BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020135
(330 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis]
gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis]
Length = 422
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/331 (74%), Positives = 284/331 (85%), Gaps = 11/331 (3%)
Query: 2 RKVNWAIALHLGALRQLESSSSIS-HRNPLLHQRWFVQRAAATPSLSNFRSYSTEM---L 57
R +NWAI +QL+ SS+I+ H++ + + F+ A A S R+YSTE+ L
Sbjct: 5 RGLNWAI-------KQLQFSSAITWHQSHSIRESSFLGSAIANASHLFSRAYSTELQSHL 57
Query: 58 SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQ 117
S DLI+IMEQR+ AIE RSA LEN +++ EASPAEYS+ANKELRKLR + LISELR+ Q
Sbjct: 58 SPDLIRIMEQRLSAIEHRSAYLENFIDKLEASPAEYSRANKELRKLRRPVELISELRSIQ 117
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
KEIDGL+SL+ EC EDK M+DMA EEL AI+EEKRLQ++LLKSLLP DDADERDCILEV
Sbjct: 118 KEIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDADERDCILEV 177
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEASLF++D+F+MYERYSQKKGWKFEVV +TESDL+GYKEASAAISG GV+GKL
Sbjct: 178 RAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAISGAGVFGKL 237
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQH
Sbjct: 238 KFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQH 297
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
ANTTNSAVRVTH+PTGMT+SIQDERSQHM K
Sbjct: 298 ANTTNSAVRVTHLPTGMTVSIQDERSQHMNK 328
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera]
gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera]
Length = 392
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/291 (80%), Positives = 261/291 (89%), Gaps = 4/291 (1%)
Query: 41 AATPSLSNFRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKAN 97
A TP S R YSTE+ LS DLI IMEQR+ AIE RSA L++ +N+PEASP EY++AN
Sbjct: 2 AKTP-FSFIRPYSTELQPQLSTDLIGIMEQRLSAIEHRSAYLQDFINRPEASPVEYARAN 60
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KELRKLR S+ I+ELR KQKEIDGLKSL+ ECSEDKDML+MA EEL A +EEKRLQ+L
Sbjct: 61 KELRKLRSSIEHITELRNKQKEIDGLKSLMAECSEDKDMLNMAAEELGQAAEEEKRLQNL 120
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
LLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKFEVV +TESD
Sbjct: 121 LLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFEVVDITESD 180
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
L+GYKEAS AISG GVYGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+
Sbjct: 181 LKGYKEASGAISGSGVYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQ 240
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
LRNEDLRIDTYRSGGSGGQHANTTNSAVR+THIP+GMT++IQDERSQHM K
Sbjct: 241 LRNEDLRIDTYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNK 291
>gi|449435146|ref|XP_004135356.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
gi|449503299|ref|XP_004161933.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
Length = 426
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/322 (71%), Positives = 272/322 (84%), Gaps = 16/322 (4%)
Query: 14 ALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNF--RSYS-----TEMLSNDLIKIME 66
AL SS I+ +NPLL + + LS+ R YS ++ LS +LIKIME
Sbjct: 18 ALHCRNDSSGIT-KNPLL--------SLPSDPLSSLSLRFYSKGEVQSQQLSMELIKIME 68
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
QR+ AIE R+ L N++N+PEA PAEY+KANKEL+KLRD+M+LI+ELR+KQKEI+GL++L
Sbjct: 69 QRLTAIELRNTFLLNIINRPEAPPAEYAKANKELKKLRDTMNLITELRSKQKEINGLRTL 128
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E SED+DM DMATEEL A++EEKRLQ LLKSLLP+DDADERD ILEVRAGTGG+EA
Sbjct: 129 MEESSEDRDMFDMATEELEQAVEEEKRLQQFLLKSLLPRDDADERDSILEVRAGTGGDEA 188
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
SLFA+D+FKMYERY+QKKGWKFEVV +TESDL+GYKEA AAISG GVYG+LKFESGIHRV
Sbjct: 189 SLFAMDIFKMYERYAQKKGWKFEVVDITESDLKGYKEAIAAISGAGVYGRLKFESGIHRV 248
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP+TEK+GRVHTSA+SVAILPQADEVDV L+NEDLRIDT+RSGGSGGQHANTTNSAVR
Sbjct: 249 QRVPVTEKAGRVHTSAISVAILPQADEVDVELKNEDLRIDTFRSGGSGGQHANTTNSAVR 308
Query: 307 VTHIPTGMTISIQDERSQHMVK 328
V H+PTG+T++IQDERSQHM K
Sbjct: 309 VIHVPTGLTVTIQDERSQHMNK 330
>gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa]
gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/264 (83%), Positives = 245/264 (92%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
MEQR+ AIE RSACLEN +NQPEASP E+S+ANKELRKLR SM LI+ LRTKQKEIDGL+
Sbjct: 1 MEQRLSAIEHRSACLENFMNQPEASPTEFSRANKELRKLRGSMELITYLRTKQKEIDGLR 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
SL+ EC EDKDMLDMA EEL A++EEKRLQ+LLLKSLLP+DDADERDCILEVRAG+GGE
Sbjct: 61 SLMTECPEDKDMLDMANEELSQAMEEEKRLQNLLLKSLLPRDDADERDCILEVRAGSGGE 120
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA+D+FKMYER+SQ GWKFEVV +TESDL+GYKEASAAISG V+GKLKFESGIH
Sbjct: 121 EASLFAMDIFKMYERFSQNNGWKFEVVYITESDLKGYKEASAAISGADVFGKLKFESGIH 180
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TEK GRVHTSAVSVAILPQADEVD++LRNEDLRIDTYRSGGSGGQHANTTNSA
Sbjct: 181 RVQRVPVTEKLGRVHTSAVSVAILPQADEVDLQLRNEDLRIDTYRSGGSGGQHANTTNSA 240
Query: 305 VRVTHIPTGMTISIQDERSQHMVK 328
VR+TH+PTG+T+SIQDERSQHM K
Sbjct: 241 VRITHLPTGITVSIQDERSQHMNK 264
>gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp.
lyrata]
gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp.
lyrata]
Length = 410
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/281 (78%), Positives = 253/281 (90%), Gaps = 3/281 (1%)
Query: 49 FRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRD 105
R Y+T M LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRD
Sbjct: 34 IRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNALLQKLINQPEYSPEEFSRANKELRKLRD 93
Query: 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPK 165
SM LI++LR KQKEIDGLKSL+ E S+DKDMLDMA EL A++EEKRLQ+LLLKSLLPK
Sbjct: 94 SMFLINDLRAKQKEIDGLKSLVSESSDDKDMLDMAVSELDEAVEEEKRLQTLLLKSLLPK 153
Query: 166 DDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225
D+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKK WKF++V +TESD++GYKEAS
Sbjct: 154 DEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKAWKFDIVDITESDMKGYKEAS 213
Query: 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRI 285
AAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNEDLRI
Sbjct: 214 AAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRI 273
Query: 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
DTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHM
Sbjct: 274 DTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 314
>gi|42569997|ref|NP_182225.3| Peptide chain release factor 1 [Arabidopsis thaliana]
gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana]
gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana]
Length = 413
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/281 (78%), Positives = 254/281 (90%), Gaps = 3/281 (1%)
Query: 49 FRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRD 105
R Y+T M LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRD
Sbjct: 37 IRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRD 96
Query: 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPK 165
SM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A EL A++EEKRLQ+LLLKSLLPK
Sbjct: 97 SMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPK 156
Query: 166 DDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225
D+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V +TESD++GYKEAS
Sbjct: 157 DEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEAS 216
Query: 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRI 285
AAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNEDLRI
Sbjct: 217 AAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRI 276
Query: 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
DTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHM
Sbjct: 277 DTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 317
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max]
Length = 415
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/333 (68%), Positives = 270/333 (81%), Gaps = 26/333 (7%)
Query: 5 NWAIALHLGALRQLESSS------SISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEM-- 56
N+ I +L LR +S+ + HR P RSYS E+
Sbjct: 6 NFIICRYLSRLRNQFNSNFEFPLPNFRHRAPFF-----------------LRSYSAEVPA 48
Query: 57 -LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT 115
LS +L+ IMEQR+ AIE R++CL N +NQPEASP+EY++ANKELRKL S+ LI ELR
Sbjct: 49 QLSPELLNIMEQRLSAIEYRTSCLNNFLNQPEASPSEYARANKELRKLSGSVDLIKELRA 108
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
KQKEIDGLKSL+ ECSEDKDML+MATEE+ A++EE++LQ+LLLKSLLPKDDADERDCIL
Sbjct: 109 KQKEIDGLKSLMAECSEDKDMLNMATEEMGQAVEEERKLQNLLLKSLLPKDDADERDCIL 168
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
EVRAGTGGEEASLFA+D+F+MYE+Y+ +KGWKFEVV + +SD +GYKEASAAI+G GV+
Sbjct: 169 EVRAGTGGEEASLFAMDIFRMYEKYALEKGWKFEVVDIAQSDHKGYKEASAAIAGDGVFR 228
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESGIHRVQRVP+TEKSGR+HTSAVSVAILPQADEVDV+L+NEDLRIDTYRSGGSGG
Sbjct: 229 KLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDLRIDTYRSGGSGG 288
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
QHANTTNSAVRVTHIPTG+ I+IQDERSQHM K
Sbjct: 289 QHANTTNSAVRVTHIPTGIMITIQDERSQHMNK 321
>gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana]
Length = 395
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/295 (73%), Positives = 249/295 (84%), Gaps = 25/295 (8%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRKLRDSM LI++LR K
Sbjct: 5 LSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSMLLINDLRAK 64
Query: 117 QK-------------------------EIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
QK EIDGLKSL+ E S+DKDMLD+A EL A++EE
Sbjct: 65 QKVVNLLYRIIYLFQRSSLIRFTFCWQEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEE 124
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
KRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V
Sbjct: 125 KRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIV 184
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+TESD++GYKEASAAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQA
Sbjct: 185 DITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQA 244
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
DEVDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHM
Sbjct: 245 DEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHM 299
>gi|356571023|ref|XP_003553681.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1-like
[Glycine max]
Length = 379
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/272 (75%), Positives = 239/272 (87%), Gaps = 2/272 (0%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
LS +L+ IMEQR+ AIE +A N +NQPEASP+EY++AN EL KL S+ LI ELR K
Sbjct: 22 LSPELLNIMEQRLSAIEYMTASFNNFLNQPEASPSEYARANXELWKLSGSIDLIKELRGK 81
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
QKEIDGLKSLI ECSEDKDML+MATEE+ A++EE+RLQ+ LLKSLLPKDDAD+RDCILE
Sbjct: 82 QKEIDGLKSLIAECSEDKDMLNMATEEIGQAVEEERRLQNFLLKSLLPKDDADDRDCILE 141
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
VR GTGGEEASLFA+D+F+MYE+Y+ K GWKFEVV + +SDL+GY EASAAI+GVGV+GK
Sbjct: 142 VRPGTGGEEASLFAMDIFRMYEKYALKNGWKFEVVDIAQSDLKGYNEASAAIAGVGVFGK 201
Query: 237 LKFESGIHRVQ--RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
LKFESGIHRVQ R+ +TEKSG ++T+AVSVAILPQADEVDV+L++EDLRIDTYRSGGSG
Sbjct: 202 LKFESGIHRVQSLRILVTEKSGCINTNAVSVAILPQADEVDVQLKHEDLRIDTYRSGGSG 261
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
GQHANTTNSAVRVTHIPTG I+IQDE SQHM
Sbjct: 262 GQHANTTNSAVRVTHIPTGTMITIQDECSQHM 293
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group]
gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group]
Length = 368
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/275 (70%), Positives = 232/275 (84%)
Query: 54 TEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +L+ +MEQR+ IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I EL
Sbjct: 2 NQQLPANLVGVMEQRMKLIEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEEL 61
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R+KQ+EI+GLKSL+ E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDC
Sbjct: 62 RSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDC 121
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G
Sbjct: 122 ILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGA 181
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
YGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGS
Sbjct: 182 YGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGS 241
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GGQ NTT+SAVR+TH+PTG ++IQDERSQH K
Sbjct: 242 GGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNK 276
>gi|145362209|ref|NP_973706.2| Peptide chain release factor 1 [Arabidopsis thaliana]
gi|110735990|dbj|BAE99969.1| putative peptide chain release factor [Arabidopsis thaliana]
gi|330255694|gb|AEC10788.1| Peptide chain release factor 1 [Arabidopsis thaliana]
Length = 256
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 226/242 (93%)
Query: 85 QPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144
QPE SP E+S+ANKELRKLRDSM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A EL
Sbjct: 11 QPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGEL 70
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
A++EEKRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKK
Sbjct: 71 DEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKK 130
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GWKF++V +TESD++GYKEASAAI G VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+S
Sbjct: 131 GWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAIS 190
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAILPQADEVDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQ
Sbjct: 191 VAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQ 250
Query: 325 HM 326
HM
Sbjct: 251 HM 252
>gi|242089427|ref|XP_002440546.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
gi|241945831|gb|EES18976.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
Length = 416
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/291 (68%), Positives = 242/291 (83%), Gaps = 1/291 (0%)
Query: 38 QRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKAN 97
+R + P L + S ++ +N L++IMEQR+ IE+RSA L+ +NQP ASP EYS+AN
Sbjct: 35 RRPSPPPRLYSTAEMSQQLPAN-LVQIMEQRMKLIEQRSAYLQEQINQPAASPEEYSRAN 93
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KE RKL +M LI ELR+K++EI+GLKSL+ E+KDM +MA EEL A++ EKRLQ
Sbjct: 94 KEFRKLESTMELIKELRSKREEIEGLKSLVTNAREEKDMREMAAEELLEAVEVEKRLQHE 153
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ + ES
Sbjct: 154 LFRSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESA 213
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
++GYKEAS ISG G +GKLKFESGIHRVQRVP+TEKSGRVHTSAVSVA+LPQADEVDV+
Sbjct: 214 VKGYKEASGTISGPGAFGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQ 273
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQDERSQHM K
Sbjct: 274 LRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNK 324
>gi|48926665|gb|AAT47454.1| putative peptide chain release factor [Oryza sativa Japonica Group]
Length = 350
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/257 (73%), Positives = 221/257 (85%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I ELR+KQ+EI+GLKSL+
Sbjct: 2 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 61
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+
Sbjct: 62 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 121
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G YGKLKFESGIHRVQRVP+
Sbjct: 122 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 181
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+TH+P
Sbjct: 182 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 241
Query: 312 TGMTISIQDERSQHMVK 328
TG ++IQDERSQH K
Sbjct: 242 TGTVVAIQDERSQHQNK 258
>gi|115462961|ref|NP_001055080.1| Os05g0277300 [Oryza sativa Japonica Group]
gi|113578631|dbj|BAF16994.1| Os05g0277300, partial [Oryza sativa Japonica Group]
Length = 349
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/257 (73%), Positives = 221/257 (85%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IE+RSA L+ +NQP+ASP EYS+ANKEL KL +M +I ELR+KQ+EI+GLKSL+
Sbjct: 1 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 60
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E+KD +MA +EL A++EEK+LQ L +SLLPKD+ADERDCILEVRAGTGGEEASLFA+
Sbjct: 61 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 120
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS ISG G YGKLKFESGIHRVQRVP+
Sbjct: 121 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 180
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+TH+P
Sbjct: 181 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 240
Query: 312 TGMTISIQDERSQHMVK 328
TG ++IQDERSQH K
Sbjct: 241 TGTVVAIQDERSQHQNK 257
>gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera]
Length = 1542
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/299 (70%), Positives = 235/299 (78%), Gaps = 29/299 (9%)
Query: 33 QRWFVQRAAATPSLSNFRSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS 89
Q F+ A S R YSTE+ LS DLI IMEQR+ AIE RSA L++ +N+PEAS
Sbjct: 1176 QNGFLHSTMAKTPFSFIRPYSTELQPQLSTDLIGIMEQRLSAIEHRSAYLQDFINRPEAS 1235
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
P EY++ANKELRKLR S+ I+ELR KQKEIDGLKSL+ ECSEDKDML+MA EEL A
Sbjct: 1236 PVEYARANKELRKLRSSIEHITELRNKQKEIDGLKSLMAECSEDKDMLNMAAEELGQAAG 1295
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
EEKRLQ+LLLKSLLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKFE
Sbjct: 1296 EEKRLQNLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFE 1355
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
VV +TESDL+GYKEAS AISG GVYGKLKFESGIHRVQ
Sbjct: 1356 VVDITESDLKGYKEASGAISGSGVYGKLKFESGIHRVQ---------------------- 1393
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
VDV+LRNEDLRIDTYRSGGSGGQHANTTNSAVR+THIP+GMT++IQDERSQHM K
Sbjct: 1394 ----VDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRITHIPSGMTVAIQDERSQHMNK 1448
>gi|226492409|ref|NP_001142228.1| uncharacterized protein LOC100274396 [Zea mays]
gi|194707706|gb|ACF87937.1| unknown [Zea mays]
gi|413917591|gb|AFW57523.1| peptide chain release factor 1 [Zea mays]
Length = 416
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/309 (65%), Positives = 249/309 (80%), Gaps = 12/309 (3%)
Query: 20 SSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACL 79
+S ++ R P L R++ +T +S + L +L++IMEQR+ IE+RSA L
Sbjct: 28 ASPPVAWRRPCLPPRFY-----STAEMS-------QQLPANLVEIMEQRMKLIEQRSAYL 75
Query: 80 ENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
+ +NQP ASP EYS+ANKE RKL +M LI +LR+KQ+EI+GLKSL+ E+KDM +M
Sbjct: 76 QEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGLKSLVANDHEEKDMREM 135
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRAGTGGEEASLFA+D+F+MYE+
Sbjct: 136 AEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGGEEASLFAMDIFRMYEK 195
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKFESGIHRVQRVP TEKSGR+H
Sbjct: 196 YAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGIHRVQRVPATEKSGRMH 255
Query: 260 TSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319
TSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQ
Sbjct: 256 TSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQ 315
Query: 320 DERSQHMVK 328
DERSQHM K
Sbjct: 316 DERSQHMNK 324
>gi|413917590|gb|AFW57522.1| peptide chain release factor 1 [Zea mays]
Length = 368
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/275 (70%), Positives = 236/275 (85%)
Query: 54 TEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
++ L +L++IMEQR+ IE+RSA L+ +NQP ASP EYS+ANKE RKL +M LI +L
Sbjct: 2 SQQLPANLVEIMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDL 61
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R+KQ+EI+GLKSL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DC
Sbjct: 62 RSKQEEIEGLKSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDC 121
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G
Sbjct: 122 ILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGA 181
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
+GKLKFESGIHRVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGS
Sbjct: 182 FGKLKFESGIHRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGS 241
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GGQ NTT+SAVR+THIPTG ++IQDERSQHM K
Sbjct: 242 GGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNK 276
>gi|357134763|ref|XP_003568985.1| PREDICTED: peptide chain release factor 1-like [Brachypodium
distachyon]
Length = 417
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/287 (69%), Positives = 239/287 (83%), Gaps = 4/287 (1%)
Query: 46 LSNFRSYST----EMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELR 101
L++ R YST + L +L++IMEQR+ IE+RSA L+ +NQP ASP EYS+ANKE
Sbjct: 39 LTSPRLYSTADTSQQLPANLVQIMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFH 98
Query: 102 KLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161
KL +M LI EL++KQKEI+GLKSL+ E+KDM +MA EEL AI+EEK+LQ L ++
Sbjct: 99 KLESTMELIKELQSKQKEIEGLKSLVTNSVEEKDMREMAAEELLEAIEEEKQLQHGLFRT 158
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+V+ + ES +GY
Sbjct: 159 LLPKDEADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDVLDLMESVSKGY 218
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KEAS ISG G YGKLKFESG+HRVQRVP+TEKSGRVHTSAVSVA+LPQADEVDV+LRNE
Sbjct: 219 KEASGTISGPGAYGKLKFESGVHRVQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQLRNE 278
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
DLRIDTYRSGGSGGQ NTT+SAVR+TH+PTG ++IQDERSQH K
Sbjct: 279 DLRIDTYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNK 325
>gi|363543169|ref|NP_001241798.1| peptide chain release factor 1 [Zea mays]
gi|195650889|gb|ACG44912.1| peptide chain release factor 1 [Zea mays]
Length = 356
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/264 (72%), Positives = 228/264 (86%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
MEQR+ IE+RSA L+ +NQP ASP EYS+ANKE RKL +M LI +LR+KQ+EI+GLK
Sbjct: 1 MEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGLK 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
SL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRAGTGGE
Sbjct: 61 SLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGGE 120
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKFESGIH
Sbjct: 121 EASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGIH 180
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SA
Sbjct: 181 RVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSA 240
Query: 305 VRVTHIPTGMTISIQDERSQHMVK 328
VR+THIPTG ++IQDERSQHM K
Sbjct: 241 VRITHIPTGTVVAIQDERSQHMNK 264
>gi|215764957|dbj|BAG86654.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 314
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/222 (74%), Positives = 193/222 (86%)
Query: 107 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKD 166
M +I ELR+KQ+EI+GLKSL+ E+KD +MA +EL A++EEK+LQ L +SLLPKD
Sbjct: 1 MDMIEELRSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKD 60
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
+ADERDCILEVRAGTGGEEASLFA+D+FKMYE+YSQK GWKF+ + + ES L+GYKEAS
Sbjct: 61 EADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASG 120
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
ISG G YGKLKFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRID
Sbjct: 121 TISGPGAYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRID 180
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
TYRSGGSGGQ NTT+SAVR+TH+PTG ++IQDERSQH K
Sbjct: 181 TYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNK 222
>gi|168056816|ref|XP_001780414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668174|gb|EDQ54787.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 362
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/267 (64%), Positives = 218/267 (81%), Gaps = 2/267 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
++ I+E+ +LAIE R + L +++ A P E + +KEL KL D M I+ L+ +KEI
Sbjct: 1 MLSIVERGMLAIEHRHSRLNQALSESAACPDEIIRLSKELSKLEDLMACITSLKNTRKEI 60
Query: 121 DGLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+GLK LI E +ED+DM A EEL ++ E + LQ +LL +LPKD+AD R CILEVRA
Sbjct: 61 EGLKMLIEESAEDEDMKQAAAEELRSVSNLETEDLQRMLLL-MLPKDEADSRGCILEVRA 119
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EASLFA D+F+MYERY+QKK W FEV+ +T+++ +GYKEASA+I+G GVYGKLKF
Sbjct: 120 GTGGDEASLFASDIFRMYERYAQKKLWSFEVLSITQTNSKGYKEASASITGDGVYGKLKF 179
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TEKSGRVHTSA SVA+LPQADEVDV++RNEDLRIDTYR+GG+GGQHAN
Sbjct: 180 ESGVHRVQRVPVTEKSGRVHTSAASVAVLPQADEVDVQMRNEDLRIDTYRAGGAGGQHAN 239
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHM 326
TT+SAVRVTH+PTG+ I+IQDERSQHM
Sbjct: 240 TTSSAVRVTHLPTGIVIAIQDERSQHM 266
>gi|357511537|ref|XP_003626057.1| Peptide chain release factor [Medicago truncatula]
gi|355501072|gb|AES82275.1| Peptide chain release factor [Medicago truncatula]
Length = 526
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 194/362 (53%), Positives = 241/362 (66%), Gaps = 76/362 (20%)
Query: 45 SLSNFRS--YSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKE 99
SL NFR YS+E+ +S DL+KIMEQR AI+ R+ CL+NL+NQPE S +EY++ANKE
Sbjct: 27 SLPNFRFRLYSSEVEPEISPDLLKIMEQRFSAIKHRATCLDNLINQPETSQSEYARANKE 86
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKD------MLDMATEELCLAID---- 149
LRKL S+ LI++L+ KQK I +++I S + D L++ +L L++
Sbjct: 87 LRKLSGSVQLINQLKAKQKVILNSETVIAPPSTNTDTSTPVFTLEVKFRQLGLSVKHSST 146
Query: 150 ---EEKRLQSLL-----------LKSLL-------------------------------- 163
E RL + LKSL+
Sbjct: 147 DNAEIVRLDTFTQVRTRDLEIDGLKSLMNESSEDKDMLNMATEEMGQAIEEERKLQNLLL 206
Query: 164 ----PKDDADERDCILEVRAG-----------TGGEEASLFAVDVFKMYERYSQKKGWKF 208
PKDDADERDCILEVRAG TGGEEASLFA+++FKMYE+Y+ KGWKF
Sbjct: 207 KSLLPKDDADERDCILEVRAGKLSLLKMEIYCTGGEEASLFAMNIFKMYEKYAHNKGWKF 266
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
+VV + +SD++G+KEA+AAI GVGV+GKLKFESGIHRVQRVP+TEK GRVHTSAVSVAIL
Sbjct: 267 DVVDIAQSDMKGFKEATAAILGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAIL 326
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
PQADEVDV+L+ EDL+ID YRSGGSGGQHAN T+SAVR+THIPTG+ I+IQDERSQHMV
Sbjct: 327 PQADEVDVQLKKEDLKIDFYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMVN 386
Query: 329 DS 330
S
Sbjct: 387 YS 388
>gi|224035189|gb|ACN36670.1| unknown [Zea mays]
Length = 301
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 156/209 (74%), Positives = 185/209 (88%)
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
++GLKSL+ E+KDM +MA EEL +A++EEKRLQ L +SLLPKD+ADE+DCILEVRA
Sbjct: 1 MEGLKSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRA 60
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+ + ES ++GYKEAS ISG G +GKLKF
Sbjct: 61 GTGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKF 120
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESGIHRVQRVP TEKSGR+HTSAVSVA+LPQADEVDV+LRNEDLRIDTYRSGGSGGQ N
Sbjct: 121 ESGIHRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVN 180
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVK 328
TT+SAVR+THIPTG ++IQDERSQHM K
Sbjct: 181 TTDSAVRITHIPTGTVVAIQDERSQHMNK 209
>gi|302785656|ref|XP_002974599.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii]
gi|300157494|gb|EFJ24119.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii]
Length = 386
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/277 (55%), Positives = 205/277 (74%), Gaps = 8/277 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + E K NKELRKL S+ +I LR K
Sbjct: 12 IPDDILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAK 71
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+AD R CILE
Sbjct: 72 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLKLIPKDEADSRGCILE 131
Query: 177 VRA--------GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T +D RGYKEASA I
Sbjct: 132 ASCLICFIYLLGAGGDEASIFASDLFKMYEKYAANNSWRFEVLSITTTDTRGYKEASAVI 191
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
SG VYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTY
Sbjct: 192 SGDDVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTY 251
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
R+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH
Sbjct: 252 RAGGAGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQH 288
>gi|302759765|ref|XP_002963305.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii]
gi|300168573|gb|EFJ35176.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii]
Length = 927
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 203/272 (74%), Gaps = 8/272 (2%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + E K NKELRKL S+ +I LR K
Sbjct: 12 IPDDILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAK 71
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+AD R
Sbjct: 72 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEADSR----- 126
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T +D RGYKEASA ISG GVYG
Sbjct: 127 ---GAGGDEASIFASDLFKMYEKYTANNSWRFEVLSITTTDTRGYKEASAVISGDGVYGA 183
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTYR+GG+GGQ
Sbjct: 184 LKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGGAGGQ 243
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
H NTT SAVRVTH PTG+ ++IQDERSQH K
Sbjct: 244 HVNTTCSAVRVTHAPTGIVVAIQDERSQHKNK 275
>gi|413917589|gb|AFW57521.1| hypothetical protein ZEAMMB73_731523 [Zea mays]
Length = 285
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 139/177 (78%), Positives = 160/177 (90%)
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
KRLQ L +SLLPKD+ADE+DCILEVRAGTGGEEASLFA+D+F+MYE+Y+QK GWKF+V+
Sbjct: 17 KRLQHELFRSLLPKDEADEKDCILEVRAGTGGEEASLFAMDIFRMYEKYAQKNGWKFDVI 76
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ES ++GYKEAS ISG G +GKLKFESGIHRVQRVP TEKSGR+HTSAVSVA+LPQA
Sbjct: 77 DIMESAVKGYKEASGTISGPGAFGKLKFESGIHRVQRVPATEKSGRMHTSAVSVAVLPQA 136
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
DEVDV+LRNEDLRIDTYRSGGSGGQ NTT+SAVR+THIPTG ++IQDERSQHM K
Sbjct: 137 DEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHIPTGTVVAIQDERSQHMNK 193
>gi|339319955|ref|YP_004679650.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
gi|338226080|gb|AEI88964.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
Length = 359
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/265 (51%), Positives = 196/265 (73%), Gaps = 1/265 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
E+R+ I R +EN++ PEA S ++++K KE +L D +HLI+ ++EI L
Sbjct: 3 FEERLAKIIERYKYIENVLLAPEAMSSSDFAKLGKERAELSDVVHLINSYTQLKQEIADL 62
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++ I E + D D DMA EEL L ++ +++ L +LLPKD +++ ILE+RAGTGG
Sbjct: 63 EAAISEPNADIDFKDMALEELPLLQEKNEQVLHNLKLALLPKDADNDKGAILEIRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA +F+MY+RY++ K WKFE++ ++E+DL GYKEAS +ISG GV+ +LK+ESG+
Sbjct: 123 DEAALFAYVLFRMYQRYAESKRWKFEILSISETDLEGYKEASVSISGKGVFARLKYESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE SGRVHTSA +VA+LP+A+EVD+ + +DL+ID YR+ G+GGQH NTT+S
Sbjct: 183 HRVQRVPETETSGRVHTSAATVAVLPEAEEVDITIEEKDLKIDVYRASGAGGQHVNTTDS 242
Query: 304 AVRVTHIPTGMTISIQDERSQHMVK 328
AVR+THIPTG+ + QDE+SQH K
Sbjct: 243 AVRITHIPTGIVVCQQDEKSQHKNK 267
>gi|302811530|ref|XP_002987454.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii]
gi|300144860|gb|EFJ11541.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii]
Length = 505
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 177/234 (75%), Gaps = 8/234 (3%)
Query: 95 KANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154
K NKELR L S+ +I LR K+KE+ GLK L+ E ED++M +A+ EL A E +
Sbjct: 26 KMNKELRNLDYSVDMIKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDA 85
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
Q +L L+PKD+AD R G GG+EAS+FA D+FKMYE+Y+ W+FEV+ +T
Sbjct: 86 QHDVLLELIPKDEADSR--------GAGGDEASIFASDLFKMYEKYAANNSWRFEVLSIT 137
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
+D R YKEASAAISG GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+E+
Sbjct: 138 TTDTRCYKEASAAISGDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEI 197
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
DV +RN++++IDTYR+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH K
Sbjct: 198 DVEIRNDEIKIDTYRAGGAGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQHKNK 251
>gi|302759755|ref|XP_002963300.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii]
gi|300168568|gb|EFJ35171.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii]
Length = 509
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/220 (59%), Positives = 169/220 (76%), Gaps = 8/220 (3%)
Query: 109 LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDA 168
+I LR K+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+A
Sbjct: 1 MIKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEA 60
Query: 169 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
D R G GG+EAS+FA D+FKMY++Y+ W+FEV+ +T +D RGYKEASAAI
Sbjct: 61 DSR--------GAGGDEASIFASDLFKMYDKYAANNSWRFEVLSITTTDTRGYKEASAAI 112
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
SG GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+E+DV +RN++++IDTY
Sbjct: 113 SGDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEIDVEIRNDEIKIDTY 172
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
R+GG+GGQH NTT SAVRVTH PTG+ ++IQDERSQH K
Sbjct: 173 RAGGAGGQHVNTTCSAVRVTHTPTGIVVAIQDERSQHKNK 212
>gi|384250750|gb|EIE24229.1| protein chain release factor A [Coccomyxa subellipsoidea C-169]
Length = 345
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 180/247 (72%), Gaps = 12/247 (4%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E + N EL +L ++ + L+ E GL+ L ED+DM +A EE + ++
Sbjct: 8 ELTALNVELGELTPAVEAYNALQRLLDEAKGLEGLT--SGEDEDMRKLAREEQQVLQEQV 65
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ LL LLP+D+ADER +LEVRAGTGG+EA+LFA D+F+MY+R+++ + WKFEV+
Sbjct: 66 PALEQALLDQLLPRDEADERGAVLEVRAGTGGDEAALFAGDLFRMYQRFAELRRWKFEVL 125
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ESD+ G+K ASA ++G G YG LK+ESGIHRVQRVP+TE SGRVHTSA SVA++PQA
Sbjct: 126 EMAESDVGGFKLASANVAGRGAYGSLKWESGIHRVQRVPVTESSGRVHTSAASVAVMPQA 185
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI----------QDE 321
DEVDV +++EDLRIDTYR+GG+GGQH NTTNSAVR+THIP+G+ ++I QDE
Sbjct: 186 DEVDVSVKDEDLRIDTYRAGGAGGQHVNTTNSAVRITHIPSGLVVAIQARHLVDAWWQDE 245
Query: 322 RSQHMVK 328
RSQH K
Sbjct: 246 RSQHKNK 252
>gi|383312620|ref|YP_005365421.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|378931280|gb|AFC69789.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 355
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 192/274 (70%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L+KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLVKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLSKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIADKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|302759761|ref|XP_002963303.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii]
gi|300168571|gb|EFJ35174.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii]
Length = 391
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 188/272 (69%), Gaps = 14/272 (5%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
+ +D+++I+E+R+++IE R ACL + +P + + K NKELR L S+ +I LR K
Sbjct: 43 IPDDILRILEKRMISIEDRHACLSEALLEPGIASEKLIKMNKELRNLDYSVDMIKALRAK 102
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE+ GLK L+ E ED++M +A+ EL A E + Q +L L+PKD+A
Sbjct: 103 EKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEA-------- 154
Query: 177 VRAGTGGEEASLFAVDVFKM------YERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
R+ G D+F + Y++Y+ W+FEV+ +T +D RGYKEASAAISG
Sbjct: 155 ARSRAGKCSLMCLMFDMFHLIFRSWRYDKYAANNSWRFEVLSITTTDTRGYKEASAAISG 214
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GVYG LKFESG+HRVQRVP+TEK+GR+HTS SVAILP+A+EVDV +RN++++IDTYR+
Sbjct: 215 DGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRA 274
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
GG+GGQH NTT SAVRVTH PTG+ ++IQD R
Sbjct: 275 GGAGGQHVNTTCSAVRVTHAPTGIVVAIQDTR 306
>gi|229586782|ref|YP_002845283.1| peptide chain release factor 1 [Rickettsia africae ESF-5]
gi|259585242|sp|C3PNN0.1|RF1_RICAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|228021832|gb|ACP53540.1| Peptide chain release factor RF-1 [Rickettsia africae ESF-5]
Length = 355
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|34580401|ref|ZP_00141881.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|383484025|ref|YP_005392938.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
gi|28261786|gb|EAA25290.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|378936379|gb|AFC74879.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
Length = 355
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|374319360|ref|YP_005065859.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|383751342|ref|YP_005426443.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
gi|360041909|gb|AEV92291.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|379774356|gb|AFD19712.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
Length = 355
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENALPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|157828568|ref|YP_001494810.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933282|ref|YP_001650071.1| peptide chain release factor 1 [Rickettsia rickettsii str. Iowa]
gi|378721380|ref|YP_005286267.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|378722726|ref|YP_005287612.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|378724083|ref|YP_005288967.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
gi|379016361|ref|YP_005292596.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|379017869|ref|YP_005294104.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|379018974|ref|YP_005295208.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|379712443|ref|YP_005300782.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|166223598|sp|A8GSC7.1|RF1_RICRS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039987|sp|B0BXT9.1|RF1_RICRO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157801049|gb|ABV76302.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908369|gb|ABY72665.1| bacterial peptide chain release factor 1 (RF-1) [Rickettsia
rickettsii str. Iowa]
gi|376324885|gb|AFB22125.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|376326404|gb|AFB23643.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|376327750|gb|AFB24988.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|376329088|gb|AFB26325.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|376330435|gb|AFB27671.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|376331554|gb|AFB28788.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|376333098|gb|AFB30331.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
Length = 355
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|402703521|ref|ZP_10851500.1| peptide chain release factor 1 [Rickettsia helvetica C9P9]
Length = 355
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 176/237 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVIEKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 SKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|341583910|ref|YP_004764401.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
gi|340808136|gb|AEK74724.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
Length = 355
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|238650227|ref|YP_002916078.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
gi|259585243|sp|C4K0C9.1|RF1_RICPU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238624325|gb|ACR47031.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
Length = 355
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 190/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNTLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|157964580|ref|YP_001499404.1| peptide chain release factor 1 [Rickettsia massiliae MTU5]
gi|379713807|ref|YP_005302145.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
gi|166977368|sp|A8F1S1.1|RF1_RICM5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157844356|gb|ABV84857.1| Peptide chain release factor RF-1 [Rickettsia massiliae MTU5]
gi|376334453|gb|AFB31685.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
Length = 361
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|350273567|ref|YP_004884880.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
gi|348592780|dbj|BAK96741.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
Length = 355
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 190/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E+ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELKEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|15892685|ref|NP_360399.1| peptide chain release factor 1 [Rickettsia conorii str. Malish 7]
gi|20139335|sp|Q92HK9.1|RF1_RICCN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15619858|gb|AAL03300.1| peptide chain release factor RF-1 [Rickettsia conorii str. Malish
7]
Length = 355
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 190/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + E+ KA+KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWHFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|67459154|ref|YP_246778.1| peptide chain release factor 1 [Rickettsia felis URRWXCal2]
gi|75536414|sp|Q4ULG0.1|RF1_RICFE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|67004687|gb|AAY61613.1| Peptide chain release factor RF-1 [Rickettsia felis URRWXCal2]
Length = 355
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 176/237 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|383501663|ref|YP_005415022.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
gi|378932674|gb|AFC71179.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
Length = 355
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 176/237 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEDVVVKIKEYNKAKSELEEANNFKLEVGLDNTTLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADNKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|383481611|ref|YP_005390526.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933950|gb|AFC72453.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 361
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/274 (47%), Positives = 191/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ ++ E+ K +KE +L D + I E
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSAIMGDEFVKTSKEYAELEDVVAKIKEYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ E++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|157825817|ref|YP_001493537.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
gi|166223595|sp|A8GNQ4.1|RF1_RICAH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157799775|gb|ABV75029.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
Length = 355
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/237 (51%), Positives = 176/237 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ + E D L M +E+ + +
Sbjct: 29 EFVKASKEYAELEDVVVKIKEYNKAKSELEEANNFKLELGFDNATLAMIEDEIHILENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+EVD+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|344924573|ref|ZP_08778034.1| peptide chain release factor RF-1 [Candidatus Odyssella
thessalonicensis L13]
Length = 360
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/248 (50%), Positives = 181/248 (72%), Gaps = 1/248 (0%)
Query: 79 LENLVNQPEAS-PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L +++ + E S P E+ + +KE + + I E+R ++EI L+++I + D +M
Sbjct: 17 LRDILAKSEMSDPKEFGRLSKEYSDMTPVVEAIEEVRKTEREIQDLEAMIADKDMDAEMR 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+ A +EL ++ + + LLPKD+ADER+ ILEVRAGTGGEEA LFA D+F+MY
Sbjct: 77 EFAKQELEQLKEKLPHQEHQIKILLLPKDEADERNAILEVRAGTGGEEAGLFAADLFRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+R++ +GWKFEV+ + E+ L KEASA+I G GV+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 QRFAANQGWKFEVLSLNETGLGAIKEASASIMGKGVFSRLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+A+EVD+ + +DL+ID YR+ G+GGQH NTT+SAVR+THIP+G+ ++
Sbjct: 197 IHTSAATVAVLPEAEEVDIHIDEKDLQIDVYRASGAGGQHVNTTDSAVRITHIPSGIVVT 256
Query: 318 IQDERSQH 325
QDERSQH
Sbjct: 257 QQDERSQH 264
>gi|91205113|ref|YP_537468.1| peptide chain release factor 1 [Rickettsia bellii RML369-C]
gi|119361596|sp|Q1RJT5.1|RF1_RICBR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91068657|gb|ABE04379.1| Peptide chain release factor RF-1 [Rickettsia bellii RML369-C]
Length = 357
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 172/237 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 268
>gi|157827554|ref|YP_001496618.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
gi|166223596|sp|A8GXI1.1|RF1_RICB8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157802858|gb|ABV79581.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
Length = 357
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 172/237 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE L D + I E + E++ + E S DK L+M EE+ D
Sbjct: 32 EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD + I+E+RAGTGGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ E+ + GYKE SA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++VD++L +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 268
>gi|51473710|ref|YP_067467.1| peptide chain release factor 1 [Rickettsia typhi str. Wilmington]
gi|383752487|ref|YP_005427587.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|383843322|ref|YP_005423825.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
gi|61214605|sp|Q68WK7.1|RF1_RICTY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51460022|gb|AAU03985.1| peptide chain release factor 1 (RF-1) [Rickettsia typhi str.
Wilmington]
gi|380759130|gb|AFE54365.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|380759969|gb|AFE55203.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
Length = 355
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 176/237 (74%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I E + E++ +L E + D L+M E+ + +
Sbjct: 29 EFVKASKEYAELEDIVVKIKEYNKVKSELEEANNLRLEVALDNATLEMINNEIYILENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++ + + GYKEASA+I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISNTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ VD+++ ++DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EGVDIKIEDKDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|418055329|ref|ZP_12693384.1| Peptide chain release factor 1 [Hyphomicrobium denitrificans 1NES1]
gi|353210911|gb|EHB76312.1| Peptide chain release factor 1 [Hyphomicrobium denitrificans 1NES1]
Length = 359
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 170/237 (71%), Gaps = 1/237 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A+Y K KE +L + I LR + E L+ LI + S DKDM+D+A E
Sbjct: 28 SQAQYVKLTKEFAELSPAAAQIEALRKAEAESADLEQLIRDPSADKDMVDLAYAERATLA 87
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
L+ L +LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY RY+ KGWK
Sbjct: 88 SRIGELEQQLRIALLPKDAADEKSAILEVRAGTGGDEAALFAADLFRMYSRYADLKGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E+DL GYKE A+I+G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+L
Sbjct: 148 EVISASENDLGGYKEIIASITGEGVFARLKFESGVHRVQRVPATEASGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A++V++ ++ ED+RIDT R+GG+GGQH N T SAVR+TH+PTG+ + + E+SQH
Sbjct: 208 PEAEDVEIDIKPEDIRIDTMRAGGAGGQHVNKTESAVRITHLPTGIVV-VSAEKSQH 263
>gi|338741716|ref|YP_004678678.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
gi|337762279|emb|CCB68114.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
Length = 384
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/251 (51%), Positives = 178/251 (70%), Gaps = 2/251 (0%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R +++L+N AE+ K +KE +L + I LR + E L+ +I + S DK
Sbjct: 40 RYMAIQDLMNHG-VPQAEFVKLSKEFSELGPVVAQIDALRKAEAESADLEQMINDPSADK 98
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
+M+D+A E + L+ L +LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F
Sbjct: 99 EMVDLAYAERASLAERITELEQQLRIALLPKDAADEKSAILEVRAGTGGDEAALFAADLF 158
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
+MY RY+ GWK E++ +E+DL GYKE A+I+G GV+ +LKFESG+HRVQRVP TE
Sbjct: 159 RMYTRYADLHGWKTEIISASENDLGGYKEIIASITGSGVFARLKFESGVHRVQRVPATEA 218
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
SGR+HTSA +VA+LP+A+E+DV +R ED+RIDT R+GG+GGQH N T+SAVR+THIPTG+
Sbjct: 219 SGRIHTSAATVAVLPEAEELDVDIRPEDIRIDTMRAGGAGGQHVNKTDSAVRMTHIPTGI 278
Query: 315 TISIQDERSQH 325
+ + E+SQH
Sbjct: 279 VV-VSAEKSQH 288
>gi|383482240|ref|YP_005391154.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
gi|378934594|gb|AFC73095.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
Length = 361
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 190/274 (69%), Gaps = 13/274 (4%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELR 114
S++L KI+++ ENL N+ + + KA+KE +L D + I +
Sbjct: 3 FSDNLAKILDK-----------YENLGNKLSSGIMGDAFVKASKEYAELEDVVAKIKKYN 51
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ +++ + E D L+M +E+ + +L+ + +LLPKDDAD + I
Sbjct: 52 KAKSDLEEANNFKLEVGLDNATLEMIKDEIHTLENSLPKLERAVKIALLPKDDADSKSAI 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++ ++++ + GYKEASA+I G V+
Sbjct: 112 IEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVF 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+++ ++DLRIDTYR+ G+G
Sbjct: 172 SKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 232 GQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|255083621|ref|XP_002508385.1| predicted protein [Micromonas sp. RCC299]
gi|226523662|gb|ACO69643.1| predicted protein [Micromonas sp. RCC299]
Length = 366
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 129/271 (47%), Positives = 185/271 (68%), Gaps = 2/271 (0%)
Query: 61 LIKIMEQRVLAIE-RRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+ +E+R+ A+ R A + LV P AE ++ NKEL + + + ++ ++ E
Sbjct: 1 MTPALERRLEAVSARHDALVAALVADPPPRAAEIARINKELARAERVVRAYAAVKERRHE 60
Query: 120 IDGLKSLIYECSE-DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
L+ +I E + D +M MA +EL + L+ L LLP D+AD+ ILEVR
Sbjct: 61 TASLEQVIAESAGVDAEMAQMAEDELATLEETTPALEETLAHLLLPADEADDSGVILEVR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GG+EA+LFA D+ +MYE +++K GW+FE+V S+ G KEA+A+++G VYG+LK
Sbjct: 121 AGAGGDEAALFAADLLRMYEMFARKTGWRFELVAANASEAGGVKEATASLAGDDVYGRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GRVHTS SVA+LPQA+ V++ +R++DL+IDT R+ G+GGQH
Sbjct: 181 FESGVHRVQRVPATETQGRVHTSTASVAVLPQAETVELDIRDDDLKIDTMRASGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTTNSAVR+TH+PTG+T+ +QDERSQH K+
Sbjct: 241 NTTNSAVRITHVPTGVTVVMQDERSQHKNKE 271
>gi|451940354|ref|YP_007460992.1| peptide chain release factor 1 [Bartonella australis Aust/NH1]
gi|451899741|gb|AGF74204.1| peptide chain release factor 1 [Bartonella australis Aust/NH1]
Length = 359
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 132/266 (49%), Positives = 186/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +LR + I L T KE
Sbjct: 1 MVSLPQDRMKKLEKRFEVIESQMAENPNAEI--YVKLASEYAELRPIVAPIRILNTAYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I LK++I + D +M +A EE+ L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IKELKTIIDDTQTDPEMRTLAQEEMPLLYQKIEQLERELQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK E+V ++ES++ GYKE A+ISG GV+ KLKF
Sbjct: 119 GTGGLEAALFAGDLFRMYERYASAHNWKVEIVSLSESEVGGYKEIIASISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+DV +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDVEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|241116888|ref|XP_002401657.1| protein releasing factor, putative [Ixodes scapularis]
gi|215493201|gb|EEC02842.1| protein releasing factor, putative [Ixodes scapularis]
Length = 358
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 174/237 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L+D + I E + E++ + E D L+M +E+ +
Sbjct: 32 EFVKASKEYAELKDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 92 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+++ + GYKEASA I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 152 AISDMGIGGYKEASALIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 211
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+EVD+++ ++DL+IDTYR+ G+GGQH NTT+SAVR+THIPT +T+++QDE+SQH K
Sbjct: 212 EEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTSITVALQDEKSQHKNK 268
>gi|239947714|ref|ZP_04699467.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921990|gb|EER22014.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 355
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 173/234 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L+D + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELKDVVAKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKDDAD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW+FE++
Sbjct: 89 PKLERAVKIALLPKDDADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYAELKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+++ + GYKEASA I G V+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDMGIGGYKEASALIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+EVD+++ ++DL+IDTYR+ G+GGQH NTT+SAVR+THIPT +T+++QDE+SQH
Sbjct: 209 EEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTSITVALQDEKSQH 262
>gi|83592089|ref|YP_425841.1| peptide chain release factor 1 [Rhodospirillum rubrum ATCC 11170]
gi|386348788|ref|YP_006047036.1| peptide chain release factor 1 [Rhodospirillum rubrum F11]
gi|119361593|sp|Q2RWE1.1|RF1_RHORT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83575003|gb|ABC21554.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodospirillum
rubrum ATCC 11170]
gi|346717224|gb|AEO47239.1| peptide chain release factor 1 [Rhodospirillum rubrum F11]
Length = 354
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 175/236 (74%), Gaps = 4/236 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ + ++EL L + I L + E+ G ++L+ +D DM D+A EE+ E
Sbjct: 31 FVRMSRELADLAPVVEAIGRLDDAKAELAGARALL----DDPDMRDLAREEVLRLEAEIP 86
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLP+D+AD+R ILEVRAGTGG+EA+LFA D+ +MYERY+Q++GW+FEV+
Sbjct: 87 ALEHGVKLLLLPRDEADDRGVILEVRAGTGGDEAALFAGDLLRMYERYAQERGWRFEVME 146
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+++D+ G KEASAAISG GV+ +LKFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+
Sbjct: 147 ASDTDIGGIKEASAAISGRGVFARLKFESGVHRVQRVPVTEGGGRIHTSAATVAVLPEAE 206
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
EVDV + +DLRIDTYRS G+GGQH NTT+SAVR+TH+P+G+ QDE+SQH K
Sbjct: 207 EVDVEIEEKDLRIDTYRSQGAGGQHVNTTDSAVRITHLPSGVVAQCQDEKSQHKNK 262
>gi|294851112|ref|ZP_06791785.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026]
gi|294819701|gb|EFG36700.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026]
Length = 377
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMSDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|260755553|ref|ZP_05867901.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870]
gi|260675661|gb|EEX62482.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870]
Length = 342
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|237816235|ref|ZP_04595228.1| peptide chain release factor 1 [Brucella abortus str. 2308 A]
gi|260758776|ref|ZP_05871124.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292]
gi|260884577|ref|ZP_05896191.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68]
gi|297247116|ref|ZP_06930834.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196]
gi|376272411|ref|YP_005150989.1| peptide chain release factor 1 [Brucella abortus A13334]
gi|237788302|gb|EEP62517.1| peptide chain release factor 1 [Brucella abortus str. 2308 A]
gi|260669094|gb|EEX56034.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292]
gi|260874105|gb|EEX81174.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68]
gi|297174285|gb|EFH33632.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196]
gi|363400017|gb|AEW16987.1| peptide chain release factor 1 [Brucella abortus A13334]
Length = 377
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|148558947|ref|YP_001259697.1| peptide chain release factor 1 [Brucella ovis ATCC 25840]
gi|265987430|ref|ZP_06099987.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1]
gi|148370204|gb|ABQ60183.1| peptide chain release factor 1 [Brucella ovis ATCC 25840]
gi|264659627|gb|EEZ29888.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1]
Length = 377
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|265999301|ref|ZP_05465736.2| peptide chain release factor 1 [Brucella melitensis bv. 2 str.
63/9]
gi|384212220|ref|YP_005601304.1| peptide chain release factor 1 [Brucella melitensis M5-90]
gi|384409325|ref|YP_005597946.1| peptide chain release factor 1 [Brucella melitensis M28]
gi|384445866|ref|YP_005604585.1| peptide chain release factor 1 [Brucella melitensis NI]
gi|17982074|gb|AAL51373.1| bacterial peptide chain release factor 1 (rf-1) [Brucella
melitensis bv. 1 str. 16M]
gi|263093126|gb|EEZ17261.1| peptide chain release factor 1 [Brucella melitensis bv. 2 str.
63/9]
gi|326409872|gb|ADZ66937.1| peptide chain release factor 1 [Brucella melitensis M28]
gi|326539585|gb|ADZ87800.1| peptide chain release factor 1 [Brucella melitensis M5-90]
gi|349743855|gb|AEQ09398.1| peptide chain release factor 1 [Brucella melitensis NI]
Length = 377
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|395785827|ref|ZP_10465555.1| peptide chain release factor 1 [Bartonella tamiae Th239]
gi|423717278|ref|ZP_17691468.1| peptide chain release factor 1 [Bartonella tamiae Th307]
gi|395424285|gb|EJF90472.1| peptide chain release factor 1 [Bartonella tamiae Th239]
gi|395427493|gb|EJF93584.1| peptide chain release factor 1 [Bartonella tamiae Th307]
Length = 360
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 186/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + ++R++ +E+R +E+ + N P+A Y K E +L+ + I L +E
Sbjct: 1 MVALPQERMIQVEKRFEMIESQMTNSPDADL--YVKLASEYAELQPIVGPIRALNAAYQE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ L++++ + S DK+M +A EEL RL+ + LLPKD AD++ ILE+RA
Sbjct: 59 VLDLEAMLEDKSTDKEMRALAEEELPTIRQNISRLEQEVQILLLPKDAADDKSAILEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ GWK E+V +E D+ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYASANGWKVEMVSASEGDVGGYKEIIATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRQEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|347530046|ref|YP_004836794.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
gi|345138728|dbj|BAK68337.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
Length = 359
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 190/273 (69%), Gaps = 13/273 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANK---ELRKLRDSMHLISELRTKQ 117
+ I R+ AI RR ++ + +P+ PAE+ + +K EL + + +++LRT+Q
Sbjct: 1 MTTISPDRIAAILRRQEEVQAQMARPDLDPAEFVRLSKDYAELEPVVTAAREVAQLRTEQ 60
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
E++ + + D +M MA EE+ + + L +LLP+D ADER +LE+
Sbjct: 61 SELEAMLA-------DPEMKAMAQEEIEAVRERLPEAEHALAIALLPRDAADERAAMLEI 113
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA D+ +MY+RY++ +GW+ E++ + S+ G+KE A++SG GV+ +L
Sbjct: 114 RAGTGGDEAALFAGDLLRMYQRYAESRGWRVEIISASASEAGGFKEVIASVSGAGVFARL 173
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE--DLRIDTYRSGGSGG 295
KFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV++ NE DLRID YRS G+GG
Sbjct: 174 KFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVQI-NEATDLRIDVYRSSGAGG 232
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
QH NTT+SAVR+TH+PTG+ ++ QDE+SQH K
Sbjct: 233 QHVNTTDSAVRITHLPTGIVVTQQDEKSQHKNK 265
>gi|376275535|ref|YP_005115974.1| peptide chain release factor 1 [Brucella canis HSK A52141]
gi|363404102|gb|AEW14397.1| peptide chain release factor 1 [Brucella canis HSK A52141]
Length = 372
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 276
>gi|451941480|ref|YP_007462117.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900867|gb|AGF75329.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 359
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/266 (49%), Positives = 186/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P A Y K E +L+ +H I L +E
Sbjct: 1 MVSLPKDRMTQLEKRFEIIESQMAQSPNADT--YVKLASEYAELQPIVHSIRALNALYRE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+ LI + D +M ++A EE+ L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELEILISDKLTDIEMRNLAQEEIPLLYQKMEQFEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R+EDLRIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDLRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|254472406|ref|ZP_05085806.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|374328358|ref|YP_005078542.1| peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
gi|211958689|gb|EEA93889.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|359341146|gb|AEV34520.1| Peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
Length = 357
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/244 (51%), Positives = 175/244 (71%), Gaps = 6/244 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELC 145
+P Y K +++ +L + I ELR + +++G ++L+ + D +M ++A +EL
Sbjct: 26 APDVYIKLSRDYAELEPIVMSIRELRKAEGDLEGAEALLSDPDSDAEMKELAQLERDELT 85
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
++E L + LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+R++ G
Sbjct: 86 GVVEE---LTQKVRIGLLPKDKADSHDVILEVRAGTGGDEAALFAGDLFRMYQRFADNNG 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK EV+ +E D+ G+KE AA++G V+GKLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 143 WKVEVMSSSEGDMGGFKEIVAAVTGQEVFGKLKFESGVHRVQRVPETESGGRIHTSAATV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LPQA+EVDV + DLRIDTYR+ G+GGQH NTT+SAVR+TH PTG+ +++QDERSQH
Sbjct: 203 AVLPQAEEVDVDINPADLRIDTYRASGAGGQHVNTTDSAVRITHNPTGIVVAVQDERSQH 262
Query: 326 MVKD 329
KD
Sbjct: 263 KNKD 266
>gi|300025029|ref|YP_003757640.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
gi|299526850|gb|ADJ25319.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
Length = 359
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 170/237 (71%), Gaps = 1/237 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A+Y K KE +L + I LR + E L+ L+ + S DKDM D+A E
Sbjct: 28 SQAQYVKLTKEFAELSPAAAQIEALRKAEAESADLEQLLRDPSADKDMADLAYAERAALA 87
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
+ L+ L +LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY RY+ +GWK
Sbjct: 88 ERIGGLEQQLRIALLPKDAADEKSAILEVRAGTGGDEAALFAADLFRMYSRYADLRGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E+DL GYKE A+I+G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+L
Sbjct: 148 EVISASENDLGGYKEIVASITGEGVFARLKFESGVHRVQRVPATEASGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A++V++ ++ +D+RIDT R+GG+GGQH N T SAVR+TH+PTG+ + + E+SQH
Sbjct: 208 PEAEDVEIDIKPDDIRIDTMRAGGAGGQHVNKTESAVRITHLPTGIVV-VSAEKSQH 263
>gi|407779483|ref|ZP_11126738.1| peptide chain release factor 1 [Nitratireductor pacificus pht-3B]
gi|407298614|gb|EKF17751.1| peptide chain release factor 1 [Nitratireductor pacificus pht-3B]
Length = 359
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 179/243 (73%), Gaps = 9/243 (3%)
Query: 86 PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145
PE P Y K E +L++ I ELR + E+ L++++ + S D++M ++A +L
Sbjct: 27 PE--PDVYVKLASEYAELQEVAAKIRELRQAEAELSDLETMLADPSTDREMRELAEADLG 84
Query: 146 LAIDEEKR---LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202
D E+R LQ+ + LLPKD+ADE++ ILE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 85 ---DVEERIDALQAEMQILLLPKDEADEKNAILEIRAGTGGDEAALFAGDLFRMYERYAS 141
Query: 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262
+K W+ EVV +E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE GR+HTSA
Sbjct: 142 EKSWRVEVVSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSA 201
Query: 263 VSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
+VA+LP+A+E+DV +RNED+RIDT R+ G+GGQH NTT+SAVR+THIP+G+ + +Q E+
Sbjct: 202 ATVAVLPEAEEIDVEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPSGIVV-VQAEK 260
Query: 323 SQH 325
SQH
Sbjct: 261 SQH 263
>gi|407770700|ref|ZP_11118067.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407286274|gb|EKF11763.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 360
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 184/259 (71%)
Query: 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
+ RR L++L++ ++K ++E +L + + +++ + +++G + ++ +
Sbjct: 10 GVVRRFDELKSLLSGGAVDGDSFAKLSREYAELSPIVEAVEKVKKLRVDLEGAQEILDDA 69
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D+DM +MA E +D + + + LLPKDDADE++ ILE+RAGTGGEEA+LFA
Sbjct: 70 GSDRDMREMAEAEKYEILDALPKAEHDVKLMLLPKDDADEKNAILEIRAGTGGEEAALFA 129
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+++MY+RY++ +GWKFE + E+DL GYKE +SG GV+ +LKFESG+HRVQRVP
Sbjct: 130 ADLYRMYQRYAENRGWKFEQMDANENDLGGYKEVIVNVSGSGVFARLKFESGVHRVQRVP 189
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
+TE GR+HTSA +VA+LP+A+EVD+ + +DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 VTEGGGRIHTSAATVAVLPEAEEVDIHIDPKDLRIDTYRSQGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVKD 329
PTG+ + Q+ +SQH K+
Sbjct: 250 PTGVVAASQEAKSQHKNKE 268
>gi|15604386|ref|NP_220902.1| peptide chain release factor 1 [Rickettsia prowazekii str. Madrid
E]
gi|383487352|ref|YP_005405032.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|383487931|ref|YP_005405610.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|383488777|ref|YP_005406455.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|383489616|ref|YP_005407293.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
gi|383499757|ref|YP_005413118.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500593|ref|YP_005413953.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|386082378|ref|YP_005998955.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|6225942|sp|Q9ZD21.1|RF1_RICPR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|3861078|emb|CAA14978.1| PEPTIDE CHAIN RELEASE FACTOR 1 (prfA) [Rickettsia prowazekii str.
