E+02 0.0022 28.2 5.0 60 19-82 94-154 (284)
204 PRK00230 orotidine 5'-phosphat 28.3 70 0.0015 29.0 3.7 61 13-88 7-67 (230)
205 PRK13523 NADPH dehydrogenase N 28.3 5.4E+02 0.012 24.7 12.3 142 53-218 73-235 (337)
206 COG2876 AroA 3-deoxy-D-arabino 28.1 2.9E+02 0.0063 26.0 7.6 82 11-113 51-132 (286)
207 TIGR02159 PA_CoA_Oxy4 phenylac 28.1 72 0.0016 27.1 3.4 55 13-78 36-91 (146)
208 smart00052 EAL Putative diguan 27.5 1.5E+02 0.0033 25.9 5.7 63 11-80 147-209 (241)
209 PRK06256 biotin synthase; Vali 27.4 1.1E+02 0.0024 29.1 5.1 56 20-80 150-206 (336)
210 cd06562 GH20_HexA_HexB-like Be 26.8 1.7E+02 0.0036 28.3 6.2 73 11-89 8-95 (348)
211 PRK12755 phospho-2-dehydro-3-d 26.8 2.4E+02 0.0053 27.5 7.2 76 15-90 64-154 (353)
212 PRK06294 coproporphyrinogen II 26.8 3.5E+02 0.0075 26.3 8.5 95 21-133 102-199 (370)
213 PF03102 NeuB: NeuB family; I 26.6 87 0.0019 28.8 4.0 59 25-83 2-78 (241)
214 PRK08446 coproporphyrinogen II 26.6 3.6E+02 0.0077 26.0 8.5 92 21-131 97-192 (350)
215 TIGR01856 hisJ_fam histidinol 26.5 2.1E+02 0.0047 26.0 6.7 59 62-122 16-77 (253)
216 PRK09389 (R)-citramalate synth 26.3 1.1E+02 0.0024 31.2 5.1 62 21-83 75-136 (488)
217 cd06595 GH31_xylosidase_XylS-l 26.0 2.4E+02 0.0051 26.5 7.0 110 23-133 29-163 (292)
218 PRK12595 bifunctional 3-deoxy- 25.9 1.6E+02 0.0035 28.8 5.9 65 14-83 127-191 (360)
219 PRK09249 coproporphyrinogen II 25.8 2.3E+02 0.005 28.4 7.2 62 20-87 149-213 (453)
220 COG3916 LasI N-acyl-L-homoseri 25.5 88 0.0019 28.2 3.6 60 22-83 80-146 (209)
221 PRK08208 coproporphyrinogen II 25.4 2.7E+02 0.0058 27.7 7.5 62 20-87 139-203 (430)
222 PF04028 DUF374: Domain of unk 25.4 2.9E+02 0.0062 20.5 5.9 40 26-81 27-66 (74)
223 PF01120 Alpha_L_fucos: Alpha- 25.0 1.4E+02 0.003 28.8 5.3 59 25-85 97-162 (346)
224 PRK12330 oxaloacetate decarbox 24.9 2.9E+02 0.0062 28.4 7.7 96 22-131 100-212 (499)
225 PRK12454 carbamate kinase-like 24.8 1.8E+02 0.0039 27.9 5.9 56 17-80 135-191 (313)
226 PF01055 Glyco_hydro_31: Glyco 24.7 3.5E+02 0.0075 26.7 8.2 108 21-133 45-184 (441)
227 TIGR02495 NrdG2 anaerobic ribo 24.6 1.6E+02 0.0035 25.2 5.2 56 22-81 102-160 (191)
228 PRK13347 coproporphyrinogen II 24.5 1.3E+02 0.0028 30.2 5.1 94 22-131 152-246 (453)
229 cd01948 EAL EAL domain. This d 24.5 1.5E+02 0.0033 25.8 5.2 63 11-80 146-208 (240)
230 TIGR02629 L_rham_iso_rhiz L-rh 24.5 2.8E+02 0.006 27.8 7.2 89 21-125 72-171 (412)
231 PF02055 Glyco_hydro_30: O-Gly 24.4 94 0.002 31.8 4.1 102 30-133 111-236 (496)
232 cd02877 GH18_hevamine_XipI_cla 24.4 1.5E+02 0.0033 27.8 5.3 48 62-119 60-107 (280)
233 cd00408 DHDPS-like Dihydrodipi 24.1 4E+02 0.0087 24.4 8.1 61 52-126 12-72 (281)
234 PRK11572 copper homeostasis pr 24.0 2.2E+02 0.0048 26.4 6.1 42 18-70 72-113 (248)
235 TIGR00419 tim triosephosphate 23.9 2.1E+02 0.0046 25.6 5.9 44 25-81 74-117 (205)
236 PRK05660 HemN family oxidoredu 23.8 3.6E+02 0.0079 26.2 8.0 94 20-131 105-201 (378)
237 PRK08207 coproporphyrinogen II 23.5 87 0.0019 31.9 3.7 62 21-87 268-331 (488)
238 PF00563 EAL: EAL domain; Int 23.5 1E+02 0.0023 26.8 3.9 61 12-80 149-209 (236)
239 TIGR02102 pullulan_Gpos pullul 23.4 2.1E+02 0.0046 32.4 6.9 22 60-81 554-575 (1111)
240 PRK12822 phospho-2-dehydro-3-d 23.3 1.7E+02 0.0036 28.6 5.3 63 20-82 68-145 (356)
241 PF04007 DUF354: Protein of un 23.3 1.1E+02 0.0023 29.7 4.1 40 55-94 8-47 (335)
242 COG3684 LacD Tagatose-1,6-bisp 23.2 1.3E+02 0.0029 28.2 4.4 56 24-85 116-171 (306)
243 TIGR02109 PQQ_syn_pqqE coenzym 23.1 3.3E+02 0.0072 26.0 7.6 65 13-81 86-152 (358)
244 cd01990 Alpha_ANH_like_I This 22.9 3.7E+02 0.008 23.2 7.3 58 26-85 46-106 (202)
245 PRK13209 L-xylulose 5-phosphat 22.8 1.4E+02 0.003 27.4 4.6 57 18-81 98-158 (283)
246 PF01261 AP_endonuc_2: Xylose 22.8 2.2E+02 0.0048 24.1 5.8 45 25-79 1-45 (213)
247 PF08059 SEP: SEP domain; Int 22.4 50 0.0011 24.6 1.3 36 195-243 7-42 (75)
248 PF11790 Glyco_hydro_cc: Glyco 22.2 69 0.0015 29.2 2.4 24 108-132 54-77 (239)
249 PF02057 Glyco_hydro_59: Glyco 22.2 1.6E+02 0.0035 31.3 5.3 64 65-131 116-184 (669)
250 PRK12354 carbamate kinase; Rev 22.2 1.9E+02 0.004 27.7 5.4 56 17-80 126-181 (307)
251 PRK14567 triosephosphate isome 22.2 2.4E+02 0.0053 26.2 6.0 49 25-82 78-126 (253)
252 PHA02769 hypothetical protein; 22.1 1.4E+02 0.0031 24.4 3.9 38 59-97 97-134 (154)
253 cd06563 GH20_chitobiase-like T 22.0 2.5E+02 0.0053 27.2 6.4 73 11-89 8-111 (357)
254 PRK03892 ribonuclease P protei 21.9 2.5E+02 0.0054 25.5 5.8 90 24-116 119-215 (216)
255 cd02930 DCR_FMN 2,4-dienoyl-Co 21.7 7.2E+02 0.016 23.8 12.9 142 53-218 69-232 (353)
256 cd06522 GH25_AtlA-like AtlA is 21.7 4.3E+02 0.0093 23.0 7.4 49 23-87 16-66 (192)
257 TIGR02630 xylose_isom_A xylose 21.6 8.4E+02 0.018 24.6 13.4 69 24-101 83-156 (434)
258 PRK03170 dihydrodipicolinate s 21.6 4.4E+02 0.0096 24.4 7.9 62 52-127 16-77 (292)
259 cd02871 GH18_chitinase_D-like 21.5 3.4E+02 0.0073 25.7 7.1 50 62-118 61-110 (312)
260 PRK00164 moaA molybdenum cofac 21.1 4.9E+02 0.011 24.5 8.2 54 21-79 107-163 (331)
261 PRK13505 formate--tetrahydrofo 20.8 1.2E+02 0.0026 31.4 4.0 30 57-86 355-384 (557)
262 PLN02417 dihydrodipicolinate s 20.8 5E+02 0.011 24.1 8.0 61 52-126 16-76 (280)
263 cd07396 MPP_Nbla03831 Homo sap 20.7 2.6E+02 0.0056 25.6 6.0 31 53-83 158-188 (267)
264 PF03129 HGTP_anticodon: Antic 20.7 1.6E+02 0.0034 22.0 3.9 26 56-81 11-36 (94)
265 COG3570 StrB Streptomycin 6-ki 20.5 50 0.0011 30.2 1.1 26 287-312 162-190 (274)
266 cd06604 GH31_glucosidase_II_Ma 20.5 5.1E+02 0.011 24.7 8.2 107 21-133 26-163 (339)
267 TIGR02883 spore_cwlD N-acetylm 20.5 3E+02 0.0066 23.8 6.1 60 26-87 37-96 (189)
268 PRK08508 biotin synthase; Prov 20.5 2.2E+02 0.0048 26.5 5.5 56 21-81 101-157 (279)
269 TIGR00423 radical SAM domain p 20.2 1.1E+02 0.0023 29.0 3.4 53 21-81 106-165 (309)
270 PF14806 Coatomer_b_Cpla: Coat 20.1 91 0.002 25.9 2.5 74 201-277 16-90 (129)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-98 Score=732.16 Aligned_cols=326 Identities=55% Similarity=1.008 Sum_probs=301.9
Q ss_pred CccccCCCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
||++.++++||+|||+||||+|||+|||+||+++|||||+||||+|.|+..+.+|++||+||+++|++|+++||+|+|||
T Consensus 74 p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 74 PGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred CcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56677888999999999999999999999999999999999999999965578999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 020130 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (330)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (330)
+|||+||+|+++||||+|++++++|.+||+.||++|||+||.|+|||||++++..||..|..|||+|+.+..+|..|+|+
T Consensus 154 fHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~ 233 (524)
T KOG0626|consen 154 FHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSG 233 (524)
T ss_pred ecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876799999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHH
Q 020130 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (330)
Q Consensus 162 ~~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~ 241 (330)
+++|+|.||||||||+||++||++++..|+|+|||++...|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|+
T Consensus 234 ~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk 313 (524)
T KOG0626|consen 234 TEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMK 313 (524)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999989999999999
Q ss_pred HhhcCCCCCCCHhHHhhcCCCccEEEEecccCceeecccC-CCCCCCCcCCCCccee----------cccCCceeccCCC
Q 020130 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTS-FSNTNFSYTTDSRVNR----------TNGFGLAFHLPEG 310 (330)
Q Consensus 242 ~~~~~~lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~-~~~~~~~~~~~~~~~~----------~~~~g~~~~~P~G 310 (330)
+.+++|||+||+||.++|||+.||+|||||++.+|++.+. .+.....+..|....+ .+...|..++|||
T Consensus 314 ~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~G 393 (524)
T KOG0626|consen 314 ERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWG 393 (524)
T ss_pred HHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccccccccccceeeccHH
Confidence 9999999999999999999999999999999999998654 2223334444433332 1124588899999
Q ss_pred chhhhHhhHhhhccCCC
Q 020130 311 NSRTFAVSKEKIQSSSH 327 (330)
Q Consensus 311 ~~~~l~~~~~~y~~p~~ 327 (330)
+|.+|+++|++|++|..
T Consensus 394 lr~~L~yiK~~Y~np~i 410 (524)
T KOG0626|consen 394 LRKLLNYIKDKYGNPPI 410 (524)
T ss_pred HHHHHHHHHhhcCCCcE
Confidence 99999999999999964
No 2
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-89 Score=665.91 Aligned_cols=311 Identities=35% Similarity=0.624 Sum_probs=280.0
Q ss_pred CccccCCCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
|+++..+.++++||||||||+|||+|||+||+++|||||+||||+|+++ .+.+|++||+||+++||+|+++||+|+|||
T Consensus 42 ~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL 120 (460)
T COG2723 42 PGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTL 120 (460)
T ss_pred CCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 6777788999999999999999999999999999999999999999986 138999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 020130 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (330)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (330)
+|||+|+||+++||||+||+++++|++||++||++|||+|++|+||||||+++..||+.|.+||+..+.
T Consensus 121 ~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~----------- 189 (460)
T COG2723 121 YHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDP----------- 189 (460)
T ss_pred cccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHH
Q 020130 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (330)
Q Consensus 162 ~~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~ 241 (330)
+.++||+||+++|||+||+++|+..+ +.+||||++..+.||.|++|+|+.||++++.+.+++|+||+++|+||.++.
T Consensus 190 ~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~ 266 (460)
T COG2723 190 KAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLE 266 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHH
Confidence 68899999999999999999999853 339999999999999999999999999999999999999999999999999
Q ss_pred HhhcCC--CCCCCHhHHhhcC-CCccEEEEeccc-CceeecccCC-CC-CCCCcCCCCccee--cccCCceeccCCCchh
Q 020130 242 HLVGNR--LPKFTKSQAEMVK-GSVDFLGLNYYT-ADYAEEVTSF-SN-TNFSYTTDSRVNR--TNGFGLAFHLPEGNSR 313 (330)
Q Consensus 242 ~~~~~~--lp~~t~~d~~~ik-g~~DFiGiNYYt-s~~v~~~~~~-~~-~~~~~~~~~~~~~--~~~~g~~~~~P~G~~~ 313 (330)
+.+++. +|+++++|+++|| +++||||||||+ |.+++..+.. .. ....+.....++. +++|||+ |+|+||++
T Consensus 267 ~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWe-I~P~GL~~ 345 (460)
T COG2723 267 KELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWE-IYPKGLYD 345 (460)
T ss_pred HHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCce-eChHHHHH
Confidence 999876 7999999999998 689999999999 5655554432 11 1122223333332 3479999 69999999
Q ss_pred hhHhhHhhhccCCCC
Q 020130 314 TFAVSKEKIQSSSHL 328 (330)
Q Consensus 314 ~l~~~~~~y~~p~~~ 328 (330)
+|+.+++|||+|+||
T Consensus 346 ~l~~~~~rY~~p~fI 360 (460)
T COG2723 346 ILEKLYERYGIPLFI 360 (460)
T ss_pred HHHHHHHHhCCCeEE
Confidence 999999999999998
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=3.9e-89 Score=682.39 Aligned_cols=318 Identities=42% Similarity=0.811 Sum_probs=283.0
Q ss_pred CCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 8 HSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 8 ~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
+.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|
T Consensus 68 ~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~--g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 68 MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGR--GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred CCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 4588999999999999999999999999999999999999986 89999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHH
Q 020130 88 QALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVA 167 (330)
Q Consensus 88 ~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (330)
+||+++||||+|++++++|++||+.||++|||+|++|+|||||++++..||..|.+|||.+......|..+++.++.+++
T Consensus 146 ~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a 225 (503)
T PLN02849 146 QYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIV 225 (503)
T ss_pred HHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999754211245555666789999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcCC
Q 020130 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (330)
Q Consensus 168 ~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~~ 247 (330)
+||+++|||+||+++|++++..|+++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.++++
T Consensus 226 ~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 305 (503)
T PLN02849 226 GHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSR 305 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcC
Confidence 99999999999999999765447899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCHhHHhhcCCCccEEEEecccCceeecccCCC--CCCCCcCCCCcc--eecccCCceeccCCCchhhhHhhHhhhc
Q 020130 248 LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFS--NTNFSYTTDSRV--NRTNGFGLAFHLPEGNSRTFAVSKEKIQ 323 (330)
Q Consensus 248 lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~~--~~~~~~~~~~~~--~~~~~~g~~~~~P~G~~~~l~~~~~~y~ 323 (330)
+|.|+++|+++|++++||||||||++.+|+..+... ....++...... +.++++||+ ++|+||+.+|+++++||+
T Consensus 306 lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~-i~P~Gl~~~L~~~~~rY~ 384 (503)
T PLN02849 306 LPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYA-VAPWAMESVLEYIKQSYG 384 (503)
T ss_pred CCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCe-EChHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998632111 001112122222 234569998 699999999999999999
Q ss_pred c-CCCC
Q 020130 324 S-SSHL 328 (330)
Q Consensus 324 ~-p~~~ 328 (330)
+ |++|
T Consensus 385 ~pPi~I 390 (503)
T PLN02849 385 NPPVYI 390 (503)
T ss_pred CCCEEE
Confidence 9 6876
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=9.1e-89 Score=678.88 Aligned_cols=317 Identities=45% Similarity=0.816 Sum_probs=281.6
Q ss_pred CCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCch
Q 020130 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (330)
Q Consensus 9 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (330)
.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGR--GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 478999999999999999999999999999999999999986 889999999999999999999999999999999999
Q ss_pred hhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCC-CCCCCCCCCCChHHHH
Q 020130 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNY-IGNCPAGNSATEPYVA 167 (330)
Q Consensus 89 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~ 167 (330)
||+++||||+|+++++.|++||++||++|||+|++|+|||||++++..||..|.+|||+++.. ...|..+++.++.+++
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975421 0136666666789999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcCC
Q 020130 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (330)
Q Consensus 168 ~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~~ 247 (330)
+||+++|||+||+++|++++..|+++|||+++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.++++
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 309 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSR 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcC
Confidence 99999999999999999876567899999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCHhHHhhcCCCccEEEEecccCceeecccCC-CCCCCCcCCCCcc------eecccCCceeccCCCchhhhHhhHh
Q 020130 248 LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSF-SNTNFSYTTDSRV------NRTNGFGLAFHLPEGNSRTFAVSKE 320 (330)
Q Consensus 248 lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~-~~~~~~~~~~~~~------~~~~~~g~~~~~P~G~~~~l~~~~~ 320 (330)
+|.||++|+++|++++||||||||+|.+|+..+.. ......+..+... +.+.++||+ ++|+|++.+|+++++
T Consensus 310 lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-i~P~Gl~~~L~~~~~ 388 (497)
T PLN02998 310 LPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYA-NTPWSLQQILLYVKE 388 (497)
T ss_pred CCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCE-EChHHHHHHHHHHHH
Confidence 99999999999999999999999999999763321 1100111111111 122248998 699999999999999
Q ss_pred hhcc-CCCC
Q 020130 321 KIQS-SSHL 328 (330)
Q Consensus 321 ~y~~-p~~~ 328 (330)
+|++ |++|
T Consensus 389 rY~~ppI~I 397 (497)
T PLN02998 389 TYGNPPVYI 397 (497)
T ss_pred HcCCCCEEE
Confidence 9999 5876
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.1e-88 Score=677.26 Aligned_cols=318 Identities=41% Similarity=0.778 Sum_probs=281.5
Q ss_pred CCCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 020130 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (330)
Q Consensus 7 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (330)
++.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++||+|+++||+|+|||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~--g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGR--GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 35689999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCC-CCCCCCCCCCChHH
Q 020130 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNY-IGNCPAGNSATEPY 165 (330)
Q Consensus 87 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~ 165 (330)
|+||+++||||+|+++++.|++||+.||++|||+|++|+|||||++++..||..|.. ||+++.. ...|.++++.++++
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999884 8865421 12465556667899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhc
Q 020130 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG 245 (330)
Q Consensus 166 ~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~ 245 (330)
+++||+++|||+||+++|++++..|+++||++++..++||.+++|+|+.||++++++.++||+||+++|+||+.|++.++
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~ 301 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLG 301 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHh
Confidence 99999999999999999998766678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhHHhhcCCCccEEEEecccCceeecccCCC---CCCCCcCCCCc---ce--ecccCCceeccCCCchhhhHh
Q 020130 246 NRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFS---NTNFSYTTDSR---VN--RTNGFGLAFHLPEGNSRTFAV 317 (330)
Q Consensus 246 ~~lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~~---~~~~~~~~~~~---~~--~~~~~g~~~~~P~G~~~~l~~ 317 (330)
+++|.||++|+++|++++||||||||+|.+|+..+... ....++..+.+ .+ -++.+||+ ++|+|++.+|++
T Consensus 302 ~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWe-i~P~Gl~~~L~~ 380 (504)
T PLN02814 302 SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFD-ATPWGLEGILEH 380 (504)
T ss_pred cCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCe-ECcHHHHHHHHH
Confidence 99999999999999999999999999999997533110 00111111111 11 23459999 699999999999
Q ss_pred hHhhhcc-CCCC
Q 020130 318 SKEKIQS-SSHL 328 (330)
Q Consensus 318 ~~~~y~~-p~~~ 328 (330)
++++|++ |++|
T Consensus 381 ~~~rY~~ppI~I 392 (504)
T PLN02814 381 IKQSYNNPPIYI 392 (504)
T ss_pred HHHhcCCCCEEE
Confidence 9999998 6886
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-84 Score=647.77 Aligned_cols=303 Identities=25% Similarity=0.409 Sum_probs=264.5
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .|.+|++||+||+++||+|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 68999999999999999999999999999999999999975 25699999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHH
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (330)
|+++||||+|+++++.|++||++||++|||+|++|+|||||++++..||. .|. +|||..+ .++++++
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99999999999999999999999999999999999999999999988886 454 3666422 2568999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcC-
Q 020130 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN- 246 (330)
Q Consensus 168 ~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~- 246 (330)
+||+++|||+||+++|+.. |++|||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|++.+++
T Consensus 212 ~h~~llAHa~A~~~~~~~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 212 AHHELVASAIATKIAHEVD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 9999999999999999863 6799999999999999999999999999987 4589999999999999999999975
Q ss_pred -CCCCCCHhHHhhcC-CCccEEEEecccCceeecccCCCCC-CCCcCCCCcce-e-cccCCceeccCCCchhhhHhhHhh
Q 020130 247 -RLPKFTKSQAEMVK-GSVDFLGLNYYTADYAEEVTSFSNT-NFSYTTDSRVN-R-TNGFGLAFHLPEGNSRTFAVSKEK 321 (330)
Q Consensus 247 -~lp~~t~~d~~~ik-g~~DFiGiNYYts~~v~~~~~~~~~-~~~~~~~~~~~-~-~~~~g~~~~~P~G~~~~l~~~~~~ 321 (330)
.+|.||++|+++|| +++||||||||||.+|+..+..... ..+.......+ . .++|||+ ++|+||+.+|+++++|
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~ 366 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQ-IDPLGLRITLNTIWDR 366 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCE-ECHHHHHHHHHHHHHH
Confidence 36899999999997 9999999999999999864311110 00110111112 1 3459999 6999999999999999
Q ss_pred hccCCCCC
Q 020130 322 IQSSSHLH 329 (330)
Q Consensus 322 y~~p~~~~ 329 (330)
|++|++|.
T Consensus 367 Y~~Pi~It 374 (478)
T PRK09593 367 YQKPMFIV 374 (478)
T ss_pred cCCCEEEE
Confidence 99999874
No 7
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.2e-84 Score=645.80 Aligned_cols=300 Identities=27% Similarity=0.474 Sum_probs=260.0
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 57999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCcccccc-----ccc-cCc-cCCCCCCCCCCCCCCCCCCC
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC-----GYA-KGT-KAPGRCSNYIGNCPAGNSAT 162 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~ 162 (330)
|+++||||+|+++++.|++||++||++|||+|++|+|||||++++.. ||. .|. +|||... .+
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999998776 444 343 3555321 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHH
Q 020130 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (330)
Q Consensus 163 ~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~ 242 (330)
..++++||+++|||+||+++|++. |+++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEIN---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHH
Confidence 579999999999999999999974 568999999999999999999999999998854 7799999999999999999
Q ss_pred hhcCC--CCCCCHhHHhhc-CCCccEEEEecccCceeecccCCCCCCCCcCCC---Ccce--ecccCCceeccCCCchhh
Q 020130 243 LVGNR--LPKFTKSQAEMV-KGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTD---SRVN--RTNGFGLAFHLPEGNSRT 314 (330)
Q Consensus 243 ~~~~~--lp~~t~~d~~~i-kg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~~---~~~~--~~~~~g~~~~~P~G~~~~ 314 (330)
.++++ .|+||++|+++| ++++||||||||+|.+|+..+.... .++..+ ..++ -+++|||+ ++|+||+.+
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gw~-i~P~Gl~~~ 358 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQ--LDYVETRDLVSNPYVKASEWGWQ-IDPAGLRYS 358 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCC--CCcccccccccCCCcccCCCCCc-cCcHHHHHH
Confidence 99864 489999999999 5999999999999999975321110 011111 1122 13459998 699999999
Q ss_pred hHhhHhhhccCCCC
Q 020130 315 FAVSKEKIQSSSHL 328 (330)
Q Consensus 315 l~~~~~~y~~p~~~ 328 (330)
|++++++|++|++|
T Consensus 359 L~~~~~~Y~~Pi~I 372 (476)
T PRK09589 359 LNWFWDHYQLPLFI 372 (476)
T ss_pred HHHHHHhcCCCEEE
Confidence 99999999999886
No 8
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.8e-83 Score=637.63 Aligned_cols=302 Identities=25% Similarity=0.421 Sum_probs=261.2
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+|||+||+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc-----ccccccc-Ccc-CCCCCCCCCCCCCCCCCCC
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV-----GECGYAK-GTK-APGRCSNYIGNCPAGNSAT 162 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~ 162 (330)
|+++||||+|+++++.|++||++||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +.+
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhH
Confidence 99999999999999999999999999999999999999999987 6778874 665 44321 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHH
Q 020130 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (330)
Q Consensus 163 ~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~ 242 (330)
+.++++||+++|||+||+++|++. |+++||++++..++||.+++|+|++||++++. ...||+||+++|+||+.|++
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHH
Confidence 689999999999999999999975 56999999999999999999999999998773 23459999999999999999
Q ss_pred hhcCCC--CCCCHhHHhhcC-CCccEEEEecccCceeecccCCCCCCCCcCCCCcce-e-cccCCceeccCCCchhhhHh
Q 020130 243 LVGNRL--PKFTKSQAEMVK-GSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVN-R-TNGFGLAFHLPEGNSRTFAV 317 (330)
Q Consensus 243 ~~~~~l--p~~t~~d~~~ik-g~~DFiGiNYYts~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~~~P~G~~~~l~~ 317 (330)
.+++++ |+++++|+++|+ +++||||||||+|.+|+..+........+.....++ . .++|||+ ++|+||+.+|++
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~-i~P~Gl~~~l~~ 362 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQ-IDPVGLRYALCE 362 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCc-cCcHHHHHHHHH
Confidence 998764 789999999994 999999999999999975321100001111111122 1 3459999 699999999999
Q ss_pred hHhhhccCCCC
Q 020130 318 SKEKIQSSSHL 328 (330)
Q Consensus 318 ~~~~y~~p~~~ 328 (330)
+++||++|++|
T Consensus 363 ~~~~Y~~Pi~I 373 (477)
T PRK15014 363 LYERYQKPLFI 373 (477)
T ss_pred HHHhcCCCEEE
Confidence 99999999886
No 9
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.1e-83 Score=638.93 Aligned_cols=301 Identities=30% Similarity=0.523 Sum_probs=264.2
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+|||+||+++|||||+||||+|+|+ |.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 122 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGY--GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEA 122 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHH
Confidence 78999999999999999999999999999999999999986 8899999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h 169 (330)
|+++ |||+|+++++.|++||++||++||| |++|+|||||++++..||..|.+|||++.. .++.++++|
T Consensus 123 L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~h 190 (469)
T PRK13511 123 LHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 190 (469)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHH
Confidence 9986 9999999999999999999999999 999999999999999999999999996431 146899999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCC-CCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhc---
Q 020130 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG--- 245 (330)
Q Consensus 170 n~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~-~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~--- 245 (330)
|+++|||+||+++|++. |+++||++++..+++|.+ ++|+|++||++++++.++||+||+++|+||+.|++.++
T Consensus 191 n~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~ 267 (469)
T PRK13511 191 NMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHIL 267 (469)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhh
Confidence 99999999999999974 679999999999999999 89999999999999999999999999999999998774
Q ss_pred -C--CCCCCCHhHHhhcC---CCccEEEEecccCceeecccCCC-----CCC---------CCcCCCCcc-e-ecccCCc
Q 020130 246 -N--RLPKFTKSQAEMVK---GSVDFLGLNYYTADYAEEVTSFS-----NTN---------FSYTTDSRV-N-RTNGFGL 303 (330)
Q Consensus 246 -~--~lp~~t~~d~~~ik---g~~DFiGiNYYts~~v~~~~~~~-----~~~---------~~~~~~~~~-~-~~~~~g~ 303 (330)
+ ..|+||++|+++|+ +++||||||||+|.+|+..+... ... .+....... . ..+.|||
T Consensus 268 ~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 347 (469)
T PRK13511 268 EANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW 347 (469)
T ss_pred hhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC
Confidence 2 12589999999996 46899999999999998532110 000 000000011 1 1234999
Q ss_pred eeccCCCchhhhHhhHhhhcc--CCCC
Q 020130 304 AFHLPEGNSRTFAVSKEKIQS--SSHL 328 (330)
Q Consensus 304 ~~~~P~G~~~~l~~~~~~y~~--p~~~ 328 (330)
+ ++|+||+.+|++++++|++ |++|
T Consensus 348 ~-i~P~Gl~~~l~~~~~~Y~~~~pi~I 373 (469)
T PRK13511 348 I-IYPQGLYDQLMRIKKDYPNYKKIYI 373 (469)
T ss_pred e-ECcHHHHHHHHHHHHHcCCCCCEEE
Confidence 8 6999999999999999997 6886
No 10
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.1e-83 Score=637.85 Aligned_cols=301 Identities=30% Similarity=0.517 Sum_probs=264.7
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 44 ~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~--~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 121 (467)
T TIGR01233 44 TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGY--GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEA 121 (467)
T ss_pred CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHH
Confidence 67999999999999999999999999999999999999986 8899999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h 169 (330)
|+++ |||+|+++++.|++||++||++||+ |++|+|||||++++..||+.|.+|||.+.. .++.++++|
T Consensus 122 L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~h 189 (467)
T TIGR01233 122 LHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 189 (467)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccch----------hHHHHHHHH
Confidence 9986 9999999999999999999999998 999999999999999999999999996321 146899999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCC-CCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcC--
Q 020130 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN-- 246 (330)
Q Consensus 170 n~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~-~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~-- 246 (330)
|+++|||+||+++|++. |+++|||+++..++||.+ ++|+|++||++++++.++||+||+++|+||+.|++.++.
