Query 020134
Match_columns 330
No_of_seqs 221 out of 1304
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 5.1E-70 1.1E-74 519.6 23.3 266 58-330 35-301 (301)
2 PLN03014 carbonic anhydrase 100.0 4.5E-64 9.7E-69 484.8 25.1 256 52-313 77-333 (347)
3 PLN03019 carbonic anhydrase 100.0 2.8E-63 6.1E-68 477.1 25.5 251 56-313 76-327 (330)
4 PLN00416 carbonate dehydratase 100.0 5.5E-59 1.2E-63 437.9 25.0 249 55-312 3-253 (258)
5 PLN02154 carbonic anhydrase 100.0 1.8E-58 4E-63 438.0 25.0 235 86-330 56-290 (290)
6 cd00884 beta_CA_cladeB Carboni 100.0 9.7E-52 2.1E-56 373.6 20.2 187 117-304 2-190 (190)
7 cd00883 beta_CA_cladeA Carboni 100.0 4.5E-51 9.8E-56 366.6 20.0 179 118-304 2-182 (182)
8 PRK10437 carbonic anhydrase; P 100.0 8.9E-51 1.9E-55 374.5 22.4 194 109-310 3-197 (220)
9 PRK15219 carbonic anhydrase; P 100.0 1.2E-49 2.5E-54 372.4 21.2 186 104-304 54-244 (245)
10 COG0288 CynT Carbonic anhydras 100.0 1.2E-48 2.7E-53 357.6 19.4 196 109-310 3-201 (207)
11 KOG1578 Predicted carbonic anh 100.0 5.8E-49 1.3E-53 367.2 13.4 251 53-330 25-276 (276)
12 cd03378 beta_CA_cladeC Carboni 100.0 5.9E-45 1.3E-49 319.6 17.5 151 104-303 2-153 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 2.2E-42 4.8E-47 299.5 17.6 151 143-301 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 6.3E-41 1.4E-45 282.2 15.1 119 139-304 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 3.2E-38 6.8E-43 273.0 11.4 142 139-304 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.0 4.2E-07 9E-12 86.4 -3.1 120 114-236 4-150 (276)
17 PF10070 DUF2309: Uncharacteri 64.9 11 0.00023 41.8 5.3 38 271-308 540-583 (788)
18 COG1254 AcyP Acylphosphatases 51.5 12 0.00026 30.5 2.3 20 287-306 30-49 (92)
19 PF04019 DUF359: Protein of un 41.6 1.2E+02 0.0026 25.9 7.0 81 134-221 5-85 (121)
20 PF07859 Abhydrolase_3: alpha/ 39.3 25 0.00053 30.8 2.5 35 184-218 50-89 (211)
21 PRK11440 putative hydrolase; P 34.9 75 0.0016 28.1 4.9 48 159-215 90-137 (188)
22 PRK14432 acylphosphatase; Prov 33.4 46 0.001 26.9 3.0 20 287-306 28-47 (93)
23 PLN02621 nicotinamidase 33.0 2.4E+02 0.0053 25.2 8.0 54 145-208 83-136 (197)
24 PF00009 GTP_EFTU: Elongation 32.6 24 0.00052 30.9 1.4 15 199-213 3-17 (188)
25 PF00857 Isochorismatase: Isoc 32.0 1.4E+02 0.003 25.5 6.0 67 140-217 64-130 (174)
26 PRK14440 acylphosphatase; Prov 30.4 58 0.0013 26.1 3.1 20 287-306 29-48 (90)
27 PRK14423 acylphosphatase; Prov 30.0 68 0.0015 25.7 3.5 21 286-306 30-50 (92)
28 PRK14445 acylphosphatase; Prov 29.9 69 0.0015 25.6 3.5 21 286-306 29-49 (91)
29 cd01891 TypA_BipA TypA (tyrosi 29.4 32 0.00069 30.2 1.6 13 199-211 2-14 (194)
30 PF00355 Rieske: Rieske [2Fe-2 29.1 20 0.00044 28.0 0.2 16 288-303 65-80 (97)
31 PF05952 ComX: Bacillus compet 28.4 71 0.0015 24.0 3.0 25 268-292 5-29 (57)
32 PRK14429 acylphosphatase; Prov 27.3 76 0.0016 25.3 3.3 20 287-306 28-47 (90)
33 PRK14430 acylphosphatase; Prov 27.0 70 0.0015 25.8 3.0 20 287-306 30-49 (92)
34 PRK14448 acylphosphatase; Prov 26.6 71 0.0015 25.6 3.0 20 287-306 28-47 (90)
35 PRK14441 acylphosphatase; Prov 26.5 91 0.002 25.1 3.6 21 286-306 30-50 (93)
36 PF13580 SIS_2: SIS domain; PD 25.6 1E+02 0.0022 26.1 4.0 39 159-206 99-138 (138)
37 TIGR01250 pro_imino_pep_2 prol 25.4 76 0.0017 27.9 3.3 31 188-218 84-114 (288)
38 cd01890 LepA LepA subfamily. 25.4 37 0.00079 28.8 1.2 12 200-211 1-12 (179)
39 TIGR03100 hydr1_PEP hydrolase, 25.2 75 0.0016 29.7 3.4 32 185-217 84-116 (274)
40 COG1116 TauB ABC-type nitrate/ 25.0 41 0.00088 32.3 1.5 16 199-214 29-44 (248)
41 PF00708 Acylphosphatase: Acyl 24.8 85 0.0018 24.7 3.1 20 287-306 30-49 (91)
42 PRK14436 acylphosphatase; Prov 24.7 91 0.002 25.0 3.3 20 287-306 30-49 (91)
43 KOG3995 3-hydroxyanthranilate 24.7 62 0.0013 30.7 2.6 47 281-327 195-253 (279)
44 PF12697 Abhydrolase_6: Alpha/ 24.6 79 0.0017 26.3 3.1 32 186-217 52-83 (228)
45 PRK14434 acylphosphatase; Prov 24.0 1E+02 0.0022 24.8 3.5 20 287-306 28-48 (92)
46 PRK14449 acylphosphatase; Prov 24.0 97 0.0021 24.7 3.3 20 287-306 29-48 (90)
47 cd03528 Rieske_RO_ferredoxin R 23.7 31 0.00067 27.0 0.4 15 288-302 61-75 (98)
48 PRK14451 acylphosphatase; Prov 23.3 91 0.002 24.9 3.1 20 287-306 29-48 (89)
49 PRK03592 haloalkane dehalogena 23.3 80 0.0017 29.2 3.2 31 188-218 81-111 (295)
50 PRK14425 acylphosphatase; Prov 23.1 99 0.0021 24.9 3.3 20 287-306 32-51 (94)
51 PRK14444 acylphosphatase; Prov 23.1 95 0.0021 24.9 3.1 20 287-306 30-49 (92)
52 PRK14422 acylphosphatase; Prov 22.9 95 0.0021 25.0 3.1 20 287-306 32-51 (93)
53 cd04160 Arfrp1 Arfrp1 subfamil 22.9 42 0.0009 28.0 1.1 14 201-214 1-14 (167)
54 cd01887 IF2_eIF5B IF2/eIF5B (i 22.7 49 0.0011 27.5 1.5 15 200-214 1-15 (168)
55 cd03529 Rieske_NirD Assimilato 22.7 25 0.00054 28.2 -0.3 15 288-302 67-81 (103)
56 PRK14426 acylphosphatase; Prov 22.7 1E+02 0.0022 24.8 3.2 19 287-305 30-48 (92)
57 cd03478 Rieske_AIFL_N AIFL (ap 22.4 30 0.00064 27.2 0.1 15 288-302 60-74 (95)
58 PRK14433 acylphosphatase; Prov 22.3 1E+02 0.0022 24.5 3.1 20 287-306 27-46 (87)
59 cd01878 HflX HflX subfamily. 22.2 54 0.0012 28.8 1.7 17 197-213 39-55 (204)
60 PF00561 Abhydrolase_1: alpha/ 22.1 83 0.0018 26.9 2.8 32 184-215 28-59 (230)
61 PLN02824 hydrolase, alpha/beta 22.1 87 0.0019 28.9 3.1 31 188-218 90-120 (294)
62 PRK14420 acylphosphatase; Prov 22.0 1.1E+02 0.0023 24.4 3.2 20 287-306 28-47 (91)
63 cd01015 CSHase N-carbamoylsarc 21.6 1.8E+02 0.0039 25.4 4.9 46 159-213 83-128 (179)
64 cd03548 Rieske_RO_Alpha_OMO_CA 21.1 53 0.0011 27.9 1.3 17 288-304 77-93 (136)
65 cd04167 Snu114p Snu114p subfam 20.6 52 0.0011 29.5 1.3 14 200-213 1-14 (213)
66 PRK14438 acylphosphatase; Prov 20.1 1.3E+02 0.0028 24.0 3.3 20 287-306 29-48 (91)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=5.1e-70 Score=519.59 Aligned_cols=266 Identities=54% Similarity=0.961 Sum_probs=236.7
Q ss_pred hHHHHhhhHHHhhhc-cccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHHHHhhh
Q 020134 58 IRDAQQGFTPVLKRR-SFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA 136 (330)
Q Consensus 58 ~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la 136 (330)
..-++.+|...++++ .+|+.+|+ .|+++||+||+....+ ...+++++++|++||+.|+..++.+++++|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La 108 (301)
T PLN03006 35 LKTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAID----RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLA 108 (301)