Madrid E]
gi|292572142|gb|ADE30057.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|380757717|gb|AFE52954.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|380758290|gb|AFE53526.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|380760810|gb|AFE49332.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|380761656|gb|AFE50177.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|380762503|gb|AFE51023.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763339|gb|AFE51858.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
Length = 355
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 175/237 (73%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L D + I + + E++ + E + D L+M E+ +
Sbjct: 29 EFVKASKEYAELEDVVVKIKQYNKAKSELEEANNFRLEMALDNATLEMIDNEIHTLENLL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + SLLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RYS+ KGW+FE++
Sbjct: 89 PKLERAVRISLLPKDEADSKSAIIEVRAGSGGEEAALFAAVLFNMYQRYSEFKGWRFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++++ + GYKEASA+I G V+ KLKFESG+HRVQR+P TE GR+HTSA +VA+LP+A
Sbjct: 149 AISDTGIGGYKEASASIKGKDVFSKLKFESGVHRVQRIPETESQGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ +D+++ ++DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|261323819|ref|ZP_05963016.1| peptide chain release factor 1 [Brucella neotomae 5K33]
gi|261299799|gb|EEY03296.1| peptide chain release factor 1 [Brucella neotomae 5K33]
Length = 372
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E + ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDVAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 276
>gi|407783435|ref|ZP_11130636.1| peptide chain release factor 1 [Oceanibaculum indicum P24]
gi|407202160|gb|EKE72155.1| peptide chain release factor 1 [Oceanibaculum indicum P24]
Length = 358
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 169/232 (72%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ + +KE +L + I+ LR + E DGL ++ + S D +M MA EEL L D
Sbjct: 32 FQRMSKEYAELEAVVESINALRAGEAERDGLVQMLADPSTDAEMKTMAEEELALLEDRLT 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD+ADE++ ILEVRAGTGG+EA LFA ++F+MY RY+ GW+FEV+
Sbjct: 92 ELEQAVKIALLPKDEADEKNAILEVRAGTGGDEAGLFAAELFEMYRRYAALHGWRFEVME 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E+D+ G KE A I+G V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 VSENDVGGMKEGIATITGANVFARLKYESGVHRVQRVPATENQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
EVDV + ++DLRID +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQ
Sbjct: 212 EVDVHIEDKDLRIDVFRASGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQ 263
>gi|265993634|ref|ZP_06106191.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str.
Ether]
gi|262764615|gb|EEZ10536.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str.
Ether]
Length = 372
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 193/278 (69%), Gaps = 13/278 (4%)
Query: 55 EML---SNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLI 110
EML +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I
Sbjct: 5 EMLQFPGHDMIALPQDRMDQLLKRFSMIESQMANNPDSD--SYVKLASEYSELQDVVGKI 62
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDD 167
EL + E L ++ + S D +M +A EEL + EKR+ L + LLPKD
Sbjct: 63 RELSDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDA 119
Query: 168 ADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAA 227
AD+++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A
Sbjct: 120 ADDKNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIAT 179
Query: 228 ISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDT 287
+SG GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT
Sbjct: 180 VSGKGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDT 239
Query: 288 YRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 240 MRASGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 276
>gi|118588514|ref|ZP_01545923.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
gi|118439220|gb|EAV45852.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
Length = 357
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 185/258 (71%), Gaps = 9/258 (3%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE++++ P Y K ++E L + I L ++++ G K+L+ + S D
Sbjct: 13 RFAELEHMMS-ANPDPGAYVKLSREYAGLEPLVGKIRALIKAEQDLAGAKALLQDPSSDA 71
Query: 135 DMLDMATEELCLAIDE-EKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
+M ++A E DE E+R++ L + LLPKD+AD D ILEVRAGTGG+EA+LFA
Sbjct: 72 EMRELAEMER----DELEERVEELAQDVRIGLLPKDEADSNDAILEVRAGTGGDEAALFA 127
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY+RY++ +GWK E++ +E ++ GYKE A++SG V+ KLKFESG+HRVQRVP
Sbjct: 128 GDLFRMYQRYAELQGWKVEILSASEGEVGGYKEVIASVSGENVFAKLKFESGVHRVQRVP 187
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA+LPQA++VD+ ++ DLRIDTYR+ G+GGQH NTT+SAVR+TH+
Sbjct: 188 ATESGGRIHTSAATVAVLPQAEDVDIDVQESDLRIDTYRASGAGGQHVNTTDSAVRITHL 247
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ +++QDERSQH K
Sbjct: 248 PTGIVVAVQDERSQHKNK 265
>gi|121602027|ref|YP_988678.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|421760486|ref|ZP_16197303.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
gi|166223530|sp|A1URS5.1|RF1_BARBK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120614204|gb|ABM44805.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|411175770|gb|EKS45795.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
Length = 359
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/266 (49%), Positives = 184/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ IE+R +E+ + Q P A Y K E +L+ + I L KE
Sbjct: 1 MVSLSQDRMKQIEKRFEIIESQMAQNPNAET--YVKLASEYAELQQIVTPIRTLNALYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ L+++ D DM +A EEL L + ++L+ + LLPKD ADE+ I+E+RA
Sbjct: 59 VTELEAMANTTQIDADMYALAQEELVLLRQKIEQLEQEIQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV +++S++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANAHKWKVEVVSLSDSEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|225628073|ref|ZP_03786108.1| peptide chain release factor 1 [Brucella ceti str. Cudo]
gi|261220926|ref|ZP_05935207.1| peptide chain release factor 1 [Brucella ceti B1/94]
gi|225616898|gb|EEH13945.1| peptide chain release factor 1 [Brucella ceti str. Cudo]
gi|260919510|gb|EEX86163.1| peptide chain release factor 1 [Brucella ceti B1/94]
Length = 377
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 191/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 13 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 70
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 71 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 127
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 128 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 187
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 188 KGVFSTLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 247
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 248 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 281
>gi|265996886|ref|ZP_06109443.1| peptide chain release factor 1 [Brucella ceti M490/95/1]
gi|262551354|gb|EEZ07344.1| peptide chain release factor 1 [Brucella ceti M490/95/1]
Length = 372
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 191/275 (69%), Gaps = 10/275 (3%)
Query: 55 EMLSNDLIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISEL 113
+ L +D+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL
Sbjct: 8 QFLGHDMIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIREL 65
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADE 170
+ E L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+
Sbjct: 66 SDARMEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADD 122
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG
Sbjct: 123 KNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSG 182
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+
Sbjct: 183 KGVFSTLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRA 242
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 243 SGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 276
>gi|265982882|ref|ZP_06095617.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306838261|ref|ZP_07471111.1| peptide chain release factor 1 [Brucella sp. NF 2653]
gi|264661474|gb|EEZ31735.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306406664|gb|EFM62893.1| peptide chain release factor 1 [Brucella sp. NF 2653]
Length = 359
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 189/269 (70%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|308805082|ref|XP_003079853.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
gi|116058310|emb|CAL53499.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
Length = 1134
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 137/280 (48%), Positives = 198/280 (70%), Gaps = 5/280 (1%)
Query: 50 RSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHL 109
R+Y+T+ + +I + + A +R L L++ P+A+ +ANKEL +L +
Sbjct: 531 RTYTTK--TAPVIDALYAQGEAATKRHDELIALISAPDAAIDRVIEANKELARLDPLVKQ 588
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK-SLLPKDDA 168
S +++ + E + L L S++KD+ ++A EEL AID + Q L+ LLP+DDA
Sbjct: 589 YSMVKSLRDERESLDELA-RTSDEKDITELAREEL-RAIDAKLPEQEHALRIMLLPRDDA 646
Query: 169 DERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAI 228
D+R ILEVRAG GG+EA+LFA ++F+MY +++K GW+FE + ++E+D +G +E SA +
Sbjct: 647 DDRGAILEVRAGAGGDEAALFAAELFRMYALHARKSGWRFETLNMSETDGKGIREGSAEV 706
Query: 229 SGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTY 288
G GV+G+LKFESG+HRVQRVP TE GRVHTS SVA+LP A EVD+ +R+ED+RI+T
Sbjct: 707 LGDGVFGRLKFESGVHRVQRVPETETQGRVHTSTASVAVLPHAAEVDMDIRDEDVRIETM 766
Query: 289 RSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
R+ G+GGQH NTTNSAVR+TH+PTG+T++IQDERSQH K
Sbjct: 767 RASGAGGQHVNTTNSAVRLTHLPTGITVAIQDERSQHKNK 806
>gi|306844842|ref|ZP_07477425.1| peptide chain release factor 1 [Brucella inopinata BO1]
gi|306274774|gb|EFM56555.1| peptide chain release factor 1 [Brucella inopinata BO1]
Length = 359
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 189/269 (70%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|379022896|ref|YP_005299557.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
gi|376323834|gb|AFB21075.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
Length = 355
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 172/237 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L + + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEEVVEKIKEYNKAKSELEEANNFKLEVELDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++
Sbjct: 89 PKLERAVKIALLPKDEADSKSAIIEVRAGSGGEEAALFAAILFNMYQRYAELKGWHFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ++ + GYKEASA+I G V+ KLK ESG+HRVQR+P TE GR+HTSA +VA+LP+
Sbjct: 149 AIVDTGIGGYKEASASIKGKDVFSKLKCESGVHRVQRIPETESHGRIHTSAATVAVLPEV 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++VD++L ++DLRIDTYRS G+GGQH NTTNSAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|157803730|ref|YP_001492279.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
gi|166223597|sp|A8EYR1.1|RF1_RICCK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157784993|gb|ABV73494.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
Length = 355
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 172/237 (72%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KE +L + + I E + E++ + E D L+M +E+ +
Sbjct: 29 EFVKASKEYAELEEVVEKIKEYNKAKSELEEANNFKLEVGLDNATLEMIEDEIHTLENSL 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+L+ + +LLPKD+AD + I+EVRAG+GGEEA+LFA +F MY+RY++ KGW FE++
Sbjct: 89 PKLERAVKIALLPKDEADSKSAIIEVRAGSGGEEAALFAAILFNMYQRYAELKGWHFEIL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ ++ + GYKEASA+I G V+ KLK ESG+HRVQR+P TE GR+HTSA +VA+LP+
Sbjct: 149 AIVDTGIGGYKEASASIKGKDVFSKLKCESGVHRVQRIPETESHGRIHTSAATVAVLPEV 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++VD++L ++DLRIDTYRS G+GGQH NTTNSAVR+THIPTG+T+++QDE+SQH K
Sbjct: 209 EDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNK 265
>gi|392378185|ref|YP_004985344.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
gi|356879666|emb|CCD00592.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
Length = 357
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 174/242 (71%), Gaps = 6/242 (2%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PA++++ +KE L I+EL+ + E L +I + + D DM +A EE D
Sbjct: 28 PADFARLSKEYADLTPVAEAIAELKKAKAEAADLAGMIADPAGDADMKALAEEEFG---D 84
Query: 150 EEKRLQSLLLK---SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
+R+ +L + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ +GW
Sbjct: 85 LTRRIPALERRVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGLQGW 144
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
+FE + V+E+ + GYKEA A I+G V+ +LKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 145 RFETMEVSETGIGGYKEAIANITGRNVFARLKFESGVHRVQRVPATETQGRIHTSAATVA 204
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 205 VLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHK 264
Query: 327 VK 328
K
Sbjct: 265 NK 266
>gi|407976875|ref|ZP_11157771.1| peptide chain release factor 1 [Nitratireductor indicus C115]
gi|407427774|gb|EKF40462.1| peptide chain release factor 1 [Nitratireductor indicus C115]
Length = 359
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 128/252 (50%), Positives = 182/252 (72%), Gaps = 9/252 (3%)
Query: 79 LENLVNQPEASP-AE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E + Q A P AE Y K E +L++ I EL+ + E+ L +++ + S D++M
Sbjct: 16 FELIETQMAAGPDAETYVKLASEYSELQEVAAKIRELKQAEGELADLTAMLNDASTDREM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
++A +L E+RL++L + LLPKD+ADE++ ILE+RAGTGG+EA+LFA D+
Sbjct: 76 RELAEADLETV---EERLETLSAEMQLLLLPKDEADEKNAILEIRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ +GW+ EVV +E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE
Sbjct: 133 FRMYERYAADRGWRVEVVSTSEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GR+HTSA +VA+LP+A+E+DV +RNED+RIDT R+ G+GGQH NTT+SAVR+THIP+G
Sbjct: 193 AQGRIHTSAATVAVLPEAEEIDVEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPSG 252
Query: 314 MTISIQDERSQH 325
+ + +Q E+SQH
Sbjct: 253 IVV-VQAEKSQH 263
>gi|222149911|ref|YP_002550868.1| peptide chain release factor 1 [Agrobacterium vitis S4]
gi|254790856|sp|B9JT13.1|RF1_AGRVS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|221736893|gb|ACM37856.1| peptide chain release factor 1 [Agrobacterium vitis S4]
Length = 359
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/259 (51%), Positives = 181/259 (69%), Gaps = 12/259 (4%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR +E ++ A PA Y K E +L+ + I EL +KE+ LK+L+ +
Sbjct: 12 LERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVKAIRELGLAEKEVADLKALLAD 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEA 186
S D++M D+A EL D E RL+ L + LLPKD ADE+ ILE+RAGTGG EA
Sbjct: 69 KSTDREMRDLAEMELP---DVEARLEGLEKEIQIQLLPKDAADEKSAILEIRAGTGGSEA 125
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MYER++ KGWK EV+ +E D G+KE A ++G GV+ KLKFESG+HRV
Sbjct: 126 ALFAGDLFRMYERFAAGKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFSKLKFESGVHRV 185
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR
Sbjct: 186 QRVPDTETQGRIHTSAATVAVLPEAEEIDIEVRAEDIRIDTMRSSGAGGQHVNTTDSAVR 245
Query: 307 VTHIPTGMTISIQDERSQH 325
+TH+PTG+ ++ E+SQH
Sbjct: 246 ITHLPTGLVVT-SSEKSQH 263
>gi|87198313|ref|YP_495570.1| peptide chain release factor 1 [Novosphingobium aromaticivorans DSM
12444]
gi|119361571|sp|Q2GBN7.1|RF1_NOVAD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|87133994|gb|ABD24736.1| bacterial peptide chain release factor 1 (bRF-1) [Novosphingobium
aromaticivorans DSM 12444]
Length = 354
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 180/264 (68%), Gaps = 5/264 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + + R+ I R A LE + A++ A+++ +L + E+R + E+
Sbjct: 1 MSVSDARLAQIAARFAELEARLASGTLEGADFIAASRDYAELEPVARVAEEVREMRGELV 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L +L +D DM ++A EEL E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLAAL-----DDPDMRELADEELARIRAELPEAEHRLAVAMLPRDSADARPAMLEIRAGT 115
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MYERY+ ++GW+ E + V +DL GYKE A ++G GV+ KLKFES
Sbjct: 116 GGDEAALFAADLFRMYERYAAEQGWRVETISVNANDLGGYKEVVANVAGQGVFAKLKFES 175
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV + ++DL+ID YR+ G+GGQH NTT
Sbjct: 176 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVAIEDKDLKIDIYRASGAGGQHVNTT 235
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SAVR+TH+P+G+ ++ QDERSQH
Sbjct: 236 DSAVRITHLPSGLVVTCQDERSQH 259
>gi|217977729|ref|YP_002361876.1| peptide chain release factor 1 [Methylocella silvestris BL2]
gi|254790890|sp|B8EI32.1|RF1_METSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217503105|gb|ACK50514.1| peptide chain release factor 1 [Methylocella silvestris BL2]
Length = 360
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/239 (51%), Positives = 169/239 (70%), Gaps = 6/239 (2%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PA Y + ++E L I + R++ +E++GL +++ + + D +M +A EEL D
Sbjct: 27 PALYVQLSREFAGLEQVAAAIRDYRSQMQEVEGLAAMLADPTTDSEMRGLAEEELR---D 83
Query: 150 EEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
++RL++L L +LLPKD ADER ILEVRAGTGG+EA+LFA D+F+MY+RY++ KGW
Sbjct: 84 AKERLEALEHQLKIALLPKDAADERSAILEVRAGTGGDEAALFAGDLFRMYQRYAESKGW 143
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
E++ E G+KE A I+G GV+ KLKFESG HRVQRVP TE GR+HTSA +VA
Sbjct: 144 SVEIISANEGAAGGFKEIIAEIAGRGVFAKLKFESGAHRVQRVPDTETQGRIHTSAATVA 203
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+LP+A EVDV + DL+IDT R+ G+GGQH N T SA+R+THIPTG + +QDERSQH
Sbjct: 204 VLPEAQEVDVEINEADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGTIVFVQDERSQH 262
>gi|154252199|ref|YP_001413023.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1]
gi|171769599|sp|A7HTY3.1|RF1_PARL1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|154156149|gb|ABS63366.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1]
Length = 355
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 153/195 (78%)
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+DM +MA EE+ +E RL+ + LLPKD AD+R+ ILEVRAGTGG+EA+LFA D+
Sbjct: 67 RDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGGDEAALFAGDL 126
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ +GWK E++ +E ++ GYKE A ISG GVY KLKFESG+HRVQRVP+TE
Sbjct: 127 FRMYERYASNQGWKVELIAASEGEMGGYKEIIAGISGPGVYAKLKFESGVHRVQRVPVTE 186
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GR+HTSA +VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR+TH+PTG
Sbjct: 187 GGGRIHTSAATVAVLPEAEEVDVEIEDKDLRIDVYRASGAGGQHVNKTESAVRITHLPTG 246
Query: 314 MTISIQDERSQHMVK 328
+ ++ QDE+SQH K
Sbjct: 247 IVVAQQDEKSQHKNK 261
>gi|94496666|ref|ZP_01303242.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
gi|94424026|gb|EAT09051.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
Length = 361
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 181/267 (67%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P ++ + +KE ++ ELR ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDQFVRLSKEYAEIEPVAAAARELRRLRQELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ + D M DMA EE+ L + + L LLP+D AD R +LE+RAGT
Sbjct: 61 ALEMMTGGEEADPAMRDMAQEEMQLLKSQLPAAERALALQLLPRDAADARPAMLEIRAGT 120
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKFES
Sbjct: 121 GGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGAGVFAKLKFES 180
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH NTT
Sbjct: 181 GVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADADLKIDIYRASGAGGQHVNTT 240
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+TH+PTG+ ++ QDERSQH K
Sbjct: 241 DSAVRITHVPTGIVVTQQDERSQHKNK 267
>gi|404316530|ref|ZP_10964463.1| peptide chain release factor 1 [Ochrobactrum anthropi CTS-325]
Length = 357
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 189/269 (70%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L++ + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDARKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL EKR++ L + LLPKD ADE++ ILE
Sbjct: 59 AVDLAAMRDDASTDAEMRALALEELPGV---EKRIEGLEQEVQILLLPKDAADEKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|254504878|ref|ZP_05117029.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
gi|222440949|gb|EEE47628.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
Length = 357
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 181/254 (71%), Gaps = 1/254 (0%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE++++ PA Y K ++E L + I L ++++ G + LI + + D
Sbjct: 13 RFAELEHMMS-ANPDPASYVKLSREYAGLEPLVLKIRALVKAEEDLKGAEDLIEDPATDP 71
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
+M ++A E + +RL + LLPKD+AD D ILEVRAGTGG+EA+LFA D+F
Sbjct: 72 EMRELAELERDELSENVERLTQDVRIGLLPKDEADTNDAILEVRAGTGGDEAALFAGDLF 131
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
+MY+RY++ +GWK E++ +E ++ G+KE A++SG V+ +LKFESG+HRVQRVP TE
Sbjct: 132 RMYQRYAELRGWKVEILSASEGEVGGFKEVIASVSGENVFARLKFESGVHRVQRVPATES 191
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GR+HTSA +VA+LPQA+ VD+ +++ DLRIDT+R+ G+GGQH NTT+SAVR+THIPTG+
Sbjct: 192 GGRIHTSAATVAVLPQAENVDIDVQDSDLRIDTFRASGAGGQHVNTTDSAVRITHIPTGI 251
Query: 315 TISIQDERSQHMVK 328
+++QDERSQH K
Sbjct: 252 VVAVQDERSQHKNK 265
>gi|334345900|ref|YP_004554452.1| peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
gi|334102522|gb|AEG49946.1| Peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
Length = 363
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 182/266 (68%), Gaps = 2/266 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVARAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLPKD AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADADPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ GYKE A+++GVGV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGVGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+TH+P+G+ ++ QDERSQH
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQH 266
>gi|153008371|ref|YP_001369586.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188]
gi|166223580|sp|A6WXQ3.1|RF1_OCHA4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151560259|gb|ABS13757.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188]
Length = 357
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 189/269 (70%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L++ + I EL +KE
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDSRKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL EKR++ L + LLPKD ADE++ ILE
Sbjct: 59 AVDLAAMRDDASTDAEMRALALEELPGV---EKRIEGLEQEVQILLLPKDAADEKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|384262086|ref|YP_005417272.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
gi|378403186|emb|CCG08302.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
Length = 354
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 179/247 (72%), Gaps = 4/247 (1%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
L L+ Q + + ++EL L + I+ L + E ++++ +D D+
Sbjct: 17 LHALLAQSTGGGETFVRLSRELADLTPVVEAITALERARTERAEAQAML----DDPDLRA 72
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EEL D RL+ + LLPKD+ADER ILEVRAGTGG+EA+LFA D+ +MY
Sbjct: 73 LAREELDRLDDTLPRLEKDVWLMLLPKDEADERGVILEVRAGTGGDEAALFAGDLLRMYG 132
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+Q++GW+FEV+ +++D+ G KEASA+I+G GVY +LK+ESG+HRVQRVP+TE GR+
Sbjct: 133 RYAQERGWRFEVLDASDTDIGGVKEASASIAGRGVYARLKYESGVHRVQRVPVTEAGGRI 192
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +VA+LP+A+EVDV++ ++DLR+DTYRS G+GGQH NTT+SAVR+TH+P+G+ +
Sbjct: 193 HTSAATVAVLPEAEEVDVQIDDKDLRVDTYRSQGAGGQHVNTTDSAVRITHLPSGVVVQC 252
Query: 319 QDERSQH 325
QDE+SQH
Sbjct: 253 QDEKSQH 259
>gi|319408172|emb|CBI81825.1| peptide chain release factor 1 [Bartonella schoenbuchensis R1]
Length = 359
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 184/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ IE+R +E+ + P A Y K E +L+ + I L KE
Sbjct: 1 MVSLPQNRIKQIEKRFEIIESQMAGSPNAET--YIKLASEYAELQLIVTPIRTLNALYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I+ LK++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IEELKNIISDKQTDVEMRNLAQEELSLLCQKIEQLERELQILLLPKDIADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK E++ +++ D+ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEIISLSDGDVGGYKEIVATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETEAGGRIHTSAATVAVLPEAEEIDIAIHPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|312115445|ref|YP_004013041.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC
17100]
gi|311220574|gb|ADP71942.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC
17100]
Length = 361
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 170/233 (72%), Gaps = 1/233 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ K +KE L + I L ++E D L+ +I + + + DM ++A EEL A +
Sbjct: 32 FKKLSKEFSDLDPLVAAIKTLEAAEEERDSLRQMIEDPAAEPDMAELAREELEAAEPRVE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD ADE+ ILEVRAGTGGEEA+LFA D+F+MY+RY+ KGWK V+
Sbjct: 92 QLEHELQIMLLPKDAADEKSAILEVRAGTGGEEAALFAADLFRMYQRYADLKGWKVNVLS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+++D G++E A+ISG GV+ ++KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 VSDADAGGFREIVASISGKGVFARMKFESGVHRVQRVPETENQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV +R +D+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 212 EVDVEIREQDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIIVT-SSEKSQH 263
>gi|402496738|ref|YP_006555998.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Onchocerca ochengi]
gi|398650011|emb|CCF78181.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Onchocerca ochengi]
Length = 373
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 192/285 (67%), Gaps = 15/285 (5%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPE--------ASPAEYSKANKELRKLRDSM 107
ML ++KI++ + IE L+ N E S E+ +KE +LR +
Sbjct: 1 MLFTKVVKILDLSYMDIENNLQDLKKKFNDIERKLGNPINLSQKEFINFSKEYSELRPII 60
Query: 108 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK----RLQSLLLKSLL 163
+I E T +KEI LK ++ + + + D+ ++A EE ++++K ++++ L +LL
Sbjct: 61 KIIDEYNTLKKEISDLKEILKDENSEYDIKELAKEEF---LEKQKVLLPKVKAKLKLALL 117
Query: 164 PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKE 223
P D+ D R+ ILE+RAGTGGEEA+LFA +F+MY++Y++K+ WKFE + ++ + + GYKE
Sbjct: 118 PTDEDDSRNAILEIRAGTGGEEAALFAAMLFRMYQKYAEKRNWKFEPINISSTGIGGYKE 177
Query: 224 ASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDL 283
ASA ++G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DL
Sbjct: 178 ASALVNGTEVFARLKFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDL 237
Query: 284 RIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
RID YRS G GGQ NTT+SAVRVTH+PTG+ + QDE+SQH K
Sbjct: 238 RIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVVIQQDEKSQHKNK 282
>gi|161511164|ref|NP_539109.2| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
gi|225853308|ref|YP_002733541.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457]
gi|260562790|ref|ZP_05833276.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
gi|20139330|sp|Q8YJ95.2|RF1_BRUME RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790867|sp|C0RFB5.1|RF1_BRUMB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|225641673|gb|ACO01587.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457]
gi|260152806|gb|EEW87898.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M]
Length = 359
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 188/269 (69%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|395784696|ref|ZP_10464518.1| peptide chain release factor 1 [Bartonella melophagi K-2C]
gi|395421956|gb|EJF88178.1| peptide chain release factor 1 [Bartonella melophagi K-2C]
Length = 359
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 186/267 (69%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASP-AE-YSKANKELRKLRDSMHLISELRTKQK 118
++ + + R+ IE+R +E+ Q SP AE Y K E +L+ + I L K
Sbjct: 1 MVSLPQNRIKQIEKRFEVIES---QMAGSPNAEIYIKLASEYAELQLIVTPIRTLNALYK 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
EI+ LK++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+R
Sbjct: 58 EIEELKNIISDKQTDVEMRNLAQEELLLLCQKIEQLERELQILLLPKDIADEKSAIIEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYERY+ WK E++ +++ D+ GYKE A +SG GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERYANTHNWKVEIISLSDGDVGGYKEIVATVSGKGVFSKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH
Sbjct: 178 FESGVHRVQRIPETEAGGRIHTSAATVAVLPEAEEIDIAIHPEDIRIDTMRASGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 238 NTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|62290730|ref|YP_222523.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. 9-941]
gi|82700642|ref|YP_415216.1| peptide chain release factor 1 [Brucella melitensis biovar Abortus
2308]
gi|189024940|ref|YP_001935708.1| peptide chain release factor 1 [Brucella abortus S19]
gi|260545992|ref|ZP_05821732.1| peptide chain release factor 1 [Brucella abortus NCTC 8038]
gi|260760500|ref|ZP_05872843.1| peptide chain release factor 1 [Brucella abortus bv. 2 str.
86/8/59]
gi|261214824|ref|ZP_05929105.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya]
gi|261315085|ref|ZP_05954282.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10]
gi|423168151|ref|ZP_17154854.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI435a]
gi|423169473|ref|ZP_17156148.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI474]
gi|423175537|ref|ZP_17162206.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI486]
gi|423177613|ref|ZP_17164258.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI488]
gi|423178906|ref|ZP_17165547.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI010]
gi|423182037|ref|ZP_17168674.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI016]
gi|423187021|ref|ZP_17173635.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI021]
gi|423190543|ref|ZP_17177151.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI259]
gi|75496230|sp|Q57B22.1|RF1_BRUAB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361513|sp|Q2YLN8.1|RF1_BRUA2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238689404|sp|B2S825.1|RF1_BRUA1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|62196862|gb|AAX75162.1| PrfA, peptide chain release factor 1 [Brucella abortus bv. 1 str.
9-941]
gi|82616743|emb|CAJ11828.1| Class I peptide chain release factor domain:Peptide chain release
factor 1:PCRF domain [Brucella melitensis biovar Abortus
2308]
gi|189020512|gb|ACD73234.1| Class I peptide chain release factor domain protein [Brucella
abortus S19]
gi|260096099|gb|EEW79975.1| peptide chain release factor 1 [Brucella abortus NCTC 8038]
gi|260670932|gb|EEX57753.1| peptide chain release factor 1 [Brucella abortus bv. 2 str.
86/8/59]
gi|260916431|gb|EEX83292.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya]
gi|261304111|gb|EEY07608.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10]
gi|374535981|gb|EHR07502.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI486]
gi|374539900|gb|EHR11403.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI435a]
gi|374543152|gb|EHR14635.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI474]
gi|374549201|gb|EHR20645.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI488]
gi|374551850|gb|EHR23279.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI016]
gi|374552222|gb|EHR23650.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI010]
gi|374554313|gb|EHR25724.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI259]
gi|374557733|gb|EHR29129.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. NI021]
Length = 359
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 188/269 (69%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|297182853|gb|ADI19004.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_05I22]
Length = 334
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/258 (49%), Positives = 176/258 (68%), Gaps = 8/258 (3%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
+ERR L E S + ++EL +LR I +R + E+ +++ E +
Sbjct: 11 LERRQEVETKLSRSAELSSKALADLSRELSELRPVCEQIELVRALESELKDAITMVVEAA 70
Query: 132 EDKDMLDMATEELCLAID----EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
D +M MA E+ L + E++RLQ LLL PKD D R+ ILEVRAGTGG+EA+
Sbjct: 71 GDDEMQAMAEAEVTLLKERIPIEKERLQLLLL----PKDKDDSRNAILEVRAGTGGDEAA 126
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LF ++F MY+R++ K GW+FEV+ V+E+ + GYKEA+A ISG+ V+ +LKFESG+HRVQ
Sbjct: 127 LFGANLFSMYQRFAAKNGWRFEVMEVSETGIGGYKEATATISGIDVFARLKFESGVHRVQ 186
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VA+LP+A+EVD+ + DLRID +RS G GGQ NTT+SAVR+
Sbjct: 187 RVPETEAGGRIHTSAATVAVLPEAEEVDIDIDENDLRIDVFRSSGPGGQSVNTTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQH 325
TH+PTG+ +S QDE+SQH
Sbjct: 247 THMPTGIVVSQQDEKSQH 264
>gi|23502722|ref|NP_698849.1| peptide chain release factor 1 [Brucella suis 1330]
gi|161619787|ref|YP_001593674.1| peptide chain release factor 1 [Brucella canis ATCC 23365]
gi|256370269|ref|YP_003107780.1| peptide chain release factor 1 [Brucella microti CCM 4915]
gi|260567639|ref|ZP_05838109.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40]
gi|261217701|ref|ZP_05931982.1| peptide chain release factor 1 [Brucella ceti M13/05/1]
gi|261316358|ref|ZP_05955555.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|261321452|ref|ZP_05960649.1| peptide chain release factor 1 [Brucella ceti M644/93/1]
gi|261751020|ref|ZP_05994729.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513]
gi|261755581|ref|ZP_05999290.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686]
gi|340791460|ref|YP_004756925.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|376281517|ref|YP_005155523.1| peptide chain release factor 1 [Brucella suis VBI22]
gi|384225509|ref|YP_005616673.1| peptide chain release factor 1 [Brucella suis 1330]
gi|32171563|sp|Q8FYK3.1|RF1_BRUSU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039960|sp|A9M8K5.1|RF1_BRUC2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|23348737|gb|AAN30764.1| peptide chain release factor 1 [Brucella suis 1330]
gi|161336598|gb|ABX62903.1| peptide chain release factor 1 [Brucella canis ATCC 23365]
gi|256000432|gb|ACU48831.1| peptide chain release factor 1 [Brucella microti CCM 4915]
gi|260157157|gb|EEW92237.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40]
gi|260922790|gb|EEX89358.1| peptide chain release factor 1 [Brucella ceti M13/05/1]
gi|261294142|gb|EEX97638.1| peptide chain release factor 1 [Brucella ceti M644/93/1]
gi|261295581|gb|EEX99077.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|261740773|gb|EEY28699.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513]
gi|261745334|gb|EEY33260.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686]
gi|340559919|gb|AEK55157.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94]
gi|343383689|gb|AEM19181.1| peptide chain release factor 1 [Brucella suis 1330]
gi|358259116|gb|AEU06851.1| peptide chain release factor 1 [Brucella suis VBI22]
Length = 359
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/269 (48%), Positives = 188/269 (69%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|381166791|ref|ZP_09876005.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
gi|380684364|emb|CCG40817.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
Length = 358
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 124/238 (52%), Positives = 168/238 (70%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A+ + +KEL L + I R + E+ ++ + S D DM MA EE +
Sbjct: 30 AQIPRLSKELSDLDPVVEAIVTFRKSRDEMAEAAVMMQDASADPDMRAMAEEEFFALKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ + LLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MYERYS KGW+FEV
Sbjct: 90 LPDLERAVQIMLLPKDEADEKNAILEVRAGTGGDEAALFAAELFRMYERYSGLKGWRFEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + G +EASA I+G GV+ +LKFESG HRVQRVP TE SGR+HTSA +VA+LP+
Sbjct: 150 LDANDTGIGGVREASAKITGRGVFARLKFESGAHRVQRVPATEASGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
A+EVD+++ +DLR+D YRS GSGGQ NTT+SAVRVTHIPTG+ ++ Q E+SQH K
Sbjct: 210 AEEVDIQIDEKDLRVDVYRSQGSGGQSVNTTDSAVRVTHIPTGLAVACQQEKSQHKNK 267
>gi|390452279|ref|ZP_10237826.1| peptide chain release factor 1 [Nitratireductor aquibiodomus RA22]
gi|389659935|gb|EIM71674.1| peptide chain release factor 1 [Nitratireductor aquibiodomus RA22]
Length = 359
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 180/243 (74%), Gaps = 9/243 (3%)
Query: 86 PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145
PE P Y K E +L++ I ELR + E+D LKS++ + + DK+M ++A ++
Sbjct: 27 PE--PDVYVKLASEYSELQEVAGKIRELRQAEAELDDLKSMLADPATDKEMRELAEADVE 84
Query: 146 LAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQ 202
E R+++L + LLPKD+AD+++ ILE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 85 GV---EGRIETLGEEMQILLLPKDEADDKNAILEIRAGTGGDEAALFAGDLFRMYERYAA 141
Query: 203 KKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262
+KGW+ EVV V+E + GYKE A +SG GV+ +LKFESG+HRVQRVP TE GR+HTSA
Sbjct: 142 EKGWRVEVVSVSEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSA 201
Query: 263 VSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322
+VA+LP+A+++DV ++ +D+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+
Sbjct: 202 ATVAVLPEAEDIDVDIKPDDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIVV-LQAEK 260
Query: 323 SQH 325
SQH
Sbjct: 261 SQH 263
>gi|426401185|ref|YP_007020157.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
gi|425857853|gb|AFX98889.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
Length = 356
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/224 (54%), Positives = 168/224 (75%), Gaps = 8/224 (3%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-KRLQSLLLKS------- 161
+SE+ +I+ LK E ++ ++D E+ ++ E +R++S L +
Sbjct: 39 LSEITPVVTKIENLKRAWAELADTVALVDSKDAEMNKLVESEIERIKSRLPELERDVQIL 98
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+AD+++ ILEVRAG GG EA+LFA D+F MY+RYSQK+GW+FE++ V+E++L GY
Sbjct: 99 LLPKDEADKKNVILEVRAGIGGNEAALFAADLFSMYQRYSQKRGWRFEIMNVSENELDGY 158
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KEA A+I+GVGVY LKFESG HRVQRVP+TE GR+HTSA +VA+LP+A E+DV + +
Sbjct: 159 KEAIASITGVGVYACLKFESGTHRVQRVPVTENQGRIHTSAATVAVLPEAKEIDVHIEEK 218
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
D+RID YRS G+GGQH NTT+SAVR+THIPTG+ ++ QDE+SQH
Sbjct: 219 DIRIDVYRSRGAGGQHVNTTDSAVRITHIPTGVVVTQQDEKSQH 262
>gi|395792483|ref|ZP_10471910.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713144|ref|ZP_17687404.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423800|gb|EJF89989.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432456|gb|EJF98442.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 359
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/266 (48%), Positives = 186/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P A Y K E +L+ + I L +E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAQSPNAET--YVKLASEYAELQPIVSPIRALNALYRE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKLTDIEMRNLAQEELPLLHQKIEQFEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R+ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|294010049|ref|YP_003543509.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
gi|292673379|dbj|BAI94897.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
Length = 363
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 181/266 (68%), Gaps = 2/266 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVAKAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLPKD AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADSDPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ GYKE A+++G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+TH+P+G+ ++ QDERSQH
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQH 266
>gi|427409351|ref|ZP_18899553.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
gi|425711484|gb|EKU74499.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
Length = 363
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 181/269 (67%), Gaps = 2/269 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ ELR ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVARAAHELRRLRQELR 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEESDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVK 328
TT+SAVR+TH+PTG+ ++ QDERSQH K
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQHKNK 269
>gi|13472970|ref|NP_104537.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099]
gi|20139342|sp|Q98G93.1|RF1_RHILO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|14023718|dbj|BAB50323.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099]
Length = 359
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 126/252 (50%), Positives = 180/252 (71%), Gaps = 9/252 (3%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y K E +L+D + + +LR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVKMASEYAELQDMVAKVRQLRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+A +L D E+R+++L + LLPKD AD+++ ILE+RAGTGG+EA+LFA D+
Sbjct: 76 RALAEADLP---DVEERIEALQKDIQILLLPKDAADDKNAILEIRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYERY+ ++GW+FE V ++ D G+KE A +SG GV+ LKFESG+HRVQRVP TE
Sbjct: 133 FRMYERYAAERGWRFETVSASDGDAGGFKEIIATVSGKGVFAHLKFESGVHRVQRVPATE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG
Sbjct: 193 ASGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTG 252
Query: 314 MTISIQDERSQH 325
+ + +Q E+SQH
Sbjct: 253 IMV-VQAEKSQH 263
>gi|144897745|emb|CAM74609.1| peptide chain release factor RF-1 [Magnetospirillum gryphiswaldense
MSR-1]
Length = 352
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 170/233 (72%), Gaps = 4/233 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+++ +KE + +H + L+ + ++ ++++ D DM D+A EE +
Sbjct: 29 FARLSKEFSDIEPVVHAVQALKKARADMAEAEAMM----ADPDMKDLAAEEYYALKETLP 84
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD+ADE++ ILEVRAGTGGEEA+LFA ++F+MYERY+ +GW+FEV+
Sbjct: 85 GLERDVQLMLLPKDEADEKNAILEVRAGTGGEEAALFAAELFRMYERYASVRGWRFEVMD 144
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E+ + G KEASA I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VAI+P+A+
Sbjct: 145 VNETGIGGMKEASATITGRGVFARLKFESGVHRVQRVPATESGGRIHTSAATVAIMPEAE 204
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVD+++ ++DLR D YRS GSGGQ NTT+SAVRVTHIPTG+ ++ Q E+SQH
Sbjct: 205 EVDIQIDDKDLRFDVYRSQGSGGQSVNTTDSAVRVTHIPTGLAVACQQEKSQH 257
>gi|299132853|ref|ZP_07026048.1| peptide chain release factor 1 [Afipia sp. 1NLS2]
gi|298592990|gb|EFI53190.1| peptide chain release factor 1 [Afipia sp. 1NLS2]
Length = 358
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 175/252 (69%), Gaps = 3/252 (1%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q S Y +A +EL ++ + + R EI L+++I + + D
Sbjct: 13 RHAALEAELMAQ--VSAETYVRATRELAEISPVVEAVKAYRAGASEIADLEAMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
DM MA E + ++ ++ L+ + +LLPKD DER+ +LE+RAGTGG+EASLFA D+
Sbjct: 71 ADMRAMAESERPVLLERQESLEQQIRVALLPKDAMDERNVVLEIRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVMSASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A++VD+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEDVDIDIKDSDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQH 325
+ + +QD RSQH
Sbjct: 251 IVVMMQDSRSQH 262
>gi|373450051|ref|ZP_09542126.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
gi|371932744|emb|CCE77114.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
Length = 363
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 180/252 (71%), Gaps = 7/252 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNMLKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKILLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMVK 328
QDE+SQH K
Sbjct: 257 IQQDEKSQHKNK 268
>gi|190570518|ref|YP_001974876.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019274|ref|ZP_03335081.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238054477|sp|B3CL87.1|RF1_WOLPP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|190356790|emb|CAQ54152.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995383|gb|EEB56024.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 363
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 180/252 (71%), Gaps = 7/252 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKIVLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMVK 328
QDE+SQH K
Sbjct: 257 IQQDEKSQHKNK 268
>gi|353327645|ref|ZP_08969972.1| peptide chain release factor 1 [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 363
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 180/252 (71%), Gaps = 7/252 (2%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140
NL N S E+ +KE +LR + +I E ++EI L+ ++ + + D D+ ++A
Sbjct: 20 NLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEISDLEEIMKDENSDGDIKELA 79
Query: 141 TEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
EEL ++++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+LFA +F+M
Sbjct: 80 KEEL---LEKQKILLPKVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAALFAAMLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQRVP TE SG
Sbjct: 137 YQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VAILP+ +EVD + +DLRID YRS G GGQ NTT+SAVRVTH+PTG+ +
Sbjct: 197 RLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTGIVV 256
Query: 317 SIQDERSQHMVK 328
QDE+SQH K
Sbjct: 257 IQQDEKSQHKNK 268
>gi|319407578|emb|CBI81228.1| peptide chain release factor 1 [Bartonella sp. 1-1C]
Length = 359
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 185/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + +KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIAPIRTLNSLRKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIISDIQTDTEMRNLAQEELSSLSQKIQELEKELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA ++F+MYERY+ WK E++ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R+ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|359789213|ref|ZP_09292167.1| peptide chain release factor 1 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254954|gb|EHK57912.1| peptide chain release factor 1 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 358
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 126/249 (50%), Positives = 173/249 (69%), Gaps = 3/249 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A P Y K E ++D + I ELR ++E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPDADAYVKMASEYSDIQDMVTKIRELRAAEQEEADLQAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A EL + + LQ + LLP+D ADE++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RSLAEAELPAVEERIEALQKDIQILLLPRDAADEKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ +GWK EV +E + GYKE A +SG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAARGWKMEVASASEGEAGGYKEIIATVSGRGVFAHLKFESGVHRVQRVPETEGSG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R+ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIEIRSEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQH 325
+Q E+SQH
Sbjct: 256 -VQAEKSQH 263
>gi|163843895|ref|YP_001628299.1| peptide chain release factor 1 [Brucella suis ATCC 23445]
gi|189039961|sp|B0CIC3.1|RF1_BRUSI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163674618|gb|ABY38729.1| peptide chain release factor 1 [Brucella suis ATCC 23445]
Length = 359
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 187/269 (69%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE +SG GV+ K
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIITTVSGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|288956982|ref|YP_003447323.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
gi|288909290|dbj|BAI70779.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
Length = 361
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 170/245 (69%), Gaps = 4/245 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY----ECSEDKDMLDMATEE 143
A ++++ +KE L I+EL+ + E L +I + D +M MA EE
Sbjct: 26 AESGDFARLSKEYADLTPIAAAIAELKRGRAEAADLAEMIAAMMGDSGADPEMRSMAEEE 85
Query: 144 LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQK 203
L L+ + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+
Sbjct: 86 FHLLTKRIPELERKVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGL 145
Query: 204 KGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAV 263
GW+FE + V+E+ + GYKEA+A I+G GV+ KLKFESG+HRVQRVP TE GR+HTSA
Sbjct: 146 HGWRFEAMDVSETGIGGYKEATANITGRGVFAKLKFESGVHRVQRVPATEAQGRIHTSAA 205
Query: 264 SVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERS 323
+VA+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+S
Sbjct: 206 TVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKS 265
Query: 324 QHMVK 328
QH K
Sbjct: 266 QHKNK 270
>gi|261758813|ref|ZP_06002522.1| peptide chain release factor 1 [Brucella sp. F5/99]
gi|261738797|gb|EEY26793.1| peptide chain release factor 1 [Brucella sp. F5/99]
Length = 359
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 187/269 (69%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+I + + R+ + +R + +E+ + N P++ Y K E +L+D + I EL + E
Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDT--YVKLASEYSELQDVVGKIRELSDARME 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILE 176
L ++ + S D +M +A EEL + EKR+ L + LLPKD AD+++ ILE
Sbjct: 59 ASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKDAADDKNAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+
Sbjct: 116 IRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFST 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|239832947|ref|ZP_04681276.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301]
gi|444311554|ref|ZP_21147161.1| peptide chain release factor 1 [Ochrobactrum intermedium M86]
gi|239825214|gb|EEQ96782.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301]
gi|443485113|gb|ELT47908.1| peptide chain release factor 1 [Ochrobactrum intermedium M86]
Length = 357
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 181/257 (70%), Gaps = 9/257 (3%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
++R S + N P++ Y K E +L++ + I EL ++E L ++ + +
Sbjct: 13 LKRFSMIESQMANNPDSET--YVKLASEYSELQEVVGKIRELTDARREAVDLAAMRDDAA 70
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCILEVRAGTGGEEASL 188
D +M +A EEL + EKR+ +L + LLPKD ADE++ ILE+RAGTGG EA+L
Sbjct: 71 TDAEMRALALEELP---EVEKRIGTLEQEVQILLLPKDAADEKNAILEIRAGTGGLEAAL 127
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MYERY+ +KGW+ E+V +E D GYKE A +SG GV+ KLKFESG+HRVQR
Sbjct: 128 FAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFESGVHRVQR 187
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VA+LP+A+++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+T
Sbjct: 188 VPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRIT 247
Query: 309 HIPTGMTISIQDERSQH 325
HIPTG+ + +Q E+SQH
Sbjct: 248 HIPTGIMV-VQAEKSQH 263
>gi|381199262|ref|ZP_09906412.1| peptide chain release factor 1 [Sphingobium yanoikuyae XLDN2-5]
Length = 363
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/269 (46%), Positives = 181/269 (67%), Gaps = 2/269 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVARAAHEVRRLRQELR 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEDSDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVK 328
TT+SAVR+TH+PTG+ ++ QDERSQH K
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQHKNK 269
>gi|42520141|ref|NP_966056.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58698355|ref|ZP_00373269.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|81652805|sp|Q73IC2.1|RF1_WOLPM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|42409878|gb|AAS13990.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58535109|gb|EAL59194.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 359
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 187/271 (69%), Gaps = 12/271 (4%)
Query: 65 MEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
ME + ++++ +E NL N S E+ +KE +LR + +I E T ++EI L
Sbjct: 3 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 62
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEK------RLQSLLLKSLLPKDDADERDCILEV 177
+ ++ + + + D+ ++A EE EK ++++ L +LLPKD+ D R+ ILE+
Sbjct: 63 EEIMKDENSEGDIKELAKEEFF-----EKHKVLLPKIKAKLKLALLPKDEDDSRNAILEI 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +L
Sbjct: 118 RAGTGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
NTT+SAVRVTH+PTG+ + QDE+SQH K
Sbjct: 238 VNTTDSAVRVTHLPTGIVVIQQDEKSQHKNK 268
>gi|332188246|ref|ZP_08389974.1| peptide chain release factor 1 [Sphingomonas sp. S17]
gi|332011745|gb|EGI53822.1| peptide chain release factor 1 [Sphingomonas sp. S17]
Length = 357
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 180/262 (68%), Gaps = 2/262 (0%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L+ ++ + + +KE +L + +E+R ++E D L
Sbjct: 4 ISAERIAQIEARRDELQAMMATGDLPSDRFVAVSKEYAELEPVANAAAEVRRLRQEADSL 63
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
+ + D ++ ++A EEL L +LLP+D ADER +LE+RAGTGG
Sbjct: 64 TFMTQDG--DDELRELAAEELHANRTALAAADRHLALALLPRDAADERAAMLEIRAGTGG 121
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F+MY+RY++++GW+ EV+ + D GYKE A+++G GV+ KLKFESG+
Sbjct: 122 DEAALFAGDLFRMYQRYAERQGWRVEVISASIPDTGGYKEVVASVAGAGVFAKLKFESGV 181
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP+TE GR+HTSA +VA+LP+A+EVD+++ ++DLRID YRS G+GGQH NTT+S
Sbjct: 182 HRVQRVPVTESGGRIHTSAATVAVLPEAEEVDLQIDDKDLRIDIYRSSGAGGQHVNTTDS 241
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
A+R+THIPTG+ + QDERSQH
Sbjct: 242 AIRITHIPTGLVVIQQDERSQH 263
>gi|225630064|ref|YP_002726855.1| peptide chain release factor 1 [Wolbachia sp. wRi]
gi|225592045|gb|ACN95064.1| peptide chain release factor 1 [Wolbachia sp. wRi]
Length = 357
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 187/271 (69%), Gaps = 12/271 (4%)
Query: 65 MEQRVLAIERRSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
ME + ++++ +E NL N S E+ +KE +LR + +I E T ++EI L
Sbjct: 1 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEK------RLQSLLLKSLLPKDDADERDCILEV 177
+ ++ + + + D+ ++A EE EK ++++ L +LLPKD+ D R+ ILE+
Sbjct: 61 EEIMKDENSEGDIKELAKEEFF-----EKHKVLLPKIKAKLKLALLPKDEDDSRNAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +L
Sbjct: 116 RAGTGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ
Sbjct: 176 KFESGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
NTT+SAVRVTH+PTG+ + QDE+SQH K
Sbjct: 236 VNTTDSAVRVTHLPTGIVVIQQDEKSQHKNK 266
>gi|147679165|ref|YP_001213380.1| protein chain release factor A [Pelotomaculum thermopropionicum SI]
gi|189039982|sp|A5CYC3.1|RF1_PELTS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146275262|dbj|BAF61011.1| protein chain release factor A [Pelotomaculum thermopropionicum SI]
Length = 349
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 187/270 (69%), Gaps = 9/270 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
M +++ +IE++ LENL+ PE A EY KA+ EL D + + + + KE
Sbjct: 1 MIEKLDSIEKKYEELENLIGNPEIIADIARWQEYVKAHAELA---DIVAVYRDYKKVVKE 57
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I +L+ E D+D+ +MA EL +++ L++ L LLPKD DE++ ILE+RA
Sbjct: 58 IQDTIALMKE-EPDEDLREMAQAELDELTEKKDNLENRLKMLLLPKDPNDEKNVILEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++++GW+ E++ +D+ G+KE + I G GVY ++KF
Sbjct: 117 GTGGEEAALFAADLFRMYSRYAERQGWRTEILDANYTDIGGFKEVISLIEGKGVYSRMKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+EVDV++ +DLRID + S G GGQ N
Sbjct: 177 ESGVHRVQRIPTTESGGRIHTSAATVAVLPEAEEVDVQIDPDDLRIDVFCSSGHGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
TT SAVR+THIPTG+ +S+QDE+SQH K+
Sbjct: 237 TTQSAVRITHIPTGIVVSMQDEKSQHKNKE 266
>gi|390169627|ref|ZP_10221560.1| peptide chain release factor 1 [Sphingobium indicum B90A]
gi|389587631|gb|EIM65693.1| peptide chain release factor 1 [Sphingobium indicum B90A]
Length = 363
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 182/266 (68%), Gaps = 2/266 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P E+ + +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVAKAAHEVRRLRQELS 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + L LLP+D AD R +LE+RA
Sbjct: 61 ALEYMAGGEDADADPLMREMAQEEMQLIKSRLPDAERALALQLLPRDAADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S++ G+KE A+++G+GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGFKEVVASVTGIGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VA+LP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+TH+P+G+ ++ QDERSQH
Sbjct: 241 TTDSAVRITHLPSGIVVTQQDERSQH 266
>gi|148555445|ref|YP_001263027.1| peptide chain release factor 1 [Sphingomonas wittichii RW1]
gi|166223608|sp|A5V9C3.1|RF1_SPHWW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148500635|gb|ABQ68889.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingomonas
wittichii RW1]
Length = 360
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 186/268 (69%), Gaps = 6/268 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I R+ IE R L+ L+ + + ++ + +K+ ++ E+R + E+D L
Sbjct: 4 ITSARIAQIEARRDELQALMARGDLPSDQFVQLSKDYAEIEPVAQAAGEVRRLRAELDVL 63
Query: 124 KSLIYECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
K + + + D ++ MA EE+ + E +R +L LK LLP+D ADER +LE+RAG
Sbjct: 64 KGMAEDEAGDAELRAMAIEEAEEIRARLPEAER--ALALK-LLPRDAADERSAMLEIRAG 120
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + +DL GYKE A+++G GV+ +LKFE
Sbjct: 121 TGGDEAALFAGDLFRMYQRYAEDRGWRVELISASAADLGGYKEVVASVTGAGVFARLKFE 180
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + ++DLRID YRS G GGQ NT
Sbjct: 181 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVHIDDKDLRIDVYRSSGPGGQSVNT 240
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVK 328
T+SAVR+TH+PTG+ + QDE+SQH K
Sbjct: 241 TDSAVRITHLPTGLVVIQQDEKSQHKNK 268
>gi|103488191|ref|YP_617752.1| peptide chain release factor 1 [Sphingopyxis alaskensis RB2256]
gi|119361612|sp|Q1GPK3.1|RF1_SPHAL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|98978268|gb|ABF54419.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingopyxis
alaskensis RB2256]
Length = 355
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 177/265 (66%), Gaps = 4/265 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ + +++ AI R A L+ + + +PA++ A+KE +L E+ ++E+
Sbjct: 1 MTSVSARQIDAIIERHAALQARMATGDMAPADFVAASKEFAELEPVATAAREVVRLREEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L ++ D +M MA EE+ + L LLPKD AD R +LE+RAG
Sbjct: 61 VALNEMLA----DPEMKAMAVEEIAAVEAALPAAEHDLALQLLPKDVADSRAAMLEIRAG 116
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+ +MY RY+ +GWK E++ E+++ GYKE A++SG GV+ KLKFE
Sbjct: 117 TGGDEAALFAGDLLRMYSRYADTQGWKVEIISANEAEVGGYKEVVASVSGQGVFAKLKFE 176
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + + DL+ID YR+ G+GGQH NT
Sbjct: 177 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAINDSDLKIDIYRASGAGGQHVNT 236
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 237 TDSAIRITHIPTGLVVIQQDQRSQH 261
>gi|395791488|ref|ZP_10470946.1| peptide chain release factor 1 [Bartonella alsatica IBS 382]
gi|395408851|gb|EJF75461.1| peptide chain release factor 1 [Bartonella alsatica IBS 382]
Length = 359
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 184/266 (69%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P+A Y K E +L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDAET--YVKLASEYAELQPIVASIRTLNDLSAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M D+A EEL L + ++ + L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIINDKLTDIEMRDLAQEELPLLNQKIEQFEQKLQILLLPKDIADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MY RY+ WK E+V + E ++ GYKE A+ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYARYADAHNWKVEIVSLNEGEVGGYKEIIASISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+++R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIKIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|56416889|ref|YP_153963.1| peptide chain release factor 1 [Anaplasma marginale str. St.
Maries]
gi|222475254|ref|YP_002563670.1| peptide chain release factor 1 [Anaplasma marginale str. Florida]
gi|255003238|ref|ZP_05278202.1| peptide chain release factor 1 [Anaplasma marginale str. Puerto
Rico]
gi|255004365|ref|ZP_05279166.1| peptide chain release factor 1 [Anaplasma marginale str. Virginia]
gi|81599140|sp|Q5PAH2.1|RF1_ANAMM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790858|sp|B9KIV2.1|RF1_ANAMF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56388121|gb|AAV86708.1| peptide chain release factor 1 [Anaplasma marginale str. St.
Maries]
gi|222419391|gb|ACM49414.1| peptide chain release factor 1 (prfA) [Anaplasma marginale str.
Florida]
Length = 359
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 173/248 (69%), Gaps = 1/248 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M LI E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLIEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQH 325
QDE+SQH
Sbjct: 257 QQDEKSQH 264
>gi|240849863|ref|YP_002971251.1| peptide chain release factor 1 [Bartonella grahamii as4aup]
gi|240266986|gb|ACS50574.1| peptide chain release factor 1 [Bartonella grahamii as4aup]
Length = 358
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/269 (47%), Positives = 183/269 (68%), Gaps = 9/269 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L D ++ +E+R IER+ + P A Y K E +L+ + I L
Sbjct: 4 LPQDRMRQLEKRFEIIERQ------MTTNPNAET--YVKLASEYAELQPVIASIRALNAL 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
KEI L+++I + D +M ++A EEL L + ++ + L LLPKD ADE++ I+E
Sbjct: 56 YKEITELETIINDKQTDVEMRNLAQEELPLLYKKVEQFEKELQILLLPKDVADEKNAIVE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ K
Sbjct: 116 IRAGTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQ
Sbjct: 176 LKYESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|254995073|ref|ZP_05277263.1| peptide chain release factor 1 [Anaplasma marginale str.