T Consensus 190 n~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~ 266 (467)
T TIGR01233 190 NMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHIL 266 (467)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhh
Confidence 99999999999999973 679999999999999998 899999999999999999999999999999999998753
Q ss_pred --C--CCCCCHhHHhhc---CCCccEEEEecccCceeecccCC-----CCC---C------CCcCCCCcc-e-ecccCCc
Q 020130 247 --R--LPKFTKSQAEMV---KGSVDFLGLNYYTADYAEEVTSF-----SNT---N------FSYTTDSRV-N-RTNGFGL 303 (330)
Q Consensus 247 --~--lp~~t~~d~~~i---kg~~DFiGiNYYts~~v~~~~~~-----~~~---~------~~~~~~~~~-~-~~~~~g~ 303 (330)
+ +|.||++|+++| ++++||||||||+|.+|+..... +.. . ..+...... . ..+.|||
T Consensus 267 ~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw 346 (467)
T TIGR01233 267 AENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDW 346 (467)
T ss_pred hccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCC
Confidence 2 378999999999 58999999999999999853110 000 0 000000001 1 1245999
Q ss_pred eeccCCCchhhhHhhHhhhcc--CCCC
Q 020130 304 AFHLPEGNSRTFAVSKEKIQS--SSHL 328 (330)
Q Consensus 304 ~~~~P~G~~~~l~~~~~~y~~--p~~~ 328 (330)
+ ++|+||+.+|++++++|++ |++|
T Consensus 347 ~-i~P~Gl~~~L~~~~~~Y~~~ppi~I 372 (467)
T TIGR01233 347 I-IYPEGLYDQIMRVKNDYPNYKKIYI 372 (467)
T ss_pred e-eChHHHHHHHHHHHHHcCCCCCEEE
Confidence 9 6999999999999999997 5887
No 11
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.1e-82 Score=632.34 Aligned_cols=302 Identities=29% Similarity=0.459 Sum_probs=265.7
Q ss_pred CCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
++++||||||||+|||+||++||+++|||||+||||+|++. .+.+|++||+||+++|++|+++||+|||||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHH
Q 020130 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (330)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (330)
|+++||||+|+++++.|++||++||++|||+|++|+||||||+++..||. .|. +|||... .++.+++
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99999999999999999999999999999999999999999999999996 664 5887432 2468999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcCC
Q 020130 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (330)
Q Consensus 168 ~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~~ 247 (330)
+||+++|||+||+++|++. ++++||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|++.++++
T Consensus 210 ~hn~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 210 AHHELVASALATKIAHEVN---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhc
Confidence 9999999999999999875 5689999999999999999999999999877 45899999999999999999999864
Q ss_pred --CCCCCHhHHhhcCCCccEEEEecccCceeecccCCCC-CCCCcCCCCcce--ecccCCceeccCCCchhhhHhhHhhh
Q 020130 248 --LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSN-TNFSYTTDSRVN--RTNGFGLAFHLPEGNSRTFAVSKEKI 322 (330)
Q Consensus 248 --lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~g~~~~~P~G~~~~l~~~~~~y 322 (330)
+|.||++|+++|++++||||||||+|.+|+....... ...........+ .+++|||+ ++|+||+.+|+++++||
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y 364 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWG-IDPLGLRITMNMMYDRY 364 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCe-eChHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999986321111 001100111122 13459999 69999999999999999
Q ss_pred ccCCCC
Q 020130 323 QSSSHL 328 (330)
Q Consensus 323 ~~p~~~ 328 (330)
++|++|
T Consensus 365 ~~Pi~I 370 (474)
T PRK09852 365 QKPLFL 370 (474)
T ss_pred CCCEEE
Confidence 999987
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=8.5e-84 Score=641.25 Aligned_cols=309 Identities=45% Similarity=0.798 Sum_probs=273.3
Q ss_pred CccccCCCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
||++.+++++++||||||||+|||+|||+||+++|||||+|+||+|+|. .|.+|++|+++|+++|++|+++||+|||||
T Consensus 41 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 41 PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 6778889999999999999999999999999999999999999999982 299999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 020130 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (330)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (330)
+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|+|||||++++..||+.|.+|||..+ .
T Consensus 120 ~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~ 187 (455)
T PF00232_consen 120 YHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDS-----------L 187 (455)
T ss_dssp ESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSST-----------H
T ss_pred eecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccc-----------c
Confidence 99999999998 69999999999999999999999999999999999999999999999999999554 3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHH-HHHHHHhhhhcccchhhhhcCCCChhH
Q 020130 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASE-KAAYRAIDFKFGWIFNPITYGSYPRSM 240 (330)
Q Consensus 162 ~~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~-~aa~~~~~~~~~~fldp~~~G~YP~~~ 240 (330)
++.++++||+++|||+||+++|+++ ++++|||+++..+++|.+++++|. +||++.+++.++||+||+++|+||..|
T Consensus 188 ~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~ 264 (455)
T PF00232_consen 188 KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEM 264 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHH
T ss_pred chhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHH
Confidence 6889999999999999999999986 679999999999999999998776 899999999999999999999999999
Q ss_pred HHhhcCC--CCCCCHhHHhhcCCCccEEEEecccCceeecccCCCCCCCCcCCC--Ccc----e-ecccCCceeccCCCc
Q 020130 241 QHLVGNR--LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTD--SRV----N-RTNGFGLAFHLPEGN 311 (330)
Q Consensus 241 ~~~~~~~--lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~~--~~~----~-~~~~~g~~~~~P~G~ 311 (330)
+..++++ +|.||++|+++|++++||||||||++.+|+..+...... ....+ ... . ..+++||++ +|+|+
T Consensus 265 ~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~gw~i-~P~Gl 342 (455)
T PF00232_consen 265 KEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPP-SYDSDAPFGQPYNPGGPTTDWGWEI-YPEGL 342 (455)
T ss_dssp HHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSST-THEEEESEEEECETSSEBCTTSTBB-ETHHH
T ss_pred hhccccccccccccchhhhcccccchhhhhccccceeeccCccccccc-cccCCccccccccccccccccCccc-ccchH
Confidence 9999987 999999999999999999999999999999876322111 11111 111 1 235699995 79999
Q ss_pred hhhhHhhHhhhc-cCCCC
Q 020130 312 SRTFAVSKEKIQ-SSSHL 328 (330)
Q Consensus 312 ~~~l~~~~~~y~-~p~~~ 328 (330)
+.+|++++++|+ .|++|
T Consensus 343 ~~~L~~l~~~Y~~~pI~I 360 (455)
T PF00232_consen 343 RDVLRYLKDRYGNPPIYI 360 (455)
T ss_dssp HHHHHHHHHHHTSSEEEE
T ss_pred hhhhhhhccccCCCcEEE
Confidence 999999999999 88876
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.1e-80 Score=613.21 Aligned_cols=305 Identities=38% Similarity=0.661 Sum_probs=273.3
Q ss_pred CccccCCCCCcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
||++.++.++++||||||+|+|||++||+||+++|||||+||||+|+|. |.+|++++++|+++|++|+++||+|+|||
T Consensus 37 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~--~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 37 PGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT--GPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred CCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC--CCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 4555566789999999999999999999999999999999999999975 88999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 020130 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (330)
Q Consensus 82 ~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (330)
+|||+|+||+++ |||+++++++.|++||+.|+++|||+|++|+|||||++++..||..|.+||+.++.
T Consensus 115 ~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~----------- 182 (427)
T TIGR03356 115 YHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDL----------- 182 (427)
T ss_pred ccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccH-----------
Confidence 999999999988 99999999999999999999999999999999999999999999999999985431
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHH
Q 020130 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (330)
Q Consensus 162 ~~~~~~~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~ 241 (330)
++.++++||+++|||+||+++|++. |+++||++++..++||.+++|+|+.||++++++.++||+||+++|+||+.|+
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 259 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLL 259 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHH
Confidence 3579999999999999999999975 5799999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHhHHhhcCCCccEEEEecccCceeecccCCCCCCCCcCCCCcceecccCCceeccCCCchhhhHhhHhh
Q 020130 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTNGFGLAFHLPEGNSRTFAVSKEK 321 (330)
Q Consensus 242 ~~~~~~lp~~t~~d~~~ikg~~DFiGiNYYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~G~~~~l~~~~~~ 321 (330)
+.++. +|.||++|+++|++++||||||||+|.+|+........ ........+ .+.+||+ ++|+||+.+|+++++|
T Consensus 260 ~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~--~~~~~~~~~-~~~~gw~-i~P~Gl~~~L~~~~~r 334 (427)
T TIGR03356 260 EYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAG--FVEVPEGVP-KTAMGWE-VYPEGLYDLLLRLKED 334 (427)
T ss_pred HHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCC--ccccCCCCC-cCCCCCe-echHHHHHHHHHHHHh
Confidence 99974 69999999999999999999999999999864321110 000011112 2348998 6999999999999999
Q ss_pred hcc-CCCC
Q 020130 322 IQS-SSHL 328 (330)
Q Consensus 322 y~~-p~~~ 328 (330)
|++ |++|
T Consensus 335 Y~~ppi~I 342 (427)
T TIGR03356 335 YPGPPIYI 342 (427)
T ss_pred cCCCCEEE
Confidence 998 6887
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.37 E-value=1.5e-12 Score=126.96 Aligned_cols=109 Identities=25% Similarity=0.443 Sum_probs=87.5
Q ss_pred cccHHHHHHHHHcCCCEEEe-ccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhc---
Q 020130 19 FRYKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY--- 94 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--- 94 (330)
+.+++|+++|+++|+|++|+ .++|+++||++ |.+|. +++|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 56899999999999999996 67999999998 99997 5688999999999999999999999999998754
Q ss_pred ------------CC-----CCChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCccc
Q 020130 95 ------------GG-----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPETV 133 (330)
Q Consensus 95 ------------gg-----w~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~~ 133 (330)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124566778888899999999985 8899999999754
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.35 E-value=3.9e-12 Score=117.77 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=90.8
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccc-ccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
..++|++.|+++|+|++|+.|.|..++ |.+. +.++...++.++++|+.|.++||.++|+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~--~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG--YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT--TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC--ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 678999999999999999999998888 5553 56999999999999999999999999999874 7774432 3333
Q ss_pred -ChhhHHHHHHHHHHHHHHhCC--CcceEEeccCCccc
Q 020130 99 -SPKIVKDFGDYADLCFKEFGD--RVKHWITLNEPETV 133 (330)
Q Consensus 99 -~~~~~~~f~~ya~~~~~~~g~--~v~~w~t~NEp~~~ 133 (330)
.....+.|.++++.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 344678899999999999954 58899999999864
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.75 E-value=3.2e-08 Score=91.67 Aligned_cols=83 Identities=17% Similarity=0.350 Sum_probs=70.6
Q ss_pred cccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeE--EEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHh
Q 020130 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP--FVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (330)
Q Consensus 40 i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (330)
+.|++++|++ |.+|.+. .+.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHh
Confidence 3699999987 9999854 678999999999995 4456677889998742 2 4567889999999999999
Q ss_pred CCCcceEEeccCCcc
Q 020130 118 GDRVKHWITLNEPET 132 (330)
Q Consensus 118 g~~v~~w~t~NEp~~ 132 (330)
+++|..|.++|||..
T Consensus 71 ~g~i~~wdV~NE~~~ 85 (254)
T smart00633 71 KGKIYAWDVVNEALH 85 (254)
T ss_pred CCcceEEEEeeeccc
Confidence 999999999999985
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.3e-07 Score=97.62 Aligned_cols=117 Identities=20% Similarity=0.386 Sum_probs=90.8
Q ss_pred cHHHHHHHHHcCCCEEEec-cccccccccCCCCCCCChHHHHHHHHH-HHHHHHCCCeEEEEc-CCCCCchhhhhhc---
Q 020130 21 YKEDIALVKQVGFDSIRFS-ISWSRILPHGNISGGVNQQGVDFYNNL-INELISNGLTPFVTL-FHWDTPQALEDEY--- 94 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~--- 94 (330)
|++|++.||++|+|++|.+ ++|++++|+. |.+|.. +.|.. ++.+.+.||.+++.. .....|.|+..+|
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 6778999999999999994 6999999998 999986 67777 999999999999988 7788999998775
Q ss_pred ------------CCCCChhhHH-HHHHHHHH----HHHH-hCC--CcceEEeccCCcc-ccccccccCcc
Q 020130 95 ------------GGFLSPKIVK-DFGDYADL----CFKE-FGD--RVKHWITLNEPET-VGECGYAKGTK 143 (330)
Q Consensus 95 ------------ggw~~~~~~~-~f~~ya~~----~~~~-~g~--~v~~w~t~NEp~~-~~~~gy~~g~~ 143 (330)
++|.+-+.+. .|.+|++. +.+| ||+ -|-.|.+-||=.. .+...|+...|
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 4554333222 36666666 7888 887 4899999998666 44444444333
No 18
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.46 E-value=3.6e-06 Score=80.76 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC---CchhhhhhcCCCC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALEDEYGGFL 98 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~~ggw~ 98 (330)
++=+++||+.|+|++|+-+ | +-|... |..| ++.-..+..+++++||+++|++|-=| =|.--.. -..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~--g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~-P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDG--GYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNK-PAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTT--TTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCccc--ccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCC-CccCC
Confidence 4458999999999999976 3 233321 5555 46788999999999999999986312 1221111 14687
Q ss_pred C---hhhHHHHHHHHHHHHHHhCC---CcceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 020130 99 S---PKIVKDFGDYADLCFKEFGD---RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLI 172 (330)
Q Consensus 99 ~---~~~~~~f~~ya~~~~~~~g~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l 172 (330)
+ .+..+.-.+|.+.+.+.+++ .++++++=||.+.-.+ +|-|.. .-+.-.-.++
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll 156 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLL 156 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHH
Confidence 7 45667777888887766654 6899999999875332 333432 1244445666
Q ss_pred HHHHHHHHHHHHhccCCCcccEEEEec
Q 020130 173 LSHATAVKLYRQNYQASQNGLIGITVS 199 (330)
Q Consensus 173 lAHa~av~~~r~~~~~~~~gkIGi~~~ 199 (330)
.|-.+|||. .. ++.||.+.+.
T Consensus 157 ~ag~~AVr~---~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 157 NAGIKAVRE---VD---PNIKVMLHLA 177 (332)
T ss_dssp HHHHHHHHT---HS---STSEEEEEES
T ss_pred HHHHHHHHh---cC---CCCcEEEEEC
Confidence 666666654 43 4567766554
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=3.7e-06 Score=83.20 Aligned_cols=119 Identities=16% Similarity=0.227 Sum_probs=85.2
Q ss_pred cCcccccc-----HHHHHHHHHcCCCEEEeccccccccccCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 14 ADNFYFRY-----KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 14 a~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
..-....| ++|+..||+.|+|++|+.|.|-.+.+....+..+. ...+.+.+++|+.+++.||.+++.||+..-.
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 33445566 89999999999999999998666655320012232 4455699999999999999999999986522
Q ss_pred hhhhhh--c-CCCC-ChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCcc
Q 020130 88 QALEDE--Y-GGFL-SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (330)
Q Consensus 88 ~~l~~~--~-ggw~-~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~ 132 (330)
.-=.+. + +.+. ..+.++++.+-.+.++.+|++. |-...++|||+-
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 211111 0 1122 3557799999999999999983 555789999985
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.05 E-value=2.6e-05 Score=78.86 Aligned_cols=106 Identities=26% Similarity=0.488 Sum_probs=62.0
Q ss_pred cHHHHHHHH-HcCCCEEEec--c--ccccccc-cCCCCCC--CChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh
Q 020130 21 YKEDIALVK-QVGFDSIRFS--I--SWSRILP-HGNISGG--VNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (330)
Q Consensus 21 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (330)
+.+.+..++ ++|++.+||- + +..-... ++. |. +|+ .+.|+++|.|+++||+|+|.|.. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~--~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED--GIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT--EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC--CCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 555566555 9999999986 3 2222222 221 32 686 67889999999999999999986 6777643
Q ss_pred h------cCCCC-ChhhHHHHHHHHHHHHH----HhCC-Ccce--EEeccCCccc
Q 020130 93 E------YGGFL-SPKIVKDFGDYADLCFK----EFGD-RVKH--WITLNEPETV 133 (330)
Q Consensus 93 ~------~ggw~-~~~~~~~f~~ya~~~~~----~~g~-~v~~--w~t~NEp~~~ 133 (330)
. +.|+. .++..+.+.++++.+++ |||. .|.. |.+||||++.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 2 12222 34566777777666554 5553 4664 5899999974
No 21
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.52 E-value=0.00015 Score=69.57 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---C--C---CCchhhh
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H--W---DTPQALE 91 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H--~---~~P~~l~ 91 (330)
.|++-++.||++|+|++-+-|.|.--+|.+ |.+|.+|..=.+++|+.++++|+-+++-.= | | .+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 477789999999999999999999999998 999999988899999999999999887532 1 3 4899998
Q ss_pred hhcCCC---CChhhHHHHHHHHHHHHHHhCC-------CcceEEeccCC
Q 020130 92 DEYGGF---LSPKIVKDFGDYADLCFKEFGD-------RVKHWITLNEP 130 (330)
Q Consensus 92 ~~~ggw---~~~~~~~~f~~ya~~~~~~~g~-------~v~~w~t~NEp 130 (330)
.+.+.. .++...+.-.+|.+.+++...+ -|-.-++=||.
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 763332 2344556666666666666544 23345555664
No 22
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.33 E-value=0.00022 Score=69.63 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=75.3
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 85 (330)
+.-.+..++.||++|++.+-+.+=|.-+|.++. +++|+++ |+++++.+++.|++..+.|. | .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p--~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP--QQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST--TB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC--CccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 447889999999999999999999999999975 8999865 99999999999999888763 3 36
Q ss_pred Cchhhhhh-----------cCC--------CCChhhHHHHHHHHHHHHHHhCCCc
Q 020130 86 TPQALEDE-----------YGG--------FLSPKIVKDFGDYADLCFKEFGDRV 121 (330)
Q Consensus 86 ~P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~g~~v 121 (330)
||.|+.+. .|. |....+++.|.+|-+...++|.+..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 89998643 122 4444458999999998888887654
No 23
>PLN02161 beta-amylase
Probab=97.28 E-value=0.0011 Score=66.01 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=83.5
Q ss_pred CccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-CC---------
Q 020130 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-HW--------- 84 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H~--------- 84 (330)
..+....+..++.+|++|++.+-+.+=|--+|.++. +++|+++ |+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP--LEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 466667888999999999999999999999999886 9999965 99999999999999887765 42
Q ss_pred --CCchhhhhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeccCC
Q 020130 85 --DTPQALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEP 130 (330)
Q Consensus 85 --~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp 130 (330)
-||+|+.+. | .| +..+.-++.|.+|-+-..++|.+... -|+.|.
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI 260 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEI 260 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEE
Confidence 489997752 0 12 12233467888888888777776543 245443
No 24
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.26 E-value=0.0013 Score=63.04 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=79.6
Q ss_pred cCccccccHH-HHHHHHHcCCCEEEec--cccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE--EcCCCCCch
Q 020130 14 ADNFYFRYKE-DIALVKQVGFDSIRFS--ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV--TLFHWDTPQ 88 (330)
Q Consensus 14 a~d~y~~~~e-Di~l~~~lG~~~~R~s--i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~ 88 (330)
|.+..+...+ ....+-.--+|.+-.. +-|..++|.. |.+|.+ -.+++++-++++||++-- -+.|--.|.
T Consensus 15 av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~ 88 (320)
T PF00331_consen 15 AVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPD 88 (320)
T ss_dssp EEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-H
T ss_pred EechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCC---CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccc
Confidence 3444433333 3555666677777775 8999999997 999985 477999999999999874 334557899
Q ss_pred hhhhhcCCCCChh---hHHHHHHHHHHHHHHhC--CCcceEEeccCCccc
Q 020130 89 ALEDEYGGFLSPK---IVKDFGDYADLCFKEFG--DRVKHWITLNEPETV 133 (330)
Q Consensus 89 ~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~g--~~v~~w~t~NEp~~~ 133 (330)
|+... .-+...+ ......+|.+.+++||+ .+|..|-+.|||...
T Consensus 89 w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 89 WVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDD 137 (320)
T ss_dssp HHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-T
T ss_pred eeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccC
Confidence 99863 1233233 67788999999999999 489999999999643
No 25
>PLN02803 beta-amylase
Probab=97.18 E-value=0.0013 Score=65.84 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=79.3
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CCC
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDT 86 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 86 (330)
.-.+..++.+|++|++.+-+.+=|--+|.++. +++|++| |+++++.+++.|++..+.|. | --+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGP--MKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 34677899999999999999999999999876 9999965 99999999999999887765 3 258
Q ss_pred chhhhhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeccC
Q 020130 87 PQALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNE 129 (330)
Q Consensus 87 P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NE 129 (330)
|+|+.+. | .| +..+.-++.|.+|-+-..++|.+... -||.|
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~e 249 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAE 249 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEE
Confidence 9997753 0 12 12233457788888877777766543 34444
No 26
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.17 E-value=0.0011 Score=64.60 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=56.2
Q ss_pred HHcCCCEEEecc---cc------------ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhh
Q 020130 29 KQVGFDSIRFSI---SW------------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (330)
Q Consensus 29 ~~lG~~~~R~si---~W------------~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 93 (330)
+.+|++.+||.| ++ .|.+--...+|.+|+.+=+-=+.++++++++|++-++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 359999999987 33 3332111123778875555566789999999999887 4556878777643
Q ss_pred c---CC-----CCChhhHHHHHHHHHHHHHHhCC---CcceEEeccCCcc
Q 020130 94 Y---GG-----FLSPKIVKDFGDYADLCFKEFGD---RVKHWITLNEPET 132 (330)
Q Consensus 94 ~---gg-----w~~~~~~~~f~~ya~~~~~~~g~---~v~~w~t~NEp~~ 132 (330)
- |+ =+.++..+.|++|-..|+++|.. .+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 1 11 14567799999999999999833 6899999999983
No 27
>PLN00197 beta-amylase; Provisional
Probab=97.13 E-value=0.0018 Score=65.22 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CCCc
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDTP 87 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 87 (330)
-.+..++.+|++|++.+-+.+=|.-+|.++. +++|++| |+++++.+++.|++..+.|. | --+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p--~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESP--GVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 4778899999999999999999999999886 9999966 99999999999999888765 3 2589
Q ss_pred hhhhhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeccCC
Q 020130 88 QALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEP 130 (330)
Q Consensus 88 ~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp 130 (330)
+|+.+. | .| +..|.-++.|.+|-+-...+|.+..+ -||.|.
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI 270 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEI 270 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEE
Confidence 997753 0 12 11233367888888887777766543 244443
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=96.99 E-value=0.0038 Score=66.26 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC--------CCCCchhhh
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQALE 91 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 91 (330)
.|++=++.||++|+|++-.=+.|.--||.+ |.+|.+|..=..++|+.+.+.||-+++-.- .-.+|.||.
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 477779999999999999999999999997 999999999999999999999999888642 346799997
Q ss_pred hhcCCCC----ChhhHHHHHHHHHHHHHHhC---------CCcceEEeccCC
Q 020130 92 DEYGGFL----SPKIVKDFGDYADLCFKEFG---------DRVKHWITLNEP 130 (330)
Q Consensus 92 ~~~ggw~----~~~~~~~f~~ya~~~~~~~g---------~~v~~w~t~NEp 130 (330)
.. .|.. ++...++-.+|.+.++.... +-|-..++=||=
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 54 4532 45556666666666666653 234555666763
No 29
>PLN02801 beta-amylase
Probab=96.97 E-value=0.0043 Score=62.01 Aligned_cols=99 Identities=21% Similarity=0.347 Sum_probs=77.8
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 85 (330)
-...+..+..+|++|++.+-+.+=|.-+|.++. +++|++| |+++++.+++.|++..+.|. | .-
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP--KQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 334778899999999999999999999999876 9999965 99999999999999877765 3 35
Q ss_pred Cchhhhhh--------c---CC----------------CCChhhHHHHHHHHHHHHHHhCCCc
Q 020130 86 TPQALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRV 121 (330)
Q Consensus 86 ~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~g~~v 121 (330)
+|+|+.+. | .| +..+.-++.|.+|-+-..++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 89997753 0 12 1223346888888888877777654
No 30
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.83 E-value=0.0058 Score=57.70 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=62.3
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCC
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (330)
....++.|+.+||++|+|++|++- .|. ++ ++++.|-+.||-++.-+.....-.|-. .+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-------~~-------~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-------SP-------RFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S---------SH-------HHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-------cH-------HHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 357889999999999999999942 222 22 567788899999997764322111110 010
Q ss_pred ----CCChhhHHHHHHHHHHHHHHhCCC--cceEEeccCC
Q 020130 97 ----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (330)
Q Consensus 97 ----w~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp 130 (330)
-.+++..+.+.+-++.+++++.+. |-.|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 125677888888888899999874 9999999998
No 31
>PLN02905 beta-amylase
Probab=96.81 E-value=0.0064 Score=62.08 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=78.3
Q ss_pred CccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C----------
Q 020130 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H---------- 83 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H---------- 83 (330)
.....-.+..+..+|++|++.+-+.+=|--+|.++. +.+||+| |+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP--~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP--QEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 345666788999999999999999999999999886 9999965 99999999999999887765 3
Q ss_pred -CCCchhhhhh--------c---CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 020130 84 -WDTPQALEDE--------Y---GGF----------------LSPKIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 84 -~~~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~g~~ 120 (330)
--||+|+.+. | .|- ..+.-++.|.+|.+-..++|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2589997753 0 121 12334677887777776666554
No 32
>PLN02705 beta-amylase
Probab=96.76 E-value=0.0073 Score=61.47 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 85 (330)
-.-.+..+..||++|++.+-+.+=|.-+|.++. +.+||+| |+++++.+++.|++..+.|. | --
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P--~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP--QKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC--CcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 345778899999999999999999999999876 9999965 99999999999999877765 3 25
Q ss_pred Cchhhhhh--------c---CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 020130 86 TPQALEDE--------Y---GGF----------------LSPKIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 86 ~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~g~~ 120 (330)
||+|+.+. | .|- ..+.-++.|.+|.+-..++|.+.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89997753 0 121 12334577888887776676653
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.66 E-value=0.015 Score=55.00 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHHHHcCCCEEEecc--ccccc-c----ccCCC---C------CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCch
Q 020130 25 IALVKQVGFDSIRFSI--SWSRI-L----PHGNI---S------GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (330)
Q Consensus 25 i~l~~~lG~~~~R~si--~W~ri-~----P~~~~---~------g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (330)
++..|+-|||.+|+.+ .|... . |.... + ..+|++-+++.+++|+.|.++||++.+.+.| +.|.