T ss_pred cceeEecccccccccccchhhhhh--hchHHHHHHHhhccCC----CCCcccHHHHHHHHHHhchhhccccCHHHHHHhc
Confidence 344667777666554 58889999 9999999999865532 2347999999999999999999999999999999
Q ss_pred hcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHH
Q 020134 137 KAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQAL 216 (330)
Q Consensus 137 ~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa 216 (330)
+||+|+++||+||||||||+.|||++|||+||||||||+|+|++.+..++.+||||||.+|||++|||||||+||||+|+
T Consensus 109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 109 DAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL 188 (301)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence 99999999999999999999999999999999999999999987655679999999999999999999999999999999
Q ss_pred hhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEEEc
Q 020134 217 MRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL 296 (330)
Q Consensus 217 ~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vYDi 296 (330)
++..+.+.. .++|+.|+..+.+++...........+++++..++++||+.||++|++||+|++++++|+|+|||||||+
T Consensus 189 l~~~~~g~~-~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi 267 (301)
T PLN03006 189 MKMEDEGDS-RSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNF 267 (301)
T ss_pred hhccccCCc-hhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEEC
Confidence 986655433 3799999998888776654333344677888899999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCccccccccccccccCCccC
Q 020134 297 LNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 330 (330)
Q Consensus 297 ~tG~ve~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 330 (330)
.||+|+.|+++|+.+..+.|+||+|++|||+|||
T Consensus 268 ~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 268 VDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred CCceEEEecccccccccccccCCceeeecccccC
Confidence 9999999999999999887889999999999998
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.5e-64 Score=484.81 Aligned_cols=256 Identities=38% Similarity=0.666 Sum_probs=226.6
Q ss_pred hhhhhhhHHHHhhhHHHhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHH
Q 020134 52 TMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEH 131 (330)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~ 131 (330)
.|...-+++||++|+|||++|.+|+.+|+ +|++++|+||+..... ..++++++++|++||.+|+...+.+++++
T Consensus 77 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~ 150 (347)
T PLN03014 77 EMGTEAYDEAIEALKKLLIEKEELKTVAA--AKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPAL 150 (347)
T ss_pred hhchhhHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHH
Confidence 34444589999999999999999999999 9999999999974321 13568999999999999999999999999
Q ss_pred HHhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCC-CCcchhhHHHHHHHhcCccEEEEeccCcc
Q 020134 132 FQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDC 210 (330)
Q Consensus 132 ~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHS~C 210 (330)
|+++++||+|+++||+||||||+|+.|||++|||+||+||+||+|++++. ++.++.++|||||.+|+|++|||||||+|
T Consensus 151 ~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~C 230 (347)
T PLN03014 151 YGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSAC 230 (347)
T ss_pred HHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999764 23468999999999999999999999999
Q ss_pred hHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEE
Q 020134 211 GGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIH 290 (330)
Q Consensus 211 Gav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~Vh 290 (330)
|||+|+++...++....++|+.|+..+.+++.+.........+.+++..++++||+.||++|++||+|++++++|+|.||
T Consensus 231 GaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~ 310 (347)
T PLN03014 231 GGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALK 310 (347)
T ss_pred hHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEE
Confidence 99999997543332223799999999999987665544455677778888999999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeecCCCCcc
Q 020134 291 GGYYDLLNCTFEKWTLDYKGRKV 313 (330)
Q Consensus 291 G~vYDi~tG~ve~~~~d~~~~~~ 313 (330)
||+||++||+|+.|..+++.+..
T Consensus 311 G~~YDi~TG~V~~l~~~~~~~~~ 333 (347)
T PLN03014 311 GGYYDFVKGAFELWGLEFGLSET 333 (347)
T ss_pred EEEEECCCceEEEeccccccCCc
Confidence 99999999999999999887663
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=2.8e-63 Score=477.08 Aligned_cols=251 Identities=39% Similarity=0.692 Sum_probs=221.5
Q ss_pred hhhHHHHhhhHHHhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHHHHhh
Q 020134 56 EKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNL 135 (330)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~l 135 (330)
.-+++||++|+|||++|.+|+.+|+ +|+.+||+||+..... ..++++++++|++||.+|+...+.+++++|.++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 76 ESYEDAIEALKKLLIEKDDLKDVAA--AKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hhHHHHHHHHHhhcccccccchHHH--HHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 3589999999999999999999999 9999999999975431 245799999999999999999999999999999
Q ss_pred hhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCC-CCcchhhHHHHHHHhcCccEEEEeccCcchHHH
Q 020134 136 AKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCGGIQ 214 (330)
Q Consensus 136 a~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~ 214 (330)
+.||+|+++||+||||||+|+.|||++|||+||||||||+|+|++. ++++++++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 9999999999999999999999999999999999999999999764 335688999999999999999999999999999
Q ss_pred HHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEE
Q 020134 215 ALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYY 294 (330)
Q Consensus 215 Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vY 294 (330)
|+++...++....++|..|+..+.|++...........+++++..+++ ||+.||++|+++|+|++++++|+|.||||+|
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~Y 308 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYY 308 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEE
Confidence 999754333222379999999999988665433333456666666666 9999999999999999999999999999999
Q ss_pred EcCCCeEEEEeecCCCCcc
Q 020134 295 DLLNCTFEKWTLDYKGRKV 313 (330)
Q Consensus 295 Di~tG~ve~~~~d~~~~~~ 313 (330)
|++||+|+.|..+|+.+..
