BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020132
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
G T D+++ GE S+ +L+ +R G ++ E I+ + E
Sbjct: 114 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 173
Query: 89 EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
++RL + P + TGFI +T + TTL R GSD+SAA++G L A + IWT
Sbjct: 174 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 229
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
DV GVY+ DPR V A + LSY EA E++YFGA VLHPRTI P M IPI+++N F
Sbjct: 230 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 289
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
G +I D ++ DS VK +TI N+AL+N+ G GM GV GTA IF A+
Sbjct: 290 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 342
Query: 267 DVGANVIMISQASSEHSVCF 286
+ NVI+ISQ SSE ++
Sbjct: 343 EEEVNVILISQGSSETNISL 362
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
++ +++V G GM G G A IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 402 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 448
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
G T D+++ GE S+ +L+ +R G ++ E I+ + E
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174
Query: 89 EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
++RL + P + TGFI +T + TTL R GSD+SAA++G L A + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
DV GVY+ DPR V A + LSY EA E++YFGA VLHPRTI P M IPI+++N F
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
G +I D ++ DS VK +TI N+AL+N+ G GM GV GTA IF A+
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343
Query: 267 DVGANVIMISQASSEHSVCF 286
+ NVI+ISQ SSE ++
Sbjct: 344 EEEVNVILISQGSSETNISL 363
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
++ +++V G GM G G A IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 403 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 449
>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0X|B Chain B, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0W|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Aspartate And Adp (R-State)
Length = 449
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93
+ TD +V HGEL S + ++R+ + +W D R+V+ N + +PD + +
Sbjct: 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAELAA 167
Query: 94 KWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
+ ++ T GFI S TTL R GSD++AA++ L A +V IWTDV G+Y
Sbjct: 168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
+ DPR VS A + +++ EA EM+ FGA VLHP T++P +R DIP+ + + + G
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
++C N+ E + P+ + A N L+ + M G +FG A ++
Sbjct: 288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338
Query: 270 ANVIMISQAS 279
++I S+ S
Sbjct: 339 VDLITTSEVS 348
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
+ LALV + G ++ G +FG ++ N+ MI +S H++CF
Sbjct: 384 EGLALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICYGASSHNLCF 429
>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
pdb|2CDQ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
Length = 510
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQVDPDFSESEKRLE 93
D++V GE S ++ AA + G+ + D E+ + T+ + ++ + KRL
Sbjct: 141 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 200
Query: 94 KWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
+ P+ I+ TGF+ TTL R GSD +A +G L ++ +W DVDGV
Sbjct: 201 DDWMHDPAVPIV-TGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVL 259
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
+ DP A + L++ EA E++YFGA VLHP+++ P +IP+ ++N +N PG
Sbjct: 260 TCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGT 319
Query: 213 MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV 272
+I + + S + N+ ++++ T M G G +F +++G +V
Sbjct: 320 IITKT-------RDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372
Query: 273 IMISQASSEHSVCF 286
++ A+SE S+
Sbjct: 373 DVV--ATSEVSISL 384
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 22 FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
+L V + +D+ GE + +LA ++ +++D EV+ + +
Sbjct: 95 YLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGCFDE 149
Query: 82 DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
+ EK EK S N + GF S+ + T R GSD + +I+ A + A
Sbjct: 150 KKSY---EKIKEKVLS---CNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADL 203
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
WTDV G ADPR V + +SY+E E+SY GA VLH I PV IPI I
Sbjct: 204 YENWTDVSGFLXADPRIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINI 263
Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
+N S PG +I + ++I + G A N ++ +E
Sbjct: 264 KNTNKPSDPGTLIL-----SDTHKEINLGTITGIAGKKNFTVIAIE 304
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSV 284