Mississippi]
Length = 359
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 173/248 (69%), Gaps = 1/248 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M L+ E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAKEELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQH 325
QDE+SQH
Sbjct: 257 QQDEKSQH 264
>gi|398382459|ref|ZP_10540544.1| peptide chain release factor 1 [Sphingobium sp. AP49]
gi|397726565|gb|EJK86998.1| peptide chain release factor 1 [Sphingobium sp. AP49]
Length = 363
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 180/266 (67%), Gaps = 2/266 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ IE R ++ + + + +P + K +KE ++ E+R ++E+
Sbjct: 1 MHISAERIAQIEARRDEVQASMTRADLAPDAFVKLSKEYAEIEPVAKAAHEVRRLRQELR 60
Query: 122 GLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
L+ + D D M +MA EE+ L + + L LLPKD AD R +LE+RA
Sbjct: 61 ALEQMAGGEDSDADPLMREMAQEEMQLLKGQLPDAERALALQLLPKDSADARPAMLEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY+RY+ +GWK E++ S+ G+KE A+I+G GV+ KLKF
Sbjct: 121 GTGGDEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGTGVFAKLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP+TE GR+HTSA +VAILP+ +EVDV++ + DL+ID YR+ G+GGQH N
Sbjct: 181 ESGVHRVQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADGDLKIDIYRASGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+TH+PTG+ ++ QDERSQH
Sbjct: 241 TTDSAVRITHLPTGIVVTQQDERSQH 266
>gi|49475009|ref|YP_033050.1| peptide chain release factor 1 [Bartonella henselae str. Houston-1]
gi|61214620|sp|Q6G5T7.1|RF1_BARHE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49237814|emb|CAF27009.1| Peptide chain release factor 1 [Bartonella henselae str. Houston-1]
Length = 359
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAEI--YVKLASEYAELQPIVSSIRALNALYGE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITDLETIISDKLTDVEMRTLAQEELPLLCQKMEQLEQKLQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ + WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASRNWKVEVVSLNEGEVGGYKEIIATISGRGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|58584615|ref|YP_198188.1| peptide chain release factor 1 [Wolbachia endosymbiont strain TRS
of Brugia malayi]
gi|75497913|sp|Q5GSS8.1|RF1_WOLTR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|58418931|gb|AAW70946.1| Protein chain release factor A [Wolbachia endosymbiont strain TRS
of Brugia malayi]
Length = 359
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/261 (49%), Positives = 185/261 (70%), Gaps = 13/261 (4%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
IER+ LEN N S E+ +KE +LR + +I+E T +KEI L+ +I + +
Sbjct: 17 IERK---LENPTN---LSQKEFINLSKEYSELRPIIKIINEYDTLKKEILDLEEIIKDEN 70
Query: 132 EDKDMLDMATEELCLAIDEEK----RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ D+ ++A EE +++K ++++ L +LLPKD+ D R+ ILE+RAGTGGEEA+
Sbjct: 71 SEYDIKELAKEEF---FEKQKVLLPQVKAKLKLALLPKDEDDSRNAILEIRAGTGGEEAA 127
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA +F+MY++Y++++ WKFE + ++ + + GYKEASA I+G V+ +LKFESG+HRVQ
Sbjct: 128 LFAAMLFRMYQKYAERRNWKFEPISISSTGIGGYKEASALINGTEVFARLKFESGVHRVQ 187
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE SGR+HTSA +VAILP+ +EVD ++ +DLRID YRS G GGQ NTT+SAVRV
Sbjct: 188 RVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAVRV 247
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PT M + QDE+SQH K
Sbjct: 248 THLPTEMVVIQQDEKSQHKNK 268
>gi|320169793|gb|EFW46692.1| peptide chain release factor 1 [Capsaspora owczarzaki ATCC 30864]
Length = 523
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 161/218 (73%), Gaps = 2/218 (0%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDD 167
+ + K+K+ID L +++ + D M MA E A+++ L+ LL L+PK++
Sbjct: 198 LQRMTAKRKDIDDLDAMVEASRNENDVEMRKMAQSEWTDAVEQLYELEQELLNVLVPKNE 257
Query: 168 ADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAA 227
D+R+ ILEVRAGTGG EASLF+ D+F MY+ Y++ +GWKFEV+ ++ SD+ G+KEASA
Sbjct: 258 VDDRNAILEVRAGTGGLEASLFSSDMFTMYQNYAEIRGWKFEVIDISRSDVGGFKEASAT 317
Query: 228 ISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDT 287
ISG GV+G LKFESG+HRVQRVP TE GRVHTS V+VA+LP+A +VD+ L DLRI+T
Sbjct: 318 ISGYGVFGHLKFESGVHRVQRVPQTESQGRVHTSTVTVALLPEAQDVDIELNERDLRIET 377
Query: 288 YRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
R+ G+GGQH N T SA+RVTHIP+G+ + +Q++RSQH
Sbjct: 378 MRASGAGGQHVNKTESAIRVTHIPSGIAVHVQEDRSQH 415
>gi|303326242|ref|ZP_07356685.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3]
gi|345891915|ref|ZP_08842743.1| peptide chain release factor 1 [Desulfovibrio sp. 6_1_46AFAA]
gi|302864158|gb|EFL87089.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3]
gi|345047775|gb|EGW51634.1| peptide chain release factor 1 [Desulfovibrio sp. 6_1_46AFAA]
Length = 356
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/266 (48%), Positives = 177/266 (66%), Gaps = 4/266 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ Y K K LR+ + L R Q+E+
Sbjct: 1 MFAKLEGLEKKYMELEEALAQPDVFNDQEHYRKLTKAHADLREIVDLFRRHRALQQEMAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+++ ED D+ DMA EE+ A E R++ L +LLP D DE++ ILE+RAGTG
Sbjct: 61 NKQLLHD--EDPDIRDMAHEEIRRAESELPRIEQALKVALLPTDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ +GWK E++ + S+ GYKE I+G VY +LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAELQGWKVEIMSESPSESGGYKEIICLIAGDRVYSRLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVR+TH+PT ++ QDERSQH K
Sbjct: 239 SAVRITHLPTNTVVTCQDERSQHKNK 264
>gi|269958696|ref|YP_003328483.1| peptide chain release factor 1 [Anaplasma centrale str. Israel]
gi|269848525|gb|ACZ49169.1| peptide chain release factor 1 [Anaplasma centrale str. Israel]
Length = 359
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 173/248 (69%), Gaps = 1/248 (0%)
Query: 79 LENLVNQPEASPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L+ ++ PE+ + + A++E L M L+ E +T QKEI+ L+ LI D +++
Sbjct: 17 LKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIEELEGLINSTDTDAELV 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EEL +L+ L SLLPKD D R ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 HLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGTGGEEAALFVCDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WK E +G++ + + GYKEAS I G V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFESGVHRVQRVPETESSGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ +
Sbjct: 197 LHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVI 256
Query: 318 IQDERSQH 325
QDE+SQH
Sbjct: 257 QQDEKSQH 264
>gi|393722766|ref|ZP_10342693.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26605]
Length = 357
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 178/265 (67%), Gaps = 2/265 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I +R+L IE R L L+ + + + +K+ +L E+R + E+
Sbjct: 1 MTSISPERILQIEARRDELSALMASGDLPSDRFVQVSKDYAELEPIARAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
D L + E D ++ MA EE+ D + L SLLP+D ADER +LE+RAG
Sbjct: 61 DVLAGM--EEESDPEIKLMAREEIATIRDTLPDAERALALSLLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAEAQGWRVELISASSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SAVR+ HIPTG+T+ QDE+SQH
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQH 263
>gi|374293217|ref|YP_005040252.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
gi|357425156|emb|CBS88039.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
Length = 374
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 170/242 (70%), Gaps = 4/242 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY----ECSEDKDMLDMATEELCL 146
++++ +KE L I+EL+ + E L +I + S D +M MA EE L
Sbjct: 42 GDFARLSKEYADLTPIAEAIAELKKGRAEAADLAEMISAMMGDPSADPEMKAMAEEEFHL 101
Query: 147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
L+ + SLLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ GW
Sbjct: 102 LAKRIPDLERKVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGLHGW 161
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
+FE + V+E+ + GYKEA+A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 162 RFEAMDVSETGIGGYKEATANITGRGVFARLKFESGVHRVQRVPATEAQGRIHTSAATVA 221
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 222 VLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHK 281
Query: 327 VK 328
K
Sbjct: 282 NK 283
>gi|418410195|ref|ZP_12983505.1| peptide chain release factor 1 [Agrobacterium tumefaciens 5A]
gi|358003754|gb|EHJ96085.1| peptide chain release factor 1 [Agrobacterium tumefaciens 5A]
Length = 360
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 181/267 (67%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + + E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKVREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E GL++L+ + + DKDM D+A EL +L+ + LLPKD ADE+ ILE+R
Sbjct: 58 EAAGLQALLADKTTDKDMRDLAEMELPEVEARIGQLEKEMQVLLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFASAKGWKVEVLSASEGEAGGYKEIIATISGRGVFSKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+GGQH
Sbjct: 178 FESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 238 NTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|209883257|ref|YP_002287114.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|337739650|ref|YP_004631378.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|386028668|ref|YP_005949443.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM4]
gi|229470351|sp|B6JA06.1|RF1_OLICO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|209871453|gb|ACI91249.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
gi|336093736|gb|AEI01562.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM4]
gi|336097314|gb|AEI05137.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5]
Length = 358
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 173/252 (68%), Gaps = 3/252 (1%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q A Y +A +EL +L + + R E+ L ++I + + D
Sbjct: 13 RHAALEAELLGQLNAEA--YVRATRELAELTPVVDAVKAYRAGASELSDLDAMIDDPTTD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E + + ++ L+ + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 AEMRAMAESERPVLQERQENLEQQIRIALLPKDAMDERNVVLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVISASEGTVGGYKEIVAQVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+E+D+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEEIDIDIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQH 325
+ + +QD RSQH
Sbjct: 251 IVVMMQDSRSQH 262
>gi|395787116|ref|ZP_10466717.1| peptide chain release factor 1 [Bartonella birtlesii LL-WM9]
gi|395411540|gb|EJF78061.1| peptide chain release factor 1 [Bartonella birtlesii LL-WM9]
Length = 359
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/266 (48%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + Q P+A Y K E +L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAQNPDAET--YVKLASEYAELQPIIASIRTLNALYAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+ +I + D +M +A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELEIIINDKLTDAEMRYLAQEELALLCQKMEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIAGISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|389695992|ref|ZP_10183634.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
gi|388584798|gb|EIM25093.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
Length = 362
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 165/236 (69%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
P + ++EL +L + I R + ++GL++LI + S D +M +A +EL A +
Sbjct: 30 PETFVALSRELAELDGVVSAIRAYRAMEDNLNGLQALIDDASTDAEMRSLAEDELPQARE 89
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
+ +R L LLPKD+ADE+ ILE+RAGTGG+EA+LFA D+ +MY RY+ KGWK E
Sbjct: 90 DLERAAQDLRIMLLPKDEADEKSAILEIRAGTGGDEAALFAGDLLRMYTRYADLKGWKVE 149
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
+V +E GYKE A I G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 150 IVSESEGTAGGYKEVVAEIKGRGVFARLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 209
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+A++VDV L + DL+IDT R+ G+GGQH N T SA+R+THIPTG + +QDERSQH
Sbjct: 210 EAEDVDVVLNDADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGTVVFVQDERSQH 265
>gi|319781345|ref|YP_004140821.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167233|gb|ADV10771.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 359
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 173/249 (69%), Gaps = 3/249 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y + E +++D + + LR + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVRMASEYAEIQDMVAKVRALRAAEHEQADLEAMLADRGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A EL D + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEAELPGVEDRIEALQKDIQILLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ ++GW+FE ++ D GYKE A +SG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAERGWRFETASASDGDAGGYKEIIATVSGKGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQH 325
+Q E+SQH
Sbjct: 256 -VQAEKSQH 263
>gi|395767004|ref|ZP_10447542.1| peptide chain release factor 1 [Bartonella doshiae NCTC 12862]
gi|395415616|gb|EJF82050.1| peptide chain release factor 1 [Bartonella doshiae NCTC 12862]
Length = 359
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 183/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIITSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL L + ++L+ L LLPKD ADE++ I+E+RA
Sbjct: 59 ITELETIIRDKLTDVEMRILAQEELPLLYQKVEQLEKELQILLLPKDIADEKNAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A +SG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYACTHHWKVEVVSLNEGEVGGYKEIIATVSGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|296282001|ref|ZP_06859999.1| peptide chain release factor 1 [Citromicrobium bathyomarinum JL354]
Length = 355
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 181/264 (68%), Gaps = 4/264 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ I R A +E + + E+ +A+++ +L L EL+ ++E+
Sbjct: 1 MTIPPERLDQIANRFAEIEARMASGQLEGEEFVQASRDYAELEPVAKLALELKAAREEVA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL ++ D +M DMA EEL L+ L ++LP+D AD + +LE+RAGT
Sbjct: 61 GLDEMLA----DPEMRDMAEEELEALNQRIPELEQQLAVAMLPRDSADAKPAMLEIRAGT 116
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E V ++ S++ G+KE A ++G GV+ KLKFES
Sbjct: 117 GGDEAALFAGDLYRMYERFAGEQGWKVEPVSMSASEVGGFKEIVAHVTGTGVFAKLKFES 176
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH NTT
Sbjct: 177 GVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQVDPGDLKIDTYRASGAGGQHVNTT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SA+R+TH+PTG+ ++ QD RSQH
Sbjct: 237 DSAIRITHLPTGLVVTCQDGRSQH 260
>gi|85713812|ref|ZP_01044802.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
gi|85699716|gb|EAQ37583.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
Length = 358
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 170/252 (67%), Gaps = 3/252 (1%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LEN L++ A Y + +EL +L + + + R EI G+ ++I + + D
Sbjct: 13 RHAALENELLSHVSAD--RYVQMTRELAELNPVVEAVKDWRAITAEIAGIDAMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E L + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 AEMRAMAEAERPALEARNNELMQQIRIALLPKDAMDERNVMLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G Y K+KFESG+HRVQRVP TE
Sbjct: 131 FRMYERFAALQGWKVEVISASEGTMGGYKEIVAEVQGRGAYAKMKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GRVHTSA +VA+LP+A+EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 AQGRVHTSAATVAVLPEAEEVDVEIKPDDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQH 325
+ +++QD RSQH
Sbjct: 251 IVVNMQDSRSQH 262
>gi|433773052|ref|YP_007303519.1| peptide chain release factor 1 [Mesorhizobium australicum WSM2073]
gi|433665067|gb|AGB44143.1| peptide chain release factor 1 [Mesorhizobium australicum WSM2073]
Length = 359
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 176/249 (70%), Gaps = 3/249 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y + E +L++ + + ELR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVRMASEYAELQEMVAKVRELRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A +L + + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEADLPGVEERIETLQKDIQILLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ ++GW+FE V ++ D G+KE A ISG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAERGWRFETVSASDGDAGGFKEIIATISGKGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQH 325
+Q E+SQH
Sbjct: 256 -VQAEKSQH 263
>gi|389876238|ref|YP_006369803.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
gi|388527022|gb|AFK52219.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
Length = 362
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 169/250 (67%), Gaps = 12/250 (4%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
L + A +Y + ++E L + + R +E+ + + + + D +M +A
Sbjct: 21 LADPAIAGSGDYVRLSREFAGLDELAQAVRRQREVARELAEARVMAGDPAADAEMRALAE 80
Query: 142 EEL------CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
EE C A+D R+ LLP+D+AD+R ILE+RAGTGGEEA+LFA D+F+
Sbjct: 81 EECRSLEAECQALDRSVRVM------LLPRDEADDRSAILEIRAGTGGEEAALFAADLFR 134
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY+RY+Q+ GW+ ++ TESDL G++E A I G GVYG+LKFESG+HRVQRVP TE
Sbjct: 135 MYQRYAQEAGWRVSLLQATESDLGGFREVVAEIEGAGVYGRLKFESGVHRVQRVPETEAQ 194
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GR+HTSA +VAILP+A+EVD+ + DL+ID +R+ G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 195 GRIHTSAATVAILPEAEEVDIAIDPADLKIDVFRASGAGGQHVNTTDSAVRITHLPTGIV 254
Query: 316 ISIQDERSQH 325
+ QDERSQH
Sbjct: 255 VVQQDERSQH 264
>gi|406990113|gb|EKE09797.1| hypothetical protein ACD_16C00105G0010 [uncultured bacterium]
Length = 359
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 184/259 (71%), Gaps = 12/259 (4%)
Query: 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
E+ S+ +EN P+E++K +KE L I E + ++ L+ L+ + S
Sbjct: 19 EKLSSVVEN--------PSEFAKLSKEYSDLTPVAEKIMEWQLLNRDHKNLEELLKDPSL 70
Query: 133 DKDMLDMATEELCLAIDEE--KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
DK++ DMA ++L +I E+ KRL + L LLPKD D+++ ILEVRAGTGGEEA+LFA
Sbjct: 71 DKELKDMACDDLQ-SIHEKLPKRLHEIKL-LLLPKDVDDDKNAILEVRAGTGGEEAALFA 128
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+ +MY+RY++ +GWKFE++ +++ L G KEASA+ISG GV+ KLKFESG+HRVQR+P
Sbjct: 129 ADLLRMYQRYAEIQGWKFELMHESDTGLGGIKEASASISGKGVFAKLKFESGVHRVQRIP 188
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA+LP+ +EVD+ + +DLRID +RS G GGQ NTT+SAVR+TH+
Sbjct: 189 ATEAGGRIHTSAATVAVLPEVEEVDIHIEEKDLRIDVFRSSGPGGQSVNTTDSAVRITHL 248
Query: 311 PTGMTISIQDERSQHMVKD 329
P+G+ + QDE+SQH K+
Sbjct: 249 PSGVVVQQQDEKSQHKNKE 267
>gi|85375680|ref|YP_459742.1| peptide chain release factor 1 [Erythrobacter litoralis HTCC2594]
gi|122543160|sp|Q2N5U6.1|RF1_ERYLH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|84788763|gb|ABC64945.1| protein chain release factor A [Erythrobacter litoralis HTCC2594]
Length = 355
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/267 (46%), Positives = 185/267 (69%), Gaps = 10/267 (3%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I R+ I R A LE + E+ +A+++ +L + +E++ ++EI
Sbjct: 1 MTIPATRLDQIANRFAELEARMASGTLEGEEFVQASRDYAELEPVAKVAAEVKAMREEIG 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
GL+ ++ D +M MA EEL A+ E++R ++ ++LPKD AD + +LE+R
Sbjct: 61 GLEEMLA----DPEMKAMAQEELAAIREALPEKERQLAI---AMLPKDSADNKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+++MYER++ ++GWK E V + S++ G+KE A +SG GV+ KLK
Sbjct: 114 AGTGGDEAALFAGDLYRMYERFAGEQGWKVEPVSMNASEVGGFKEIVANVSGTGVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ ++DL+ID YR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDDKDLKIDIYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+PTG+ + QDERSQH
Sbjct: 234 NTTDSAVRITHLPTGIVVQQQDERSQH 260
>gi|395782594|ref|ZP_10462980.1| peptide chain release factor 1 [Bartonella rattimassiliensis 15908]
gi|395417331|gb|EJF83670.1| peptide chain release factor 1 [Bartonella rattimassiliensis 15908]
Length = 358
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 183/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L KE
Sbjct: 1 MVSLPQDRMKQLEKRFEIIESQMTTNPNAEI--YVKLASEYAELQPIIASIRALNVLYKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ISELETIINDKQTDIEMRNLAQEELPSLYKKVEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHNWKVEVISISEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSASTVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|15890803|ref|NP_356475.1| peptide chain release factor 1 [Agrobacterium fabrum str. C58]
gi|22096038|sp|Q8U8B8.1|RF1_AGRT5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15159088|gb|AAK89260.1| peptide chain release factor 1 [Agrobacterium fabrum str. C58]
Length = 360
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/271 (47%), Positives = 184/271 (67%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD ISE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
L++L+ + + DKDM D+A EL + L+ + LLPKD ADE+ I
Sbjct: 61 D-------LEALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|359409095|ref|ZP_09201563.1| peptide chain release factor 1 [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356675848|gb|EHI48201.1| peptide chain release factor 1 [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 360
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 179/261 (68%), Gaps = 9/261 (3%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
RVLA RR L SP + ++ ++EL ++R + +R Q+ + + LI
Sbjct: 9 RVLA--RRQEIEGRLAESGSLSPDQLTQLSRELAEIRPVAEQVEIVRQLQQNLTEARQLI 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E + D ++++MA TEEL + E + LLL LPKD D R+ ILEVRAGTGG+
Sbjct: 67 EEET-DPELVEMAQAETEELAAQLPEAEHQLKLLL---LPKDTDDARNAILEVRAGTGGD 122
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+F+V+ V+E+ + GYKEA+A ISG V+ +LKFESG+H
Sbjct: 123 EAALFASDLFGMYQRFAAKYGWRFDVMEVSETGIGGYKEATANISGQDVFARLKFESGVH 182
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A +VD+ + DLR+D +RS G GGQ NTT+SA
Sbjct: 183 RVQRVPETETGGRIHTSAATVAVLPEAQDVDIEINESDLRVDVFRSSGPGGQSVNTTDSA 242
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+TH+PTG+ +S QDE+SQH
Sbjct: 243 VRITHLPTGIIVSQQDEKSQH 263
>gi|403530102|ref|YP_006664631.1| peptide chain release factor 1 [Bartonella quintana RM-11]
gi|403232174|gb|AFR25917.1| peptide chain release factor 1 [Bartonella quintana RM-11]
Length = 359
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/266 (47%), Positives = 180/266 (67%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P+A Y K E L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDA--GTYVKLASEYADLQPIVTSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD DE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDVEMRNLAQEELPPLFQKMEKLEKELQILLLPKDITDEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF D+F+MYERY+ WK EV+ + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFVGDLFRMYERYANAYNWKVEVISLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|222529063|ref|YP_002572945.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM
6725]
gi|312622681|ref|YP_004024294.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis
2002]
gi|254790859|sp|B9MR68.1|RF1_ANATD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|222455910|gb|ACM60172.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM
6725]
gi|312203148|gb|ADQ46475.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis
2002]
Length = 355
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 183/269 (68%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE ++ PE + P E+ K KE L+ ++ + R ++ +D
Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILDT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|326386588|ref|ZP_08208210.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208903|gb|EGD59698.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
Length = 356
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 177/267 (66%), Gaps = 3/267 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I + R+ I R A LE + + A+++ +L H ++R + E+
Sbjct: 1 MTIADSRLDQIAARFAELEARLASGTLDAEAFIAASRDYAELEPVAHTARDVRLLRDELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L +L D DM +A EE+ E + L ++LP+D+AD +LE+RAGT
Sbjct: 61 SLAAL---DEPDADMRALAEEEMARIRAELPEAERRLALAMLPRDNADSHPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MYERY+ ++GWK EV+ SD+ G+KE A ++G GV+ KLK+ES
Sbjct: 118 GGDEAALFAADLFRMYERYAAEQGWKVEVISANASDIGGFKEVIAHVAGQGVFAKLKYES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV + ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVSIDDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+TH+PTG+ ++ QDERSQH K
Sbjct: 238 DSAVRITHLPTGIVVTQQDERSQHKNK 264
>gi|406707942|ref|YP_006758294.1| peptide chain release factor 1 (bRF-1) [alpha proteobacterium
HIMB59]
gi|406653718|gb|AFS49117.1| bacterial peptide chain release factor 1 (bRF-1) [alpha
proteobacterium HIMB59]
Length = 359
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/247 (49%), Positives = 173/247 (70%), Gaps = 1/247 (0%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
L+N + + NK+L KL + L +++ + EI+G K I E D+++ +A
Sbjct: 21 LMNSENLDNKQIIQINKDLSKLEPIISLSDDIKKLENEIEGYKE-ILENENDEELRSLAK 79
Query: 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYS 201
+EL + + ++ LL +LLPKD+AD+++ ILE+RAGTGG+EA+LFA D+F+MYERYS
Sbjct: 80 QELPIYEKDLEQKNRELLIALLPKDEADDKNVILEIRAGTGGDEAALFAGDLFRMYERYS 139
Query: 202 QKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261
K W F+ + E+ L+G KEA I G GV+ LK ESG+HRVQR+P TE GR+HTS
Sbjct: 140 AMKNWNFQPMEKNETGLKGVKEAIIEIKGDGVFKFLKNESGVHRVQRIPETESGGRIHTS 199
Query: 262 AVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE 321
A +VA+LP+A+EVDV ++ DLRID YRSGG+GGQ NTT+SAVR+TH+PTG+ ++ QDE
Sbjct: 200 AATVAVLPEAEEVDVDIKESDLRIDVYRSGGAGGQSVNTTDSAVRITHLPTGIVVTQQDE 259
Query: 322 RSQHMVK 328
RSQH K
Sbjct: 260 RSQHKNK 266
>gi|54288338|gb|AAV31626.1| predicted protein chain release factor A [uncultured alpha
proteobacterium EBAC2C11]
Length = 335
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 164/235 (69%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+E ++ +EL +LR I +R + E+ ++ E ED DML+M E L
Sbjct: 30 SELAQLARELSELRPICDQIELVRRIEAELADALLMVEEAGEDADMLEMVQAEAGLLKTR 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
S L LLPKD D R+ ILEVRAGTGG+EA+LFA ++F MY+R++ K GW FEV
Sbjct: 90 LPEAHSALQIMLLPKDKDDARNAILEVRAGTGGDEAALFASNLFSMYQRFAAKHGWNFEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ V+E+ + GYKEA+A ISG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 MEVSETGIGGYKEATATISGNDVFARLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A++VD+R+ DLR+D +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 210 AEDVDIRIDESDLRVDVFRASGPGGQSVNTTDSAVRITHLPTGIVVSQQDEKSQH 264
>gi|417861352|ref|ZP_12506407.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
gi|338821756|gb|EGP55725.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
Length = 360
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/275 (48%), Positives = 187/275 (68%), Gaps = 22/275 (8%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD +SE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAVSEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADE 170
L++L+ + + DKDM D+A EL I E EK +Q LLL PKD ADE
Sbjct: 61 D-------LEALLADKTTDKDMRDLAEMELPEVESRISELEKDMQVLLL----PKDAADE 109
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
+ ILE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG
Sbjct: 110 KSAILEIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISG 169
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
GV+ KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++D+ +R ED+RIDT R+
Sbjct: 170 RGVFSKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDIEIRPEDIRIDTMRA 229
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 230 SGAGGQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|92116091|ref|YP_575820.1| peptide chain release factor 1 [Nitrobacter hamburgensis X14]
gi|119361567|sp|Q1QQY7.1|RF1_NITHX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91798985|gb|ABE61360.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
hamburgensis X14]
Length = 361
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 169/252 (67%), Gaps = 3/252 (1%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LEN L++Q A Y + +EL +L + + R + EI G+ ++I + + D
Sbjct: 15 RHAALENELLSQISAE--RYVQMTRELSELNPVVEAVKNWRAVKTEIAGIDAMIADPATD 72
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+M MA E L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+
Sbjct: 73 AEMRAMAEAERPALGARGDELAQKIRVALLPKDAMDERNVMLEIRAGTGGDEASLFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK E + +E + GYKE A + G G Y KLKFESG+HRVQRVP TE
Sbjct: 133 FRMYERFAGLQGWKVEAISASEGTMGGYKEIVAEVRGRGAYAKLKFESGVHRVQRVPDTE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
GRVHTSA +VA+LP+A+EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 193 TQGRVHTSAATVAVLPEAEEVDVDIKTDDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 252
Query: 314 MTISIQDERSQH 325
+ + +QD RSQH
Sbjct: 253 IVVMMQDSRSQH 264
>gi|297180646|gb|ADI16856.1| protein chain release factor a [uncultured alpha proteobacterium
HF0010_13E22]
Length = 359
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 179/261 (68%), Gaps = 8/261 (3%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+VLA RR L + SP E + ++EL +LR I +R + + D L
Sbjct: 9 KVLA--RRDEVESWLADAASMSPDELASLSRELSELRPVCEQIDLVRRLEGDRDAAVMLA 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E ++D +M +MA +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 67 EEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 123
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 124 EAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 183
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ +++ DLRID +R+ G GGQ NTT+SA
Sbjct: 184 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQDSDLRIDVFRASGPGGQSVNTTDSA 243
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+THIPTG+ +S QDE+SQH
Sbjct: 244 VRITHIPTGIVVSQQDEKSQH 264
>gi|154246564|ref|YP_001417522.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2]
gi|226739122|sp|A7IIM2.1|RF1_XANP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|154160649|gb|ABS67865.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2]
Length = 360
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 164/237 (69%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY + +E L + + L+ +++++G L+ E + D +M +MA E+ D
Sbjct: 31 EYVRLGREFSDLSPVVEQVRALKDAERDLEGANELLAESAADPEMREMAEAEVERLQDRI 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L + + +LLPKD DER ILEVRAGTGG+EA+LFA D+++MY RY+ +KGW E++
Sbjct: 91 EALATAVRLALLPKDAMDERGIILEVRAGTGGDEAALFAGDLYRMYTRYAAEKGWSVEIL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE AA+ G G Y +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A
Sbjct: 151 SESEGTMGGYKEIVAALHGRGAYARLKFESGVHRVQRVPATETSGRIHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++VDV + DLRID YR+ G+GGQH N T SAVR+TH+PT +++QDERSQH K
Sbjct: 211 EDVDVDINEADLRIDVYRAQGAGGQHVNKTESAVRITHLPTNTVVAVQDERSQHRNK 267
>gi|357973917|ref|ZP_09137888.1| peptide chain release factor 1 [Sphingomonas sp. KC8]
Length = 361
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 183/271 (67%), Gaps = 6/271 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
++ I R+ IE R L+ ++ + + + + +KE +L E+R + E+
Sbjct: 1 MVSIPPARIAQIEARRDELQAMMARGDLAADRFVAVSKEYAELEPVAAAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL---QSLLLKSLLPKDDADERDCILEV 177
L +I + D ++ +MA +E A D RL + L LLP+D ADER +LE+
Sbjct: 61 ANLAFMIDDPQADAEIREMAQDE---AADIRARLPDAERALAIRLLPRDAADERAAMLEI 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA D+F+MY+RY++ +GWK E++ + ++L GYKE A+++G GV+ +L
Sbjct: 118 RAGTGGDEAALFAGDLFRMYQRYAEDRGWKVELISASAAELGGYKEVVASVTGAGVFARL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GR+HTSA +VA+LP+A++VDV++ ++DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPATESGGRIHTSAATVAVLPEAEDVDVQIDDKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
NTT+SAVR+TH+P+G+ + QDE+SQH K
Sbjct: 238 VNTTDSAVRITHLPSGLVVIQQDEKSQHKNK 268
>gi|297181089|gb|ADI17288.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_17D04]
Length = 359
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/261 (49%), Positives = 178/261 (68%), Gaps = 8/261 (3%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+VLA RR L + SP E + ++EL +LR I +R + + D L
Sbjct: 9 KVLA--RRDEVESRLADAASMSPDELASLSRELFELRPVCEQIDLVRRLEGDRDAAVMLA 66
Query: 128 YECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E ++D +M +MA +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 67 EEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 123
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 124 EAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 183
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ ++ DLRID +R+ G GGQ NTT+SA
Sbjct: 184 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTTDSA 243
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+THIPTG+ +S QDE+SQH
Sbjct: 244 VRITHIPTGIMVSQQDEKSQH 264
>gi|332716892|ref|YP_004444358.1| peptide chain release factor 1 [Agrobacterium sp. H13-3]
gi|325063577|gb|ADY67267.1| peptide chain release factor 1 [Agrobacterium sp. H13-3]
Length = 360
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 183/271 (67%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + + E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKVREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + DKDM D+A EL I E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLQALLADKTTDKDMRDLAEMELPEVEARIGELEKEMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFASAKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|297618446|ref|YP_003703605.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM
12680]
gi|297146283|gb|ADI03040.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM
12680]
Length = 355
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 184/270 (68%), Gaps = 9/270 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
M +++ +E + + L++QPE A +Y+KA+ EL +L D+ R +Q +
Sbjct: 1 MLEKLDKLEEKFEEITALLSQPEVIADQARFQKYAKAHAELSELVDTYREYK--RVRQDK 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
D L E ED D+ +M EE+ + D+E++L+ L LLPKD DE++ I+E+RA
Sbjct: 59 TDARAML--EEEEDDDLRNMLVEEIRVLSDKEEKLEQRLKLLLLPKDPNDEKNVIMEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++K+GWK +++ + SDL G+KE + G G Y KLKF
Sbjct: 117 GTGGEEAALFAADLFRMYSRYAEKQGWKVDIMDTSYSDLGGFKEIIFIVEGRGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P+TE GR+HTSA +VA+LP+A+EV+V + DLRID + S G GGQ N
Sbjct: 177 ESGVHRVQRIPVTESGGRIHTSAATVAVLPEAEEVEVDINPNDLRIDVFCSSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
TT SAVR+TH+PTG+ +S QDE+SQH KD
Sbjct: 237 TTQSAVRITHLPTGIVVSCQDEKSQHKNKD 266
>gi|75674575|ref|YP_316996.1| peptide chain release factor 1 [Nitrobacter winogradskyi Nb-255]
gi|119361570|sp|Q3SVP7.1|RF1_NITWN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|74419445|gb|ABA03644.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
winogradskyi Nb-255]
Length = 358
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 165/234 (70%), Gaps = 2/234 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDEE 151
Y + +EL +L + + R EI G+ ++I + + D +M MA E L +
Sbjct: 30 YVQMTRELAELNPIVDAVKNWRAVTAEIAGIDAMIADPATDAEMRAMAEAERPALEARND 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ +Q + + +LLPKD DER+ +LEVRAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 90 ELMQKIRV-ALLPKDAMDERNVMLEVRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVI 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE A + G G Y ++KFESG+HRVQRVP TE GRVHTSA +VA+LP+A
Sbjct: 149 SASEGTMGGYKEIVAQVQGRGAYARMKFESGVHRVQRVPDTEAQGRVHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+EVDV +R +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ +S+QD RSQH
Sbjct: 209 EEVDVDIRPDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVSMQDSRSQH 262
>gi|335036125|ref|ZP_08529455.1| peptide chain release factor 1 [Agrobacterium sp. ATCC 31749]
gi|333792689|gb|EGL64056.1| peptide chain release factor 1 [Agrobacterium sp. ATCC 31749]
Length = 360
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/271 (47%), Positives = 184/271 (67%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E ++ A+ +EYS+ ++K+RD ISE
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
L++L+ + + D+DM D+A EL + L+ + LLPKD ADE+ I
Sbjct: 61 D-------LEALLADKTTDRDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPQTEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|341614013|ref|ZP_08700882.1| peptide chain release factor 1 [Citromicrobium sp. JLT1363]
Length = 355
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/264 (45%), Positives = 181/264 (68%), Gaps = 4/264 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I +R+ I R A +E + + E+ +A+++ +L L EL+ ++E+
Sbjct: 1 MTIPPERLDQIANRFAEIEARMASGQLEGEEFVQASRDYAELEPVAKLALELKAAREEVA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL+ ++ D +M MA EEL L+ L ++LP+D AD + +LE+RAGT
Sbjct: 61 GLEDML----SDPEMRAMAEEELEALNQRIPELEQQLAVAMLPRDSADAKPAMLEIRAGT 116
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E V ++ S++ G+KE A ++G GV+ KLKFES
Sbjct: 117 GGDEAALFAGDLYRMYERFAGEQGWKVEPVSMSASEVGGFKEIVANVTGTGVFAKLKFES 176
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH NTT
Sbjct: 177 GVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDAGDLKIDTYRASGAGGQHVNTT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SA+R+TH+PTG+ ++ QD RSQH
Sbjct: 237 DSAIRITHLPTGLVVTCQDGRSQH 260
>gi|337266182|ref|YP_004610237.1| peptide chain release factor 1 [Mesorhizobium opportunistum
WSM2075]
gi|336026492|gb|AEH86143.1| peptide chain release factor 1 [Mesorhizobium opportunistum
WSM2075]
Length = 359
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 174/249 (69%), Gaps = 3/249 (1%)
Query: 79 LENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
E L Q A PA Y K E +L++ + + LR+ + E L++++ + D +M
Sbjct: 16 FEMLEAQMSAGPAPDAYVKMASEYAELQEMVAKVRALRSAEHEQADLEAMLADKGTDAEM 75
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A +L + + LQ + LLP+D AD+++ ILE+RAGTGG+EA+LFA D+F+M
Sbjct: 76 RALAEADLPGVEERIEALQKDIQLLLLPRDAADDKNAILEIRAGTGGDEAALFAGDLFRM 135
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
YERY+ + GW+FE V ++ D G+KE A ISG GV+ LKFESG+HRVQRVP TE SG
Sbjct: 136 YERYAAEHGWRFETVSASDGDAGGFKEIIATISGRGVFAHLKFESGVHRVQRVPATEASG 195
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NTT+SAVR+TH+PTG+ +
Sbjct: 196 RIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTTDSAVRITHLPTGIMV 255
Query: 317 SIQDERSQH 325
+Q E+SQH
Sbjct: 256 -VQAEKSQH 263
>gi|85709577|ref|ZP_01040642.1| protein chain release factor A [Erythrobacter sp. NAP1]
gi|85688287|gb|EAQ28291.1| protein chain release factor A [Erythrobacter sp. NAP1]
Length = 355
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 187/267 (70%), Gaps = 10/267 (3%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
++I +R+ I R A LE + E+ A+++ +L + E++ ++EI+
Sbjct: 1 MQIPPERLDQIANRFAELEARMASGTLEGEEFVAASRDYAELEPVAKIAGEVKAMREEIE 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
GL+ ++ D +M MA EEL A+ E++R SL + +LLP+D AD + +LE+R
Sbjct: 61 GLEEMLA----DPEMKAMAEEELSAIREALPEKER--SLAI-ALLPRDRADAKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MYE+Y+ ++GW+ E V ++ S++ G+KE A +SG GV+ KLK
Sbjct: 114 AGTGGDEAALFAGDLFRMYEKYAAEQGWRVEPVSMSASEVGGFKEIVANVSGQGVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE GR+HTSA +VA+LP+ DEVDV++ DL+IDTYR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVQIDPGDLKIDTYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SA+R+TH PTG+ ++ QD RSQH
Sbjct: 234 NTTDSAIRITHEPTGLVVTCQDGRSQH 260
>gi|395789248|ref|ZP_10468771.1| peptide chain release factor 1 [Bartonella taylorii 8TBB]
gi|395430295|gb|EJF96339.1| peptide chain release factor 1 [Bartonella taylorii 8TBB]
Length = 359
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIVTFIRTLNALHTE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETMISDKLTDIEMRNLAQEELPLLYQKTEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|420242577|ref|ZP_14746605.1| peptide chain release factor 1 [Rhizobium sp. CF080]
gi|398066813|gb|EJL58364.1| peptide chain release factor 1 [Rhizobium sp. CF080]
Length = 360
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 127/268 (47%), Positives = 185/268 (69%), Gaps = 8/268 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ K+ +++ +ERR +E +++ A+ Y K E +L+ + I E E+
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSEGPAADV-YVKLASEYSELQPVVRKIREYEKSIAEV 59
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEV 177
L++++ + D++M ++A EL A E+RL+ L + LLPKD ADER ILE+
Sbjct: 60 ADLRAMLTDKGTDREMRELAEMELPEA---EERLEGLEKDMQLLLLPKDAADERSAILEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG EA+LFA D+F+MYERY+ KGWK EV+ +E + GYKE A ++G GV+ KL
Sbjct: 117 RAGTGGNEAALFAGDLFRMYERYAATKGWKVEVLSASEGEAGGYKEIIATVTGRGVFSKL 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTSA +VA++P+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 177 KFESGVHRVQRVPDTEASGRIHTSAATVAVMPEAEEIDIEIRPEDIRIDTMRSSGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 237 VNTTDSAVRITHMPSGIVVT-SSEKSQH 263
>gi|298292694|ref|YP_003694633.1| peptide chain release factor 1 [Starkeya novella DSM 506]
gi|296929205|gb|ADH90014.1| peptide chain release factor 1 [Starkeya novella DSM 506]
Length = 365
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 173/255 (67%), Gaps = 3/255 (1%)
Query: 75 RSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A +E+ L P+A Y + ++E +L + LR+ ++++ ++L E + D
Sbjct: 15 RHAEIEHALSANPDAET--YVRLSREFAELSPLTDSVKALRSAERQLTDARTLAAEAAGD 72
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
K+M +A EE+ ++ + L + +LLPKD DER ILEVRAGTGG+EA+LFA D+
Sbjct: 73 KEMAALAEEEVASLEEQVETLTHAVRLALLPKDAMDERGVILEVRAGTGGDEAALFAGDL 132
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ GW EV+ +TE G+KE AA+ G G Y KLKFESG+HRVQRVP TE
Sbjct: 133 FRMYERFAGLNGWSVEVLSLTEGTAGGFKEIVAALHGSGAYAKLKFESGVHRVQRVPETE 192
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+ ++VD+ + DLRID +R+ G+GGQH N T SAVR+TH+PTG
Sbjct: 193 GSGRIHTSAATVAVLPEVEDVDIAINESDLRIDVFRASGAGGQHVNKTESAVRITHLPTG 252
Query: 314 MTISIQDERSQHMVK 328
+++QDERSQH K
Sbjct: 253 TVVAVQDERSQHKNK 267
>gi|49473852|ref|YP_031894.1| peptide chain release factor 1 [Bartonella quintana str. Toulouse]
gi|61214617|sp|Q6G0R0.1|RF1_BARQU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49239355|emb|CAF25688.1| Peptide chain release factor 1 [Bartonella quintana str. Toulouse]
Length = 359
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 180/266 (67%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P++ Y K E L+ + I L E
Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDS--GTYVKLASEYADLQPIVTSIRTLNALSIE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + ++L+ L LLPKD DE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDVEMRNLAQEELPPLFQKMEKLEKELQILLLPKDITDEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF D+F+MYERY+ WK EV+ + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFVGDLFRMYERYANAYNWKVEVISLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|408380658|ref|ZP_11178240.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
gi|407745434|gb|EKF56968.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
Length = 359
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 187/270 (69%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYQAAID 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCIL 175
E DGL++++ + + D++M ++A EL + E R+++L + LLPKD ADE+ IL
Sbjct: 58 EADGLRAMLSDKATDREMRELAEMELP---ELESRIEALGDEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++D+ ++ ED+RIDT R+ G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDIEIKPEDIRIDTMRASGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|374572180|ref|ZP_09645276.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
gi|374420501|gb|EHR00034.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
Length = 361
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 166/236 (70%), Gaps = 6/236 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELTPLIEAVKTYRSAVKELADTEALIADTATDAEMRAMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGSVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ +EVDV +RN+DLRI+T R+GG+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 209 EVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|424916637|ref|ZP_18340001.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852813|gb|EJB05334.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 359
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 189/270 (70%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++LI + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLIEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER+S +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|209965909|ref|YP_002298824.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
gi|209959375|gb|ACJ00012.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
Length = 360
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 172/236 (72%), Gaps = 2/236 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++++E +L I+ELR + ++ L+++ +D +M +A +EL A
Sbjct: 36 FVRSSQEYAELEPVATAIAELRRARADMADLQAMAE--GDDAEMATLARDELVEADRRIP 93
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ ++ +LLPKD+ADE++ ILEVRAGTGG+EA+LFA ++F+MY RY+ +GW+FE +
Sbjct: 94 ELERRIMLALLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGIQGWRFETIE 153
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E+ L GYKEASA+I+G V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 154 VNETGLGGYKEASASITGRNVFRRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAE 213
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
EVD+ + +DLRID +RS GSGGQ NTT+SAVR+TH+PT + + QDE+SQH K
Sbjct: 214 EVDIHIEEKDLRIDVFRSQGSGGQSVNTTDSAVRITHLPTNIVVQCQDEKSQHKNK 269
>gi|357029044|ref|ZP_09091057.1| peptide chain release factor 1 [Mesorhizobium amorphae CCNWGS0123]
gi|355536567|gb|EHH05837.1| peptide chain release factor 1 [Mesorhizobium amorphae CCNWGS0123]
Length = 359
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 181/265 (68%), Gaps = 2/265 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I + R+ + +R LE ++ A+ A Y + E +++ + I LR + E
Sbjct: 1 MINLPRDRMDQVVKRFDMLEAQMSAGPAADA-YVRMASEYADIQEMVARIRALRAAEHEQ 59
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L++++ + D +M +A +L + + LQ + LLPKD ADE++ ILE+RAG
Sbjct: 60 ADLEAMLADKGTDAEMRALAEADLPEVKERIEALQKDIQILLLPKDAADEKNAILEIRAG 119
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MYERY+ +GW+FEV ++ ++ GYKE A +SG GV+ LKFE
Sbjct: 120 TGGDEAALFAGDLFRMYERYAASRGWRFEVASASDGEVGGYKEIIATVSGKGVFAHLKFE 179
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ +R ED+RIDT R+ GSGGQH NT
Sbjct: 180 SGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNT 239
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SAVR+TH+PTG+ + +Q E+SQH
Sbjct: 240 TDSAVRITHLPTGIMV-VQAEKSQH 263
>gi|430005302|emb|CCF21103.1| peptide chain release factor 1 [Rhizobium sp.]
Length = 360
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 125/271 (46%), Positives = 186/271 (68%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEAS------PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E +++ A+ +EYS+ +RK+RD +E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSEGPAADVYVRLASEYSELQPVVRKIRDYEKATAE-- 58
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
+ L++L+ + + D++M ++A EL A + + L+ + LLPKD ADE+ I
Sbjct: 59 -----VADLRTLLADKATDREMRELAEMELPEAEERVEALEKDMQVLLLPKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYERY+ KGWK EV+ +E + G++E A +SG GV+
Sbjct: 114 LEIRAGTGGNEAALFAGDLFRMYERYAAGKGWKVEVLSASEGEAGGFREIIATVSGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+G
Sbjct: 174 SKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLVVT-SSEKSQH 263
>gi|408786054|ref|ZP_11197793.1| peptide chain release factor 1 [Rhizobium lupini HPC(L)]
gi|424908657|ref|ZP_18332034.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392844688|gb|EJA97210.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|408487924|gb|EKJ96239.1| peptide chain release factor 1 [Rhizobium lupini HPC(L)]
Length = 359
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 184/271 (67%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYEKAIS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLA---IDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + DKDM ++A EL I+E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLEALLADKTTDKDMRELAEMELPEIESRIEELEKDMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFAASKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|393720641|ref|ZP_10340568.1| peptide chain release factor 1 [Sphingomonas echinoides ATCC 14820]
Length = 357
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 177/268 (66%), Gaps = 2/268 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I R+ IE R L L+ + + + +KE +L E+R + E+
Sbjct: 1 MTSISPDRIRQIEARRDELSALMATGDLPSDRFVQVSKEYAELEPVARAAGEVRRLRAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
D L + E D ++ MA EE+ + + L SLLP+D ADER +LE+RAG
Sbjct: 61 DVLAGM--EDDGDPEIKTMAREEIDTIRERLPVAERALALSLLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GW+ E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAESQGWRVELISTSSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIEDKDLRIDIYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVK 328
T+SAVR+ HIPTG+T+ QDE+SQH K
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQHKNK 266
>gi|418299950|ref|ZP_12911780.1| peptide chain release factor 1 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355534513|gb|EHH03821.1| peptide chain release factor 1 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 359
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 183/271 (67%), Gaps = 14/271 (5%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYEKAVS 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELC---LAIDE-EKRLQSLLLKSLLPKDDADERDCI 174
E L++L+ + + D+DM D+A EL I E EK +Q LLL PKD ADE+ I
Sbjct: 58 EAADLEALLADKTTDRDMRDLAEMELPEIETRIGELEKDMQVLLL----PKDAADEKSAI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E + GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSASEGEAGGYKEIIATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
KLKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+++DV +R ED+RIDT R+ G+G
Sbjct: 174 SKLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHLPTGLIVT-SSEKSQH 263
>gi|414175690|ref|ZP_11430094.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
gi|410889519|gb|EKS37322.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
Length = 361
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 161/233 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ EI G+ +LI + + + DM MA E
Sbjct: 32 YVRITRELSELTPVVDAVKAYRSAADEISGIDALIADSTTEPDMRAMAESERPQLEARRD 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK +++
Sbjct: 92 ELAQDIRIALLPKDAMDERNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVDLIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 EVDVAIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|23015680|ref|ZP_00055449.1| COG0216: Protein chain release factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 354
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYASVHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + DLR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMVK 328
HIPTG+ ++ Q E+SQH K
Sbjct: 244 HIPTGLAVACQQEKSQHKNK 263
>gi|304321558|ref|YP_003855201.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
gi|303300460|gb|ADM10059.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
Length = 360
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/232 (50%), Positives = 167/232 (71%), Gaps = 5/232 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + ++ L+++ R + +GL S D +M +MA EE+ + +R
Sbjct: 34 SKEHAELKPVAEAALLLTDARQGLLDAEGLTK-----STDPEMAEMAKEEIASLTGQIER 88
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ L LLPKD AD+ ILEVRAGTGG+EA+LFA D+F+MY+RY+ +GW+ E++
Sbjct: 89 LEADLQLMLLPKDKADQAPVILEVRAGTGGDEAALFAGDLFRMYQRYAATRGWRVEILSA 148
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
TES + GYKE A +SG V+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 149 TESGVGGYKEIQANVSGDNVFGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPEPED 208
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+D+ ++ DLRID +R+ G GGQ NTT+SAVR+THIPTG+ +S QDE+SQH
Sbjct: 209 IDIDIQESDLRIDVFRASGPGGQSVNTTDSAVRITHIPTGVVVSQQDEKSQH 260
>gi|110635328|ref|YP_675536.1| peptide chain release factor 1 [Chelativorans sp. BNC1]
gi|119361558|sp|Q11E04.1|RF1_MESSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110286312|gb|ABG64371.1| bacterial peptide chain release factor 1 (bRF-1) [Chelativorans sp.
BNC1]
Length = 359
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 179/241 (74%), Gaps = 9/241 (3%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELC 145
SP Y K E +L++ + I LR + E++ L +++ + S D+++ ++A EE+
Sbjct: 28 SPDAYVKLASEYSELQEVANSIRALRKAEAELEDLDTMLADKSIDREIRELAEIDREEVE 87
Query: 146 LAI-DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ D +++LQ LLL PKD+ADE++ ILE+RAGTGG+EA+LFA D+F+MYERY+ ++
Sbjct: 88 SRVEDMQQKLQVLLL----PKDEADEKNAILEIRAGTGGDEAALFAGDLFRMYERYASER 143
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GW+ EVV +E + GYKE A+++G GV+ +LKFESG+HRVQRVP TE GR+HTSA +
Sbjct: 144 GWRVEVVSASEGEAGGYKEIIASVTGRGVFSRLKFESGVHRVQRVPATEAQGRIHTSAAT 203
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+A+++DV ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ + + E+SQ
Sbjct: 204 VAVLPEAEDIDVDIKPEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIMV-VSAEKSQ 262
Query: 325 H 325
H
Sbjct: 263 H 263
>gi|306842976|ref|ZP_07475610.1| peptide chain release factor 1 [Brucella sp. BO2]
gi|306286904|gb|EFM58429.1| peptide chain release factor 1 [Brucella sp. BO2]
Length = 315
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 163/219 (74%), Gaps = 7/219 (3%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKD 166
I EL +KE L ++ + S D +M +A EEL + EKR+ L + LLPKD
Sbjct: 5 IRELSDARKEASDLAAMRDDASTDAEMRALAVEELP---EVEKRIAVLEQDVQILLLPKD 61
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
AD+++ ILE+RAGTGG EA+LFA D+F+MYERY+ +KGW+ E+V +E D GYKE A
Sbjct: 62 VADDKNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIA 121
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
+SG GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +RNED+RID
Sbjct: 122 TVSGKGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRID 181
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
T R+ G+GGQH NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 182 TMRASGAGGQHVNTTDSAVRITHIPTGIMV-VQAEKSQH 219
>gi|424845384|ref|ZP_18269995.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
gi|363986822|gb|EHM13652.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
Length = 358
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 178/264 (67%), Gaps = 11/264 (4%)
Query: 70 LAIERRSACLENLVNQPEA---SPA------EYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I++R A +E + EA PA E K+ L+ + L E R + +
Sbjct: 1 MQIQKRLAEIEQAYREIEAKMGDPAVASNVKEMGVLGKKHADLQPVVELWQEYRQVEAGL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
KSL E SED +M ++A EE A+ + +++ L + LLPKD DE+D I+E+RAG
Sbjct: 61 AEAKSL--EDSEDAEMAELAKEEAASAVKRLEEIEAELHRQLLPKDPNDEKDVIVEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EASLFA D+++MY R+ +++GW+ E+V E+++ GYKE + G G Y KLKFE
Sbjct: 119 TGGDEASLFAADLYRMYSRFVEREGWRSEIVEENETEVGGYKEIVFQVKGAGAYSKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTSA +VA++PQA++V++ +R EDL IDTYRS G+GGQH N
Sbjct: 179 SGVHRVQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNM 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQ 324
T+SAVR+TH PTG+ ++ QDERSQ
Sbjct: 239 TDSAVRITHKPTGLVVTCQDERSQ 262
>gi|319899228|ref|YP_004159321.1| peptide chain release factor 1 [Bartonella clarridgeiae 73]
gi|319403192|emb|CBI76751.1| peptide chain release factor 1 [Bartonella clarridgeiae 73]
Length = 357
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/269 (49%), Positives = 185/269 (68%), Gaps = 9/269 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L D +K +E+R IE + A EN P A Y K E +L+ + LI L +
Sbjct: 4 LPKDRMKQLEKRFETIESQMA--EN----PNAET--YVKLASEYAELQPIIVLIRALNSL 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
KEI L+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E
Sbjct: 56 CKEIAELETIISDTQTDTEMRNLAQEELSSLYQKVQQLEQELQILLLPKDIADEKSVIIE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA ++F+MYERY+ WK EV+ +++ ++ GYKE A ISG GV+ K
Sbjct: 116 IRAGTGGSEAALFAGNLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSK 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 236 HVNTTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|145348023|ref|XP_001418457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578686|gb|ABO96750.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 373
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/268 (48%), Positives = 185/268 (69%), Gaps = 5/268 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLR---DSMHLISELRTKQKEID 121
+E+R A RR L L+++ +ANKEL ++ + ++ +LR ++ ++
Sbjct: 17 LEERGEAALRRREELIALISRQGVDIDRVVEANKELSRIEPIAEQYEVVKKLRAEKASLE 76
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL-LPKDDADERDCILEVRAG 180
L + K++ ++A EEL A+D + Q L L+ L LP DDAD+R ILEVRAG
Sbjct: 77 ELVRDASSGGDSKELAELAREELR-AVDIDLPDQELALQLLFLPHDDADDRGAILEVRAG 135
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GG+EA+LFA ++F+MY +++K GW+F+ + V+E+D +G +EASA I G GV+G+LKFE
Sbjct: 136 AGGDEAALFAAELFRMYALHARKSGWRFDTLNVSETDGKGVREASAEILGKGVFGRLKFE 195
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GRVHTS S+A+LP A+EV++ ++ ED+RIDT R+ G+GGQH NT
Sbjct: 196 SGVHRVQRVPETETQGRVHTSTASIAVLPHAEEVEMDIKEEDVRIDTMRASGAGGQHVNT 255
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVK 328
TNSAVR+TH PTG+ + IQDERSQH K
Sbjct: 256 TNSAVRLTHAPTGIQVVIQDERSQHKNK 283
>gi|312793258|ref|YP_004026181.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180398|gb|ADQ40568.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 355
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 182/269 (67%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + P E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNQAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|424886546|ref|ZP_18310154.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393175897|gb|EJC75939.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 359
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 183/267 (68%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKANA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDTADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|83310717|ref|YP_420981.1| protein chain release factor A [Magnetospirillum magneticum AMB-1]
gi|119361556|sp|Q2W6V3.1|RF1_MAGMM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|82945558|dbj|BAE50422.1| Protein chain release factor A [Magnetospirillum magneticum AMB-1]
Length = 354
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 150/200 (75%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYAGLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + DLR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQHMVK 328
HIPTG+ ++ Q E+SQH K
Sbjct: 244 HIPTGLAVACQQEKSQHKNK 263
>gi|395764564|ref|ZP_10445190.1| peptide chain release factor 1 [Bartonella sp. DB5-6]
gi|395414391|gb|EJF80834.1| peptide chain release factor 1 [Bartonella sp. DB5-6]
Length = 359
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAET--YVKLASEYAELQPIVTSIRTLNALHTE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIISDKLTDTEMRNLAQEELPLLYQKMEQLEQELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV + E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYAASHNWKVEVVSLNEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|260655567|ref|ZP_05861055.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
gi|260630015|gb|EEX48209.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
Length = 361
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 177/262 (67%), Gaps = 11/262 (4%)
Query: 72 IERRSACLENLVNQPEA---SPA------EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
I++R A +E + EA PA E K+ L+ + L E R + +
Sbjct: 6 IQKRLAEIEQAYREIEAKMGDPAVASNVKEMGVLGKKHADLQPVVELWQEYRQVEAGLAE 65
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KSL E SED +M ++A EE A+ + +++ L + LLPKD DE+D I+E+RAGTG
Sbjct: 66 AKSL--EDSEDAEMAELAKEEAASAVKRLEEIEAELHRQLLPKDPNDEKDVIVEIRAGTG 123
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+++MY R+ +++GW+ E+V E+++ GYKE + G G Y KLKFESG
Sbjct: 124 GDEASLFAADLYRMYSRFVEREGWRSEIVEENETEVGGYKEIVFQVKGAGAYSKLKFESG 183
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA++PQA++V++ +R EDL IDTYRS G+GGQH N T+
Sbjct: 184 VHRVQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTD 243
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH PTG+ ++ QDERSQ
Sbjct: 244 SAVRITHKPTGLVVTCQDERSQ 265
>gi|209551100|ref|YP_002283017.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238054472|sp|B5ZRR4.1|RF1_RHILW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|209536856|gb|ACI56791.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 359
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 189/270 (70%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER+S +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|319404588|emb|CBI78194.1| peptide chain release factor 1 [Bartonella rochalimae ATCC
BAA-1498]
Length = 359
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 183/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIAPIRTLNSLHKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IAELETIISDTQTDTEMRNLAQEELSSLSQKIQELEQELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA ++F+MYERY+ WK E++ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|344995777|ref|YP_004798120.1| peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus
6A]
gi|343963996|gb|AEM73143.1| Peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus
6A]
Length = 355
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 182/269 (67%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + P E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNHAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|357385917|ref|YP_004900641.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
gi|351594554|gb|AEQ52891.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
Length = 358
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 178/256 (69%), Gaps = 6/256 (2%)
Query: 71 AIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
A+ERR +E + P+ P Y + +KE +L + + E R ++ G + L
Sbjct: 11 ALERRFDSIEAAMSGSPD--PDAYVRLSKEYSELSPMVAKVREYRAALSDLAGAEELA-- 66
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S D++M ++A EE+ ++ + L + LLPKD ADE+ ILEVRAGTGG+EA+LF
Sbjct: 67 KSGDREMAELAYEEMGELKEKIEALSQEIRILLLPKDAADEKSAILEVRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY+RY++ +GWK V+ +E D GYKE A +SG GV+ KLK+ESG+HRVQRV
Sbjct: 127 AGDLFRMYQRYAEAQGWKVTVMEASEGDAGGYKEIIANVSGAGVFAKLKYESGVHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTSA +VA+LP+ +++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+TH
Sbjct: 187 PDTEASGRIHTSAATVAVLPEVEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQH 325
IPTG+ ++ E+SQH
Sbjct: 247 IPTGIVVT-SAEKSQH 261
>gi|378827170|ref|YP_005189902.1| Peptide chain release factor 1 RF-1 [Sinorhizobium fredii HH103]
gi|365180222|emb|CCE97077.1| Peptide chain release factor 1 RF-1 [Sinorhizobium fredii HH103]
Length = 360
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 185/273 (67%), Gaps = 18/273 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR A +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFAEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
E+ ++ L+ + + DKDM D+A EE A+++E +Q LLL PKD ADE+
Sbjct: 58 ELADIEVLLADRATDKDMRDLAEMERPEVEERIEALEQE--IQILLL----PKDAADEKS 111
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG G
Sbjct: 112 AILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVSGRG 171
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G
Sbjct: 172 VFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSG 231
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 232 AGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|254796771|ref|YP_003081607.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
gi|254590013|gb|ACT69375.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
Length = 367
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/268 (45%), Positives = 187/268 (69%), Gaps = 5/268 (1%)
Query: 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASPA-EYSKANKELRKLRDSMHLISELRTKQ 117
++L ++E+ I R L + + PE P+ E+SK +KE +L+ + LI+ + +
Sbjct: 2 DNLCGVLEE----ILNRHTYLADRLRCPETIPSQEFSKLSKEYAELKPKVELITRYKKLK 57
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+E L+ L+ ED+++ ++ +L D +L+ + + LLPKD D + +LEV
Sbjct: 58 EEQAYLELLVKNPLEDQEIREIGKSDLQAIQDVVPKLEFEIRRMLLPKDKDDALNVMLEV 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LFA +F MY++Y+++ W+FE++ ++ +++ GYKEA+A+ISG V+ KL
Sbjct: 118 RAGTGGDEAALFAASLFHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSEVFAKL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE +GR+HTS +VA+LP+ ++VDV++ ++DLRID YRS G GGQ
Sbjct: 178 KFESGVHRVQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQS 237
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVRVTHIPTG+ + QDE+SQH
Sbjct: 238 VNTTDSAVRVTHIPTGIVVIQQDEKSQH 265
>gi|158426116|ref|YP_001527408.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571]
gi|158333005|dbj|BAF90490.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571]
Length = 357
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 173/265 (65%), Gaps = 13/265 (4%)
Query: 70 LAIERRSACLENLVNQ---------PEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
++IE +A L+ LV + A EY + +E L + + LR ++++
Sbjct: 1 MSIELPTAKLDQLVARHAEVEALLAAGAEGEEYVRLGREFSDLSPVVEQVRALRAAERDL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ L+ D +M D+A E+ E + L + +LLPKD DER ILEVRAG
Sbjct: 61 ADARELLA----DPEMRDLAQSEVTRLEAELETLAKEVRLALLPKDAMDERGVILEVRAG 116
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY RY+ +KGW E++ +E + GYKE AA+ G G Y +LKFE
Sbjct: 117 TGGDEAALFAGDLFRMYARYAAEKGWSVELLSESEGTVGGYKEVVAAVHGRGAYARLKFE 176
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTSA +VA+LP+A++VDV + DLRID YR+ G+GGQH N
Sbjct: 177 SGVHRVQRVPDTETSGRIHTSAATVAVLPEAEDVDVDINESDLRIDVYRAQGAGGQHVNK 236
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T SAVR+THIPTGM +++QDERSQH
Sbjct: 237 TESAVRITHIPTGMVVAVQDERSQH 261
>gi|395778749|ref|ZP_10459261.1| peptide chain release factor 1 [Bartonella elizabethae Re6043vi]
gi|423714937|ref|ZP_17689161.1| peptide chain release factor 1 [Bartonella elizabethae F9251]
gi|395417957|gb|EJF84294.1| peptide chain release factor 1 [Bartonella elizabethae Re6043vi]
gi|395430421|gb|EJF96463.1| peptide chain release factor 1 [Bartonella elizabethae F9251]
Length = 358
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 180/266 (67%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRIKQLEKRFEIIESQMTANPNAET--YVKLASEYAELQPVIASIRALNALYAE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 IRELETIINDKQTDIEMRHLAQEELPSLYKKVEHLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDINIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|451980716|ref|ZP_21929102.1| Peptide chain release factor RF-1 [Nitrospina gracilis 3/211]
gi|451762052|emb|CCQ90341.1| Peptide chain release factor RF-1 [Nitrospina gracilis 3/211]
Length = 357
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/260 (47%), Positives = 179/260 (68%), Gaps = 3/260 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE+R L NL++ P+ +PAEY K +E +L D + E + +++ + ++ E
Sbjct: 8 IEKRYEKLNNLMSDPKVYGNPAEYQKCAREHSELSDIVSEYREWKRADRQLQENRKVLDE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S D+++++MA EE+ I ++ ++ L LLPKD DE+ I+E+RAGTGG+EA LF
Sbjct: 68 ES-DRELIEMAREEVESLILRKEEHEAQLKLMLLPKDPRDEKSVIMEIRAGTGGDEAGLF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++ + WK EV+ + + + GYKE I G G Y +LKFE+G HRVQRV
Sbjct: 127 AADLFRMYSRYAEDRKWKIEVLASSVTGVGGYKEIICNIQGKGAYSRLKFEAGTHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VAILP+A+EVDV++ DL+ID YRS G GGQ NTT+SAVR+TH
Sbjct: 187 PATETQGRIHTSAVTVAILPEAEEVDVQINPGDLKIDVYRSSGPGGQSVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQHMVKD 329
+P+G+ ++ QDE+SQH K+
Sbjct: 247 VPSGIVVTCQDEKSQHKNKE 266
>gi|407775618|ref|ZP_11122911.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
gi|407281295|gb|EKF06858.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
Length = 360
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 178/259 (68%)
Query: 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
+ RR L +L++ E +SK ++E +L + I + +++ + ++ +
Sbjct: 10 GVTRRFDELNSLLSSGELDGDGFSKLSREHAELAPVVEAIEAYKKLLNDLEEAEEILADP 69
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D+DM +MA E D+ + + L+PKD AD ++ ILE+RAGTGGEEA+LFA
Sbjct: 70 QSDRDMREMAEAEKYDIQDKLPEAERQMKLMLIPKDTADTKNAILEIRAGTGGEEAALFA 129
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+++MY+RY++ +GWKFE + +E+DL G+KE +SG V+ +LKFESG+HRVQRVP
Sbjct: 130 ADLYRMYQRYAEGRGWKFEQMDASENDLGGFKEVIVNVSGTDVFARLKFESGVHRVQRVP 189
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
+TE GR+HTSA +VA+LP+A+EVD+++ +DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 VTEGGGRIHTSAATVAVLPEAEEVDIKIDPKDLRIDTYRSQGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVKD 329
PTG+ + Q+ +SQH K+
Sbjct: 250 PTGVVAASQEAKSQHKNKE 268
>gi|163867491|ref|YP_001608690.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476]
gi|189039959|sp|A9IMM3.1|RF1_BART1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161017137|emb|CAK00695.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476]
Length = 358
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 181/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L E
Sbjct: 1 MVSLPQDRIKQLEKRFEIIESQMTTNPNAET--YVKLASEYAELQPVIASIRALNALYGE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M +A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKQTDIEMRHLAQEELPSLHKKVEQLEKELQILLLPKDVADEKSAIVEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LF+ D+F+MYERY+ WK EV+ ++E ++ GYKE A ISG GV+ KLK+
Sbjct: 119 GTGGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKY 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|386399803|ref|ZP_10084581.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
gi|385740429|gb|EIG60625.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
Length = 361
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 166/236 (70%), Gaps = 6/236 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELTPLIEAVKTYRSAVKELADTEALIADPATDAEMRAMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
+ L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 D---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGSVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ +EVDV +RN+DLRI+T R+GG+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 209 EVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|189182919|ref|YP_001936704.1| peptide chain release factor 1 [Orientia tsutsugamushi str. Ikeda]
gi|238692229|sp|B3CQD1.1|RF1_ORITI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189179690|dbj|BAG39470.1| peptide chain release factor RF-1 [Orientia tsutsugamushi str.