T Consensus 309 Dl~TG~V~~~~~~~~~~~~ 327 (330)
T PLN03019 309 DFVNGSFELWELQFGISPV 327 (330)
T ss_pred ECCCceEEEEccccCcCCC
Confidence 9999999999999988653
No 4
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.5e-59 Score=437.93 Aligned_cols=249 Identities=42% Similarity=0.738 Sum_probs=214.4
Q ss_pred hhhhHHHHhhhHHHhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHHHHh
Q 020134 55 LEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQN 134 (330)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~ 134 (330)
++.+++++.+|.++|+.+..++.+++ .+...|++.|+.... .+.++|++|++||.+|....+.+++++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~ 73 (258)
T PLN00416 3 TESYEAAIKGLNDLLSTKADLGNVAA--AKIKALTAELKELDS-------SNSDAIERIKTGFTQFKTEKYLKNSTLFNH 73 (258)
T ss_pred cccHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHhcccccCHHHHHh
Confidence 34579999999999999999999999 999999999999763 356667777777777777667788999999
Q ss_pred hhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCC-CCcchhhHHHHHHHhcCccEEEEeccCcchHH
Q 020134 135 LAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCGGI 213 (330)
Q Consensus 135 la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav 213 (330)
++.||+|+++|||||||||+|+.|||++|||+|||||+||+|+|++. +.+++++||||||.+|||++|||||||+||||
T Consensus 74 la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV 153 (258)
T PLN00416 74 LAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGI 153 (258)
T ss_pred hccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 99999999999999999999999999999999999999999999764 22468899999999999999999999999999
Q ss_pred HHHhhhccCcc-hhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEE
Q 020134 214 QALMRMQDDVD-SRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGG 292 (330)
Q Consensus 214 ~Aa~~~~~~~~-~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~ 292 (330)
+|+++..+... ...+++..|+..+.+++..........++.+.+..++++||++|+++|++||+|++++++|+|.||||
T Consensus 154 ~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~ 233 (258)
T PLN00416 154 KGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGG 233 (258)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEE
Confidence 99987432211 11258999999999987654433334456666677889999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEeecCCCCc
Q 020134 293 YYDLLNCTFEKWTLDYKGRK 312 (330)
Q Consensus 293 vYDi~tG~ve~~~~d~~~~~ 312 (330)
+||++||+|+++.++++.+.
T Consensus 234 ~Ydl~TG~v~~~~~~~~~~p 253 (258)
T PLN00416 234 HYNFVKGTFDLWELDFKTTP 253 (258)
T ss_pred EEECCCceEEEeccCcCCCC
Confidence 99999999999999987655
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.8e-58 Score=438.02 Aligned_cols=235 Identities=54% Similarity=0.972 Sum_probs=203.7
Q ss_pred hhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhhhCCCCCc
Q 020134 86 AALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGE 165 (330)
Q Consensus 86 ~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGD 165 (330)
++++.++.+... ++..+++.|++|++||..|+..++.+++++|+.++.||+|+++||+||||||||+.|||++|||
T Consensus 56 ~~~~~~~~~~~~----~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGd 131 (290)
T PLN02154 56 LGIREEFMDLNR----ETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGE 131 (290)
T ss_pred chhhHHHHhccc----CcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCC
Confidence 345556655443 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHh
Q 020134 166 TFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTK 245 (330)
Q Consensus 166 lFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~ 245 (330)
+||+||+||+|++++.++.+++++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++....
T Consensus 132 lFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~ 211 (290)
T PLN02154 132 AFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQ 211 (290)
T ss_pred EEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999998776678999999999999999999999999999999997532211113689999988777655433
Q ss_pred hhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEEEcCCCeEEEEeecCCCCcccccccccccccc
Q 020134 246 AYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKD 325 (330)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vYDi~tG~ve~~~~d~~~~~~~~~~~~~~~~~~ 325 (330)
.......+++.++.++++||+.||++|++||+|++++++|+|+||||+||+.||.|+.|+.+.+ +.+++|++||
T Consensus 212 ~~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~------~f~~~~~~~~ 285 (290)
T PLN02154 212 LASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD------KTNYGFYISD 285 (290)
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC------cccCceeecc
Confidence 2223345667777889999999999999999999999999999999999999999999998775 4677899999
Q ss_pred CCccC
Q 020134 326 HSFWS 330 (330)
Q Consensus 326 ~~~~~ 330 (330)
|+|||
T Consensus 286 ~~~~~ 290 (290)
T PLN02154 286 REIWS 290 (290)
T ss_pred ccccC
Confidence 99998
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.7e-52 Score=373.58 Aligned_cols=187 Identities=47% Similarity=0.719 Sum_probs=161.0
Q ss_pred HHhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCC--CCcchhhHHHHHH
Q 020134 117 FLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN--GPSETNAALEFAV 194 (330)
Q Consensus 117 F~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~--~~~~~~aSLEyAV 194 (330)
|.+|+...+.+++++|++++.||+|+++||+||||||+|+.+|+.+|||+||+||+||+|++++. ++.++.++|||||
T Consensus 2 ~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav 81 (190)
T cd00884 2 FRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAV 81 (190)
T ss_pred hHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHH
Confidence 44555566678899999999999999999999999999999999999999999999999998754 4467999999999
Q ss_pred HhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhc
Q 020134 195 NTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLT 274 (330)
Q Consensus 195 ~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~ 274 (330)
.+|+|++|||||||+||||+|+++.... ....+++..|+..+.++...........+..+..+..++.||.+|+++|++
T Consensus 82 ~~l~v~~ivV~GH~~Cgav~Aa~~~~~~-~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 82 AVLKVEHIVVCGHSDCGGIRALLSPEDL-LDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHhCCCEEEEeCCCcchHHHHHhccccc-cCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875431 112368999999999987765443333345556678899999999999999
Q ss_pred ChhHHHHHhcCceEEEEEEEEcCCCeEEEE
Q 020134 275 YPWIEERVRKELLFIHGGYYDLLNCTFEKW 304 (330)
Q Consensus 275 sP~I~~~v~~g~L~VhG~vYDi~tG~ve~~ 304 (330)
+|+|++++++|+|+||||+||+.||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999854
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.5e-51 Score=366.61 Aligned_cols=179 Identities=31% Similarity=0.526 Sum_probs=154.1
Q ss_pred HhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhc
Q 020134 118 LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTL 197 (330)
Q Consensus 118 ~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L 197 (330)
.+|....+.+.+++|++++.||+|+++|||||||||+|+.|||++|||+||+||+||+|++.+ .++.+||||||.+|
T Consensus 2 ~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~---~~~~asleyAv~~L 78 (182)
T cd00883 2 RAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTD---LNCLSVLQYAVDVL 78 (182)
T ss_pred hhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCC---cchhhhHHHHHHhc
Confidence 345555577889999999999999999999999999999999999999999999999999864 36899999999999
Q ss_pred CccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCC-CHHHHhHHHHHHHHHHHHHHhhcCh
Q 020134 198 EVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHL-SFDQQCRHCEKESISRSILNLLTYP 276 (330)
Q Consensus 198 ~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l-~~~~~~~~~~~~nV~~qv~~L~~sP 276 (330)
||++|||||||+||||+|+++... .+++..|+..+.++........... +.++....++++||++|+++|++||
T Consensus 79 ~v~~IvV~GHs~CGav~a~~~~~~-----~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p 153 (182)
T cd00883 79 KVKHIIVCGHYGCGGVKAALTGKR-----LGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTP 153 (182)
T ss_pred CCCEEEEecCCCchHHHHHHcCCC-----CccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 999999999999999999986531 2689999998888665432212222 3445567789999999999999999
Q ss_pred hHHHHHhc-CceEEEEEEEEcCCCeEEEE
Q 020134 277 WIEERVRK-ELLFIHGGYYDLLNCTFEKW 304 (330)
Q Consensus 277 ~I~~~v~~-g~L~VhG~vYDi~tG~ve~~ 304 (330)
+|++++++ |+|.||||+||+.||+|+.+
T Consensus 154 ~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 154 IVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 99999999 89999999999999999863
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=8.9e-51 Score=374.49 Aligned_cols=194 Identities=26% Similarity=0.453 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhh
Q 020134 109 YFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNA 188 (330)
Q Consensus 109 ~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~a 188 (330)
.+++|++||..|....+..++++|+.++.||+|+++|||||||||+|+.+||++|||+||+||+||+|++.+ .++++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~---~~~~~ 79 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD---LNCLS 79 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCC---cchHH
Confidence 367788888888877777889999999999999999999999999999999999999999999999999764 36899
Q ss_pred HHHHHHHhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHH
Q 020134 189 ALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRS 268 (330)
Q Consensus 189 SLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~q 268 (330)
+|||||.+|||++|||||||+||||+|+++... .+++..|+.++.++...........+..+.++..+++||..|
T Consensus 80 ~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~q 154 (220)
T PRK10437 80 VVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQ 154 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996432 168999999999887654433334455566778899999999
Q ss_pred HHHhhcChhHHHHHhcC-ceEEEEEEEEcCCCeEEEEeecCCC
Q 020134 269 ILNLLTYPWIEERVRKE-LLFIHGGYYDLLNCTFEKWTLDYKG 310 (330)
Q Consensus 269 v~~L~~sP~I~~~v~~g-~L~VhG~vYDi~tG~ve~~~~d~~~ 310 (330)
+++|+++|+|++++++| +|+||||+||+.||+|+.++.....