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~~ 114 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCPY 114 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHHH
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCcc
Confidence 6788999999999998 44433 1 11100 0 2379999999999999999999999988765 2121
Q ss_pred hhhhhcCCCCC---hhhHHHHHHHHHHHHHHhCCC-cceEEeccCC
Q 020130 89 ALEDEYGGFLS---PKIVKDFGDYADLCFKEFGDR-VKHWITLNEP 130 (330)
Q Consensus 89 ~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~g~~-v~~w~t~NEp 130 (330)
.+ +.|.. .-..+.-.+|.+.|++||+.. =-.|++-||-
T Consensus 115 ---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 115 ---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp ---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred ---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 11 44532 223667788999999999998 4789998885
No 34
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.27 Score=46.43 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCEEEecccccccccc-CC-CCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---CCCCchhhhhhcCC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPH-GN-ISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTPQALEDEYGG 96 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~-~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~gg 96 (330)
++-++.+|+.|+|.+|+-| |-.=..+ |. ..|.-|. ++---.+-.++++.||++++++| ||.=|.- +.+-..
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD--~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPka 141 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNND--LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKA 141 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcch--HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHH
Confidence 3447999999999999965 2111111 10 0122232 34455677788999999999976 3444432 122234
Q ss_pred CCCh------hhHHHHHHHHHHHHHHhCCCcceEEeccCCc
Q 020130 97 FLSP------KIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (330)
Q Consensus 97 w~~~------~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (330)
|.+- ..+-.|.+++-.-+++-|-..++-++=||-+
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccC
Confidence 6542 2334455555555555566678888999976
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.45 E-value=0.013 Score=60.95 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=66.1
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh------
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED------ 92 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~------ 92 (330)
..+..|+++||++|+|++|+|- .|. ++ .+.+.|-+.||-++.-+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-------~~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-------SE-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-------CH-------HHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 4478899999999999999952 232 22 6788899999988876543322222210
Q ss_pred -hcCCCC----ChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCc
Q 020130 93 -EYGGFL----SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (330)
Q Consensus 93 -~~ggw~----~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (330)
....|. +++..+.+.+-++.+++++++. |-.|.+.||+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001232 3466778888899999999985 88999999973
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.32 E-value=0.036 Score=48.18 Aligned_cols=103 Identities=19% Similarity=0.398 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHcCCCEEEecccccccc-----ccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhc
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (330)
+|+++++.|+++|++++=+. |+... |..-..+.+.....+....+++++.+.||++++.|+. -|.|.++
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 69999999999999998543 44432 2210001233344578999999999999999999985 3455542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhCCC--cceEEeccCCc
Q 020130 95 GGFLSPK-IVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (330)
Q Consensus 95 ggw~~~~-~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (330)
.+.+ .++.=..-++.+.++||.. +..|-+-.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2333344667788889874 67777666764
No 37
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.014 Score=55.34 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=67.2
Q ss_pred cccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-E-cCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHh
Q 020130 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-T-LFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (330)
Q Consensus 40 i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-L~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (330)
+-|.-|+|+. |.+|+++ =|.+.+-++++|+..-- | +.|--.|.|+.. .-+..++..+...++-..|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4677777865 8999866 56889999999997542 1 124456889853 23677889999999999999999
Q ss_pred CCCcceEEeccCCcc
Q 020130 118 GDRVKHWITLNEPET 132 (330)
Q Consensus 118 g~~v~~w~t~NEp~~ 132 (330)
.++|.-|=+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999864
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.05 E-value=0.11 Score=57.50 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=64.4
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCC
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (330)
....+++||++||++|+|++|+| -.|.. + .+.+.|-+.||-++--..-.....+.... .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------p-------~fydlcDe~GilV~dE~~~e~hg~~~~~~--~ 427 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------P-------LWYELCDRYGLYVVDEANIETHGMVPMNR--L 427 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHcCCEEEEecCccccCCccccC--C
Confidence 45678999999999999999995 23322 1 45678889999888764211111000000 0
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCc
Q 020130 97 FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (330)
..+++..+.+.+=++.+++|.+++ |-.|.+.||+.
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 124556677777788899999985 89999999975
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.08 E-value=0.24 Score=54.83 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=63.7
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---C-CCCchhhhh
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H-WDTPQALED 92 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~ 92 (330)
....+++|+++||++|+|++|+| ..|.. + .+.+.|-+.||-++--.. | |.....
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~--- 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-------P-------RFYELCDIYGLFVMAETDVESHGFANVGD--- 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHCCCEEEECCcccccCcccccc---
Confidence 35678999999999999999996 24433 1 567889999998887541 1 211100
Q ss_pred hcCCC--CChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCc
Q 020130 93 EYGGF--LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (330)
Q Consensus 93 ~~ggw--~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (330)
+ .+ .++...+.|.+=++.+++|.++. |-.|.+-||..
T Consensus 411 -~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 411 -I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred -c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0 01 23445566777788899999985 88999999973
No 40
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=0.28 Score=50.67 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--------CCCCCchhhh
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--------FHWDTPQALE 91 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~ 91 (330)
.|++=++.+|++|+|++-.=+-|.--+|.+ |++|.+|.-=..++|..+.+.|+=+++-+ .+-.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 366779999999999999999999999998 89999987777788999999998776643 2456798887
Q ss_pred hhcCCC----CChhhHHHHHHHHHHHHHH
Q 020130 92 DEYGGF----LSPKIVKDFGDYADLCFKE 116 (330)
Q Consensus 92 ~~~ggw----~~~~~~~~f~~ya~~~~~~ 116 (330)
.. .|- .|+.+-.++.+|.+.++..
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~ 154 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPM 154 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHH
Confidence 65 552 3667788888888888773
No 41
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.85 E-value=0.061 Score=53.61 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCEEEecccc-ccccccCCCCCCCChHH-HHHHHHHHHHHHHCCCeEEEEcC----CCCCchhhhhhcC
Q 020130 22 KEDIALVKQVGFDSIRFSISW-SRILPHGNISGGVNQQG-VDFYNNLINELISNGLTPFVTLF----HWDTPQALEDEYG 95 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W-~ri~P~~~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~g 95 (330)
+.|+..++.+|++..|++|-= ..+--.. |..|.+. +.+.+.+++.+...+|++++||. |+.--.|-..=.|
T Consensus 29 ~~dle~a~~vg~k~lR~fiLDgEdc~d~~---G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 29 KADLEPAGFVGVKDLRLFILDGEDCRDKE---GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hcccccccCccceeEEEEEecCcchhhhh---ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 358899999999999999532 2222222 7777766 89999999999999999999976 3222222110001
Q ss_pred C------CCChhhHHHHHHHHHHHHHHhCCC--cceEEeccCCcc
Q 020130 96 G------FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (330)
Q Consensus 96 g------w~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~ 132 (330)
| ...+.+...|.+|++.+++.|+-. +..|..-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 234567788999999999998875 688999999766
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.67 E-value=0.19 Score=49.27 Aligned_cols=101 Identities=15% Similarity=0.305 Sum_probs=72.2
Q ss_pred HHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC-C-hhhHHH
Q 020130 28 VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL-S-PKIVKD 105 (330)
Q Consensus 28 ~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~-~-~~~~~~ 105 (330)
-+|+|++-+|.---|.-++-+ --+++ .++++++|.+.+.|+.-+.+-.||+.+.--..+|.+=. . ....+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~----~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK----LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeecc----ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 368899988888778733222 23554 68999999999999554556667777765554443322 2 247889
Q ss_pred HHHHHHHHHHHhCCC-cceE--EeccCCccccc
Q 020130 106 FGDYADLCFKEFGDR-VKHW--ITLNEPETVGE 135 (330)
Q Consensus 106 f~~ya~~~~~~~g~~-v~~w--~t~NEp~~~~~ 135 (330)
++.|++.|+.++|-+ |.-| ..+||||..+-
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 999999999999964 6666 79999998743
No 43
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=92.26 E-value=0.73 Score=43.89 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
+..+.|+.+||+||+|++|+= -|-|.. | .+.-...|.++||=++++|.-. ...+... .-|.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~~p--~~sI~r~-~P~~ 113 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK------N------HDECMSAFADAGIYVILDLNTP--NGSINRS-DPAP 113 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-BT--TBS--TT-S---
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC------C------HHHHHHHHHhCCCEEEEecCCC--CccccCC-CCcC
Confidence 368899999999999999973 344433 2 6788899999999999999642 2223221 1111
Q ss_pred ChhhHHHHHHHHHHHHHHhCC--CcceEEeccCC
Q 020130 99 SPKIVKDFGDYADLCFKEFGD--RVKHWITLNEP 130 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g~--~v~~w~t~NEp 130 (330)
. =..+.|.+|.++ ++.|.. -|-.+..=||-
T Consensus 114 s-w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 114 S-WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ----HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred C-CCHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 0 124566777665 444443 45556666663
No 44
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.98 E-value=0.77 Score=49.42 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=64.0
Q ss_pred CccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhc
Q 020130 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (330)
+-.+..+..|+++||++|+|++|.| =.|.. + .+.+.|-+.||=++=-..... .
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------~-------~~ydLcDelGllV~~Ea~~~~--------~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------E-------EFYDLCDELGLLVIDEAMIET--------H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------H-------HHHHHHHHhCcEEEEecchhh--------c
Confidence 3345569999999999999999998 34443 1 566778888999886654311 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCC--CcceEEeccCCc
Q 020130 95 GGFLSPKIVKDFGDYADLCFKEFGD--RVKHWITLNEPE 131 (330)
Q Consensus 95 ggw~~~~~~~~f~~ya~~~~~~~g~--~v~~w~t~NEp~ 131 (330)
++...++..+...+=++.+++|-++ .|-.|..-||..
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 2233444555556667888888887 489999999965
No 45
>smart00642 Aamy Alpha-amylase domain.
Probab=88.99 E-value=1.5 Score=37.87 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccccccHHHHHHHHHcCCCEEEeccccccccc--c--CCC-C--CCCCh--HHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILP--H--GNI-S--GGVNQ--QGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P--~--~~~-~--g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..+....+-++.+++||++++-++=-+..... . +.. . -.+++ ...+=++++|++|+++||++++.+
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34666777888999999999998765544421 1 100 0 01221 234568999999999999999876
No 46
>PLN02361 alpha-amylase
Probab=81.51 E-value=3.5 Score=40.91 Aligned_cols=66 Identities=12% Similarity=0.270 Sum_probs=47.2
Q ss_pred ccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCC-----CCh--HHHHHHHHHHHHHHHCCCeEEEE--cCC
Q 020130 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGG-----VNQ--QGVDFYNNLINELISNGLTPFVT--LFH 83 (330)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~-----~n~--~~~~~y~~~i~~l~~~gi~p~vt--L~H 83 (330)
.+|....+-++-+++||++++=++=.....-+.|. .. +|. -..+=++++|++|.++||++++. ++|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY--~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGY--LPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCC--CcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 36788889999999999999988765544333332 11 111 12345899999999999999986 456
No 47
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=5.9 Score=39.98 Aligned_cols=114 Identities=18% Similarity=0.332 Sum_probs=73.5
Q ss_pred ccccHHHHHHHHHcCCCEEEec----cccccccccCCC--------------------------CCCCChH----HHHHH
Q 020130 18 YFRYKEDIALVKQVGFDSIRFS----ISWSRILPHGNI--------------------------SGGVNQQ----GVDFY 63 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~~~--------------------------~g~~n~~----~~~~y 63 (330)
|.+|+..|+.|+=.|+|..=.. +-|.+|+-.-.. .|+..++ -+--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7899999999999999976433 356666543210 1333221 12234
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCchhhhhhc--------CCCC------------C---hhhHHHHHHHHHHHHHHhCCC
Q 020130 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGFL------------S---PKIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 64 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw~------------~---~~~~~~f~~ya~~~~~~~g~~ 120 (330)
+++|+.+++-||+|++--+---.|..|..-+ +.|. + +-+.+-=..|-+...++||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999887666788876543 2232 1 223444455667778999973
Q ss_pred cceE--EeccCCc
Q 020130 121 VKHW--ITLNEPE 131 (330)
Q Consensus 121 v~~w--~t~NEp~ 131 (330)
-..+ -||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 3333 3899853
No 48
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=78.77 E-value=17 Score=34.68 Aligned_cols=87 Identities=20% Similarity=0.382 Sum_probs=60.2
Q ss_pred ccccHHHHHHHHHcCCCEEEec---cccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFS---ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s---i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (330)
..||.+=.+++++.|+|++-+. ..-..| ..+-++.+.++-+.++..||++.+++. |.-|.-|
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L----------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL----------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG----------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc----------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 4577778899999999998754 122222 223366788999999999999999986 6667654
Q ss_pred CC-----CCChhhHHHHHHHHHHHHHHhCC
Q 020130 95 GG-----FLSPKIVKDFGDYADLCFKEFGD 119 (330)
Q Consensus 95 gg-----w~~~~~~~~f~~ya~~~~~~~g~ 119 (330)
|| -++++++..+.+=++.+.++.-|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 55 35788999999999999988755
No 49
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=78.13 E-value=11 Score=35.79 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHcCCCEEEeccc--cccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCC----
Q 020130 26 ALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS---- 99 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~---- 99 (330)
+.+++.|++++-+++- -....|.-. |.............|..|+++|++++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~--g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~ 83 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG--GSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLA 83 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC--CCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccc
Confidence 5788899999887753 222222210 11110112345678999999999999997 55543
Q ss_pred --hhhHHHHHHHHHHHHHHhC
Q 020130 100 --PKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 100 --~~~~~~f~~ya~~~~~~~g 118 (330)
...++.|++....+.++||
T Consensus 84 ~~~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 84 TSCTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred cCcccHHHHHHHHHHHHHHhC
Confidence 3567888888888888887
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=77.94 E-value=13 Score=35.52 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHcCCCEEEecccc-------ccccccCC-CCCC-CChHHHHHHHHHHHHHHHCCCeEEEEc----CC--
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISW-------SRILPHGN-ISGG-VNQQGVDFYNNLINELISNGLTPFVTL----FH-- 83 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~-~~g~-~n~~~~~~y~~~i~~l~~~gi~p~vtL----~H-- 83 (330)
...++-++.|+++|+|++=+.+.+ |.++|... ..|. ....|.+.+..+|++++++||++..-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 446777899999999987766543 34444221 0011 111256678999999999999987544 11
Q ss_pred -----CCCchhhhhh-------c----CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 020130 84 -----WDTPQALEDE-------Y----GG--FL---SPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 84 -----~~~P~~l~~~-------~----gg--w~---~~~~~~~f~~ya~~~~~~~g 118 (330)
-..|.|+... + ++ |+ +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236664411 1 22 44 46788888999999999996
No 51
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=77.80 E-value=14 Score=34.10 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCC--------------CCchh--hh--------------hhcCC----CCChh-----
Q 020130 61 DFYNNLINELISNGLTPFVTLFHW--------------DTPQA--LE--------------DEYGG----FLSPK----- 101 (330)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~--------------~~P~~--l~--------------~~~gg----w~~~~----- 101 (330)
+.++.+|+.-+++|.++|+||-=- ..|.| =. .+.+| ..+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 578999999999999999997521 11211 00 00011 11333
Q ss_pred -hHHHHHHHHHHHHHHhCCC-----cceEEeccCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 020130 102 -IVKDFGDYADLCFKEFGDR-----VKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSH 175 (330)
Q Consensus 102 -~~~~f~~ya~~~~~~~g~~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAH 175 (330)
.++. ++..+..+||.. |++|.+=|||.+... .|+-=+.. ...+.-+....++.
T Consensus 104 ~y~~e---wV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~dVHP~------------~~t~~El~~r~i~~ 162 (239)
T PF12891_consen 104 VYMDE---WVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRDVHPE------------PVTYDELRDRSIEY 162 (239)
T ss_dssp EEHHH---HHHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTTT--S---------------HHHHHHHHHHH
T ss_pred hHHHH---HHHHHHHHHhccccCCCceEEEecCchHhhcc------cccccCCC------------CCCHHHHHHHHHHH
Confidence 3444 466677777765 999999999987542 22211101 12344556677778
Q ss_pred HHHHHHHHHhccCCCcc-cEEEEecCCccc
Q 020130 176 ATAVKLYRQNYQASQNG-LIGITVSSIWAV 204 (330)
Q Consensus 176 a~av~~~r~~~~~~~~g-kIGi~~~~~~~~ 204 (330)
|+|+|. .. |.+ .+|.+...-+.|
T Consensus 163 AkaiK~---~D---P~a~v~GP~~wgw~~y 186 (239)
T PF12891_consen 163 AKAIKA---AD---PDAKVFGPVEWGWCGY 186 (239)
T ss_dssp HHHHHH---H----TTSEEEEEEE-SHHHH
T ss_pred HHHHHh---hC---CCCeEeechhhcccee
Confidence 888764 43 344 457775544444
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=77.76 E-value=11 Score=39.47 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=58.8
Q ss_pred ccccHHH-HHHHHHcCCCEEEeccc--------cc-------cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-
Q 020130 18 YFRYKED-IALVKQVGFDSIRFSIS--------WS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT- 80 (330)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt- 80 (330)
|.-..+. ++-+|+||++++=+.=- |. .|.|.- |. .+=++++|++|.++||++|++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 3444556 49999999999986532 21 122211 32 344899999999999999998
Q ss_pred -cCCCCCch----hhh--------h---h-cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020130 81 -LFHWDTPQ----ALE--------D---E-YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 81 -L~H~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
+.|+.... ++. + . +.+| .++++.+.+.+-++.-+++||
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 45653211 110 0 0 0123 367788888888888888877
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=77.49 E-value=14 Score=39.46 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=56.9
Q ss_pred cHHHH-HHHHHcCCCEEEeccc--------cc-------cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE--cC
Q 020130 21 YKEDI-ALVKQVGFDSIRFSIS--------WS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT--LF 82 (330)
Q Consensus 21 ~~eDi-~l~~~lG~~~~R~si~--------W~-------ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt--L~ 82 (330)
..+.+ +-+|+||++++=+.=- |. .|.|.- |. .+=++++|++|.++||++|++ ..
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34453 7889999999976632 21 122211 32 344889999999999999998 44
Q ss_pred CCCCc-----------hhhh-h----hcCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020130 83 HWDTP-----------QALE-D----EYGGF-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 83 H~~~P-----------~~l~-~----~~ggw-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
|+... .+.. + .+..| .++++.+.+.+-++.-+++||
T Consensus 339 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 339 HFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 65321 1100 0 01123 467788888888888888877
No 54
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=77.25 E-value=5.5 Score=36.58 Aligned_cols=58 Identities=17% Similarity=0.417 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCC-------CCC--hHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISG-------GVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
.+-++-+|+||++++-++=-+. .|... .| .+| .-..+=++++|++|.++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4558899999999999985444 12111 01 111 23456689999999999999999863
No 55
>PLN00196 alpha-amylase; Provisional
Probab=76.62 E-value=4.7 Score=40.33 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=45.5
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCC---CCCCh---HHHHHHHHHHHHHHHCCCeEEEE--cCC
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNIS---GGVNQ---QGVDFYNNLINELISNGLTPFVT--LFH 83 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~---g~~n~---~~~~~y~~~i~~l~~~gi~p~vt--L~H 83 (330)
+|....+.++-+++||++++=++=......+.|... -.+|. -..+=++++|++|.++||++|++ +.|
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 355567889999999999999886554433323200 01221 12345899999999999999997 456
No 56
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=76.62 E-value=7.9 Score=36.41 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 99 (330)
+-+.|++.+++.|++.+++.++=|...-.... +.--++.++-..++++.+++.|+++.+++-+|..|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 44679999999999999999866655443211 333467888999999999999999999998776652
Q ss_pred hhhHHHHHHHHHHHHH
Q 020130 100 PKIVKDFGDYADLCFK 115 (330)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (330)
+...+.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1124566777776543
No 57
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=76.52 E-value=11 Score=34.22 Aligned_cols=79 Identities=20% Similarity=0.443 Sum_probs=52.1
Q ss_pred cccCccccccHHHHHHHHHcCCCEEEe----------------------ccccccccccCCCCCCCChHHHHHHHHHHHH
Q 020130 12 DVADNFYFRYKEDIALVKQVGFDSIRF----------------------SISWSRILPHGNISGGVNQQGVDFYNNLINE 69 (330)
Q Consensus 12 ~~a~d~y~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~ 69 (330)
..+.+---.-+.-+++|++||.+++.| ++ | +||.| .+|. +.+..++..
T Consensus 128 s~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG----GIdl---~Nf~~I~~i 197 (236)
T TIGR03581 128 SQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG----GIDL---DNFEEIVQI 197 (236)
T ss_pred ccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC----CccH---HhHHHHHHH
Confidence 334444556778899999999999885 33 3 57764 4674 678899999
Q ss_pred HHHCCCeEEEEcCC-CCCchhhhhhcCCCCChhhHHH
Q 020130 70 LISNGLTPFVTLFH-WDTPQALEDEYGGFLSPKIVKD 105 (330)
Q Consensus 70 l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~~~~~~ 105 (330)
+++.|++-++- | |. .+-|+-.|-+.++-+..
T Consensus 198 ~ldaGv~kviP--HIYs---siIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 198 ALDAGVEKVIP--HVYS---SIIDKETGNTRVEDVKQ 229 (236)
T ss_pred HHHcCCCeecc--ccce---eccccccCCCCHHHHHH
Confidence 99999987642 2 11 12233356666655443
No 58
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=76.49 E-value=15 Score=37.82 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=55.8
Q ss_pred cHHHHHHHHHcCCCEEEeccc--------c-------ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--CC
Q 020130 21 YKEDIALVKQVGFDSIRFSIS--------W-------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--FH 83 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~--------W-------~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 83 (330)
..+-++-+|+||++++-+.=- | -.+.|.- |. .+=++++|++|.++||++|+++ .|
T Consensus 113 i~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~---G~-----~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 113 AIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY---GG-----PDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred HHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 445689999999999986521 2 1111111 22 3458999999999999999974 46
Q ss_pred CCC---------chhhhhh-cCCC------CCh---hhHHHHHHHHHHHHHHhC
Q 020130 84 WDT---------PQALEDE-YGGF------LSP---KIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 84 ~~~---------P~~l~~~-~ggw------~~~---~~~~~f~~ya~~~~~~~g 118 (330)
... | |+... ..+| .++ .+.+.+.+-++.-+++||
T Consensus 185 ~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 185 FGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 431 2 33211 1234 234 666777777777777776
No 59
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=76.05 E-value=9.6 Score=31.74 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCEEEeccc--ccc-ccccCCCCCC--CChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 24 DIALVKQVGFDSIRFSIS--WSR-ILPHGNISGG--VNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~--W~r-i~P~~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
=++.|+++|+|++-+... +-- -.|... |. ...+ -+.+.++|++|+++||++++=+.
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~--~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKV--GPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCC--CcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 368999999999999332 111 123321 21 2223 47899999999999999998654
No 60
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.84 E-value=10 Score=36.84 Aligned_cols=86 Identities=10% Similarity=0.013 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC-CCCchhhhhhcCCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFL 98 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~ 98 (330)
.-.+|++.+.+.|++.+.+.++=|...-.... +.--++.++.+.++|+.++++|+++.+++.. |..|. .|-.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~ 194 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV 194 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC
Confidence 36899999999999999999877766544321 3335678899999999999999999877753 55442 2322
Q ss_pred ChhhHHHHHHHHHHHHH
Q 020130 99 SPKIVKDFGDYADLCFK 115 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~ 115 (330)
.++.+.++++.+.+
T Consensus 195 ---~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 ---PPSKVAYVAKELYD 208 (347)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 35666677776543
No 61
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.73 E-value=82 Score=30.18 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=32.9
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC
Q 020130 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (330)
Q Consensus 43 ~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 84 (330)
++..|... +..+.+-+..++++.+.++++|-..++=|+|-
T Consensus 61 ~~~~~~~~--~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 61 GRITPGDL--GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred cCCCCCce--eecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 34445432 56788899999999999999999999999994
No 62
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=72.97 E-value=17 Score=35.18 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=49.8
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHH
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVK 104 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~ 104 (330)
|+.|.+.|++-+=.|+ +.|++ -+...++.+.++++.+.+.|+++||+.. |+-|.. -|| +.+.++
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l~ 85 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNLS 85 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHHH
Confidence 6888899987665554 34443 2345789999999999999999999984 887765 566 334455
Q ss_pred HHHHH
Q 020130 105 DFGDY 109 (330)
Q Consensus 105 ~f~~y 109 (330)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55554
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=71.78 E-value=14 Score=34.12 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=47.0
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
-.+|++.+.+.|++.+|+.++.|.+.-.... +.--+++++-..++++.++++|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 3789999999999999999988876432210 22345678889999999999999887665
No 64
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=71.06 E-value=2.4 Score=32.40 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=14.1
Q ss_pred HHHHhCC--CcceEEeccC-Cc
Q 020130 113 CFKEFGD--RVKHWITLNE-PE 131 (330)
Q Consensus 113 ~~~~~g~--~v~~w~t~NE-p~ 131 (330)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677886 7999999999 66
No 65
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.94 E-value=14 Score=33.70 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChh
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 101 (330)
+++++.+++.|++.+|++++-+.+.-.-. -+.=.+..++...+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 89999999999999999998774321110 011123356778899999999999999998543322 12
Q ss_pred hHHHHHHHHHHHHHHhC
Q 020130 102 IVKDFGDYADLCFKEFG 118 (330)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (330)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 3455566666543 344
No 66
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.69 E-value=13 Score=36.28 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=48.0
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
.++|++.+.+.|++.+|++++-|.+.-.... +.-.++.++-..+.|+.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5899999999999999999887776543210 223355778899999999999999988763
No 67
>PLN02784 alpha-amylase
Probab=70.21 E-value=10 Score=41.04 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=47.7
Q ss_pred ccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCC-----Ch--HHHHHHHHHHHHHHHCCCeEEEE--cCC
Q 020130 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGV-----NQ--QGVDFYNNLINELISNGLTPFVT--LFH 83 (330)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~-----n~--~~~~~y~~~i~~l~~~gi~p~vt--L~H 83 (330)
.+|....+.++-+++||++++=++=......+.|. ... |. -..+=++.+|++|.++||+++++ ++|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY--~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGY--MPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCc--CcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 35778889999999999999988765444434332 111 11 12345899999999999999997 456
No 68
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=70.12 E-value=8.8 Score=37.35 Aligned_cols=96 Identities=11% Similarity=0.225 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCC-CCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchhhhhhcCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw 97 (330)
.-+|.++.|+++|++.+-+++ ..+-++-- .-|+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 97 ~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 97 FTEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CCHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 346789999999999544444 44433210 002221 23557789999999999743 5543 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccc
Q 020130 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETV 133 (330)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~ 133 (330)
++.+.|.+-.+.+.+ ++ +.|..+...-+|+..