Ikeda]
Length = 359
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 178/250 (71%), Gaps = 1/250 (0%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
LE +N + E + +KE L+ + ++ + I L+ +I + +D ++
Sbjct: 17 LEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI-DTEQDLELKS 75
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EL ++ +L+ + SLLPK+ D ++ I+EVRAGTGG+EA+LFA +F+MY
Sbjct: 76 IAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAALFAASLFQMYN 135
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++K WKFE++ ++++++ GYKEASA ISG GV+ LKFESG+HRVQR+P TE +GR+
Sbjct: 136 RYAERKKWKFELLSISDTEIGGYKEASALISGNGVFANLKFESGVHRVQRIPKTESNGRI 195
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +V +LP+A+EVDV++ +DL+IDTYR+ G+GGQH NTT+SAVR+THIPTG+ +S
Sbjct: 196 HTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVSQ 255
Query: 319 QDERSQHMVK 328
QDE+SQH K
Sbjct: 256 QDEKSQHKNK 265
>gi|116254019|ref|YP_769857.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
3841]
gi|119361588|sp|Q1MBB2.1|RF1_RHIL3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|115258667|emb|CAK09771.1| putative peptide chain release factor 1 [Rhizobium leguminosarum
bv. viciae 3841]
Length = 359
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 189/270 (70%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AVTELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|402490003|ref|ZP_10836796.1| peptide chain release factor 1 [Rhizobium sp. CCGE 510]
gi|401811342|gb|EJT03711.1| peptide chain release factor 1 [Rhizobium sp. CCGE 510]
Length = 359
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 188/270 (69%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK E + +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEALSASEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEIDIEIRQEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|374812548|ref|ZP_09716285.1| peptide chain release factor 1 [Treponema primitia ZAS-1]
Length = 361
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/274 (47%), Positives = 184/274 (67%), Gaps = 27/274 (9%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT---KQKEID 121
M +R+ ++ RR L L+ PE K+ +K RD+M S+L T Q+EI+
Sbjct: 1 MNERLESLLRRYDELSGLIQDPELV--------KDQKKYRDTMREYSQLDTIAGTQREIE 52
Query: 122 GL-------KSLIYECSEDKDMLDMATEEL----CLAIDEEKRLQSLLLKSLLPKDDADE 170
+ K+LI + +D DM +MA EE D E RL+ LL+ PKD DE
Sbjct: 53 EISAQLADTKTLIQD-EKDPDMREMAKEESRELETHLKDAEDRLKFLLI----PKDPLDE 107
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ I+E+RAGTGG+EA+LFA D+++MY R+++ KGWKFE++ E++L G+KE +ISG
Sbjct: 108 KNIIMEIRAGTGGDEAALFASDLYRMYSRFAETKGWKFEIMSSNETELGGFKEIVFSISG 167
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
VY L++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ +R EDLRID R+
Sbjct: 168 NNVYENLRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIRTEDLRIDVMRA 227
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
GG GGQ NTT+SAVR+THIP+G+ + QDE+SQ
Sbjct: 228 GGPGGQCVNTTDSAVRITHIPSGVVVQCQDEKSQ 261
>gi|424897195|ref|ZP_18320769.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181422|gb|EJC81461.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 359
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 183/267 (68%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKANA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLDDKSVDREMRDLAELELPEVKEQIEALEHEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|146296536|ref|YP_001180307.1| peptide chain release factor 1 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|166223538|sp|A4XJN1.1|RF1_CALS8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145410112|gb|ABP67116.1| peptide chain release factor 1 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 355
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 181/267 (67%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE ++ PE + E+ K KE L+ + E + K I+
Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIINNNQEWQKLMKEHSNLQPIVEKFREYKRIIKTIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + + D+D + EEL A ++++ ++ L LLPKD DE++ I+E+RAG G
Sbjct: 61 AEELL-DTNLDEDFEKLVKEELNQAKEQKEIVERELKILLLPKDPNDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+ESG
Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL I+T+R+GG+GGQH N T
Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIETFRAGGAGGQHVNKTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+TH PTG+ +S QDERSQH +D
Sbjct: 240 SAVRITHKPTGIVVSCQDERSQHANRD 266
>gi|297180848|gb|ADI17053.1| protein chain release factor a [uncultured alpha proteobacterium
HF0010_30A23]
Length = 358
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/250 (48%), Positives = 176/250 (70%), Gaps = 14/250 (5%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL--IYECSEDKDMLDM 139
L + PE A+Y+K +E ++ ++ E+R QK + L+ + +D DM M
Sbjct: 22 LADHPEPGSADYTKLTREYAEMNP---IVEEMRAFQKSVQDLEDARALAASEDDADMRAM 78
Query: 140 ATEE---LCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
A +E L ID E+R++ LLL P+D+AD R+ ILE+R GTGG+EA LFA D+
Sbjct: 79 AEDEARELQAEIDATEQRMKVLLL----PRDEADSRNAILEIRPGTGGDEAGLFAGDLLA 134
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY RY++ +GWKFE++ ++E+D+ G KE SA I+G V+ LKFESG+HRVQRVP+TE
Sbjct: 135 MYRRYAELQGWKFEILEMSENDVGGLKEVSAKINGTNVFAALKFESGVHRVQRVPMTESG 194
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GR+HTSA +VA+LP+A++VD+ ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 195 GRIHTSAATVAVLPEAEDVDIEIKAEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGII 254
Query: 316 ISIQDERSQH 325
++ Q ++SQH
Sbjct: 255 VT-QSQKSQH 263
>gi|404251678|ref|ZP_10955646.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26621]
Length = 357
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 178/267 (66%), Gaps = 12/267 (4%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L L+ + + +KE +L E+R + E+ L
Sbjct: 4 ISPERIAQIEARRDELSALMATGDLPSDRFVAVSKEYAELEPVARAAGEVRRLRAELGVL 63
Query: 124 KSLIYECSEDKDMLDMATEEL-----CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ E +D ++ MA EE+ L + E R SL +LLP+D ADER +LE+R
Sbjct: 64 AGM--EADDDPEIKTMAREEIEAIRGTLPVAE--RALSL---ALLPRDAADERAAMLEIR 116
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MY+RY++ +GWK E++ + S+ G+KEA A++ G GV+ KLK
Sbjct: 117 AGTGGDEAALFAADLFRMYQRYAEGQGWKVELISASSSESGGFKEAIASVEGKGVFAKLK 176
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ
Sbjct: 177 FESGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSV 236
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+ HIPTG+T+ QDE+SQH
Sbjct: 237 NTTDSAVRIVHIPTGLTVIQQDEKSQH 263
>gi|395491365|ref|ZP_10422944.1| peptide chain release factor 1 [Sphingomonas sp. PAMC 26617]
Length = 357
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 178/265 (67%), Gaps = 8/265 (3%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I +R+ IE R L L+ + + +KE +L E+R + E+ L
Sbjct: 4 ISPERIAQIEARRDELSALMATGDLPSDRFVAVSKEYAELEPVARAAGEVRRLRAELGVL 63
Query: 124 KSLIYECSEDKDMLDMATEELCL---AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ E +D ++ MA EE+ + + +R SL +LLP+D ADER +LE+RAG
Sbjct: 64 AGM--EADDDPEIKTMAREEIEAIRGTLPDAERALSL---ALLPRDAADERAAMLEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY+RY++ +GWK E++ + S+ G+KEA A++ G GV+ KLKFE
Sbjct: 119 TGGDEAALFAADLFRMYQRYAEGQGWKVELISASSSESGGFKEAIASVEGKGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVDV++ ++DLRID YRS G GGQ NT
Sbjct: 179 SGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDVKIDDKDLRIDVYRSSGPGGQSVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SAVR+ HIPTG+T+ QDE+SQH
Sbjct: 239 TDSAVRIVHIPTGLTVIQQDEKSQH 263
>gi|424872524|ref|ZP_18296186.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393168225|gb|EJC68272.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 359
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 189/270 (70%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|418940341|ref|ZP_13493709.1| Peptide chain release factor 1 [Rhizobium sp. PDO1-076]
gi|375052961|gb|EHS49360.1| Peptide chain release factor 1 [Rhizobium sp. PDO1-076]
Length = 359
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 183/270 (67%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L + I E +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELEPVVKKIREYQAATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS---LLPKDDADERDCIL 175
E L+S++ + D++M D+A EL D + RL++L + LLPKD ADE+ IL
Sbjct: 58 EEADLRSMLSDKGTDREMRDLAEMELP---DVQARLETLGTEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ KGWK EV+ +E D G+KE A ++G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFASTKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFS 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAEDIDIEVRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPTGLVVT-SSEKSQH 263
>gi|365900753|ref|ZP_09438615.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3843]
gi|365418514|emb|CCE11157.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3843]
Length = 361
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 163/234 (69%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y + +EL +L + + R KE+ ++LI + + D +M MA E ++
Sbjct: 31 KYVQITRELAELNPVIDAVKAYRAAVKELADAETLIADSATDAEMRTMAEAEREELVERR 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 91 AELEQKIRLALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVI 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 SASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEV 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++VDV ++NEDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 211 EDVDVDIKNEDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
>gi|395780955|ref|ZP_10461399.1| peptide chain release factor 1 [Bartonella washoensis 085-0475]
gi|395416830|gb|EJF83192.1| peptide chain release factor 1 [Bartonella washoensis 085-0475]
Length = 359
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 183/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L +
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAENPNAET--YVKLASEYAELQPIVTSIRTLNALYVD 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I GL+++I + D +M ++A EEL + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITGLETIISDKLTDVEMRNLAQEELPSLWQKIEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|269926759|ref|YP_003323382.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790419|gb|ACZ42560.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
Length = 355
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 179/262 (68%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE+R L+ +++ PE + P+ + +E +L D + L E + + +
Sbjct: 1 MLERLDNIEKRFDELDRMMSDPEIFSDPSRLMEVARERSELEDIVSLYREYKKVKLTREE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + D D+ MA EE D EK L+ L +LLPKD DE+D I+E+RAGTG
Sbjct: 61 DRRLMEDP--DPDIRQMAEEEYEQLADREKDLEERLKIALLPKDPNDEKDVIVEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+++MY RY++++GWK EV+ +ESD G+KE + G G Y +LK+ESG
Sbjct: 119 GEEAALFAADLYRMYTRYAERQGWKTEVLSTSESDAGGFKEIIFEVKGRGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE GR+HTS +VA+LP+A+EV+V + EDLRID +RS G GGQ NTT+
Sbjct: 179 VHRVQRVPVTESQGRIHTSTATVAVLPEAEEVEVEIDPEDLRIDVFRSTGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 239 SAVRITHLPTGLVVTCQDEKSQ 260
>gi|119361587|sp|Q2K3T1.2|RF1_RHIEC RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 359
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 181/267 (67%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRAYEKAVA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E+ L++L+ + S D++M D+A EL + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 ELADLETLLEDKSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 238 NTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|398831037|ref|ZP_10589216.1| peptide chain release factor 1 [Phyllobacterium sp. YR531]
gi|398212605|gb|EJM99207.1| peptide chain release factor 1 [Phyllobacterium sp. YR531]
Length = 358
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 182/265 (68%), Gaps = 4/265 (1%)
Query: 62 IKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ I + R+ + +R + +E + + P++ Y K E +L + I + + + E
Sbjct: 1 MSIPQDRMDQLLKRFSMMETQMASNPDSET--YVKLASEYSELEPVVFKIRDFLSARSEA 58
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
L++++ + S D+DM ++A EL + + L+ + LLPKD ADER+ ILE+RAG
Sbjct: 59 ADLQAMLDDVSTDRDMRELAEAELPEIEERIEVLEQDIQVLLLPKDVADERNAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG EA+LF D+F+MYERY+ GW+ E++ ++ + GYKE A +SG GV+ KLKFE
Sbjct: 119 TGGSEAALFGGDLFRMYERYASANGWRVELISASDGEAGGYKEVIAMVSGRGVFAKLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R +D+RIDT R+ GSGGQH NT
Sbjct: 179 SGVHRVQRVPDTEASGRIHTSAATVAVLPEAEEIDIEIRPDDIRIDTMRASGSGGQHVNT 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SAVR+THIP+G+ + +Q E+SQH
Sbjct: 239 TDSAVRITHIPSGIVV-VQAEKSQH 262
>gi|294085498|ref|YP_003552258.1| protein chain release factor A [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665073|gb|ADE40174.1| Protein chain release factor A [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 358
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 180/262 (68%), Gaps = 10/262 (3%)
Query: 68 RVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+VLA R +EN++N + S E + +EL +LR I ++ E+ + +
Sbjct: 9 KVLA---RRTEVENILNDAASLSVDEMANFARELSELRPVCEQIELVQRLTSELSDAEVM 65
Query: 127 IYECSEDKDMLDMA---TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
+ E +D DML+MA +EL I +E++ LLPKD D R+ ILEVRAGTGG
Sbjct: 66 VGEAGDDPDMLEMARLEMQELQAQIPDEQQKLQ---LLLLPKDRDDARNAILEVRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F MY+R+S K GWKFEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+
Sbjct: 123 DEAALFASDLFGMYQRFSAKYGWKFEVMEVSETGIGGYKEATATITGSDVFARLKFESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A++VDV + DLRID +R+ G GGQ NTT+S
Sbjct: 183 HRVQRVPETETGGRIHTSAATVAVLPEAEDVDVEVVESDLRIDVFRASGPGGQSVNTTDS 242
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+TH+PTG+ +S QDE+SQH
Sbjct: 243 AVRITHMPTGIVVSQQDEKSQH 264
>gi|452963309|gb|EME68385.1| protein chain release factor A [Magnetospirillum sp. SO-1]
Length = 354
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 112/197 (56%), Positives = 149/197 (75%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D+A EE + L+ + LLPKD+ADE++ I+EVRAGTGGEEA+L
Sbjct: 64 EMMNDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGTGGEEAAL 123
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MYERY+ GW+FEV+ V ++ + G KEASA I+G V+ +LKFESG+HRVQR
Sbjct: 124 FAAELFRMYERYASLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFESGVHRVQR 183
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA +VAI+P+A+EVD++L + +LR D YRS GSGGQ NTT+SAVRVT
Sbjct: 184 VPATESQGRIHTSAATVAIMPEAEEVDIQLNDSELRFDVYRSQGSGGQSVNTTDSAVRVT 243
Query: 309 HIPTGMTISIQDERSQH 325
H+PTG+ ++ Q E+SQH
Sbjct: 244 HLPTGLAVACQQEKSQH 260
>gi|423711001|ref|ZP_17685321.1| peptide chain release factor 1 [Bartonella washoensis Sb944nv]
gi|395414915|gb|EJF81350.1| peptide chain release factor 1 [Bartonella washoensis Sb944nv]
Length = 359
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 183/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L +
Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAENPNAET--YVKLASEYAELQPIVSSIRTLNALYVD 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I L+++I + D +M ++A EEL L + ++L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITELETIINDKLTDVEMRNLAQEELPLLWQKIEQLEQELQILLLPKDVADEKSAIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EVV ++E ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVVSLSEGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|302872094|ref|YP_003840730.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574953|gb|ADL42744.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis
OB47]
Length = 355
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 181/269 (67%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + E+ K KE L+ ++ + R +K ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQP---IVEKFREYKKILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|88608013|ref|YP_506293.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
gi|119361566|sp|Q2GE03.1|RF1_NEOSM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88600182|gb|ABD45650.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
Length = 367
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 179/252 (71%), Gaps = 1/252 (0%)
Query: 75 RSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R L + + PEA + E+SK +KE +L+ + LI+ + ++E L+ L+ ED
Sbjct: 14 RHTYLADRLRCPEAIASQEFSKLSKEYAELKPKVELIARYKKLKEEQAYLELLVKNPLED 73
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
+++ ++ +L D +L+ + + LLPKD D + +LEVRAGTGG+EA+LFA +
Sbjct: 74 QEIREIGKSDLQAIQDVIPKLELEIKRMLLPKDKDDALNVMLEVRAGTGGDEAALFAASL 133
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F MY++Y+++ W+FE++ ++ +++ GYKEA+A+ISG V+ KLKFESG+HRVQRVP TE
Sbjct: 134 FHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQRVPETE 193
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
+GR+HTS +VA+LP+ ++VDV++ ++DLRID YRS G GGQ NTT+SAVR+THIPTG
Sbjct: 194 SAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTG 253
Query: 314 MTISIQDERSQH 325
+ + QDE+SQH
Sbjct: 254 IVVIQQDEKSQH 265
>gi|402848548|ref|ZP_10896805.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
gi|402501295|gb|EJW12950.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
Length = 359
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 176/258 (68%), Gaps = 1/258 (0%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
++ A+ R A L+ +++ + SP +++ ++EL +L + I +EID + ++
Sbjct: 6 KLAALVTRHAALQAELSE-KTSPEVFARLSRELSELTPVVEAIDRYAAVLREIDDVDEMM 64
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ + D ++ +A E + +RL+ L +L+PKD D R+ I+E+RAGTGG+EA+
Sbjct: 65 TDAATDAELRAVAASERSTLEETRERLEQELRLALIPKDAMDARNVIVEIRAGTGGDEAA 124
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MYERY+ +GWK E+V +E + GYKE A I G G + +LKFESG+HRVQ
Sbjct: 125 LFAGDLFRMYERYAALQGWKTEIVSASEGTMGGYKEIVAEIRGAGAFARLKFESGVHRVQ 184
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE SGR+HTSA +VA+LP+A+EVDV + +DL IDT RS G+GGQH N T SA+RV
Sbjct: 185 RVPETEASGRIHTSAATVAVLPEAEEVDVAIDEKDLEIDTMRSSGAGGQHVNKTESAIRV 244
Query: 308 THIPTGMTISIQDERSQH 325
H+P+G+ + +Q+ERSQH
Sbjct: 245 KHVPSGIVVFVQEERSQH 262
>gi|334139999|ref|YP_004533199.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
gi|333938023|emb|CCA91381.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
Length = 356
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 178/264 (67%), Gaps = 3/264 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + ++R+ I R A LE + + A+++ +L + +E+ + ++E+
Sbjct: 1 MSVSDERLAQIAHRFAELEARLASGTLEGEAFVAASRDYAELEPVARVSAEVVSMREELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L D +M +A EE+ E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLQKL---DDPDPEMRALADEEIARIKSELPEAERKLAIAMLPRDAADSRPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E++ SD+ G+KE A +SG GV+ KLKFES
Sbjct: 118 GGDEAALFAADLYRMYERFAAEQGWKVEMISANSSDIGGFKEVVANVSGTGVFAKLKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV++ ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SAVR+TH+P+G+ + QDERSQH
Sbjct: 238 DSAVRITHLPSGLVVICQDERSQH 261
>gi|427432053|ref|ZP_18921050.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
gi|425877425|gb|EKV26169.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
Length = 352
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 169/235 (71%), Gaps = 4/235 (1%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
++ +KE+ L + I+ELR + +++ +++ + D +M D+A EE +
Sbjct: 31 ARMSKEISDLTPVVEAIAELRKARSDLEEAEAM----ASDPEMRDLAQEEAADLRERVPE 86
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L+PKD+AD R+ ILEVRAGTGG+EA+LFA ++F+MYERY+ KGWK EV+ +
Sbjct: 87 LEHAVKLLLVPKDEADARNAILEVRAGTGGDEAALFAGELFRMYERYAALKGWKVEVMDL 146
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E+DL G KE A ISG V+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A +
Sbjct: 147 NETDLGGVKEVVAMISGRDVFARLKYESGVHRVQRVPETEGGGRIHTSAATVAVLPEAQD 206
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
VDV + ++DLRIDTYRS G+GGQH NTT SAVR+TH+PTG+ + Q+E+SQH K
Sbjct: 207 VDVHIEDKDLRIDTYRSQGAGGQHVNTTESAVRITHVPTGVVAACQEEKSQHKNK 261
>gi|359398832|ref|ZP_09191847.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
gi|357599775|gb|EHJ61479.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
Length = 356
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 178/264 (67%), Gaps = 3/264 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ + ++R+ I R A LE + + A+++ +L + +E+ + ++E+
Sbjct: 1 MSVSDERLAQIAHRFAELEARLASGTLEGEAFVAASRDYAELEPVARVSAEVVSMREELA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L D +M +A EE+ E + L ++LP+D AD R +LE+RAGT
Sbjct: 61 SLQKL---DDPDPEMRALADEEIARIKSELPEAERKLAIAMLPRDAADSRPAMLEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+++MYER++ ++GWK E++ SD+ G+KE A +SG GV+ KLKFES
Sbjct: 118 GGDEAALFAADLYRMYERFAAEQGWKVEMISANASDIGGFKEVVANVSGTGVFAKLKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV++ ++DL+ID YR+ G+GGQH NTT
Sbjct: 178 GVHRVQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SAVR+TH+P+G+ + QDERSQH
Sbjct: 238 DSAVRITHLPSGLVVICQDERSQH 261
>gi|86359340|ref|YP_471232.1| peptide chain release factor 1 [Rhizobium etli CFN 42]
gi|86283442|gb|ABC92505.1| peptide chain release factor 1 protein [Rhizobium etli CFN 42]
Length = 351
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 181/259 (69%), Gaps = 12/259 (4%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK---EIDGLKSL 126
+ERR +E ++ A PA Y K E +L+ +++++R +K E+ L++L
Sbjct: 4 LERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEKAVAELADLETL 57
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + S D++M D+A EL + L+ + LLPKD ADE+ ILE+RAGTGG EA
Sbjct: 58 LEDKSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEA 117
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLKFESG+HRV
Sbjct: 118 ALFAGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRV 177
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR
Sbjct: 178 QRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVR 237
Query: 307 VTHIPTGMTISIQDERSQH 325
+TH+PTG+ ++ E+SQH
Sbjct: 238 ITHLPTGIVVT-SSEKSQH 255
>gi|338972237|ref|ZP_08627612.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|414169115|ref|ZP_11424952.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
gi|338234401|gb|EGP09516.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|410885874|gb|EKS33687.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
Length = 361
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 160/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ EI G+ +LI + + D +M MA E
Sbjct: 32 YVRITRELSELAPVVDAVKAYRSAVDEIGGIDALIADAATDPEMRSMAESERPELEARRD 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK +++
Sbjct: 92 ELAQDIRIALLPKDAMDERNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVDLIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGTMGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 EVDVAIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|156389000|ref|XP_001634780.1| predicted protein [Nematostella vectensis]
gi|156221867|gb|EDO42717.1| predicted protein [Nematostella vectensis]
Length = 273
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 140/167 (83%)
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
++K+L+PKD+ADE D ILEVRAGTGG+EASLFA ++F MY+R++ K WKF+++ + SD
Sbjct: 1 IMKALIPKDEADENDAILEVRAGTGGQEASLFASEMFIMYQRFAAFKKWKFDILDIARSD 60
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
GYKEASA+ISG GV+GK+KFE G+HRVQRVP+TE GRVHTS ++VA+LPQ EVDV
Sbjct: 61 TGGYKEASASISGYGVFGKMKFEVGVHRVQRVPVTEAQGRVHTSTMTVAVLPQPQEVDVI 120
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
+ DL+IDT+R+ G+GGQH NTT+SAVR+THIP+GM +S Q+ERSQ
Sbjct: 121 ISPNDLKIDTFRASGAGGQHVNTTDSAVRITHIPSGMVVSSQEERSQ 167
>gi|15966364|ref|NP_386717.1| peptide chain release factor 1 [Sinorhizobium meliloti 1021]
gi|384530494|ref|YP_005714582.1| Peptide chain release factor 1 [Sinorhizobium meliloti BL225C]
gi|384537194|ref|YP_005721279.1| peptide chain release factor 1 [Sinorhizobium meliloti SM11]
gi|433614432|ref|YP_007191230.1| peptide chain release factor 1 [Sinorhizobium meliloti GR4]
gi|20139338|sp|Q92MK5.1|RF1_RHIME RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15075635|emb|CAC47190.1| Probable peptide chain release factor 1 (RF-1) protein
[Sinorhizobium meliloti 1021]
gi|333812670|gb|AEG05339.1| Peptide chain release factor 1 [Sinorhizobium meliloti BL225C]
gi|336034086|gb|AEH80018.1| peptide chain release factor 1 [Sinorhizobium meliloti SM11]
gi|429552622|gb|AGA07631.1| peptide chain release factor 1 [Sinorhizobium meliloti GR4]
Length = 360
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 190/276 (68%), Gaps = 24/276 (8%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQH 263
>gi|312127875|ref|YP_003992749.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis
108]
gi|311777894|gb|ADQ07380.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis
108]
Length = 355
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 181/269 (67%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + PE + E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ +++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++V+V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|163759877|ref|ZP_02166961.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43]
gi|162282835|gb|EDQ33122.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43]
Length = 361
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 9/269 (3%)
Query: 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK 116
L + I+ +E+R +E R A + PEA Y K E L+ + I L
Sbjct: 4 LPTEKIRELERRFGEVEARMAAGPD----PEA----YVKLASEYSDLQPLVDQIRALDAA 55
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
E L++++ + + DK+M D+A EL L+ + LLPKD ADER ILE
Sbjct: 56 LAERSDLEAMLQDTANDKEMRDLAESELRSTKVRIGELEEQIEIMLLPKDAADERSAILE 115
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LFA D+F+MYERY+ + WK EV+ +E + GYKE A ISG GV+ +
Sbjct: 116 IRAGTGGSEAALFAGDLFRMYERYASSRKWKVEVLSASEGEAGGYKEIIATISGKGVFAR 175
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R+ED+RIDT R+ G+GGQ
Sbjct: 176 LKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAEDIDIEVRSEDIRIDTMRASGAGGQ 235
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 236 HVNTTDSAVRITHLPTGLVVT-SSEKSQH 263
>gi|398826725|ref|ZP_10584962.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
gi|398220670|gb|EJN07113.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
Length = 361
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 162/233 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ KE+ ++LI + + D +M MA E + +
Sbjct: 32 YVQITRELAELSPLIDAVKTYRSAVKELADTEALIADATTDAEMRSMAEAERAELTPKIE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|407721678|ref|YP_006841340.1| peptide chain release factor 1 [Sinorhizobium meliloti Rm41]
gi|407319910|emb|CCM68514.1| Peptide chain release factor 1 [Sinorhizobium meliloti Rm41]
Length = 360
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 190/276 (68%), Gaps = 24/276 (8%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMERPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQH 263
>gi|307942489|ref|ZP_07657838.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
gi|307774310|gb|EFO33522.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
Length = 359
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 170/240 (70%), Gaps = 2/240 (0%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC-LAI 148
P+ Y K ++E L +H I L ++E+ ++++ + D +M ++A E LA
Sbjct: 27 PSTYVKLSREYSGLEPLVHKIRTLIKAEEELAEAEAMLDDADTDPEMRELAEAERDELAA 86
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
E Q + + LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+R+++ GWK
Sbjct: 87 SLETLTQDVRI-GLLPKDSADANDAILEVRAGTGGDEAALFAGDLFRMYQRFAELNGWKV 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E ++ G+KE A++SG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+L
Sbjct: 146 EVLSASEGEVGGFKEVIASVSGENVFARLKFESGVHRVQRVPATESGGRIHTSAATVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
PQA++VD+ + DLRIDT+R+ G+GGQH NTT+SAVR+TH PTG+ +++QDERSQH K
Sbjct: 206 PQAEDVDIEINESDLRIDTFRASGAGGQHVNTTDSAVRITHEPTGIVVAVQDERSQHKNK 265
>gi|304394129|ref|ZP_07376052.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
gi|303293569|gb|EFL87946.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
Length = 358
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 169/237 (71%), Gaps = 9/237 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA---TEELCLAID 149
Y K KE +L + I E++ Q E L ++ + D +M +MA E L AI+
Sbjct: 30 YVKLAKEYAELDPVVIKIGEMQAAQSEFADLAGMLADGDTDAEMKEMAQAEMEPLKAAIE 89
Query: 150 E-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
E E LQ LLL P+D+AD ++ ILE+RAGTGG EA+LFA D+F+MY+R+++ GWK
Sbjct: 90 EHEAELQILLL----PRDEADAKNAILEIRAGTGGSEAALFAGDLFRMYQRHAETSGWKV 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
+V+ + ++ GYKE A+I+G GV+ +LKFESG+HRVQRVP TE GRVHTSA +VA+L
Sbjct: 146 DVLSESAGEVGGYKEIIASINGTGVFARLKFESGVHRVQRVPETESGGRVHTSAATVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A++VD+ +RNED+RIDT R+ G+GGQH NTT+SAVR+THIPTG+ + + E+SQH
Sbjct: 206 PEAEDVDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGVVV-LSTEKSQH 261
>gi|407697445|ref|YP_006822233.1| peptide chain release factor 1 [Alcanivorax dieselolei B5]
gi|407254783|gb|AFT71890.1| Peptide chain release factor 1 [Alcanivorax dieselolei B5]
Length = 365
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 170/253 (67%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L L++ P+ A + +KE +L + E RT Q+ ++ ++L + D +M
Sbjct: 19 LSGLLSDPDVIAEQKRFRAYSKEYAELEPVVQGFREYRTTQENLETARALTEDS--DPEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
M EE+ A ++L+S L +++LPKD D LE+RAGTGG+EA+LFA D+F+M
Sbjct: 77 RAMGQEEVREAQARLEQLESDLQRAMLPKDPRDNAGVYLEIRAGTGGDEAALFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY+ ++GWK E V +E + GYKE A + G GVY +LKFESG HRVQRVP TE G
Sbjct: 137 YSRYADQRGWKVETVSASEGEHGGYKEVIARVMGDGVYSRLKFESGAHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA++ +A+E D+ +RNEDLRIDTYRS G+GGQH NTT+SAVR+TH+PTG+
Sbjct: 197 RIHTSACTVAVMAEAEEAGDIEIRNEDLRIDTYRSSGAGGQHVNTTDSAVRITHLPTGVV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|418403505|ref|ZP_12976993.1| peptide chain release factor 1 [Sinorhizobium meliloti CCNWSX0020]
gi|359502565|gb|EHK75139.1| peptide chain release factor 1 [Sinorhizobium meliloti CCNWSX0020]
Length = 360
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/273 (46%), Positives = 184/273 (67%), Gaps = 18/273 (6%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ + I
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQPVVSKIRAYAKATA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD ADE+
Sbjct: 58 ELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAADEKS 111
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG G
Sbjct: 112 AILEIRAGTGGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVSGRG 171
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT RS G
Sbjct: 172 VFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSG 231
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 232 AGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQH 263
>gi|241206502|ref|YP_002977598.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860392|gb|ACS58059.1| peptide chain release factor 1 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 359
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 189/270 (70%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M ++A EL ++ + L+ + LLPKD ADE+ IL
Sbjct: 55 AVAELADLETLLEDRSVDREMRELAELELPEVKEQIEVLEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|319406093|emb|CBI79723.1| peptide chain release factor 1 [Bartonella sp. AR 15-3]
Length = 359
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 182/266 (68%), Gaps = 4/266 (1%)
Query: 61 LIKIMEQRVLAIERRSACLEN-LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
++ + + R+ +E+R +E+ + P A Y K E +L+ + I L + KE
Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAET--YVKLASEYAELQPIIVSIRALNSLCKE 58
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I ++++I + D +M ++A EEL + + L+ L LLPKD ADE+ I+E+RA
Sbjct: 59 ITDIETIISDTQTDTEMRNLAQEELSSLYQKIQELEQELQILLLPKDIADEKSVIIEIRA 118
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG EA+LFA D+F+MYERY+ WK EV+ +++ ++ GYKE A ISG GV+ KLKF
Sbjct: 119 GTGGSEAALFAGDLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSKLKF 178
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTSA +VA+LP+A+E+D+ + ED+RIDT R+ G+GGQH N
Sbjct: 179 ESGVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEICPEDIRIDTMRASGAGGQHVN 238
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+THIPTG+ + +Q E+SQH
Sbjct: 239 TTDSAVRITHIPTGIMV-VQAEKSQH 263
>gi|15606216|ref|NP_213594.1| peptide chain release factor 1 [Aquifex aeolicus VF5]
gi|6225940|sp|O67032.1|RF1_AQUAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|2983407|gb|AAC06991.1| peptide chain release factor RF-1 [Aquifex aeolicus VF5]
Length = 362
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 183/263 (69%), Gaps = 4/263 (1%)
Query: 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
R+ ++ + L+ +++PE +Y K +KEL++L++ L + QKE+ K
Sbjct: 9 RLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQKELKEAKE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ S DKD+ ++A EE+ +E K+L+ L L+PKD D ++ ILE+RAG GGEE
Sbjct: 69 LL--KSSDKDLRELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRAGAGGEE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+F+MY++Y+++KGWK ++ ++ L GYKE A I G G Y +LK+ESG+HR
Sbjct: 127 AALFAADLFRMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE SGR+HTS +VA+LP+ DE D++++ E+L+I+T+R+ G+GGQ+ NTT +AV
Sbjct: 187 VQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAV 246
Query: 306 RVTHIPTGMTISIQDERSQHMVK 328
R+THIPTG+ + QDERSQ K
Sbjct: 247 RITHIPTGIVVQCQDERSQFQNK 269
>gi|337287822|ref|YP_004627294.1| Peptide chain release factor 1 [Thermodesulfobacterium sp. OPB45]
gi|334901560|gb|AEH22366.1| Peptide chain release factor 1 [Thermodesulfobacterium geofontis
OPF15]
Length = 368
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 169/241 (70%), Gaps = 1/241 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
++P Y+K KE +L + + E + +I K LI E D++++++A EEL
Sbjct: 32 SNPELYAKLAKEHAELLEIVETYREYKKILNQIKENKQLI-EVESDEELIELAKEELKEL 90
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L+ L LLPKD DE++ ILE+RAG GGEEA+LFA D+ +MY+RY++KKGWK
Sbjct: 91 ENRLEELEKKLPILLLPKDPNDEKNVILEIRAGAGGEEAALFAADLLRMYQRYAEKKGWK 150
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
F+++ E+ L G+KE A I G G Y +LK+ESG+HRVQRVP+TE SGR+HTS +VA+
Sbjct: 151 FDILDANETGLGGFKEVIAKIEGKGAYSRLKYESGVHRVQRVPITESSGRIHTSTATVAV 210
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMV 327
LP+ DEV V +R EDL+I+T R+ G GGQH N T SAVR+THIPTG+T++ Q+ERSQH
Sbjct: 211 LPEVDEVTVEIRPEDLKIETMRASGHGGQHVNKTESAVRITHIPTGITVTCQNERSQHQN 270
Query: 328 K 328
K
Sbjct: 271 K 271
>gi|255037851|ref|YP_003088472.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053]
gi|254950607|gb|ACT95307.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053]
Length = 357
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 179/267 (67%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI+ R + + QPE + YSK +KE + L + + + QK+I G
Sbjct: 1 MIDKLEAIKERFEEVSQQIIQPEVVSDSTRYSKISKEYKDLGRIVEQYALYQKLQKDIAG 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI +D+D+ +MA EEL + + + L+ + + L+PKD D R+ ILE+R GTG
Sbjct: 61 TKELI-ATEKDEDLREMAKEELDDLLPKLEELEQNIKELLIPKDPNDSRNIILEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K GW+ V+ TE GYKE + G VYGK+KFESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFIEKMGWRSSVMDYTEGTNGGYKEIICKVEGEDVYGKMKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV++ D+RIDT++S G+GGQ NTT
Sbjct: 180 VHRVQRVPATESQGRIHTSAASVAVLPEAEEVDVQINMNDVRIDTFQSSGAGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIP+G+ +S QDERSQ KD
Sbjct: 240 SAVRLTHIPSGLVVSCQDERSQLKNKD 266
>gi|110598269|ref|ZP_01386544.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031]
gi|110340077|gb|EAT58577.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031]
Length = 357
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 176/263 (66%), Gaps = 4/263 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ + LE L+ P A+ A + K NKE LR+ + + E+D
Sbjct: 1 MLDKLQSIKEKHLDLEQLLADPNAATDQARFRKLNKEYSDLREIVQAYDAYGQAKTELDQ 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ + D +M ++ E+ + L+ L LLPKD+AD R+ I+E+RAGTG
Sbjct: 61 SKKLL-DSESDPEMRELVQAEISELQKKLPELEQHLKVLLLPKDEADSRNVIVEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
GEEA+LFA D+ +MY+RY++K+GWK EV+ ES + G ++E + +SG VYG +K+ES
Sbjct: 120 GEEAALFAADILRMYQRYAEKQGWKCEVLHYNESSMPGGFREITLEVSGHDVYGTMKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSAVSVA+LP+A+EVDV +R EDLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPDTETQGRIHTSAVSVAVLPEAEEVDVEIRREDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
+AVR+TH+PTG+ + Q+ERSQ
Sbjct: 240 ETAVRITHMPTGIVSACQEERSQ 262
>gi|190893591|ref|YP_001980133.1| peptide chain release factor 1 [Rhizobium etli CIAT 652]
gi|190698870|gb|ACE92955.1| peptide chain release factor 1 protein [Rhizobium etli CIAT 652]
Length = 351
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/262 (48%), Positives = 183/262 (69%), Gaps = 12/262 (4%)
Query: 69 VLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK---EIDGL 123
+L +ERR +E ++ A PA Y K E +L+ +++++R +K E+ L
Sbjct: 1 MLELERRFDEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEKAVAELADL 54
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
+L+ + + D++M D+A EL + + L+ + LLPKD ADE+ ILE+RAGTGG
Sbjct: 55 DTLLEDKAVDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAILEIRAGTGG 114
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
EA+LFA D+F+MYER++ +KGWK EV+ +E + GYKE A I+G GV+ KLKFESG+
Sbjct: 115 SEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGV 174
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+S
Sbjct: 175 HRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDS 234
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+TH+P+G+ ++ E+SQH
Sbjct: 235 AVRITHLPSGIVVT-SSEKSQH 255
>gi|145218953|ref|YP_001129662.1| peptide chain release factor 1 [Chlorobium phaeovibrioides DSM 265]
gi|189039984|sp|A4SCF1.1|RF1_PROVI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145205117|gb|ABP36160.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium
phaeovibrioides DSM 265]
Length = 357
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 178/257 (69%), Gaps = 4/257 (1%)
Query: 71 AIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+I+ R LE L+ P+A+ + K NKE LR+ + +K+++ + L+
Sbjct: 7 SIKERHLDLERLLADPDAAGDQTRFRKLNKEYSDLREIVETYDRYSHIKKQLEDSRQLL- 65
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ +D++M + EE+ + L+ + LLPKD+AD R+ ILE+RAGTGGEEA+L
Sbjct: 66 KNEQDQEMKALVEEEIEELQRQIPALEQEIKVLLLPKDEADSRNVILEIRAGTGGEEAAL 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFESGIHRVQ 247
F D+F+MY+RY++K+GW F+++ ES + G ++EA+ +I+G V+G +K+ESG+HRVQ
Sbjct: 126 FTTDLFRMYQRYAEKQGWNFQMLDYNESSVPGGFREATISITGHDVFGTMKYESGVHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA SVA+LP+A+EVDV +R EDLR+DTYRSGG GGQ+ N +AVR+
Sbjct: 186 RVPDTETQGRIHTSAASVAVLPEAEEVDVEIRKEDLRLDTYRSGGKGGQNVNKVETAVRI 245
Query: 308 THIPTGMTISIQDERSQ 324
TH+PTGM + Q+ERSQ
Sbjct: 246 THMPTGMVAACQEERSQ 262
>gi|57239178|ref|YP_180314.1| peptide chain release factor 1 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579136|ref|YP_197348.1| peptide chain release factor 1 [Ehrlichia ruminantium str.
Welgevonden]
gi|58617189|ref|YP_196388.1| peptide chain release factor 1 [Ehrlichia ruminantium str. Gardel]
gi|75432752|sp|Q5FGZ2.1|RF1_EHRRG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|81557311|sp|Q5HB80.1|RF1_EHRRW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|57161257|emb|CAH58178.1| peptide release factor 1 [Ehrlichia ruminantium str. Welgevonden]
gi|58416801|emb|CAI27914.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str.
Gardel]
gi|58417762|emb|CAI26966.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str.
Welgevonden]
Length = 359
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 172/252 (68%), Gaps = 1/252 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++L+ P + S + A+KE +L + +I E QK+I L+ LI D ++
Sbjct: 17 LKHLLEDPSQLSVESFVNASKEYSELLPIISVIDEYNAVQKDIKDLQELINNQETDTELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EE + +++ L SLLPKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 NLAKEEFYELQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y++KK WK E + + + + G+KE S +SG V+ KLKFESG+HRVQRVP TE SGR
Sbjct: 137 IKYAEKKNWKIEQINSSSTGIGGHKEVSLCVSGSNVFAKLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMVKD 329
QDE+SQH K+
Sbjct: 257 QQDEKSQHKNKN 268
>gi|456358592|dbj|BAM93037.1| peptide chain release factor 1 [Agromonas oligotrophica S58]
Length = 361
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 161/233 (69%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R+ KE+ ++LI + + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRSGVKELADTEALIADAASDAEMRGMAEAERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|383768854|ref|YP_005447917.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
gi|381356975|dbj|BAL73805.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
Length = 361
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 165/236 (69%), Gaps = 6/236 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL ++ + + R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQVTRELAEITPLIEAVKTYRSAVKELADTEALIADPTTDAEMRSMAEAERDELHPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA++P
Sbjct: 149 VISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVMP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ +EVDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 209 EVEEVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|88657945|ref|YP_507408.1| peptide chain release factor 1 [Ehrlichia chaffeensis str.
Arkansas]
gi|119361539|sp|Q2GGM5.1|RF1_EHRCR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88599402|gb|ABD44871.1| peptide chain release factor 1 [Ehrlichia chaffeensis str.
Arkansas]
Length = 359
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 172/251 (68%), Gaps = 1/251 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + QK+I GL+ LI D ++
Sbjct: 17 LKSMLEDPSQLSVDSFVAASKEYSELLPVISVIDQYNILQKDIAGLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + +++ L SLLPKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMVK 328
QDE+SQH K
Sbjct: 257 QQDEKSQHKNK 267
>gi|88606704|ref|YP_505023.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
gi|119361507|sp|Q2GKS8.1|RF1_ANAPZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88597767|gb|ABD43237.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
Length = 359
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 165/233 (70%)
Query: 96 ANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 155
A++E L M LI + ++ QKEI L+ L+ S D ++ +A +E + +L+
Sbjct: 35 ASREYSDLLPIMSLIEKYKSTQKEIAELEELVNSASTDPELRSLAKDESHIKQKLLPKLR 94
Query: 156 SLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTE 215
L SLLPKD D R+ ILE+RAGTGGEEA+LF ++++MY +Y+++K WK E + ++
Sbjct: 95 HELQLSLLPKDRDDSRNAILEIRAGTGGEEAALFVGNLYRMYLKYAERKNWKVETINIST 154
Query: 216 SDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD 275
+ + GYKEAS +I G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+ +EVD
Sbjct: 155 TGIGGYKEASFSIGGKDVFARLKFESGVHRVQRVPETESSGRLHTSAATVAVLPEVEEVD 214
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+++ +DLRID YRS G GGQ NTT+SAVR+THIPTG+ + QDE+SQH K
Sbjct: 215 LKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNK 267
>gi|405382555|ref|ZP_11036336.1| peptide chain release factor 1 [Rhizobium sp. CF142]
gi|397320961|gb|EJJ25388.1| peptide chain release factor 1 [Rhizobium sp. CF142]
Length = 359
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 187/270 (69%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ +++++R QK
Sbjct: 1 MAKLPIEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVTKIRAYQK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D+DM ++A EL + + L++ + LLPKD ADE+ IL
Sbjct: 55 AVGELADLEALLEDKSVDRDMRELAELELPDVKERIEALENEIQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGNEAALFAGDLFRMYERYASTHGWKVEVLSSSEGEAGGYKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|148258772|ref|YP_001243357.1| peptide chain release factor 1 [Bradyrhizobium sp. BTAi1]
gi|146410945|gb|ABQ39451.1| bacterial peptide chain release factor 1 (bRF-1) [Bradyrhizobium
sp. BTAi1]
Length = 361
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 160/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRAGVKELADTEALIADPATDAEMRAMAEAERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 EVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|334317369|ref|YP_004549988.1| peptide chain release factor 1 [Sinorhizobium meliloti AK83]
gi|334096363|gb|AEG54374.1| Peptide chain release factor 1 [Sinorhizobium meliloti AK83]
Length = 360
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 190/276 (68%), Gaps = 24/276 (8%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA ++F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGNLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+A+E+D+ +R ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
S G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 229 SSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQH 263
>gi|402771362|ref|YP_006590899.1| peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
gi|401773382|emb|CCJ06248.1| Peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
Length = 356
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 157/216 (72%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
I R QKE D L +++ + S D +M +A E A + +S L +LLPKD+AD
Sbjct: 47 IRAYRAAQKESDDLSAMLADASLDAEMRRLAESETEAAHERLAAAESALKLALLPKDEAD 106
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILEVRAGTGG+EA+LFA D+F+ Y++Y+ KGW+ E+V +E L G+KE A I
Sbjct: 107 EKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVEIVSGSEGALGGFKEIVAEII 166
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GVYG+LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VDV + +DL+IDT R
Sbjct: 167 GRGVYGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPQAEDVDVDIDEKDLQIDTMR 226
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ G+GGQH N T SA+R+THIP+G+ + +Q+ERSQH
Sbjct: 227 AQGAGGQHVNKTESAIRITHIPSGIVVMMQEERSQH 262
>gi|328542097|ref|YP_004302206.1| peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
gi|326411847|gb|ADZ68910.1| Peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
Length = 357
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 104/167 (62%), Positives = 138/167 (82%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD AD D ILEVRAGTGG+EA+LFA D+F+MY+RY+ KGWK E++ +E ++ G+
Sbjct: 99 LLPKDSADTNDAILEVRAGTGGDEAALFAGDLFRMYQRYADLKGWKVEILSASEGEMGGF 158
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A++SG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VD+ + +
Sbjct: 159 KEVIASVSGENVFARLKFESGVHRVQRVPETESGGRIHTSAATVAVLPQAEDVDIDVHDS 218
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
DLRIDTYR+ G+GGQH NTT+SAVR+TH+PTG+ +++QDERSQH K
Sbjct: 219 DLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVAVQDERSQHKNK 265
>gi|414165000|ref|ZP_11421247.1| peptide chain release factor 1 [Afipia felis ATCC 53690]
gi|410882780|gb|EKS30620.1| peptide chain release factor 1 [Afipia felis ATCC 53690]
Length = 358
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 174/252 (69%), Gaps = 3/252 (1%)
Query: 75 RSACLE-NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSED 133
R A LE L+ Q A Y +A +EL ++ + + R E+ L+S+I + + D
Sbjct: 13 RHATLEAELMGQVSADT--YVRATRELAEITPVVDAVKAYRAGASELADLESMIADPATD 70
Query: 134 KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDV 193
DM MA E ++ + L+ + +LLPKD DER+ +LEVRAGTGG+EASLFA D+
Sbjct: 71 ADMRAMAESERPALLERQTELEQHIRIALLPKDAMDERNVMLEVRAGTGGDEASLFAGDL 130
Query: 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTE 253
F+MYER++ +GWK EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 131 FRMYERFATLQGWKVEVISASEGTMGGYKEIVAEVQGRGAFAKLKFESGVHRVQRVPDTE 190
Query: 254 KSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTG 313
SGR+HTSA +VA+LP+A+++D+ +++ DLRI+T R+ G+GGQH N T SA+R+THIPTG
Sbjct: 191 ASGRIHTSAATVAVLPEAEDIDIDIKDTDLRIETMRAQGAGGQHVNKTESAIRITHIPTG 250
Query: 314 MTISIQDERSQH 325
+ +++QD RSQH
Sbjct: 251 IVVNMQDSRSQH 262
>gi|384213954|ref|YP_005605117.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
gi|354952850|dbj|BAL05529.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
Length = 361
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 164/236 (69%), Gaps = 6/236 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL +L + + R+ KE+ +LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAELAPLIEAVKAYRSAVKELADTAALIGDPATDAEMRGMAEAERDELTPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A I G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 149 VISASEGTVGGYKEIIAEIQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ ++VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 209 EVEDVDVEIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|399037191|ref|ZP_10734070.1| peptide chain release factor 1 [Rhizobium sp. CF122]
gi|398065183|gb|EJL56834.1| peptide chain release factor 1 [Rhizobium sp. CF122]
Length = 359
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 186/270 (68%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQP---VVTKIRVYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L++L+ + S D++M D+A EL + + L+ + LLPKD ADE+ IL
Sbjct: 55 AIAELADLETLLNDKSVDREMRDLAELELPEVKERLEALEQEIQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ +E + G+KE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERYAAAHGWKVEVLSSSEGEAGGFKEIIATITGKGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|393774342|ref|ZP_10362707.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
gi|392720198|gb|EIZ77698.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
Length = 356
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 165/233 (70%), Gaps = 3/233 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ A+++ +L + +E+ + + E++ L+SL D +M +A EE+ E
Sbjct: 32 FVAASRDYAELEPVARIAAEIMSMRGELESLQSL---EDPDPEMRALAAEEVARLKTELP 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ + S+LP+D AD R +LE+RAGTGG+EA+LFA D+++MYERY+ + GW+ E+V
Sbjct: 89 EAERRMAISMLPRDAADARPAMLEIRAGTGGDEAALFAADLYRMYERYAAELGWRVEMVS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
SD+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+
Sbjct: 149 ANASDVGGFKEVVANVTGNGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPT 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV++ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+PT + + QDERSQH
Sbjct: 209 EVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPTNLVVICQDERSQH 261
>gi|296445919|ref|ZP_06887870.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b]
gi|296256587|gb|EFH03663.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b]
Length = 356
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/256 (48%), Positives = 168/256 (65%), Gaps = 2/256 (0%)
Query: 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
L + R L P+A A + ++EL L D + I R EI GL ++ +
Sbjct: 9 LILRRHDEIGARLAAGPDA--ASFVALSRELATLDDVVARIRTWRATSAEIAGLGEMLAD 66
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+ + +M EL A + L +LLPKD ADE+ ILEVRAGTGG+EA+LF
Sbjct: 67 PALEPEMRAFVEGELDAAESALASAEQELKLALLPKDSADEKGVILEVRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+ Y++Y+ KGW E++ +E L GYKE A ISG GVY +LKFESG+HRVQRV
Sbjct: 127 AGDLFRAYQKYAGVKGWGVEILSASEGALGGYKEIVAEISGRGVYARLKFESGVHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VA+LPQA+EVDV + ++DL+I+T RSGG+GGQH N T SA+R+TH
Sbjct: 187 PATETQGRIHTSAATVAVLPQAEEVDVAIDDKDLQIETMRSGGAGGQHVNKTESAIRITH 246
Query: 310 IPTGMTISIQDERSQH 325
+P+G+ + +Q+ERSQH
Sbjct: 247 LPSGIVVMMQEERSQH 262
>gi|302390589|ref|YP_003826410.1| peptide chain release factor 1 (bRF-1) [Thermosediminibacter oceani
DSM 16646]
gi|302201217|gb|ADL08787.1| bacterial peptide chain release factor 1 (bRF-1)
[Thermosediminibacter oceani DSM 16646]
Length = 364
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 171/261 (65%), Gaps = 2/261 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
AIE R L +++P A E+ K KE L + + E + EI + L+
Sbjct: 7 AIEERYEELTREISEPAVIARQEEWRKLAKEHASLEEIVSCYREYKKVVSEIKESRELLK 66
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E S D++M + EEL EK LQ L LLPKD DE+D I+E+RAG GGEEA+L
Sbjct: 67 ETSNDREMEEFIKEELENLQKREKELQERLKILLLPKDPNDEKDVIMEIRAGAGGEEAAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++++GWK E++ + ++L G+KE + G G Y +LK+ESG+HRVQR
Sbjct: 127 FAGDLFRMYTRYAERQGWKVELMSSSPTELGGFKEVIFEVMGRGAYSRLKYESGVHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
+P+TE GR+HTS +VA+LP+A+EVDV + +LRID +RS G GGQ NTT+SAVR+T
Sbjct: 187 IPVTEAGGRIHTSTATVAVLPEAEEVDVEINPNELRIDVFRSSGHGGQSVNTTDSAVRIT 246
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PTG+ ++ QDERSQ +D
Sbjct: 247 HLPTGIVVTCQDERSQLKNRD 267
>gi|227823188|ref|YP_002827160.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234]
gi|227342189|gb|ACP26407.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234]
Length = 352
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 175/256 (68%), Gaps = 6/256 (2%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+ERR A +E ++ A P+ Y K E +L+ + I E+ ++ L+ +
Sbjct: 4 LERRFAEIEARMS---AGPSADVYVKLASEYSELQPVVTKIRAYEKATAELADIEVLLSD 60
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+ DK+M D+A E + + L+ + LLPKD ADE+ ILE+RAGTGG EA+LF
Sbjct: 61 RATDKEMRDLAEMERPEVEERIEALEEEIQILLLPKDAADEKSAILEIRAGTGGSEAALF 120
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MYERY+ KGW+ EV+ +E + GYKE A +SG GV+ +LKFESG+HRVQRV
Sbjct: 121 AGDLFRMYERYAAAKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRV 180
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH
Sbjct: 181 PETEASGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITH 240
Query: 310 IPTGMTISIQDERSQH 325
+PTG+ ++ E+SQH
Sbjct: 241 LPTGIVVT-SSEKSQH 255
>gi|385808994|ref|YP_005845390.1| protein chain release factor A [Ignavibacterium album JCM 16511]
gi|383801042|gb|AFH48122.1| Protein chain release factor A [Ignavibacterium album JCM 16511]
Length = 359
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 177/255 (69%), Gaps = 3/255 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+++R + L + PE +P + NKE ++ D + + + K+I+G K +I
Sbjct: 10 VKQRYDQINELYSNPEYINNPEKMIALNKEKSEIEDVVQVYEKYVKILKDIEGNKEIINN 69
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+E K+++DMA E+ ++++L+ + LLPKD D+++ I+E+RAGTGGEEA+LF
Sbjct: 70 STE-KELVDMAYAEMDELNAQKEKLEEEIKVLLLPKDPNDDKNVIMEIRAGTGGEEAALF 128
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++ +GWK+E++ + E+ L G KE ++SG VYG LK+ESG+HRVQRV
Sbjct: 129 ANDLFRMYTRYAEIRGWKYEIIDLNETGLGGIKEVILSVSGDNVYGDLKYESGVHRVQRV 188
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGRVHTSA SVA+LP+ ++V+V + DL+ID +RSGG+GGQ+ N +AVR+TH
Sbjct: 189 PETEASGRVHTSAASVAVLPEVEDVEVEINPNDLKIDIFRSGGAGGQNVNKVETAVRITH 248
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ + QDERSQ
Sbjct: 249 LPTGIVVQCQDERSQ 263
>gi|170746587|ref|YP_001752847.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
gi|226739115|sp|B1M766.1|RF1_METRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|170653109|gb|ACB22164.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
Length = 361
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 172/265 (64%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I +R+ AI R + + E P + ++EL L + I R + +
Sbjct: 1 MIPFPTERLDAILARHDIVTAQLASGEIDPETVVQLSRELSDLDPVVAAIRAYRAALENL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++LI E D +M +A EE A+ + L LLPKD ADE+ ILEVRAG
Sbjct: 61 AGVEALIDEPGTDPEMRALAAEEKPEALAALETAHRALQLLLLPKDAADEKSAILEVRAG 120
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E + G++E A + G GV+ +LKFE
Sbjct: 121 TGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGFREVVAEVKGRGVFARLKFE 180
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + + DL+IDT R+ G+GGQH N
Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDIHVNDADLKIDTMRAQGAGGQHVNK 240
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T SA+R+TH+PTG+ + +Q+ERSQH
Sbjct: 241 TESAIRITHLPTGIVVFVQEERSQH 265
>gi|73667064|ref|YP_303080.1| peptide chain release factor 1 [Ehrlichia canis str. Jake]
gi|119361538|sp|Q3YS23.1|RF1_EHRCJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72394205|gb|AAZ68482.1| bacterial peptide chain release factor 1 (bRF-1) [Ehrlichia canis
str. Jake]
Length = 359
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/252 (46%), Positives = 174/252 (69%), Gaps = 1/252 (0%)
Query: 79 LENLVNQP-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
L++++ P + S + A+KE +L + +I + + QK+I L+ LI D ++
Sbjct: 17 LKSILEDPSQLSVDSFVAASKEYSELLPVISVIDQYNSLQKDIADLEELINNPETDHELK 76
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
+A EE + ++++ L SL+PKD D R+ ILE+RAGTGGEEA+LF D+++MY
Sbjct: 77 SLAKEEFYERQKQLPKIKNKLKLSLIPKDRDDARNAILEIRAGTGGEEAALFVTDLYRMY 136
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
+Y+++K WKFE + + + + G+KE S ISG V+ +LKFESG+HRVQRVP TE SGR
Sbjct: 137 TKYAEQKNWKFEQINSSSTGIGGHKEVSLCISGSNVFARLKFESGVHRVQRVPETEASGR 196
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSA +VA+LP+ +EVD+++ +DLRID YRS G GGQ NTT+SAVR+THIP+G+ +
Sbjct: 197 LHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPSGIVVI 256
Query: 318 IQDERSQHMVKD 329
QDE+SQH K+
Sbjct: 257 QQDEKSQHKNKN 268
>gi|409439217|ref|ZP_11266276.1| peptide chain release factor RF-1 [Rhizobium mesoamericanum
STM3625]
gi|408749122|emb|CCM77455.1| peptide chain release factor RF-1 [Rhizobium mesoamericanum
STM3625]
Length = 359
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/274 (47%), Positives = 185/274 (67%), Gaps = 20/274 (7%)
Query: 61 LIKIMEQRVLAIERRSACLE-NLVNQPEAS-----PAEYSKANKELRKLRDSMHLISELR 114
+ K+ +++ +ERR +E + + P A +EYS+ + K+R I+EL
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSDGPSADVYVKLASEYSELQPVVTKIRAYEKAIAELA 60
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADER 171
L+ L+ + S D++M D+A EL D ++RL++L + LLPKD ADE+
Sbjct: 61 D-------LEVLLNDKSVDREMRDLADLELP---DVKERLEALEQEIQILLLPKDAADEK 110
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
ILE+RAGTGG EA+LFA D+F+MYERY+ GWK EV+ ++ + G+KE A I+G
Sbjct: 111 SAILEIRAGTGGSEAALFAGDLFRMYERYAAAHGWKVEVLSSSDGEAGGFKEIIATITGK 170
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSG 291
GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS
Sbjct: 171 GVFAKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSS 230
Query: 292 GSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 231 GAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|317052432|ref|YP_004113548.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
gi|316947516|gb|ADU66992.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
Length = 355
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 185/267 (69%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE R L ++ P A+ +A +EL +LR+ + + +T ++E+
Sbjct: 1 MLEKLQDIEDRYELLSAELSHPGATADTQRLQQATRELSELREVVEAFQQFKTVRRELAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ ++ +D+++ +M +E+ +E++L+ L + LLP+D D ++ ILE+RAGTG
Sbjct: 61 NQEMLT-SEKDRELREMIQQEIQSLRHQEQQLEDTLTELLLPRDPNDTKNIILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY+ ++GWK EV+ V E+ G++E + I G VY +LKFESG
Sbjct: 120 GEEAALFATDLFRMYSRYADERGWKVEVLSVNETGNGGFREIISMIEGRNVYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE SGR+HTSAV+VA+LP+A+EVD+ + DLRID YRS G+GGQH NTT+
Sbjct: 180 THRVQRVPQTESSGRIHTSAVTVAVLPEAEEVDIDINPADLRIDVYRSSGAGGQHVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVRVTHIPTG++++ Q+ RSQH K+
Sbjct: 240 SAVRVTHIPTGVSVACQEGRSQHKNKE 266
>gi|218672481|ref|ZP_03522150.1| peptide chain release factor 1 [Rhizobium etli GR56]
Length = 352
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 186/270 (68%), Gaps = 12/270 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ +++++R +K
Sbjct: 1 MAKLPVEKMRELERRFDEIEARMS---AGPAADVYVKLASEYSELQP---VVTKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
E+ L +L+ + S D++M D+A EL + + L+ + LLPKD ADE+ IL
Sbjct: 55 AVAELADLDTLLEDKSVDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAIL 114
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG EA+LFA D+F+MYER++ +K WK EV+ +E + GYKE A I+G GV+
Sbjct: 115 EIRAGTGGSEAALFAGDLFRMYERFAAEKSWKVEVLSASEGEAGGYKEIIATITGRGVFA 174
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GG
Sbjct: 175 KLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGG 234
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 235 QHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|27375329|ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
gi|32171530|sp|Q89XT9.1|RF1_BRAJA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27348465|dbj|BAC45483.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 166/237 (70%), Gaps = 8/237 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
Y + +EL ++ + + R+ KE+ ++LI + + D +M MA E DE
Sbjct: 32 YVQITRELAEITPLIEAVKTYRSAVKELADTEALIADPATDAEMRGMAEAER----DELA 87
Query: 152 KRLQSLLLK---SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
R++ L+ K +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK
Sbjct: 88 PRIEDLVQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKV 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+L
Sbjct: 148 EVISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+ ++VDV ++N+DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 208 PEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|212703639|ref|ZP_03311767.1| hypothetical protein DESPIG_01684 [Desulfovibrio piger ATCC 29098]
gi|212672934|gb|EEB33417.1| peptide chain release factor 1 [Desulfovibrio piger ATCC 29098]
Length = 356
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/266 (49%), Positives = 176/266 (66%), Gaps = 4/266 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ +Y K K LRD + L R+ +E++
Sbjct: 1 MFAKLEGLEKKYMELEQALAQPDVYNDQDQYRKLTKAHADLRDVVELFRRHRSLTQELEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+++ D D+ MA EE+ A E L+ + LLPKD DE++ ILE+RAGTG
Sbjct: 61 NKQLLHDS--DPDIKAMAQEEIAAAEAELPELEHKIKVLLLPKDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ KGWK E++ + SD GYKE ISG VY LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAEIKGWKVEIMSESPSDSGGYKEIICLISGDRVYSHLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVR+THIPTG ++ QDERSQH K
Sbjct: 239 SAVRITHIPTGTVVTCQDERSQHKNK 264
>gi|148284270|ref|YP_001248360.1| peptide chain release factor 1 [Orientia tsutsugamushi str.