T Consensus 155 v~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 155 VYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 99999999999999999 6999999999999999998876544
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.2e-49 Score=372.36 Aligned_cols=186 Identities=21% Similarity=0.259 Sum_probs=151.3
Q ss_pred CchHHHHHHHHHHHHhchhccchhchHHH---HhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCC
Q 020134 104 CGGLDYFEEMKQRFLSFKKNKYFEELEHF---QNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLE 180 (330)
Q Consensus 104 ~~~~~~l~~l~~rF~~f~~~~~~~~~~~~---~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~ 180 (330)
+++++.|.++|+||+++. +. +++++ .++++||+|+++||+|||||||||.|||.+|||+||+||+||+|++
T Consensus 54 ~~al~~L~~GN~rF~~~~---~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~-- 127 (245)
T PRK15219 54 DQIIESLKQGNKRFRSGK---PA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND-- 127 (245)
T ss_pred HHHHHHHHHHHHHHHhcC---cC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc--
Confidence 344455555555555544 32 23322 3467999999999999999999999999999999999999999975
Q ss_pred CCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhh-cCCCHHHHhHH
Q 020134 181 NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT-AHLSFDQQCRH 259 (330)
Q Consensus 181 ~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~-~~l~~~~~~~~ 259 (330)
++++||||||.+|+|++|||||||+||||+|+++... .+++..|++.++|+....+... ...+.++.+..
T Consensus 128 ----~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~ 198 (245)
T PRK15219 128 ----DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDA 198 (245)
T ss_pred ----chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHH
Confidence 5889999999999999999999999999999997532 2689999999999876543211 11133445677
Q ss_pred HHHHHHHHHHHHhhc-ChhHHHHHhcCceEEEEEEEEcCCCeEEEE
Q 020134 260 CEKESISRSILNLLT-YPWIEERVRKELLFIHGGYYDLLNCTFEKW 304 (330)
Q Consensus 260 ~~~~nV~~qv~~L~~-sP~I~~~v~~g~L~VhG~vYDi~tG~ve~~ 304 (330)
++++||+.|+++|++ +|++++.+++|+|+||||+||++||+|+++
T Consensus 199 ~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 199 VARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 889999999999985 899999999999999999999999999976
No 10
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=357.59 Aligned_cols=196 Identities=27% Similarity=0.462 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhchhccchhchHHHHhhhh-cCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchh
Q 020134 109 YFEEMKQRFLSFKKNKYFEELEHFQNLAK-AQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETN 187 (330)
Q Consensus 109 ~l~~l~~rF~~f~~~~~~~~~~~~~~la~-gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~ 187 (330)
.++.|++++.+|....+++.+++|+.++. +|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+++
T Consensus 3 ~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~---~~~l 79 (207)
T COG0288 3 ALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD---GSVL 79 (207)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc---cchh
Confidence 56677777777777768888999998765 5999999999999999999999999999999999999999864 4799
Q ss_pred hHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHH-HHhHHHHHHHHH
Q 020134 188 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFD-QQCRHCEKESIS 266 (330)
Q Consensus 188 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~-~~~~~~~~~nV~ 266 (330)
+||||||.+|||++|||||||+|||++|+++....+.. .+..|+.++.+............... ......++.||+
T Consensus 80 ~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~ 156 (207)
T COG0288 80 RSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVR 156 (207)
T ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHH
Confidence 99999999999999999999999999999876544211 48999987777655443322222221 345566789999
Q ss_pred HHHHHhhcChhHHHHHhcCc-eEEEEEEEEcCCCeEEEEeecCCC
Q 020134 267 RSILNLLTYPWIEERVRKEL-LFIHGGYYDLLNCTFEKWTLDYKG 310 (330)
Q Consensus 267 ~qv~~L~~sP~I~~~v~~g~-L~VhG~vYDi~tG~ve~~~~d~~~ 310 (330)
.||++|+++|.|+.++..|+ |.||||+||++||++..+......