T Consensus 163 ---qt~e~~~~~l~~~~~-l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 ---QTLEDWKETLEKVVE-LNPEHISCYSLIIEEGTP 195 (374)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEEeccEecCCCH
Confidence 234555555555543 44 556666555577643
No 69
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.03 E-value=7.4 Score=40.10 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=41.8
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccccc-CCC-C--CCCCh--HHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPH-GNI-S--GGVNQ--QGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~-~~~-~--g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
-+.-..+-++-+++||++++=++=-...-.-. +.. . -.+|+ ...+=++.+|++|.++||++|+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34556677899999999999776433221100 100 0 01111 1345689999999999999999743
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=69.28 E-value=18 Score=34.09 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC-CCCchhhhhhcCCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFL 98 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~ 98 (330)
+-.+|++...+.|++.+|+.++=|...-.... +.=-++.++-..++|+.++++|+++.+++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC
Confidence 45899999999999999999866654322210 3334567889999999999999999877764 5545 23333
Q ss_pred ChhhHHHHHHHHHHHHH
Q 020130 99 SPKIVKDFGDYADLCFK 115 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~ 115 (330)
..+.+.++++.+.+
T Consensus 153 ---~~~~~~~~~~~~~~ 166 (287)
T PRK05692 153 ---PPEAVADVAERLFA 166 (287)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 35677777777654
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=69.26 E-value=8.4 Score=38.96 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=43.6
Q ss_pred cccccHHHHHHHHHcCCCEEEecccccccc--------ccCCC-------CCCCChH--HHHHHHHHHHHHHHCCCeEEE
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRIL--------PHGNI-------SGGVNQQ--GVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~--------P~~~~-------~g~~n~~--~~~~y~~~i~~l~~~gi~p~v 79 (330)
.|..-.+-++-+++||++++=++=...-.. |.-.. .|.+|+. ..+=+++||++|.++||++|+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 344456778999999999998875433221 11000 0122221 244589999999999999999
Q ss_pred Ec--CCC
Q 020130 80 TL--FHW 84 (330)
Q Consensus 80 tL--~H~ 84 (330)
.+ .|-
T Consensus 100 D~V~NH~ 106 (479)
T PRK09441 100 DVVLNHK 106 (479)
T ss_pred EECcccc
Confidence 74 463
No 72
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=68.74 E-value=47 Score=32.14 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred CcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhh
Q 020130 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (330)
Q Consensus 11 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 90 (330)
+=+|.=|++ |+-.+.. .+.|++.+|+. | |.+-. -+..+.+++.++++|+..=+..+|-.++.-+
T Consensus 74 PlVADIHFd-~~lAl~a-~~~g~dkiRIN-------P-----GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 74 PLVADIHFD-YRLAALA-MAKGVAKVRIN-------P-----GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred CEEEeeCCC-cHHHHHH-HHhccCeEEEC-------C-----CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 345555665 4544443 45699999863 3 33322 3678999999999999999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHH
Q 020130 91 EDEYGGFLSPKIVKDFGDYADLC 113 (330)
Q Consensus 91 ~~~~ggw~~~~~~~~f~~ya~~~ 113 (330)
.++||+-+....++--.++++.|
T Consensus 138 ~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 138 LEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99987655555666666666653
No 73
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=67.47 E-value=9.3 Score=39.51 Aligned_cols=62 Identities=15% Similarity=0.378 Sum_probs=41.6
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCC-------CCCh--HHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISG-------GVNQ--QGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
+.-..+.++-+++||++++=++=-+.. |... .| .+|+ ...+=++++|+++.++||++|+++.
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~-~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVD-NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCC-CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445567899999999999987643321 2110 01 1111 1345689999999999999998753
No 74
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=67.47 E-value=9.9 Score=35.39 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=47.1
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
-.+|++.+.+.|++.+|+.++=|...-.... +.=-++.++...+++..++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3679999999999999998866554333210 222356789999999999999999999874
No 75
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=67.25 E-value=24 Score=34.23 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=44.3
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
++-++++|.+++-+-+-|. |+.. ..+|..-+++..++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~--~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED--DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc--hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 6779999999999999887 5532 34688889999999999999999998864
No 76
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=67.19 E-value=38 Score=35.54 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHHH-HHHHHcCCCEEEec-cccccccc-cCCC-CC--CCC--hHHHHHHHHHHHHHHHCCCeEEEEcC--CCCC-----
Q 020130 22 KEDI-ALVKQVGFDSIRFS-ISWSRILP-HGNI-SG--GVN--QQGVDFYNNLINELISNGLTPFVTLF--HWDT----- 86 (330)
Q Consensus 22 ~eDi-~l~~~lG~~~~R~s-i~W~ri~P-~~~~-~g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~----- 86 (330)
.+-+ +-+++||++++=+. |..+.-.- -|.. .+ .++ -...+=++++|++|.++||++|+.+- |...
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 238 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGL 238 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchh
Confidence 4454 88999999999884 43321100 0100 00 011 01133488999999999999999754 5421
Q ss_pred ------chhhhh-----hcCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020130 87 ------PQALED-----EYGGF-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 87 ------P~~l~~-----~~ggw-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 239 AEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 457788888998898888887
No 77
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=66.73 E-value=22 Score=33.22 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=60.8
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC-CCCchhhhhhcCCCCC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~ 99 (330)
-.+|++.+.+.|++.+++.++=|...-.... +.--++.++...+.++.++++|+++.+++.. |+.|. .|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC-
Confidence 4789999999999999999876654332210 2233677889999999999999999988763 55551 3322
Q ss_pred hhhHHHHHHHHHHHHH
Q 020130 100 PKIVKDFGDYADLCFK 115 (330)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (330)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 36667777777654
No 78
>PRK09505 malS alpha-amylase; Reviewed
Probab=66.69 E-value=11 Score=40.13 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=42.2
Q ss_pred cHHHHHHHHHcCCCEEEecccccccc-----------c----cCCC--C-CCCCh--HHHHHHHHHHHHHHHCCCeEEEE
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRIL-----------P----HGNI--S-GGVNQ--QGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P----~~~~--~-g~~n~--~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
..+=++-+++||++++=++=-...+. | .+.. + -.+|+ ...+=++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44558899999999999875444331 1 0000 0 01222 23456999999999999999997
Q ss_pred c--CCCC
Q 020130 81 L--FHWD 85 (330)
Q Consensus 81 L--~H~~ 85 (330)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 4643
No 79
>PRK12568 glycogen branching enzyme; Provisional
Probab=65.96 E-value=29 Score=37.20 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=57.4
Q ss_pred ccccHHH-HHHHHHcCCCEEEecc--------cccc-----ccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC-
Q 020130 18 YFRYKED-IALVKQVGFDSIRFSI--------SWSR-----ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF- 82 (330)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~si--------~W~r-----i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~- 82 (330)
|.-..+. |+-+|+||++++=+.= +|-= ..|++.. |. .+=++.+|++|.++||.+|+++.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 3334444 6889999999996542 3410 0111110 32 34588999999999999999743
Q ss_pred -CCCC----------chhhh--h-h---cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020130 83 -HWDT----------PQALE--D-E---YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 83 -H~~~----------P~~l~--~-~---~ggw-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
|+.- +.... + + +..| .++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 5421 10010 0 0 1123 456777888888888888887
No 80
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=65.56 E-value=26 Score=32.61 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChh
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 101 (330)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-. + -
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----C
Confidence 4788888888999888876332 255678999999999999999886421 1 1
Q ss_pred hHHHHHHHHHHHHH
Q 020130 102 IVKDFGDYADLCFK 115 (330)
Q Consensus 102 ~~~~f~~ya~~~~~ 115 (330)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 35566677766543
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=65.48 E-value=25 Score=35.66 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=37.7
Q ss_pred cccccHHH-----HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 17 FYFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 17 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
.|..|.+| ++.+++.|++.+|+.++-+.+ +-....|+.+++.|+.+..++.+
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~ 144 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISY 144 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEe
Confidence 36668888 899999999999998866543 22455667777777776666654
No 82
>PRK14706 glycogen branching enzyme; Provisional
Probab=65.29 E-value=31 Score=36.42 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=52.3
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCCC--------h--HHHHHHHHHHHHHHHCCCeEEEEc--CCCC--------
Q 020130 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVN--------Q--QGVDFYNNLINELISNGLTPFVTL--FHWD-------- 85 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n--------~--~~~~~y~~~i~~l~~~gi~p~vtL--~H~~-------- 85 (330)
+-+|+||++++-+.=-= -.|... .-.++ . ...+=++.+|++|.++||++|+.+ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~--e~~~~~-~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVM--EHPFDG-SWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchh--cCCCCC-CCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 67899999998754210 011100 00011 0 113448899999999999999874 3532
Q ss_pred ---Cchh-hhhhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 020130 86 ---TPQA-LEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 86 ---~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0110011 2 256777888888888888887
No 83
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.31 E-value=38 Score=32.60 Aligned_cols=59 Identities=19% Similarity=0.437 Sum_probs=50.5
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
+++.+|++|.+++.|=+-|. |++. -.+|..-.++.+++.++|++.||--++-+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGD--EEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 57889999999999998887 5543 56888889999999999999999999988776644
No 84
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=64.26 E-value=26 Score=36.68 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.9
Q ss_pred cccccHHH-----HHHHHHcCCCEEEeccccccc
Q 020130 17 FYFRYKED-----IALVKQVGFDSIRFSISWSRI 45 (330)
Q Consensus 17 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri 45 (330)
.|.+|.+| ++..++.|++.+|++.+.+.+
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~ 123 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP 123 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH
Confidence 36677766 999999999999999755443
No 85
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=63.47 E-value=16 Score=38.84 Aligned_cols=57 Identities=14% Similarity=0.348 Sum_probs=39.3
Q ss_pred HHHHHHcCCCEEEe----ccccccccccCCC--------------CCCC--Ch---HHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 25 IALVKQVGFDSIRF----SISWSRILPHGNI--------------SGGV--NQ---QGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 25 i~l~~~lG~~~~R~----si~W~ri~P~~~~--------------~g~~--n~---~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
|+-+|+||++++.+ ++.+.+...+... .+.+ ++ ..+.=+++||++|.++||++|++.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 4455444432210 0111 22 246669999999999999999864
No 86
>PRK14705 glycogen branching enzyme; Provisional
Probab=63.36 E-value=42 Score=38.10 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=54.0
Q ss_pred HHHHHHcCCCEEEecc--------ccccccc------cCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc--CCCCCch
Q 020130 25 IALVKQVGFDSIRFSI--------SWSRILP------HGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--FHWDTPQ 88 (330)
Q Consensus 25 i~l~~~lG~~~~R~si--------~W~ri~P------~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~~~P~ 88 (330)
++-+|+||++++=+.= +|- -.| ++.. |. .+=++.+|++|.++||.+|+++ .|+..=.
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~ 844 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS 844 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEeccccCCcch
Confidence 6899999999997642 231 111 1100 32 3348899999999999999974 4652111
Q ss_pred hhhhh----------------cCC-------CCChhhHHHHHHHHHHHHHHhC
Q 020130 89 ALEDE----------------YGG-------FLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 89 ~l~~~----------------~gg-------w~~~~~~~~f~~ya~~~~~~~g 118 (330)
|.... +.. +.++++.+.+.+=+..-+++|+
T Consensus 845 ~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 845 WALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11000 011 2356777778888888888887
No 87
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=63.16 E-value=22 Score=33.11 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=40.2
Q ss_pred cHHHHHHHHHcCCCEEEeccccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 21 YKEDIALVKQVGFDSIRFSISWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
-+|.++.|+++|++.+-++++-+ ++.+.-. +.. .++.+.+.++.++++||.+.+++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~--~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII--STH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc--CCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 48899999999999999999822 1333211 222 34668899999999999866543
No 88
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=63.16 E-value=46 Score=31.08 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (330)
-++|++...+.|++.+|+++..+. ++.-.+.++.++++|+++.+++.--+ + ++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PV 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CC
Confidence 478899999999999999775444 34567889999999999887653101 1 22
Q ss_pred hhHHHHHHHHHHHHH
Q 020130 101 KIVKDFGDYADLCFK 115 (330)
Q Consensus 101 ~~~~~f~~ya~~~~~ 115 (330)
-..+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (275)
T cd07937 146 HTLEYYVKLAKELED 160 (275)
T ss_pred CCHHHHHHHHHHHHH
Confidence 235566666766543
No 89
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.11 E-value=24 Score=34.37 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=57.1
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (330)
-.+|++.+.+.|++.+|+.++-|.+.-.... +.=-++.++-..+.|+.++++|+++.+++- + .+..
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d--~~r~-- 139 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGE---------D--ASRA-- 139 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C--CCCC--
Confidence 3889999999999999999988765333210 222356788899999999999999876642 1 2222
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 020130 101 KIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 101 ~~~~~f~~ya~~~~~~~g 118 (330)
..+.+.++++.+.+ .|
T Consensus 140 -~~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 140 -DPDFLVELAEVAAE-AG 155 (365)
T ss_pred -CHHHHHHHHHHHHH-cC
Confidence 35566667766543 45
No 90
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=62.82 E-value=42 Score=32.29 Aligned_cols=58 Identities=16% Similarity=0.380 Sum_probs=49.5
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
++.+|++|.+++.|=+-|. |+.. ..+|..-.++.+++.++|++.||--++-+..+|.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~--~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP--DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999998887 5553 56898889999999999999999999887766644
No 91
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.07 E-value=12 Score=38.45 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=39.8
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCC--------CCCh--HHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISG--------GVNQ--QGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g--------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..-..+-++-+++||++++=++=-. +.+..+. .+|+ ...+=++++|+++.++||++|+++
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3345566899999999999776322 2211001 1222 124568999999999999999974
No 92
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=62.06 E-value=40 Score=33.30 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..|++||++++++|++++=+.|- .. ...+. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999999886 11 22343 457789999999999988875
No 93
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=61.10 E-value=30 Score=33.92 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
++|++.+.+.|++.+|++++-|.+.-.... +.--++.++-..+.++.+++.|+++.+++
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999987776433211 33346778889999999999999988874
No 94
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=60.92 E-value=36 Score=32.11 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=58.8
Q ss_pred cccccHHH-HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC----chhhh
Q 020130 17 FYFRYKED-IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT----PQALE 91 (330)
Q Consensus 17 ~y~~~~eD-i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~ 91 (330)
||-.|.++ .+.+++.+-+-=-++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 44444444 6777777767677888999998876422322 348999999999999999976541 10011
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHhC
Q 020130 92 DEYGGFLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 92 ~~~ggw~~~~~~~~f~~ya~~~~~~~g 118 (330)
. -..+++..+.|++=+-.+++++|
T Consensus 80 ~---~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 80 A---VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred H---HhcCHHHHHHHHHHHHHHHHHhC
Confidence 0 02345566667666666666665
No 95
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=59.82 E-value=21 Score=38.42 Aligned_cols=87 Identities=13% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCEEEecccccc---------------ccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC--CCCC
Q 020130 24 DIALVKQVGFDSIRFSISWSR---------------ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDT 86 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~r---------------i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~ 86 (330)
-++-+|+||++++-+.=-... +.|.- |. .+=++++|++|.++||.+|+.+- |+.-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 489999999999987632221 11110 22 24488999999999999999865 3211
Q ss_pred -------------chhhhhhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 020130 87 -------------PQALEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 87 -------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
+.++...-.| | .++++...+.+-++.-+++|+
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 245667777777777788775
No 96
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=59.72 E-value=40 Score=32.60 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=61.6
Q ss_pred CccccccHHHHHHHHHcCCCEEEeccccccccccC--CCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh
Q 020130 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (330)
++.+-.-++=++.+++.|++-+-+|++ .+-|.- ...| ..+-.+++-.++.+.+.+.||.++++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G-~~dYdv~kvle~aE~i~~a~idvlIa------Pv~l-- 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAG-RKDYDVKKVLEVAEYIANAGIDVLIA------PVWL-- 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcC-ccccCHHHHHHHHHHHHhCCCCEEEe------eeec--
Confidence 445666678899999999997777773 343432 0113 23334678889999999999999987 8887
Q ss_pred hcCCCCChhhHHHHHHHHHHHH
Q 020130 93 EYGGFLSPKIVKDFGDYADLCF 114 (330)
Q Consensus 93 ~~ggw~~~~~~~~f~~ya~~~~ 114 (330)
.| .|.+-...+..||+.+-
T Consensus 266 --PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 --PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred --CC-cChHHHHHHHHHHHHhC
Confidence 45 46666778888888763
No 97
>PRK10785 maltodextrin glucosidase; Provisional
Probab=59.70 E-value=18 Score=37.87 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCC-------CCCh--HHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPHGNISG-------GVNQ--QGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
+-++-+++||++++=++=- ++.+..-| .+|+ -..+=++++|++|.++||++|+++-
T Consensus 183 ~kLdYL~~LGv~~I~L~Pi----f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPI----FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHcCCCEEEeCCc----ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4479999999999988732 22211000 1121 1234588999999999999999743
No 98
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.06 E-value=23 Score=35.97 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=39.2
Q ss_pred cccccHHH-----HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 17 FYFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 17 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
.|..|.+| ++++++.|++.+|..-.... ++-....|+.+++.|..+.+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd---------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALND---------------PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCC---------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 37778889 89999999999997642221 2335566777777777776666665545
No 99
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.94 E-value=84 Score=29.08 Aligned_cols=92 Identities=24% Similarity=0.393 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHcCCCEEEeccc----------ccc--------------------------ccccCCCCCCCChHHHHH
Q 020130 19 FRYKEDIALVKQVGFDSIRFSIS----------WSR--------------------------ILPHGNISGGVNQQGVDF 62 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~----------W~r--------------------------i~P~~~~~g~~n~~~~~~ 62 (330)
--|+|-+.+.|++||+.+-+||+ |++ -+|-|..+...-+++++-
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~alei 97 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEI 97 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHH
Confidence 34899999999999999998873 653 234332122334678889
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHH---HHHHHHHHhC
Q 020130 63 YNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGD---YADLCFKEFG 118 (330)
Q Consensus 63 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~---ya~~~~~~~g 118 (330)
..+.|..+++-||+.+ -|--+|.= .+ =.++++..+|.+ .|..++++++
T Consensus 98 M~KaI~LA~dLGIRtI-QLAGYDVY--YE-----~~d~eT~~rFi~g~~~a~~lA~~aq 148 (287)
T COG3623 98 MEKAIQLAQDLGIRTI-QLAGYDVY--YE-----EADEETRQRFIEGLKWAVELAARAQ 148 (287)
T ss_pred HHHHHHHHHHhCceeE-eeccceee--ec-----cCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999987 55555542 12 147788888864 4445566654
No 100
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.36 E-value=88 Score=29.56 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCC--CEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC---ch--------
Q 020130 22 KEDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQ-------- 88 (330)
Q Consensus 22 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~-------- 88 (330)
.+-++.+++.|+ +++=+.+.|..-. +. =.+|.+-.---.++|++|+++|+++++.+.=+-. +.
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~--f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GD--FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--Cc--cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 344688888885 5777777886431 21 2345444444679999999999999886653211 11
Q ss_pred -hhhhhcC----------C------CCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCc
Q 020130 89 -ALEDEYG----------G------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (330)
Q Consensus 89 -~l~~~~g----------g------w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (330)
++.++-| | ++|+++.+.|.+..+.+....|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 1111101 1 67899999999888888877653 45678899996
No 101
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=57.00 E-value=56 Score=30.73 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=63.0
Q ss_pred CccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC------Cch
Q 020130 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD------TPQ 88 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~------~P~ 88 (330)
.-.+.++++=|+.++++|+..+=+.--|+.-...... .......-....++++-.+++|+.+++-.+|-+ +=.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~-d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~ 106 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDF-DFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK 106 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccc-cccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence 4457888999999999999999999999973322210 111111113477999999999999999988755 211
Q ss_pred hhhhh---c---C------CC---CChhhHHHHHHHHHHHHHH
Q 020130 89 ALEDE---Y---G------GF---LSPKIVKDFGDYADLCFKE 116 (330)
Q Consensus 89 ~l~~~---~---g------gw---~~~~~~~~f~~ya~~~~~~ 116 (330)
-+++. | | || .+...++.+.+-++.++++
T Consensus 107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 12111 1 1 12 3456788888888887764
No 102
>PRK09936 hypothetical protein; Provisional
Probab=56.95 E-value=87 Score=29.75 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=44.7
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (330)
|++=++.++.+|++++ =+.|++.--+.. |.-+ .+..+.++.+.+.||+++|.|+ +| |.|.+.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~f--g~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADF--GGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCc--ccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 3444789999999986 458998822111 2222 4788999999999999999997 56 565543
No 103
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.85 E-value=27 Score=37.00 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEecc--c---------------c-------ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 25 IALVKQVGFDSIRFSI--S---------------W-------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 25 i~l~~~lG~~~~R~si--~---------------W-------~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
|+-+|+||++++=++= + | -.+.|.- |.-....++=+++||++|.++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 8999999999997642 1 1 1122211 2111123556999999999999999997
Q ss_pred c
Q 020130 81 L 81 (330)
Q Consensus 81 L 81 (330)
+
T Consensus 262 v 262 (658)
T PRK03705 262 V 262 (658)
T ss_pred E
Confidence 4
No 104
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.19 E-value=21 Score=39.00 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHHcCCCEEEecccc---------------ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc-
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISW---------------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL- 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W---------------~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL- 81 (330)
+....+-+.-+++||++++=+|=-. .+|-|.- | +.+=+++++++++++||.+|+++
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3456778899999999999766433 3333332 2 33558999999999999999975
Q ss_pred -CCC
Q 020130 82 -FHW 84 (330)
Q Consensus 82 -~H~ 84 (330)
+|.
T Consensus 91 ~NH~ 94 (879)
T PRK14511 91 PNHM 94 (879)
T ss_pred cccc
Confidence 453
No 105
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=56.12 E-value=44 Score=30.27 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=43.0
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-cCCCCCc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 87 (330)
-+.+++-++++++||.+.+|+...+. |............++..+++.+.+.+.||...+= +++++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35566778999999999998654321 2110001122344567888888899999998874 3445544
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.10 E-value=1.9e+02 Score=27.67 Aligned_cols=152 Identities=16% Similarity=0.040 Sum_probs=82.5
Q ss_pred ccccc---cCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC---chh---------hhhh--c-CCCC-----C
Q 020130 43 SRILP---HGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQA---------LEDE--Y-GGFL-----S 99 (330)
Q Consensus 43 ~ri~P---~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~---------l~~~--~-ggw~-----~ 99 (330)
++..| ... +.++.+-+..++++.+.++++|-..++=|+|-.- +.+ .... . ..+. +
T Consensus 63 ~~~~~~~~~~~--~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt 140 (338)
T cd04733 63 HLEEPGIIGNV--VLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMT 140 (338)
T ss_pred cccCCCcCCCc--ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCC
Confidence 46666 332 6788899999999999999999999999999321 100 0000 0 0011 1
Q ss_pred ----hhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCccC-CCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 020130 100 ----PKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTKA-PGRCSNYIGNCPAGNSATEPYVAAHHLIL 173 (330)
Q Consensus 100 ----~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 173 (330)
.++++.|++=|+. +++.| |-|. +.+-.||+...|- |.... .++.. |.| +-|-..
T Consensus 141 ~~eI~~~i~~~~~aA~r-a~~aGfDgVe---------ih~a~gyLl~qFlsp~~N~--R~D~y-GGs-------lenR~r 200 (338)
T cd04733 141 EEEIEDVIDRFAHAARL-AQEAGFDGVQ---------IHAAHGYLLSQFLSPLTNK--RTDEY-GGS-------LENRAR 200 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHHcCCCEEE---------EchhhhhHHHHhcCCcCCC--CCccC-CCC-------HHHHHH
Confidence 2357777776655 44444 3232 3456688876553 42110 00111 222 224344
Q ss_pred HHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHH-HHHHHH
Q 020130 174 SHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVAS-EKAAYR 218 (330)
Q Consensus 174 AHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D-~~aa~~ 218 (330)
--...++.+|+... ++..|++-++...+.+..-++++ +..++.
T Consensus 201 f~~EiI~aIR~avG--~d~~v~vris~~~~~~~g~~~eea~~ia~~ 244 (338)
T cd04733 201 LLLEIYDAIRAAVG--PGFPVGIKLNSADFQRGGFTEEDALEVVEA 244 (338)
T ss_pred HHHHHHHHHHHHcC--CCCeEEEEEcHHHcCCCCCCHHHHHHHHHH
Confidence 34456667776542 34678988876544443334444 344443
No 107
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=55.81 E-value=5.9 Score=36.70 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhC------CCcceEEeccCCcccccccc
Q 020130 65 NLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG------DRVKHWITLNEPETVGECGY 138 (330)
Q Consensus 65 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g------~~v~~w~t~NEp~~~~~~gy 138 (330)
+..--+.++.+.|+++||||+.= ..-+.+....+.++.+.+=|+.--.++- |+-+.| .+...+||
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~w------svsVSwGY 142 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNW------SVSVSWGY 142 (255)
T ss_pred CcceeeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEE------EEEEEccE
Confidence 33334555678999999999962 2224566666677777774444333322 233444 34567899
Q ss_pred ccCccC
Q 020130 139 AKGTKA 144 (330)
Q Consensus 139 ~~g~~~ 144 (330)
..-.++
T Consensus 143 sVqvy~ 148 (255)
T PF04646_consen 143 SVQVYR 148 (255)
T ss_pred EEEEEC
Confidence 887663
No 108
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=55.56 E-value=46 Score=30.32 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 020130 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 118 (330)
.+...+.|..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4667889999999999999998755433211 012455556666666666677776
No 109
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=55.30 E-value=62 Score=30.85 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCC-EEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC
Q 020130 22 KEDIALVKQVGFD-SIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 22 ~eDi~l~~~lG~~-~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
+|.+++|+++|++ .+=+++ +-+ ++.-..- .-..+ .+-+.+.++.++++||.+.+.+. +.+| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i-nKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSI-NKGST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh-CCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999988 465655 222 2221100 01123 35678999999999999776654 3444 122
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccccCccCC
Q 020130 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAP 145 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~P 145 (330)
..++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23677888777777654 45778877666566654333355566654
No 110
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=54.97 E-value=53 Score=33.13 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
++|++.+++.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5567999999999999998665541 14457888888888877776654445
No 111
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=54.94 E-value=82 Score=29.67 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=65.6
Q ss_pred cHHHHHHHHHcC--CCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---CCchhhhh--h
Q 020130 21 YKEDIALVKQVG--FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALED--E 93 (330)
Q Consensus 21 ~~eDi~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~--~ 93 (330)
..|-++.+++.| ++++=+.+.|.+-.-.+. =.+|++..---+.+|++|+++|+++++.+.-+ +.|..-+. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 456688999999 667778888885321111 23444444446799999999999988876532 22221110 0
Q ss_pred -----------c--------CC---CCChhhHHHHHHHHHHHHHHhCCCcc-eEEeccCCc
Q 020130 94 -----------Y--------GG---FLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPE 131 (330)
Q Consensus 94 -----------~--------gg---w~~~~~~~~f~~ya~~~~~~~g~~v~-~w~t~NEp~ 131 (330)
+ ++ ++|+++.+.|.+..+.+.+ .| |+ +|+=+||+.
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5788888888777765543 43 44 456688873
No 112
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=54.41 E-value=67 Score=30.96 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHH--HHHHHHHHHCCCeEEEEcCCCCCch--------h
Q 020130 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFY--NNLINELISNGLTPFVTLFHWDTPQ--------A 89 (330)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~H~~~P~--------~ 89 (330)
.+-++.+++.|+. ++=+.+.|..-. +. =.+|.+..--- +++|++|+++|+++++.+.-+-.+. .
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~--f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--RD--FTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--cc--eecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 3456777777765 555666665321 11 12333222223 7999999999999998875443321 1
Q ss_pred hh---hh----------c-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCcc
Q 020130 90 LE---DE----------Y-----------GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (330)
Q Consensus 90 l~---~~----------~-----------ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (330)
-+ .. | -.++|++..+.|.+..+.++..+|- .-+|+=+|||..
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 10 00 0 1267888888887777666655443 466789999964
No 113
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=53.82 E-value=48 Score=30.66 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=53.6
Q ss_pred HHHHHHHHHcC----CCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCC
Q 020130 22 KEDIALVKQVG----FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (330)
Q Consensus 22 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw 97 (330)
.+|++.+.+.| ++.+|+.++.|.+.-.... +.--++.++-..+.++.+++.|+++.+++.+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 9999998766655322110 2222356788889999999999987755421 222
Q ss_pred CChhhHHHHHHHHHHHHHHhC
Q 020130 98 LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g 118 (330)
. ..+.+.+.++.+. .+|
T Consensus 140 ~---~~~~~~~~~~~~~-~~G 156 (268)
T cd07940 140 T---DLDFLIEVVEAAI-EAG 156 (268)
T ss_pred C---CHHHHHHHHHHHH-HcC
Confidence 2 3556667776654 344
No 114
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=53.59 E-value=47 Score=33.43 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCEEEecc-cccc-ccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCC
Q 020130 22 KEDIALVKQVGFDSIRFSI-SWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~ 99 (330)
+|.+++|+++|++.+-+++ +-+. +.-.-. ...+ ++.+.+.++.++++||.+.+++. +++| ..+
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~--K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP---------get 351 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIK--KGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP---------GET 351 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc--CCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC---------CCC
Confidence 6778999999999888888 3332 221110 1123 35677999999999999887764 2444 234
Q ss_pred hhhHHHHHHHHHH
Q 020130 100 PKIVKDFGDYADL 112 (330)
Q Consensus 100 ~~~~~~f~~ya~~ 112 (330)
.+.+..-.+|+..