Boryong]
gi|166223581|sp|A5CCS8.1|RF1_ORITB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146739709|emb|CAM79522.1| peptide chain release factor [Orientia tsutsugamushi str. Boryong]
Length = 359
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 177/250 (70%), Gaps = 1/250 (0%)
Query: 79 LENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
LE +N + E + +KE L+ + ++ + I L+ +I + +D ++
Sbjct: 17 LEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI-DTEQDLELKS 75
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
+A EL ++ +L+ + SLLPK+ D ++ I+EVRAGTGG+EA+LFA +F+MY
Sbjct: 76 IAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAALFAASLFQMYN 135
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
+Y+++K WKFE++ ++++++ G KEASA ISG GV+ LKFESG+HRVQR+P TE +GR+
Sbjct: 136 KYAERKKWKFELLSISDTEIGGCKEASALISGNGVFANLKFESGVHRVQRIPKTESNGRI 195
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +V +LP+A+EVDV++ +DL+IDTYR+ G+GGQH NTT+SAVR+THIPTG+ +S
Sbjct: 196 HTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVSQ 255
Query: 319 QDERSQHMVK 328
QDE+SQH K
Sbjct: 256 QDEKSQHKNK 265
>gi|367472871|ref|ZP_09472444.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
gi|365274841|emb|CCD84912.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
Length = 361
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 159/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E I
Sbjct: 32 YVQITRELAELNPLIEAVKAYRAGVKELADTEALIADPETDAEMRAMAETERDELIARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIA 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|150397700|ref|YP_001328167.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419]
gi|166223607|sp|A6UCF2.1|RF1_SINMW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|150029215|gb|ABR61332.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419]
Length = 360
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/276 (46%), Positives = 190/276 (68%), Gaps = 24/276 (8%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A P+ Y K E +L+ ++S++R +K
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPSADVYVKLASEYSELQ---PVVSKIRAYEK 54
Query: 119 ---EIDGLKSLIYECSEDKDMLDMA------TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
E+ + +++ + + DKDM D+A EE A+++E +Q LLL PKD AD
Sbjct: 55 ATAELADIGAMLADRATDKDMRDLAELEKPEIEERVEALEQE--IQILLL----PKDAAD 108
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
E+ ILE+RAGTGG EA+LFA D+F+MYERY+ KGW+ EV+ +E + GYKE A +S
Sbjct: 109 EKSAILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVS 168
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+++D+ +R+ED+R+DT R
Sbjct: 169 GRGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRSEDIRVDTMR 228
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
S G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 229 SSGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQH 263
>gi|262277608|ref|ZP_06055401.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
gi|262224711|gb|EEY75170.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
Length = 355
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 177/261 (67%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V I R LE ++Q + Y K +KE + D + + ++ +G + ++
Sbjct: 6 KVKEIISRYETLEKTLSQTDIDKNTYVKNSKEYSSIGDIIIDVKNYIKMVEDKEGSEKIL 65
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+ S DK++ +MA EL ++ L++ + +LPKD+ADE++ I+E+RAGTGG EAS
Sbjct: 66 EDKSADKELKEMAELELNEIKEKIGDLETKIKIFMLPKDEADEKNAIIEIRAGTGGLEAS 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MY++ + GWK E++ +++SD GYKE +++G V+ KLKFESG+HRVQ
Sbjct: 126 LFAGDLFEMYQKVASNNGWKTEIISISDSDAGGYKEVVFSVTGKNVFSKLKFESGVHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GRVHTSA +VA+LP+A++VDV++ +LRID +RS G GGQ NTT+SAVR+
Sbjct: 186 RVPKTETQGRVHTSAATVAVLPEAEDVDVKIDENELRIDVFRSSGPGGQSVNTTDSAVRI 245
Query: 308 THIPTGMTISIQDERSQHMVK 328
THIP+G+ +S QDE+SQH K
Sbjct: 246 THIPSGIVVSQQDEKSQHKNK 266
>gi|152989856|ref|YP_001355578.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2]
gi|166223578|sp|A6Q162.1|RF1_NITSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151421717|dbj|BAF69221.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2]
Length = 354
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/252 (49%), Positives = 172/252 (68%), Gaps = 4/252 (1%)
Query: 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE---CSEDKDML 137
N +N+ +SP E ++ K++ L I + K KE + I E ED+++
Sbjct: 14 NEINELLSSP-EITQDIKKMTALSKEQSEIEPIVEKAKEYMNILEAIEENRSLIEDEELG 72
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EEL ++++L+ + L+ KD DE+D LE+RAGTGGEEA+LFA D+FK Y
Sbjct: 73 ELAKEELKELEPKKEQLEEEIKVLLISKDPNDEKDIYLEIRAGTGGEEAALFASDLFKAY 132
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
RY++KKGW+ E+V +ESD GYKE A I G GVY +LK+E+G HRVQRVP TE GR
Sbjct: 133 ARYAEKKGWRVEIVSSSESDSGGYKEIIAKIKGQGVYSRLKYEAGTHRVQRVPETESQGR 192
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
+HTSAV+VAI+P+ D+VDV + DL+ID YRS G GGQ NTT+SAVR+THIPTG+ ++
Sbjct: 193 IHTSAVTVAIMPEVDDVDVEINPNDLKIDVYRSSGHGGQSVNTTDSAVRITHIPTGIVVA 252
Query: 318 IQDERSQHMVKD 329
+QDE+SQH K+
Sbjct: 253 MQDEKSQHKNKE 264
>gi|312134918|ref|YP_004002256.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL]
gi|311774969|gb|ADQ04456.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL]
Length = 355
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 180/269 (66%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE + LE + P+ + E+ K KE L+ ++ + R ++ ++
Sbjct: 1 MIEKLQVIEEKYLELEKKIADPDIISQTQEWQKLMKEHSNLQP---IVEKFREYKRILNT 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+K + + D+D + EEL A ++++ ++ L LLPKD DE++ I+E+RAG
Sbjct: 58 IKEAEELLDTDIDEDFEKLVKEELNWAKEQKEIVERDLKILLLPKDPNDEKNVIMEIRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GGEEA+LFA ++F+MY RY+++K WK EV+ +ESDL G+KE ISG G Y +LK+E
Sbjct: 118 AGGEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GR+HTS +VA+LP+ ++++V +R EDL IDT+R+GG+GGQH N
Sbjct: 178 SGVHRVQRVPVTESGGRIHTSTATVAVLPEVEDIEVEIREEDLEIDTFRAGGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H PTG+ ++ QDERSQH +D
Sbjct: 238 TESAVRIVHKPTGIVVTCQDERSQHANRD 266
>gi|330813117|ref|YP_004357356.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486212|gb|AEA80617.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
IMCC9063]
Length = 357
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/259 (46%), Positives = 175/259 (67%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+++ +I R LE+ +++ + E+ K +KE + + + I K+ + LK +
Sbjct: 5 EKLESIVNRYNDLESSLSKTDIDKKEFVKNSKEYSSIGEIIETIKSYIDAIKDKEDLKKI 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + D ++ +MA +L +E+ + + LLPKD+ADE++ I+E+RAGTGG EA
Sbjct: 65 LSDKDSDIEIREMAEHDLEEIKSKEQEYEKKVKVFLLPKDEADEKNAIVEIRAGTGGLEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
SLFA D+F MY++ S GW+ EV+ V+ S+ GYKE I+G V+ KLKFESG+HRV
Sbjct: 125 SLFASDLFNMYQKVSSINGWRVEVLSVSASEAGGYKEIVFTITGKNVFSKLKFESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GRVHTSA +VA+L +A+EVDV++ DLRID +RSGG GGQ NTT+SAVR
Sbjct: 185 QRVPDTETQGRVHTSAATVAVLAEAEEVDVKIDENDLRIDVFRSGGPGGQSVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQH 325
+THIPTG+ ++IQDE+SQH
Sbjct: 245 ITHIPTGVVVAIQDEKSQH 263
>gi|421596648|ref|ZP_16040424.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
gi|404271243|gb|EJZ35147.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
Length = 361
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 165/236 (69%), Gaps = 6/236 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLAID 149
Y + +EL ++ + L+ R+ KE+ ++LI + + D +M MA +EL I+
Sbjct: 32 YVQITRELAEITPLIELVKAYRSAVKELADTEALIADPATDPEMRSMAEAERDELAPKIE 91
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E L + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK E
Sbjct: 92 E---LVQQIRVALLPKDAMDDRNVMLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVE 148
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 149 VISASEGTVGGYKEIIAEVQGRGAFSKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLP 208
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ ++V+V ++ EDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 209 EVEDVEVDIKTEDLRIETMRAQGAGGQHVNKTESAIRITHMPTGIVVMMQDSRSQH 264
>gi|383649036|ref|ZP_09959442.1| peptide chain release factor 1 [Sphingomonas elodea ATCC 31461]
Length = 357
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/273 (45%), Positives = 176/273 (64%), Gaps = 12/273 (4%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+ +I R+ AIE R L+ L+ E + + + +KE ++ +R + E
Sbjct: 1 MTRIPADRIAAIEARRDELQALMASGELAGDRFVQVSKEYAEIEPVAVAAGNVRRLRAEG 60
Query: 121 DGLKSLIYECSEDKDMLDMATEEL-----CLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
+ L+ + + D ++ MA EEL LA E K L +LLPKD ADER +L
Sbjct: 61 ESLQQMTQDA--DDELRAMAVEELRANEGTLAEAERK-----LALALLPKDAADERPALL 113
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAG GG+EA+LFA D+ +MY+RY+ + GW+ E++ + S+ GYKE I+G GV+
Sbjct: 114 EIRAGVGGDEAALFAGDLLRMYQRYADRLGWRTELISASTSEAGGYKEVVVGITGTGVFA 173
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E DV++ ++DLRID YR+ G GG
Sbjct: 174 KLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAEEADVQIDDKDLRIDIYRASGPGG 233
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
Q NTT+SAVR+TH+PTG+ + QDERSQH K
Sbjct: 234 QGVNTTDSAVRITHLPTGIVVIQQDERSQHKNK 266
>gi|373454431|ref|ZP_09546297.1| peptide chain release factor 1 [Dialister succinatiphilus YIT
11850]
gi|371935706|gb|EHO63449.1| peptide chain release factor 1 [Dialister succinatiphilus YIT
11850]
Length = 360
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 177/264 (67%), Gaps = 9/264 (3%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+E R LE+ ++ P A + +KE +L D + E + + + K ++
Sbjct: 8 GMEARYVTLEDQLSDPSVIADQNRWRTLSKEHAELGDIVARYREYKEADQAVRDAKDILE 67
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLL---KSLLPKDDADERDCILEVRAGTGGEE 185
+ S+ D+ ++A E+L + EK+++ L L K L+PKD D ++ ILE+RAGTGGEE
Sbjct: 68 DKSQ-ADLHELAKEDLK---ENEKKMEELDLEIHKMLIPKDPNDGKNVILEIRAGTGGEE 123
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+ KMY +++++KGWK E+ E+DL G+KE + I G Y LKFESG+HR
Sbjct: 124 AALFAADLLKMYIKFAERKGWKLEIANANETDLGGFKEVTCTIEGKNAYSILKFESGVHR 183
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE GRVHTSAV+VA+LP+A++VDV +R EDLRID YRS G+GGQH N T+SA+
Sbjct: 184 VQRIPETESQGRVHTSAVTVAVLPEAEDVDVDIRREDLRIDVYRSSGAGGQHINKTSSAI 243
Query: 306 RVTHIPTGMTISIQDERSQHMVKD 329
R+TH+PTGM ++ Q+ERSQ K+
Sbjct: 244 RITHLPTGMVVTCQNERSQRQNKE 267
>gi|225848358|ref|YP_002728521.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644346|gb|ACN99396.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 360
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 176/264 (66%), Gaps = 4/264 (1%)
Query: 63 KIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
KI++Q + IE + LE L+ PE P++ KE + L + + L ++ +I
Sbjct: 4 KILDQ-IKNIEEKVKKLEQLLTDPEVLKDPSKIQSIAKEHKDLSEILSLYNQYEKVNFQI 62
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ +K LI +ED E L + + + + L + LPKD DE++ ILE+R G
Sbjct: 63 EEVKQLINSTTEDDLRELAELELEELKQELSELEKKIEL-AFLPKDPNDEKNVILEIRQG 121
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGGEEA+LFA ++F+MY+RY+++ GWK EV+ + +D G KE A I G G Y +LK+E
Sbjct: 122 TGGEEAALFAAELFRMYQRYAERHGWKTEVLSIHPTDRGGVKEVIALIKGKGAYSRLKYE 181
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE SGR+HTS +VA+LP+A+EVD+ ++ EDL+I+T R+GG+GGQH NT
Sbjct: 182 SGVHRVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEDLKIETMRAGGAGGQHVNT 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQ 324
T+SAVR+TH+PTG+ + QDERSQ
Sbjct: 242 TDSAVRITHLPTGIVVQCQDERSQ 265
>gi|365873556|ref|ZP_09413089.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
gi|363983643|gb|EHM09850.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
Length = 357
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE A +E + PE S E +K +L + E + K ++ K L+
Sbjct: 10 IEAALAEIEARMADPEVSNNVQEMQSLSKRHSELYPVVQAFKEYQRASKALEEAKELM-- 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
ED+DM +A EE+ + L+ L LLP+D D +D I+E+RAG GG+EA+LF
Sbjct: 68 SQEDEDMRALAREEVQRLSERLPELEQELKVLLLPRDPNDHKDVIIEIRAGAGGDEAALF 127
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++++GW++E++ + E+ + GYKE + G G Y KLKFESG+HRVQR+
Sbjct: 128 AADLFRMYTRYTERQGWRYEIMEMNETGIGGYKEVVFLVKGDGAYSKLKFESGVHRVQRI 187
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGR+HTS +VA+LP+A++VDV++R EDL+IDTYR+ G+GGQ+ N T+SAVR+TH
Sbjct: 188 PATEASGRIHTSTATVAVLPEAEDVDVQVRPEDLKIDTYRASGAGGQYVNMTDSAVRITH 247
Query: 310 IPTGMTISIQDERSQ 324
IPTG+ ++ QDERSQ
Sbjct: 248 IPTGLVVTCQDERSQ 262
>gi|365879438|ref|ZP_09418861.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
gi|365292622|emb|CCD91392.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
Length = 361
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 159/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAEAERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|238756935|ref|ZP_04618123.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236]
gi|238704765|gb|EEP97294.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236]
Length = 360
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D H E R+ Q +ID + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTHCFKEWRSMQDDIDAAEMML----EDPEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ ++
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVYGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|365887823|ref|ZP_09426640.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
gi|365336576|emb|CCD99171.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
Length = 361
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 159/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAEAERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRVALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFAALQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEVE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|146306094|ref|YP_001186559.1| peptide chain release factor 1 [Pseudomonas mendocina ymp]
gi|166223589|sp|A4XR61.1|RF1_PSEMY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145574295|gb|ABP83827.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
mendocina ymp]
Length = 360
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 161/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ E D D+ +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKES--DPDLREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++F+ D+F+MY RY++K+GW+ EV+
Sbjct: 92 TTLEDKLQRMLLPKDPNDGRNVYLEVRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 212 DEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|421504253|ref|ZP_15951196.1| peptide chain release factor 1 [Pseudomonas mendocina DLHK]
gi|400345023|gb|EJO93390.1| peptide chain release factor 1 [Pseudomonas mendocina DLHK]
Length = 360
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 161/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ E D D+ +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKES--DPDLREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++F+ D+F+MY RY++K+GW+ EV+
Sbjct: 92 TTLEDKLQRMLLPKDPNDGRNVYLEVRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 212 DEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|149185458|ref|ZP_01863774.1| protein chain release factor A [Erythrobacter sp. SD-21]
gi|148830678|gb|EDL49113.1| protein chain release factor A [Erythrobacter sp. SD-21]
Length = 355
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 184/271 (67%), Gaps = 10/271 (3%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
++I +R+ I R A LE + E+ +A+++ +L + +E++ ++EI
Sbjct: 1 MQIPAERLDQIAHRFAELEARMASGTLEGDEFVQASRDYAELEPVAKVAAEVKAAREEIA 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVR 178
L+ ++ D +M MA EEL + +KRL + L ++LP+D AD + +LE+R
Sbjct: 61 SLEDMLA----DPEMKAMAEEELA---ELQKRLPAAERQLAIAMLPRDSADNKPAMLEIR 113
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LFA D+F+MYERY+ + GWK E V + S++ G+KE A+++G V+ KLK
Sbjct: 114 AGTGGDEAALFAGDLFRMYERYAAEMGWKVEPVSMNASEVGGFKEIVASVTGPNVFAKLK 173
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+ DEVDV+L +L+IDTYR+ G+GGQH
Sbjct: 174 FESGVHRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQLDPTELKIDTYRASGAGGQHV 233
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT+SA+R+TH+PTG ++ QD RSQH K+
Sbjct: 234 NTTDSAIRITHLPTGTVVTCQDGRSQHKNKE 264
>gi|206901386|ref|YP_002250520.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
gi|226739102|sp|B5YDB2.1|RF1_DICT6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|206740489|gb|ACI19547.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
Length = 367
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 180/267 (67%), Gaps = 3/267 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQK 118
L K++ ++ IE+R +ENL+ + E + + Y KE K+ + + SE + K
Sbjct: 2 LQKLVLDKLEEIEKRFKEIENLLTKEEIISDLSRYQSLLKERAKIEEIVEKFSEYKKLLK 61
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E + L+ + E +D+D+ +A EL + ++++ L LLPKD DE++ I+E+R
Sbjct: 62 EREDLEVMTKE-EQDEDLRSLAEAELEEIEKKLEKIEFDLKALLLPKDPNDEKNIIMEIR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA D+F+MY Y+QKKGWK E+V + L GYKE + G G Y +LK
Sbjct: 121 AGTGGEEAALFAADLFRMYVGYAQKKGWKVEIVSSNPTGLGGYKEIIFIVEGKGAYSRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE SGR+HTS +VA+LP+ +EVDV + +DLRI+T+RSGG+GGQH
Sbjct: 181 FESGVHRVQRVPITESSGRIHTSTATVAVLPEMEEVDVEIDPKDLRIETFRSGGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
N T S VR+THIP+G+ + QDERSQH
Sbjct: 241 NKTESGVRITHIPSGIVVQCQDERSQH 267
>gi|225849764|ref|YP_002729998.1| peptide chain release factor 1 [Persephonella marina EX-H1]
gi|254790894|sp|C0QTI3.1|RF1_PERMH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|225646004|gb|ACO04190.1| peptide chain release factor 1 [Persephonella marina EX-H1]
Length = 361
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 181/269 (67%), Gaps = 10/269 (3%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEA-----SPAEYSKANKELRKLRDSMHLISELRT 115
L K + Q++ I+ + LE ++ PE + +K +KE KL L E +
Sbjct: 2 LNKYLLQKLENIDEKLKKLEAALSDPEVLKDQKKLQQVAKEHKETEKLS---KLYKEYKK 58
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
K+I+ KSL+ + D++M +A EEL ++ L+ + LLPKD DE++ IL
Sbjct: 59 VLKDIEETKSLL--NNPDEEMRLLAEEELKNLNQRKEELEKEIQIELLPKDPNDEKNVIL 116
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+R G GGEEA+LFA ++F+MY+RY+++KGWK EV+ + +D G KE A I G G Y
Sbjct: 117 EIRQGAGGEEAALFAGELFRMYQRYAERKGWKVEVLSMHPTDRGGIKEVIALIKGQGAYS 176
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGG 295
+LKFESG+HRVQRVP TE SGR+HTS +VA+LP+A+EVD+ ++ E+L+I+T R+ G+GG
Sbjct: 177 RLKFESGVHRVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEELKIETMRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQ 324
QH NTT+SAVR+THIPTG+ +S QDERSQ
Sbjct: 237 QHVNTTDSAVRITHIPTGIVVSCQDERSQ 265
>gi|168203426|gb|ACA21561.1| protein release factor class I [Candidatus Pelagibacter ubique]
Length = 356
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 157/207 (75%), Gaps = 2/207 (0%)
Query: 123 LKSLIYECSEDKDMLDMATEELC-LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
LK ++ + + D+++L MA E+ L I EK + L L LLP+D+AD+++ I+E+RAGT
Sbjct: 61 LKKILEDQNSDEELLKMAETEIKDLQIQFEKNEKKLKL-FLLPRDEADKKNAIIEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG EASLFA D+FKMYE+ S KK W E++ +++S+ G KE A+I G +Y LK+ES
Sbjct: 120 GGLEASLFAGDLFKMYEKVSHKKKWLVEIISISKSEAGGLKEVIASIKGTNIYSTLKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ + DLRID +R+GG GGQ NTT
Sbjct: 180 GVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINDSDLRIDVFRAGGPGGQSVNTT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+THIPTG+++S QDE+SQH K
Sbjct: 240 DSAVRITHIPTGLSVSQQDEKSQHKNK 266
>gi|291288202|ref|YP_003505018.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM
12809]
gi|290885362|gb|ADD69062.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM
12809]
Length = 356
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 121/237 (51%), Positives = 166/237 (70%), Gaps = 11/237 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ K KE +L+ + E +++ +D S+I + S+DKD++++A EL EEK
Sbjct: 31 FQKTAKEHAELKPVVERYEEYLAEKEAVDEAHSII-KTSDDKDLVELAEMEL-----EEK 84
Query: 153 R-----LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ L KSLL KD D+++ LE+RAGTGG+EASLFA D+ KMY +Y++ GWK
Sbjct: 85 KGVLDELEDELKKSLLTKDPYDDKNIFLEIRAGTGGDEASLFAGDLLKMYTKYAEMNGWK 144
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
EVV E+ + GYKE A + G G Y KLKFE+G HRVQRVP TE GR+HTSA +VA+
Sbjct: 145 VEVVDFNETGVGGYKEVVALVKGHGAYSKLKFEAGGHRVQRVPETESGGRIHTSACTVAV 204
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
LP+A++VDV + +DLRID +R+ G+GGQH NTT+SAVR+THIPTG+ +S QDERSQ
Sbjct: 205 LPEAEDVDVHIEQKDLRIDVFRASGAGGQHVNTTDSAVRMTHIPTGVVVSCQDERSQ 261
>gi|333998861|ref|YP_004531473.1| peptide chain release factor 1 [Treponema primitia ZAS-2]
gi|333740985|gb|AEF86475.1| peptide chain release factor 1 [Treponema primitia ZAS-2]
Length = 361
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 182/274 (66%), Gaps = 27/274 (9%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT------KQK 118
M +R+ ++ RR + L+ PE ++ +K RD+M S+L + +
Sbjct: 1 MNERLESLLRRHEEVSRLIQDPELV--------RDQKKYRDTMKEYSQLEALASTQRETE 52
Query: 119 EIDG----LKSLIYECSEDKDMLDMATEEL----CLAIDEEKRLQSLLLKSLLPKDDADE 170
EI G KSL + +D +M +MA EEL D E RL+ LL+ P+D DE
Sbjct: 53 EISGQLEDAKSL-SQNEKDPEMREMAKEELRELETRLKDAEDRLKFLLI----PRDPLDE 107
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
++ I+E+RAGTGG+EA+LFA D+++MY R+++ +GWKFE++ E++L G+KE +I+G
Sbjct: 108 KNIIMEIRAGTGGDEAALFASDLYRMYARFAETRGWKFEIMSSNETELGGFKEIVFSITG 167
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
VY L++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ +R EDLRID R+
Sbjct: 168 NNVYENLRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIRQEDLRIDVMRA 227
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
GG GGQ NTT+SAVR+THIPTG+ + QDE+SQ
Sbjct: 228 GGPGGQCVNTTDSAVRITHIPTGVVVHCQDEKSQ 261
>gi|146337703|ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
gi|146190509|emb|CAL74508.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
Length = 361
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 159/233 (68%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +EL +L + + R KE+ ++LI + D +M MA E +
Sbjct: 32 YVQITRELAELNPLIDAVKAYRAGVKELADTEALIADPDTDAEMRAMAESERDELVARRG 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + +LLPKD D+R+ +LE+RAGTGG+EASLFA D+F+MYER++ +GWK EV+
Sbjct: 92 ELEQKIRIALLPKDAMDDRNVVLEIRAGTGGDEASLFAGDLFRMYERFASLQGWKVEVIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ +
Sbjct: 152 ASEGTVGGYKEIIAEVQGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPEIE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VDV ++ +DLRI+T R+ G+GGQH N T SA+R+THIPTG+ + +QD RSQH
Sbjct: 212 DVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHIPTGIVVMMQDSRSQH 264
>gi|115522190|ref|YP_779101.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisA53]
gi|122298096|sp|Q07VB3.1|RF1_RHOP5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|115516137|gb|ABJ04121.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisA53]
Length = 359
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 164/251 (65%), Gaps = 1/251 (0%)
Query: 75 RSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK 134
R A LE + P S Y K +EL +L + + R + EI + SLI + D
Sbjct: 15 RHAALEAQLLGPVNSE-HYVKITRELAELNPLVDAVKAYRQVRDEIGDIDSLIADPDSDP 73
Query: 135 DMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVF 194
++ MA E + E L + +LLPKD D+R+ +LEVRAGTGG+EASLFA D+F
Sbjct: 74 ELRAMAQAEHAALEEHEAELAQQIRIALLPKDAMDDRNVMLEVRAGTGGDEASLFAGDLF 133
Query: 195 KMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEK 254
+MYE+++ +GW EV+ +E G+KE A + G G + KLKFESG+HRVQRVP TE
Sbjct: 134 RMYEKFAALQGWSVEVISASEGAAGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTET 193
Query: 255 SGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGM 314
GR+HTSA +VA++P+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+
Sbjct: 194 QGRIHTSAATVAVMPEVEEVDVEIKQDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGI 253
Query: 315 TISIQDERSQH 325
+ +QD RSQH
Sbjct: 254 VVMMQDSRSQH 264
>gi|323136601|ref|ZP_08071682.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
gi|322397918|gb|EFY00439.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
Length = 356
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 165/232 (71%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E L D + I R Q+E+D L +++ + S D +M +A E A ++ + +
Sbjct: 34 SRERATLDDVVDAIRAWRDAQREVDDLAAMLADSSLDPEMRALAESETDGAREKLEAAAN 93
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LLPKD+ADE+ ILEVRAGTGG+EA+LFA D+F+ Y++Y+ KGW+ E+V +
Sbjct: 94 TLRLALLPKDEADEKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVELVSESPG 153
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
L G+KE A I G GVYG+LKFESG+HRVQRVP TE GR+HTSA +VA+LPQA++VD+
Sbjct: 154 ALGGFKEIVAEIIGRGVYGRLKFESGVHRVQRVPETETQGRIHTSAATVAVLPQAEDVDI 213
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ +DL+IDT R+ G+GGQH N T SA+R+THIP+G+ + +Q+ERSQH K
Sbjct: 214 DIDEKDLQIDTMRAQGAGGQHVNKTESAIRITHIPSGIVVMMQEERSQHRNK 265
>gi|325294472|ref|YP_004280986.1| peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064920|gb|ADY72927.1| Peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 361
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 103/165 (62%), Positives = 136/165 (82%)
Query: 160 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLR 219
K L+PKD DE++ ILE+RAGTGGEEA+LFA D+F+MY RY++KKGWK E++ + E+ L
Sbjct: 101 KLLIPKDPNDEKNVILEIRAGTGGEEAALFAQDLFRMYTRYAEKKGWKVEILSLNETGLG 160
Query: 220 GYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLR 279
G KE A ISG G Y +LK+ESG+HRVQR+P+TE GR+HTSA +VAILP+A+EVD+ +
Sbjct: 161 GIKEVIATISGKGAYSRLKYESGVHRVQRIPVTESGGRIHTSAATVAILPEAEEVDIHID 220
Query: 280 NEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
+DL+IDTYRS G+GGQH NTT+SAVR+THIPTG+ ++ +ERSQ
Sbjct: 221 EKDLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCSNERSQ 265
>gi|148359876|ref|YP_001251083.1| peptide chain release factor 1 [Legionella pneumophila str. Corby]
gi|296107926|ref|YP_003619627.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy]
gi|166223567|sp|A5IED7.1|RF1_LEGPC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148281649|gb|ABQ55737.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila str.
Corby]
gi|295649828|gb|ADG25675.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy]
Length = 362
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 160/239 (66%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A ++ +KE +L + +D L L+ S+DKD+ MA EE+ +
Sbjct: 30 ADQNQFKSLSKEYAQLEPVSQCYESYLEAKNNLDSLNELLE--SDDKDLATMAEEEIDIV 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L L L+PKD DER+ LEVRAGTGG+EA++FA D+F+MY RY++ +GW+
Sbjct: 88 KKQIEELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ + + GYKE A ISG VY +LKFESG HRVQRVP TE GRVHTSA +VAI
Sbjct: 148 IELISASHGEHGGYKEIIAKISGQAVYSQLKFESGAHRVQRVPETESQGRVHTSACTVAI 207
Query: 268 LPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+P+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 208 MPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
>gi|338708566|ref|YP_004662767.1| peptide chain release factor 1 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295370|gb|AEI38477.1| peptide chain release factor 1 [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 358
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 179/271 (66%), Gaps = 8/271 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R L+ + +P+ + ++E ++ + ++E
Sbjct: 1 MIAISPDRLAAIVARREELQAEMARPDLDSSRLVALSREYAEVEPVALAAQHVSALREET 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+ L+S+ + ED ++ MA EEL A+ + +R +L SLLP+D ADER ILE+
Sbjct: 61 EMLESMTRD--EDPELQAMAVEELSDKKQALSDAERALAL---SLLPRDAADERSAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA+LF D+ +MY RY++ GW+ E++ + ++L GYKE +I+G GV+ +L
Sbjct: 116 RAGTGGDEAALFGGDLLRMYSRYAEDHGWRVELISASAAELGGYKEVVISITGAGVFARL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP+TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ
Sbjct: 176 KFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAIDERDLRIDIFRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
NTT+SAVR+THIP+G+ +S QDE+SQH K
Sbjct: 236 VNTTDSAVRITHIPSGIVVSQQDEKSQHKNK 266
>gi|182677881|ref|YP_001832027.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|238691232|sp|B2IHL7.1|RF1_BEII9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|182633764|gb|ACB94538.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 358
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 176/279 (63%), Gaps = 26/279 (9%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT 115
ML D + ++ +R I R L P+A A + ++EL L + I R
Sbjct: 1 MLPQDKLDLILRRHEEISAR------LTENPDA--ATFVSLSRELAGLDEVAQAIRAYRD 52
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAI------DEEKRLQSL---LLKSLLPKD 166
+ EI G++++ + D ATE LA+ D +RL + L +LLPKD
Sbjct: 53 EMTEISGMEAM---------LADPATEPELLALAEEELQDARQRLGAFEQHLRIALLPKD 103
Query: 167 DADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226
DE+ ILE+RAGTGG+EA+LFA D+F+MY+RY++ KGW E++ V+E GYKE A
Sbjct: 104 ADDEKSAILEIRAGTGGDEAALFAGDLFRMYQRYAEAKGWGVEILSVSEGTAGGYKEIVA 163
Query: 227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID 286
I+G GV+ KLKFESG HRVQRVP TE GR+HTSA +VA+LPQA+EVDV + DL+ID
Sbjct: 164 EITGKGVFAKLKFESGTHRVQRVPDTETQGRIHTSAATVAVLPQAEEVDVEINEADLKID 223
Query: 287 TYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
T R+ G+GGQH N T SA+R+TH+PTG I +QDERSQH
Sbjct: 224 TMRAQGAGGQHVNKTESAIRITHLPTGTVIFVQDERSQH 262
>gi|374294759|ref|YP_005044950.1| peptide chain release factor 1 (bRF-1) [Clostridium clariflavum DSM
19732]
gi|359824253|gb|AEV67026.1| bacterial peptide chain release factor 1 (bRF-1) [Clostridium
clariflavum DSM 19732]
Length = 360
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 177/267 (66%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P + EY K KE +L++ ++ E + K+I
Sbjct: 1 MFDKLQAAENRYEEINHKLSDPTVIENQDEYRKLMKEHAELQELVNKYGEYKKLTKDIAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ E DKD DM EL A + +R++ + LLPKD DE++ I+E+R G G
Sbjct: 61 AKELLNE-KLDKDFRDMVELELKEAEESLERIKKEIKILLLPKDPNDEKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+F+MY +Y++K GWK E++ +++ G+KE AI G G Y KLKFESG
Sbjct: 120 GDEASLFAGDLFRMYTKYAEKCGWKTEILDSNPNEIGGFKEVIFAIEGNGAYSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE +GR+HTS V+VA+LP+ +EVDV + DL+IDT+R+ G+GGQH N T
Sbjct: 180 VHRVQRIPETEANGRIHTSTVTVAVLPEVEEVDVEINPNDLKIDTFRASGAGGQHINKTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+THIPTG+ ++ QD+RSQH KD
Sbjct: 240 SAIRITHIPTGIVVTCQDQRSQHKNKD 266
>gi|325186400|emb|CCA20906.1| peptide chain release factor 1 putative [Albugo laibachii Nc14]
Length = 397
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 121/263 (46%), Positives = 177/263 (67%), Gaps = 7/263 (2%)
Query: 70 LAIERRSACLENLVNQPEASPAEYSKANK--ELRKLRDSMHLISELRTKQKEIDGLKSLI 127
L +ER + E L + P+ + + N EL +L + I +L++ + ID L ++
Sbjct: 42 LLLERHKSLSEQLYS-PQGKMSSFVLKNLSIELAELTPKVTTIQKLQSTLQTIDELSEIL 100
Query: 128 YECS--EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
S DK+++ +A EEL A ++ L+ L + LLP+D AD+++CILE+RAGTGGEE
Sbjct: 101 ASPSSQNDKELIQLAKEELQEAKEDAIALEKSLTRQLLPRDPADDKNCILEIRAGTGGEE 160
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A LFA D+ K+Y++ + + W F+++ ++ +DL G KE I G GVYG+ KFESG+HR
Sbjct: 161 ACLFANDLLKLYQKIAIMRNWHFQILSISHTDLGGCKECVCTIQGRGVYGQTKFESGVHR 220
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+ + RVHTSAVSV +LP+ +E+++ L ++LRID YR+ GSGGQH NTT SAV
Sbjct: 221 VQRVPINDV--RVHTSAVSVVVLPEIEEIEMELNPKELRIDVYRASGSGGQHVNTTESAV 278
Query: 306 RVTHIPTGMTISIQDERSQHMVK 328
R+THIPTG+ ++QDERSQH K
Sbjct: 279 RITHIPTGIQAAVQDERSQHQNK 301
>gi|192360464|ref|YP_001981172.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107]
gi|238692456|sp|B3PJP4.1|RF1_CELJU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|190686629|gb|ACE84307.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107]
Length = 360
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 117/210 (55%), Positives = 155/210 (73%), Gaps = 7/210 (3%)
Query: 119 EIDGLKSLIYECSEDKDMLDMATEEL--CLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+I+ K LI E D DM +MA EEL C A E L+ L K LLPKD DE++C LE
Sbjct: 61 DIEEAKHLIAEG--DADMREMAEEELEGCEARLEPTELE--LQKLLLPKDPNDEKNCYLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
VRAGTGG+EA++F+ D+F+MY RY++ +GW+ E++ +E + G+KE + +SG GVY K
Sbjct: 117 VRAGTGGDEAAIFSGDLFRMYSRYAETQGWRVEILSQSEGEHGGFKEIISLVSGSGVYSK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA++P+ADE+ +V + DLRIDTYR+ G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVMPEADELEEVNINKADLRIDTYRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 237 QHVNKTDSAIRITHIPTGIVVECQDERSQH 266
>gi|194290876|ref|YP_002006783.1| peptide chain release factor 1 [Cupriavidus taiwanensis LMG 19424]
gi|238692779|sp|B3R722.1|RF1_CUPTR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|193224711|emb|CAQ70722.1| peptide chain release factor RF-1 [Cupriavidus taiwanensis LMG
19424]
Length = 360
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 167/239 (69%), Gaps = 5/239 (2%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L S+ R Q ++ ++L+ +D +M D A +E+ A D
Sbjct: 34 QYRKLSREHAELSPVAEQYSQYRQAQDDLATAQALL----DDPEMKDFAADEIAAARDRL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ LQ+ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 90 EALQASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAADLLRMYTRYAERQRWQVEVM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIIRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH KD
Sbjct: 210 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKD 268
>gi|125975076|ref|YP_001038986.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|256003270|ref|ZP_05428262.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281418506|ref|ZP_06249525.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|385777561|ref|YP_005686726.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|419722892|ref|ZP_14250029.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
gi|419726392|ref|ZP_14253415.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|166223552|sp|A3DIL4.1|RF1_CLOTH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|125715301|gb|ABN53793.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|255992961|gb|EEU03051.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281407590|gb|EFB37849.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|316939241|gb|ADU73275.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|380770444|gb|EIC04341.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|380781272|gb|EIC10933.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
Length = 360
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 178/267 (66%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P A+ EY K KE +L + +E + KEI
Sbjct: 1 MFEKFQAAENRYDEINHRLSDPAVIANQDEYKKLMKEHAELEVLVTKYNEYKKLTKEIAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E DK+ +M EL A ++ + L+ + LLPKD DER+ I+E+R G G
Sbjct: 61 AKEMLNE-KLDKEFREMVETELKEAQEKLEVLKKEMKILLLPKDPNDERNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY+++ GWK E++ +++ G+KE +I G G Y +LKFESG
Sbjct: 120 GDEAALFAGDLFRMYTRYAERNGWKTEILDSNPTEIGGFKEVVFSIEGNGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE +GRVHTS V+VA+LP+A+E+DV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPVTEANGRVHTSTVTVAVLPEAEEIDVEINPNDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+TH+PTG+ + QD+RSQH K+
Sbjct: 240 SAIRITHLPTGLVVCCQDQRSQHKNKE 266
>gi|237793457|ref|YP_002861009.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657]
gi|259585216|sp|C3KYH5.1|RF1_CLOB6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229260673|gb|ACQ51706.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657]
Length = 358
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DKD+ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKDLREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|170742857|ref|YP_001771512.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
gi|226739116|sp|B0UAV4.1|RF1_METS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|168197131|gb|ACA19078.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
Length = 359
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 169/265 (63%), Gaps = 2/265 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R + ++ EA + + ++EL L D + I R + E+
Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAAEAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++++ E D +M +A EE L LLPKD ADE+ ILE+RAG
Sbjct: 61 RGVEAMLQEG--DPEMRALAAEEKPEVEAARDAAAKALQIMLLPKDAADEKSAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+ +MY RY+ KGWK EVV + + GY+E A + G GV+ +LKFE
Sbjct: 119 TGGDEAALFAGDLLRMYARYADLKGWKIEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DL+IDT R+ G+GGQH N
Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T SA+R+THIP+G+ + +Q+ERSQH
Sbjct: 239 TESAIRITHIPSGIVVFVQEERSQH 263
>gi|220920161|ref|YP_002495462.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
gi|254790889|sp|B8IUB4.1|RF1_METNO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219944767|gb|ACL55159.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
Length = 359
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 169/265 (63%), Gaps = 2/265 (0%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
+I I R+ AI R + ++ EA + + ++EL L D + I R E+
Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAADAEL 60
Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
G+++++ E D +M +A EE L LLPKD ADE+ ILE+RAG
Sbjct: 61 RGVEAMLEEG--DPEMRALAAEEKPEVEAARDAAAKALQILLLPKDSADEKSAILEIRAG 118
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY RY+ KGWK EVV + + GY+E A + G GV+ +LKFE
Sbjct: 119 TGGDEAALFAGDLFRMYARYADLKGWKVEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DL+IDT R+ G+GGQH N
Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T SA+R+TH+P+G+ + +Q+ERSQH
Sbjct: 239 TESAIRITHMPSGIVVFVQEERSQH 263
>gi|134301001|ref|YP_001114497.1| peptide chain release factor 1 [Desulfotomaculum reducens MI-1]
gi|134053701|gb|ABO51672.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfotomaculum
reducens MI-1]
Length = 356
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 180/269 (66%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E R LE+ ++ PE A A++ + K L + + + + + ++++
Sbjct: 1 MYDKLQALEDRFEQLESQISDPEVMADRAKWQQLVKSHSDLAEVVDVFRQYKKAKEDLQE 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
K ++ + E ++M+++ EEL I+E++ +LL LPKD D+++ I+E+R G
Sbjct: 61 NKQMLEDKLEPDFREMVELEIEELTSKIEEQENKLKILL---LPKDPNDDKNVIMEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA+LFA D+F+MY RY++KKGW+ E++ E+DL G+KE + I G G + LKFE
Sbjct: 118 TGGDEAALFAGDLFRMYSRYAEKKGWRTEIIDANETDLGGFKEVTFVIEGKGAFSTLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D+RID + + G GGQ NT
Sbjct: 178 SGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIDINANDIRIDLFCASGPGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+THIPTG +S QDE+SQH KD
Sbjct: 238 TQSAVRITHIPTGTVVSCQDEKSQHKNKD 266
>gi|399064447|ref|ZP_10747386.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
gi|398030691|gb|EJL24096.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
Length = 356
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 165/233 (70%), Gaps = 3/233 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ A+++ +L + +++ + + E++ L+ L D +M +A EE+ E
Sbjct: 32 FVAASRDYAELEPVARVAADVASMRGELEVLQKL---EDPDPEMRALAAEEVQRLKTELP 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L S+LP+D AD R +LE+RAGTGG+EA+LFA D+++MYERY+ ++GW+ E+V
Sbjct: 89 EAERRLAVSMLPRDAADVRPAMLEIRAGTGGDEAALFAADLYRMYERYAAEQGWRVEMVS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
SD+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+
Sbjct: 149 ANASDVGGFKEVVANVTGSGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPT 208
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
EVDV++ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+PT + + QDERSQH
Sbjct: 209 EVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPTNLVVICQDERSQH 261
>gi|397690016|ref|YP_006527270.1| peptide chain release factor 1 [Melioribacter roseus P3M]
gi|395811508|gb|AFN74257.1| peptide chain release factor 1 [Melioribacter roseus P3M]
Length = 360
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 165/231 (71%), Gaps = 7/231 (3%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE R+L + + SE KEI+G K +I E S DK++++ A EL D K+L+
Sbjct: 37 SKERRELEEIVAAFSEYEKVLKEINGNKEII-ETSSDKELVEFAEVELK---DLSKKLEE 92
Query: 157 LLLKS---LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L K L+PKD D++D I+E+RAGTGGEEA LFA D+++MY RY++K+GW+ E++ +
Sbjct: 93 LEEKIKVLLIPKDPNDDKDVIVEIRAGTGGEEAGLFAADLYRMYSRYAEKRGWQKELIDI 152
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+++ L G KE ++SG V+G +KFESG+HRVQRVP TE SGR+HTSA SV +LP+ ++
Sbjct: 153 SDTGLGGIKEVVFSLSGTNVFGDMKFESGVHRVQRVPETEASGRIHTSAASVVVLPEVED 212
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VDV + DLRID YRSGG+GGQ+ N +A+R+TH+PTG+ + QDERSQ
Sbjct: 213 VDVEIDPNDLRIDAYRSGGAGGQNVNKVETAIRITHLPTGLVVQCQDERSQ 263
>gi|328870409|gb|EGG18783.1| peptide chain release factor 1 [Dictyostelium fasciculatum]
Length = 530
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 179/262 (68%), Gaps = 4/262 (1%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V + E + L+ L+ +E K +KEL +LR+ ++ L K +E+ L+ ++
Sbjct: 174 KVYSNETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMV 233
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E +DK+ ++ ++L +++ K + L+ SLLP D DE + I+E+RAGTGG EA
Sbjct: 234 SEV-KDKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQ 292
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK---EASAAISGVGVYGKLKFESGIH 244
LFA+++ MYE Y+Q GWKFEV+ + +D G K +ASA+ISG GV+G LK ESG+H
Sbjct: 293 LFALEMLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVH 352
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P TE GRVHTS V+VAILP+ EVD+++R+ +LRID YRS G+GGQ NTT+SA
Sbjct: 353 RVQRIPETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSA 412
Query: 305 VRVTHIPTGMTISIQDERSQHM 326
VR+TH+PTG +++QDERSQ M
Sbjct: 413 VRITHLPTGTVVAMQDERSQLM 434
>gi|217967194|ref|YP_002352700.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
gi|226739103|sp|B8E003.1|RF1_DICTD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217336293|gb|ACK42086.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
Length = 367
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 180/267 (67%), Gaps = 3/267 (1%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQK 118
L K++ ++ IE+R +E L+ + + + +Y KE K+ + + E + K
Sbjct: 2 LQKLVIDKLEEIEKRFEEIEGLLAKEDVISDFNKYQSLLKERAKIEEIVDKFREYKRLLK 61
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E + L+ ++ E +D+D+ +A EL ++ ++++ L LLPKD DE++ I+E+R
Sbjct: 62 EKEDLEEMVKE-EQDEDLRSLAETELEDIQEKLEKVEFELKALLLPKDPNDEKNIIMEIR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGGEEA+LFA D+F+MY Y+QKKGWK E+V + L G+KE + G G Y +LK
Sbjct: 121 AGTGGEEAALFAADLFRMYLGYAQKKGWKVEIVSSNPTGLGGFKEIIFIVEGKGAYSRLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP+TE SGR+HTS +VA+LP+ +E++V + +DLRI+T+RSGG+GGQH
Sbjct: 181 FESGVHRVQRVPITESSGRIHTSTATVAVLPEMEEIEVEIDPKDLRIETFRSGGAGGQHV 240
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
N T S VR+THIP+G+ + QDERSQH
Sbjct: 241 NKTESGVRITHIPSGIVVQCQDERSQH 267
>gi|410943223|ref|ZP_11374964.1| peptide chain release factor 1 [Gluconobacter frateurii NBRC
101659]
Length = 353
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 177/259 (68%), Gaps = 7/259 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RSEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGAQAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + E K++ + EE+ I E L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LAD-PEMKELAQVELEEIEARIPE---LEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ ES++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAESEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQH 325
+THIPTG+ +++Q+E+SQH
Sbjct: 241 ITHIPTGVVVAMQEEKSQH 259
>gi|317486540|ref|ZP_07945363.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6]
gi|345887299|ref|ZP_08838489.1| peptide chain release factor 1 [Bilophila sp. 4_1_30]
gi|316922215|gb|EFV43478.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6]
gi|345041960|gb|EGW46078.1| peptide chain release factor 1 [Bilophila sp. 4_1_30]
Length = 356
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/266 (47%), Positives = 173/266 (65%), Gaps = 4/266 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ ++ER+ LE + P + Y K K L+ + + + R ++ +
Sbjct: 1 MFAKLESLERKFLDLEQELADPTVFNDQDRYRKLTKAHSDLKPVVDIFRQYRELKQNLAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + D D+ +MA EE+ ++ L+ L LLP D DE++ ILE+RAGTG
Sbjct: 61 NQELLNDA--DPDIREMAHEEIKSIEEKLPELEHDLKVLLLPTDPLDEKNIILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LF D+F+MY RY++K GWK E++ +ESD GYKE A ISG VY +LKFESG
Sbjct: 119 GEEAALFGGDLFRMYCRYAEKMGWKVEIMSQSESDNGGYKEVIALISGDKVYSRLKFESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VAI+P+A+EVD+ L+ EDLR D YRS G GGQ NTT+
Sbjct: 179 THRVQRVPATESQGRIHTSAATVAIMPEAEEVDLDLKPEDLRFDVYRSSGPGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVRVTHIPTG+ + QDE+SQH K
Sbjct: 239 SAVRVTHIPTGLVVCCQDEKSQHKNK 264
>gi|188996904|ref|YP_001931155.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931971|gb|ACD66601.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
Length = 360
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 182/256 (71%), Gaps = 3/256 (1%)
Query: 71 AIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
+IE + LE L+ PE ++ KE ++L + ++L +E + ++I+ +K L+
Sbjct: 11 SIEEKVKKLEELMADPEVLKDQSKIQSIAKEHKELSEILNLYNEYKKVSRQIEEVKQLLN 70
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D D+ ++A EEL +++ L+ + +LLPKD DE++ ILE+R G GG+EASL
Sbjct: 71 STPDD-DLRELAEEELESLKKQQEDLEKKIEIALLPKDPNDEKNVILEIRQGAGGDEASL 129
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA ++F+MY+RY+++ GWK E++ + ++ G KE A I G G Y +LK+ESG+HRVQR
Sbjct: 130 FAAELFRMYQRYAERHGWKTEILSLHPTEKGGIKEVIALIKGKGAYSRLKYESGVHRVQR 189
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE SGR+HTS V+VA+LP+A+EVD+ ++ E+L+I+T R+GG+GGQH NTT+SAVR+T
Sbjct: 190 VPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELKIETMRAGGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQ 324
HIPTGM ++ QDERSQ
Sbjct: 250 HIPTGMVVTCQDERSQ 265
>gi|398378025|ref|ZP_10536193.1| peptide chain release factor 1 [Rhizobium sp. AP16]
gi|397725796|gb|EJK86243.1| peptide chain release factor 1 [Rhizobium sp. AP16]
Length = 359
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 165/235 (70%), Gaps = 8/235 (3%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+EYS+ + K+RD I+E L++++ + S D++M D+A EL +
Sbjct: 37 SEYSELQPVVAKIRDYEKAIAE-------ASDLEAMLADKSVDREMRDLADMELPEVKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+ + LLPKD ADE+ ILE+RAGTGG EA+LF D+F+MYER++ GWK E+
Sbjct: 90 IELLEQDIQILLLPKDAADEKSAILEIRAGTGGSEAALFGGDLFRMYERFAANNGWKVEI 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + GYKE A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 LSASDGEAGGYKEVIATITGKGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 210 AEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|399519470|ref|ZP_10760265.1| peptide chain release factor 1 [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112566|emb|CCH36823.1| peptide chain release factor 1 [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 360
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 162/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + ELR Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 34 QFRAYSKEYAEIEPVIATFRELRKVQSDLEGAQALLKDS--DADMREMAEEEVAQAKEAL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ EV+
Sbjct: 92 VTLEDKLQRMLLPKDPNDGRNVYLEIRAGTGGDEAAIFSGDLFRMYSRYAERQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE V + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 212 DEQVAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|452752732|ref|ZP_21952473.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
gi|451960123|gb|EMD82538.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
Length = 363
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 184/266 (69%), Gaps = 8/266 (3%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
+ ++RV AI R + L + + + P ++ + +KE +L +R ++E+ L
Sbjct: 7 VPQERVDAIIGRHSDLTHQMASGDLPPEKFVELSKEYAELDPVASAAKSVRALREEVAEL 66
Query: 124 KSLIYECSEDKDMLDMATEELCLA----IDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
++ + + D DM ++A EL ++ E++L L+L PKD AD+R ILE+RA
Sbjct: 67 TAMAADSASDADMRELAETELAAVQKRLVEGERQLALLML----PKDVADQRSAILEIRA 122
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+++MY+RY++ +GW+ E + ++ +D G KE A +SG GV+ +LKF
Sbjct: 123 GTGGEEAALFAADLYRMYQRYAEGRGWRVETMEMSAADAGGIKEVIANVSGTGVFARLKF 182
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTSA +VA+LP+A++VD+ + + DLR+D +R+ G+GGQH N
Sbjct: 183 ESGVHRVQRVPATEASGRIHTSAATVAVLPEAEDVDIEINDSDLRVDVFRASGAGGQHVN 242
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVR+TH+P+G+ +S QDE+SQH
Sbjct: 243 TTDSAVRITHVPSGLVVSQQDEKSQH 268
>gi|222087303|ref|YP_002545840.1| peptide chain release factor 1 [Agrobacterium radiobacter K84]
gi|254790855|sp|B9JB75.1|RF1_AGRRK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|221724751|gb|ACM27907.1| peptide chain release factor 1 [Agrobacterium radiobacter K84]
Length = 359
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 165/235 (70%), Gaps = 8/235 (3%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+EYS+ + K+RD I+E L++++ + S D++M D+A EL +
Sbjct: 37 SEYSELQPVVAKIRDYEKAIAEASD-------LEAMLADKSVDREMRDLADMELPEVKER 89
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+ + LLPKD ADE+ ILE+RAGTGG EA+LF D+F+MYER++ GWK E+
Sbjct: 90 IEVLEQDIQILLLPKDAADEKSAILEIRAGTGGSEAALFGGDLFRMYERFAANNGWKVEI 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ ++ + GYKE A I+G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 LSASDGEAGGYKEVIATITGKGVFSRLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+E+D+ +R ED+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 210 AEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|390943057|ref|YP_006406818.1| peptide chain release factor 1 (bRF-1) [Belliella baltica DSM
15883]
gi|390416485|gb|AFL84063.1| bacterial peptide chain release factor 1 (bRF-1) [Belliella baltica
DSM 15883]
Length = 358
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 175/264 (66%), Gaps = 7/264 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A ++Y+K +KE + L + L+ E +D
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMSKYTKLSKEYKDLEKVVELLDEYSLV---LDN 57
Query: 123 LKSL--IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+KS I E +D D +MA EL D + +L+ L + L+PKD D +DCILE+R G
Sbjct: 58 IKSSKEILEKEKDPDFRNMAKAELDELKDRQIQLEEDLKQQLIPKDPNDSKDCILEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA++FA D+F+MY+R+ K+GWK V+ +T GYKE + I+G VYG +KFE
Sbjct: 118 TGGDEAAIFAGDLFRMYQRFCDKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP+TE GRVHTSA SVA+LP+ DEV+V + ++R DTY S G GGQ NT
Sbjct: 178 SGVHRVQRVPMTETQGRVHTSAASVAVLPEMDEVEVNIDMNEVRKDTYCSSGPGGQSVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQ 324
T SAVR+THIP+G+ ++ QDE+SQ
Sbjct: 238 TYSAVRLTHIPSGLVVTCQDEKSQ 261
>gi|52842546|ref|YP_096345.1| peptide chain release factor 1 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295177|ref|YP_127592.1| peptide chain release factor 1 [Legionella pneumophila str. Lens]
gi|54298226|ref|YP_124595.1| peptide chain release factor 1 [Legionella pneumophila str. Paris]
gi|378778233|ref|YP_005186672.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|397664775|ref|YP_006506313.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|397667997|ref|YP_006509534.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|61214584|sp|Q5WUB1.1|RF1_LEGPL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|61214585|sp|Q5X2V3.1|RF1_LEGPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|61214588|sp|Q5ZT29.1|RF1_LEGPH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52629657|gb|AAU28398.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53752011|emb|CAH13437.1| peptide chain release factor 1 [Legionella pneumophila str. Paris]
gi|53755009|emb|CAH16497.1| peptide chain release factor 1 [Legionella pneumophila str. Lens]
gi|307611181|emb|CBX00825.1| peptide chain release factor 1 [Legionella pneumophila 130b]
gi|364509049|gb|AEW52573.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|395128186|emb|CCD06391.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
gi|395131408|emb|CCD09676.1| peptide chain release factor RF-1 [Legionella pneumophila subsp.