T Consensus 157 ~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 157 EQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 99999999999999987776 999999999999999988876554
No 11
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=367.18 Aligned_cols=251 Identities=39% Similarity=0.618 Sum_probs=228.9
Q ss_pred hhhhhhHHHHhhhHHHhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhccchhchHHH
Q 020134 53 MKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHF 132 (330)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~ 132 (330)
|....++.++..+.++|..+.++ +|+ .++.+||++ ++.++++.++|+.|+..++..+|.+|
T Consensus 25 mp~~~~~~~~~~dsrml~~r~~~--~~~--~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~f 85 (276)
T KOG1578|consen 25 MPSPTAVMFTCMDSRMLPTRYNL--VAA--AKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTLF 85 (276)
T ss_pred CCCHHHHHHHHHHhhccchhhhh--hhh--hhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhhh
Confidence 33445678888899999999998 888 899999993 57889999999999999999999999
Q ss_pred HhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCC-CCcchhhHHHHHHHhcCccEEEEeccCcch
Q 020134 133 QNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCG 211 (330)
Q Consensus 133 ~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CG 211 (330)
..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+|+|++. ++.++.++|||||.+|+|++|+||||++||
T Consensus 86 ~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cg 165 (276)
T KOG1578|consen 86 GALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCG 165 (276)
T ss_pred HHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCC
Confidence 9999999999999999999999999999999999999999999998865 567889999999999999999999999999
Q ss_pred HHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEE
Q 020134 212 GIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHG 291 (330)
Q Consensus 212 av~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG 291 (330)
|++++|....++. ..+++.+|+....+++..++...+.+++++||..|+.+.++.++.+|.+||++++++.+|.+++||
T Consensus 166 Gik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~G 244 (276)
T KOG1578|consen 166 GIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVHG 244 (276)
T ss_pred chhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeeee
Confidence 9999999877655 348999999999999998888888899999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeecCCCCccccccccccccccCCccC
Q 020134 292 GYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 330 (330)
Q Consensus 292 ~vYDi~tG~ve~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 330 (330)
++||+.+|.+++|.+| + .++..|.+..+.+|+
T Consensus 245 ~~Y~fskg~~~~~~ld-e------kt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 245 GYYNFSKGTKEFWELD-E------KTVDGLKTEKRSVYS 276 (276)
T ss_pred eeEEeccCceeEEEec-c------ccccccccccccccC
Confidence 9999999999999999 2 344468888888885
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.9e-45 Score=319.60 Aligned_cols=151 Identities=31% Similarity=0.466 Sum_probs=131.0
Q ss_pred CchHHHHHHHHHHHHhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCC
Q 020134 104 CGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGP 183 (330)
Q Consensus 104 ~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~ 183 (330)
+++++.|.++|++|.......+..+++.|..++++|+|+++||||||||++|+.+|+++|||+||+||+||++++
T Consensus 2 ~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~----- 76 (154)
T cd03378 2 DEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD----- 76 (154)
T ss_pred hHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh-----
Confidence 445555555566665543322223367789999999999999999999999999999999999999999999986
Q ss_pred cchhhHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHH
Q 020134 184 SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKE 263 (330)
Q Consensus 184 ~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~ 263 (330)
++++|||||+.+|||++|||||||+||+++++ ++++
T Consensus 77 -~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~~ 112 (154)
T cd03378 77 -DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVRA 112 (154)
T ss_pred -hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHHH
Confidence 58999999999999999999999999999865 2478
Q ss_pred HHHHHHHHhhcChhHHH-HHhcCceEEEEEEEEcCCCeEEE
Q 020134 264 SISRSILNLLTYPWIEE-RVRKELLFIHGGYYDLLNCTFEK 303 (330)
Q Consensus 264 nV~~qv~~L~~sP~I~~-~v~~g~L~VhG~vYDi~tG~ve~ 303 (330)
||+.|+++|+++|+|++ ++++|+|.||||+||++||++++
T Consensus 113 nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~ 153 (154)
T cd03378 113 NVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEF 153 (154)
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEe
Confidence 99999999999999888 99999999999999999999986
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=2.2e-42 Score=299.49 Aligned_cols=151 Identities=34% Similarity=0.605 Sum_probs=122.1
Q ss_pred eEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHhhhccC
Q 020134 143 FMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 222 (330)
Q Consensus 143 ~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~ 222 (330)
++||||||||++|+.+|+.+|||+||+||+||++++.+ .++++|||||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 58999999999999999999999999999999998753 47999999999999999999999999999999876322
Q ss_pred cchhhhhHHHHHHhhHHHHHHH-hhhhcCC-CHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEEEcCCCe
Q 020134 223 VDSRQSLTENWVVNAKVAKFRT-KAYTAHL-SFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCT 300 (330)
Q Consensus 223 ~~~~~~~i~~wl~~~~~a~~~~-~~~~~~l-~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vYDi~tG~ 300 (330)
..+.+.+|+....++.... ....... ++.. ....+++||++|+++|+++|+|++++++|+|.||||+||++||+
T Consensus 77 ---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ---EDGFLRDWLQKIRPALEECVDELLPSSWDFED-LDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ---TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHH-HHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ---ccchHHHHHHhhhhhHHHHHHHhhcccccHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 1268999999888876652 2211111 2333 33448999999999999999999999999999999999999998
Q ss_pred E
Q 020134 301 F 301 (330)
Q Consensus 301 v 301 (330)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.3e-41 Score=282.15 Aligned_cols=119 Identities=43% Similarity=0.754 Sum_probs=112.2
Q ss_pred CCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 020134 139 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 139 Q~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
|+|+++||||||||++|+.+||++|||+||+||+||++++.+ .++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~---~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD---LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc---ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH---
Confidence 899999999999999999999999999999999999999753 47999999999999999999999999999975
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEEEcCC
Q 020134 219 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 298 (330)
Q Consensus 219 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vYDi~t 298 (330)
..++||+.|+++|++||+++++++.+++.|||++||++|
T Consensus 75 -----------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~t 113 (119)
T cd00382 75 -----------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIET 113 (119)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCC
Confidence 246799999999999999999999999999999999999
Q ss_pred CeEEEE
Q 020134 299 CTFEKW 304 (330)
Q Consensus 299 G~ve~~ 304 (330)
|++++|
T Consensus 114 G~v~~~ 119 (119)
T cd00382 114 GKLEVL 119 (119)
T ss_pred CEEEeC
Confidence 999875
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.2e-38 Score=272.96 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=112.7
Q ss_pred CCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 020134 139 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 139 Q~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
+.++++||||||||++|+.+||++|||+||+||+||+|++ ++++|||||+.+||+++|+|||||+|||++++.+
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4689999999999999999999999999999999999986 5899999999999999999999999999998653
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHhhcChhHHHHHhcCceEEEEEEEEcCC
Q 020134 219 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 298 (330)
Q Consensus 219 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~l~~~~~~~~~~~~nV~~qv~~L~~sP~I~~~v~~g~L~VhG~vYDi~t 298 (330)
.+..|+............ ...........+++||++|+++|+++|+|++ +++||||+||++|
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~t 136 (142)
T cd03379 75 ----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKT 136 (142)
T ss_pred ----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCC
Confidence 233455421110000000 0111111234678999999999999999997 5899999999999
Q ss_pred CeEEEE
Q 020134 299 CTFEKW 304 (330)
Q Consensus 299 G~ve~~ 304 (330)
|+++.+
T Consensus 137 G~v~~v 142 (142)
T cd03379 137 GKLTEV 142 (142)
T ss_pred CEEEeC
Confidence 999863
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.00 E-value=4.2e-07 Score=86.36 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=86.2
Q ss_pred HHHHHhchhccchhchHHHHhhhhcCCCceEEeccccCCCChhhh----------------hCCCCCcEEEEeccCCcCC
Q 020134 114 KQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYI----------------LGLQPGETFMIRNVANLVP 177 (330)
Q Consensus 114 ~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i----------------lg~~pGDlFVvRNaGN~V~ 177 (330)
..|+.+|....+.+.. .++..-++|.+..++|+|||+-|... +....||.|++||.||..+
T Consensus 4 ~~~~~~~~~t~~~~~~---~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~~ 80 (276)
T KOG1578|consen 4 LRGVIRFRNTTRKDLV---EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYIP 80 (276)
T ss_pred ccccchhhhhhHHHhH---HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCCC
Confidence 3445555544332222 55667789999999999999999776 6678999999999999998
Q ss_pred CCCC-CC-----cchhhHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCc--chh---hhhHHHHHHh
Q 020134 178 PLEN-GP-----SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDV--DSR---QSLTENWVVN 236 (330)
Q Consensus 178 ~~~~-~~-----~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~~~~~~--~~~---~~~i~~wl~~ 236 (330)
.... +. +--.++|+-|+..-...||++|||++|-+++...+..... ..+ .+.++.|+..