N ALV GTG A G AN IF A+ N+ I Q SSE +V
Sbjct: 373 NXALVATVGTGXAKTKGIANKIFTALSKENVNIRXIDQGSSEINV 417
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
TTL R GSD +A + A L A I++DVDGVY+ADPR V A L LS++E E++
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
G+ +L R++ +++P+ +R+ ++ + PG +I ED + ++ + G AT
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
+ A V V G++ PG A +F A+ D N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
TTL R GSD +A + A L A I++DVDGVY+ADPR V A L LS++E E++
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
G+ +L R++ +++P+ +R+ ++ + PG +I ED + ++ + G AT
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
+ A V V G++ PG A +F A+ D N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 91 RLEKWFSQSPSNTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
RLE + ++ GF I+S TTL R GSD SA + A L+A I+TDV
Sbjct: 120 RLEHHLREG--KVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
G+ + DPR V EA ++ ++ E E++ GA VLHPR + Y IP+V+R+ ++
Sbjct: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-D 236
Query: 209 VPGIMICRPPV 219
PG + PPV
Sbjct: 237 EPGTKVVAPPV 247
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
P + E E I++ KG A I + G GM G PG A +F + DVG N+ MIS
Sbjct: 341 PEADQEAEIIVE---KGIAKI------AIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS 390
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE 281
+A V++ G+GM G PG A F A+ N+ MI A+SE
Sbjct: 527 IAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMI--ATSE 565
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 10 ELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69
+L+ E+I+S A+E+F D++ GI ++
Sbjct: 43 KLAREYIKSAREL-------GASETFCDYI-------------------GIAATRLNAML 76
Query: 70 VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS 129
++ P+++ +V DF E+E+ L K + ++ G T +D +
Sbjct: 77 LISAIPSAAKKVPVDFMEAEE-LSKLY-----RVVVMGG-----------TFPGHTTDAT 119
Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
AA++ ++A T+VDGVYSADP+ + AV LS Q+ E+
Sbjct: 120 AALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 134 GALLRAHQVTI-----WTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188
GA LRA ++ T VDGVY DP+K S+AV +L+Y E G V+
Sbjct: 148 GAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAA 204
Query: 189 IIPVMRYDIPIVIRNIFNLSVPGIMI 214
D+P+ IF +S PG+++
Sbjct: 205 FALARDSDLPL---RIFGMSEPGVLL 227
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
+D AA++ L+A + + T+VDGVY+ADP+K A ++ + +E E+
Sbjct: 122 TDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 172
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
+D AA++ L+A + + T+VDGVY+ADP+K A ++ + +E E+
Sbjct: 139 TDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 189
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
+D +A + G + A+ V T VDGV++ADP K A + L+Y E E V+
Sbjct: 145 TDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKEL---KVMD 201
Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
+ +PI +FN++ PG +
Sbjct: 202 LAAFTLARDHKLPI---RVFNMNKPGAL 226
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
+D +A + G + A+ V T VDGV++ADP K A + L+Y E E V+
Sbjct: 145 TDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKEL---KVMD 201
Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
+ +PI +FN++ PG +
Sbjct: 202 LAAFTLARDHKLPI---RVFNMNKPGAL 226
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSA----AIMGALLRAHQVT 143
S R + F +P I GF+ + ++ + +S A M LL+
Sbjct: 105 SALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAV 164
Query: 144 IWTDVDGVYSADPRKVSEAVILRTL 168
TDVDG+YS DP++ +AV+LR +
Sbjct: 165 FLTDVDGIYSKDPKRNPDAVLLRDI 189
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
+D +A + G + A V T VDGVY DP K +A + + LSY E + V+
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL---KVMD 200
Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
+ +PI +FN+ PG +
Sbjct: 201 LSAFTLARDHGMPI---RVFNMGKPGAL 225
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
+D AA++ L+A + + T+VDGVY+ADP+K A ++ +E E+
Sbjct: 121 TDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKXKPEELLEI 171
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
+D AA++ L+A + + T+VDGVY+ADP+K A ++ +E E+
Sbjct: 120 TDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKXKPEELLEI 170
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
+D +A + G + A+ V T VDGV++ADP K A L+Y E E V
Sbjct: 145 TDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATXYEQLTYSEVLEKEL---KVXD 201
Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
+ +PI +FN + PG +
Sbjct: 202 LAAFTLARDHKLPI---RVFNXNKPGAL 226
