BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020131
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q557M8|T2EA_DICDI General transcription factor IIE subunit 1 OS=Dictyostelium
discoideum GN=gtf2e1-1 PE=3 SV=1
Length = 456
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 1 MRKKLKDELECKNTVQEYICPNCQRRYNALDALRLVSLEDDSFHCENCNGELVAESDKLA 60
RKK++ K VQ Y C C + Y ALD +L++++ + CE C+GEL E + +
Sbjct: 110 FRKKMESVKVQKIDVQTYKCQTCHKVYTALDIPKLLNMDTGALACEICDGELEEELNNES 169
Query: 61 AQEGGDGDDNARRRRREKLKDLLQKLEVHLKPLMEQINRVKDLDVPEFGTLQAWEARASA 120
+ A+ + DL + L+ ++EQ+ + + ++P F AR A
Sbjct: 170 LTQ------TAKHQ-----SDLFSQ----LRKIIEQLKKTEGHNIPLF-------ARDLA 207
Query: 121 AGRAANGDSSSNDPNKSSQGYGGTPMPF-----------LGDTKVEVAFS-------GAE 162
A G S + + N SS G G P F + T + F G E
Sbjct: 208 DLSADQGPSYTINTN-SSLGMGPKPSAFPVAQGAATSHHIDPTNENIEFHVDILDTDGIE 266
Query: 163 GKQVDVKSETDSTPQKVLPPWMIKQGMNLTKEQRGEVKQESKMDGSSATGGLSDDKKSTV 222
+ VK E T LPPW++ + VK S ++ + T ++++ + V
Sbjct: 267 INKAVVKKENKKTGLASLPPWLLPSN----SFKNRNVKSNSILNNNQQTQTSTNEQPTAV 322
Query: 223 EDDKASLQDEYI 234
++ QD YI
Sbjct: 323 KEQIKIDQDFYI 334
>sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFA1 PE=1
SV=1
Length = 482
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 57/286 (19%)
Query: 3 KKLKDELECKNTVQEYICPNCQRRYNALDALRLVSLEDDSFHCENCNGELVAESDKLAAQ 62
++LKD+L+ + Y+CP C +Y L+A++L++ + F C C+ LV
Sbjct: 107 QRLKDDLDKNSEPNGYMCPICLTKYTQLEAVQLLNFDRTEFLCSLCDEPLV--------- 157
Query: 63 EGGDGDDNARRRRREKLKDLLQKLEVHLKPLMEQINRVKDLDVPEFGTLQAWEARASAAG 122
+D++ ++ +EK +D L +L ++P+++ + ++ D + E T + AR
Sbjct: 158 -----EDDSGKKNKEK-QDKLNRLMDQIQPIIDSLKKIDDSRIEE-NTFEIALARLIPPQ 210
Query: 123 RAANGDSSSNDPNKSSQGY---GGTPMPFLGDTKV---EVAFSGAEGK---QVDVKSETD 173
++ + N P K S + P+P L T + +GA + +++ + +D
Sbjct: 211 NQSHAAYTYN-PKKGSTMFRPGDSAPLPNLMGTALGNDSSRRAGANSQATLHINITTASD 269
Query: 174 STPQKVL--------------PPWMIKQGMNLTKEQRGEVKQESKMD---GSSATGGLSD 216
Q+ L P W KQ + K G + E + D +SA ++
Sbjct: 270 EVAQRELQERQAEEKRKQNAVPEWH-KQS-TIGKTALGRLDNEEEFDPVVTASAMDSINP 327
Query: 217 D------------KKSTVEDDKASLQDEYIRAYYAALLKKQQELDE 250
D + T ++ + ++ + YYAAL KKQ +L++
Sbjct: 328 DNEPAQETSYQNNRTLTEQEMEERENEKTLNDYYAALAKKQAKLNK 373
>sp|Q9P3W1|T2EA_SCHPO Transcription initiation factor IIE subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfa1 PE=1 SV=3
Length = 434
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 18 YICPNCQRRYNALDALRLVSLEDDSFHCENCNGELVAESDKLAAQEGGDGDDNARRRRRE 77
Y+CP C +++++LD L LV+ E +F C C EL D +++A +
Sbjct: 122 YVCPFCNKKFSSLDVLSLVTNE-GTFACNVCGTEL------------KDDEESAEMMSSQ 168
Query: 78 KLKDLLQKLEVHLKPLMEQINRVKDLDVPEFGTLQAWEARASAAGRAANGDSSSNDPNKS 137
K L KL + +++ + RV ++ VP+ Q+ A S N +
Sbjct: 169 K---RLGKLMGQVNGIIDALKRVDEIVVPQ-NNFQSALEHAVPVSLDTQNLSQQNLSKSN 224
Query: 138 SQGYGGTPMPFLGDTKVEVAFSGAEGKQVDVKSETDS-----TPQKVLPPWMIKQGMNLT 192
S T P + V FS K+ D K E + Q +LP W + T
Sbjct: 225 SDVRLSTSSP-----SITVDFSA--DKETDEKRERNCDKQVKAAQNILPEW------HAT 271
Query: 193 KEQRGEVKQESKMDGSSATGGLSDDKKSTVEDDKASLQDE--YIRAYYAALLKKQQE 247
G + + D A + + V+D K + E + AYYA L KQ+E
Sbjct: 272 STISGSITRAGAKDA--ALHSFRTETVNEVQDTKTDITSEKSALDAYYATLRAKQKE 326
>sp|A6UW55|TFE_META3 Transcription factor E OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=tfe PE=3 SV=2
Length = 173
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 5 LKDELECKNTVQEYICPNCQRRYNALDALRLVSLEDDSFHCENCNGEL 52
LK++LE + + CP C+ +Y+ +A+ D F C CNG L
Sbjct: 102 LKEQLEVEENTLFFYCPRCEFKYSFDEAI------DYGFRCSQCNGVL 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,686,608
Number of Sequences: 539616
Number of extensions: 5497962
Number of successful extensions: 19852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 19515
Number of HSP's gapped (non-prelim): 560
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)