T Consensus 81 ~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 81 NPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred ChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 5432 11 1123567778888889999999999999999877654321 011 1578899863
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=64.94 E-value=11 Score=41.79 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=29.6
Q ss_pred HhhcChhHHHHHhcCce------EEEEEEEEcCCCeEEEEeecC
Q 020134 271 NLLTYPWIEERVRKELL------FIHGGYYDLLNCTFEKWTLDY 308 (330)
Q Consensus 271 ~L~~sP~I~~~v~~g~L------~VhG~vYDi~tG~ve~~~~d~ 308 (330)
.|.+.|-||+.+++..| .-+|+..|..|.+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 35566777777765544 468999999999999998875
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=51.53 E-value=12 Score=30.48 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=17.8
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
|.|+||+++..+|.|+.+-.
T Consensus 30 lgl~G~V~N~~DGsVeiva~ 49 (92)
T COG1254 30 LGLTGWVKNLDDGSVEIVAE 49 (92)
T ss_pred CCCEEEEEECCCCeEEEEEE
Confidence 67999999999999997754
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=41.55 E-value=1.2e+02 Score=25.86 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred hhhhcCCCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHH
Q 020134 134 NLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGI 213 (330)
Q Consensus 134 ~la~gQ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav 213 (330)
-+..|-.|.+.||-+==-|-+...... .....+.++|..+.++. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 5 ll~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 5 LLEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HHhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 345788999999998888887655444 56678999999999985 68889999988878889999999999888
Q ss_pred HHHhhhcc
Q 020134 214 QALMRMQD 221 (330)
Q Consensus 214 ~Aa~~~~~ 221 (330)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 87765543
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=39.33 E-value=25 Score=30.80 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=29.2
Q ss_pred cchhhHHHHHHHh-----cCccEEEEeccCcchHHHHHhh
Q 020134 184 SETNAALEFAVNT-----LEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 184 ~~~~aSLEyAV~~-----L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
.++.++++|...+ ...+.|+|+|||..|.+...+.
T Consensus 50 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 50 EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred cccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 3678899999988 7789999999999998876543
No 21
>PRK11440 putative hydrolase; Provisional
Probab=34.93 E-value=75 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=33.3
Q ss_pred hCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHH
Q 020134 159 LGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQA 215 (330)
Q Consensus 159 lg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~A 215 (330)
|...+||.++.++--+-+... .|+.-+...|+++|||+|=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~T---------~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT---------DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC---------CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 455788988877755544321 367667899999999999665555543
No 22
>PRK14432 acylphosphatase; Provisional
Probab=33.39 E-value=46 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=17.1
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|+||+.+..+|.|+.+-.
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 28 MKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999998887643
No 23
>PLN02621 nicotinamidase
Probab=33.02 E-value=2.4e+02 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=30.9
Q ss_pred EeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccC
Q 020134 145 VIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHS 208 (330)
Q Consensus 145 VItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS 208 (330)
+-+.-...+.|+. --..++|..+.+.--+-... .-|+.-+...|+++|||+|=.
T Consensus 83 ~~gs~g~~i~~~L-~~~~~~~~vi~K~~~saf~~---------t~L~~~L~~~gi~~lvi~Gv~ 136 (197)
T PLN02621 83 LDGTTEAELMPEI-GRVTGPDEVVEKSTYSAFYN---------TRLEERLRKIGVKEVIVTGVM 136 (197)
T ss_pred cCCCCccccchhc-cCCCCCCEEEECCCcCCCCC---------CcHHHHHHHCCCCEEEEEecc
Confidence 3344444444442 11246776666643332221 136766889999999999953
No 24
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=32.63 E-value=24 Score=30.94 Aligned_cols=15 Identities=47% Similarity=0.880 Sum_probs=12.9
Q ss_pred ccEEEEeccCcchHH
Q 020134 199 VQNILVIGHSDCGGI 213 (330)
Q Consensus 199 Vk~IVV~GHS~CGav 213 (330)
+.+|.|+||.+||=.
T Consensus 3 ~~~I~i~G~~~sGKT 17 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKT 17 (188)
T ss_dssp EEEEEEEESTTSSHH
T ss_pred EEEEEEECCCCCCcE
Confidence 578999999999943
No 25
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.95 E-value=1.4e+02 Score=25.46 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=44.2
Q ss_pred CCceEEeccccCCCChhhhhCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHHHHHh
Q 020134 140 SPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 217 (330)
Q Consensus 140 ~P~~lVItCsDSRV~Pe~ilg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~ 217 (330)
.+.....+..++.+.|+. .-.+||..+.++--|..... -|+.-+...|+++|+|+|-.-.+-|.+..
T Consensus 64 ~~~~~~~g~~~~~l~~~l--~~~~~~~vi~K~~~saf~~t---------~L~~~L~~~gi~~vil~G~~t~~CV~~Ta 130 (174)
T PF00857_consen 64 WPPHCIPGSPGAELVPEL--APQPGDPVIEKNRYSAFFGT---------DLDEILRKRGIDTVILCGVATDVCVLATA 130 (174)
T ss_dssp HTSCSBTTSGGGSBHGGG--HCHTTSEEEEESSSSTTTTS---------SHHHHHHHTTESEEEEEEESTTTHHHHHH
T ss_pred ccccccCCCCccceeeEe--ecccccceEEeecccccccc---------cccccccccccceEEEcccccCcEEehhH
Confidence 333344444445443332 22239999999977766432 36777888999999999988888776543
No 26
>PRK14440 acylphosphatase; Provisional
Probab=30.42 E-value=58 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=17.1
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14440 29 LGIKGYAKNLPDGSVEVVAE 48 (90)
T ss_pred cCCEEEEEECCCCCEEEEEE
Confidence 67999999999998886654
No 27
>PRK14423 acylphosphatase; Provisional
Probab=29.98 E-value=68 Score=25.72 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=17.5
Q ss_pred ceEEEEEEEEcCCCeEEEEee
Q 020134 286 LLFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 286 ~L~VhG~vYDi~tG~ve~~~~ 306 (330)
++.|.||+.++.+|.|+..-.
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~~ 50 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVFE 50 (92)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 378999999999998886543
No 28
>PRK14445 acylphosphatase; Provisional
Probab=29.89 E-value=69 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=17.2
Q ss_pred ceEEEEEEEEcCCCeEEEEee
Q 020134 286 LLFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 286 ~L~VhG~vYDi~tG~ve~~~~ 306 (330)
++.|.||+.+..+|.|+..-.
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEAQ 49 (91)
T ss_pred hCCCEEEEEECCCCeEEEEEE
Confidence 368999999999998886543
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=29.41 E-value=32 Score=30.17 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=12.2
Q ss_pred ccEEEEeccCcch
Q 020134 199 VQNILVIGHSDCG 211 (330)
Q Consensus 199 Vk~IVV~GHS~CG 211 (330)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 30
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=29.13 E-value=20 Score=27.98 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=13.4
Q ss_pred EEEEEEEEcCCCeEEE
Q 020134 288 FIHGGYYDLLNCTFEK 303 (330)
Q Consensus 288 ~VhG~vYDi~tG~ve~ 303 (330)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 3799999999997653
No 31
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=28.44 E-value=71 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.0
Q ss_pred HHHHhhcChhHHHHHhcCceEEEEE
Q 020134 268 SILNLLTYPWIEERVRKELLFIHGG 292 (330)
Q Consensus 268 qv~~L~~sP~I~~~v~~g~L~VhG~ 292 (330)
-|..|.++|-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3678889999999999999999885
No 32
>PRK14429 acylphosphatase; Provisional
Probab=27.30 E-value=76 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 28 ~gl~G~V~N~~dG~Vei~~q 47 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEILAQ 47 (90)
T ss_pred hCCEEEEEECCCCeEEEEEE
Confidence 67999999999998886544
No 33
>PRK14430 acylphosphatase; Provisional
Probab=27.02 E-value=70 Score=25.77 Aligned_cols=20 Identities=20% Similarity=0.017 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+..-.