>pdb|3LL5|A Chain A, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|B Chain B, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|C Chain C, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|D Chain D, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
Length = 249
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGA----LLRAHQVT 143
S R + F +P I GF+ + ++ + +S + A LL+
Sbjct: 105 SALRYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIXADXAELLKPDVAV 164
Query: 144 IWTDVDGVYSADPRKVSEAVILRTL 168
TDVDG+YS DP++ +AV+LR +
Sbjct: 165 FLTDVDGIYSKDPKRNPDAVLLRDI 189
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW 174
+D +AA+ GA T+VDGVY+ADP+K A T+++ EA
Sbjct: 143 TDTAAALRGAEXNCDVXLKATNVDGVYTADPKKDPSATRYETITFDEAL 191
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYD-IPIVIRNI 204
T VDG+Y DP K +A L TLSY +A G + T I + + + +PIV+ N+
Sbjct: 164 TKVDGIYDKDPNKFKDAKKLDTLSYNDAL----IGDIEVMDDTAISLAKDNKLPIVVCNM 219
Query: 205 FN 206
F
Sbjct: 220 FK 221
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
VDGV+++DP+ A + R L+Y + + V+ ++ Y++P ++FN
Sbjct: 172 VDGVFTSDPKHNKSAKMYRKLNYNDVVRQNI---QVMDQAALLLARDYNLPA---HVFNF 225
Query: 208 SVPGIM--IC 215
PG+M IC
Sbjct: 226 DEPGVMRRIC 235
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQE 172
+D +AA+ A + A + + VDGVY+ADP+K + AV L++ E
Sbjct: 143 TDTTAALRAAEIEADAILXAKNGVDGVYNADPKKDANAVKFDELTHGE 190
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
+D +AA + A V + VDGV++ DPR EA +L +S++E + G V
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDR---GLRVAD 241
Query: 186 PRTIIPVMRYDIPIVIRNIFN 206
M +PI++ N+
Sbjct: 242 ATAFSLCMDNGMPILVFNLLT 262
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 137 LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE 175
L +V + TDVDGVY+ +P+K +A +L + + E
Sbjct: 171 LXPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLE 209
>pdb|2DT9|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2DT9|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2ZHO|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|C Chain C, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|D Chain D, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|E Chain E, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|F Chain F, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
Length = 167
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
++A V++ G G+A P +F AV GAN+ MI+ + SV
Sbjct: 94 DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISVII 140
>pdb|2D6F|A Chain A, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|B Chain B, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 435
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
+EGTG+ P T + G D+G V M SQ
Sbjct: 331 IEGTGLGHCPDTLIPVIGEAHDMGVPVAMTSQC 363
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANV-------LHPRTIIPVMR 194
+ + T+VDGVY DPR ++ ++ L+ Q+ ++ +V L P I V R
Sbjct: 135 LVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVER 194
Query: 195 YDIPIVIRNIFNLS 208
I +++ N L+
Sbjct: 195 SKIRVIVMNYRKLN 208
>pdb|2CB9|A Chain A, Crystal Structure Of The Thioesterase Domain Of The
Fengycin Biosynthesis Cluster
pdb|2CBG|A Chain A, Crystal Structure Of The Pmsf-Inhibited Thioesterase
Domain Of The Fengycin Biosynthesis Cluster
Length = 244
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 85 FSESEKRLEKWFSQ----SPSNTIIATGFIA--STPDNIPTTLKRDG---SDFSAAIMGA 135
F E + R+E++ S+ P + G+ A + + +++ G SDF I+ A
Sbjct: 56 FIEEDSRIEQYVSRITEIQPEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDF--IIVDA 113
Query: 136 LLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW 174
+ +T T+ D + P V E V+ + YQE W
Sbjct: 114 YKKDQSITADTENDDSAAYLPEAVRETVMQKKRCYQEYW 152
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR 166
+K +D +A+ L A ++ + TD G+Y+ADPR +A +++
Sbjct: 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIK 189
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR 166
+K +D +A+ L A ++ + TD G+Y+ADPR +A +++
Sbjct: 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIK 189
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 112 STPDNIPTTLKRDGSDFSAAIMGALLRAH--QVTIWTDVDGVYS 153
+ P+ IPT K G+ S+ ++G+ R H Q I DV+G S
Sbjct: 149 AAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYIS 192
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 112 STPDNIPTTLKRDGSDFSAAIMGALLRAH--QVTIWTDVDGVYS 153
+ P+ IPT K G+ S+ ++G+ R H Q I DV+G S
Sbjct: 150 AAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYIS 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,422,745
Number of Sequences: 62578
Number of extensions: 363820
Number of successful extensions: 813
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 50
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)