T Consensus 352 ~e~~~~ti~~~~~ 364 (472)
T TIGR03471 352 RETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 4445544555443
No 115
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=53.43 E-value=48 Score=33.27 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=63.0
Q ss_pred cHHHHHHHHHcCCCEEEecc-ccccccccCCCCCCCChHHHHHHHHHHHHHHHCC-CeEEEEcCCCCCchhhhhhcCCCC
Q 020130 21 YKEDIALVKQVGFDSIRFSI-SWSRILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
-+|.+++|+++|+|.+.+++ +-+.-.-+.- |+... .+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l--gR~~~--~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA--GRKDD--REEVLARLEELVARDRAAVVCDLI-FGLPG---------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh--CCCCC--HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC----------
Confidence 46889999999999888877 4332211111 33221 244667899999999 66766664 45552
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCccC
Q 020130 99 SPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTKA 144 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~~ 144 (330)
++.+.|.+=.+.+.+ ++ +.|..+...-||.......+..|..+
T Consensus 227 --qT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 123444444444433 34 67888888888876433333334443
No 116
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=53.24 E-value=10 Score=27.29 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=32.1
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 43 ~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
|++.|.. +.=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5677875 55567899999999999999999 888887643
No 117
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.77 E-value=34 Score=33.10 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
.+|++.+.+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998755443 12468999999999999998853
No 118
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=52.57 E-value=2.3e+02 Score=27.61 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC-------------chhhhhhc--CC------CCC---hhhHHHHHH
Q 020130 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-------------PQALEDEY--GG------FLS---PKIVKDFGD 108 (330)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-------------P~~l~~~~--gg------w~~---~~~~~~f~~ 108 (330)
+-++++-++-++++++.++++|-..++=|+|-.- |..+.... .. .+. .++++.|++
T Consensus 75 ~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 75 RLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999432 10010000 00 111 246888888
Q ss_pred HHHHHHHHhC-CCcceEEeccCCccccccccccCcc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 020130 109 YADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTK-APGRCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNY 186 (330)
Q Consensus 109 ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~ 186 (330)
=|+.+.+ -| |-|. +.+-.||+...| .|.. +. .++..+| | +-|-+.--...++.+|+..
T Consensus 155 AA~ra~~-aGfDgVE---------ih~ahGyLl~QFlSp~~-N~-RtD~yGG-s-------lenR~Rf~~eii~aIr~~v 214 (370)
T cd02929 155 AALRARD-AGFDIVY---------VYAAHGYLPLQFLLPRY-NK-RTDEYGG-S-------LENRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHHH-cCCCEEE---------EcccccchHHHhhCccc-cC-CccccCC-C-------hHhhhHHHHHHHHHHHHHc
Confidence 6665544 33 3332 345668887654 2321 10 1121222 2 2233334456777788765
Q ss_pred cCCCcccEEEEecCCcccc
Q 020130 187 QASQNGLIGITVSSIWAVP 205 (330)
Q Consensus 187 ~~~~~gkIGi~~~~~~~~P 205 (330)
. ++..||+-++..-..|
T Consensus 215 g--~~~~v~vRls~~~~~~ 231 (370)
T cd02929 215 G--DDCAVATRFSVDELIG 231 (370)
T ss_pred C--CCceEEEEecHHHhcC
Confidence 2 3567899888655444
No 119
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=52.24 E-value=63 Score=31.18 Aligned_cols=107 Identities=14% Similarity=0.221 Sum_probs=60.8
Q ss_pred HHHHHHcC--CCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC-CCchhhhh--hcCCCCC
Q 020130 25 IALVKQVG--FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DTPQALED--EYGGFLS 99 (330)
Q Consensus 25 i~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~--~~ggw~~ 99 (330)
++.+++.+ ++++=+.|.|..-. +. -.+|++..---++++++|++.|++.++.+.-+ ..-..+.. .+..|+|
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~~--~~--Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftn 105 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDNY--RT--FTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGR 105 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcCC--Cc--eeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCC
Confidence 44455445 45777777775321 11 23343332234689999999999987765311 10000000 0234788
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccc
Q 020130 100 PKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECG 137 (330)
Q Consensus 100 ~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~g 137 (330)
+++.+.|.+..+.+.+ .|- .-+|+=+|||.+....+
T Consensus 106 p~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~~ 141 (332)
T cd06601 106 PDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSYG 141 (332)
T ss_pred HHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCCC
Confidence 8888877666544332 332 34889999999875533
No 120
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=52.23 E-value=26 Score=38.04 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=43.1
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccccc--CCC---CCCCCh--HHHHHHHHHHHHHHHCCCeEEEEc--CCC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPH--GNI---SGGVNQ--QGVDFYNNLINELISNGLTPFVTL--FHW 84 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~--~~~---~g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~H~ 84 (330)
+....+-++-+++||++++=+|=-+.-.-.. |.. -..+|+ .+.+=+++++++|+++||.+|+++ +|.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 3446778999999999999777544321000 100 001121 134558899999999999999974 454
No 121
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=52.18 E-value=53 Score=31.56 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=66.0
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC-----chhhhhh
Q 020130 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE 93 (330)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~ 93 (330)
..+-++.+++.|+. ++=+.+.|.. +...=.+|++-.---+.+|++|+++|++.++.++-+-. |..-+-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~ 101 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD----GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAK 101 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC----CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHH
Confidence 34456777777765 4545555532 11001233332222468999999999999988764422 2111100
Q ss_pred ------------------------cCCCCChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCcccc
Q 020130 94 ------------------------YGGFLSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVG 134 (330)
Q Consensus 94 ------------------------~ggw~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~ 134 (330)
+-.+.|+++++.|.+..+.+....+ +-+-+|+=+|||.++.
T Consensus 102 ~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 102 DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 0136789999999888877665433 2357889999998653
No 122
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=52.18 E-value=54 Score=35.48 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=62.0
Q ss_pred cCCCEEEeccc-cccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC---CCCchh--hhhh-----------
Q 020130 31 VGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQA--LEDE----------- 93 (330)
Q Consensus 31 lG~~~~R~si~-W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~--l~~~----------- 93 (330)
+=++++++++. |.+ .-+. =.+|+.-.---+.||+.|+++||+.++-+.. -|.|+. +..+
T Consensus 294 IP~d~~~lD~~~~~~--~~~~--F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD--FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--cccc--eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 45679999995 886 1111 1233322223449999999999999988764 233322 1111
Q ss_pred -----------cCCCCChhhHHHHHHHHHHHHHHhCC--CcceEEeccCCcccccc
Q 020130 94 -----------YGGFLSPKIVKDFGDYADLCFKEFGD--RVKHWITLNEPETVGEC 136 (330)
Q Consensus 94 -----------~ggw~~~~~~~~f~~ya~~~~~~~g~--~v~~w~t~NEp~~~~~~ 136 (330)
+-.|+||+.++.|.+ ...+.+.| -.-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccc
Confidence 112689999998887 33333434 25788999999987544
No 123
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=51.66 E-value=19 Score=40.84 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEecccccccc-----ccC------CC-C--CCCCh--H--HHHHHHHHHHHHHHCCCeEEEEc
Q 020130 23 EDIALVKQVGFDSIRFSISWSRIL-----PHG------NI-S--GGVNQ--Q--GVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~-----P~~------~~-~--g~~n~--~--~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
+.|+-+|+||++++=+.=-..... +.+ .. . -.++. . ..+=+++||++|.++||++|++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 557899999999997753221110 000 00 0 01111 1 45568999999999999999973
No 124
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.57 E-value=1.5e+02 Score=27.88 Aligned_cols=151 Identities=21% Similarity=0.188 Sum_probs=81.6
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC---chh----------hhhhcCC-----CC---Chhh
Q 020130 44 RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQA----------LEDEYGG-----FL---SPKI 102 (330)
Q Consensus 44 ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~----------l~~~~gg-----w~---~~~~ 102 (330)
+..|... +-++++-++-++++++.++++|-..++=|.|-.- |.. ......+ -+ =.++
T Consensus 62 ~~~~~~~--~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~ 139 (327)
T cd02803 62 KGYPGQL--GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQI 139 (327)
T ss_pred cCCCCCc--CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 4444433 6789999999999999999999999999999421 110 0000000 00 1246
Q ss_pred HHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCcc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 020130 103 VKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTK-APGRCSNYIGNCPAGNSATEPYVAAHHLILSHATAVK 180 (330)
Q Consensus 103 ~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~ 180 (330)
++.|++-|+.+.+ -| |-|+ +.+..||+...| .|.... ..+-. |.+. -|-..--...++
T Consensus 140 i~~~~~aA~~a~~-aGfDgve---------ih~~~gyL~~qFlsp~~n~--R~d~y-Ggs~-------enr~r~~~eii~ 199 (327)
T cd02803 140 IEDFAAAARRAKE-AGFDGVE---------IHGAHGYLLSQFLSPYTNK--RTDEY-GGSL-------ENRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHHHHH-cCCCEEE---------EcchhhhHHHHhcCccccC--CCccc-CCCH-------HHHHHHHHHHHH
Confidence 8888888877654 33 3232 344567765543 332110 00111 1111 122222345666
Q ss_pred HHHHhccCCCcccEEEEecCCccccCCCCHHH-HHHHHH
Q 020130 181 LYRQNYQASQNGLIGITVSSIWAVPKFPTVAS-EKAAYR 218 (330)
Q Consensus 181 ~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D-~~aa~~ 218 (330)
.+|+... ++..||+-++.....+...++++ +..++.
T Consensus 200 avr~~~g--~d~~i~vris~~~~~~~g~~~~e~~~la~~ 236 (327)
T cd02803 200 AVREAVG--PDFPVGVRLSADDFVPGGLTLEEAIEIAKA 236 (327)
T ss_pred HHHHHcC--CCceEEEEechhccCCCCCCHHHHHHHHHH
Confidence 6776542 34688988887655443334444 333443
No 125
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=51.05 E-value=1.9e+02 Score=28.48 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=56.6
Q ss_pred cCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-EcCCCCCchhhhh
Q 020130 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-TLFHWDTPQALED 92 (330)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~ 92 (330)
++...-...+-++.++++|++.+=| ....+.|-+. ...+.. ...+++-+.|.++||++.. +..-+..|.+.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~~---~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-- 98 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFGA---PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK-- 98 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCCC---ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc--
Confidence 4455567788899999999999854 4455666541 111111 3367788889999999654 44323334331
Q ss_pred hcCCCCChh--hHHH-HHHHHH--HHHHHhCCC
Q 020130 93 EYGGFLSPK--IVKD-FGDYAD--LCFKEFGDR 120 (330)
Q Consensus 93 ~~ggw~~~~--~~~~-f~~ya~--~~~~~~g~~ 120 (330)
.||+.+++ ..+. +...-+ .++..+|-.
T Consensus 99 -~g~las~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 99 -DGGFTSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 26777743 2222 222212 236677764
No 126
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=50.99 E-value=1e+02 Score=29.40 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=63.2
Q ss_pred HHHHHHHHcCC--CEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC-----chhhhhh--
Q 020130 23 EDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE-- 93 (330)
Q Consensus 23 eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~-- 93 (330)
+-++.+++.++ +++=+.+.|..- .+. =.+|.+-.---+++|+.|+++|++.++.+.-+-. |...+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~--~~~--f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYMDS--YRL--FTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhhCC--CCc--eeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 34566666665 456666667531 111 2344443344568999999999998877643311 2211100
Q ss_pred ----------------------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCcc
Q 020130 94 ----------------------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (330)
Q Consensus 94 ----------------------~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (330)
+-.|+|++..+.|.+..+.+....|- .-+|+=+|||..
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCcc
Confidence 11368899999888877766544433 347789999964
No 127
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=50.99 E-value=39 Score=32.72 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCc
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTP 87 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P 87 (330)
.-++.++.|+++|++.+-+++ +-+ ++...- |+.. ..+-+.+.|+.+++.|+.++ ++|. +++|
T Consensus 98 lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 162 (360)
T TIGR00539 98 ITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQH--SAKNIAPAIETALKSGIENISLDLM-YGLP 162 (360)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCC
Confidence 346889999999999666666 232 233221 3211 13557789999999999754 4442 4555
No 128
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.88 E-value=80 Score=29.89 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=45.0
Q ss_pred cccCccccc---cHHHHHHHHHcCCCEEEecc----ccccccccCC-CCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 12 DVADNFYFR---YKEDIALVKQVGFDSIRFSI----SWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 12 ~~a~d~y~~---~~eDi~l~~~lG~~~~R~si----~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
|+|-+++-. .++=|++|+.+|+|.+-+=+ .++. .|.-. .+|.+..+- ++++++-++++||+++..+
T Consensus 7 D~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 7 DLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI 80 (301)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC
Confidence 455544433 67779999999999887744 3322 22211 126666644 7799999999999999876
No 129
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=50.74 E-value=27 Score=37.20 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHcCCCEEEecccccccc----c-c------CCC-C--CCCCh-----HHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 25 IALVKQVGFDSIRFSISWSRIL----P-H------GNI-S--GGVNQ-----QGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~----P-~------~~~-~--g~~n~-----~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
|+-+|+||++++=++=--.-.. + . |.. . -.++. ..++=+++||++|.++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 7899999999998763111100 0 0 000 0 01111 124559999999999999999974
No 130
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=48.62 E-value=3.8e+02 Score=28.90 Aligned_cols=152 Identities=17% Similarity=0.104 Sum_probs=85.2
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEEcCCCCC-----chhhhh----hcCCCC--------------
Q 020130 43 SRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFVTLFHWDT-----PQALED----EYGGFL-------------- 98 (330)
Q Consensus 43 ~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~vtL~H~~~-----P~~l~~----~~ggw~-------------- 98 (330)
+|+.|... |-++.+-++-++++++.+.++ |-..++=|.|-.- +.|... .-+||.
T Consensus 459 g~~~~~~~--~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~ 536 (765)
T PRK08255 459 GRITPGCP--GLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQ 536 (765)
T ss_pred cCCCCCCC--ccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCC
Confidence 45555543 778999999999999999999 6999999999321 111100 002221
Q ss_pred -----C----hhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCcc-CCCCCCCCCCCCCCCCCCChHHHH
Q 020130 99 -----S----PKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTK-APGRCSNYIGNCPAGNSATEPYVA 167 (330)
Q Consensus 99 -----~----~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (330)
+ .++++.|++=|+.+. +-| |-|. +.+-.||+...| .|-. +. .++-. |.|
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~-~aGfDgve---------ih~ahGyLl~qFlsp~~-N~-RtD~y-GGs------- 596 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAA-EAGFDWLE---------LHCAHGYLLSSFISPLT-NQ-RTDEY-GGS------- 596 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEE---------EecccchHHHHhcCCCC-CC-CCCCC-CCC-------
Confidence 0 136788888666544 344 3332 345678886644 3321 10 00111 222
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccEEEEecCCccccCCCCHHH-HHHHHH
Q 020130 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVAS-EKAAYR 218 (330)
Q Consensus 168 ~hn~llAHa~av~~~r~~~~~~~~gkIGi~~~~~~~~P~~~~~~D-~~aa~~ 218 (330)
.-|-+.--..+++.+|+..+ .+..||+-++..-..+...+++| +..++.
T Consensus 597 lenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~ 646 (765)
T PRK08255 597 LENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWVEGGNTPDDAVEIARA 646 (765)
T ss_pred HHHHhHHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCCHHHHHHHHHH
Confidence 22444444567888887653 24679998886543333334544 344443
No 131
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=48.04 E-value=1.4e+02 Score=28.94 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=60.2
Q ss_pred ccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh
Q 020130 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (330)
Q Consensus 13 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (330)
+|.=||+ |+= .....+.|++.||+ -| |.+-.+ +....+++.++++|+..=+..+|-.+.+-+.+
T Consensus 78 VaDiHf~-~rl-a~~~~~~g~~k~RI-------NP-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 78 VADIHFD-YRL-ALEAAECGVDKVRI-------NP-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred EEEeecc-HHH-HHHhhhcCcceEEE-------CC-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 3444565 433 33445667888875 34 333222 37889999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHH
Q 020130 93 EYGGFLSPKIVKDFGDYADLC 113 (330)
Q Consensus 93 ~~ggw~~~~~~~~f~~ya~~~ 113 (330)
+|++-+.+..++--.++|+.+
T Consensus 142 ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 142 KYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 998776666666555666543
No 132
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=47.70 E-value=58 Score=31.89 Aligned_cols=94 Identities=24% Similarity=0.457 Sum_probs=56.6
Q ss_pred HcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHH--HHHHHCCCeEEEEcCCCCCchhhhhhc---CCCCChhhHH
Q 020130 30 QVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLI--NELISNGLTPFVTLFHWDTPQALEDEY---GGFLSPKIVK 104 (330)
Q Consensus 30 ~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i--~~l~~~gi~p~vtL~H~~~P~~l~~~~---ggw~~~~~~~ 104 (330)
++|++..|+.|.=.+.--. |..|. +|+++= ...+++|+++|.+- |..|.|+.+.. ||=..+--.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~----g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e 146 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG----GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYE 146 (433)
T ss_pred ccCceEEEEEecccccccC----CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchh
Confidence 4788888888765554332 45553 344432 33678899999886 78999986542 3311111245
Q ss_pred HHHHHHHHH---HHHhC---CCcceEEeccCCccc
Q 020130 105 DFGDYADLC---FKEFG---DRVKHWITLNEPETV 133 (330)
Q Consensus 105 ~f~~ya~~~---~~~~g---~~v~~w~t~NEp~~~ 133 (330)
.|+.||+.+ +..++ --+.+-.+=|||.-.
T Consensus 147 ~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 147 KYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 555665554 33443 346666789999754
No 133
>PRK12677 xylose isomerase; Provisional
Probab=47.68 E-value=2e+02 Score=28.35 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchhhhhhcCCCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~ 98 (330)
-..|-++.++++|++++=+.. ..+.|-.. ..... -+..+++-+.+.++||++. +|...|..|.+ +.|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~~---~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFGA---TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCCC---Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCC
Confidence 468899999999999986632 33455331 11111 1346788888999999966 56655555544 237887
Q ss_pred Chhh-HHHH-HHHHHH---HHHHhCCC
Q 020130 99 SPKI-VKDF-GDYADL---CFKEFGDR 120 (330)
Q Consensus 99 ~~~~-~~~f-~~ya~~---~~~~~g~~ 120 (330)
+++- +.++ .++.+. ++..+|-.
T Consensus 103 s~d~~~R~~Ai~~~~r~IdlA~eLGa~ 129 (384)
T PRK12677 103 SNDRDVRRYALRKVLRNIDLAAELGAK 129 (384)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7432 2222 333333 35667653
No 134
>PLN02960 alpha-amylase
Probab=47.55 E-value=41 Score=36.74 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=58.1
Q ss_pred cccccHHH-HHHHHHcCCCEEEeccc--------cc-------cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 17 FYFRYKED-IALVKQVGFDSIRFSIS--------WS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 17 ~y~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
.|.-..+. ++-+++||++++=+.=- |- .+.|.- |. .+=++.+|++|.++||.+|+.
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 44445444 89999999999887521 11 111110 22 234889999999999999998
Q ss_pred c--CCCCC--c--h---------hhhh--h--cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020130 81 L--FHWDT--P--Q---------ALED--E--YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 81 L--~H~~~--P--~---------~l~~--~--~ggw-------~~~~~~~~f~~ya~~~~~~~g 118 (330)
+ .|+.. + . +... + ...| .++++.+.+.+=++.-+++|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6 45421 1 0 1110 0 0113 246677888888888888887
No 135
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=47.33 E-value=56 Score=29.84 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=44.0
Q ss_pred ccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 020130 39 SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 39 si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 118 (330)
.+.|..+-++|. -.... .......+++.++++|+++++.+..++...... -..+++..+.|++=+-..+++||
T Consensus 27 ~~~f~~i~~~G~--l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGT--LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCe--EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 345667666553 11211 123467889999999999999987665432111 12356666777666655666664
No 136
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=46.96 E-value=1.1e+02 Score=30.02 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=53.9
Q ss_pred HHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHH
Q 020130 29 KQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGD 108 (330)
Q Consensus 29 ~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ 108 (330)
.+.|++.+| |-| |.+-. --+..+.+++.++++|+..=+..+|-.++.-+.++||+-+....++--.+
T Consensus 98 ~~~G~~~iR-------INP-----GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 98 AEAGADALR-------INP-----GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHhCCCEEE-------ECC-----CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 467899995 545 43411 02578899999999999999999999999999999866444556666666
Q ss_pred HHHHH
Q 020130 109 YADLC 113 (330)
Q Consensus 109 ya~~~ 113 (330)
+++.+
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 66654
No 137
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=46.78 E-value=95 Score=29.94 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCch
Q 020130 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (330)
+++.+|++|.+++.|=+-|. |+.. ..+|..-.++.+++.++|++.||--++-+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDA--EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCC--hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 37889999999999988775 3332 458888899999999999999999999888776553
No 138
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.60 E-value=51 Score=30.37 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
.+|++.+++.|++.+|+.++.+.+. -..+.++.++++|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6899999999999999887666431 246789999999999999884
No 139
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=46.50 E-value=1.3e+02 Score=28.60 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCC--CEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---CCchhhh-----
Q 020130 22 KEDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALE----- 91 (330)
Q Consensus 22 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~----- 91 (330)
.+-++.+++.|+ +++=+.+.|.. ..+-.+=.+|.+-.---+++|++|+++|+++++.+.-+ +.+.+-+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhc--CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 344566777655 45555554432 11100012344444445799999999999988866422 1111100
Q ss_pred ----hh--------------cCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc
Q 020130 92 ----DE--------------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (330)
Q Consensus 92 ----~~--------------~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (330)
+. +-.|+|+++.+.|.+..+..+...|- --+|+=+|||...
T Consensus 105 ~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 105 YLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYS 163 (319)
T ss_pred EEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCcc
Confidence 00 01267888888776655444433332 4677999999865
No 140
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.45 E-value=1.6e+02 Score=28.01 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc---hhhh--hh-
Q 020130 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP---QALE--DE- 93 (330)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~--~~- 93 (330)
.+-++.+++.|+. ++=+.+.|....-.....-.+|.+..---++||++|+++|++.++.+.-+-.+ ..-+ ++
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 4446777788864 55455556543110000012333333335699999999999999876543222 1100 00
Q ss_pred -----------c-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCcc
Q 020130 94 -----------Y-----------GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (330)
Q Consensus 94 -----------~-----------ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (330)
+ -.++|++..+.|.+..+..+...|- .-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 1146888888887766554444432 357788999974
No 141
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=45.93 E-value=82 Score=29.59 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
--.+|++.+.+.|++.+-+.++=|...-.... +.=-++.++.+.++++.++++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35899999999999999988866665443211 33356789999999999999999999887
No 142
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.92 E-value=86 Score=32.77 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
++|++.+++.|++.+|+..+.+.+ +-....|+.++++|+.+.+++..-+.|
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 144 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSP 144 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCC
Confidence 445899999999999998766553 124566677777787777776554445
No 143
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.86 E-value=67 Score=31.02 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
..+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|+++.+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 3689999999999999988754332 1246889999999999988774
No 144
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=45.69 E-value=1.2e+02 Score=30.59 Aligned_cols=95 Identities=20% Similarity=0.380 Sum_probs=56.5
Q ss_pred cHHH-HHHHHHcCCCEEEec-------ccccc-ccccCCCCC---------CCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 21 YKED-IALVKQVGFDSIRFS-------ISWSR-ILPHGNISG---------GVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 21 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~~~~~g---------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
++.| +.++|+|.+..+|+. -.|.. |-|.....- +-|+=| .+++++.|++.|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4555 689999999999852 23432 112111000 111212 46899999999999999985
Q ss_pred CCCCchhhhhhcCCCCChhhHHHHHHHHHH--------HHHHhCC----CcceEEeccCC
Q 020130 83 HWDTPQALEDEYGGFLSPKIVKDFGDYADL--------CFKEFGD----RVKHWITLNEP 130 (330)
Q Consensus 83 H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~--------~~~~~g~----~v~~w~t~NEp 130 (330)
= |. ..-+....|.+||.. .-...|- .|++|.+=||.
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 2 11 222344556665532 2344443 49999999996
No 145
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=45.54 E-value=85 Score=32.35 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=64.2
Q ss_pred cHHHHHHHHHcCCCEEEecc-c-cccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC
Q 020130 21 YKEDIALVKQVGFDSIRFSI-S-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~-W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
-+|.+++|+++|++.+-+++ + -.+++-.-. +| .+ ++-..+.++.+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 46889999999999777776 1 222222110 01 12 34466788999999998776664 45552
Q ss_pred ChhhHHHHHHHHHHHHH--HhC-CCcceEEeccCCccccccccccCccCC
Q 020130 99 SPKIVKDFGDYADLCFK--EFG-DRVKHWITLNEPETVGECGYAKGTKAP 145 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~--~~g-~~v~~w~t~NEp~~~~~~gy~~g~~~P 145 (330)
++.+.+.+=++.+++ .++ |.|+.+.+.=+|......-|..|.|.|
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 224455555555665 354 567777665566544433355566655
No 146
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=44.83 E-value=29 Score=34.56 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEecccccccccc-CCC---CCCC--ChHHHHHHHHHHHHHHHCCCeEEEEc--CC
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPH-GNI---SGGV--NQQGVDFYNNLINELISNGLTPFVTL--FH 83 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~-~~~---~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL--~H 83 (330)
+-++.+++||++++=++=--.-+... +.. --.+ ....++-.+++++++.++||++++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 67899999999999654211110000 100 0112 23346779999999999999999987 55
No 147
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=44.76 E-value=1.1e+02 Score=33.10 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=64.7
Q ss_pred HHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---CCCCc-----------h
Q 020130 25 IALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTP-----------Q 88 (330)
Q Consensus 25 i~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P-----------~ 88 (330)
++.++++|+. ..=..|.|-.-.-+ =.+|....-...++++.|.++|++.++.+. +-+.. .
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~ykD----FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYKD----FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhcccc----eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 5777777776 44444444432222 245665555688999999999999999886 22222 1
Q ss_pred hhhh----------hcCC------CCChhhHHHHHHHHHHHHHHhCCCcc---eEEeccCCccccc
Q 020130 89 ALED----------EYGG------FLSPKIVKDFGDYADLCFKEFGDRVK---HWITLNEPETVGE 135 (330)
Q Consensus 89 ~l~~----------~~gg------w~~~~~~~~f~~ya~~~~~~~g~~v~---~w~t~NEp~~~~~ 135 (330)
|+.+ -..| ++|+++++.+ ...+++|.+.|. +|+-+|||..+..
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 1111 1122 5677665544 445668888775 8999999976553
No 148
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=44.16 E-value=42 Score=32.46 Aligned_cols=112 Identities=22% Similarity=0.445 Sum_probs=61.3
Q ss_pred ccccHHHHHHHHHcCCCEEEecc----ccccccccCC--------------------------CCCCCC----hHHHHHH
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSI----SWSRILPHGN--------------------------ISGGVN----QQGVDFY 63 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si----~W~ri~P~~~--------------------------~~g~~n----~~~~~~y 63 (330)
|.||++.|+.|+=-|+|..=.-+ -|.|++-+-. -.|++. .+-.+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 78999999999999999653222 2444433210 013322 2334556
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCchhhhhhc--------CCC--------CChhhHHHHHHHHHHH----HHHhCCCcce
Q 020130 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGF--------LSPKIVKDFGDYADLC----FKEFGDRVKH 123 (330)
Q Consensus 64 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw--------~~~~~~~~f~~ya~~~----~~~~g~~v~~ 123 (330)
+++++.+++-||+|++-=+---+|..|.+++ +.| +++ .-..|++.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999999877666788888776 223 233 335676666554 56688 4555
Q ss_pred EE--eccCCc
Q 020130 124 WI--TLNEPE 131 (330)
Q Consensus 124 w~--t~NEp~ 131 (330)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 54 888843
No 149
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.09 E-value=1.6e+02 Score=28.05 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCC--CEEEeccccccccccC--CCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---CCchhh--hh
Q 020130 22 KEDIALVKQVGF--DSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQAL--ED 92 (330)
Q Consensus 22 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l--~~ 92 (330)
.+-++-+++.|+ +++=+.+.|....... ..+=.+|.+-.---+++|++|+++|+++++.+.-+ +.|..- .+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344667777775 5777777785433211 00012333333335689999999999999887643 223320 00
Q ss_pred h-c-------------------C---CCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc
Q 020130 93 E-Y-------------------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (330)
Q Consensus 93 ~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (330)
+ | + .|+|+++.+.|.+..+.+ ...| ---+|+=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 0 1 256899888887776654 2222 13457899999653
No 150
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=44.07 E-value=61 Score=30.66 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccccccccc
Q 020130 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA 139 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~ 139 (330)
++-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+...+.-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 34577899999999999877654 34441 234566666665544323568888877788765544455
Q ss_pred cCccCC
Q 020130 140 KGTKAP 145 (330)
Q Consensus 140 ~g~~~P 145 (330)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 555543
No 151
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=43.74 E-value=41 Score=31.30 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 84 (330)
.+++.+++.|++.+|+.++=|...-.... |.--++.++...+.++.+++.|+++.++..+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEAL-GTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 57899999999999998865544322110 33346678899999999999999998876655
No 152
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=42.91 E-value=2.6e+02 Score=27.72 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCEEEeccccccc-----------cccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---------
Q 020130 23 EDIALVKQVGFDSIRFSISWSRI-----------LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------- 82 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri-----------~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------- 82 (330)
+-++.++++|++.+=+.--|..- +|+. .++ +.| ...+++.+++.|+++=+=+-
T Consensus 62 ~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S~ 134 (394)
T PF02065_consen 62 ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDSD 134 (394)
T ss_dssp HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSSC
T ss_pred HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchhH
Confidence 34688999999998888899643 3332 122 234 66899999999999765320
Q ss_pred -CCCCchhhhhhcCC-------------CCChhhHHHHHHHHHHHHHHhC
Q 020130 83 -HWDTPQALEDEYGG-------------FLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 83 -H~~~P~~l~~~~gg-------------w~~~~~~~~f~~ya~~~~~~~g 118 (330)
--..|.|+... ++ ..++++.+...+-...+++.+|
T Consensus 135 l~~~hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 135 LYREHPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp HCCSSBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 12458886532 11 3467788887777777777776
No 153
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=42.35 E-value=1.1e+02 Score=30.09 Aligned_cols=104 Identities=13% Similarity=0.220 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEcCCCCCchhhhhhcCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 96 (330)
.-++.++.|+++|++.+-+++ +-+ ++.-.- |+.. ..+-..+.++.+++.|+. +-++|. +++|.