pneumophila]
Length = 362
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A ++ +KE +L + +D L L+ S+DKD+ MA EE+
Sbjct: 30 ADQNQFKSLSKEYAQLEPVSQCYESYLEAKNNLDSLNELLE--SDDKDLATMAEEEIDTV 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ + L L L+PKD DER+ LEVRAGTGG+EA++FA D+F+MY RY++ +GW+
Sbjct: 88 KKQIEELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIFAGDLFRMYSRYAESQGWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ + + GYKE A ISG VY +LKFESG HRVQRVP TE GRVHTSA +VAI
Sbjct: 148 IELISASHGEHGGYKEIIAKISGQAVYSQLKFESGAHRVQRVPETESQGRVHTSACTVAI 207
Query: 268 LPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+P+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 208 MPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
>gi|291541665|emb|CBL14775.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus
bromii L2-63]
Length = 357
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 177/268 (66%), Gaps = 5/268 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTK-QKEID 121
M +++ ++R + L + QP +P EY K KE++ + + + + + Q E D
Sbjct: 1 MFEKIEIFDKRYSELSERLYQPSVAGNPEEYQKIMKEIKSIEEIVLTYRKYKEAVQTEKD 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ I E + DK++ ++A EL A D K L L LLPKD DER+ I+E+R G
Sbjct: 61 SLE--ILEETSDKELKELAQIELDEAKDNIKNLAEDLKILLLPKDPNDERNVIVEIRGGA 118
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GGEE++LF+ +F+MY Y++KKG+K E++ E+++ GYKE S I G G Y + K+ES
Sbjct: 119 GGEESALFSAVLFRMYSMYAEKKGFKIEIINANETEIGGYKEISFMIEGEGAYSRFKYES 178
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTS +VA+LP+A++V++ + DL+IDT+RS G+GGQH N T
Sbjct: 179 GVHRVQRVPETESQGRVHTSTTTVAVLPEAEDVELEIDPNDLKIDTFRSSGAGGQHINKT 238
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SA+R+TH+PTGM + QDERSQ+ KD
Sbjct: 239 SSAIRITHLPTGMVVECQDERSQYKNKD 266
>gi|301060315|ref|ZP_07201178.1| peptide chain release factor 1 [delta proteobacterium NaphS2]
gi|300445511|gb|EFK09413.1| peptide chain release factor 1 [delta proteobacterium NaphS2]
Length = 358
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/258 (47%), Positives = 170/258 (65%), Gaps = 4/258 (1%)
Query: 73 ERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC 130
E R LE + QPE + K KE L + ++ E + Q EI +SL+ +
Sbjct: 11 EERYRELETFLGQPEIIQDQKRFQKYAKEHSDLTPIITVLREHQALQDEIAESQSLLQDP 70
Query: 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D ++ +A EE+ D +R L LLPKD DE++ +LE+RAGTGGEEA+LFA
Sbjct: 71 --DPEIKKLAKEEIEGLNDRLERTADELTVLLLPKDPNDEKNILLEIRAGTGGEEAALFA 128
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY RY++ + WK E++ + + G+KE I G V+ +LK+ESG+HRVQRVP
Sbjct: 129 ADLFRMYSRYAELRRWKTEILSQNMTGIGGFKEVIVLIEGHRVFSRLKYESGVHRVQRVP 188
Query: 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSAV+VA+LP+A+EVDV ++ EDLRID YRS G GGQH NTT+SAVR+TH+
Sbjct: 189 ETEAQGRIHTSAVTVAVLPEAEEVDVEIKPEDLRIDVYRSSGHGGQHVNTTDSAVRITHL 248
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ ++ QDE+SQH K
Sbjct: 249 PTGLVVTCQDEKSQHKNK 266
>gi|68171785|ref|ZP_00545129.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa]
gi|67998796|gb|EAM85504.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa]
Length = 311
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 155/219 (70%)
Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
I + QK+I GL+ LI D ++ +A EE + +++ L SLLPKD D
Sbjct: 1 IDQYNILQKDIAGLEELINNPETDHELKSLAKEEFYERQKQLPKVKHKLKLSLLPKDKDD 60
Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
R+ ILE+RAGTGGEEA+LF D+++MY +Y+++K WKFE + + + + G+KE S IS
Sbjct: 61 ARNAILEIRAGTGGEEAALFVTDLYRMYTKYAEQKNWKFEQINSSSTGIGGHKEISLCIS 120
Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
G V+ +LKFESG+HRVQRVP TE SGR+HTSA +VA+LP+ +EVD+++ +DLRID YR
Sbjct: 121 GSNVFARLKFESGVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYR 180
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
S G GGQ NTT+SAVR+THIP+G+ + QDE+SQH K
Sbjct: 181 SSGPGGQSVNTTDSAVRITHIPSGIVVIQQDEKSQHKNK 219
>gi|348679174|gb|EGZ18991.1| hypothetical protein PHYSODRAFT_301424 [Phytophthora sojae]
Length = 325
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 169/234 (72%), Gaps = 7/234 (2%)
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLI--YECSEDKDMLD---MATEELCLAIDEEKRL 154
+ +L + + EL+++Q ++ L +I E S+D D ++ MA +E + RL
Sbjct: 1 MAELEPKVMAVRELQSQQNAVEELDEMIAEQEGSDDPDAVELRQMAKDERRELQESIARL 60
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
+ +++ +LP+D+AD++ ILE+RAGTGG+EA LFA D+ KMY++ + KGWKFE++ ++
Sbjct: 61 EGEVVRLMLPRDEADDKSSILEIRAGTGGDEACLFAADILKMYQKVALAKGWKFEIMSIS 120
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
E+DL G KE +++G G YG++KFESG+HRVQRVP+ + RVHTSAVSV +LP+A+EV
Sbjct: 121 ETDLGGCKECVCSLTGRGAYGRMKFESGVHRVQRVPVNDV--RVHTSAVSVVVLPEAEEV 178
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+V + +DLRID YR+ G+GGQH NTT SAVR+THIPTG+ ++QDERSQH K
Sbjct: 179 EVEIDPKDLRIDVYRASGAGGQHVNTTESAVRITHIPTGIVAAVQDERSQHQNK 232
>gi|282857117|ref|ZP_06266363.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
gi|282585052|gb|EFB90374.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
Length = 358
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 138/172 (80%)
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L +LLPKD DE+D I+E+RAGTGG+EASLFA D+F+MY RY++++GWK E+V
Sbjct: 91 KIEEQLRVALLPKDPNDEKDVIMEIRAGTGGDEASLFAADLFRMYSRYAEREGWKLEIVD 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E+++ GYKE I G GVY +LK+ESG+HRVQRVP TE GR+HTSA +V ++P AD
Sbjct: 151 ENETEVGGYKEIVLQIHGRGVYSQLKYESGVHRVQRVPATEAGGRIHTSAATVVVMPVAD 210
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
++D+ +R EDL+IDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ QDERSQ
Sbjct: 211 DIDIEIRPEDLKIDTYRSSGAGGQHVNMTDSAVRITHLPTGLVVTCQDERSQ 262
>gi|184153097|ref|YP_001841438.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|423335983|ref|ZP_17313734.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
gi|238058717|sp|B2G676.1|RF1_LACRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183224441|dbj|BAG24958.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|337729186|emb|CCC04310.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
Length = 360
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 178/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 7 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 67 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 126 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 186 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 245
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 246 RMTHLPTGIVVAMQDERSQQ 265
>gi|340779042|ref|ZP_08698985.1| peptide chain release factor 1 [Acetobacter aceti NBRC 14818]
Length = 352
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
++ R+ I RS LE L+ + ++++A++E ++ + I+ LR Q E LK
Sbjct: 3 LDDRLDRIVARSEELEALLASG-VTGEDFTRASREYGEIEPLVARINALRAVQAEEQDLK 61
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
L+ +D +M +A EL D LQ + ++LPKD ADER ILE+R GG+
Sbjct: 62 QLL----DDPEMKALAESELHEVKDRIGMLQQDVRLAMLPKDAADERSAILEIRPAAGGD 117
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA ++F Y RY+ +GWKFEV+ ES+L G +E A ISG GV+ +LK+ESG+H
Sbjct: 118 EAALFASELFGAYRRYADLRGWKFEVMEYDESELGGLREGIATISGKGVFARLKYESGVH 177
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTS ++VA+LP+A+EVDV++ +DLRID YR+ G+GGQH N T SA
Sbjct: 178 RVQRVPATESQGRIHTSTITVAVLPEAEEVDVQIDEKDLRIDVYRASGAGGQHVNKTESA 237
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+TH+PTG+ +++Q+E+SQH
Sbjct: 238 VRITHLPTGVVVAMQEEKSQH 258
>gi|261363763|ref|ZP_05976646.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996]
gi|288568341|gb|EFC89901.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996]
Length = 358
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 167/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
ATEE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|148543687|ref|YP_001271057.1| peptide chain release factor 1 [Lactobacillus reuteri DSM 20016]
gi|227363334|ref|ZP_03847463.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227544508|ref|ZP_03974557.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|325682058|ref|ZP_08161576.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|338204026|ref|YP_004650171.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
gi|148530721|gb|ABQ82720.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus
reuteri DSM 20016]
gi|227071641|gb|EEI09935.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227185531|gb|EEI65602.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|324978702|gb|EGC15651.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|336449266|gb|AEI57881.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
Length = 362
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 178/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|194468250|ref|ZP_03074236.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
gi|194453103|gb|EDX42001.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
Length = 362
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 178/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ ++ + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKFSKEEGSLRETVEKYNQYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E ++D D+ + EEL A +E+ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|23012458|ref|ZP_00052537.1| COG0216: Protein chain release factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 361
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 159/229 (69%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G+++LI E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIHAYRAAEANLAGIRALIDEPGGDPEMRALAAEEKPDAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVDV
Sbjct: 157 TVGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDV 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH
Sbjct: 217 VINEADLKIDTMRAQGAGGQHVNKTESAIRITHLPTGVVVFVQEERSQH 265
>gi|167041273|gb|ABZ06029.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine
microorganism HF4000_005D21]
gi|167045778|gb|ABZ10424.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine
bacterium HF4000_APKG3108]
Length = 358
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 151/209 (72%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+KE L+ +I + DKDM+++A EL +++ + +L LLP D+AD ++ ILE
Sbjct: 55 EKEKVELEKIIEDKKSDKDMIELAKNELIQLSKKKEENEKILKVYLLPNDEADSKNAILE 114
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG EA+LF D++KMYER K W FE++ +++S+ G+KE I G +Y
Sbjct: 115 IRAGTGGLEATLFVADLYKMYERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSF 174
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LKFESG+HRVQRVP TE GRVHTSA +VA+LP+A+EVDV++ +DLRID +RS G GGQ
Sbjct: 175 LKFESGVHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKINEKDLRIDVFRSSGPGGQ 234
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 235 SVNTTDSAVRITHLPTGIAVSQQDEKSQH 263
>gi|269138757|ref|YP_003295458.1| peptide chain release factor 1 [Edwardsiella tarda EIB202]
gi|387867437|ref|YP_005698906.1| Peptide chain release factor 1 [Edwardsiella tarda FL6-60]
gi|267984418|gb|ACY84247.1| peptide chain release factor 1 [Edwardsiella tarda EIB202]
gi|304558750|gb|ADM41414.1| Peptide chain release factor 1 [Edwardsiella tarda FL6-60]
Length = 360
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 163/241 (67%), Gaps = 13/241 (5%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA----I 148
+ ++E +L D H + R Q ++ + ++ +D +M +MA EE+ A
Sbjct: 35 FRALSREYAQLTDVSHCFLDWRQVQDDLATAEMML----DDPEMREMAQEEIKAARGRLA 90
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
D E+ LQ LLL PKD DERDC LEVRAGTGG+EA+LFA D+F+MY RY++ + W+
Sbjct: 91 DLEQHLQILLL----PKDPDDERDCFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRI 146
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +E + GYKE A +SG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++
Sbjct: 147 EIMSASEGEHGGYKEVIAKVSGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVM 206
Query: 269 PQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMV 327
P E ++ ++ DLRIDTYRS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH
Sbjct: 207 PAVPEAELPQINPADLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKN 266
Query: 328 K 328
K
Sbjct: 267 K 267
>gi|297181249|gb|ADI17443.1| protein chain release factor a [uncultured Rhodospirillales
bacterium HF0070_31K06]
Length = 357
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 185/264 (70%), Gaps = 1/264 (0%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ +ME R+ ++ R A L L+ + +Y+ +KE +L + EL++ ++E+
Sbjct: 1 MSVME-RLDSVISRHAELAALMASGDLDAGQYADYSKEYAELSPVVEKAQELKSLREELG 59
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
GL+ L+ + D +M ++A E D+ ++ L LLPKD ADE+ ILE+RAGT
Sbjct: 60 GLEELLADPETDSEMKELAEAERQELRDQVPDIEESLRILLLPKDAADEKSAILEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+ +MY+RY++ GW+ E + ++E++L G KEA+ +I+G GV+ +LKFES
Sbjct: 120 GGDEAALFASDLMRMYQRYAEMHGWRTEFLDLSETELGGVKEAALSIAGRGVFARLKFES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP T+ GR+HTSA +VA+LP+A+EVD+++ DLR+DTYR+ G+GGQH N T
Sbjct: 180 GVHRVQRVPTTDSGGRIHTSAATVAVLPEAEEVDIQIDTSDLRVDTYRASGAGGQHVNKT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SA+R+TH+PTG+ + QDE+SQH
Sbjct: 240 DSAIRITHLPTGIVVQCQDEKSQH 263
>gi|402820806|ref|ZP_10870370.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
gi|402510452|gb|EJW20717.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
Length = 355
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 181/260 (69%), Gaps = 3/260 (1%)
Query: 66 EQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
E R+ AI R+ L+ +N E P E+ +KE +L + +++ R EI+ LKS
Sbjct: 4 EDRLDAILARAESLQEKMNG-ELPPQEFVTLSKEYARLEPVVAAVTQYRKLIDEINDLKS 62
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+I D +M ++A EL ++ Q+ L LLPKD+AD+ + ILEVRAGTGG+E
Sbjct: 63 II--DGNDDEMKELAEAELPELEEKLPAAQNDLEIMLLPKDEADDMNVILEVRAGTGGDE 120
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA ++F+MY R+++ G+K E++G ++ ++ GYKE AAI G V+ +LKFESG+HR
Sbjct: 121 AALFAGNLFRMYCRHAELNGYKVEILGASDGEIGGYKEVVAAIRGDSVFARLKFESGVHR 180
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE SGR+HTSA +VA+LP+ +EVDV++ +DLR+D +R+ G GGQ NTT+SAV
Sbjct: 181 VQRVPETESSGRIHTSAATVAVLPEPEEVDVQIEEKDLRVDVFRASGPGGQSVNTTDSAV 240
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +S QDE+SQH
Sbjct: 241 RITHLPTGIVVSQQDEKSQH 260
>gi|387889182|ref|YP_006319480.1| peptide chain release factor 1 [Escherichia blattae DSM 4481]
gi|414593613|ref|ZP_11443256.1| peptide chain release factor 1 [Escherichia blattae NBRC 105725]
gi|386924015|gb|AFJ46969.1| peptide chain release factor 1 [Escherichia blattae DSM 4481]
gi|403195513|dbj|GAB80908.1| peptide chain release factor 1 [Escherichia blattae NBRC 105725]
Length = 360
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D + R Q++I+ +S++ +D +M +MA EEL A + +
Sbjct: 35 FRALSKEYAQLSDVARCFLQWRQNQEDIETAESML----DDPEMKEMAQEELQAARQQRE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L LLP+D DER+ +E+RAGTGG+EA+LFA D+F+MY RY++ + W+ EV+
Sbjct: 91 ALETELQVLLLPRDPDDERNAFVEIRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEVMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|95929013|ref|ZP_01311758.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684]
gi|95134914|gb|EAT16568.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684]
Length = 358
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 171/252 (67%), Gaps = 4/252 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+E L++ P + ++ + +E +L + + + R Q+EI+ + L+ + +D DM
Sbjct: 17 VEGLLSDPTVLSDQNKFRELTREHAELSEPVEVYRRYRQIQQEIEDNRELMRD--DDPDM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EEL DE + L L +LPKD D ++ ILE+RAGTGG+EA+LFA D+F+
Sbjct: 75 REMAREELPALEDECEHLAEKLTLLMLPKDPNDGKNIILEIRAGTGGDEAALFAGDLFRA 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++K WK E++ +ES + G+KE A ISG VY +LK+ESG HRVQRVP TE G
Sbjct: 135 YSRYAEKHRWKVEIMSSSESGVGGFKEVIAMISGENVYSRLKYESGTHRVQRVPETETQG 194
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTSA +VA+LP+A+EVD+ + DLRID YR+ G+GGQH N T SAVR+THIPTG+ +
Sbjct: 195 RIHTSACTVAVLPEAEEVDLEINPSDLRIDLYRASGAGGQHVNKTESAVRITHIPTGVVV 254
Query: 317 SIQDERSQHMVK 328
+ QDE+SQH K
Sbjct: 255 ACQDEKSQHKNK 266
>gi|218783033|ref|YP_002434351.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans
AK-01]
gi|226739100|sp|B8FEA2.1|RF1_DESAA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|218764417|gb|ACL06883.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans
AK-01]
Length = 355
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 180/267 (67%), Gaps = 6/267 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL- 123
M R+ +E+R +E+L++ P+ + K +R+ D ++ R ++ ++GL
Sbjct: 1 MLDRLEGVEQRFLEVESLLSDPKIV-GDQKVYQKYVREHADLSKVVEAYREYKQVLEGLE 59
Query: 124 --KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K L+ + D D+ D+A EE+ E+ RL+ L LLPKD D+++ ILE+RAGT
Sbjct: 60 ESKELLKDP--DPDIKDLAKEEIDRLDKEQVRLEDELKILLLPKDPNDDKNVILEIRAGT 117
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA LFA D+F+MY RY++ +GWK E + + + G KE +A I+G GVY KFES
Sbjct: 118 GGDEAGLFAADLFRMYSRYAETRGWKVETLSEHLTGVGGIKEIAAMITGQGVYSAFKFES 177
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G HRVQRVP+TE GR+HTSA +VA+LP+A+EVD+++ ++R+D YRS G+GGQH NTT
Sbjct: 178 GTHRVQRVPVTEAQGRIHTSACTVAVLPEAEEVDIQIDPSEIRVDVYRSQGAGGQHVNTT 237
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+TH+PTG+ ++ QDE+SQH K
Sbjct: 238 DSAVRLTHLPTGVVVTCQDEKSQHKNK 264
>gi|170761198|ref|YP_001785468.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch
Maree]
gi|238688740|sp|B1KSR1.1|RF1_CLOBM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|169408187|gb|ACA56598.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch
Maree]
Length = 358
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|148378145|ref|YP_001252686.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
3502]
gi|153932228|ref|YP_001382546.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
19397]
gi|153936703|ref|YP_001386098.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall]
gi|166223548|sp|A7FQG2.1|RF1_CLOB1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223549|sp|A5HY35.1|RF1_CLOBH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148287629|emb|CAL81694.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
3502]
gi|152928272|gb|ABS33772.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC
19397]
gi|152932617|gb|ABS38116.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall]
Length = 358
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|167842463|gb|ACA03159.1| RF1 [Dictyostelium fasciculatum]
Length = 515
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 179/262 (68%), Gaps = 4/262 (1%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
+V + E + L+ L+ +E K +KEL +LR+ ++ L K +E+ L+ ++
Sbjct: 159 KVYSNETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMV 218
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E +DK+ ++ ++L +++ K + L+ SLLP D DE + I+E+RAGTGG EA
Sbjct: 219 SEV-KDKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQ 277
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK---EASAAISGVGVYGKLKFESGIH 244
LFA+++ MYE Y+Q GWKFEV+ + +D G K +ASA+ISG GV+G LK ESG+H
Sbjct: 278 LFALEMLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVH 337
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQR+P TE GRVHTS V+VAILP+ EVD+++R+ +LRID YRS G+GGQ NTT+SA
Sbjct: 338 RVQRIPETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSA 397
Query: 305 VRVTHIPTGMTISIQDERSQHM 326
VR+TH+PTG +++QDERSQ M
Sbjct: 398 VRITHLPTGTVVAMQDERSQLM 419
>gi|410669049|ref|YP_006921420.1| peptide chain release factor 1 [Thermacetogenium phaeum DSM 12270]
gi|409106796|gb|AFV12921.1| peptide chain release factor 1 [Thermacetogenium phaeum DSM 12270]
Length = 363
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 168/238 (70%), Gaps = 4/238 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y+K + EL D + E + +EI+ KSL+ E S D ++ D+A EL ++
Sbjct: 33 QYAKRHAELT---DIVTAFREFKKTCQEIESTKSLLEE-SADAELRDLAEAELVELRKKK 88
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L LLP+D DE++ I+E+RAGTGGEEA+LFA D+F+MY Y++++GWK EV+
Sbjct: 89 ESLEEELKIMLLPRDPRDEKNVIVEIRAGTGGEEAALFAGDLFRMYSYYAEQQGWKVEVL 148
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+D+ G+KE +SG VY KLK+ESG+HRVQR+P+TE +GR+HTSA +VA+LP+A
Sbjct: 149 SSHATDMGGFKEIIFQVSGDHVYSKLKYESGVHRVQRIPVTESAGRIHTSAATVAVLPEA 208
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+EVDV + +DLRID + S G GGQ NTT SAVR+THIPTG+ ++ QDE+SQH K+
Sbjct: 209 EEVDVEINPQDLRIDIFCSSGPGGQSVNTTQSAVRITHIPTGIVVTCQDEKSQHKNKE 266
>gi|114704325|ref|ZP_01437233.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506]
gi|114539110|gb|EAU42230.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506]
Length = 359
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 164/233 (70%), Gaps = 1/233 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E L + + I E R + E+ +SL+ + D++M ++A E+ +
Sbjct: 32 YSKLAAEYASLEEVVAAIREFRALETELADAESLLDDPESDREMRNLAGVEVDDLRSRRE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD ADE+ ILE+RAGTGG EA LFA D+++MY+RY++ WK E++
Sbjct: 92 GLRGRIQILLLPKDSADEKGAILEIRAGTGGSEAGLFAGDLYRMYQRYAELNRWKVELLS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E ++ G+KE AAI G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGEVGGFKEVIAAIKGNGVFSRLKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++D+ +RNED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 212 DIDIDVRNEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|153939567|ref|YP_001389502.1| peptide chain release factor 1 [Clostridium botulinum F str.
Langeland]
gi|168182252|ref|ZP_02616916.1| peptide chain release factor 1 [Clostridium botulinum Bf]
gi|170755459|ref|YP_001779766.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra]
gi|384460586|ref|YP_005673181.1| peptide chain release factor 1 [Clostridium botulinum F str.
230613]
gi|387816368|ref|YP_005676712.1| peptide chain release factor 1 [Clostridium botulinum H04402 065]
gi|429247092|ref|ZP_19210368.1| peptide chain release factor 1 [Clostridium botulinum CFSAN001628]
gi|166223550|sp|A7G9P2.1|RF1_CLOBL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229576659|sp|B1IE21.1|RF1_CLOBK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|152935463|gb|ABS40961.1| peptide chain release factor 1 [Clostridium botulinum F str.
Langeland]
gi|169120671|gb|ACA44507.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra]
gi|182674565|gb|EDT86526.1| peptide chain release factor 1 [Clostridium botulinum Bf]
gi|295317603|gb|ADF97980.1| peptide chain release factor 1 [Clostridium botulinum F str.
230613]
gi|322804409|emb|CBZ01959.1| peptide chain release factor 1 [Clostridium botulinum H04402 065]
gi|428755945|gb|EKX78540.1| peptide chain release factor 1 [Clostridium botulinum CFSAN001628]
Length = 358
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|195953354|ref|YP_002121644.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1]
gi|229576658|sp|B4U955.1|RF1_HYDS0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|195932966|gb|ACG57666.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1]
Length = 356
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 164/236 (69%), Gaps = 12/236 (5%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL----CLAI 148
Y +K+L++L L + K+I+ K L+ +DKD+ ++A +EL +
Sbjct: 36 YKALSKDLKELSYIHELYKDYNKILKDIEDTKELL----KDKDLRELAEKELENLNTKLL 91
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
+EK L + L PKD D ++ ILE+RAG GGEEA+LFA D+ +MY+RY+++KGWKF
Sbjct: 92 QKEKEL----INVLTPKDANDSKNVILEIRAGAGGEEAALFAADLLRMYQRYAERKGWKF 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
++ ++ L GYKE +I G VY LK+ESG+HRVQRVP+TE GR+HTS ++VA+L
Sbjct: 148 NILEANKTGLGGYKEVIVSIEGKNVYSHLKYESGVHRVQRVPITESGGRIHTSTITVAVL 207
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
P+ADE DV + +DLRI+T+R+ G+GGQ+ NTT SAVR+THIPTG++IS QDERSQ
Sbjct: 208 PEADETDVVINPQDLRIETFRASGAGGQYVNTTESAVRITHIPTGISISCQDERSQ 263
>gi|163793919|ref|ZP_02187893.1| Protein chain release factor A [alpha proteobacterium BAL199]
gi|159181030|gb|EDP65547.1| Protein chain release factor A [alpha proteobacterium BAL199]
Length = 356
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/258 (49%), Positives = 182/258 (70%), Gaps = 8/258 (3%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127
R L +E R A + V +++ + +KEL +L + + LR + E+ ++L
Sbjct: 13 RALELEARLASPDGFVQ------SDFQRLSKELAELTPVVETVGLLRRTRAELADAQALA 66
Query: 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
E D +M ++A EE + L+ ++ LLP+D+AD R+ ILEVRAGTGG+EA+
Sbjct: 67 EES--DGEMRELAEEEAAAIEAKLPDLERAMMLHLLPRDEADARNAILEVRAGTGGDEAA 124
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F MY+RY+Q +GW+FEV+ V+E+++ GYKEA A ISG V+ LKFESG+HRVQ
Sbjct: 125 LFAADLFAMYQRYAQGRGWRFEVMEVSENEIGGYKEAIATISGQSVFAHLKFESGVHRVQ 184
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VA+LP+A+EVDV + ++DLRID YRS G+GGQH NTT+SAVR+
Sbjct: 185 RVPATESQGRIHTSAATVAVLPEAEEVDVAIDDKDLRIDVYRSSGAGGQHVNTTDSAVRI 244
Query: 308 THIPTGMTISIQDERSQH 325
TH+PTG+ ++ QDE+SQH
Sbjct: 245 THLPTGVVVTQQDEKSQH 262
>gi|398969075|ref|ZP_10682688.1| peptide chain release factor 1 [Pseudomonas sp. GM30]
gi|398142769|gb|EJM31660.1| peptide chain release factor 1 [Pseudomonas sp. GM30]
Length = 360
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 164/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE +L + +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 33 AKFRAYSKEYAELEPVVQGYKKLLGVQSDLEGAQALLKDS--DPDMREMAVEEVREAKEL 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
RL+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LIRLEDDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A I G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARIEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 211 PDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|227529623|ref|ZP_03959672.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
gi|227350413|gb|EEJ40704.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
Length = 362
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 178/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKKVTQTISDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E S+D D+ ++ +EL A D++ +L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 LLRE-SDDPDLTELTKDELSSAKDQQAKLEKELEILLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++ +GWK EVV +E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAENQGWKVEVVDKSETEVGGFKEIALMITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|348027434|ref|YP_004767239.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
gi|341823488|emb|CCC74412.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
Length = 362
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 170/260 (65%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+V A+E + LE ++ P A E+ K KE L + + IDG K
Sbjct: 7 KVQAVENKFMDLEQQISDPSVIARQDEWQKLTKEHASLMPIVETFRKYEDITSTIDGDKE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+I + D D++ MA EE+ E+ L+ L +LPKD D+++ I+E+RAG GG+E
Sbjct: 67 IIDDPDSDNDLIAMAKEEMNGLTKEQADLEDQLHVLMLPKDPRDDKNVIMEIRAGAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKK-GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
A+LFA D+F+MY +Y +K+ GWK ++ +L G+KE ++ G GVYGKLK+ESG+H
Sbjct: 127 AALFAGDLFRMYMKYIEKQPGWKTSIISSNAPELGGFKEVVFSVEGSGVYGKLKYESGVH 186
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE GR+HTS +VA+LP+A++V++ L +D+R+D +R+ G+GGQH N T+SA
Sbjct: 187 RVQRVPVTEAGGRIHTSTATVAVLPEAEDVEIDLNMDDVRVDYFRASGAGGQHVNKTSSA 246
Query: 305 VRVTHIPTGMTISIQDERSQ 324
VR+THIPTGM + QDERSQ
Sbjct: 247 VRMTHIPTGMVVECQDERSQ 266
>gi|452944167|ref|YP_007500332.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
gi|452882585|gb|AGG15289.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
Length = 356
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 177/266 (66%), Gaps = 15/266 (5%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
I+ +EQ+ L E + A L+ Y +K+L++L L + K+I+
Sbjct: 10 IQDIEQKYLQTEEKLASLD-----ITKDADTYKALSKDLKELSYIHELYKDYNKILKDIE 64
Query: 122 GLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRLQSL--LLKSLLPKDDADERDCILEVR 178
K L+ +DKD+ ++A +EL L I K LQ L+ L PKD D ++ ILE+R
Sbjct: 65 DTKELL----KDKDLRELAEKELENLNI---KLLQKEKELINVLTPKDANDSKNVILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GGEEA+LFA D+ +MY+RY+++KGWKF ++ ++ L GYKE +I G VY LK
Sbjct: 118 AGAGGEEAALFAADLLRMYQRYAERKGWKFNILEANKTGLGGYKEVIVSIEGKNVYSHLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP+TE GR+HTS ++VA+LP+ADE +V + +DLRI+T+R+ G+GGQ+
Sbjct: 178 YESGVHRVQRVPITESGGRIHTSTITVAVLPEADETEVIINPQDLRIETFRASGAGGQYV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQ 324
NTT SAVR+THIPTG++IS QDERSQ
Sbjct: 238 NTTESAVRITHIPTGISISCQDERSQ 263
>gi|227524270|ref|ZP_03954319.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
gi|227088501|gb|EEI23813.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
Length = 361
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 177/260 (68%), Gaps = 2/260 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFAVD+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAVDLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 247 RMTHLPTGIVVAMQDERSQQ 266
>gi|83859678|ref|ZP_00953198.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
gi|83852037|gb|EAP89891.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
Length = 357
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 173/241 (71%), Gaps = 8/241 (3%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A P E K +KE +L+ EL+T ++ + +++I + S D+DM+++A EE
Sbjct: 26 ADPDEIVKLSKEHAELKLVAEKARELKTARESFEEAEAIIEDGS-DRDMVELAEEERQ-- 82
Query: 148 IDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ +KRL L L L+PKD D+ +LE+RAGTGG+EA+LFA D+F+MYERY+
Sbjct: 83 -ELKKRLPGLERELQLLLIPKDRDDDASIMLEIRAGTGGDEAALFAGDLFRMYERYASNH 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
GWK +VV +E+++ GYKE A++SG GV+GK+KFESG+HRVQRVP+TE GR+HTSA +
Sbjct: 142 GWKVDVVEASEAEVGGYKEIVASVSGKGVFGKMKFESGVHRVQRVPVTESGGRIHTSAAT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+ + V++ +++ED+RIDT R+ G+GGQH N T SAVR+THIPTG+ + + E+SQ
Sbjct: 202 VAVLPEPENVEIDIKDEDIRIDTMRASGAGGQHVNKTESAVRMTHIPTGIVV-VSSEKSQ 260
Query: 325 H 325
H
Sbjct: 261 H 261
>gi|317121004|ref|YP_004101007.1| peptide chain release factor 1 (bRF-1) [Thermaerobacter marianensis
DSM 12885]
gi|315590984|gb|ADU50280.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter
marianensis DSM 12885]
Length = 381
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 164/238 (68%), Gaps = 1/238 (0%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A P + +E +L + R +++ ++L+ E ++D D T E+
Sbjct: 51 ADPRRWQPLAQERAELEPLVDAYRRWREAGADLEAARALLRE-TDDADEHAYLTAEVERL 109
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
E +RL+ L LLP+D D+RD I+E+RAGTGGEEA+LFA D+F+MY+RY++++GW+
Sbjct: 110 EAERQRLERTLRSLLLPRDPRDQRDVIMEIRAGTGGEEAALFAGDLFRMYQRYAERQGWR 169
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
EV+ TESDL G+KE A+SG G + +LK ESG+HRVQRVP+TE +GR+HTS +VA+
Sbjct: 170 TEVMAATESDLGGFKEVVFAVSGRGAFSRLKHESGVHRVQRVPVTEAAGRIHTSTATVAV 229
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+A+EV+V++ +DL IDT+ + G GGQH N T SAVR+TH PTG+ ++ QDERSQH
Sbjct: 230 LPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAVRITHKPTGIVVTCQDERSQH 287
>gi|269102026|ref|ZP_06154723.1| peptide chain release factor 1 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161924|gb|EEZ40420.1| peptide chain release factor 1 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 362
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 171/260 (65%), Gaps = 5/260 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R +++L+ P + ++ +KE +L + + Q ++ + + E
Sbjct: 12 LEERYEEVQHLLGDPSVISDQDKFRSLSKEYSQLEEVTKCFQAYKQAQDDLAAAEEMANE 71
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D +M +MA EE+ A E +RL+ L L+PKD DER+C LE+RAG GG+EA +F
Sbjct: 72 --DDAEMREMAQEEIKEAKAEIERLEDELQVLLIPKDPNDERNCFLEIRAGAGGDEAGIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY++++GW+ EV+ +++ GYKE A ++G G YG LKFESG HRVQRV
Sbjct: 130 AGDLFRMYSRYAERRGWRIEVMSANDAEHGGYKEMIAKVTGDGAYGVLKFESGGHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VA+LP+ E ++ + DL+IDTYRS G+GGQH NTT+SA+R+T
Sbjct: 190 PATESQGRVHTSACTVAVLPEIPEAEIPEINPSDLKIDTYRSSGAGGQHVNTTDSAIRIT 249
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 250 HLPTGIVVECQDERSQHKNK 269
>gi|281208935|gb|EFA83110.1| peptide chain release factor 1 [Polysphondylium pallidum PN500]
Length = 463
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 194/317 (61%), Gaps = 31/317 (9%)
Query: 27 RNPLLHQRWFVQRAAATPSLSNFR----------SYSTEMLSNDLIKIMEQRVLAIERRS 76
RN LL + + T L+++R S+S+ S L ++ ++ + +
Sbjct: 60 RNSLLSTTFLINNR--TNQLNSYRYSTTNNNDDYSFSSPYFSTTLSTALQNKLKMMSNKY 117
Query: 77 ACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L++L+ S + + + + +++ +S+ L R EI +K L K M
Sbjct: 118 TTLKSLMESQTLSQEDIKRTSNDAQQIEESVQL---FRQYVNEIGNIKEL-------KMM 167
Query: 137 LDMATEELC--LAIDEEKR-------LQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
LDM EE + I++ K L+ L+ SLLP D D+ + I+E+RAGTGG EA
Sbjct: 168 LDMEKEEASREMIIEDLKAMGEQLAALEKSLIYSLLPADKDDDGNAIIEIRAGTGGGEAQ 227
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA ++F+MYE Y+ KGW+FE + ++ +D+ G +EASAAISG GV+G LK ESG+HRVQ
Sbjct: 228 LFAHEMFRMYEGYAATKGWRFESLDISYTDVGGCREASAAISGKGVFGFLKNESGVHRVQ 287
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
R+P TE GR+HTS +VAI+P+ EVD+++ + DL+ID +RS G+GGQ NTT+SAVR+
Sbjct: 288 RIPDTETQGRIHTSTTTVAIMPEPKEVDIKINDRDLKIDVFRSSGNGGQSVNTTDSAVRI 347
Query: 308 THIPTGMTISIQDERSQ 324
H+PTG+T+S+QDERSQ
Sbjct: 348 VHLPTGITVSMQDERSQ 364
>gi|431805626|ref|YP_007232527.1| peptide chain release factor 1 [Liberibacter crescens BT-1]
gi|430799601|gb|AGA64272.1| Peptide chain release factor 1 [Liberibacter crescens BT-1]
Length = 357
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 1/234 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY K N E ++ + I K++E L S++ + + D+++ ++ ELC ++
Sbjct: 31 EYIKLNSEYVNIKPIVEKIDSYDQKKEEEKNLLSVLSDQNIDQELKELVEIELCEIEKQK 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ + LLPKD +E+ ILE+R+GTGG EA+LF D+F+MYERYS + WK E++
Sbjct: 91 EILENEIKYLLLPKDADNEKSSILEIRSGTGGLEAALFVGDLFRMYERYSSLRKWKVELL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+E D GYKE AAISG GV+ +LKFESG+HRVQRVP+TE SGRVHTSA +VA+LP+A
Sbjct: 151 SASEGDAGGYKEIIAAISGQGVFSRLKFESGVHRVQRVPMTEASGRVHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VD+ + ED+RIDT RS G+GGQH NTT+SAVR+THIP+G+ ++ E+SQH
Sbjct: 211 KDVDIDIAPEDIRIDTMRSSGAGGQHVNTTDSAVRITHIPSGIVVT-SSEKSQH 263
>gi|197104299|ref|YP_002129676.1| peptide chain release factor 1 [Phenylobacterium zucineum HLK1]
gi|196477719|gb|ACG77247.1| peptide chain release factor RF-1 [Phenylobacterium zucineum HLK1]
Length = 377
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 164/232 (70%), Gaps = 6/232 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ + R +Q E++ + S D +M +A +EL +
Sbjct: 54 SKEHAELKPVADAVQALERARAEQPELEEMA-----ASGDAEMAALARDELEALKERLPE 108
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+ +
Sbjct: 109 LEREVALLLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTRGWRVEIDSI 168
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E D GYKE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ ++
Sbjct: 169 SEGDAGGYKEIIASITGEGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEVED 228
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
V++ +R++D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 229 VEIEVRDQDIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVT-SSEKSQH 279
>gi|389686011|ref|ZP_10177334.1| peptide chain release factor 1 [Pseudomonas chlororaphis O6]
gi|399008556|ref|ZP_10711026.1| peptide chain release factor 1 [Pseudomonas sp. GM17]
gi|425901493|ref|ZP_18878084.1| peptide chain release factor 1 [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388550353|gb|EIM13623.1| peptide chain release factor 1 [Pseudomonas chlororaphis O6]
gi|397883269|gb|EJK99755.1| peptide chain release factor 1 [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398115992|gb|EJM05763.1| peptide chain release factor 1 [Pseudomonas sp. GM17]
Length = 360
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + ++ Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVETYKQVLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LVELESTLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLRIDTYRS G+GGQH N T+SA+R+THIP+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQH 266
>gi|260767753|ref|ZP_05876688.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972]
gi|375130242|ref|YP_004992342.1| peptide chain release factor 1 [Vibrio furnissii NCTC 11218]
gi|260617262|gb|EEX42446.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972]
gi|315179416|gb|ADT86330.1| peptide chain release factor 1 [Vibrio furnissii NCTC 11218]
Length = 362
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 160/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + H + Q ++ + + E +D +M +MA +E+ +A E +RL
Sbjct: 39 SKEYSQLEEITHCFQAYQQAQDDLSAAEEMAKE--DDAEMREMAQDEIKVAKAEIERLSD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY R+++K+GW+ EV+ E+
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRFAEKRGWRIEVMSSNEA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E ++
Sbjct: 157 EHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAVMAEVPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+R DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 217 PEIRTADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 269
>gi|332298739|ref|YP_004440661.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168]
gi|332181842|gb|AEE17530.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168]
Length = 359
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 174/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ + +R A L +++ PE P Y + +E L M +E + + I
Sbjct: 1 MLKKLEELSKRYAELNDMIQDPELVRDPKRYKEIMREHSHLSQVMDSYAEYKEVLQGISE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ LI E +D DM +MA EEL ++S L L+P D +E++ I+E+R G G
Sbjct: 61 AQHLITE-EDDHDMKEMAREELKALESRVPEMESALKMLLIPPDPLEEKNIIMEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+F+MY RY++ K WK+E++ +E+++ GYKE S +ISG VYG L++E G
Sbjct: 120 GDEASLFAADLFRMYTRYAEIKNWKYEIMDASETEVGGYKEISFSISGKFVYGSLRWEGG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSAV+VA+LP+A+E ++ +R EDLR+D R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEAQGRIHTSAVTVAVLPEAEETEIEIRPEDLRVDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+PTG+ + QDE+SQ
Sbjct: 240 SAVRLTHLPTGLVVIQQDEKSQ 261
>gi|406706711|ref|YP_006757064.1| peptide chain release factor 1 (bRF-1) [alpha proteobacterium
HIMB5]
gi|406652487|gb|AFS47887.1| bacterial peptide chain release factor 1 (bRF-1) [alpha
proteobacterium HIMB5]
Length = 356
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/242 (50%), Positives = 171/242 (70%), Gaps = 11/242 (4%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT---EELCLA 147
AE SK +L ++ D S + + ++ID L+ +I + D ++ MA EEL L
Sbjct: 32 AEKSKEYSDLNEIIDEAK--SYISFENEKID-LEKIINDKESDNEIKSMAEQELEELKLK 88
Query: 148 IDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
D+ EK+L+ LL PKD+AD+++ I+E+RAGTGG EASLFA D+FKMYE+ KK W
Sbjct: 89 YDKSEKKLKFFLL----PKDEADKKNAIIEIRAGTGGLEASLFAGDLFKMYEKVCNKKKW 144
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
E++ +++S+ G KE A+I G +Y LK+ESG+HRVQRVP TE GRVHTSA +VA
Sbjct: 145 SLELISISKSEAGGLKEVIASIRGSNIYSTLKYESGVHRVQRVPDTETQGRVHTSAATVA 204
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
+LP+A+EVDV++ + DLRID +R+GG GGQ NTT+SAVR+THIPTG+++S QDE+SQH
Sbjct: 205 VLPEAEEVDVKINDSDLRIDVFRAGGPGGQSVNTTDSAVRITHIPTGISVSQQDEKSQHK 264
Query: 327 VK 328
K
Sbjct: 265 NK 266
>gi|297182635|gb|ADI18793.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF4000_37C10]
Length = 358
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/248 (45%), Positives = 166/248 (66%)
Query: 78 CLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137
LE + + + +++ +K +R+ ++ + +KE L+ +I + DKD++
Sbjct: 16 TLEKELASGDINKKDFANKSKGYSSIREVINQARSYLSFKKEQAELEKIIEDKKSDKDII 75
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
++A EL + + + +L LLPKD+AD ++ ILE+RAGTGG EA+LF D++KMY
Sbjct: 76 ELAKNELIQLSKKREENEKILKVYLLPKDEADSKNAILEIRAGTGGLEATLFVADLYKMY 135
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
ER K W FE++ +++S+ G+KE I G +Y LKFESG+HRVQRVP TE GR
Sbjct: 136 ERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSFLKFESGVHRVQRVPETETQGR 195
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
VHTSA +VA+LP+A+E+DV + +DLRID +RS G GGQ NTT+SAVR+TH+PTG+ +S
Sbjct: 196 VHTSAATVAVLPEAEEIDVNINEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVS 255
Query: 318 IQDERSQH 325
QDE+SQH
Sbjct: 256 QQDEKSQH 263
>gi|184154903|ref|YP_001843243.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
gi|238692951|sp|B2GAT1.1|RF1_LACF3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183226247|dbj|BAG26763.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
Length = 360
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 175/260 (67%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 7 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL A + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 67 MLREES-DPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 126 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 186 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 246 RMTHLPTGIVVAMQDERSQQ 265
>gi|227514467|ref|ZP_03944516.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|385812049|ref|YP_005848440.1| peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
gi|227087153|gb|EEI22465.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|299782948|gb|ADJ40946.1| Peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
Length = 362
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 175/260 (67%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL A + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREES-DPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|436838820|ref|YP_007324036.1| peptide chain release factor 1 [Fibrella aestuarina BUZ 2]
gi|384070233|emb|CCH03443.1| peptide chain release factor 1 [Fibrella aestuarina BUZ 2]
Length = 357
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 169/262 (64%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ AI R + + QPE + P + K +KE ++L + + EI+
Sbjct: 1 MIEQLEAIRERFNEVGQQIVQPEVVSDPKRFMKLSKEYKELDRIVQQYVSYQQVLAEIEN 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ LI +D+D ++A EEL +L++ L + L+PKD D R+ ILEVR GTG
Sbjct: 61 ARQLI-ATEKDEDFRELAKEELEQLQPRRDQLEADLKEMLIPKDPNDSRNIILEVRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ K GWK +V TE GYKE A + G VYGK+KFESG
Sbjct: 120 GDEAAIFAGDIFRMYQRFCDKMGWKMSIVDFTEGSSGGYKEIVAEVEGEDVYGKMKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV L D+R DT+ S G+GGQ NTT
Sbjct: 180 VHRVQRVPATETQGRIHTSAASVAVLPEAEEVDVDLNMNDIRKDTFCSSGAGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDERSQ
Sbjct: 240 SAVRLTHIPTGLVVQCQDERSQ 261
>gi|253827187|ref|ZP_04870072.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313141390|ref|ZP_07803583.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|253510593|gb|EES89252.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313130421|gb|EFR48038.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
Length = 356
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 149/198 (75%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+DK++ D+A EE+ A E + L+S + LLPKD DE++ LE+RAGTGG+EA +F
Sbjct: 67 DDKELGDLAKEEIKEAELENQNLESEIKILLLPKDPNDEKNIYLELRAGTGGDEAGIFVG 126
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+FK Y RY++ KGWK E++ +E+++ GYKE A I G G Y +LKFE G HRVQRVP
Sbjct: 127 DLFKAYIRYAESKGWKVEIISSSENNVGGYKEVIALIKGKGAYSRLKFEGGTHRVQRVPE 186
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+THIP
Sbjct: 187 TESQGRIHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAVRITHIP 246
Query: 312 TGMTISIQDERSQHMVKD 329
TG+++S+QDE+SQH KD
Sbjct: 247 TGISVSMQDEKSQHKNKD 264
>gi|168177471|ref|ZP_02612135.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916]
gi|226947362|ref|YP_002802453.1| peptide chain release factor 1 [Clostridium botulinum A2 str.
Kyoto]
gi|254790873|sp|C1FQ97.1|RF1_CLOBJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|182670538|gb|EDT82512.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916]
gi|226843349|gb|ACO86015.1| peptide chain release factor 1 [Clostridium botulinum A2 str.