T Consensus 30 lgl~G~VrN~~dGsVei~~q 49 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVMAS 49 (92)
T ss_pred hCCEEEEEECCCCcEEEEEE
Confidence 67999999999998886543
No 34
>PRK14448 acylphosphatase; Provisional
Probab=26.65 E-value=71 Score=25.56 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14448 28 IGIKGYVKNRPDGSVEVVAV 47 (90)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999998886544
No 35
>PRK14441 acylphosphatase; Provisional
Probab=26.52 E-value=91 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcCCCeEEEEee
Q 020134 286 LLFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 286 ~L~VhG~vYDi~tG~ve~~~~ 306 (330)
++.|.||+.+..+|.|+.+-.
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~q 50 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEAE 50 (93)
T ss_pred hcCcEEEEEECCCCEEEEEEE
Confidence 478999999999998886544
No 36
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.63 E-value=1e+02 Score=26.08 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred hCCCCCcEEE-EeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEec
Q 020134 159 LGLQPGETFM-IRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIG 206 (330)
Q Consensus 159 lg~~pGDlFV-vRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~G 206 (330)
.+.+|||+++ +-+-||-- .++.++++| +..|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 3478999665 55556553 477888887 567999988865
No 37
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=25.37 E-value=76 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=23.9
Q ss_pred hHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 020134 188 AALEFAVNTLEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 188 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
..+...+..++.+.|+|+|||--|.+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 4445557788999999999999998876543
No 38
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=25.37 E-value=37 Score=28.78 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=11.1
Q ss_pred cEEEEeccCcch
Q 020134 200 QNILVIGHSDCG 211 (330)
Q Consensus 200 k~IVV~GHS~CG 211 (330)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 39
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=25.21 E-value=75 Score=29.67 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=21.4
Q ss_pred chhhHHHHHHHhc-CccEEEEeccCcchHHHHHh
Q 020134 185 ETNAALEFAVNTL-EVQNILVIGHSDCGGIQALM 217 (330)
Q Consensus 185 ~~~aSLEyAV~~L-~Vk~IVV~GHS~CGav~Aa~ 217 (330)
++.+++++-...+ +.+.|+++|||- ||.-+++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 4566666544443 678899999998 5555443
No 40
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.97 E-value=41 Score=32.30 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=13.1
Q ss_pred ccEEEEeccCcchHHH
Q 020134 199 VQNILVIGHSDCGGIQ 214 (330)
Q Consensus 199 Vk~IVV~GHS~CGav~ 214 (330)
=+-|.|+|||+||=-+
T Consensus 29 GEfvsilGpSGcGKST 44 (248)
T COG1116 29 GEFVAILGPSGCGKST 44 (248)
T ss_pred CCEEEEECCCCCCHHH
Confidence 4789999999999443
No 41
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=24.79 E-value=85 Score=24.68 Aligned_cols=20 Identities=20% Similarity=0.031 Sum_probs=14.7
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 30 ~gl~G~V~N~~dg~V~i~~~ 49 (91)
T PF00708_consen 30 LGLTGWVRNLPDGSVEIEAE 49 (91)
T ss_dssp TT-EEEEEE-TTSEEEEEEE
T ss_pred hCCceEEEECCCCEEEEEEE
Confidence 56999999999998876543
No 42
>PRK14436 acylphosphatase; Provisional
Probab=24.66 E-value=91 Score=25.00 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 30 l~l~G~V~N~~dG~Vei~~q 49 (91)
T PRK14436 30 LGVNGWVRNLPDGSVEAVLE 49 (91)
T ss_pred cCCEEEEEECCCCcEEEEEE
Confidence 67999999999998886543
No 43
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=24.65 E-value=62 Score=30.71 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHhcCceEEEEE------------EEEcCCCeEEEEeecCCCCccccccccccccccCC
Q 020134 281 RVRKELLFIHGG------------YYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHS 327 (330)
Q Consensus 281 ~v~~g~L~VhG~------------vYDi~tG~ve~~~~d~~~~~~~~~~~~~~~~~~~~ 327 (330)
.+++|.|.|.|- -||...|.++.|-+--+.+.+-+++|-+|+.|+.+
T Consensus 195 e~~~gp~~~~g~~y~t~v~~~g~gs~~~~~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s 253 (279)
T KOG3995|consen 195 ELQAGPLSLFGDTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGRRLSLAPDS 253 (279)
T ss_pred HHhcCCeeeeCccceeeEEEeccccchhhcCceEEEEEEecCceEEeecCeEEeeCCcc
Confidence 467888888884 46788999999999888888877777788888765
No 44
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=24.58 E-value=79 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=25.1
Q ss_pred hhhHHHHHHHhcCccEEEEeccCcchHHHHHh
Q 020134 186 TNAALEFAVNTLEVQNILVIGHSDCGGIQALM 217 (330)
Q Consensus 186 ~~aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~ 217 (330)
....|.-.+..++.+.|+|+|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 44567777899999999999999877666433
No 45
>PRK14434 acylphosphatase; Provisional
Probab=24.04 E-value=1e+02 Score=24.82 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=16.8
Q ss_pred eE-EEEEEEEcCCCeEEEEee
Q 020134 287 LF-IHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~-VhG~vYDi~tG~ve~~~~ 306 (330)
+. |.||+.+..+|.|+..-.
T Consensus 28 lg~l~G~V~N~~dGsVei~~q 48 (92)
T PRK14434 28 IGDIYGRVWNNDDGTVEILAQ 48 (92)
T ss_pred cCCcEEEEEECCCCCEEEEEE
Confidence 67 999999999998876544
No 46
>PRK14449 acylphosphatase; Provisional
Probab=23.97 E-value=97 Score=24.68 Aligned_cols=20 Identities=25% Similarity=0.091 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+..-.
T Consensus 29 lgl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14449 29 LGITGYAENLYDGSVEVVAE 48 (90)
T ss_pred cCCEEEEEECCCCeEEEEEE
Confidence 67999999999998886544
No 47
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=23.75 E-value=31 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.2
Q ss_pred EEEEEEEEcCCCeEE
Q 020134 288 FIHGGYYDLLNCTFE 302 (330)
Q Consensus 288 ~VhG~vYDi~tG~ve 302 (330)
..|||.||+.||...
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 489999999999764
No 48
>PRK14451 acylphosphatase; Provisional
Probab=23.35 E-value=91 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|+||+.+..+|.|+..-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~q 48 (89)
T PRK14451 29 LMISGWARNLADGRVEVFAC 48 (89)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999998886543
No 49
>PRK03592 haloalkane dehalogenase; Provisional
Probab=23.33 E-value=80 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 020134 188 AALEFAVNTLEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 188 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
.-+.--+..|+.+.++|+|||-.|.+...+.
T Consensus 81 ~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 81 RYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 4455557789999999999999999876554
No 50
>PRK14425 acylphosphatase; Provisional
Probab=23.14 E-value=99 Score=24.95 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+.+-.