T Consensus 113 lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg-------- 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH-------- 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 356889999999999666665 221 222111 2221 123466789999999998 556664 45662
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCc
Q 020130 97 FLSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGT 142 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~ 142 (330)
++.+.+.+=++.+.+ ++ +.|..+...-||......-+..|.
T Consensus 179 ----qt~e~~~~tl~~~~~-l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 179 ----QTLEDWQASLEAAIA-LNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred ----CCHHHHHHHHHHHHc-CCCCEEEEecceecCCchhHHHhhcCC
Confidence 223344443443332 34 567777777777754433344443
No 154
>PLN03153 hypothetical protein; Provisional
Probab=42.05 E-value=30 Score=35.42 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=41.7
Q ss_pred HHHHCC-CeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHH----HHHHHh--CCCcceEEeccCCccccccccccC
Q 020130 69 ELISNG-LTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYAD----LCFKEF--GDRVKHWITLNEPETVGECGYAKG 141 (330)
Q Consensus 69 ~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~----~~~~~~--g~~v~~w~t~NEp~~~~~~gy~~g 141 (330)
.+.+.| ++|+|+||||+. | +.-|.+-...+.++.|..=|+ .++++. +|+..-|..- ...||..-
T Consensus 326 G~les~p~~P~vSlHH~~~--~-~p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEA--V-DPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccc--c-ccccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 355555 999999999996 1 111344444556777765442 233444 5666667543 66788876
Q ss_pred ccCCC
Q 020130 142 TKAPG 146 (330)
Q Consensus 142 ~~~Pg 146 (330)
.++-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 66544
No 155
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.03 E-value=88 Score=29.21 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=51.4
Q ss_pred cCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhh
Q 020130 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (330)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 90 (330)
+.+..+...+=.+.+|++|+..+|-+..=+|--|.+. .| +-+ +.++.+-+.+++.||..+.+.+.-.....+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 4556666777789999999999999986677766542 12 223 456677777899999999988764444333
No 156
>PLN02389 biotin synthase
Probab=41.60 E-value=84 Score=30.94 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHcCCCEEEecccccc-ccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~r-i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
.-+|.++.||+.|++.|-.+++=++ ++|.-. ..- ..+..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885233 445421 111 34567799999999999987764
No 157
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=41.47 E-value=50 Score=31.05 Aligned_cols=69 Identities=16% Similarity=0.349 Sum_probs=47.4
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (330)
.++-+++++++|++.+.+.+- +.=+++.+++|+++++.+.++.| +|.+|--..|.-++..|.-...+
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHH
Confidence 366689999999999998751 22478899999999999999986 55666555677676666555554
Q ss_pred hh
Q 020130 101 KI 102 (330)
Q Consensus 101 ~~ 102 (330)
|.
T Consensus 175 Eg 176 (273)
T PF10566_consen 175 EG 176 (273)
T ss_dssp --
T ss_pred HH
Confidence 43
No 158
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.67 E-value=75 Score=28.48 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHH
Q 020130 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKD 105 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 105 (330)
+.+++.|++.+|+.++=|........ +.--++.++...++++.+++.|+++.+++-+.. +-..+.
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~--------------~~~~~~ 138 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNL-NKSREEALERIEEAVKYAKELGYEVAFGCEDAS--------------RTDPEE 138 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG--------------GSSHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCccccc--------------cccHHH
Confidence 34456999999999877665443210 333356788899999999999999987774421 123456
Q ss_pred HHHHHHHHHHH
Q 020130 106 FGDYADLCFKE 116 (330)
Q Consensus 106 f~~ya~~~~~~ 116 (330)
+.++++.+.+.
T Consensus 139 ~~~~~~~~~~~ 149 (237)
T PF00682_consen 139 LLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 67777776554
No 159
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=40.31 E-value=85 Score=29.64 Aligned_cols=63 Identities=14% Similarity=0.339 Sum_probs=44.2
Q ss_pred cHHHHHHHHHcCCCEEEeccc----cc---cccccCC----------CCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 21 YKEDIALVKQVGFDSIRFSIS----WS---RILPHGN----------ISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~----W~---ri~P~~~----------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
.++-|+.|+..++|.+.+-++ |+ ...|+-. .+|.+.++ =.+++++-++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 566789999999999887776 52 1223211 11445553 47799999999999999876
Q ss_pred CCCchh
Q 020130 84 WDTPQA 89 (330)
Q Consensus 84 ~~~P~~ 89 (330)
|+|-.
T Consensus 93 -D~PGH 97 (303)
T cd02742 93 -DMPGH 97 (303)
T ss_pred -cchHH
Confidence 66654
No 160
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=39.67 E-value=77 Score=28.51 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=45.2
Q ss_pred CccccCCCCCccc---CccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 020130 2 AEKILDHSNGDVA---DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (330)
Q Consensus 2 ~~~~~~~~~~~~a---~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (330)
||+++ -++|... .+-.-.-+.-+++|++||.+++.| +|-+ |.-. ++=|+.+-+.|.++|+..=
T Consensus 116 ~G~Vk-IsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKf-------fPm~---Gl~~---leE~~avAkA~a~~g~~lE 181 (218)
T PF07071_consen 116 PGKVK-ISTGPLSSQGPDAIVPVETAIAMLKDMGGSSIKF-------FPMG---GLKH---LEELKAVAKACARNGFTLE 181 (218)
T ss_dssp TTEEE----STTHHGSS--EEEHHHHHHHHHHTT--EEEE----------T---TTTT---HHHHHHHHHHHHHCT-EEE
T ss_pred ceEEE-eccCCccccCCCccccHHHHHHHHHHcCCCeeeE-------eecC---Cccc---HHHHHHHHHHHHHcCceeC
Confidence 45443 3445443 333445678899999999999986 7876 5322 3458888899999996432
Q ss_pred EEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHH
Q 020130 79 VTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFK 115 (330)
Q Consensus 79 vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 115 (330)
+-||.. .+.|....+.|.+
T Consensus 182 --------------PTGGId----l~N~~~I~~i~l~ 200 (218)
T PF07071_consen 182 --------------PTGGID----LDNFEEIVKICLD 200 (218)
T ss_dssp --------------EBSS------TTTHHHHHHHHHH
T ss_pred --------------CcCCcC----HHHHHHHHHHHHH
Confidence 227753 3446666666654
No 161
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.30 E-value=41 Score=30.78 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=40.4
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
....++.-+++++.+|.+++++........+.. ...-+..++.++.+.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 345566668999999999999864322111111 1112345678889999999999987665
No 162
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=38.75 E-value=58 Score=38.30 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHcCCCEEEecccccccc--ccCCC---CCCCCh--HHHHHHHHHHHHHHHCCCeEEEEc--CCCC
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRIL--PHGNI---SGGVNQ--QGVDFYNNLINELISNGLTPFVTL--FHWD 85 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~--P~~~~---~g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL--~H~~ 85 (330)
+....+-++-+++||++++=+|=-+.-.- ..|.. -..+|+ .+.+=+++++++|+++||.+|+++ +|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 34466778999999999997775444110 00000 011222 134558999999999999999975 4653
No 163
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=38.50 E-value=92 Score=25.87 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 020130 61 DFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~ 120 (330)
+=+.-+++.|++.|++|++.+.=. -+.|.. |-|. +++..+.|.+=.+..++++|=.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQPV-NGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEecCC-cHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 336789999999999999987310 023432 4664 6677777777777778888764
No 164
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.43 E-value=1.4e+02 Score=29.06 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHcCCCEEEecc-cc-ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchhhhhhcCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SW-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg 96 (330)
.-+|.+++|+++|++.+-+++ += .++...-. ...+ .+-..+.++.+++.|+..+ +.+ =+++|.
T Consensus 98 l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~--r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg-------- 163 (377)
T PRK08599 98 LTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG--RTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG-------- 163 (377)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC--CCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC--------
Confidence 357889999999999777776 22 23333221 2223 3557789999999999743 333 245552
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccc
Q 020130 97 FLSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETV 133 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~ 133 (330)
.+ .+.|.+=.+.+. +++ +.|..+...-+|...
T Consensus 164 -qt---~~~~~~~l~~~~-~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 164 -QT---IEDFKESLAKAL-ALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred -CC---HHHHHHHHHHHH-ccCCCEEeeeceeecCCCh
Confidence 23 344444444433 343 345555444566543
No 165
>PTZ00445 p36-lilke protein; Provisional
Probab=38.22 E-value=64 Score=29.29 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChH---------HHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQ---------GVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
++++++.|++++=+.+.=.-|---.. |-.++. +-.-...++.+|+++||.+.|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg--G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG--GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc--cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68999999999988877654431110 322222 234477899999999999988765
No 166
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=38.05 E-value=73 Score=33.30 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEE--cCCCC----------Cchhhhh--h------cCCC------CChhhHHHHHHHHHHH
Q 020130 60 VDFYNNLINELISNGLTPFVT--LFHWD----------TPQALED--E------YGGF------LSPKIVKDFGDYADLC 113 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vt--L~H~~----------~P~~l~~--~------~ggw------~~~~~~~~f~~ya~~~ 113 (330)
++=+++||++|.++||++|+. +.|.. .|.|... . +.|| .++.+.+.+.+-++.-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W 307 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYW 307 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHH
Confidence 356999999999999999997 44642 1333210 0 1122 2456667777777777
Q ss_pred HHHhC
Q 020130 114 FKEFG 118 (330)
Q Consensus 114 ~~~~g 118 (330)
+++||
T Consensus 308 ~~e~~ 312 (605)
T TIGR02104 308 VKEYN 312 (605)
T ss_pred HHHcC
Confidence 77776
No 167
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=37.50 E-value=2.1e+02 Score=24.05 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHcCCCEEEeccc-cccc-cccCCCCCCCChHHHHHHHHHHHHHHHCC-CeEEEEc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSIS-WSRI-LPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTL 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 81 (330)
...-++.++.|++.|++.+.+|++ ++.= ...-. ...+ .+.+.+.|+.++++| +.+.+.+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~--~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN--RGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc--CCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 344578899999999999999985 5432 11111 1122 367888999999999 5554433
No 168
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=37.38 E-value=1.4e+02 Score=26.19 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
-|.+.+|+.|++.+=+=. -+|. +.+|+ .+..-++.++++|| .+..+||-.|
T Consensus 13 idw~~vk~~g~~fviiKa------teG~--~~~D~----~~~~n~~~A~~aGl--~~G~Yhf~~~ 63 (199)
T cd06412 13 VDWSGAAANGARFAYVKA------TEGT--SYTNP----RFSSQYNGAYNAGL--IRGAYHFALP 63 (199)
T ss_pred CCHHHHHhCCCeEEEEEE------ecCC--CccCh----hHHHHHHHHHHcCC--ceEEEEEeec
Confidence 467888888877432222 1343 55775 58888999999998 5588998755
No 169
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=37.36 E-value=66 Score=29.62 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=40.1
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
-.+++.-+++++++|.+.++++- .+..+... ....-...++.++++.+.+.++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 34567778999999999999852 11111110 011122356778889999999999888754
No 170
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=37.03 E-value=1.8e+02 Score=28.61 Aligned_cols=93 Identities=23% Similarity=0.376 Sum_probs=58.9
Q ss_pred cccCccccccHHHHHHHHHc-CCCEEEecc--ccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCc
Q 020130 12 DVADNFYFRYKEDIALVKQV-GFDSIRFSI--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTP 87 (330)
Q Consensus 12 ~~a~d~y~~~~eDi~l~~~l-G~~~~R~si--~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P 87 (330)
+.+.+-.++ -+|++.+.++ ++. .++++ .| . ...| +.++.+.++++||++. ++...|..|
T Consensus 34 g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~ 96 (378)
T TIGR02635 34 GAARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RVED------YEELARYAEELGLKIGAINPNLFQDD 96 (378)
T ss_pred CCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---cccC------HHHHHHHHHHcCCceeeeeCCccCCc
Confidence 334444443 6788888888 555 66655 44 2 1122 6688888999999998 788777666
Q ss_pred hhhhhhcCCCCCh--hhHHHHHHHHHHH---HHHhCCC-cceE
Q 020130 88 QALEDEYGGFLSP--KIVKDFGDYADLC---FKEFGDR-VKHW 124 (330)
Q Consensus 88 ~~l~~~~ggw~~~--~~~~~f~~ya~~~---~~~~g~~-v~~w 124 (330)
.+ ++|.+.|+ ++.+.-.++++.| ++.+|.. |..|
T Consensus 97 ~~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 97 DY---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred cc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 54 34677775 3455556666554 5778874 4444
No 171
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=36.94 E-value=2.2e+02 Score=25.98 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEE
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFVT 80 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~vt 80 (330)
..+++.+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 6689999999999999998888766544432 1233 3466777777777 6665543
No 172
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=36.92 E-value=1.9e+02 Score=28.12 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEcCCCCCchhhhhhcCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 96 (330)
.-+|.+++|+++|++.+.+++ +-+ ++.-.- ++.. ..+-..+.++.+++.|+. +.++|. +++|.
T Consensus 106 i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg-------- 171 (375)
T PRK05628 106 TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL---DRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG-------- 171 (375)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC--------
Confidence 456889999999999666665 322 222111 2221 234577899999999998 656653 34442
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccc
Q 020130 97 FLSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETV 133 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~ 133 (330)
++.+.|.+=.+.+. +++ +.|..+...=||...
T Consensus 172 ----qt~~~~~~tl~~~~-~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 ----ESDDDWRASLDAAL-EAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred ----CCHHHHHHHHHHHH-hcCCCEEEeeeeecCCCCh
Confidence 23444544444433 344 456555544466543
No 173
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=36.02 E-value=72 Score=25.70 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-cccCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 020130 22 KEDIALVKQVGFDSIRFSIS-WSRI-LPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p 77 (330)
++.++.|++.|++.+++|++ -+.- .-+.. + .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~--~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII--N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH--S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh--c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999983 3322 11110 1 1223566779999999999995
No 174
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.59 E-value=2.8e+02 Score=25.37 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
..+.|-+++++++|++++=+++......+.. -.... +.-..+-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCcee
Confidence 4588999999999999999976544322222 11222 3466788899999999753
No 175
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.21 E-value=3.5e+02 Score=24.65 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
.+++-+++++++|++.+=+++.=....+.. ..++. +..+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 478899999999999998864211111111 11233 3466788888999999753
No 176
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.57 E-value=2.5e+02 Score=24.15 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
-|.+.+|+.|++.+=+=+. +|. +.+|+ .|..-++.++++||. +..+||-.|
T Consensus 12 id~~~~k~~gi~fviiKat------eG~--~y~D~----~~~~~~~~a~~aGl~--~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EGT--TFVDS----YFNENYNGAKAAGLK--VGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CCC--cccCH----hHHHHHHHHHHCCCc--eEEEEEeeC
Confidence 4678888888775433221 343 55675 688899999999983 588887654
No 177
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.26 E-value=2.2e+02 Score=24.72 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
+|+. .-|.+.+|+.|++.+=+=+ -+|. +.+|+ .+..-+..++++||. +..+||-
T Consensus 10 ~~q~-~id~~~vk~~gi~fviiKa------teG~--~~~D~----~~~~~~~~a~~~Gl~--vG~Yhy~ 63 (191)
T cd06413 10 HHQG-DIDWARVRAQGVSFAYIKA------TEGG--DHVDK----RFAENWRGARAAGLP--RGAYHFF 63 (191)
T ss_pred CCCC-CcCHHHHHhCCCcEEEEEE------cCCC--CccCH----HHHHHHHHHHHcCCc--eEEEEEE
Confidence 3443 3477888888887543322 1343 56775 688889999999983 3778873
No 178
>PRK01060 endonuclease IV; Provisional
Probab=34.12 E-value=2.2e+02 Score=26.03 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p 77 (330)
.-+++-++.++++|++++=+.+.-++.... +..+.+- .+++-+.+.++||++
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCHHH---HHHHHHHHHHcCCCC
Confidence 347889999999999999998776655432 3455533 445666788999984
No 179
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=33.84 E-value=4.5e+02 Score=25.53 Aligned_cols=193 Identities=18% Similarity=0.159 Sum_probs=103.0
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc---h-------hhh-----hh--------------cCCCC----C
Q 020130 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP---Q-------ALE-----DE--------------YGGFL----S 99 (330)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P---~-------~l~-----~~--------------~ggw~----~ 99 (330)
+-.|.+-++-++++.+.++++|-..++=|+|-.-- . .+. .. ..+-. +
T Consensus 71 ~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt 150 (362)
T PRK10605 71 GLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE 150 (362)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC
Confidence 56788899999999999999999999999994310 0 000 00 00000 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccccccccccCcc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 020130 100 ----PKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTK-APGRCSNYIGNCPAGNSATEPYVAAHHLIL 173 (330)
Q Consensus 100 ----~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~ll 173 (330)
.++++.|++=|+.+.+ -| |-|. +.+..||+...| .|.. +. .++- .|.| .-|-+.
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~-AGfDGVE---------Ih~ahGyLl~qFLSp~~-N~-RtDe-YGGs-------lENR~R 210 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANARE-AGFDLVE---------LHSAHGYLLHQFLSPSS-NQ-RTDQ-YGGS-------VENRAR 210 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EcccccchHHHhcCCcC-CC-CCCc-CCCc-------HHHHHH
Confidence 3568888886655443 43 4343 456778887754 3431 11 0011 1222 234444
Q ss_pred HHHHHHHHHHHhccCCCcccEEEEecCCcc---ccCCCCHHH--HHHHHHHhhhhcccchhhhh---cC--CCChhHHHh
Q 020130 174 SHATAVKLYRQNYQASQNGLIGITVSSIWA---VPKFPTVAS--EKAAYRAIDFKFGWIFNPIT---YG--SYPRSMQHL 243 (330)
Q Consensus 174 AHa~av~~~r~~~~~~~~gkIGi~~~~~~~---~P~~~~~~D--~~aa~~~~~~~~~~fldp~~---~G--~YP~~~~~~ 243 (330)
=--.+++.+|+.... . .||+-++..-. .+...+.++ +..+...... .--++++-. .+ .|+..+.+.
T Consensus 211 f~~Eiv~aVr~~vg~--~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~-giD~i~vs~~~~~~~~~~~~~~~~~ 286 (362)
T PRK10605 211 LVLEVVDAGIAEWGA--D-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKR-GIAYLHMSEPDWAGGEPYSDAFREK 286 (362)
T ss_pred HHHHHHHHHHHHcCC--C-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHc-CCCEEEeccccccCCccccHHHHHH
Confidence 455778888877532 3 59998876421 122234444 3444433221 011333221 11 234334333
Q ss_pred hcCC--CC-----CCCHhHHhhc-C-CCccEEEEe
Q 020130 244 VGNR--LP-----KFTKSQAEMV-K-GSVDFLGLN 269 (330)
Q Consensus 244 ~~~~--lp-----~~t~~d~~~i-k-g~~DFiGiN 269 (330)
+++. .| .+|+++.+.+ + |.+|++|+-
T Consensus 287 ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 287 VRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 4322 12 3577776654 3 789999986
No 180
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=33.45 E-value=1.8e+02 Score=25.62 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC------------------
Q 020130 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW------------------ 84 (330)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------------ 84 (330)
-|...+++-|++.+=+=. -+|. +.+|+ .|..-++.++++||. +..+||
T Consensus 20 IDw~~v~~~gi~Fv~iKA------TEG~--~~~D~----~f~~n~~~A~~~Gl~--vGaYHf~~~~~~~~~QA~~F~~~v 85 (190)
T cd06419 20 IDFNSLQSNGISFVYLRA------TQGA--SYFDD----NFLSNFSRAQGTGLS--VGVIHTFSFSSTAAAQYRYFIRKV 85 (190)
T ss_pred cCHHHHHhCCCeEEEEEe------ecCC--CccCh----hHHHHHHHHHHCCCC--EEEEEEeecCCCHHHHHHHHHHhC
Confidence 466667777755442211 2342 45675 577788888888886 356664
Q ss_pred -----CCchhhhhhcCC---CCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 020130 85 -----DTPQALEDEYGG---FLSPKIVKDFGDYADLCFKEFGDRVKHWI 125 (330)
Q Consensus 85 -----~~P~~l~~~~gg---w~~~~~~~~f~~ya~~~~~~~g~~v~~w~ 125 (330)
++|..|.-+..| ....+..+...+|++.|-+++|-++-.++
T Consensus 86 ~~~~~~lp~vlD~E~~~~~~~~~~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 86 GNNTGNLPIAIYVSYYGDYNPDTKKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred CCCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 334433222222 12234556677777777777776655444
No 181
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=32.98 E-value=1.3e+02 Score=32.14 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHH
Q 020130 62 FYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLC 113 (330)
Q Consensus 62 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 113 (330)
....+++.|+++|+..=+..+|-.++.-+..+||. +....++--.+|++.|
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 4445666666666655
No 182
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.50 E-value=47 Score=28.38 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
....++-+++++.+|++.+++...+-...+... ....-...++.++.+.+.+.++|+++.+=.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 556788899999999999999976411111110 001112346788888889999998877653
No 183
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=32.21 E-value=1.9e+02 Score=30.36 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
++|++.+++.|++.+|+..+-+.+. -....++.++++|..+.+++
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVR---------------NMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHH---------------HHHHHHHHHHHcCCEEEEEE
Confidence 4567899999999999987665541 13344555556666555554
No 184
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.03 E-value=2.3e+02 Score=25.72 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
.+++.+++++++|++.+=+.......++.. ... ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~-----~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPD-----LKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccc-----cCc---hHHHHHHHHHHHcCCeEEE
Confidence 488999999999999998844332222211 222 2345677788899998753
No 185
>PTZ00445 p36-lilke protein; Provisional
Probab=32.02 E-value=94 Score=28.23 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCCchhhhh-hcCCCCChh---------hHHHHHHHHHHHH
Q 020130 61 DFYNNLINELISNGLTPFVTLFHWDTPQALED-EYGGFLSPK---------IVKDFGDYADLCF 114 (330)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~-~~ggw~~~~---------~~~~f~~ya~~~~ 114 (330)
+--+.+++.|++.||+.+++= ||.- |.. --|||.++. ....|..+...+.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 445788999999999999862 2322 111 138998886 4455666655543
No 186
>PRK07094 biotin synthase; Provisional
Probab=31.90 E-value=75 Score=30.07 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 20 RYKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
.-+|+++.|+++|++.+-++++ - .++...-. ...+ .+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4578999999999999998884 2 24443321 1122 3568889999999999865443
No 187
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.72 E-value=1.6e+02 Score=27.24 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=51.7
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (330)
..+-++.++++|++++-+-+..+|..... .+++..++ .+-+.+.++++.......|--++.-| .. .++
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~----~~~~~~~~---~~~~~~~~~~~~~~~i~~Hapy~iNl----as-~~~ 80 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP----MLEEEVID---WFKAALETNKNLSQIVLVHAPYLINL----AS-PDE 80 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC----CCCHHHHH---HHHHHHHHcCCCCcceeccCCeeeec----CC-CCH
Confidence 46678999999999999999888876543 34554333 33344778888743334452222111 11 123
Q ss_pred ----hhHHHHHHHHHHHHHHhCCC
Q 020130 101 ----KIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 101 ----~~~~~f~~ya~~~~~~~g~~ 120 (330)
.+++.|.+-.+. ++.+|-.
T Consensus 81 ~~r~~sv~~~~~~i~~-A~~lga~ 103 (274)
T TIGR00587 81 EKEEKSLDVLDEELKR-CELLGIM 103 (274)
T ss_pred HHHHHHHHHHHHHHHH-HHHcCCC
Confidence 345556655554 5666653
No 188
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=31.62 E-value=1.6e+02 Score=28.88 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCC--CCChhhHHHHHHHHHHHH--------HHhCCCcceE-Eecc
Q 020130 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG--FLSPKIVKDFGDYADLCF--------KEFGDRVKHW-ITLN 128 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg--w~~~~~~~~f~~ya~~~~--------~~~g~~v~~w-~t~N 128 (330)
-++..+.+.+++++|+... .|.--.-|.|-- .|.+ |+-.+....+.+|++-+. +++++.+..- .++|
T Consensus 152 A~~l~~fv~~m~~nGvnly-alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 152 ADYLNDFVLEMKNNGVNLY-ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHHHHHHhCCCcee-EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhccccEEecchhccccccccccccc
Confidence 4678889999999998765 333344566542 2344 666666777788887776 5677744433 4889
Q ss_pred CCccccc
Q 020130 129 EPETVGE 135 (330)
Q Consensus 129 Ep~~~~~ 135 (330)
.|-..+.
T Consensus 230 Dp~a~a~ 236 (433)
T COG5520 230 DPKALAN 236 (433)
T ss_pred CHhHhcc
Confidence 9875544
No 189
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.34 E-value=2e+02 Score=27.41 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred cccCcccc--ccHHHHHHHHHcCCCEEEecc----cccc---ccccCCC----CCCCChHHHHHHHHHHHHHHHCCCeEE
Q 020130 12 DVADNFYF--RYKEDIALVKQVGFDSIRFSI----SWSR---ILPHGNI----SGGVNQQGVDFYNNLINELISNGLTPF 78 (330)
Q Consensus 12 ~~a~d~y~--~~~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (330)
|+|-.++. ..++=|+.|+..++|.+-+-+ +|.- -.|+-+. .|.+.. +=++++++-++++||++|
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vI 85 (311)
T cd06570 9 DVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVV 85 (311)
T ss_pred ecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEE
Confidence 44444433 245558999999999887765 5632 3344211 134555 347899999999999999
Q ss_pred EEcCCCCCchh
Q 020130 79 VTLFHWDTPQA 89 (330)
Q Consensus 79 vtL~H~~~P~~ 89 (330)
.-+ |+|-.
T Consensus 86 PEI---d~PGH 93 (311)
T cd06570 86 PEI---DVPGH 93 (311)
T ss_pred Eee---cCccc
Confidence 876 66653
No 190
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.02 E-value=98 Score=29.88 Aligned_cols=72 Identities=19% Similarity=0.231 Sum_probs=46.1
Q ss_pred cccCcc---ccccHHHHHHHHHcCCCEEEecccccccc--ccCC-----CCCCCC-----------hHHHHHHHHHHHHH
Q 020130 12 DVADNF---YFRYKEDIALVKQVGFDSIRFSISWSRIL--PHGN-----ISGGVN-----------QQGVDFYNNLINEL 70 (330)
Q Consensus 12 ~~a~d~---y~~~~eDi~l~~~lG~~~~R~si~W~ri~--P~~~-----~~g~~n-----------~~~~~~y~~~i~~l 70 (330)
+++++| .++-++=|+.+++.|.++++|..-=++-+ +... ..+.++ +-..++|.++.+.+
T Consensus 7 EiG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~ 86 (327)
T TIGR03586 7 ELSANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERA 86 (327)
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHH
Confidence 345565 34556668999999999999986211111 1100 001121 11357889999999
Q ss_pred HHCCCeEEEEcCC
Q 020130 71 ISNGLTPFVTLFH 83 (330)
Q Consensus 71 ~~~gi~p~vtL~H 83 (330)
++.||..+.|.+.