Kyoto]
Length = 358
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLKEES-DKELREMAQEEIKELTLRLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + AI G G Y +LK+
Sbjct: 117 GAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|189424095|ref|YP_001951272.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
gi|238692126|sp|B3E628.1|RF1_GEOLS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189420354|gb|ACD94752.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
Length = 355
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 176/262 (67%), Gaps = 6/262 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E R LE+L++ P A+ E+ K ++E L LI R +K +D
Sbjct: 1 MFDKIQDLEIRFQELESLLSDPTVIANQPEFRKLSREHADL---APLIEAFRRYKKVLDE 57
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L+ E D +M +MA EE+ E++RL + + LLPKD D RD ILE+RAGTG
Sbjct: 58 LEE-NQELLADPEMKEMAEEEISRLSQEKERLDAEIKILLLPKDPNDSRDVILEIRAGTG 116
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LF+ D+F+MY R+++K WK E++ +ES+ GYKE A+I G VY KLK+ESG
Sbjct: 117 GDESALFSGDLFRMYSRFAEKNRWKVEMLSCSESERGGYKEVIASIEGQDVYAKLKYESG 176
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VAI+ +A++VD+ + DL+ID YRS G+GGQH NTT+
Sbjct: 177 THRVQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTD 236
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG ++ Q+ERSQ
Sbjct: 237 SAVRITHIPTGTVVACQEERSQ 258
>gi|304317929|ref|YP_003853074.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779431|gb|ADL69990.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 353
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 175/265 (66%), Gaps = 8/265 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
D +K +E R + + R+ + E++ + E + K KE L + ++ + R +K
Sbjct: 3 DKLKTIEDRYVELSRKLSDPESMKDMDE-----WKKMAKEHASLEE---IVQKYREYKKV 54
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+D +KS D D+ DMA EEL + E +L + + LLPKD DE+D I+E+RA
Sbjct: 55 LDDIKSTKEIIELDDDLKDMAQEELKSLEERENKLLNEIKLLLLPKDPNDEKDVIMEIRA 114
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE I+G G Y +LKF
Sbjct: 115 GAGGEEAALFAYDLFRMYTMYAEKKHWKYEIMSSNATELGGFKEVILNIAGKGAYSRLKF 174
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQR+P TE GR+HTS +VA+LP+ ++VD+ + D++ID +RSGG GGQ N
Sbjct: 175 ESGVHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVN 234
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+THIPTG+ IS QDERSQ
Sbjct: 235 TTDSAVRLTHIPTGIVISCQDERSQ 259
>gi|220905560|ref|YP_002480872.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254790877|sp|B8J4R4.1|RF1_DESDA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219869859|gb|ACL50194.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 356
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/266 (46%), Positives = 170/266 (63%), Gaps = 4/266 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +E++ LE + QP+ +Y K K L D + L R +E+
Sbjct: 1 MFAKLEGLEKKYLELEEALAQPDVFNDQDQYRKLTKAHADLSDVVELFRRHRAVSEELAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+++ ED ++ MA EE+ E L+ L LLP D DE++ ILE+RAGTG
Sbjct: 61 NRLLLHD--EDPEIRAMAQEEVHRGEAELPNLEHELKVMLLPSDPLDEKNTILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY++ K WK E++ + S+ GYKE I+G VY LKFE+G
Sbjct: 119 GEEAALFAADLFRMYTRYAELKNWKVEIMSESPSENGGYKEIICLIAGDRVYSHLKFEAG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A+EVDV +R EDLRID YR+ G+GGQH N T
Sbjct: 179 THRVQRVPATEAQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTE 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVR+TH+PT ++ QDERSQH K
Sbjct: 239 SAVRITHLPTNTVVTCQDERSQHKNK 264
>gi|297543676|ref|YP_003675978.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841451|gb|ADH59967.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 356
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 176/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + + + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S++K++ +MA EEL ++++ L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+RID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVRVTHIPTG+ ++ QDERSQ
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQ 260
>gi|90420193|ref|ZP_01228101.1| peptide chain release factor 1 [Aurantimonas manganoxydans
SI85-9A1]
gi|90335527|gb|EAS49277.1| peptide chain release factor 1 [Aurantimonas manganoxydans
SI85-9A1]
Length = 359
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 166/233 (71%), Gaps = 1/233 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y+K E L + + I + ++E+ ++++ E + +DM ++A E+ ++ +
Sbjct: 32 YTKLAAEYSGLEEVVAAIRTYQKAEQELAEARAILDEPAAGRDMRELAEIEIDELKEQLE 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + + LLPKD ADE+ ILE+RAGTGG EA LFA D+F+MY+RY++ WK E++
Sbjct: 92 TLTAEIRILLLPKDAADEKGAILEIRAGTGGSEAGLFAGDLFRMYQRYAEMNRWKVEIIS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E ++ GY+E AAI GVGV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 152 ASEGEVGGYREVIAAIRGVGVFSRLKFESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++DV ++ ED+RIDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 212 DIDVEVKTEDIRIDTMRASGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 263
>gi|289577389|ref|YP_003476016.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9]
gi|289527102|gb|ADD01454.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9]
Length = 356
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 176/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + + + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S++K++ +MA EEL ++++ L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D+RID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVRVTHIPTG+ ++ QDERSQ
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQ 260
>gi|269792432|ref|YP_003317336.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100067|gb|ACZ19054.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 357
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 149/193 (77%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D++M +A EE+ D L+ L LLP+D D ++ I+E+RAG GG+EA+LFA
Sbjct: 70 DDEEMRQLAKEEVQRLSDMLPGLEQDLKVLLLPRDPNDHKNVIIEIRAGAGGDEAALFAA 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++++GW++E++ + E+ + GYKE + G G Y KLKFESG+HRVQR+P+
Sbjct: 130 DLFRMYTRYTERQGWRYEIMEMNETGIGGYKEVVFLVKGEGAYSKLKFESGVHRVQRIPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE SGR+HTS +VA+LP+A++VDV++R EDL+IDTYR+ G+GGQ+ N T+SAVR+THIP
Sbjct: 190 TEASGRIHTSTATVAVLPEAEDVDVQIRPEDLKIDTYRASGAGGQYVNMTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQ 324
TG+ ++ QDERSQ
Sbjct: 250 TGLVVTCQDERSQ 262
>gi|424828081|ref|ZP_18252822.1| peptide chain release factor 1 [Clostridium sporogenes PA 3679]
gi|365979564|gb|EHN15617.1| peptide chain release factor 1 [Clostridium sporogenes PA 3679]
Length = 358
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 180/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE +L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHAELEVIVNTYREYKKTQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLREES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GG+EA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGDEAALFAANLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|392940166|ref|ZP_10305810.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
gi|392291916|gb|EIW00360.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
Length = 356
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 176/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ P ++ E+ K KE + D + E + ++I+
Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ S D+++ +MA EEL +++K+L + L+PKD DE++ I+E+RAG G
Sbjct: 61 TKELL--SSNDEELKEMAGEELSQLEEKKKKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KKGWK E++ E+D+ G+KE ISG G Y +LK+ESG
Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTS +VA+LP+ +EVDV + D++ID +RSGG GGQ NTT+
Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVRVTHIPTG+ ++ QDERSQ
Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQ 260
>gi|328952115|ref|YP_004369449.1| peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109]
gi|328452439|gb|AEB08268.1| Peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109]
Length = 357
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 181/264 (68%), Gaps = 3/264 (1%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
+R+ AIE R LE +++PE + Y + +E +L + + + + ++E D +
Sbjct: 4 ERLHAIENRYLELEARLSEPETIKNQELYQQYAREHAELSPLIQIFRQHQQVERECDNNQ 63
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
+L+ + D+++ ++A EE+ + + L++ L LLPKD D ++ +LE+RAGTGGE
Sbjct: 64 ALL-KTETDEEIKELAREEIQQLKERLEHLENELRFLLLPKDPNDAKNILLEIRAGTGGE 122
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA ++F+MY R++++ GWK E++ + + G KE A ISG VY LK+ESG+H
Sbjct: 123 EAALFAAELFRMYTRFAEQHGWKVEILSHNPTGIGGLKEIIALISGQQVYSLLKYESGVH 182
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSAV+VAILP+A++VDV++ E+LRID +RS G GGQ NTT+SA
Sbjct: 183 RVQRVPTTESQGRIHTSAVTVAILPEAEDVDVQISPEELRIDVFRSSGPGGQSVNTTDSA 242
Query: 305 VRVTHIPTGMTISIQDERSQHMVK 328
VR+TH+PTGM ++ QDE+SQH K
Sbjct: 243 VRITHLPTGMVVTCQDEKSQHKNK 266
>gi|257439051|ref|ZP_05614806.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
gi|257198541|gb|EEU96825.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
Length = 356
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 168/261 (64%), Gaps = 2/261 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R L +NQPE A PA + + +E + + L T Q + K+L+
Sbjct: 3 AVSHRFEELSIRLNQPETAADPALFRRLMQEYHEAEPVVQAYQALTTAQDHLAQAKALLE 62
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ D D +M +E+ E +L++ L LLPKD D++ I+E+R G GGEEA+L
Sbjct: 63 GETLDPDFKEMVQQEIGEKSQEVAQLENNLKILLLPKDVNDDKSVIMELRGGAGGEEAAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA + +MY Y Q +GW+ EV+ + E++L G KEA A++G G Y +LK+ESG+HRVQR
Sbjct: 123 FAHSLMRMYTMYVQSRGWELEVLNLNETELGGVKEAILAVNGAGAYNRLKYESGVHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTS +VA++PQA+EVD+ + +DLRIDT+RS G+GGQH N T+SA+RVT
Sbjct: 183 VPETETQGRIHTSTATVAVMPQAEEVDLVIDPKDLRIDTFRSSGAGGQHINKTSSAIRVT 242
Query: 309 HIPTGMTISIQDERSQHMVKD 329
HIPTGM + Q+ERSQ KD
Sbjct: 243 HIPTGMVVECQNERSQFQNKD 263
>gi|333899125|ref|YP_004472998.1| peptide chain release factor 1 [Pseudomonas fulva 12-X]
gi|333114390|gb|AEF20904.1| Peptide chain release factor 1 [Pseudomonas fulva 12-X]
Length = 360
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 160/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE ++ + E R Q +++G +L+ + D D+ +MA EE+ A
Sbjct: 34 QFRAYSKEYAEIEPVIAAFREFRKVQGDLEGALALLKDS--DPDLREMAEEEVDTARARL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L + LLPKD D R+ LEVRAGTGG+EA++FA D+F+MY RY++K+GW+ EV+
Sbjct: 92 AELEDSLQRMLLPKDPNDGRNVFLEVRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G V+GKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SANEGEHGGFKEVIARVEGDNVFGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 212 DEQMAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|398985057|ref|ZP_10690884.1| peptide chain release factor 1 [Pseudomonas sp. GM24]
gi|399013284|ref|ZP_10715594.1| peptide chain release factor 1 [Pseudomonas sp. GM16]
gi|398114223|gb|EJM04055.1| peptide chain release factor 1 [Pseudomonas sp. GM16]
gi|398154660|gb|EJM43126.1| peptide chain release factor 1 [Pseudomonas sp. GM24]
Length = 360
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 164/239 (68%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A ++ +KE +L + +L + Q +++G ++L+ + D DM +MA EE+ A
Sbjct: 30 ADQTKFRAYSKEYAELEPVVQTYKKLLSVQSDLEGAQALLKDS--DPDMREMAVEEVREA 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+
Sbjct: 88 KELLIALEGDLQRMLLPKDPNDGRNVYLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWR 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ E + GYKE A I G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+
Sbjct: 148 VEILSANEGEHGGYKEVIARIEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAV 207
Query: 268 LPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+ DE + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 208 LPEPDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|440751104|ref|ZP_20930341.1| Peptide chain release factor 1 [Mariniradius saccharolyticus AK6]
gi|436480309|gb|ELP36553.1| Peptide chain release factor 1 [Mariniradius saccharolyticus AK6]
Length = 357
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 174/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A ++Y+K NKE + L + L + + ID
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMSKYTKLNKEYKDLEKIVTLYDDYKLVLDNIDS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E +D D +MA EL +E L+ + ++L+PKD D +D ILE+RAGTG
Sbjct: 61 TKEIL-EKEKDPDFREMAKAELDELRQKETELEETIKQALIPKDPNDSKDSILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K+GWK V+ +T GYKE + I+G VYG +K+ESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFCEKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+ DEV+V + D+R DT+ S G GGQ NTT
Sbjct: 180 VHRVQRVPATETQGRVHTSAATVAVLPEMDEVEVNINMNDVRKDTFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+P+G+ ++ QDE+SQ
Sbjct: 240 SAVRLTHLPSGLVVTCQDEKSQ 261
>gi|239787352|emb|CAX83829.1| Peptide chain release factor RF-1 [uncultured bacterium]
Length = 354
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/196 (57%), Positives = 148/196 (75%), Gaps = 6/196 (3%)
Query: 133 DKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D M +A EEL LA +E ++ +LL LPKD DER ILE+RAGTGG+EA LF
Sbjct: 67 DPGMRQLAEEELGALKLATEETWQMLRVLL---LPKDVDDERSAILEIRAGTGGDEAGLF 123
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY+RY+ GW+F+V+G++E+ L KEA I G GV+ KLKFESG+HRVQRV
Sbjct: 124 AADLMRMYQRYAAIHGWQFDVLGLSETGLGSVKEAQVGIVGKGVFAKLKFESGVHRVQRV 183
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE SGRVHTSA +VA+LP+ ++VD+ +++EDLRID R+ G+GGQH NTT+SAVR+TH
Sbjct: 184 PETESSGRVHTSAATVAVLPEVEDVDIEIKDEDLRIDICRASGAGGQHVNTTDSAVRLTH 243
Query: 310 IPTGMTISIQDERSQH 325
+PTG+ ++ QDERSQH
Sbjct: 244 LPTGLVVAQQDERSQH 259
>gi|337285924|ref|YP_004625397.1| peptide chain release factor 1 [Thermodesulfatator indicus DSM
15286]
gi|335358752|gb|AEH44433.1| peptide chain release factor 1 [Thermodesulfatator indicus DSM
15286]
Length = 366
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 154/214 (71%), Gaps = 16/214 (7%)
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEE------------KRLQSLLLKSLLPKDDADER 171
K ++ + +++K++L+ A EE+ EE KRL LL+ PKD DE+
Sbjct: 58 KKVLKDIADNKELLEDADEEIAKLAREELKELEAEREALEKRLMLLLV----PKDPNDEK 113
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ +LE+RAGTGGEEA+LFA D+F+MY RY+++KGW+ E++ V + L G+KE A I G
Sbjct: 114 NIMLEIRAGTGGEEAALFAADLFRMYSRYAERKGWEVEILDVNPTGLGGFKEIIAMIKGK 173
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSG 291
G Y +LK+ESG+HRVQR+P TE GR+HTSAV+VA+LP+A+EVDV +R EDL+IDT R+
Sbjct: 174 GAYSRLKYESGVHRVQRIPETESGGRIHTSAVTVAVLPEAEEVDVEIRPEDLKIDTMRAS 233
Query: 292 GSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T SAVR+THIPTG+ + +ERSQH
Sbjct: 234 GAGGQHVNKTESAVRITHIPTGIVVYCANERSQH 267
>gi|46581318|ref|YP_012126.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601501|ref|YP_965901.1| peptide chain release factor 1 [Desulfovibrio vulgaris DP4]
gi|387154537|ref|YP_005703473.1| peptide chain release factor 1 [Desulfovibrio vulgaris RCH1]
gi|61214640|sp|Q727E1.1|RF1_DESVH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223554|sp|A1VAK8.1|RF1_DESVV RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|46450740|gb|AAS97386.1| peptide chain release factor 1 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561730|gb|ABM27474.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfovibrio
vulgaris DP4]
gi|311234981|gb|ADP87835.1| peptide chain release factor 1 [Desulfovibrio vulgaris RCH1]
Length = 357
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 166/236 (70%), Gaps = 13/236 (5%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL----CLAID 149
+KA+ +L+++ D+ E+ KQ D K L+ + D ++ MA EE+ D
Sbjct: 35 TKAHADLKQVVDAFRRYKEM--KQNLADN-KELLGDS--DHEIRAMAHEEIKAIEAALPD 89
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E+ L+ LLL P+D D+++ +LE+RAGTGGEEASLFA D+F+MY RY++ GWK E
Sbjct: 90 IEQELKILLL----PRDPMDDKNILLEIRAGTGGEEASLFAADLFRMYTRYAEIMGWKVE 145
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
V+ ++SD GYKE A I+G VY +LK+ESG HRVQRVP TE GR+HTSA +VA++P
Sbjct: 146 VLSASDSDTGGYKEIIALIAGDKVYSRLKYESGTHRVQRVPATEAQGRIHTSAATVAVMP 205
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+A+EVDV +R +DLRID YR+ G+GGQH N T SAVR+TH+PTG+ ++ QDE+SQH
Sbjct: 206 EAEEVDVDIRPDDLRIDVYRASGAGGQHVNKTESAVRITHLPTGIVVACQDEKSQH 261
>gi|398832820|ref|ZP_10590970.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
gi|398222599|gb|EJN08969.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
Length = 359
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM D A +E+ A L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDPDMKDFAQDEIDAARARMAALEGDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E+V +ES+L GYKE A I+G+G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRYAERMRWQVEIVSASESELGGYKEVIARIAGLGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QD+RSQH K
Sbjct: 247 THLPTGIVVECQDDRSQHKNK 267
>gi|440228048|ref|YP_007335139.1| peptide chain release factor [Rhizobium tropici CIAT 899]
gi|440039559|gb|AGB72593.1| peptide chain release factor [Rhizobium tropici CIAT 899]
Length = 359
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 180/267 (67%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQK 118
+ K+ +++ +ERR +E ++ A PA Y K E +L+ + I +
Sbjct: 1 MAKLPVEKMRELERRFGEIEARMS---AGPAADVYVKLASEYSELQPVVTKIRDYERALA 57
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E L++++ + S D++M D+A EL + + L+ + LLPKD ADE+ ILE+R
Sbjct: 58 EAADLEAMLSDKSVDREMRDLAEMELPEVKERIEALEKDIQVELLPKDAADEKSAILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG EA+LFA D+F+MYER++ GWK EV+ ++ + G+KE A ISG GV+ +LK
Sbjct: 118 AGTGGSEAALFAGDLFRMYERFAASNGWKVEVLSASDGEAGGFKEIIATISGKGVFSRLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R ED+RIDT RS G+GGQH
Sbjct: 178 FESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 238 NTTDSAVRITHLPSGIVVT-SSEKSQH 263
>gi|333893681|ref|YP_004467556.1| peptide chain release factor 1 [Alteromonas sp. SN2]
gi|332993699|gb|AEF03754.1| peptide chain release factor 1 [Alteromonas sp. SN2]
Length = 361
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 170/260 (65%), Gaps = 15/260 (5%)
Query: 79 LENLVNQPEASPA------------EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
LENLV + E A ++ +KE +L + + + Q+ +D +
Sbjct: 9 LENLVERFEEVQALLGDPQVIGNQDKFRNLSKEFSQLESVVGGFNAYQQAQENLDSANEM 68
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E +D +M +MA EEL +A + +RL++ L LLPKD D+ +C LEVRAG GG+EA
Sbjct: 69 LKE--DDAEMREMAQEELKIAKADIERLETELQVLLLPKDPNDDSNCFLEVRAGAGGDEA 126
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+F+MY RY++ KGW+ E++ E + GYKE A ISG GVYG LKFESG HRV
Sbjct: 127 AIFAGDLFRMYSRYAETKGWRVELINANEGEHGGYKEVVANISGDGVYGILKFESGGHRV 186
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
QRVP TE GR+HTSA +VA+LP+ E + + + DLRIDT+R+ G+GGQH N T+SA+
Sbjct: 187 QRVPDTESQGRIHTSACTVAVLPEIPESEAIDINPADLRIDTFRASGAGGQHVNKTDSAI 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+P+G+ + QDERSQH
Sbjct: 247 RITHLPSGLVVECQDERSQH 266
>gi|332140922|ref|YP_004426660.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|332140929|ref|YP_004426667.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410861179|ref|YP_006976413.1| peptide chain release factor 1 [Alteromonas macleodii AltDE1]
gi|238693241|sp|B4RSV6.1|RF1_ALTMD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|327550944|gb|AEA97662.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550951|gb|AEA97669.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410818441|gb|AFV85058.1| peptide chain release factor 1 [Alteromonas macleodii AltDE1]
Length = 361
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 169/250 (67%), Gaps = 5/250 (2%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ L+ PE ++ +KE +L D + + + Q+ + + ++ E +D +M
Sbjct: 19 VQALLGDPEVIGDQDKFRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A E +RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+M
Sbjct: 77 REMAQEEMKEAKGEIERLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++ +GW+ E+V ES+ GYKE A +SG GVYG LKFESG HRVQRVP TE G
Sbjct: 137 YSRYAESRGWRVELVNANESEHGGYKEVVANVSGDGVYGVLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA+LP+ E + + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RIHTSACTVAVLPEIPESEAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLV 256
Query: 316 ISIQDERSQH 325
+ QDERSQH
Sbjct: 257 VECQDERSQH 266
>gi|414154192|ref|ZP_11410512.1| Peptide chain release factor 1 [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411454377|emb|CCO08416.1| Peptide chain release factor 1 [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 355
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/270 (45%), Positives = 180/270 (66%), Gaps = 9/270 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE+ ++ P A A + + K +L + + + + ++++
Sbjct: 1 MLAKLQALEDKYLQLESQISDPAVMADRARWQQLVKSHSELGEVVDVFRRYKKARQDLQD 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E E ++M+++ EEL I+E E++L+ LLL PKD DE++ I+E+R
Sbjct: 61 NKQMLEEKLEPDFREMVELEIEELESKIEELEQKLKILLL----PKDPNDEKNVIMEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY RY++KKGW+ EV+ E+DL G+KE + I G G Y LKF
Sbjct: 117 GTGGEEAALFAGDLFRMYCRYAEKKGWRTEVIDANETDLGGFKEVTFVIEGKGAYSTLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DLRID + + G GGQ N
Sbjct: 177 ESGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIEINPNDLRIDLFCASGPGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
TT SAVR+TH+PTG +S QDE+SQH K+
Sbjct: 237 TTQSAVRITHLPTGTVVSCQDEKSQHKNKE 266
>gi|417886510|ref|ZP_12530654.1| peptide chain release factor 1 [Lactobacillus oris F0423]
gi|341592901|gb|EGS35758.1| peptide chain release factor 1 [Lactobacillus oris F0423]
Length = 362
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 177/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E ++D D+ M +EL + D +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRE-TDDPDLAAMTKDELAESKDRQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKNETEVGGFKEIALMITGNNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|297182948|gb|ADI19096.1| protein chain release factor a [uncultured alpha proteobacterium
HF0070_34A12]
Length = 353
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/261 (47%), Positives = 175/261 (67%), Gaps = 8/261 (3%)
Query: 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLR---DSMHLISELRTKQKEIDGLK 124
+VLA RR+ L + SP E + ++EL +LR + + L+ L + L
Sbjct: 3 KVLA--RRNEVESRLADAASMSPDELASLSRELSELRPVCEQIDLVKRLEGDRDAAVMLA 60
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
E +E +M +E+ + EE LLL LP+D D R+ ILEVRAGTGG+
Sbjct: 61 EEAAEDAEMAEMAQAEIQEIEARLPEEMNSLQLLL---LPRDRDDSRNAILEVRAGTGGD 117
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+F MY+R++ K GW+FEV+ V+E+ + GYKEA+A I+G V+ +LKFESG+H
Sbjct: 118 EAALFASDLFGMYQRFAGKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVH 177
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GR+HTSA +VA+LP+A++VD+ ++ DLRID +R+ G GGQ NTT+SA
Sbjct: 178 RVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTTDSA 237
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+THIPTG+ +S QDE+SQH
Sbjct: 238 VRITHIPTGIVVSQQDEKSQH 258
>gi|170723617|ref|YP_001751305.1| peptide chain release factor 1 [Pseudomonas putida W619]
gi|229470352|sp|B1JEP6.1|RF1_PSEPW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|169761620|gb|ACA74936.1| peptide chain release factor 1 [Pseudomonas putida W619]
Length = 360
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 164/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A + ++E ++ + E R Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 ARFRAYSREYSEVEPVIGAYKEWRKVQDDLEGAQALLKDA--DPDMREMAVEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LVGLESQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEIIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPE 210
Query: 271 ADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE V + + DLR+DTYR+ G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 211 PDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|401679720|ref|ZP_10811644.1| peptide chain release factor 1 [Veillonella sp. ACP1]
gi|400218847|gb|EJO49718.1| peptide chain release factor 1 [Veillonella sp. ACP1]
Length = 360
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 179/267 (67%), Gaps = 9/267 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ E +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVEAFREYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 AGIDEAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + ++DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
N T SAVR+TH+PTG+ ++ QD+RSQ
Sbjct: 237 INKTESAVRITHLPTGIVVACQDQRSQ 263
>gi|312869581|ref|ZP_07729732.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
gi|311094867|gb|EFQ53160.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
Length = 362
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 176/260 (67%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVTDRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E + D D+ M +EL + D +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRETN-DPDLAAMTKDELAESKDRQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKNETEVGGFKEIALMITGNNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|386347700|ref|YP_006045949.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
gi|339412667|gb|AEJ62232.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
Length = 357
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 150/202 (74%)
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E +D ++ +MA EE+ E R + L L+P D D ++ ILE+RAGTGGEEA
Sbjct: 66 VLEEEDDHELKEMAREEIKALEGEIARTEQRLKLLLVPPDPLDGKNIILEIRAGTGGEEA 125
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA D+++MY RY+++KGWK E++ +E++L G++E AISG VYG L+FESG HRV
Sbjct: 126 ALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFESGGHRV 185
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P+TE GR+HTSAV+VA+LP+ +E +V +R ED+R+D +RS G GGQ NTT+SAVR
Sbjct: 186 QRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTDSAVR 245
Query: 307 VTHIPTGMTISIQDERSQHMVK 328
+TH+PTG+ +S QDE+SQH K
Sbjct: 246 ITHLPTGLVVSCQDEKSQHKNK 267
>gi|255065586|ref|ZP_05317441.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256]
gi|255050411|gb|EET45875.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256]
Length = 358
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 SLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQQAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKVKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|117926919|ref|YP_867536.1| peptide chain release factor 1 [Magnetococcus marinus MC-1]
gi|226739111|sp|A0LDT7.1|RF1_MAGSM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|117610675|gb|ABK46130.1| bacterial peptide chain release factor 1 (bRF-1) [Magnetococcus
marinus MC-1]
Length = 361
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 150/203 (73%)
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D +M MA EE ++ ++ Q L LLPKD D+++ ILE+RAGTGGEE
Sbjct: 66 MLAEAGDDAEMRQMAREERETLKNKLEQSQKHLHLMLLPKDPNDDKNVILEIRAGTGGEE 125
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LF D+F+MY R+++ KGW+ E++ + +DL GYKE A + G G Y LK+ESG+HR
Sbjct: 126 AALFVSDLFRMYGRFAEIKGWRIEMLSSSATDLGGYKELIAMVQGKGAYMGLKYESGVHR 185
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P+TE GR+HTSAV+VAILP+ADEV++ + ++DLRID YRS G GGQ NTT+SAV
Sbjct: 186 VQRIPVTETGGRIHTSAVTVAILPEADEVELHIEDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 306 RVTHIPTGMTISIQDERSQHMVK 328
R+TH+PTG+ + QDE+SQH K
Sbjct: 246 RITHLPTGLVVICQDEKSQHKNK 268
>gi|444380487|ref|ZP_21179617.1| Peptide chain release factor 1 [Enterovibrio sp. AK16]
gi|443675443|gb|ELT82175.1| Peptide chain release factor 1 [Enterovibrio sp. AK16]
Length = 362
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 158/233 (67%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + +++++ + + E +D +M +MA EE+ A E +RL
Sbjct: 39 SKEYSQLEEVTMCFTSYKQAEEDLEAAQEMANE--DDPEMREMAQEEVKAAKAEIERLSD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+C LE+RAG GG+EA++FA D+F+ Y R+++KKGW+ EVV
Sbjct: 97 ELQVLLLPKDPNDERNCFLEIRAGAGGDEAAIFAGDLFRSYSRFAEKKGWRVEVVNANHG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG +KFESG HRVQRVP TE GRVHTSA +VAILP+ E ++
Sbjct: 157 EHGGYKEMIAKVSGEGAYGVMKFESGGHRVQRVPATESQGRVHTSACTVAILPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEINPADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|410659534|ref|YP_006911905.1| Peptide chain release factor 1 [Dehalobacter sp. DCA]
gi|410662513|ref|YP_006914884.1| Peptide chain release factor 1 [Dehalobacter sp. CF]
gi|409021889|gb|AFV03920.1| Peptide chain release factor 1 [Dehalobacter sp. DCA]
gi|409024869|gb|AFV06899.1| Peptide chain release factor 1 [Dehalobacter sp. CF]
Length = 355
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 175/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ IE++ L L+ +PE A+ A++ K + L D + + E + ++I+
Sbjct: 1 MLNRLEEIEKKYDDLTELLAKPEIIANQADFQKYARSQSALTDIVAVFREYKEINRQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
LK ++ + D +M +MA E +K+L+ L LLPKD DE++ I+E+RAG G
Sbjct: 61 LKGML-DGERDPEMREMAEAEQDELTKSKKKLEGDLKILLLPKDPNDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D++KMY +Y++ + WK E + + +D+ G+KE I G G Y +LK+ESG
Sbjct: 120 GDEAALFAGDLYKMYTKYAESQNWKTEPLSASFTDIGGFKEIIFMIEGQGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS V+VA+LP+A+EVDV + D+RID + S G GGQ NTT
Sbjct: 180 VHRVQRIPATESGGRIHTSTVTVAVLPEAEEVDVAINPNDIRIDIFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+TH+PTG+ +S QDE+SQH KD
Sbjct: 240 SAVRITHLPTGIVVSCQDEKSQHKNKD 266
>gi|411008402|ref|ZP_11384731.1| peptide chain release factor 1 [Aeromonas aquariorum AAK1]
Length = 362
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 158/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H + R ++ ++ + ++ E ED D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQQFRQAEENLEATRQMLEE--EDADLREMAQEELPLAKATFE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 EAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|260772290|ref|ZP_05881206.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14]
gi|260611429|gb|EEX36632.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14]
Length = 362
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 148/198 (74%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A E +RL + L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEMKAAKAEIERLSAELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSASEAEHGGYKEMIAKVNGDGAYGVLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|237756512|ref|ZP_04585042.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691328|gb|EEP60406.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 360
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KE ++L + ++L +E + ++I+ +K L+ + D D+ ++A EEL + L+
Sbjct: 40 KEHKELSEILNLYNEYKKVNRQIEEVKQLL-NSTPDDDLRELAEEELESLKKHREDLEKK 98
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
+ +LLPKD DER+ ILE+R G GG+EASLFA ++F+MY+RY+++ GWK E++ + ++
Sbjct: 99 IEIALLPKDPNDERNVILEIRQGAGGDEASLFAAELFRMYQRYAERHGWKTEILSLHPTE 158
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
G KE A I G G Y +LK+ESG+HRVQRVP TE SGR+HTS V+VA+LP+A+EVD+
Sbjct: 159 KGGIKEVIALIKGKGAYSRLKYESGVHRVQRVPETESSGRIHTSTVTVAVLPEAEEVDIE 218
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
++ E+LRI+T R+GG+GGQH NTT+SAVR+THIPTGM ++ QDERSQ
Sbjct: 219 IKPEELRIETMRAGGAGGQHVNTTDSAVRITHIPTGMVVTCQDERSQ 265
>gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040551|gb|ACT57347.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 357
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 161/211 (76%), Gaps = 4/211 (1%)
Query: 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR-LQSLLLKSLLPKDDADERDCI 174
KQ+E D L ++I + + D ++ D+A E+ LAI++E R L++ + LLPKD D++ CI
Sbjct: 56 KQEEQD-LHTVIGDHNSDSEIRDLAQIEV-LAIEKEIRELENEINYLLLPKDTDDDKSCI 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
LE+RAGTGG EA+LF D+F+MYERY+ + WK EV+ +++D GYKE A ISG GV+
Sbjct: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
++KFESG+HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSG
Sbjct: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
GQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQH 263
>gi|383753168|ref|YP_005432071.1| putative peptide chain release factor 1 [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381365220|dbj|BAL82048.1| putative peptide chain release factor 1 [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 355
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 176/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE+L++ P+ A + + K +KE L + E + K I+
Sbjct: 1 MLDKLQAVEDKFLELESLISDPDVIADMSRWQKYSKEHASLAPIVEKFREYKDVTKGIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K++ +E S D +M EEL +++ L + L LLPKD D+++ I+E+R G G
Sbjct: 61 AKAM-FEESLDDEMRKFVEEELAELKAQKEVLDAELPILLLPKDPNDDKNVIVEIRGGVG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY RY +K+GWK E++ + ++L GYKE S ++G G Y KLK+ESG
Sbjct: 120 GEEAALFAGDLFRMYGRYVEKQGWKMEIIDGSPTELGGYKEISFMVTGFGAYSKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSAV+VA+LP+A++VDV + +DL ID Y + G+GGQH N T
Sbjct: 180 THRVQRVPATESGGRIHTSAVTVAVLPEAEDVDVDIDPKDLHIDLYCASGAGGQHVNRTE 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+THIPTG+ + QDERSQ KD
Sbjct: 240 SAIRITHIPTGIVVQCQDERSQLKNKD 266
>gi|404399170|ref|ZP_10990754.1| peptide chain release factor 1 [Pseudomonas fuscovaginae UPB0736]
Length = 360
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 154/210 (73%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE A ++ L+S L + LLPKD D R+ LE
Sbjct: 59 QSDLEGAQALLKDS--DPDMREMAVEEAREAKEQLVELESSLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ +E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRVEILSESEGEHGGYKEVIARVEGESVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLRIDTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+THIP+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHIPSGIVVECQEERSQH 266
>gi|259503694|ref|ZP_05746596.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
gi|259168326|gb|EEW52821.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
Length = 362
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 178/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E ++D D+ M +EL + + +++L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLRE-TDDPDLAAMTKDELAESKERQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY Y++K+GWK EVV +E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYLHYAEKQGWKVEVVDKSETEVGGFKEIALMITGTNVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++VDV + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|227510126|ref|ZP_03940175.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190331|gb|EEI70398.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 357
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 176/260 (67%), Gaps = 2/260 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFA D+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 247 RMTHLPTGIVVAMQDERSQQ 266
>gi|227513055|ref|ZP_03943104.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
gi|227083630|gb|EEI18942.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
Length = 361
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/260 (41%), Positives = 176/260 (67%), Gaps = 2/260 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE +LRD++ ++ + K++D +
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDEE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++ +L+ L LLPKD DE++ I+E+ GG+E
Sbjct: 67 MLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
SLFA D+F MY +Y++++GWK EV+ +E+++ G+KE I+G VY KLK+E+G HR
Sbjct: 127 GSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 247 RMTHLPTGIVVAMQDERSQQ 266
>gi|260663282|ref|ZP_05864173.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
gi|260552134|gb|EEX25186.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
Length = 362
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 174/260 (66%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A + K +KE LR+++ +E + + I
Sbjct: 9 KLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDTE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E S D D+++M EEL + + +LQ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREES-DPDLVEMTKEELNETKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GW EVV E+++ G+KE + I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQR+P TE +GRVHTS +V ++P+A++VDV L +D+R+D YRS G+GGQH N T+SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|404448496|ref|ZP_11013489.1| peptide chain release factor 1 [Indibacter alkaliphilus LW1]
gi|403766117|gb|EJZ26992.1| peptide chain release factor 1 [Indibacter alkaliphilus LW1]
Length = 358
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 171/262 (65%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QP+A +Y+K KE ++L + L E + + I
Sbjct: 1 MLDKLQALKDRFIEVGQLIIQPDAMSDMGKYTKLTKEYKELEKVVELYDEYKLVIENIKS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + +D D +MA EL +E L+ + + L+PKD D +DCILE+R GTG
Sbjct: 61 TKEIL-DKEKDPDFREMAKVELDELKKKESVLEEQVKQQLIPKDPNDSKDCILEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MYER+ +K+GWK V+ +T GYKE + I+G VYG +K+ESG
Sbjct: 120 GDEAAIFAGDLFRMYERFCEKQGWKLTVLDLTFGSSGGYKEIISTITGADVYGMMKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA SVA+LP+ DEV+V + D+R DTY S G GGQ NTT
Sbjct: 180 VHRVQRVPTTETQGRVHTSAASVAVLPEMDEVEVDINMNDIRKDTYCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH PTG+ ++ QDE+SQ
Sbjct: 240 SAVRLTHNPTGLVVTCQDEKSQ 261
>gi|333980787|ref|YP_004518732.1| peptide chain release factor 1 [Desulfotomaculum kuznetsovii DSM
6115]
gi|333824268|gb|AEG16931.1| Peptide chain release factor 1 [Desulfotomaculum kuznetsovii DSM
6115]
Length = 357
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 174/264 (65%), Gaps = 9/264 (3%)
Query: 71 AIERRSACLENLVNQPE-----ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++E+R L NL+ PE + +Y KA+ EL ++ + + E + ++I K
Sbjct: 7 SLEQRYEELSNLIADPEVINDRSRWQQYVKAHAELEEI---VEVYREYKKVCRDIREAKE 63
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ E E D ++ EL +++ L+ L LLP+D DE++ I+E+RAGTGGEE
Sbjct: 64 LLREKLE-PDFRELVETELEAQEEKKGELEHKLKVLLLPRDPNDEKNVIMEIRAGTGGEE 122
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+F+MY RY++++GWK +++ + +DL G KE I G G Y KLKFESG+HR
Sbjct: 123 AALFAADLFRMYTRYAERQGWKIDLMNTSYTDLGGIKEVIFLIEGRGAYSKLKFESGVHR 182
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTSA +VA+LP+A+EVDV + DLRID + S G GGQ NTT SAV
Sbjct: 183 VQRVPTTESGGRIHTSAATVAVLPEAEEVDVEINPNDLRIDVFCSTGPGGQSVNTTQSAV 242
Query: 306 RVTHIPTGMTISIQDERSQHMVKD 329
R+TH+PTG+ +S QDE+SQH K+
Sbjct: 243 RITHLPTGIVVSCQDEKSQHKNKE 266
>gi|262274708|ref|ZP_06052519.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886]
gi|262221271|gb|EEY72585.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886]
Length = 362
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + S + + +++ + + E +D +M +MA EE+ A ++ +RL
Sbjct: 39 SKEYSQLEEVIKCFSAYKQAESDLEAAQEMANE--DDPEMREMAQEEVKAAKEDIERLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+C LE+RAG GG+EA++FA D+F+MY R+++ KGW+ EV+
Sbjct: 97 ELQVLLLPKDPNDERNCFLEIRAGAGGDEAAIFAGDLFRMYSRFAESKGWRVEVINANHG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG +KFESG HRVQRVP TE GRVHTSA +VAILP+ E ++
Sbjct: 157 EHGGYKEMIAKVNGDGAYGVMKFESGGHRVQRVPATESQGRVHTSACTVAILPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEINPADLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|187777270|ref|ZP_02993743.1| hypothetical protein CLOSPO_00822 [Clostridium sporogenes ATCC
15579]
gi|187774198|gb|EDU38000.1| peptide chain release factor 1 [Clostridium sporogenes ATCC 15579]
Length = 358
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 179/265 (67%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +R+ IE + L N ++ P A+ E+ K KE L ++ E + Q++++
Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60
Query: 123 LKSLIYECSEDKDMLDMATEE---LCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E S DK++ +MA EE L L +++ +R ++LL LPKD D++D +E+RA
Sbjct: 61 DKEMLREES-DKELREMAQEEIKELTLKLEDLERELTILL---LPKDPNDDKDVFIEIRA 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GG+EA+LFA ++ +MY RY+++K WK E + + +D+ G+KE + A+ G G Y +LK+
Sbjct: 117 GAGGDEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAVKGKGAYSRLKY 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE SGR+HTS +VA+LP+ D+VD+ + DLRID YR+ G GGQ N
Sbjct: 177 ESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 237 TTDSAVRITHLPTGLVVTCQDEKSQ 261
>gi|167470794|ref|ZP_02335498.1| peptide chain release factor 1 [Yersinia pestis FV-1]
Length = 303
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA EEL +A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQDDIEAAEMML----DDLEMREMAQEELKIAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEIIAKISGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|51596331|ref|YP_070522.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
32953]
gi|81639458|sp|Q66AX5.1|RF1_YERPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51589613|emb|CAH21243.1| peptide chain release factor RF-1 [Yersinia pseudotuberculosis IP
32953]
Length = 360
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA EEL +A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQDDIEAAEMML----DDLEMREMAQEELKIAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKISGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|332800047|ref|YP_004461546.1| peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|438003343|ref|YP_007273086.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|332697782|gb|AEE92239.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
gi|432180137|emb|CCP27110.1| Peptide chain release factor 1 [Tepidanaerobacter acetatoxydans
Re1]
Length = 356
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 175/267 (65%), Gaps = 2/267 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE++ L + PE A E+ KE L + + E + K+++
Sbjct: 1 MIEKLEIIEKKYDELTKKIADPEIIARQEEWIGLTKEHASLEEIVTNFREYKEVLKQLEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L+ + + D +M + EL +++ +LQ L LLP+D D+R+ I+E+RAGTG
Sbjct: 61 NSELLEDAAGDIEMEQLIKSELEALEEKKSKLQEQLRILLLPQDPNDDRNVIMEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY++K+GWK E++ ++L G+KE I+G G Y +LK+ESG
Sbjct: 121 GDEAALFAGDLFRMYSRYAEKQGWKVEIIDSNPTELGGFKEVIFEINGKGAYSRLKYESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA +VA+LP+A EVD+ + +DLRID YR+ G GGQ NTT+
Sbjct: 181 VHRVQRVPSTEAGGRIHTSAATVAVLPEAHEVDIEINPDDLRIDIYRASGHGGQGVNTTD 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIPTG+ ++ QDERSQ KD
Sbjct: 241 SAVRITHIPTGLVVTCQDERSQLKNKD 267
>gi|296775701|gb|ADH42977.1| protein chain release factor A [uncultured SAR11 cluster alpha
proteobacterium H17925_38M03]
Length = 358
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 172/262 (65%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+V+ I + LE ++ + P ++K +KE L + E L+++
Sbjct: 5 NKVMDIINKHMSLEKELSTGDIDPKLFAKKSKEYSNLGSIIDSAKSFVKFDNEKKDLENI 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ + + D +M+D+A ++L ++ ++ L LLPKD+ D+++ I+E+RAGTGG EA
Sbjct: 65 VKDKTNDPEMIDLAEKDLSELFKRREKWENDLKIFLLPKDEDDDKNAIVEIRAGTGGLEA 124
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
SLF D+FKMYE+ KK W E++ +++S+ G+KE +++G +Y LK+ESG+HRV
Sbjct: 125 SLFCADLFKMYEKVCSKKKWNLEIINISKSEAGGFKEVIFSVNGNDIYSYLKYESGVHRV 184
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QR+P TE GRVHTSA +VA+LP+ +EVD+ ++ DLR+D +R+GG GGQ NTT+SAVR
Sbjct: 185 QRIPETETQGRVHTSAATVAVLPEVEEVDIEIKESDLRVDVFRAGGPGGQSVNTTDSAVR 244
Query: 307 VTHIPTGMTISIQDERSQHMVK 328
+THIP+G+ +S QDE+SQH K
Sbjct: 245 ITHIPSGVVVSQQDEKSQHKNK 266
>gi|367465545|ref|YP_002516272.3| peptide chain release factor 1 [Caulobacter crescentus NA1000]
gi|220963008|gb|ACL94364.1| bacterial peptide chain Release factor 1 (RF-1) [Caulobacter
crescentus NA1000]
Length = 335
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 10/233 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 66 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 186 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 237
>gi|238788553|ref|ZP_04632346.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641]
gi|238723466|gb|EEQ15113.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641]
Length = 360
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q ++D + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLDAAEMML----EDPEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|242309130|ref|ZP_04808285.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
gi|239524171|gb|EEQ64037.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
Length = 356
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 166/239 (69%), Gaps = 9/239 (3%)
Query: 92 EYSKANKELRKL-RDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
E SK +L KL + S + L++ I+ KSL+ +DK++ D+A EE+ A +
Sbjct: 34 ELSKEQSDLEKLVQKSKQYLQNLQS----IEENKSLL----DDKELGDLAKEEIKEAEAQ 85
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
+ L+S + LLPKD DE++ LE+RAGTGG+EA +F D+FK Y RY++ KGWK E+
Sbjct: 86 NQELESEIKVLLLPKDPNDEKNIYLELRAGTGGDEAGIFVGDLFKAYVRYAESKGWKVEI 145
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E++ GYKE A I G G Y +LK+E G HRVQRVP TE GR+HTSA++VAI+P+
Sbjct: 146 ISSNENNFGGYKEVIALIKGKGAYSRLKYEGGTHRVQRVPETESQGRIHTSAITVAIMPE 205
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+THIPTG+++S+QDE+SQH KD
Sbjct: 206 VDDVEVVINPNDLKIEVFRAGGHGGQCVNTTDSAVRITHIPTGISVSMQDEKSQHKNKD 264
>gi|66810982|ref|XP_639198.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
gi|60467811|gb|EAL65826.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
Length = 430
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 179/260 (68%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
R+ + ++S L N+++ +E K +KEL++ + + +L K KE+ L+++
Sbjct: 78 RLNLMGKKSKELRNMIDSNMGLGQSEIKKISKELQETAEPLGYFGDLIEKLKELKELQTM 137
Query: 127 IYECSEDKDMLDMATEELC-LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+ E + D+D M ++ L +E + L+ LL SLLP D D ILE+RAGTGG E
Sbjct: 138 LVEET-DEDGKQMIKSDINKLKQEEIEPLEKQLLFSLLPGSKDDAGDAILEIRAGTGGSE 196
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A LF DV++MY Y +KGW FE + ++ +++ GY++ + ++SG GV+G LK+ESG+HR
Sbjct: 197 AQLFTQDVYEMYRSYCLQKGWTFEPLELSVTEVGGYRDVTVSVSGKGVFGFLKYESGVHR 256
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVPLTE GR+HTS ++VAILP+ +VD+++ + DL++D YRS G+GGQ NTT+SAV
Sbjct: 257 VQRVPLTETQGRIHTSTITVAILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAV 316
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+T+++QDERSQH
Sbjct: 317 RITHLPTGITVAMQDERSQH 336
>gi|418632436|ref|ZP_13194867.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
gi|374832343|gb|EHR96058.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
Length = 358
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS GSGGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGSGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|70732476|ref|YP_262238.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
gi|119361580|sp|Q4K695.1|RF1_PSEF5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68346775|gb|AAY94381.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
Length = 360
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + ++ Q +++G ++L+ + D D+ +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVATYKQVLKVQADLEGAQALLKD--NDPDLREMAAEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LAELESSLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGESVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLRIDTYRS G+GGQH N T+SA+R+THIP+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQH 266
>gi|390568973|ref|ZP_10249262.1| peptide chain release factor 1 [Burkholderia terrae BS001]
gi|389939099|gb|EIN00939.1| peptide chain release factor 1 [Burkholderia terrae BS001]
Length = 360
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 147/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D+ ++L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDASMKDFAEEEIRAARDQMEKLEGELQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGDAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 247 THLPTGIVVECQDDRSQHKNKD 268
>gi|387126387|ref|YP_006294992.1| peptide chain release factor 1 [Methylophaga sp. JAM1]
gi|386273449|gb|AFI83347.1| Peptide chain release factor 1 [Methylophaga sp. JAM1]
Length = 362
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/194 (55%), Positives = 147/194 (75%), Gaps = 1/194 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M +MA EEL +A +++++L L K LLPKD D+R+ LEVRAGTGG+EA++F+ D
Sbjct: 73 DPEMREMAKEELAIAEEKQEQLAIDLQKLLLPKDPNDQRNIFLEVRAGTGGDEAAIFSGD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++ + W+ EV+ E + GYKE A I G G Y +LKFESG HRVQRVP T
Sbjct: 133 LFRMYTRYAESRRWQVEVLNAQEGEHGGYKEIIARIVGDGAYSRLKFESGAHRVQRVPET 192
Query: 253 EKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VAILP+ADE+D + + D+++DT+RS G+GGQH NTT+SAVR+THIP
Sbjct: 193 ESQGRIHTSACTVAILPEADEIDQIEINPADIKMDTFRSSGAGGQHVNTTDSAVRITHIP 252
Query: 312 TGMTISIQDERSQH 325
TG+ + Q+ERSQH
Sbjct: 253 TGIIVECQEERSQH 266
>gi|22096040|sp|Q9A9V5.2|RF1_CAUCR RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 356
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 10/233 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 35 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 86
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 87 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 146
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 147 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 206
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 207 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 258
>gi|91974579|ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB5]
gi|119361592|sp|Q13F02.1|RF1_RHOPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91681035|gb|ABE37337.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisB5]
Length = 361
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 159/239 (66%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL 146
E +EY + +EL +L + + R + E+ + +L+ + D +M MA E
Sbjct: 26 EVGASEYVRITRELSELNPLVEAVKAYREVRDELGDVDALLEDPDTDSEMRAMAEAERDA 85
Query: 147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGW 206
L + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW
Sbjct: 86 LDAHRAELIQEIRVALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGW 145
Query: 207 KFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVA 266
EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA
Sbjct: 146 SVEVISASEGSMGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVA 205
Query: 267 ILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 206 VLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
>gi|406966646|gb|EKD91998.1| hypothetical protein ACD_29C00256G0002 [uncultured bacterium]
Length = 362
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 172/264 (65%), Gaps = 5/264 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
++Q++L++ R L +++ PE + +Y +KE +L + + + T +KE
Sbjct: 6 LKQKLLSLSHRYQELGAMLSDPEIIHNQNKYRDLSKEYAQLAPITNCMKQYLTNEKEYHA 65
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+L +D +M +MA E+ L I E+++L+ L LLPKD D+R+ LE+RAGTG
Sbjct: 66 --ALEMRAEKDSEMREMAETEIKLLILEQEKLEETLKILLLPKDPNDDRNVFLEIRAGTG 123
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G EA++F D+F+MY R+++ +GW + VV D GYKE I G GVY +LKFESG
Sbjct: 124 GHEAAIFVGDLFRMYSRFAENQGWIYSVVSANTGDQGGYKEIIVRIEGQGVYSQLKFESG 183
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GRVHTSA +VA+LP+ D + ++ + +LR+DTYR+ G+GGQH N T
Sbjct: 184 AHRVQRVPTTEAQGRVHTSACTVAVLPELDSIEEITINPAELRVDTYRASGAGGQHVNKT 243
Query: 302 NSAVRVTHIPTGMTISIQDERSQH 325
+SA+R+THIP+G+ + QDERSQH
Sbjct: 244 DSAIRITHIPSGLVVECQDERSQH 267
>gi|16125109|ref|NP_419673.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
gi|13422113|gb|AAK22841.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
Length = 385
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 10/233 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ E+D + S D +M +M +E+ A+DE+
Sbjct: 64 SKEHAELRPVAEAVERLAKLSAERAELDVMAS-------DPEMAEMVRDEIQ-ALDEKLP 115
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GW+ E+
Sbjct: 116 VMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQTQGWRVEIDS 175
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E ++ G+KE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 176 ISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 235
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 236 DVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 287
>gi|330811719|ref|YP_004356181.1| peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378952822|ref|YP_005210310.1| peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|423699274|ref|ZP_17673764.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
gi|327379827|gb|AEA71177.1| Peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359762836|gb|AEV64915.1| Peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|387996495|gb|EIK57825.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
Length = 360
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 38 YSKEYAEVEPI---VATYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKDQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELESSLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|414343457|ref|YP_006984978.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
gi|411028792|gb|AFW02047.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
Length = 353
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 174/259 (67%), Gaps = 7/259 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RSEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGARAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ D +M ++A EL L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LA----DPEMKELAQAELEDIEAHIPELEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ E+++ G K+ A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAENEVAGLKDGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQH 325
+THIPTG+ +++Q+E+SQH
Sbjct: 241 ITHIPTGVVVAMQEEKSQH 259
>gi|395500681|ref|ZP_10432260.1| peptide chain release factor 1 [Pseudomonas sp. PAMC 25886]
Length = 360
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 164/234 (70%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + ++L Q +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 38 YSKEYAEVEPI---VAAYTQLLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKDKLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGVHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|297183691|gb|ADI19816.1| protein chain release factor a [uncultured alpha proteobacterium
EB000_37G09]
Length = 357
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 162/234 (69%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E +K ++EL ++R + +R + + + +I E D +M +MA E+ +
Sbjct: 31 ELTKLSRELAEVRPVAEQVFVVRHLAQALADARQMIEEEGADPEMAEMAETEISELGPQL 90
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L LLPKD D R+ ILEVRAGTGG+EA+LFA D+F MY+R + + GWKFEV+
Sbjct: 91 TEAEHDLKLLLLPKDTDDSRNAILEVRAGTGGDEAALFAADLFGMYQRTASRYGWKFEVM 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
++E+ + GYKEA+A ISG V+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A
Sbjct: 151 EISETGIGGYKEATANISGQDVFARLKFESGVHRVQRVPETETGGRIHTSAATVAVLPEA 210
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+VD+ + DLR+D +R+ G GGQ NTT+SAVR+TH+PTG+ +S QDE+SQH
Sbjct: 211 QDVDIEVSESDLRVDVFRASGPGGQSVNTTDSAVRITHLPTGIVVSQQDEKSQH 264
>gi|221632126|ref|YP_002521347.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
gi|221155596|gb|ACM04723.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
Length = 363
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 179/267 (67%), Gaps = 11/267 (4%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQ 117
D + +EQR +ER+ A P+ + P ++ +E +L + + L +L+
Sbjct: 10 DKLAELEQRFDEVERQLA-------DPDVATDPQRVAQLARERAELEEIVALYRQLKDID 62
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
+++ + L+ +ED D++++A EE+ + + + L + L+P+D DE+D I+E+
Sbjct: 63 RQVAQAEELLE--AEDPDLVELAAEEIDRLREYRETIYQELRRRLVPRDPNDEKDVIVEI 120
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEA+LFA D+F+MY RY++++GWK EV+ + ++L G+KE + G G Y
Sbjct: 121 RAGTGGEEAALFAADLFRMYTRYAERQGWKVEVLSSSPTELGGFKEIIFEVRGKGAYSHF 180
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
K ESG+HRVQRVP+TE SGR+HTS +VA+LP+ADEV+V + +DLRI+ +RS G GGQ
Sbjct: 181 KHESGVHRVQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDDLRIEVFRSSGHGGQS 240
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
NTT+SAVR+TH+PTG+ +S QDERSQ
Sbjct: 241 VNTTDSAVRITHLPTGIVVSCQDERSQ 267
>gi|303228461|ref|ZP_07315294.1| peptide chain release factor 1 [Veillonella atypica
ACS-134-V-Col7a]
gi|303230754|ref|ZP_07317501.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6]
gi|429759622|ref|ZP_19292120.1| peptide chain release factor 1 [Veillonella atypica KON]
gi|302514514|gb|EFL56509.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6]
gi|302516963|gb|EFL58872.1| peptide chain release factor 1 [Veillonella atypica
ACS-134-V-Col7a]
gi|429179583|gb|EKY20830.1| peptide chain release factor 1 [Veillonella atypica KON]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 179/267 (67%), Gaps = 9/267 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ E +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVEAFREYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + + D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 AGIDEAMEVIEDKTMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + ++DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
N T SAVR+TH+PTG+ ++ QD+RSQ
Sbjct: 237 INKTESAVRITHLPTGIVVACQDQRSQ 263
>gi|22126175|ref|NP_669598.1| peptide chain release factor 1 [Yersinia pestis KIM10+]
gi|45441669|ref|NP_993208.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus
str. 91001]
gi|108807397|ref|YP_651313.1| peptide chain release factor 1 [Yersinia pestis Antiqua]
gi|108811662|ref|YP_647429.1| peptide chain release factor 1 [Yersinia pestis Nepal516]
gi|145598396|ref|YP_001162472.1| peptide chain release factor 1 [Yersinia pestis Pestoides F]
gi|149366051|ref|ZP_01888086.1| peptide chain release factor 1 [Yersinia pestis CA88-4125]
gi|153947351|ref|YP_001401039.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
31758]
gi|162421626|ref|YP_001606878.1| peptide chain release factor 1 [Yersinia pestis Angola]
gi|165926418|ref|ZP_02222250.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165938830|ref|ZP_02227384.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009117|ref|ZP_02230015.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166210440|ref|ZP_02236475.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401373|ref|ZP_02306870.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420420|ref|ZP_02312173.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167424382|ref|ZP_02316135.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|170024410|ref|YP_001720915.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII]
gi|186895374|ref|YP_001872486.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+]
gi|218929128|ref|YP_002347003.1| peptide chain release factor 1 [Yersinia pestis CO92]
gi|229894728|ref|ZP_04509908.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A]
gi|229897428|ref|ZP_04512584.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229898071|ref|ZP_04513222.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901940|ref|ZP_04517061.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516]
gi|270490877|ref|ZP_06207951.1| peptide chain release factor 1 [Yersinia pestis KIM D27]
gi|294503912|ref|YP_003567974.1| peptide chain release factor 1 [Yersinia pestis Z176003]
gi|384122371|ref|YP_005504991.1| peptide chain release factor 1 [Yersinia pestis D106004]
gi|384126230|ref|YP_005508844.1| peptide chain release factor 1 [Yersinia pestis D182038]
gi|384140155|ref|YP_005522857.1| peptide chain release factor 1 [Yersinia pestis A1122]
gi|384414801|ref|YP_005624163.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420546884|ref|ZP_15044827.1| peptide chain release factor 1 [Yersinia pestis PY-01]
gi|420552212|ref|ZP_15049589.1| peptide chain release factor 1 [Yersinia pestis PY-02]
gi|420557724|ref|ZP_15054439.1| peptide chain release factor 1 [Yersinia pestis PY-03]
gi|420563234|ref|ZP_15059309.1| peptide chain release factor 1 [Yersinia pestis PY-04]
gi|420568276|ref|ZP_15063887.1| peptide chain release factor 1 [Yersinia pestis PY-05]
gi|420571504|ref|ZP_15066829.1| peptide chain release factor 1 [Yersinia pestis PY-06]
gi|420579222|ref|ZP_15073808.1| peptide chain release factor 1 [Yersinia pestis PY-07]
gi|420584590|ref|ZP_15078681.1| peptide chain release factor 1 [Yersinia pestis PY-08]
gi|420589716|ref|ZP_15083292.1| peptide chain release factor 1 [Yersinia pestis PY-09]
gi|420595094|ref|ZP_15088136.1| peptide chain release factor 1 [Yersinia pestis PY-10]
gi|420600716|ref|ZP_15093145.1| peptide chain release factor 1 [Yersinia pestis PY-11]
gi|420606201|ref|ZP_15098078.1| peptide chain release factor 1 [Yersinia pestis PY-12]
gi|420611553|ref|ZP_15102899.1| peptide chain release factor 1 [Yersinia pestis PY-13]
gi|420616942|ref|ZP_15107642.1| peptide chain release factor 1 [Yersinia pestis PY-14]
gi|420622246|ref|ZP_15112358.1| peptide chain release factor 1 [Yersinia pestis PY-15]
gi|420627346|ref|ZP_15116984.1| peptide chain release factor 1 [Yersinia pestis PY-16]
gi|420632462|ref|ZP_15121598.1| peptide chain release factor 1 [Yersinia pestis PY-19]
gi|420637672|ref|ZP_15126269.1| peptide chain release factor 1 [Yersinia pestis PY-25]
gi|420643199|ref|ZP_15131285.1| peptide chain release factor 1 [Yersinia pestis PY-29]
gi|420648419|ref|ZP_15136032.1| peptide chain release factor 1 [Yersinia pestis PY-32]
gi|420654054|ref|ZP_15141096.1| peptide chain release factor 1 [Yersinia pestis PY-34]
gi|420659541|ref|ZP_15146027.1| peptide chain release factor 1 [Yersinia pestis PY-36]
gi|420664834|ref|ZP_15150762.1| peptide chain release factor 1 [Yersinia pestis PY-42]
gi|420669754|ref|ZP_15155234.1| peptide chain release factor 1 [Yersinia pestis PY-45]
gi|420675110|ref|ZP_15160105.1| peptide chain release factor 1 [Yersinia pestis PY-46]
gi|420680701|ref|ZP_15165170.1| peptide chain release factor 1 [Yersinia pestis PY-47]
gi|420685984|ref|ZP_15169888.1| peptide chain release factor 1 [Yersinia pestis PY-48]
gi|420691166|ref|ZP_15174463.1| peptide chain release factor 1 [Yersinia pestis PY-52]
gi|420696954|ref|ZP_15179533.1| peptide chain release factor 1 [Yersinia pestis PY-53]
gi|420708227|ref|ZP_15188955.1| peptide chain release factor 1 [Yersinia pestis PY-55]
gi|420713641|ref|ZP_15193802.1| peptide chain release factor 1 [Yersinia pestis PY-56]
gi|420719099|ref|ZP_15198550.1| peptide chain release factor 1 [Yersinia pestis PY-58]
gi|420724634|ref|ZP_15203352.1| peptide chain release factor 1 [Yersinia pestis PY-59]
gi|420730241|ref|ZP_15208368.1| peptide chain release factor 1 [Yersinia pestis PY-60]
gi|420735271|ref|ZP_15212922.1| peptide chain release factor 1 [Yersinia pestis PY-61]
gi|420740746|ref|ZP_15217848.1| peptide chain release factor 1 [Yersinia pestis PY-63]
gi|420746268|ref|ZP_15222610.1| peptide chain release factor 1 [Yersinia pestis PY-64]
gi|420751884|ref|ZP_15227512.1| peptide chain release factor 1 [Yersinia pestis PY-65]
gi|420754437|ref|ZP_15229815.1| peptide chain release factor 1 [Yersinia pestis PY-66]
gi|420762907|ref|ZP_15236764.1| peptide chain release factor 1 [Yersinia pestis PY-71]
gi|420768119|ref|ZP_15241463.1| peptide chain release factor 1 [Yersinia pestis PY-72]
gi|420773168|ref|ZP_15246009.1| peptide chain release factor 1 [Yersinia pestis PY-76]
gi|420778683|ref|ZP_15250894.1| peptide chain release factor 1 [Yersinia pestis PY-88]
gi|420784280|ref|ZP_15255799.1| peptide chain release factor 1 [Yersinia pestis PY-89]
gi|420789521|ref|ZP_15260462.1| peptide chain release factor 1 [Yersinia pestis PY-90]
gi|420795021|ref|ZP_15265415.1| peptide chain release factor 1 [Yersinia pestis PY-91]
gi|420800077|ref|ZP_15269955.1| peptide chain release factor 1 [Yersinia pestis PY-92]
gi|420805467|ref|ZP_15274824.1| peptide chain release factor 1 [Yersinia pestis PY-93]
gi|420810766|ref|ZP_15279604.1| peptide chain release factor 1 [Yersinia pestis PY-94]
gi|420816343|ref|ZP_15284619.1| peptide chain release factor 1 [Yersinia pestis PY-95]
gi|420821619|ref|ZP_15289378.1| peptide chain release factor 1 [Yersinia pestis PY-96]
gi|420826718|ref|ZP_15293945.1| peptide chain release factor 1 [Yersinia pestis PY-98]
gi|420832416|ref|ZP_15299092.1| peptide chain release factor 1 [Yersinia pestis PY-99]
gi|420837288|ref|ZP_15303497.1| peptide chain release factor 1 [Yersinia pestis PY-100]
gi|420842457|ref|ZP_15308181.1| peptide chain release factor 1 [Yersinia pestis PY-101]
gi|420848104|ref|ZP_15313264.1| peptide chain release factor 1 [Yersinia pestis PY-102]
gi|420853614|ref|ZP_15318025.1| peptide chain release factor 1 [Yersinia pestis PY-103]
gi|420858966|ref|ZP_15322653.1| peptide chain release factor 1 [Yersinia pestis PY-113]
gi|421763506|ref|ZP_16200301.1| peptide chain release factor 1 [Yersinia pestis INS]
gi|20139332|sp|Q8ZEX8.1|RF1_YERPE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361639|sp|Q1C854.1|RF1_YERPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361640|sp|Q1CJK1.1|RF1_YERPN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223619|sp|A4TJN7.1|RF1_YERPP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166977371|sp|A7FIG1.1|RF1_YERP3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238687250|sp|A9QZ08.1|RF1_YERPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238688460|sp|B1JM85.1|RF1_YERPY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238691366|sp|B2K2Z0.1|RF1_YERPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|21959139|gb|AAM85849.1|AE013831_12 peptide chain release factor RF-1 [Yersinia pestis KIM10+]
gi|45436531|gb|AAS62085.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus
str. 91001]
gi|108775310|gb|ABG17829.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Nepal516]
gi|108779310|gb|ABG13368.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Antiqua]
gi|115347739|emb|CAL20654.1| peptide chain release factor 1 [Yersinia pestis CO92]
gi|145210092|gb|ABP39499.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis
Pestoides F]
gi|149292464|gb|EDM42538.1| peptide chain release factor 1 [Yersinia pestis CA88-4125]
gi|152958846|gb|ABS46307.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP
31758]
gi|162354441|gb|ABX88389.1| peptide chain release factor 1 [Yersinia pestis Angola]
gi|165913193|gb|EDR31816.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921639|gb|EDR38836.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991672|gb|EDR43973.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207620|gb|EDR52100.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962115|gb|EDR58136.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167049069|gb|EDR60477.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056264|gb|EDR66033.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|169750944|gb|ACA68462.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII]
gi|186698400|gb|ACC89029.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+]
gi|229680836|gb|EEO76931.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516]
gi|229689112|gb|EEO81177.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693765|gb|EEO83814.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229702201|gb|EEO90220.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A]
gi|262361967|gb|ACY58688.1| peptide chain release factor 1 [Yersinia pestis D106004]
gi|262365894|gb|ACY62451.1| peptide chain release factor 1 [Yersinia pestis D182038]
gi|270339381|gb|EFA50158.1| peptide chain release factor 1 [Yersinia pestis KIM D27]
gi|294354371|gb|ADE64712.1| peptide chain release factor 1 [Yersinia pestis Z176003]
gi|320015305|gb|ADV98876.1| peptide chain release factor RF-1 [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342855284|gb|AEL73837.1| peptide chain release factor 1 [Yersinia pestis A1122]
gi|391426442|gb|EIQ88623.1| peptide chain release factor 1 [Yersinia pestis PY-01]
gi|391428162|gb|EIQ90172.1| peptide chain release factor 1 [Yersinia pestis PY-02]
gi|391429322|gb|EIQ91187.1| peptide chain release factor 1 [Yersinia pestis PY-03]
gi|391441982|gb|EIR02421.1| peptide chain release factor 1 [Yersinia pestis PY-04]
gi|391443654|gb|EIR03949.1| peptide chain release factor 1 [Yersinia pestis PY-05]
gi|391452162|gb|EIR11594.1| peptide chain release factor 1 [Yersinia pestis PY-06]
gi|391459059|gb|EIR17866.1| peptide chain release factor 1 [Yersinia pestis PY-07]
gi|391460160|gb|EIR18887.1| peptide chain release factor 1 [Yersinia pestis PY-08]
gi|391462382|gb|EIR20903.1| peptide chain release factor 1 [Yersinia pestis PY-09]
gi|391475090|gb|EIR32319.1| peptide chain release factor 1 [Yersinia pestis PY-10]
gi|391476904|gb|EIR33983.1| peptide chain release factor 1 [Yersinia pestis PY-11]
gi|391477324|gb|EIR34360.1| peptide chain release factor 1 [Yersinia pestis PY-12]
gi|391490933|gb|EIR46538.1| peptide chain release factor 1 [Yersinia pestis PY-13]
gi|391492041|gb|EIR47544.1| peptide chain release factor 1 [Yersinia pestis PY-15]
gi|391494270|gb|EIR49523.1| peptide chain release factor 1 [Yersinia pestis PY-14]
gi|391506610|gb|EIR60514.1| peptide chain release factor 1 [Yersinia pestis PY-16]
gi|391507444|gb|EIR61272.1| peptide chain release factor 1 [Yersinia pestis PY-19]
gi|391511902|gb|EIR65269.1| peptide chain release factor 1 [Yersinia pestis PY-25]
gi|391522310|gb|EIR74705.1| peptide chain release factor 1 [Yersinia pestis PY-29]
gi|391524873|gb|EIR77051.1| peptide chain release factor 1 [Yersinia pestis PY-34]
gi|391525975|gb|EIR78066.1| peptide chain release factor 1 [Yersinia pestis PY-32]
gi|391537918|gb|EIR88764.1| peptide chain release factor 1 [Yersinia pestis PY-36]
gi|391540531|gb|EIR91149.1| peptide chain release factor 1 [Yersinia pestis PY-42]
gi|391542428|gb|EIR92886.1| peptide chain release factor 1 [Yersinia pestis PY-45]
gi|391555740|gb|EIS04884.1| peptide chain release factor 1 [Yersinia pestis PY-46]
gi|391556214|gb|EIS05312.1| peptide chain release factor 1 [Yersinia pestis PY-47]
gi|391557529|gb|EIS06519.1| peptide chain release factor 1 [Yersinia pestis PY-48]
gi|391571032|gb|EIS18437.1| peptide chain release factor 1 [Yersinia pestis PY-52]
gi|391571625|gb|EIS18950.1| peptide chain release factor 1 [Yersinia pestis PY-53]
gi|391583983|gb|EIS29573.1| peptide chain release factor 1 [Yersinia pestis PY-55]
gi|391587103|gb|EIS32318.1| peptide chain release factor 1 [Yersinia pestis PY-56]
gi|391599199|gb|EIS42846.1| peptide chain release factor 1 [Yersinia pestis PY-58]
gi|391600425|gb|EIS43957.1| peptide chain release factor 1 [Yersinia pestis PY-60]
gi|391602121|gb|EIS45456.1| peptide chain release factor 1 [Yersinia pestis PY-59]
gi|391615016|gb|EIS56829.1| peptide chain release factor 1 [Yersinia pestis PY-61]
gi|391615624|gb|EIS57370.1| peptide chain release factor 1 [Yersinia pestis PY-63]
gi|391620710|gb|EIS61837.1| peptide chain release factor 1 [Yersinia pestis PY-64]
gi|391627189|gb|EIS67428.1| peptide chain release factor 1 [Yersinia pestis PY-65]
gi|391638398|gb|EIS77205.1| peptide chain release factor 1 [Yersinia pestis PY-71]
gi|391640919|gb|EIS79408.1| peptide chain release factor 1 [Yersinia pestis PY-72]
gi|391650447|gb|EIS87730.1| peptide chain release factor 1 [Yersinia pestis PY-76]
gi|391650717|gb|EIS87973.1| peptide chain release factor 1 [Yersinia pestis PY-66]
gi|391655028|gb|EIS91809.1| peptide chain release factor 1 [Yersinia pestis PY-88]
gi|391659641|gb|EIS95904.1| peptide chain release factor 1 [Yersinia pestis PY-89]