T Consensus 32 ~gl~G~V~N~~dGsVei~~q 51 (94)
T PRK14425 32 LGLTGWVRNESDGSVTALIA 51 (94)
T ss_pred hCCEEEEEECCCCeEEEEEE
Confidence 57999999999999886643
No 51
>PRK14444 acylphosphatase; Provisional
Probab=23.12 E-value=95 Score=24.91 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+..-.
T Consensus 30 lgl~G~V~N~~dG~Vei~~q 49 (92)
T PRK14444 30 AGVKGWVRNLSDGRVEAVFE 49 (92)
T ss_pred hCCEEEEEECCCCcEEEEEE
Confidence 68999999999998775543
No 52
>PRK14422 acylphosphatase; Provisional
Probab=22.93 E-value=95 Score=25.00 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+..-.
T Consensus 32 ~gl~G~V~N~~dG~Vei~~~ 51 (93)
T PRK14422 32 LGLTGYAANLADGRVQVVAE 51 (93)
T ss_pred cCCEEEEEECCCCCEEEEEE
Confidence 68999999999998886543
No 53
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.86 E-value=42 Score=27.99 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.5
Q ss_pred EEEEeccCcchHHH
Q 020134 201 NILVIGHSDCGGIQ 214 (330)
Q Consensus 201 ~IVV~GHS~CGav~ 214 (330)
+|+|+||.+||=-.
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 48999999999443
No 54
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=22.75 E-value=49 Score=27.47 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.2
Q ss_pred cEEEEeccCcchHHH
Q 020134 200 QNILVIGHSDCGGIQ 214 (330)
Q Consensus 200 k~IVV~GHS~CGav~ 214 (330)
+.|+|+||++||=-.
T Consensus 1 ~~i~iiG~~~~GKts 15 (168)
T cd01887 1 PVVTVMGHVDHGKTT 15 (168)
T ss_pred CEEEEEecCCCCHHH
Confidence 469999999999433
No 55
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=22.74 E-value=25 Score=28.22 Aligned_cols=15 Identities=7% Similarity=-0.115 Sum_probs=12.9
Q ss_pred EEEEEEEEcCCCeEE
Q 020134 288 FIHGGYYDLLNCTFE 302 (330)
Q Consensus 288 ~VhG~vYDi~tG~ve 302 (330)
..|||.||+.||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 379999999999864
No 56
>PRK14426 acylphosphatase; Provisional
Probab=22.68 E-value=1e+02 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=16.3
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 020134 287 LFIHGGYYDLLNCTFEKWT 305 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~ 305 (330)
+.|.||+.+..+|.|+..-
T Consensus 30 ~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 30 LGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred hCCEEEEEECCCCcEEEEE
Confidence 6899999999999887654
No 57
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=22.44 E-value=30 Score=27.19 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred EEEEEEEEcCCCeEE
Q 020134 288 FIHGGYYDLLNCTFE 302 (330)
Q Consensus 288 ~VhG~vYDi~tG~ve 302 (330)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 489999999999755
No 58
>PRK14433 acylphosphatase; Provisional
Probab=22.30 E-value=1e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.++.+|.|+.+-.
T Consensus 27 ~~l~G~V~N~~dG~Vei~~~ 46 (87)
T PRK14433 27 LGLSGYAENLSDGRVEVVAE 46 (87)
T ss_pred cCCEEEEEECCCCCEEEEEE
Confidence 68999999999998886654
No 59
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=22.16 E-value=54 Score=28.76 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.0
Q ss_pred cCccEEEEeccCcchHH
Q 020134 197 LEVQNILVIGHSDCGGI 213 (330)
Q Consensus 197 L~Vk~IVV~GHS~CGav 213 (330)
=++..|+|+||++||=-
T Consensus 39 ~~~~~I~iiG~~g~GKS 55 (204)
T cd01878 39 SGIPTVALVGYTNAGKS 55 (204)
T ss_pred cCCCeEEEECCCCCCHH
Confidence 34689999999999943
No 60
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.11 E-value=83 Score=26.88 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHhcCccEEEEeccCcchHHHH
Q 020134 184 SETNAALEFAVNTLEVQNILVIGHSDCGGIQA 215 (330)
Q Consensus 184 ~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav~A 215 (330)
.+..+.+++-..+|+++.|.++|||-=|.+..
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~ 59 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLAL 59 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHH
Confidence 46778899999999999999999998444443
No 61
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=22.10 E-value=87 Score=28.91 Aligned_cols=31 Identities=16% Similarity=0.022 Sum_probs=23.8
Q ss_pred hHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 020134 188 AALEFAVNTLEVQNILVIGHSDCGGIQALMR 218 (330)
Q Consensus 188 aSLEyAV~~L~Vk~IVV~GHS~CGav~Aa~~ 218 (330)
..|.-.+..++.+.++++|||-.|.+...+.
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 3444456688899999999999998875443
No 62
>PRK14420 acylphosphatase; Provisional
Probab=22.04 E-value=1.1e+02 Score=24.36 Aligned_cols=20 Identities=15% Similarity=-0.160 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+.+..+|.|+..-.
T Consensus 28 ~gl~G~V~N~~dG~Vei~~q 47 (91)
T PRK14420 28 RKLTGWVKNRDDGTVEIEAE 47 (91)
T ss_pred cCCEEEEEECCCCcEEEEEE
Confidence 67999999999998886543
No 63
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=21.63 E-value=1.8e+02 Score=25.42 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=29.7
Q ss_pred hCCCCCcEEEEeccCCcCCCCCCCCcchhhHHHHHHHhcCccEEEEeccCcchHH
Q 020134 159 LGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGI 213 (330)
Q Consensus 159 lg~~pGDlFVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHS~CGav 213 (330)
|.-.+||..+.++.=+-... ..|+.-+...|+++|||+|=.--.-|
T Consensus 83 l~~~~~~~v~~K~~~saF~~---------t~L~~~L~~~gi~~vvi~G~~t~~CV 128 (179)
T cd01015 83 LAPQEDEMVLVKKYASAFFG---------TSLAATLTARGVDTLIVAGCSTSGCI 128 (179)
T ss_pred cCCCCCCEEEecCccCCccC---------CcHHHHHHHcCCCEEEEeeecccHhH
Confidence 34467887666664222211 25787788999999999996543333
No 64
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=21.06 E-value=53 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.0
Q ss_pred EEEEEEEEcCCCeEEEE
Q 020134 288 FIHGGYYDLLNCTFEKW 304 (330)
Q Consensus 288 ~VhG~vYDi~tG~ve~~ 304 (330)
..|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 48999999999998765
No 65
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.61 E-value=52 Score=29.53 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.7
Q ss_pred cEEEEeccCcchHH
Q 020134 200 QNILVIGHSDCGGI 213 (330)
Q Consensus 200 k~IVV~GHS~CGav 213 (330)
++|+|+||.++|=-
T Consensus 1 rnv~iiG~~~~GKT 14 (213)
T cd04167 1 RNVAIAGHLHHGKT 14 (213)
T ss_pred CcEEEEcCCCCCHH
Confidence 47999999999943
No 66
>PRK14438 acylphosphatase; Provisional
Probab=20.09 E-value=1.3e+02 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 020134 287 LFIHGGYYDLLNCTFEKWTL 306 (330)
Q Consensus 287 L~VhG~vYDi~tG~ve~~~~ 306 (330)
+.|.||+-+..+|.|+.+-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~q 48 (91)
T PRK14438 29 LNVSGWVKNLPNGSVQGCFE 48 (91)
T ss_pred cCCEEEEEECCCCEEEEEEE
Confidence 67999999999998886543
Done!