T Consensus 87 ~~~Gi~~~stpfd 99 (327)
T TIGR03586 87 KELGLTIFSSPFD 99 (327)
T ss_pred HHhCCcEEEccCC
Confidence 9999999999863
No 191
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.78 E-value=2e+02 Score=26.07 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE-cCCCCCc
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 87 (330)
.++-+++++++|.+.+++...+ . |.+......-....+..+++.+.+.++||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5666899999999999864322 2 2110001111233456677778888999997774 3565544
No 192
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=30.66 E-value=42 Score=28.73 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.9
Q ss_pred hhhhcCCCChhHHHhhcCCCCC--CCHhHHhhcCCCccEEEEecccCc
Q 020130 229 NPITYGSYPRSMQHLVGNRLPK--FTKSQAEMVKGSVDFLGLNYYTAD 274 (330)
Q Consensus 229 dp~~~G~YP~~~~~~~~~~lp~--~t~~d~~~ikg~~DFiGiNYYts~ 274 (330)
..++.|...+-+..++ |+ +.|.|...|..++|||.|.=++..
T Consensus 71 ravl~Gkv~EqlaP~l----p~F~ynP~D~RFlG~PVD~IvF~Gls~~ 114 (156)
T PF10107_consen 71 RAVLKGKVSEQLAPFL----PEFPYNPKDARFLGSPVDFIVFDGLSDG 114 (156)
T ss_pred HHHHcchhHHHhhhcc----CCCCCChhhheecCCCceEEEEcCCCCC
Confidence 3556787666555544 54 489999999999999999999763
No 193
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=30.54 E-value=71 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.486 Sum_probs=42.7
Q ss_pred ccccHHH-HHHHHHcCCCEEEec-c-cc-cccc-----------ccCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 18 YFRYKED-IALVKQVGFDSIRFS-I-SW-SRIL-----------PHGNISGGVN-QQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~s-i-~W-~ri~-----------P~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
|..+.|+ +.-+|+||.|++-+= | +- +... |.... |..+ +.-+.=.+.||++|...||++++..
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrY-gt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRY-GTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccc-cCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 8888888 999999999998742 1 22 1221 22110 2222 1113338899999999999999987
Q ss_pred CC
Q 020130 82 FH 83 (330)
Q Consensus 82 ~H 83 (330)
-|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 65
No 194
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=30.50 E-value=80 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCC
Q 020130 70 LISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR 120 (330)
Q Consensus 70 l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~ 120 (330)
+++.|++.+++. |=..|-.++ |. ..+..|-++++.++-+++|.
T Consensus 114 ~~~~g~~v~vN~---DGlEWkR~K---W~--~~~k~~lk~~E~~avk~ad~ 156 (185)
T PF09314_consen 114 LRKKGGKVVVNM---DGLEWKRAK---WG--RPAKKYLKFSEKLAVKYADR 156 (185)
T ss_pred hhhcCCcEEECC---Ccchhhhhh---cC--HHHHHHHHHHHHHHHHhCCE
Confidence 334444444443 345555544 32 24788999999999999986
No 195
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=29.92 E-value=2.6e+02 Score=25.98 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEec
Q 020130 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITL 127 (330)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~ 127 (330)
+|.+|+++ ++++++.+.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++..+.-.
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 48999866 6699999999999999886431 111 11235566677777777777777755443
No 196
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.84 E-value=1.9e+02 Score=27.80 Aligned_cols=74 Identities=20% Similarity=0.374 Sum_probs=47.6
Q ss_pred CcccCcccc--ccHHHHHHHHHcCCCEEEeccc----c-------ccccccCC-------CCCCCChHHHHHHHHHHHHH
Q 020130 11 GDVADNFYF--RYKEDIALVKQVGFDSIRFSIS----W-------SRILPHGN-------ISGGVNQQGVDFYNNLINEL 70 (330)
Q Consensus 11 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~~-------~~g~~n~~~~~~y~~~i~~l 70 (330)
-|+|-.++. ..++-|+.|+..++|.+-+-++ | +++-..+. ..|.+-. +=++++++-+
T Consensus 8 lD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA 84 (329)
T cd06568 8 LDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYA 84 (329)
T ss_pred eeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHH
Confidence 355555443 3566789999999998876663 3 33322110 0123444 3478999999
Q ss_pred HHCCCeEEEEcCCCCCchhh
Q 020130 71 ISNGLTPFVTLFHWDTPQAL 90 (330)
Q Consensus 71 ~~~gi~p~vtL~H~~~P~~l 90 (330)
+++||++|.-+ |+|-..
T Consensus 85 ~~rgI~vIPEi---D~PGH~ 101 (329)
T cd06568 85 AERHITVVPEI---DMPGHT 101 (329)
T ss_pred HHcCCEEEEec---CCcHHH
Confidence 99999999876 677543
No 197
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=29.78 E-value=2.5e+02 Score=25.94 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEE
Q 020130 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWI 125 (330)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~ 125 (330)
+|.+|+++ +++.|+.|.+.|+..++.+-+- |-+ ..-+.+...+..+.+.+.-++++....
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~ 74 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVIA 74 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 48899876 6699999999999999876431 111 122456677777777777777766443
No 198
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.74 E-value=36 Score=19.98 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCCeE
Q 020130 63 YNNLINELISNGLTP 77 (330)
Q Consensus 63 y~~~i~~l~~~gi~p 77 (330)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457888888999987
No 199
>PRK10426 alpha-glucosidase; Provisional
Probab=29.61 E-value=4.2e+02 Score=28.00 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=62.3
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCC-----CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---CCchhh
Q 020130 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNIS-----GGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQAL 90 (330)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~-----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l 90 (330)
..+-++.+++.|+. ++=+. .|+......... -.+|.+-.---+++|++|++.|++.++.+.=+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 44556888888865 44344 676442211100 02344333335789999999999988776532 223321
Q ss_pred hhh-------------c--------C---CCCChhhHHHHHHHHHHHHHHhCCCcceE-EeccCC
Q 020130 91 EDE-------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNEP 130 (330)
Q Consensus 91 ~~~-------------~--------g---gw~~~~~~~~f~~ya~~~~~~~g~~v~~w-~t~NEp 130 (330)
+.. | + .++|++..+.|.+..+..+...| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 110 0 1 16789999999877655455555 6555 788994
No 200
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=29.44 E-value=77 Score=26.34 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=39.2
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
-+++++.|+++|+..+.+|++-..-.-.... . -....++.+-+.|+.+.++|+...+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKI-R-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHH-h-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 4789999999999999999954322211100 0 011224567788889999888877665
No 201
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.98 E-value=47 Score=33.29 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCe-EEEEcCCCCCc
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTP 87 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P 87 (330)
.-+|.+++|+++|++.+-+++ +=+ ++.-.-. ...+ .+...+.++.|++.|++ +-++|. +++|
T Consensus 149 l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~--r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 149 ITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN--RIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC--CCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 347889999999999666665 222 1221110 2223 35577999999999996 434442 3444
No 202
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.94 E-value=4.3e+02 Score=23.91 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 020130 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
-++|-++.++++|++.+=+++.=.+..+.. ..++. +....+-+.|.++||+...
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLAR---LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccccccc---ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 468899999999999999876411111111 22343 2356788889999999764
No 203
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.67 E-value=1e+02 Score=28.17 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHcCCCEEEeccccccc-cccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 19 FRYKEDIALVKQVGFDSIRFSISWSRI-LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri-~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
.+.+.-++.++.||++.+|+. ..... .+.. ...-...++..+.+.+.+.++||+..+=.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS---EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Cccccccccc---HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 345666899999999999974 11111 1111 111134466788889999999998887543
No 204
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=28.30 E-value=70 Score=28.99 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=44.3
Q ss_pred ccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCch
Q 020130 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (330)
Q Consensus 13 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (330)
+|.|..+. ++.+++++++|....-+-+-+.-+.-.| .++|+.|++.|...+++++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~G--------------~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAGG--------------PQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhcC--------------HHHHHHHHhcCCCEEEEeehhhccc
Confidence 46666664 7899999999866544555554443211 2668889988999999999999984
No 205
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=28.28 E-value=5.4e+02 Score=24.72 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=79.0
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCch----------hhhhhcC-----CCCC---hhhHHHHHHHHHHHH
Q 020130 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ----------ALEDEYG-----GFLS---PKIVKDFGDYADLCF 114 (330)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~----------~l~~~~g-----gw~~---~~~~~~f~~ya~~~~ 114 (330)
+..+.+.+..++++.+.++++|-..++=|+|...-. ....... ..+. .++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999954310 0000000 0111 256888888666654
Q ss_pred HHhC-CCcceEEeccCCccccccccccCcc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 020130 115 KEFG-DRVKHWITLNEPETVGECGYAKGTK-APGRCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQASQNG 192 (330)
Q Consensus 115 ~~~g-~~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~g 192 (330)
+ -| |-|. +.+-.||+...| .|.. +. .++-. |.| +-|-+.=-...++.+|+.. +.
T Consensus 153 ~-aGfDgVe---------ih~ahGyLl~qFlSp~~-N~-RtD~y-GGs-------lenR~Rf~~eii~~ir~~~----~~ 208 (337)
T PRK13523 153 E-AGFDVIE---------IHGAHGYLINEFLSPLS-NK-RTDEY-GGS-------PENRYRFLREIIDAVKEVW----DG 208 (337)
T ss_pred H-cCCCEEE---------EccccchHHHHhcCCcc-CC-cCCCC-CCC-------HHHHHHHHHHHHHHHHHhc----CC
Confidence 4 33 3332 345668887654 3421 10 00111 222 2233333445666667653 35
Q ss_pred cEEEEecCCccccCCCCHHHH-HHHHH
Q 020130 193 LIGITVSSIWAVPKFPTVASE-KAAYR 218 (330)
Q Consensus 193 kIGi~~~~~~~~P~~~~~~D~-~aa~~ 218 (330)
.||+-++..-+.+-..+++|. +.++.
T Consensus 209 ~v~vRis~~d~~~~G~~~~e~~~i~~~ 235 (337)
T PRK13523 209 PLFVRISASDYHPGGLTVQDYVQYAKW 235 (337)
T ss_pred CeEEEecccccCCCCCCHHHHHHHHHH
Confidence 788888765444433345543 44443
No 206
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=28.13 E-value=2.9e+02 Score=26.01 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=61.1
Q ss_pred CcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhh
Q 020130 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (330)
Q Consensus 11 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l 90 (330)
|-++...++.-.+--+-.|+.|.+.+|-+.-=+|--|-.. -...++||++..+. ..+.|+-.+.-+
T Consensus 51 GPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsF--QGlge~gL~~l~~a---~~~~Gl~vvtEv--------- 116 (286)
T COG2876 51 GPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSF--QGLGEEGLKLLKRA---ADETGLPVVTEV--------- 116 (286)
T ss_pred cCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccc--cccCHHHHHHHHHH---HHHcCCeeEEEe---------
Confidence 4456778888888999999999999999998888877654 44677777765543 445666444322
Q ss_pred hhhcCCCCChhhHHHHHHHHHHH
Q 020130 91 EDEYGGFLSPKIVKDFGDYADLC 113 (330)
Q Consensus 91 ~~~~ggw~~~~~~~~f~~ya~~~ 113 (330)
.+++.++.+.+|++.+
T Consensus 117 -------m~~~~~e~~~~y~Dil 132 (286)
T COG2876 117 -------MDVRDVEAAAEYADIL 132 (286)
T ss_pred -------cCHHHHHHHHhhhhHH
Confidence 4677789999998875
No 207
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=28.10 E-value=72 Score=27.05 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=38.8
Q ss_pred ccCccccccHHHHH-HHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 020130 13 VADNFYFRYKEDIA-LVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (330)
Q Consensus 13 ~a~d~y~~~~eDi~-l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (330)
.+|......++|+. .++++|+..+++.+.|+---- + ..+.++| -..|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt--~--d~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWT--T--DWITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCC--h--HHCCHHH-------HHHHHhcCccCC
Confidence 35666777888874 467789999999887765433 2 4466655 457899999883
No 208
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.53 E-value=1.5e+02 Score=25.87 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.7
Q ss_pred CcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 11 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
..+|.|.+..-...+..+..+.++.++++.++-+-.... .......+.+++.++..|++++++
T Consensus 147 ~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 147 VRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD-------PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC-------hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 356667666666778888888899999888776544322 223457889999999999999976
No 209
>PRK06256 biotin synthase; Validated
Probab=27.41 E-value=1.1e+02 Score=29.07 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
.-+|.++.|+++|++.+-+++ +=.++++.-. ..- ..+...+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~--~~~---t~~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVV--TTH---TYEDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcC--CCC---CHHHHHHHHHHHHHcCCeeccC
Confidence 457889999999999998876 3223333321 111 2456778999999999986544
No 210
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=26.81 E-value=1.7e+02 Score=28.34 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=46.8
Q ss_pred CcccCcccc--ccHHHHHHHHHcCCCEEEeccccc---ccc----ccCCCC------CCCChHHHHHHHHHHHHHHHCCC
Q 020130 11 GDVADNFYF--RYKEDIALVKQVGFDSIRFSISWS---RIL----PHGNIS------GGVNQQGVDFYNNLINELISNGL 75 (330)
Q Consensus 11 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~W~---ri~----P~~~~~------g~~n~~~~~~y~~~i~~l~~~gi 75 (330)
-|+|-.++. ..++-|+.|+..++|.+-+=++=. ||+ |+-+.. |.+.. +=++++|+-++++||
T Consensus 8 lDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI 84 (348)
T cd06562 8 LDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGI 84 (348)
T ss_pred eeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCC
Confidence 355554443 245568999999999887655321 232 221111 23444 348899999999999
Q ss_pred eEEEEcCCCCCchh
Q 020130 76 TPFVTLFHWDTPQA 89 (330)
Q Consensus 76 ~p~vtL~H~~~P~~ 89 (330)
++|.-+ |+|-.
T Consensus 85 ~vIPEI---D~PGH 95 (348)
T cd06562 85 RVIPEI---DTPGH 95 (348)
T ss_pred EEEEec---cCchh
Confidence 999876 67654
No 211
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.80 E-value=2.4e+02 Score=27.53 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=50.1
Q ss_pred CccccccHHHHHHHHHcCCC-------EEE-------eccccccccccCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEE
Q 020130 15 DNFYFRYKEDIALVKQVGFD-------SIR-------FSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~-------~~R-------~si~W~ri~P~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
+...+.-.|=.+.+|++|-+ ..| .+..|.-+.-++..+|.+| ++|+..-++++-++.+.|+...-
T Consensus 64 I~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~at 143 (353)
T PRK12755 64 IHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLAT 143 (353)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33344444445666666654 555 7788888875555558887 89999999998889999986664
Q ss_pred EcCCCCCchhh
Q 020130 80 TLFHWDTPQAL 90 (330)
Q Consensus 80 tL~H~~~P~~l 90 (330)
-+..-..|+.+
T Consensus 144 E~ld~~~~~y~ 154 (353)
T PRK12755 144 EALDPISPQYL 154 (353)
T ss_pred EecCcccHHHH
Confidence 44333334333
No 212
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.78 E-value=3.5e+02 Score=26.30 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=58.7
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCC-CCCCCChHHHHHHHHHHHHHHHCCCe-EEEEcCCCCCchhhhhhcCCCC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~ 98 (330)
-++.++.|+++|++.+.+++ .-+-++-- .-|+.. ..+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 46889999999999655555 33322210 002221 123466789999999997 455653 45552
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCccc
Q 020130 99 SPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETV 133 (330)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~ 133 (330)
++.+.|.+-.+.+.+ ++ +.|..+...=||...
T Consensus 167 --qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCCh
Confidence 345666666666554 44 678888887888753
No 213
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.58 E-value=87 Score=28.83 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEeccccccc-cccCC-------CC--CCCCh--------HHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 25 IALVKQVGFDSIRFSISWSRI-LPHGN-------IS--GGVNQ--------QGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri-~P~~~-------~~--g~~n~--------~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
|+.+++.|++++.|..--..- ..... .. +.-+. =..+++.++.+.++++||..+.|.+.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd 78 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFD 78 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCC
Confidence 678999999999998743322 11110 00 00010 12578999999999999999999863
No 214
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=26.58 E-value=3.6e+02 Score=25.96 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=54.2
Q ss_pred cHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchhhhhhcCCC
Q 020130 21 YKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw 97 (330)
-+|.+++|+++|++.+-+++ +-+ .+...- |+... .+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 97 ~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~--~~~~~~ai~~lr~~g~~~v~iDli-~GlPg--------- 161 (350)
T PRK08446 97 TKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHS--QKQIIKAIENAKKAGFENISIDLI-YDTPL--------- 161 (350)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCC--HHHHHHHHHHHHHcCCCEEEEEee-cCCCC---------
Confidence 36889999999999777776 443 222221 33221 3457789999999999855 5553 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CCcceEEeccCCc
Q 020130 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPE 131 (330)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~ 131 (330)
++.+.|.+-.+.+.+ .+ +.|..+...=||.
T Consensus 162 ---qt~~~~~~~l~~~~~-l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 ---DNKKLLKEELKLAKE-LPINHLSAYSLTIEEN 192 (350)
T ss_pred ---CCHHHHHHHHHHHHh-cCCCEEEeccceecCC
Confidence 234455555555433 33 3455544444444
No 215
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=26.52 E-value=2.1e+02 Score=26.03 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCC---ChhhHHHHHHHHHHHHHHhCCCcc
Q 020130 62 FYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL---SPKIVKDFGDYADLCFKEFGDRVK 122 (330)
Q Consensus 62 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~---~~~~~~~f~~ya~~~~~~~g~~v~ 122 (330)
..++++++++++|++-+.-.-|..+|..... ..|. +.+..+.|.+-++.+-++|+++++
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~ 77 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLK 77 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCe
Confidence 3668999999999999999999775432211 1121 123344445555556778887655
No 216
>PRK09389 (R)-citramalate synthase; Provisional
Probab=26.31 E-value=1.1e+02 Score=31.17 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=48.4
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
-++|++.+.+.|++.+++.++-|.+.=.... +.--++.++-..+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKL-KKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 4899999999999999999988777433211 2233567888889999999999998888764
No 217
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.04 E-value=2.4e+02 Score=26.46 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHHHcCC--CEEEecccccccc-----ccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC-CC-ch-h---
Q 020130 23 EDIALVKQVGF--DSIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DT-PQ-A--- 89 (330)
Q Consensus 23 eDi~l~~~lG~--~~~R~si~W~ri~-----P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-~~-P~-~--- 89 (330)
+=++.+++.|+ +++=+.+.|..-- .++-.+=.+|++-.--.+++|++|++.|++.++.+.=. .. +. .
T Consensus 29 ~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~ 108 (292)
T cd06595 29 ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP 108 (292)
T ss_pred HHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH
Confidence 33566666665 5677777785421 01110013444444446799999999999999876532 11 11 0
Q ss_pred -hhhhc-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc
Q 020130 90 -LEDEY-----------GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (330)
Q Consensus 90 -l~~~~-----------ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (330)
+.... ..++|++..+.|.+-....+...| -.-+|.=+|||...
T Consensus 109 ~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 109 EMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCCCCccc
Confidence 11111 125677666654333222222232 13467889999754
No 218
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.95 E-value=1.6e+02 Score=28.77 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=49.0
Q ss_pred cCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
+.+......+..+.+++.|++.+|=+.-=+|--|.+. -.+. .+.+..+.+.+++.||..+.+.++
T Consensus 127 ~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f--~g~~---~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 127 SVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDF--QGLG---VEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred cccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccc--cCCC---HHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4567778888889999999999997765566666543 1233 356778888899999999998864
No 219
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=25.78 E-value=2.3e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCC-eEEEEcCCCCCc
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGL-TPFVTLFHWDTP 87 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi-~p~vtL~H~~~P 87 (330)
.-+|.+++|+++|++.+.+++ +=+ ++.-.-. ...+ .+-..+.++.+++.|+ .+.++|. +++|
T Consensus 149 lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~--r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 149 LDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN--RIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC--CCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 457889999999999777776 222 1111110 1222 3457789999999999 4555543 4455
No 220
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.46 E-value=88 Score=28.20 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEecc-ccccc------cccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 22 KEDIALVKQVGFDSIRFSI-SWSRI------LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si-~W~ri------~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
++-+..+-+.|----.=+| +|||. .+... |.+...+.+....+|+..+++|++-+||..-
T Consensus 80 ~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~--g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~ 146 (209)
T COG3916 80 TDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAA--GGVSPAAYELFAGMIEYALARGITGIVTVTD 146 (209)
T ss_pred hhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhc--CCccHHHHHHHHHHHHHHHHcCCceEEEEEc
Confidence 3444444442222222244 78888 44443 7777889999999999999999999999864
No 221
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=25.40 E-value=2.7e+02 Score=27.74 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCc
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTP 87 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P 87 (330)
.-+|.+++|+++|++.+.+++ +=+ ++.-.- |+-. ..+-..+.|+.|++.|+..+ ++|. +++|
T Consensus 139 lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 139 TTAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 356889999999999777666 331 222221 2221 23457789999999999864 5543 4555
No 222
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.40 E-value=2.9e+02 Score=20.53 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=31.4
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..++.+|+.++|=| .. ..|.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~--------rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS--------RGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CC--------CcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67889999999999 11 224566889999998 888887775
No 223
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.03 E-value=1.4e+02 Score=28.84 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEecccccc---ccccCCCCCCCCh----HHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 25 IALVKQVGFDSIRFSISWSR---ILPHGNISGGVNQ----QGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~r---i~P~~~~~g~~n~----~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
++++|++|++.+=+.-.--. +.|+.. ..+|- -.-+...++.++|+++||++.+-+.++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~--t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKY--TDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT---SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCC--CcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 79999999998765321110 122221 12221 2347788999999999999999888765
No 224
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=24.92 E-value=2.9e+02 Score=28.38 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCC------CC-----CC----C-hHHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNI------SG-----GV----N-QQGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~------~g-----~~----n-~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
+.|++..++.|++.+|+..+.+.+.-.... .| .+ + ...+++|.++.+++.+.|+.-+ +|-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I-~Ik--- 175 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI-CIK--- 175 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE-EeC---
Confidence 347899999999999998866665110000 00 00 0 1124666666666666665433 321
Q ss_pred CchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcce-EEeccCCc
Q 020130 86 TPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKH-WITLNEPE 131 (330)
Q Consensus 86 ~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~-w~t~NEp~ 131 (330)
|- .|-..|. ...+.++.+.+++++.+.. ..+-|-..
T Consensus 176 ------Dt-aGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~G 212 (499)
T PRK12330 176 ------DM-AALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTG 212 (499)
T ss_pred ------CC-ccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCC
Confidence 21 5666654 3445566666777633333 34555544
No 225
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=24.82 E-value=1.8e+02 Score=27.91 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=42.6
Q ss_pred cccccHHHHHHHHHcCCCEEEe-ccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 17 FYFRYKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
+|.+ +|--+++++.|-....- +=-|.|+.|++.....+|. +.|..|.++|.-|+++
T Consensus 135 ~y~~-~~a~~~~~~~g~~~~~d~g~g~RrvV~SP~P~~ive~-------~aI~~LLe~G~IvI~~ 191 (313)
T PRK12454 135 FYDE-EEAKKLAKEKGWIVKEDAGRGWRRVVPSPDPLGIVEI-------EVIKALVENGFIVIAS 191 (313)
T ss_pred CcCH-HHHHHHHHHcCCEEEEcCCCceEEEeCCCCCccccCH-------HHHHHHHHCCCEEEEe
Confidence 4554 66677888889877776 4589999999853345555 6788999999999877
No 226
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=24.72 E-value=3.5e+02 Score=26.71 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=64.5
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---CCc---hh---
Q 020130 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTP---QA--- 89 (330)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~--- 89 (330)
..+-++.+++.|+- ++=+...|..-... -.+|++-..-.+++++.|+++|++.++.++-+ +-+ ..
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~----f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD----FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT----T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc----cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 45567788887765 55555566663221 34565555557899999999999988766532 222 11
Q ss_pred -----hhhhcCC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc
Q 020130 90 -----LEDEYGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (330)
Q Consensus 90 -----l~~~~gg----------------w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (330)
+...-.| |.+++..+.|.+-.+.+++.+| ---+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 1000012 7788888888777777665543 24567899999875
No 227
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=24.62 E-value=1.6e+02 Score=25.23 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHHHcC-CCEEEeccc-cccccccCCCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 22 KEDIALVKQVG-FDSIRFSIS-WSRILPHGNISGG-VNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 22 ~eDi~l~~~lG-~~~~R~si~-W~ri~P~~~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
++.++.|++.| ++.+.+|+. .+...-.-. |. -+.. +...+.|+.|+++|+++.+..
T Consensus 102 ~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~--g~~~~~~--~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 102 PRVLEELLEEGLVDYVAMDVKAPPEKYPELY--GLEKNGS--NNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred HHHHHHHHhcCCCcEEEEeccCChHHHHHHH--CCCCchH--HHHHHHHHHHHHcCCCEEEEE
Confidence 57788888888 688888885 433222111 21 1111 356678899999999877654
No 228
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.53 E-value=1.3e+02 Score=30.18 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCCCh-HHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh
Q 020130 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQ-QGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (330)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~-~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 100 (330)
+|.+++|+++|++ |+||.-.-.-|+-- ..++. ...+-..+.|+.+++.|++-+-.-.=+++| .
T Consensus 152 ~e~l~~L~~~G~~--rvsiGvQS~~~~vl--~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------------g 215 (453)
T PRK13347 152 AEMLQALAALGFN--RASFGVQDFDPQVQ--KAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------------H 215 (453)
T ss_pred HHHHHHHHHcCCC--EEEECCCCCCHHHH--HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------------C
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEeccCCc
Q 020130 101 KIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (330)
Q Consensus 101 ~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (330)
++.+.|.+-.+.+.+.=-++|..+.....|.
T Consensus 216 qt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~ 246 (453)
T PRK13347 216 QTVESFRETLDKVIALSPDRIAVFGYAHVPS 246 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccc
No 229
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=24.52 E-value=1.5e+02 Score=25.81 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=48.1
Q ss_pred CcccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 11 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
-.+|.|.+.....+++.+.++..+.++++-++.+-... |.......+.++..++..|++++++
T Consensus 146 ~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 146 VRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-------DPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-------ChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 45677888888888999999999999988766544332 2233467888999999999999976
No 230
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=24.48 E-value=2.8e+02 Score=27.76 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=57.6
Q ss_pred cHHHHHHHHHcCCCEEEecc--ccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchh--hhhhcC
Q 020130 21 YKEDIALVKQVGFDSIRFSI--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQA--LEDEYG 95 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si--~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~g 95 (330)
--+|++.+.++.--.-|+++ .|. . +|.+.++ +.++++||..- ++..-|..|+. -.=++|
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd---------~-vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~G 135 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWD---------K-ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFG 135 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCC---------c-CCHHHHH------HHHHHcCCccceeccccccCccccccccccc
Confidence 36788888888776667665 782 2 3554444 89999999998 77777777732 111236
Q ss_pred CCCChh--hHHHHHHHHHHH---HHHhCCC-cceEE
Q 020130 96 GFLSPK--IVKDFGDYADLC---FKEFGDR-VKHWI 125 (330)
Q Consensus 96 gw~~~~--~~~~f~~ya~~~---~~~~g~~-v~~w~ 125 (330)
.+.|++ +.+...+.+..| .++.|.+ |..|+
T Consensus 136 SLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 136 SLSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 677654 555556666555 6777765 44443
No 231
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=24.39 E-value=94 Score=31.81 Aligned_cols=102 Identities=21% Similarity=0.415 Sum_probs=49.2
Q ss_pred HcCCCEEEeccccccccccCC-C---CC-----CCChH--HHHHHHHHHHHHHHC--CCeEEEEcCCCCCchhhhhh--c
Q 020130 30 QVGFDSIRFSISWSRILPHGN-I---SG-----GVNQQ--GVDFYNNLINELISN--GLTPFVTLFHWDTPQALEDE--Y 94 (330)
Q Consensus 30 ~lG~~~~R~si~W~ri~P~~~-~---~g-----~~n~~--~~~~y~~~i~~l~~~--gi~p~vtL~H~~~P~~l~~~--~ 94 (330)
.+|++..|..|.=+..-.... . .+ .++.+ -.++--.+|.++++. +|+.+.+- |..|.|+-.. +
T Consensus 111 G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~ 188 (496)
T PF02055_consen 111 GIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGSM 188 (496)
T ss_dssp TT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSS
T ss_pred CceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcC
Confidence 489999998884433322110 0 01 12211 122223566665543 47777765 8999998653 1
Q ss_pred --CCCCC----hhhHHHHHHHHHHHHHHhCCC-cceE--EeccCCccc
Q 020130 95 --GGFLS----PKIVKDFGDYADLCFKEFGDR-VKHW--ITLNEPETV 133 (330)
Q Consensus 95 --ggw~~----~~~~~~f~~ya~~~~~~~g~~-v~~w--~t~NEp~~~ 133 (330)
+|.+. ++..+.||+|--..++.|... |..| .+-|||...
T Consensus 189 ~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 189 NGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp CSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred cCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 24443 345566677766667777653 6666 688999863
No 232
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=24.38 E-value=1.5e+02 Score=27.81 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCC
Q 020130 62 FYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGD 119 (330)
Q Consensus 62 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~ 119 (330)
-...-|..|+++|+++++.|--++-- .++.+++..+.|+ +.+...|+.
T Consensus 60 ~~~~dI~~cq~~G~KVlLSIGG~~~~-------~~~~s~~~a~~Fa---~~l~~~~~~ 107 (280)
T cd02877 60 QLGADIKHCQSKGKKVLLSIGGAGGS-------YSLSSDADAKDFA---DYLWNAFGG 107 (280)
T ss_pred hHHHHHHHHHHCCCEEEEEccCCCCC-------cCCCCHHHHHHHH---HHHHHHhCC
Confidence 46788999999999999998443311 1123444445454 446666654
No 233
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.11 E-value=4e+02 Score=24.41 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEe
Q 020130 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWIT 126 (330)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t 126 (330)
+|.+|+++ ++++++.|.+.|+.-++.+-+- |-+ ..-+.++..+.++.+.+.-+++++...-
T Consensus 12 dg~iD~~~---~~~~i~~l~~~Gv~gi~~~Gst----------GE~-~~ls~~Er~~l~~~~~~~~~~~~~vi~g 72 (281)
T cd00408 12 DGEVDLDA---LRRLVEFLIEAGVDGLVVLGTT----------GEA-PTLTDEERKEVIEAVVEAVAGRVPVIAG 72 (281)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 48899866 6799999999999998876441 111 1123566677777777777777764443
No 234
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.03 E-value=2.2e+02 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHH
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINEL 70 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l 70 (330)
.....+|+++++++|++.+=|++- ++. |.+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~d--g~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVD--GHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCC--CCcCHHH---HHHHHHHh
Confidence 455788999999999999999874 122 7899755 45666665
No 235
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.89 E-value=2.1e+02 Score=25.61 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..++|++|++.+=++=|=.| +.+. | -.+-+..++++||+|+++.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 47899999998888877666 3322 1 3577889999999999998
No 236
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.84 E-value=3.6e+02 Score=26.25 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EEcCCCCCchhhhhhcCC
Q 020130 20 RYKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGG 96 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg 96 (330)
.-++.++.|+++|++.+-++| +-+ ++.-.- |+.. ..+-..+.|+.+++.|+.++ ++|. +++|.
T Consensus 105 l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l---~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg-------- 170 (378)
T PRK05660 105 VEADRFVGYQRAGVNRISIGVQSFSEEKLKRL---GRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD-------- 170 (378)
T ss_pred CCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 346899999999999777766 322 222221 2221 23446678999999999875 5553 45552
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCc
Q 020130 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (330)
++.+.|.+-.+.+.+-==+.+..+...=||.
T Consensus 171 ----qt~~~~~~~l~~~~~l~p~~is~y~l~~~~g 201 (378)
T PRK05660 171 ----QSLEEALDDLRQAIALNPPHLSWYQLTIEPN 201 (378)
T ss_pred ----CCHHHHHHHHHHHHhcCCCeEEeeccEeccC
Confidence 2344555555554442225677776666665
No 237
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.53 E-value=87 Score=31.92 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=37.8
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCC-CCCCCChHHHHHHHHHHHHHHHCCC-eEEEEcCCCCCc
Q 020130 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGL-TPFVTLFHWDTP 87 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi-~p~vtL~H~~~P 87 (330)
-+|-++.|+++|++ |+||.-...-++-- .-|+.. .++-..+.++.+++.|+ .+-++|. +++|
T Consensus 268 t~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~h--t~e~v~~ai~~ar~~Gf~~In~DLI-~GLP 331 (488)
T PRK08207 268 TEEKLEVLKKYGVD--RISINPQTMNDETLKAIGRHH--TVEDIIEKFHLAREMGFDNINMDLI-IGLP 331 (488)
T ss_pred CHHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhCCCCeEEEEEE-eCCC
Confidence 36779999999999 55554333322110 002221 24557789999999999 4545653 4555
No 238
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=23.52 E-value=1e+02 Score=26.84 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=44.3
Q ss_pred cccCccccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 12 DVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 12 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
.++.|.+..-..+++.+..+.++.++++.++.+- -. +.......+.+++.+++.|++++++
T Consensus 149 ~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~-------~~-~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 149 RIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRD-------LS-DEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTT-------TT-SHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred eeEeeeccCCcchhhhhhhcccccceeecccccc-------cc-hhhHHHHHHHHHHHhhcccccccee
Confidence 3445555444567788888888888888877632 22 5566778889999999999999986
No 239
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=23.37 E-value=2.1e+02 Score=32.37 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEc
Q 020130 60 VDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL 81 (330)
++=+++||++|.++||++|+.+
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 4558999999999999999974
No 240
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.31 E-value=1.7e+02 Score=28.63 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHcCCCE-------E-------EeccccccccccCCCCCCCC-hHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 20 RYKEDIALVKQVGFDS-------I-------RFSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 20 ~~~eDi~l~~~lG~~~-------~-------R~si~W~ri~P~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
.-.|=.+.+|+++.+. . |.+..|.-+.-++..+|..| .+|+...++++..+.+.|+-..--+.
T Consensus 68 ~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~GlPvatE~l 145 (356)
T PRK12822 68 AALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLGLATATEFL 145 (356)
T ss_pred HHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEeec
Confidence 3334445666666652 3 66777777765554457787 79999999999999999986654443
No 241
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.27 E-value=1.1e+02 Score=29.68 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhc
Q 020130 55 VNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (330)
Q Consensus 55 ~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (330)
.|++-+-+++.+|.+|.++|.+++||.-.++.=.-|-+.|
T Consensus 8 ~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y 47 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY 47 (335)
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc
Confidence 3566788999999999999999999998877644455543
No 242
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=23.21 E-value=1.3e+02 Score=28.18 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
+.+.+|+.|-+++.|=+-|.-=+| .+|+.-+++.+++..+|.+.+|--++-+..+|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~------e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDED------EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCch------HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 358899999999999998864433 48999999999999999999999888876655
No 243
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.07 E-value=3.3e+02 Score=25.98 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=40.6
Q ss_pred ccCccccccHHHHHHHHHcCCCEEEecccccc--ccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSR--ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 13 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~r--i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
+.++....-++-++.+++.|++.+++||.=.. +.-.-. |. ....+..-+.|+.|++.|+.+.|..
T Consensus 86 l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~r--g~--~g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 86 LITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIA--GY--KNAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred EEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhc--CC--ccHHHHHHHHHHHHHhCCCceEEEE
Confidence 34555555577889999999999999984211 111100 21 1134455667788999999866543
No 244
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=22.93 E-value=3.7e+02 Score=23.22 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=38.3
Q ss_pred HHHHHcCCCEEEeccc---cccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 020130 26 ALVKQVGFDSIRFSIS---WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~---W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (330)
++.+++|++.+.+.+. ++.+.-... ..........|..+.+.+++.|+..++|=+|.|
T Consensus 46 ~~a~~lgi~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 46 RLAKEIGIRHEVIETDELDDPEFAKNPP--DRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHHcCCcEEEEeCCccccHHHhcCCC--CccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4457899999988876 322221111 122233345688888899999999999987754
No 245
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.77 E-value=1.4e+02 Score=27.44 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHH----HHHHHHHHHHHHHCCCeEEEEc
Q 020130 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQG----VDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~----~~~y~~~i~~l~~~gi~p~vtL 81 (330)
..+.+.-++++++||.+.+++.- .-.+. +.-+.+. ++..+.+.+.+.++||...+=.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~---~~~~~----~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAG---YDVYY----EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC---ccccc----cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 34566778999999999999741 11111 1122333 4566788888899999777654
No 246
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.75 E-value=2.2e+02 Score=24.05 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (330)
++.++++|++.+=+........... ....+++.+.++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~----------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK----------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH----------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc----------hHHHHHHHHHHHHcCCeEEE
Confidence 5789999999988877554432210 35678999999999999554
No 247
>PF08059 SEP: SEP domain; InterPro: IPR012989 The SEP (after shp1, eyc and p47) domain is an eukaryotic domain, which occurs frequently and mainly in single units. Almost all proteins containing a SEP domain are succeeded closely by a UBX domain (see PDOC50033 from PROSITEDOC). The function of the SEP domain is as yet unknown but it has been proposed to act as a reversible competitive inhibitor of the lysosomal cysteine protease cathepsin L [, ]. The sructure of the SEP domain comprises a beta-sheet composed of four strands, and two alpha-helices. One side of the beta-sheet faces alpha1 and alpha2. The longer helix alpha1 packs against the four- stranded beta-sheet, where as the shorter helix alpha2 is located at one edge of the globular structure formed by alpha1 and the four stranded beta sheet. A number of highly conserved hydrophobic residues are present in the SEP domain, which are predominantly buried and form the hydrophobic core [, ]. Some proteins known to contain a SEP domain are listed below: - Eukaryotic NSFL1 cofactor p37 (or p97 cofactor p37), an adapter protein required for Golgi and endoplasmic reticulum biogenesis. It is involved in Golgi and endoplasmic reticulum maintenance during interphase and in their reassembly at the end of mitosis. - Eukaryotic NSFL1 cofactor p47 (or p97 cofactor p47), a major adaptor molecule of the cytosolic AAA-type ATPase (ATPases associated with various cellular activities) p97. p47 is required for the p97-regulated membrane reassembly of the endoplasmic reticulum (ER), the nuclear envelope and the Golgi apparatus. - Vertebrate UBX domain-containing protein 4 (UBXD4). - Plant UBA and UBX domain-containing protein. - Saccharomyces cerevisiae (Baker's yeast) UBX domain-containing protein 1 or Suppressor of high-copy PP1 protein (shp1), the homologue of p47. - Drosophila melanogaster (Fruit fly) eyes closed (eyc). ; PDB: 1S3S_G 1VAZ_A 1SS6_A.
Probab=22.45 E-value=50 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=25.0
Q ss_pred EEEecCCccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHh
Q 020130 195 GITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHL 243 (330)
Q Consensus 195 Gi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~ 243 (330)
|++++-.++.|+++ | .|.-||+-+..|.+|.++...
T Consensus 7 Gf~VddGplR~y~d-p------------~n~~Fl~~I~~G~~P~EL~~~ 42 (75)
T PF08059_consen 7 GFTVDDGPLRPYDD-P------------ENAQFLEDINRGYFPSELQQR 42 (75)
T ss_dssp EEEETTS-EEETTS-T------------TCHHHHHHHHHT--SCHHHCT
T ss_pred ceEecCCCcccCCC-H------------hHHHHHHHHHhcCCCHHHHhc
Confidence 88999999999874 2 244577888899999987654
No 248
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=22.21 E-value=69 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcceEEeccCCcc
Q 020130 108 DYADLCFKEFGDRVKHWITLNEPET 132 (330)
Q Consensus 108 ~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (330)
.+.+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 249
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=22.19 E-value=1.6e+02 Score=31.25 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCCh----h-hHHHHHHHHHHHHHHhCCCcceEEeccCCc
Q 020130 65 NLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP----K-IVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (330)
Q Consensus 65 ~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~----~-~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (330)
.++.++|+++=..-+....|..|.|+. +||..+ + ++....++..-+.+.+|=.++|--++||=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 688999998877777777899999997 454332 2 233335556666788888888888899954
No 250
>PRK12354 carbamate kinase; Reviewed
Probab=22.18 E-value=1.9e+02 Score=27.75 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=41.2
Q ss_pred cccccHHHHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEE
Q 020130 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (330)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (330)
+|.+ +|--+++++-|.....-+=-|.||.|++.....++. +.|+.|.++|+-|+++
T Consensus 126 ~y~~-~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P~~ive~-------~~I~~Ll~~g~ivIa~ 181 (307)
T PRK12354 126 VYDE-AEAERLAAEKGWTIKPDGDYFRRVVPSPRPKRIVEI-------RPIRWLLEKGHLVICA 181 (307)
T ss_pred ccCH-HHHHHHHHhcCCEEeecCCceEEEecCCCCcceeCH-------HHHHHHHHCCCEEEEe
Confidence 4544 777788899999766666689999998742223443 7899999999987664
No 251
>PRK14567 triosephosphate isomerase; Provisional
Probab=22.17 E-value=2.4e+02 Score=26.16 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC
Q 020130 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (330)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (330)
..++|++|++.+=++=|=.|..= ++-| +.-.+-+..++++||+|++++=
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLF-----AESD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEECcccccCcc-----CCCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 47889999988877775444321 2222 3566778899999999999983
No 252
>PHA02769 hypothetical protein; Provisional
Probab=22.05 E-value=1.4e+02 Score=24.36 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCC
Q 020130 59 GVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (330)
Q Consensus 59 ~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw 97 (330)
-+.|...+-+.+++-|+++++||-.=|....|..+ .||
T Consensus 97 lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~k-agf 134 (154)
T PHA02769 97 LVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKK-AGF 134 (154)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhh-hhh
Confidence 35688888899999999999999765555555554 444
No 253
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.96 E-value=2.5e+02 Score=27.21 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=45.5
Q ss_pred CcccCcccc--ccHHHHHHHHHcCCCEEEeccc----c-------ccccccCCC------------------CCCCChHH
Q 020130 11 GDVADNFYF--RYKEDIALVKQVGFDSIRFSIS----W-------SRILPHGNI------------------SGGVNQQG 59 (330)
Q Consensus 11 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~~~------------------~g~~n~~~ 59 (330)
-|+|-.++. ..++-|+.|+..++|.+.+-++ | +.+-..|.. .|.+-.
T Consensus 8 LD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~-- 85 (357)
T cd06563 8 LDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ-- 85 (357)
T ss_pred eeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH--
Confidence 455555443 2455689999999998876652 2 222111100 022333
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCchh
Q 020130 60 VDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (330)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (330)
+=++++++-++++||++|.-+ |+|-.
T Consensus 86 -~di~eiv~yA~~rgI~VIPEI---D~PGH 111 (357)
T cd06563 86 -EEIREIVAYAAERGITVIPEI---DMPGH 111 (357)
T ss_pred -HHHHHHHHHHHHcCCEEEEec---CCchh
Confidence 458899999999999999775 56643
No 254
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=21.93 E-value=2.5e+02 Score=25.45 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcC---CCCC--chhhhhh--cCC
Q 020130 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDT--PQALEDE--YGG 96 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~--P~~l~~~--~gg 96 (330)
|.-++|.+-=|-+++.|+-+.++-.. |.--...+++|++++.-.++.+.-.+||-. ||++ |..+..- .=|
T Consensus 119 dHVLAKlAa~n~VAIe~~L~plL~~~---G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iG 195 (216)
T PRK03892 119 DHVLARMAAKRGVAIGFSLSPLLRAN---PYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIG 195 (216)
T ss_pred cHHHHHHHHHcCeEEEEecHHHHhhC---chhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhC
Confidence 45666777777889999999998765 667778899999999999999999988843 5665 5443321 135
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 020130 97 FLSPKIVKDFGDYADLCFKE 116 (330)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~ 116 (330)
...++..+.+..|.+.+.+|
T Consensus 196 me~~ea~~~Ls~~p~~i~~~ 215 (216)
T PRK03892 196 MEIPQAKASLSFYPRIILKR 215 (216)
T ss_pred CCHHHHHHHHHHhHHHHhhc
Confidence 66667777777777776654
No 255
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.67 E-value=7.2e+02 Score=23.84 Aligned_cols=142 Identities=17% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCC---------chhhhhhcC-----CCCC---hhhHHHHHHHHHHHHH
Q 020130 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---------PQALEDEYG-----GFLS---PKIVKDFGDYADLCFK 115 (330)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---------P~~l~~~~g-----gw~~---~~~~~~f~~ya~~~~~ 115 (330)
+..+++.+..++++++.+.++|-+.++=|.|... |........ ..+. .++++.|++=|+.+.+
T Consensus 69 ~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~ 148 (353)
T cd02930 69 VLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999543 111100000 0111 3467777776665444
Q ss_pred HhCCCcceEEeccCCccccccccccCccC-CC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 020130 116 EFGDRVKHWITLNEPETVGECGYAKGTKA-PG---RCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQASQN 191 (330)
Q Consensus 116 ~~g~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg---~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~av~~~r~~~~~~~~ 191 (330)
.=-|-|+ +..-.||+...|- |. +++. .|.| +-|-+.--...++.+|+... .+
T Consensus 149 aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~------yGGs-------lenR~r~~~eiv~aIR~~vG--~d 204 (353)
T cd02930 149 AGYDGVE---------IMGSEGYLINQFLAPRTNKRTDE------WGGS-------FENRMRFPVEIVRAVRAAVG--ED 204 (353)
T ss_pred cCCCEEE---------EecccchHHHHhcCCccCCCcCc------cCCC-------HHHHhHHHHHHHHHHHHHcC--CC
Confidence 3113343 3455678876543 32 1221 1222 22333334566777777653 35
Q ss_pred ccEEEEecCCccccCCCCHHH-HHHHHH
Q 020130 192 GLIGITVSSIWAVPKFPTVAS-EKAAYR 218 (330)
Q Consensus 192 gkIGi~~~~~~~~P~~~~~~D-~~aa~~ 218 (330)
..||+-++..-+.+-..++++ +..+++
T Consensus 205 ~~v~iRi~~~D~~~~g~~~~e~~~i~~~ 232 (353)
T cd02930 205 FIIIYRLSMLDLVEGGSTWEEVVALAKA 232 (353)
T ss_pred ceEEEEecccccCCCCCCHHHHHHHHHH
Confidence 678888775433322223443 344444
No 256
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=21.66 E-value=4.3e+02 Score=22.95 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCE--EEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 23 EDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 23 eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
.|...+|+.|++. +|.+ +|. +..|+ .+..-++.++++||. +..+||-.|
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~--~~~D~----~~~~n~~~A~~aGl~--vG~Yhf~~~ 66 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGT--TYRNP----YAASQIANAKAAGLK--VSAYHYAHY 66 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCC--CccCh----HHHHHHHHHHHCCCe--eEEEEEEec
Confidence 4788999999983 4442 443 56775 578899999999994 688998765
No 257
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=21.64 E-value=8.4e+02 Score=24.57 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=46.1
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHH----HHHHCCCeE-EEEcCCCCCchhhhhhcCCCC
Q 020130 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLIN----ELISNGLTP-FVTLFHWDTPQALEDEYGGFL 98 (330)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~----~l~~~gi~p-~vtL~H~~~P~~l~~~~ggw~ 98 (330)
-++.|.+||+..|-| -=..|.|++ ....+ ..+..+++++ .+.+.||++ ++|..-|..|.... |+++
T Consensus 83 aFef~~kLg~~~~~F--HD~D~~peg---~~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~T 153 (434)
T TIGR02630 83 AFEFFEKLGVPYYCF--HDRDIAPEG---ASLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAAT 153 (434)
T ss_pred HHHHHHHhCCCeecc--CccccCCCC---CCHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCC
Confidence 356799999988754 456788887 22322 2233344444 456789985 56777899998753 8899
Q ss_pred Chh
Q 020130 99 SPK 101 (330)
Q Consensus 99 ~~~ 101 (330)
|++
T Consensus 154 nPd 156 (434)
T TIGR02630 154 SPD 156 (434)
T ss_pred CCC
Confidence 875
No 258
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.59 E-value=4.4e+02 Score=24.42 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEec
Q 020130 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITL 127 (330)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~ 127 (330)
+|.+|.++ ++++++.|.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++....-.
T Consensus 16 dg~iD~~~---l~~~i~~l~~~Gv~gi~~~Gs~----------GE~-~~ls~~Er~~~~~~~~~~~~~~~~vi~gv 77 (292)
T PRK03170 16 DGSVDFAA---LRKLVDYLIANGTDGLVVVGTT----------GES-PTLTHEEHEELIRAVVEAVNGRVPVIAGT 77 (292)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCcC----------Ccc-ccCCHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 48899876 6699999999999999876431 111 11234555666666666667777655433
No 259
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.45 E-value=3.4e+02 Score=25.67 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 020130 62 FYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (330)
Q Consensus 62 ~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 118 (330)
-..+.|..|+++|+++++++--++-. ....+++..+.|++....+++.||
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 45678889999999999998543311 012345566777777766677776
No 260
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=21.11 E-value=4.9e+02 Score=24.53 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=34.7
Q ss_pred cHHHHHHHHHcCCCEEEecc-cccc-ccccCCCCCCCChHHHHHHHHHHHHHHHCCC-eEEE
Q 020130 21 YKEDIALVKQVGFDSIRFSI-SWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGL-TPFV 79 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi-~p~v 79 (330)
..+.++.+++.|++.+.+|+ ++.. ..-.-+ +. ..++...+.|+.+++.|+ .+.+
T Consensus 107 l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~--~~---~~~~~vl~~i~~~~~~g~~~v~i 163 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSLDSLDPERFKAIT--GR---DRLDQVLAGIDAALAAGLTPVKV 163 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC--CC---CCHHHHHHHHHHHHHCCCCcEEE
Confidence 45678899999999998888 3321 111101 22 124567788889999998 4443
No 261
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.80 E-value=1.2e+02 Score=31.44 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 020130 57 QQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (330)
Q Consensus 57 ~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (330)
.+|+.-+.+.|+.+++-|+.++|.+++|+.
T Consensus 355 ~sGl~NL~RHIenvr~FGvPvVVAINKFd~ 384 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPVVVAINKFVT 384 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 468889999999999999999999999985
No 262
>PLN02417 dihydrodipicolinate synthase
Probab=20.79 E-value=5e+02 Score=24.06 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHhCCCcceEEe
Q 020130 52 SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWIT 126 (330)
Q Consensus 52 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t 126 (330)
+|.+|+++ ++++++.+.+.|+.-++.+-+-.- +-.+ +.+...+..+.+.+.-+++++...-
T Consensus 16 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~GstGE--------~~~l---s~~Er~~~~~~~~~~~~~~~pvi~g 76 (280)
T PLN02417 16 DGRFDLEA---YDSLVNMQIENGAEGLIVGGTTGE--------GQLM---SWDEHIMLIGHTVNCFGGKIKVIGN 76 (280)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccCcc--------hhhC---CHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 48899876 779999999999999987654210 0012 2556666677777777777765443
No 263
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=20.72 E-value=2.6e+02 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEEcCC
Q 020130 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (330)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (330)
|.++.+.++|.++.++...+.+-..+|-.||
T Consensus 158 G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hh 188 (267)
T cd07396 158 GGIGEEQLQWLRNELQEADANGEKVIIFSHF 188 (267)
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 6778888999999999988777666666665
No 264
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=20.70 E-value=1.6e+02 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 56 NQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 56 n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
+++..++..++.+.|+++||...+..
T Consensus 11 ~~~~~~~a~~l~~~L~~~gi~v~~d~ 36 (94)
T PF03129_consen 11 DEEIIEYAQELANKLRKAGIRVELDD 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEES
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 66888999999999999999999886
No 265
>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]
Probab=20.54 E-value=50 Score=30.24 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=17.8
Q ss_pred CCcCCCC--cceeccc-CCceeccCCCch
Q 020130 287 FSYTTDS--RVNRTNG-FGLAFHLPEGNS 312 (330)
Q Consensus 287 ~~~~~~~--~~~~~~~-~g~~~~~P~G~~ 312 (330)
....+|. .|.+.+. +||++|+|+|+.
T Consensus 162 ~pLHGDlHH~Nild~~~rGWlvIDPkgl~ 190 (274)
T COG3570 162 RPLHGDLHHGNILDGDRRGWLVIDPKGLI 190 (274)
T ss_pred ccCcccccccccccCCcCceEEEcccccc
Confidence 3445554 3556665 699999999874
No 266
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=20.52 E-value=5.1e+02 Score=24.72 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=62.0
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCC---C--Cchhhhhh
Q 020130 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---D--TPQALEDE 93 (330)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~--~P~~l~~~ 93 (330)
..+.++.+++.|+. ++=+.+.|..-.. . =.+|++-.---+++|++|+++|++.++...-+ + .|..-+..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~--~--f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~ 101 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYMDGYR--V--FTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGL 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhhCCCC--c--eeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHH
Confidence 34556777777764 5666666764211 1 12333222224699999999999998654322 1 12221110
Q ss_pred -------------c-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEeccCCccc
Q 020130 94 -------------Y-----------GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (330)
Q Consensus 94 -------------~-----------ggw~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (330)
+ -.|+|+++.+.|.+.-+.++ ..| ---+|+=+|||..+
T Consensus 102 ~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 102 ENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred HCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCCCcccc
Confidence 0 13678888888876665544 222 13566889999865
No 267
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=20.48 E-value=3e+02 Score=23.84 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 020130 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (330)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (330)
++|++.|++.+-.--.=..+.|+++ +.++....+-.++-.+...+.+-..+|.+|+=..|
T Consensus 37 ~~L~~~G~~V~ltr~~d~~~~~~~~--~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~ 96 (189)
T TIGR02883 37 DYLQEQGALVVMTREDDSDLASEGT--KGYSRRKIEDLRKRVKLINESEADLFISIHLNAFP 96 (189)
T ss_pred HHHHhCCCEEEEEecCCcCcccccc--ccccccccCCHHHHHHHHHhcCCCEEEEEecCCCC
Confidence 6778889998866554445555443 33433322335566788888899999999874334
No 268
>PRK08508 biotin synthase; Provisional
Probab=20.47 E-value=2.2e+02 Score=26.48 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCEEEecccc-ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 21 YKEDIALVKQVGFDSIRFSISW-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
.+|.++.|++.|++++-..++= ++++|.-. ..-+ ++-.-+.++.+++.||++-.++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~--~~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKIC--TTHT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCC--CCCC---HHHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999987732 34666532 1122 2345567788999999775443
No 269
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.21 E-value=1.1e+02 Score=29.00 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcCCCEEE-eccc-c-----ccccccCCCCCCCChHHHHHHHHHHHHHHHCCCeEEEEc
Q 020130 21 YKEDIALVKQVGFDSIR-FSIS-W-----SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (330)
Q Consensus 21 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (330)
.+|.++.||++|++.+- .+.+ . .++.|.. .. .+-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t---~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LS---SDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CC---HHHHHHHHHHHHHcCCCceeeE
Confidence 37889999999999884 2321 1 1222322 23 2456799999999999998775
No 270
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform
Probab=20.07 E-value=91 Score=25.94 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=42.2
Q ss_pred CccccCCCCHHHHHHHHHHhhhhcccchhhhhcCCCChhHHHhhcC-CCCCCCHhHHhhcCCCccEEEEecccCceee
Q 020130 201 IWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN-RLPKFTKSQAEMVKGSVDFLGLNYYTADYAE 277 (330)
Q Consensus 201 ~~~~P~~~~~~D~~aa~~~~~~~~~~fldp~~~G~YP~~~~~~~~~-~lp~~t~~d~~~ikg~~DFiGiNYYts~~v~ 277 (330)
....|++++...-.......+|.|..-+..... +..+++..+++. ++--+|++ +.+.+.++|+..|.|.+....
T Consensus 16 DyI~Pa~~~~~~FR~mW~eFEWENKi~V~t~~~-dl~~yl~~i~k~tnM~~Ltp~--~~l~~~~~fl~~Nlya~S~fg 90 (129)
T PF14806_consen 16 DYIKPATCSDEEFRSMWAEFEWENKISVNTNIT-DLREYLDHIMKSTNMKCLTPE--SALSGDCGFLSANLYARSIFG 90 (129)
T ss_pred HhcCcccCCHHHHHHHHHhheeeeeEEEecCCC-CHHHHHHHHHHhcCcceeccc--cccCCCCCEEEEEEEEEeccC
Confidence 356788887655555555556666544444332 322333333332 23334543 356788999999999876643
Done!