gi|391663516|gb|EIS99352.1| peptide chain release factor 1 [Yersinia pestis PY-90]
gi|391670852|gb|EIT05852.1| peptide chain release factor 1 [Yersinia pestis PY-91]
gi|391680897|gb|EIT14907.1| peptide chain release factor 1 [Yersinia pestis PY-93]
gi|391682388|gb|EIT16273.1| peptide chain release factor 1 [Yersinia pestis PY-92]
gi|391683016|gb|EIT16828.1| peptide chain release factor 1 [Yersinia pestis PY-94]
gi|391694800|gb|EIT27429.1| peptide chain release factor 1 [Yersinia pestis PY-95]
gi|391698233|gb|EIT30558.1| peptide chain release factor 1 [Yersinia pestis PY-96]
gi|391699509|gb|EIT31696.1| peptide chain release factor 1 [Yersinia pestis PY-98]
gi|391709435|gb|EIT40614.1| peptide chain release factor 1 [Yersinia pestis PY-99]
gi|391715585|gb|EIT46111.1| peptide chain release factor 1 [Yersinia pestis PY-100]
gi|391716294|gb|EIT46756.1| peptide chain release factor 1 [Yersinia pestis PY-101]
gi|391726709|gb|EIT56024.1| peptide chain release factor 1 [Yersinia pestis PY-102]
gi|391729970|gb|EIT58898.1| peptide chain release factor 1 [Yersinia pestis PY-103]
gi|391735058|gb|EIT63254.1| peptide chain release factor 1 [Yersinia pestis PY-113]
gi|411176407|gb|EKS46427.1| peptide chain release factor 1 [Yersinia pestis INS]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA EEL +A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQDDIEAAEMML----DDLEMREMAQEELKIAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEIIAKISGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|398974412|ref|ZP_10685039.1| peptide chain release factor 1 [Pseudomonas sp. GM25]
gi|398141614|gb|EJM30530.1| peptide chain release factor 1 [Pseudomonas sp. GM25]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L + +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 35 FRAYSKEYAELEPVVQGYKKLLGVQSDLEGAQALLKDS--DPDMREMAVEEVREAKELLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 TLESDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A I G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARIEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 213 EREAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|323702617|ref|ZP_08114279.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM
574]
gi|333924798|ref|YP_004498378.1| peptide chain release factor 1 [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532436|gb|EGB22313.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM
574]
gi|333750359|gb|AEF95466.1| Peptide chain release factor 1 [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 356
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 181/270 (67%), Gaps = 9/270 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + LE ++ PE A A++ + K L + + + + + + +++
Sbjct: 1 MFAKLQALEDKFEQLEGQISDPEIIADQAKWKQLVKAHADLTEVVDVFRQYKKVRSDLEE 60
Query: 123 LKSLIYECSED--KDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
K ++ E E ++M+++ EEL +E E++L+ LLL PKD DE++ I+E+R
Sbjct: 61 SKLMLEEKLEPDFREMVELEIEELSKRKEELEQKLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGGEEA+LFA D+F+MY R++++KGW+ E++ E+DL G+KE + + G G Y LKF
Sbjct: 117 GTGGEEAALFAGDLFRMYSRFAERKGWRTEIIDANETDLGGFKEITFVVEGKGAYSTLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D+RID + + G GGQ N
Sbjct: 177 ESGVHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIEINPNDIRIDLFCASGPGGQCVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
TT SAVR+THIPTG+ +S QDE+SQH KD
Sbjct: 237 TTQSAVRITHIPTGIVVSCQDEKSQHKNKD 266
>gi|332295519|ref|YP_004437442.1| peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
gi|332178622|gb|AEE14311.1| Peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
Length = 361
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 181/270 (67%), Gaps = 4/270 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKE 119
K+ E +L + R + L++ E +P++ ++E +L + ++ +EL +
Sbjct: 3 FKVFEGNILKLINRYKEINELLSSLEIINNPSKLISLSQEKAELEEVVNNYNELNKLKNY 62
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
+ LK L + SED+++ +A EE + + L+S LL +LPKD DE++ ILE+RA
Sbjct: 63 LSDLKEL--KNSEDEEIKALAEEEFQVVEKNIENLESKLLNFILPKDPLDEKNIILEIRA 120
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
G GGEEA+LFA ++ +MY RY+++K K E++ + E+ + G KEA +I G +Y +LKF
Sbjct: 121 GAGGEEAALFASELLRMYLRYAERKNAKTEILSINETGIGGIKEAIISIKGKRIYSRLKF 180
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG HRVQRVP TE GR+HTS +VA+LP+ADE+D+ + +DL+IDT+R+GG+GGQH N
Sbjct: 181 ESGTHRVQRVPETESGGRIHTSTATVAVLPEADEIDITIDEKDLKIDTFRAGGAGGQHVN 240
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T+SAVR+TH+PTG+ ++ QDERSQ K+
Sbjct: 241 KTDSAVRITHLPTGIVVACQDERSQFQNKE 270
>gi|58038522|ref|YP_190486.1| peptide chain release factor 1 [Gluconobacter oxydans 621H]
gi|81557234|sp|Q5FUR9.1|RF1_GLUOX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|58000936|gb|AAW59830.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Gluconobacter
oxydans 621H]
Length = 353
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 178/262 (67%), Gaps = 7/262 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L++ E + ++++ ++E +L + I ++ +++ G ++L
Sbjct: 8 ERIVA---RSEEVQALMSSGELTGEDFTRLSQEYAELEPVVASIQAWKSAEEQKAGAQAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ +D +M ++A EL LQ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 L----DDPEMRELAQMELAEIEATLPDLQHALRLALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA ++F Y R+S++ GW+FEV+ E+++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAELFDAYRRFSEQNGWRFEVMEYAENEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTVNDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQHMVK 328
VTH+P+G+ +++Q+E+SQH K
Sbjct: 241 VTHMPSGIVVAMQEEKSQHKNK 262
>gi|94986447|ref|YP_594380.1| peptide chain release factor 1 [Lawsonia intracellularis
PHE/MN1-00]
gi|442555263|ref|YP_007365088.1| peptide chain release factor 1 [Lawsonia intracellularis N343]
gi|119361555|sp|Q1MSG7.1|RF1_LAWIP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|94730696|emb|CAJ54058.1| Protein chain release factor A [Lawsonia intracellularis
PHE/MN1-00]
gi|441492710|gb|AGC49404.1| peptide chain release factor 1 [Lawsonia intracellularis N343]
Length = 359
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/193 (56%), Positives = 143/193 (74%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D D+ +MA EE+ E L+ L LLPKD DE++ +LE+RAGTGGEEA+LFA D
Sbjct: 69 DPDIQEMALEEIKKLELELTHLEYELKILLLPKDPLDEKNILLEIRAGTGGEEAALFAAD 128
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++K WK E++ ++SD G+KE A I G VY +LKFESG HRVQRVP T
Sbjct: 129 LFRMYCRYAEKMHWKVEIMSQSDSDTGGFKEIIALIQGDNVYSRLKFESGTHRVQRVPTT 188
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSA +VA+LP+A++VD+ +R E+LR D +RS G GGQ NTT+SAVRVTHIPT
Sbjct: 189 ESQGRIHTSAATVAVLPEAEDVDIEIRPEELRFDVFRSSGPGGQSVNTTDSAVRVTHIPT 248
Query: 313 GMTISIQDERSQH 325
G+ ++ QDE+SQH
Sbjct: 249 GIVVTCQDEKSQH 261
>gi|397165406|ref|ZP_10488857.1| peptide chain release factor 1 [Enterobacter radicincitans DSM
16656]
gi|396093063|gb|EJI90622.1| peptide chain release factor 1 [Enterobacter radicincitans DSM
16656]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 165/237 (69%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQKVQEDIETAQMML----DDPEMREMAQEELRDAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQHLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|420200809|ref|ZP_14706449.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
gi|394267553|gb|EJE12140.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
Length = 358
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 175/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++++RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIKIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|423124391|ref|ZP_17112070.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5250]
gi|376399836|gb|EHT12449.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5250]
Length = 393
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 165/238 (69%), Gaps = 5/238 (2%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ ++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++
Sbjct: 67 KFRALSREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKG 122
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 123 EQMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIM 182
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 183 SANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEL 242
Query: 272 DEVDVR-LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 243 PEAEMPDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 300
>gi|357031644|ref|ZP_09093587.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
gi|356414874|gb|EHH68518.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
Length = 353
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 173/259 (66%), Gaps = 7/259 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A RS ++ L+ + + E++ ++E +L + I + +K G SL
Sbjct: 8 ERIVA---RSEEIQALMASGDIAGEEFTALSREYAELEPVVTSIRAWQEAEKARKGALSL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ ED +M ++A EL RLQ L +LLP+D ADER ILEVR GG+EA
Sbjct: 65 L----EDPEMRELAQAELDEVNASLPRLQHDLRLALLPRDAADERSAILEVRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA ++F Y R++++ GW+FEV+ E+++ G KE A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAELFDAYRRFAEQNGWRFEVMEYAENEVAGLKEGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQH 325
+TH+PTG+ +++Q+E+SQH
Sbjct: 241 ITHLPTGVVVAMQEEKSQH 259
>gi|86570230|gb|ABD04787.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris HaA2]
Length = 373
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELC 145
E + +Y + +EL +L + + R + E+ + L+ + + D +M MA E
Sbjct: 38 EVAANDYVRITRELSELNPLVEAVKAYREVRDELGDIDDLLEDPATDPEMRAMAEAERDA 97
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L E +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +G
Sbjct: 98 LDAHREDLIQQIRV-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQG 156
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
W EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 157 WSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATV 216
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 217 AVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 276
>gi|56552405|ref|YP_163244.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260753918|ref|YP_003226811.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384412513|ref|YP_005621878.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|81598182|sp|Q5NMC7.1|RF1_ZYMMO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56543979|gb|AAV90133.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258553281|gb|ACV76227.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335932887|gb|AEH63427.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 358
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 145/197 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D ++ MA EEL + L SLLP+D ADER ILE+RAGTGG+EA+LF
Sbjct: 70 DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAGTGGDEAALFGG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY RY+++ GW+ E++ + ++L GYKE +I+G GV+ +LKFESG+HRVQRVP+
Sbjct: 130 DLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFESGVHRVQRVPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ NTT+SAVR+THIP
Sbjct: 190 TESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMVK 328
+G+ +S QDE+SQH K
Sbjct: 250 SGIVVSQQDEKSQHKNK 266
>gi|325273244|ref|ZP_08139524.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
gi|324101621|gb|EGB99187.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D DM +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDMREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|423120771|ref|ZP_17108455.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5246]
gi|376395401|gb|EHT08047.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5246]
Length = 360
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D +E R Q +I+ + ++ +D +M +MA EEL A + + ++
Sbjct: 39 SREYAQLSDVARCYTEWRQVQDDIETAQMML----DDAEMREMAQEELRDAKAKSEEMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 RLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
N DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|162138527|ref|YP_483698.2| peptide chain release factor 1 [Rhodopseudomonas palustris HaA2]
gi|119361590|sp|Q2J423.2|RF1_RHOP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 361
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELC 145
E + +Y + +EL +L + + R + E+ + L+ + + D +M MA E
Sbjct: 26 EVAANDYVRITRELSELNPLVEAVKAYREVRDELGDIDDLLEDPATDPEMRAMAEAERDA 85
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
L E +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +G
Sbjct: 86 LDAHREDLIQQIRV-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQG 144
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
W EV+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +V
Sbjct: 145 WSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATV 204
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A+LP+ +EVDV ++ +DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 205 AVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
>gi|420254153|ref|ZP_14757170.1| peptide chain release factor 1 [Burkholderia sp. BT03]
gi|398049844|gb|EJL42242.1| peptide chain release factor 1 [Burkholderia sp. BT03]
Length = 398
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 147/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D+ ++L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 105 ELLSDASMKDFAEEEIRAARDQMEKLEGELQKMLLPKDPNDERNIFLEIRAGTGGDESAL 164
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 165 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGDAAYSKLKFESGGHRVQR 224
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 225 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 284
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 285 THLPTGIVVECQDDRSQHKNKD 306
>gi|254428729|ref|ZP_05042436.1| peptide chain release factor 1 [Alcanivorax sp. DG881]
gi|196194898|gb|EDX89857.1| peptide chain release factor 1 [Alcanivorax sp. DG881]
Length = 361
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 148/200 (74%), Gaps = 7/200 (3%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A D + R++ L L K +LPKD D + LEVRAGTGG+EA++F
Sbjct: 73 DPDMREMGAEE---ARDAQARMEELAEELQKLMLPKDPRDGANVFLEVRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY +Y+ ++GWK E+V +E + GYKE A + G GVY ++KFESG HRVQRV
Sbjct: 130 AGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+ +RNEDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEQLGDITIRNEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 250 HLPTGVVVECQDERSQHKNK 269
>gi|77460969|ref|YP_350476.1| peptide chain release factor 1 [Pseudomonas fluorescens Pf0-1]
gi|119361582|sp|Q3K6W9.1|RF1_PSEPF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77384972|gb|ABA76485.1| peptide chain release factor RF-1 [Pseudomonas fluorescens Pf0-1]
Length = 360
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L + +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 35 FRAYSKEYAELEPVVQGYKKLLGVQGDLEGAQALLKDS--DPDMREMAVEEVREAKELLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 TLESDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A I G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARIEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 213 EREAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|298529663|ref|ZP_07017066.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511099|gb|EFI35002.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
Length = 356
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/193 (55%), Positives = 146/193 (75%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D ++ ++A EL +E+ RL+ L L+P D D+++ ILE+RAGTGGEEA+LFA D
Sbjct: 69 DPEIRELAQAELETLQEEKDRLEEDLKIQLVPSDPLDDKNIILEIRAGTGGEEAALFAAD 128
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++ WK EV+ + E+ G KE A+ISG VY +LK+ESG+HRVQRVP T
Sbjct: 129 LFRMYFRYAEERSWKVEVLNMQETGTGGIKEVIASISGKKVYSRLKYESGVHRVQRVPET 188
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GRVHTSAV+VAILP+A+EVDV + DLR+D +R+ G GGQ NTT+SAVR+THIPT
Sbjct: 189 ESQGRVHTSAVTVAILPEAEEVDVNIEPNDLRVDVFRASGPGGQSVNTTDSAVRITHIPT 248
Query: 313 GMTISIQDERSQH 325
G+ +S QDE+SQH
Sbjct: 249 GLVVSCQDEKSQH 261
>gi|397677429|ref|YP_006518967.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395398118|gb|AFN57445.1| Peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 358
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/197 (54%), Positives = 145/197 (73%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D ++ MA EEL + L SLLP+D ADER ILE+RAGTGG+EA+LF
Sbjct: 70 DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAGTGGDEAALFGG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY RY+++ GW+ E++ + ++L GYKE +I+G GV+ +LKFESG+HRVQRVP+
Sbjct: 130 DLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFESGVHRVQRVPV 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA +VA+LP+A+EVDV + DLRID +RS G GGQ NTT+SAVR+THIP
Sbjct: 190 TESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNTTDSAVRITHIP 249
Query: 312 TGMTISIQDERSQHMVK 328
+G+ +S QDE+SQH K
Sbjct: 250 SGIVVSQQDEKSQHKNK 266
>gi|409408061|ref|ZP_11256505.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
gi|386432517|gb|EIJ45344.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
Length = 355
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 63 ELLSDPDMKAFAQEEIDAARARMEALELDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I+G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIAGFGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QD+RSQH K
Sbjct: 243 THLPTGIVVECQDDRSQHKNK 263
>gi|294669176|ref|ZP_06734256.1| peptide chain release factor 1 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308808|gb|EFE50051.1| peptide chain release factor 1 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 358
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 164/250 (65%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K +E ++ + + Q ++ + ++ D +M D
Sbjct: 22 LLGSPEATSDMGNYRKLTREHAEITPVVETFHQYMQAQNDMAEAQEML----SDPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
ATEE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 ATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYSR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVEC 257
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 258 QDGRSQHANK 267
>gi|418326961|ref|ZP_12938136.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|418413304|ref|ZP_12986546.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
gi|420164484|ref|ZP_14671213.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|420169228|ref|ZP_14675831.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|420186327|ref|ZP_14692398.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|365224067|gb|EHM65337.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|394231589|gb|EJD77215.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|394231691|gb|EJD77315.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|394252544|gb|EJD97576.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|410879191|gb|EKS27042.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
Length = 358
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPEMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|149204050|ref|ZP_01881018.1| peptide chain release factor 1 [Roseovarius sp. TM1035]
gi|149142492|gb|EDM30537.1| peptide chain release factor 1 [Roseovarius sp. TM1035]
Length = 417
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 162/235 (68%), Gaps = 5/235 (2%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+ ++ +E +LR + I R ++DG ++++ D +M D+A EE+ +
Sbjct: 95 GDIARLGREYSELRPVVEEIRAYRLAVNDLDGARAMLA----DPEMRDLAREEVAVLEAR 150
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ L +LLP+D+AD R ILE+R GTGGEEA+LF D+ +MY+RYS+ +GW FEV
Sbjct: 151 LPEMEQRLQLALLPRDEADARPAILEIRPGTGGEEAALFGADLMRMYQRYSEARGWSFEV 210
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +S+L G +E I G GV+ +LKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 211 IEEQQSELGGIRELVVRIGGEGVFARLKFESGVHRVQRVPETESGGRIHTSAATVAVLPE 270
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
A++VD+++ DLRIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 271 AEDVDIQINANDLRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 324
>gi|307719604|ref|YP_003875136.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
gi|306533329|gb|ADN02863.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
Length = 357
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 154/206 (74%), Gaps = 8/206 (3%)
Query: 127 IYECSEDKDMLDMATEELCLAIDE----EKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ E +D ++ +MA EE+ D+ E+RL+ LL+ P D D ++ ILE+RAGTG
Sbjct: 66 VLEEEDDHELKEMAREEIKALEDQILHTEQRLKLLLV----PPDPLDGKNIILEIRAGTG 121
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+++MY RY+++KGWK E++ +E++L G++E AISG VYG L+FESG
Sbjct: 122 GEEAALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFESG 181
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQR+P+TE GR+HTSAV+VA+LP+ +E +V +R ED+R+D +RS G GGQ NTT+
Sbjct: 182 GHRVQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTD 241
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVR+TH+PTG+ ++ QDE+SQH K
Sbjct: 242 SAVRITHLPTGLVVTCQDEKSQHKNK 267
>gi|110833384|ref|YP_692243.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2]
gi|119361504|sp|Q0VS77.1|RF1_ALCBS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110646495|emb|CAL15971.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2]
Length = 361
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/200 (55%), Positives = 150/200 (75%), Gaps = 7/200 (3%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A D ++R+++L L K +LPKD D + LEVRAGTGG+EA++F
Sbjct: 73 DADMREMGAEE---ARDAQERMEALAAELQKLMLPKDPRDGANVFLEVRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY +Y+ ++GWK E+V +E + GYKE A + G GVY ++KFESG HRVQRV
Sbjct: 130 AGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+++R EDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEDLGDIKIRTEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 250 HLPTGVVVECQDERSQHKNK 269
>gi|375261422|ref|YP_005020592.1| peptide chain release factor 1 [Klebsiella oxytoca KCTC 1686]
gi|397658524|ref|YP_006499226.1| peptide chain release factor 1 [Klebsiella oxytoca E718]
gi|402840452|ref|ZP_10888916.1| peptide chain release factor 1 [Klebsiella sp. OBRC7]
gi|423103536|ref|ZP_17091238.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5242]
gi|365910900|gb|AEX06353.1| peptide chain release factor 1 [Klebsiella oxytoca KCTC 1686]
gi|376385178|gb|EHS97899.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5242]
gi|394346815|gb|AFN32936.1| Peptide chain release factor 1 [Klebsiella oxytoca E718]
gi|402285669|gb|EJU34150.1| peptide chain release factor 1 [Klebsiella sp. OBRC7]
Length = 360
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|423108930|ref|ZP_17096625.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5243]
gi|423114890|ref|ZP_17102581.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5245]
gi|376383124|gb|EHS95852.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5243]
gi|376383765|gb|EHS96492.1| peptide chain release factor 1 [Klebsiella oxytoca 10-5245]
Length = 360
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|345302468|ref|YP_004824370.1| peptide chain release factor 1 [Rhodothermus marinus SG0.5JP17-172]
gi|345111701|gb|AEN72533.1| Peptide chain release factor 1 [Rhodothermus marinus SG0.5JP17-172]
Length = 360
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 172/262 (65%), Gaps = 15/262 (5%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
I+RR + ++ PE A P ++ +E LR + I E + L+ LI
Sbjct: 10 IKRRYEEVTQALSDPEVAADPKRLAELGREHASLRAVVEAIEAYERLLAEQESLRELIRT 69
Query: 130 CSEDKDMLDMATEELCL------AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
S D +++ MA EL A++E+ RL+ L+P+D+ D R+ I+E+RAGTGG
Sbjct: 70 ES-DPELVRMARHELEELEERLPAVEEDLRLR------LIPQDEMDRRNAIVEIRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F+MY R++++KGWK EV+ + + G+KE ++ G VYG +K+ESG+
Sbjct: 123 DEAALFAGDLFRMYSRFAERKGWKLEVLDASPGTVGGFKEIIFSLKGPDVYGTMKYESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA SV +LP+A+EVDV +R EDLRID +RS G GGQH N T S
Sbjct: 183 HRVQRVPATESQGRIHTSAASVVVLPEAEEVDVEIRPEDLRIDVFRSSGPGGQHVNRTES 242
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+THIPTG+ +S QDE+SQH
Sbjct: 243 AVRITHIPTGIVVSCQDEKSQH 264
>gi|304415271|ref|ZP_07395967.1| peptide chain release factor 1 [Candidatus Regiella insecticola
LSR1]
gi|304282877|gb|EFL91344.1| peptide chain release factor 1 [Candidatus Regiella insecticola
LSR1]
Length = 360
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L+D + Q++I+ K ++ +D +M ++A +EL A +
Sbjct: 35 FRTLSREYAQLKDISLCFKQWDGLQEDIETAKKML----DDLEMRELAQDELKEAKIRSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLP+D DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK EV+
Sbjct: 91 ALEQKLQVLLLPQDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAETRRWKMEVIN 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ E + GYKE I+G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P
Sbjct: 151 INEGEKGGYKEVITKITGNGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPVLP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E +V + + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 ETEVLEISDNDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|421077196|ref|ZP_15538167.1| Peptide chain release factor 1 [Pelosinus fermentans JBW45]
gi|392524584|gb|EIW47739.1| Peptide chain release factor 1 [Pelosinus fermentans JBW45]
Length = 355
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 170/269 (63%), Gaps = 7/269 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R LENL++ P A+ AE+ K K KL + ++++ R ++ G
Sbjct: 1 MLDKLQAIEDRQLELENLISDPSVIANMAEWQKHTKAHSKL---LPIVAKFREYKEVQQG 57
Query: 123 LKSLIYECSE--DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
+ + ++ D D M T EL + + L L LLPKD DE+ I+E+R G
Sbjct: 58 IADTLEMLNDKLDSDFRQMVTAELSDLKAQNEVLSEELRILLLPKDPNDEKSVIVEIRGG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
GG+EA+LFA D+F+MY RY++ +GW+ E++ DL G+KE I G G Y +LKFE
Sbjct: 118 AGGDEAALFAGDLFRMYTRYAETQGWRTELLDANAPDLGGFKEVVFTIDGDGAYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
SG+HRVQRVP TE GR+HTS V+VA+LP+A+EVDV + DLRIDTY + G+GGQH N
Sbjct: 178 SGVHRVQRVPTTESGGRIHTSTVTVAVLPEAEEVDVVINQNDLRIDTYCASGAGGQHVNK 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T SAVR+ H+PTG+ + QDE+SQ KD
Sbjct: 238 TESAVRIVHLPTGIVVQCQDEKSQLKNKD 266
>gi|322421625|ref|YP_004200848.1| peptide chain release factor 1 [Geobacter sp. M18]
gi|320128012|gb|ADW15572.1| peptide chain release factor 1 [Geobacter sp. M18]
Length = 359
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 178/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ +E R LE+L++ PE A+ E+ K +KE L + + E + +I
Sbjct: 3 MFDRIADLETRFEELESLLSDPEVLANQGEFRKLSKEHSGLAELIAAYREYKKVLADIGD 62
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ E D++M +MA EL + ++L+S + LLPKD D+++ +LE+RAGTG
Sbjct: 63 NRELLKEP--DQEMREMAQAELESLEERREQLESEIKVLLLPKDPNDDKNVVLEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+F+MY R+++ W+ EV+ +ES+ G+KE A + G GV+ KLK+ESG
Sbjct: 121 GDESALFAGDLFRMYSRFAEVNRWRVEVISASESEKGGFKEVIALVEGAGVFAKLKYESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTSA +VA++P+A++VD+ + DL+ID YRS G+GGQH NTT+
Sbjct: 181 THRVQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTD 240
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG ++ Q+ERSQ
Sbjct: 241 SAVRITHIPTGTVVACQEERSQ 262
>gi|148981991|ref|ZP_01816579.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3]
gi|417949871|ref|ZP_12593001.1| peptide chain release factor 1 [Vibrio splendidus ATCC 33789]
gi|145960679|gb|EDK26023.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3]
gi|342807595|gb|EGU42781.1| peptide chain release factor 1 [Vibrio splendidus ATCC 33789]
Length = 362
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 170/253 (67%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q +++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQNKFRALSKEYSQLEEVTKCFQAYQQAQDDLEAAEDMAQE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD DER+C LE+RAG GG+EA +FA ++F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDERNCFLEIRAGAGGDEAGIFAGNLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ +S+ GYKE A +SG GVYG +KFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNDSEQGGYKEMIAKVSGEGVYGVMKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++P+ E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMPEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|254455525|ref|ZP_05068954.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082527|gb|EDZ59953.1| peptide chain release factor 1 [Candidatus Pelagibacter sp.
HTCC7211]
Length = 357
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 182/267 (68%), Gaps = 4/267 (1%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
IK +E+ +L + + LE ++ + +++ +KE + + + + + +K+
Sbjct: 4 IKTIEELIL----KHSTLEKDLSSRDLEKKVFAEKSKEYSDISEVIVSAKKYLSYEKDKK 59
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L++++ + S D+++ +A EL DE +R + L LLPKD+AD+++ I+E+RAGT
Sbjct: 60 ELENILNDNSVDEELKKLADTELLELKDEYERNEKKLKLFLLPKDEADKKNAIIEIRAGT 119
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG EASLFA D+FKMYE+ S KK W E++ ++ SD G KE A+I G +Y LK+ES
Sbjct: 120 GGLEASLFASDLFKMYEKVSHKKKWALELISISRSDAGGLKEVIASIKGTNIYSTLKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ DLRID +R+GG GGQ NTT
Sbjct: 180 GVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINEADLRIDVFRAGGPGGQSVNTT 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+THIPTG+T+S QDE+SQH K
Sbjct: 240 DSAVRITHIPTGLTVSQQDEKSQHKNK 266
>gi|83591213|ref|YP_431222.1| peptide chain release factor 1 [Moorella thermoacetica ATCC 39073]
gi|119361560|sp|Q2RFW0.1|RF1_MOOTA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83574127|gb|ABC20679.1| bacterial peptide chain release factor 1 (bRF-1) [Moorella
thermoacetica ATCC 39073]
Length = 356
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 171/262 (65%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IE R L L+ PE A P + K + L D + R E+
Sbjct: 1 MLEKLEQIEARYEELGRLMGDPEVIADPEQLQKHARAHAALEDIVTTFRRYRQVSNELAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K+++ E +D++ ++ E+ E++RL+ L LLPKD DE+D I+E+RAG G
Sbjct: 61 DKAMLEE-EKDREFQELLKAEIERLTGEQERLEQELKILLLPKDPNDEKDIIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY+RY++KK W+ E++ ++L G+KE + G GVY +LKFESG
Sbjct: 120 GEEAALFAGDLFRMYQRYAEKKRWRTEIISSHPTELGGFKEIIFQVEGQGVYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+A+EVDV ++ EDLR+D + S G GGQ NTT
Sbjct: 180 VHRVQRIPTTESGGRIHTSTATVAVLPEAEEVDVEIKPEDLRVDIFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+PTG+ +S QDE+SQ
Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQ 261
>gi|117621299|ref|YP_857649.1| peptide chain release factor 1 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166223525|sp|A0KMZ8.1|RF1_AERHH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|117562706|gb|ABK39654.1| peptide chain release factor 1 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 362
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 166/250 (66%), Gaps = 5/250 (2%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ ++ +P+ A Y +E +L D +H + R ++ +D + ++ E +D D+
Sbjct: 19 VQAMLGEPDVAADQDRYRALTREYAQLEDIVHAFQQFRQAEENLDATRQMLEE--DDADL 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EEL LA + + L LLP+D D+ +C LE+RAG GG+EA++FA D+F+M
Sbjct: 77 REMAQEELPLAKATFEEQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++++GW+ +V + + GYKE A + G VYG+LKFESG HRVQRVP TE G
Sbjct: 137 YSRYAERQGWRVSIVSCNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA+LP+ E + + + +L+IDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RVHTSACTVAVLPEVPEAEQIEINPSELKIDTFRASGAGGQHVNKTDSAIRITHLPTGLV 256
Query: 316 ISIQDERSQH 325
+ QDERSQH
Sbjct: 257 VECQDERSQH 266
>gi|424660682|ref|ZP_18097929.1| peptide chain release factor 1 [Vibrio cholerae HE-16]
gi|408050250|gb|EKG85420.1| peptide chain release factor 1 [Vibrio cholerae HE-16]
Length = 362
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDADMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|423195701|ref|ZP_17182284.1| peptide chain release factor 1 [Aeromonas hydrophila SSU]
gi|404633113|gb|EKB29678.1| peptide chain release factor 1 [Aeromonas hydrophila SSU]
Length = 362
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 166/250 (66%), Gaps = 5/250 (2%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
++ ++ +P+ A Y +E +L D +H + R ++ ++ + ++ E +D D+
Sbjct: 19 VQAMLGEPDVAADQDRYRALTREYAQLEDIVHAFQQFRQAEENLEATRQMLEE--DDADL 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EEL LA + + L LLP+D D+ +C LE+RAG GG+EA++FA D+F+M
Sbjct: 77 REMAQEELPLAKATFEEQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y RY++++GW+ +V + + GYKE A + G VYG+LKFESG HRVQRVP TE G
Sbjct: 137 YSRYAERQGWRVSIVSCNDGEHGGYKEVIAKVEGEHVYGRLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA+LP+ E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+
Sbjct: 197 RVHTSACTVAVLPEVPEAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLV 256
Query: 316 ISIQDERSQH 325
+ QDERSQH
Sbjct: 257 VECQDERSQH 266
>gi|354724247|ref|ZP_09038462.1| peptide chain release factor 1 [Enterobacter mori LMG 25706]
Length = 360
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|27468634|ref|NP_765271.1| peptide chain release factor 1 [Staphylococcus epidermidis ATCC
12228]
gi|57867593|ref|YP_189289.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251812171|ref|ZP_04826644.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876474|ref|ZP_06285340.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|293366082|ref|ZP_06612770.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646882|ref|ZP_12296734.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|417656917|ref|ZP_12306595.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|417660256|ref|ZP_12309845.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|417909017|ref|ZP_12552767.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|417912470|ref|ZP_12556162.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|417913921|ref|ZP_12557582.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|418604057|ref|ZP_13167424.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|418607532|ref|ZP_13170762.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|418609372|ref|ZP_13172525.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|418613195|ref|ZP_13176211.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|418617908|ref|ZP_13180794.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|418622347|ref|ZP_13185099.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|418623907|ref|ZP_13186601.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|418627641|ref|ZP_13190213.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|418629960|ref|ZP_13192453.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|418663751|ref|ZP_13225260.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|419768484|ref|ZP_14294606.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|419771604|ref|ZP_14297655.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166561|ref|ZP_14673245.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|420171719|ref|ZP_14678254.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|420173643|ref|ZP_14680134.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|420182089|ref|ZP_14688231.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|420186950|ref|ZP_14692974.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|420195935|ref|ZP_14701719.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|420202831|ref|ZP_14708419.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|420207939|ref|ZP_14713424.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|420210298|ref|ZP_14715727.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|420215230|ref|ZP_14720501.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|420216735|ref|ZP_14721933.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|420220977|ref|ZP_14725932.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|420223650|ref|ZP_14728545.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|420226177|ref|ZP_14730999.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|420228591|ref|ZP_14733340.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|420230977|ref|ZP_14735654.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|420233583|ref|ZP_14738191.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|420236013|ref|ZP_14740544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|421608826|ref|ZP_16050038.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
gi|32171533|sp|Q8CNI7.1|RF1_STAES RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71153098|sp|Q5HMA4.1|RF1_STAEQ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27316181|gb|AAO05315.1|AE016749_261 peptide chain release factor RF-1 [Staphylococcus epidermidis ATCC
12228]
gi|57638251|gb|AAW55039.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251804268|gb|EES56925.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|281294726|gb|EFA87254.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|291319805|gb|EFE60163.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726142|gb|EGG62614.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|329734173|gb|EGG70491.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|329735695|gb|EGG71978.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|341650682|gb|EGS74498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|341654379|gb|EGS78126.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|341654657|gb|EGS78396.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|374404386|gb|EHQ75360.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|374405853|gb|EHQ76764.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|374407774|gb|EHQ78622.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|374411289|gb|EHQ82006.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|374816631|gb|EHR80832.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|374817169|gb|EHR81355.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|374826941|gb|EHR90816.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|374829087|gb|EHR92901.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|374829151|gb|EHR92964.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|374832479|gb|EHR96189.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|383359848|gb|EID37258.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|383361102|gb|EID38484.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233568|gb|EJD79169.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|394236834|gb|EJD82337.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|394239680|gb|EJD85115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|394250553|gb|EJD95735.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|394256916|gb|EJE01840.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|394262536|gb|EJE07298.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|394269010|gb|EJE13555.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|394274959|gb|EJE19354.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|394276532|gb|EJE20870.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|394282510|gb|EJE26703.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|394285427|gb|EJE29506.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|394287148|gb|EJE31115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|394291414|gb|EJE35226.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|394292663|gb|EJE36403.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|394294625|gb|EJE38296.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|394295860|gb|EJE39496.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|394299865|gb|EJE43393.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|394301649|gb|EJE45104.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|406655479|gb|EKC81906.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
Length = 358
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|419956812|ref|ZP_14472878.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606970|gb|EIM36174.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
GS1]
Length = 360
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|393769853|ref|ZP_10358370.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
gi|392724675|gb|EIZ82023.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
Length = 361
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 157/229 (68%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL L + I R + L+++I E D +M +A +E A + +
Sbjct: 37 SRELSDLDPVVDAIRTYRAALANLADLEAMIDEPGTDPEMRALAADEKPEAQERLEETHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILEVRAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEVRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G++E A + G GV+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TVGGFREVVAEVKGKGVFARLKFESGAHRVQRVPNTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH
Sbjct: 217 VVNDADLKIDTMRAQGAGGQHVNKTESAIRITHLPTGIVVFVQEERSQH 265
>gi|242241525|ref|ZP_04795970.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|416128250|ref|ZP_11597255.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|418328423|ref|ZP_12939536.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614626|ref|ZP_13177589.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|418633631|ref|ZP_13196039.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|420174286|ref|ZP_14680739.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|420178547|ref|ZP_14684877.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|420181341|ref|ZP_14687544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|420191022|ref|ZP_14696959.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|420193551|ref|ZP_14699402.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|420204945|ref|ZP_14710483.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
gi|242235068|gb|EES37379.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|319399600|gb|EFV87855.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|365232022|gb|EHM73037.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|374819516|gb|EHR83638.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|374838969|gb|EHS02502.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|394245220|gb|EJD90537.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|394246270|gb|EJD91531.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|394246689|gb|EJD91943.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|394258120|gb|EJE03012.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|394259818|gb|EJE04649.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|394271666|gb|EJE16155.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
Length = 358
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|395794825|ref|ZP_10474141.1| peptide chain release factor 1 [Pseudomonas sp. Ag1]
gi|421138189|ref|ZP_15598259.1| peptide chain release factor 1 [Pseudomonas fluorescens BBc6R8]
gi|395340986|gb|EJF72811.1| peptide chain release factor 1 [Pseudomonas sp. Ag1]
gi|404510612|gb|EKA24512.1| peptide chain release factor 1 [Pseudomonas fluorescens BBc6R8]
Length = 360
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 38 YSKEYAEVEPI---VGTYKQLLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKDKLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGVHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|390443938|ref|ZP_10231723.1| peptide chain release factor 1 [Nitritalea halalkaliphila LW7]
gi|389665711|gb|EIM77175.1| peptide chain release factor 1 [Nitritalea halalkaliphila LW7]
Length = 329
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 169/262 (64%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A++ R + L+ QPEA Y+K KE ++L + L + + +
Sbjct: 1 MLDKLQALKERFEDVGQLIIQPEAMADMQGYTKLTKEYKELEKIVQLYERYKLVTENLRN 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ E +D D +MA E+ + L+ + + L+PKD D +DCILEVRAGTG
Sbjct: 61 AKQLL-ETEKDPDFREMAKAEIEELRPQVGELEEEIKQQLVPKDPNDSKDCILEVRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K+ WK V+ +T GYKE + ISG VYGK+KFESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFCEKQNWKLTVLDLTFGTSGGYKEIISTISGDDVYGKMKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+ DEV+V L D+R DTY S G GGQ NTT
Sbjct: 180 VHRVQRVPATETQGRVHTSAATVAVLPEMDEVEVDLNMNDIRKDTYCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH PTG+ ++ QDE+SQ
Sbjct: 240 SAVRLTHNPTGIVVTCQDEKSQ 261
>gi|373465770|ref|ZP_09557214.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
gi|371759372|gb|EHO48110.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
Length = 361
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 176/260 (67%), Gaps = 2/260 (0%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A ++ K +KE LRD++ + + +++ K
Sbjct: 7 KLQAVVDRYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAFKKYQKVTGQLNDDKE 66
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ D++++L+ L LLPKD D+++ I+E+ GG+E
Sbjct: 67 MLREKIDDPDLETMVKDEISDYTDQKEKLEDELKVMLLPKDPNDDKNIIMEIHGAAGGDE 126
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D+F MY +Y++++GW+ EVV E+++ G+KE + I+G VY KLK+E+G HR
Sbjct: 127 ASLFAADLFSMYSKYAERQGWQVEVVDKNETEVGGFKEIALMITGDKVYSKLKYENGAHR 186
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 247 RMTHLPTGIVVAMQDERSQQ 266
>gi|334342212|ref|YP_004547192.1| peptide chain release factor 1 [Desulfotomaculum ruminis DSM 2154]
gi|334093566|gb|AEG61906.1| peptide chain release factor 1 [Desulfotomaculum ruminis DSM 2154]
Length = 356
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 173/267 (64%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M ++ A+E + LE V+ PE A+ +K + ++ D ++ R +K + L+
Sbjct: 1 MFDKLQALEDKYQVLEGQVSDPEVM-ADRAKWQQMVKAHADLTDVVEAFRQYKKTLSDLE 59
Query: 125 S--LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L+ E + D +M E+ ++ L+ L LLPKD DE++ I+E+R GTG
Sbjct: 60 ENRLMLEDKLEPDFQEMVELEIGELESRKEELEQKLKILLLPKDPNDEKNVIVEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY+++KGW+ E++ E+DL G+KE + + G G + LKFESG
Sbjct: 120 GDEAALFAGDLFRMYCRYAERKGWRTEIIDANETDLGGFKEITFVVEGKGAFSNLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + D+RID + + G GGQ NTT
Sbjct: 180 VHRVQRVPATESGGRIHTSAATVAVLPEAEEVDIEVNANDIRIDLFCASGPGGQCVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIPTG+ +S QDE+SQH KD
Sbjct: 240 SAVRITHIPTGIVVSCQDEKSQHKNKD 266
>gi|319790214|ref|YP_004151847.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
gi|317114716|gb|ADU97206.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
Length = 365
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 137/171 (80%)
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L K L+PKD DE++ ILE+RAG GGEEA+LFA D+F+MY RY+++KGWK E++ +
Sbjct: 95 LEGELKKLLIPKDPNDEKNVILEIRAGAGGEEAALFAQDLFRMYCRYAERKGWKVEILSM 154
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E+ L G KE A ISG G Y +LK+ESG+HRVQR+P+TE GR+HTS +VAILP+A+E
Sbjct: 155 NETGLGGIKEVVATISGKGAYSRLKYESGVHRVQRIPVTESGGRIHTSTATVAILPEAEE 214
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
V++ ++ DL+IDTYRS G+GGQH NTT+SAVR+TH+PTG+ ++ +ERSQ
Sbjct: 215 VEIEIKESDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCSNERSQ 265
>gi|145298193|ref|YP_001141034.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361594|ref|ZP_12962246.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166223526|sp|A4SK64.1|RF1_AERS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|142850965|gb|ABO89286.1| Protein chain release factor A [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687180|gb|EHI51765.1| peptide chain release factor 1 [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 362
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 157/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R ++ ++ K ++ E +D D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRFRQAEENLEATKLMLEE--DDADLREMAQEELPLAKSTLE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRISIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 EAEQIEINANDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|453331298|dbj|GAC86877.1| peptide chain release factor 1 [Gluconobacter thailandicus NBRC
3255]
Length = 353
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 174/259 (67%), Gaps = 7/259 (2%)
Query: 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+R++A R+ ++ L++ E E+++ ++E +L + I + +K+ +G ++L
Sbjct: 8 ERIVA---RAEEIQALMSSGEMGGEEFTRLSREYAELEPVVASIQAWQAAEKQREGARAL 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ D +M ++A EL L+ L +LLPKD ADER ILE+R GG+EA
Sbjct: 65 LA----DPEMKELAQAELEDIEAHIPELEHNLRIALLPKDAADERSAILEIRPAAGGDEA 120
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
LFA +F Y R+S++ GW+FEV+ E+++ G K+ A ISG V+ +LK+ESG+HRV
Sbjct: 121 GLFAAQLFDAYRRFSEQNGWRFEVMEYAENEVAGLKDGMATISGRSVFARLKYESGVHRV 180
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS V+VA+LP+A+EVDV + ++DLRID YR+ G+GGQH N T SAVR
Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAVR 240
Query: 307 VTHIPTGMTISIQDERSQH 325
+THIPTG+ +++Q+E+SQH
Sbjct: 241 ITHIPTGVVVAMQEEKSQH 259
>gi|421724824|ref|ZP_16164031.1| peptide chain release factor 1 [Klebsiella oxytoca M5al]
gi|410374393|gb|EKP29067.1| peptide chain release factor 1 [Klebsiella oxytoca M5al]
Length = 360
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A ++ ++++
Sbjct: 39 SREYAQLSDVARCYTDWRQLQDDIEAAQMML----DDPEMREMAQEELREAKEKGEQMEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ E
Sbjct: 95 QLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSANEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDISPSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|381393905|ref|ZP_09919623.1| peptide chain release factor 1 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379330177|dbj|GAB54756.1| peptide chain release factor 1 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 361
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + E + Q++I +I E ED +M +MA EEL A +++++
Sbjct: 39 SKEYSQLEEVVKQFGEFQGAQRDIASALEMIQE--EDAEMREMAQEELKNAKKNSEQIET 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLP+D D+ DC LE+RAG GG+EA++FA D+F+MY RY++ +GW+ EV+ +E
Sbjct: 97 DLQILLLPRDPDDDNDCFLEIRAGAGGDEAAIFAGDMFRMYSRYAETQGWRLEVMSASEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
D GYKE A ISG G YG LKFESG HRVQRVP TE GR+HTSA +VA+LP E
Sbjct: 157 DHGGYKEIIAQISGNGPYGILKFESGGHRVQRVPDTESQGRIHTSACTVAVLPVVPESQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYR+ G+GGQH N T+SA+R+THIP+G+ + QDERSQH
Sbjct: 217 IEINPSDLRVDTYRASGAGGQHVNKTDSAIRLTHIPSGVVVECQDERSQH 266
>gi|56707338|ref|YP_169234.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669808|ref|YP_666365.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC198]
gi|254370015|ref|ZP_04986022.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874173|ref|ZP_05246883.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716536|ref|YP_005304872.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725219|ref|YP_005317405.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TI0902]
gi|385793928|ref|YP_005830334.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis NE061598]
gi|421754782|ref|ZP_16191747.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700075]
gi|61214577|sp|Q5NIA8.1|RF1_FRATT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361541|sp|Q14JR1.1|RF1_FRAT1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54112995|gb|AAV29131.1| NT02FT0305 [synthetic construct]
gi|56603830|emb|CAG44801.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320141|emb|CAL08184.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC198]
gi|151568260|gb|EDN33914.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840172|gb|EET18608.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158463|gb|ADA77854.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis NE061598]
gi|377826668|gb|AFB79916.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TI0902]
gi|377828213|gb|AFB78292.1| Peptide chain release factor 1 [Francisella tularensis subsp.
tularensis TIGB03]
gi|409090449|gb|EKM90467.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700075]
Length = 361
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 176/260 (67%), Gaps = 11/260 (4%)
Query: 77 ACLENLVNQPEASPAEYSKAN--KELRKLRD----SMHLISELRTKQKEIDGL--KSLIY 128
A L++L+ + E A S+A + K RD HL ++ +K L K Y
Sbjct: 7 AKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKKYTQALEDKQAAY 66
Query: 129 ECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
E +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGTGG+EA
Sbjct: 67 EMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGTGGDEA 126
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
S+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFESG HRV
Sbjct: 127 SIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFESGAHRV 186
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
QRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N T+SA+
Sbjct: 187 QRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNKTDSAI 246
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+THIPTG+ + QD+RSQH
Sbjct: 247 RITHIPTGVVVECQDQRSQH 266
>gi|402825861|ref|ZP_10875108.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
gi|402260601|gb|EJU10717.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
Length = 356
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 137/168 (81%)
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L ++LP+D AD R +LE+RAGTGG+EA+LFA D+++MYE+Y+ ++GW+ E+V SD
Sbjct: 94 LAIAMLPRDAADVRPAMLEIRAGTGGDEAALFAADLYRMYEKYAAEQGWRVEMVSANASD 153
Query: 218 LRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVR 277
+ G+KE A ++G GV+ KLKFESG+HRVQRVP+TE GR+HTSA +VA+LP+ EVDV
Sbjct: 154 VGGFKEVVANVTGSGVFAKLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEPTEVDVA 213
Query: 278 LRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ ++DL+ID YR+ G+GGQH NTT+SAVR+TH+P+G+ ++ QDERSQH
Sbjct: 214 IEDKDLKIDIYRASGAGGQHVNTTDSAVRITHLPSGIVVTCQDERSQH 261
>gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille]
gi|166223564|sp|A6SUF6.1|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151280214|gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille]
Length = 360
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 158/239 (66%), Gaps = 5/239 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +E +L + L R +I + ++ D DM + A EE+ A +
Sbjct: 35 YRKMTREHAELGPLVALYGNYRQADSDIQDAQGML----SDPDMKEFAQEEIAAAKTRME 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L K LLPKD D+R+ LE+RAGTGG+EA+LFA D+ +MY R++++ W+ E+V
Sbjct: 91 QLEIDLQKMLLPKDPNDDRNIFLEIRAGTGGDEAALFAGDLLRMYSRFAERNRWQIEMVS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ S++ GYKE I G G Y KLKFESG HRVQRVP TE GR+HTSA +VAI+P+AD
Sbjct: 151 ESASEVGGYKEVIVRIIGFGAYSKLKFESGGHRVQRVPATETQGRIHTSACTVAIMPEAD 210
Query: 273 EV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS 330
EV DV + DLRIDTYR+ G+GGQH N T+SAVR+THIPTG+ + QD+RSQH K S
Sbjct: 211 EVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKAS 269
>gi|417821512|ref|ZP_12468126.1| peptide chain release factor 1 [Vibrio cholerae HE39]
gi|422911020|ref|ZP_16945648.1| peptide chain release factor 1 [Vibrio cholerae HE-09]
gi|423956678|ref|ZP_17735232.1| peptide chain release factor 1 [Vibrio cholerae HE-40]
gi|423985466|ref|ZP_17738783.1| peptide chain release factor 1 [Vibrio cholerae HE-46]
gi|340039143|gb|EGR00118.1| peptide chain release factor 1 [Vibrio cholerae HE39]
gi|341632662|gb|EGS57522.1| peptide chain release factor 1 [Vibrio cholerae HE-09]
gi|408657222|gb|EKL28309.1| peptide chain release factor 1 [Vibrio cholerae HE-40]
gi|408663808|gb|EKL34658.1| peptide chain release factor 1 [Vibrio cholerae HE-46]
Length = 362
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDADMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|392963311|ref|ZP_10328737.1| Peptide chain release factor 1 [Pelosinus fermentans DSM 17108]
gi|421056869|ref|ZP_15519786.1| peptide chain release factor 1 [Pelosinus fermentans B4]
gi|421060491|ref|ZP_15522960.1| Peptide chain release factor 1 [Pelosinus fermentans B3]
gi|421066915|ref|ZP_15528456.1| Peptide chain release factor 1 [Pelosinus fermentans A12]
gi|421069310|ref|ZP_15530482.1| Peptide chain release factor 1 [Pelosinus fermentans A11]
gi|392438049|gb|EIW15911.1| peptide chain release factor 1 [Pelosinus fermentans B4]
gi|392450330|gb|EIW27383.1| Peptide chain release factor 1 [Pelosinus fermentans A11]
gi|392451135|gb|EIW28129.1| Peptide chain release factor 1 [Pelosinus fermentans DSM 17108]
gi|392452501|gb|EIW29441.1| Peptide chain release factor 1 [Pelosinus fermentans A12]
gi|392456829|gb|EIW33563.1| Peptide chain release factor 1 [Pelosinus fermentans B3]
Length = 355
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/268 (47%), Positives = 167/268 (62%), Gaps = 5/268 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEI-D 121
M ++ AIE R LENL++ P A+ AE+ K K KL + E + Q+ I D
Sbjct: 1 MLDKLQAIEDRQLELENLISDPSVIANMAEWQKHTKAHSKLLPIVAKFREYKEVQQGIAD 60
Query: 122 GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ L + D D M T EL + L L LLPKD DE+ I+E+R G
Sbjct: 61 ALEMLNDKL--DNDFRQMVTAELSDLKARNEVLNEELRILLLPKDPNDEKSVIVEIRGGA 118
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY RY++ +GW+ E++ DL G+KE I G G Y +LKFES
Sbjct: 119 GGDEAALFAGDLFRMYTRYAETQGWRTELLDANAPDLGGFKEVVFTIDGDGAYSRLKFES 178
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS V+VA+LP+A+EVDV + DLRIDTY + G+GGQH N T
Sbjct: 179 GVHRVQRVPTTESGGRIHTSTVTVAVLPEAEEVDVVINQNDLRIDTYCASGAGGQHVNKT 238
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+ H+PTG+ + QDE+SQ KD
Sbjct: 239 ESAVRIVHLPTGIVVQCQDEKSQLKNKD 266
>gi|365853802|ref|ZP_09394067.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
gi|363711960|gb|EHL95666.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
Length = 361
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 174/257 (67%), Gaps = 2/257 (0%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R L L++ PE A ++ K +KE LRD++ ++ + K++D + ++
Sbjct: 10 AVVDRYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAYNKYKKVSKQLDDDEEMLR 69
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E +D D+ M +E+ D++++L+ L LLPKD D+++ I+E+ GG+E SL
Sbjct: 70 EKIDDADLESMVKDEIADFKDQKQKLEDQLKVMLLPKDPNDDKNIIMEIHGAAGGDEGSL 129
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F MY +Y++++GW+ E++ E+++ G+KE I+G VY KLK+E+G HRVQR
Sbjct: 130 FAADLFSMYSKYAERQGWQVEIIDKNETEVGGFKEIVLMITGDKVYSKLKYENGAHRVQR 189
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP+TE +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAVR+T
Sbjct: 190 VPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
Query: 309 HIPTGMTISIQDERSQH 325
H+PTG+ +++QDERSQ
Sbjct: 250 HLPTGIVVAMQDERSQQ 266
>gi|126725348|ref|ZP_01741190.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150]
gi|126704552|gb|EBA03643.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150]
Length = 421
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 194/322 (60%), Gaps = 34/322 (10%)
Query: 11 HLGALRQLESSSSISH-----RNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIM 65
HLGA +++ S I+ ++ + H VQ A A P M+ D + +
Sbjct: 33 HLGAEKRMFHSKMIASMPEITKSQICHLTLAVQSAIADP-----------MVPMDKLYQI 81
Query: 66 EQRVLAIERRSACLE--NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
R +E + A E N+V E S+ EL+ + D I +T ++ID
Sbjct: 82 TARFEFLEAKLASGETDNIV--------ELSREYSELKPVADQ---IMAFQTLVQDIDAA 130
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ +D +M ++A EEL D ++ + LLPKD AD R I+E+R GTGG
Sbjct: 131 EAML----DDPEMRELAAEELKELRDSLPDAENAIKLVLLPKDTADARPAIIEIRPGTGG 186
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+ +MY+RY++ GWKFE++ S+L G KE A I G V+GKLKFESG+
Sbjct: 187 DEAALFAGDLLRMYQRYAESNGWKFEIIEEQVSELGGIKEIIANIKGTNVFGKLKFESGV 246
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ + DLRIDT R+ G+GGQH NTT+S
Sbjct: 247 HRVQRVPTTESGGRIHTSAATVAVLPEAEEVDLDIPASDLRIDTMRASGAGGQHVNTTDS 306
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+TH+PTGM I + E+SQH
Sbjct: 307 AVRITHLPTGM-IVVSMEKSQH 327
>gi|40062641|gb|AAR37562.1| peptide chain release factor 1 [uncultured marine bacterium 313]
Length = 358
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/203 (51%), Positives = 149/203 (73%)
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
L +I + DK+M+ + EL + +++ + +L LLPKD+AD ++ I+E+RAGTG
Sbjct: 61 LDKIIEDKKSDKEMIQLVKSELNELLKKKQSYEKILKVYLLPKDEADSKNAIVEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G EA+LF D++KMYE+ K W FE++ +++S+ G+KE I G +Y LKFESG
Sbjct: 121 GLEATLFVADLYKMYEKVCLNKKWSFEIINLSKSEAGGFKEVILLIKGANIYSFLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+A+EVDV++ ++DLRID +RS G+GGQ NTT+
Sbjct: 181 VHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKIEDKDLRIDVFRSTGAGGQSVNTTD 240
Query: 303 SAVRVTHIPTGMTISIQDERSQH 325
SAVR+THIPTG+ ++ QDE+SQH
Sbjct: 241 SAVRITHIPTGIVVTNQDEKSQH 263
>gi|332285704|ref|YP_004417615.1| peptide chain release factor 1 [Pusillimonas sp. T7-7]
gi|330429657|gb|AEC20991.1| peptide chain release factor 1 [Pusillimonas sp. T7-7]
Length = 355
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 175/268 (65%), Gaps = 7/268 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ + R ++ L+ +PE + Y K ++E +L + + + + +I
Sbjct: 1 MRDRLEQLAHRLIEVDALLAEPEIAGDMDRYRKISRERAELDPVVAVFNSFLATEGDIKT 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ ++ D DM MA EEL L ++ ++L++ L LLP+D D R LE+RAGTG
Sbjct: 61 AQEMM----ADPDMRGMAEEELMLGKEKLEQLEADLQVLLLPRDPDDSRSVYLEIRAGTG 116
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+ +MY RY++ W+ E+V ++S++ GYKE A + G GVYG+LKFESG
Sbjct: 117 GDESALFAGDLLRMYTRYAENNSWRVELVSASDSEIGGYKEVIARVDGDGVYGRLKFESG 176
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA+LP+ADE D+ + DLRIDT+R+ G+GGQH N T
Sbjct: 177 AHRVQRVPATETQGRIHTSACTVAVLPEADEQSDIVINPADLRIDTFRASGAGGQHINKT 236
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SAVRVTH+PTG+ + QD+RSQH KD
Sbjct: 237 DSAVRVTHLPTGLVVECQDDRSQHRNKD 264
>gi|339485721|ref|YP_004700249.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|431800788|ref|YP_007227691.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
gi|338836564|gb|AEJ11369.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|430791553|gb|AGA71748.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
Length = 360
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLESQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 SVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|313893571|ref|ZP_07827140.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441842|gb|EFR60265.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str.
F0412]
Length = 360
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/275 (42%), Positives = 183/275 (66%), Gaps = 15/275 (5%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L ++ + RT +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEIIARQDEWRKLTRQHSQLSET---VETFRTYK 53
Query: 118 KEIDGLKS---LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCI 174
K + GL +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I
Sbjct: 54 KVLAGLDEAMEVIEDKSLDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNII 113
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+E+R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY
Sbjct: 114 IEIRGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVEGENVY 173
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
K+KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + +DL+IDTYR+ G+G
Sbjct: 174 SKMKFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
GQH N T SAVR+TH+PTG+ ++ QD+RSQ KD
Sbjct: 234 GQHINKTESAVRITHLPTGIVVACQDQRSQLKNKD 268
>gi|295698659|ref|YP_003603314.1| peptide chain release factor 1 [Candidatus Riesia pediculicola
USDA]
gi|291157243|gb|ADD79688.1| peptide chain release factor 1 [Candidatus Riesia pediculicola
USDA]
Length = 346
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 159/229 (69%), Gaps = 5/229 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
+E KL + ++ + +KEI+ +K LI D+++ +A EEL I+ +K++++
Sbjct: 40 REYTKLFKIISNFKKIESIRKEIEEIKKLIL----DEELKSLALEELNKLINLKKKVENR 95
Query: 158 LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD 217
L L PKD D +DC LE++AGTGG EA++FA D+F+MY +Y++ WK E++ + E +
Sbjct: 96 LRNQLTPKDQNDRKDCFLEIKAGTGGSEAAIFAKDLFRMYCKYAESCSWKVEIISINEIE 155
Query: 218 L-RGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
GYKE A ISG VY KLKFESG HRVQR+P TE GR+HTS+ VAIL + D ++
Sbjct: 156 SGSGYKEIIAKISGKEVYRKLKFESGGHRVQRIPETESRGRIHTSSCKVAILLKVDASEI 215
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++ D+RIDT+RS G+GGQH NTTNSA+RVTHIPTG+++ QDERSQH
Sbjct: 216 KINQNDIRIDTFRSSGAGGQHVNTTNSAIRVTHIPTGISVECQDERSQH 264
>gi|40062805|gb|AAR37689.1| peptide chain release factor 1 [uncultured marine bacterium 440]
Length = 359
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 163/237 (68%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S ++ K +KE + + ++ + +KE L+ +I + D++M+ +A +EL +
Sbjct: 27 SKKDFVKKSKEYSSIGEVINQAKGYLSFEKEKIELEKIIEDKESDEEMVQLAKKELNELL 86
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
++ K + +L LLPKD AD ++ ILE+RAGTGG+EA LF D++KMYE+ W F
Sbjct: 87 EKNKTHEKILRIYLLPKDGADAKNAILEIRAGTGGDEAGLFVADLYKMYEKVCLNNKWSF 146
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +++S G+KE I G +Y LK+E G+HRVQRVP TE GRVHTSA +VA+L
Sbjct: 147 EIISISKSGAGGFKEVILLIKGNNIYSFLKYERGVHRVQRVPKTETQGRVHTSAATVAVL 206
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A+EVD++++ +DLRID YRS GSGGQ NTT+SAVR+THIPTG+ ++ QDE+SQH
Sbjct: 207 PEAEEVDIKIQEKDLRIDVYRSTGSGGQSVNTTDSAVRITHIPTGIVVTNQDEKSQH 263
>gi|398876015|ref|ZP_10631175.1| peptide chain release factor 1 [Pseudomonas sp. GM67]
gi|398882394|ref|ZP_10637362.1| peptide chain release factor 1 [Pseudomonas sp. GM60]
gi|398198936|gb|EJM85886.1| peptide chain release factor 1 [Pseudomonas sp. GM60]
gi|398205307|gb|EJM92091.1| peptide chain release factor 1 [Pseudomonas sp. GM67]
Length = 360
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 164/234 (70%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + D+ +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPIVDAY---KQLLKVQSDLEGAQALLKD--NDPDMREMAVEEVREAKEQLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 EIEASLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|335041017|ref|ZP_08534135.1| Peptide chain release factor 1 [Caldalkalibacillus thermarum
TA2.A1]
gi|334179167|gb|EGL81814.1| Peptide chain release factor 1 [Caldalkalibacillus thermarum
TA2.A1]
Length = 356
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 177/267 (66%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ P + P + +KE +L +++ E + +++
Sbjct: 1 MFDRLRALEDRYEELNRLLSDPAVASDPKKLRDYSKEQSELEETVTCYREYKDVVRQLTD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KS++ E +D ++ +M EE+ + ++++ L+ L LLPKD DE++ I+E+R G
Sbjct: 61 AKSMLEEKLDD-ELREMVKEEIAVLSEKKEALEERLKILLLPKDPNDEKNVIVEIRGAAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA LFA D++KMY RY++ KGWK EV+ +DL GYKE +I+G G Y +LK+ESG
Sbjct: 120 GDEACLFAGDLYKMYTRYAEDKGWKIEVIEAHPNDLGGYKEIIFSINGKGAYSRLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP+TE GR+HTS +VA+LP+A+E+DV + +D+R+D + S G GGQ NTT
Sbjct: 180 AHRVQRVPVTESGGRIHTSTATVAVLPEAEEIDVEIDEKDIRVDVFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIPTG+ +S QDE+SQH K+
Sbjct: 240 SAVRLTHIPTGIVVSCQDEKSQHKNKE 266
>gi|315122704|ref|YP_004063193.1| peptide chain release factor 1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496106|gb|ADR52705.1| peptide chain release factor 1 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 357
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 160/233 (68%), Gaps = 1/233 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +E + + I K+ E L+++I + D + D+A E+ E K
Sbjct: 32 YIKLTEEYAAISPIISKIDIYEKKKGEEQDLRTIIDDQDSDLGIRDLAKAEIGEVEKEIK 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ + LLPKD D++ CILE+RAGTGG EA+LF D+F+MYERY+ + WK E++
Sbjct: 92 ALEYEISCLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYATYQKWKVEILS 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+++D GYKE A ISG GV+ ++KFESG+HRVQRVP TE SGRVHTSA +VA+LP+A+
Sbjct: 152 SSDNDDGGYKEIVATISGNGVFYRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E+DV + ED+RIDT R+ GSGGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 212 EIDVAIATEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQH 263
>gi|254787712|ref|YP_003075141.1| peptide chain release factor 1 [Teredinibacter turnerae T7901]
gi|259585256|sp|C5BSZ6.1|RF1_TERTT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|237684441|gb|ACR11705.1| peptide chain release factor 1 [Teredinibacter turnerae T7901]
Length = 360
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 164/247 (66%), Gaps = 5/247 (2%)
Query: 82 LVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ P+ A ++ KE +L + E RT + I K L+ + D DM +M
Sbjct: 22 LLGDPDIIADQKKFRDLGKEYSELEPVVICYQEYRTVIENIAEAKMLMNDG--DADMREM 79
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL A + + L++ L K LLPKD DE++ LE+RAGTGG+EA++F+ D+F+MY R
Sbjct: 80 AQEELKTAEAQLEPLETQLQKLLLPKDPNDEKNVFLEIRAGTGGDEAAIFSGDLFRMYSR 139
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ GW+ E++ + GYKE + G GVY +LKFESG HRVQRVP TE GR+H
Sbjct: 140 YAERAGWRIEIISENAGEHGGYKELITRVVGQGVYSQLKFESGAHRVQRVPETESQGRIH 199
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VAI+P+ADE +V L DLRIDT+R+ G+GGQH N T+SA+R+THIPTG+ +
Sbjct: 200 TSACTVAIMPEADESEEVELNKGDLRIDTFRASGAGGQHVNKTDSAIRITHIPTGIVVEC 259
Query: 319 QDERSQH 325
QDERSQH
Sbjct: 260 QDERSQH 266
>gi|257464821|ref|ZP_05629192.1| peptide chain release factor 1 [Actinobacillus minor 202]
gi|257450481|gb|EEV24524.1| peptide chain release factor 1 [Actinobacillus minor 202]
Length = 360
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E ++L+ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIEANKAEIEQLEQNLQILLLPKDPNDEYNCFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY++ K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|229917064|ref|YP_002885710.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b]
gi|259585222|sp|C4KYV2.1|RF1_EXISA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229468493|gb|ACQ70265.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b]
Length = 356
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 176/267 (65%), Gaps = 2/267 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ +E R L ++ PE + + + +KE +L +++ + + + +
Sbjct: 1 MFDRLSVLEDRYMQLNEMLADPEVLSDSTKLRQYSKEQAQLEETVQMYRQYKETSQAFKE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KS++ + + D +M ++A EE+ L E K L++ L LLPKD DE++ I+EVR G
Sbjct: 61 AKSMLEDRTLDAEMRELAKEEMNLLEPEVKELEAKLRILLLPKDPNDEKNVIVEVRGAAG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D++KMY R+++++ WK E++ ++L G+KE + I+G G Y KLKFE+G
Sbjct: 121 GDEAALFAGDLYKMYTRFAERQNWKVELIDANYTELGGFKEVTFMINGAGAYSKLKFENG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
HRVQRVP TE GR+HTS +VA+LP+A++V+V + +D+R+DT+ S G GGQ NTT
Sbjct: 181 AHRVQRVPSTESGGRIHTSTATVAVLPEAEDVEVHIDMKDVRVDTFTSSGPGGQSVNTTQ 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIP+G+ +S QDE+SQH KD
Sbjct: 241 SAVRLTHIPSGLVVSCQDEKSQHKNKD 267
>gi|406913012|gb|EKD52501.1| hypothetical protein ACD_62C00003G0011 [uncultured bacterium]
Length = 353
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
+P + + KE +LR+++ E + +E+ KSL+ E +D DM MA EE+
Sbjct: 25 APRDLTAMAKEQARLRETVTTYREYKKNTQELAESKSLL-EKEKDDDMRVMAREEVTKLE 83
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
+ + L L+P D DE++ ILE+RAGTGGEEA LF D+F+MY R++ +GWK
Sbjct: 84 KRQSEFEKKLKLLLIPTDPNDEKNIILEIRAGTGGEEAGLFVADLFRMYTRFADSQGWKI 143
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
++V E+D G+KE A ++G VY KLK+ESGIHRVQRVP TE SGR+HTSAVSVAIL
Sbjct: 144 DIVSSNETDKGGFKEIIAMVTGDRVYSKLKYESGIHRVQRVPDTEASGRIHTSAVSVAIL 203
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A+++++ + DLRID R+GG+GGQH N T SAVR+TH+PT + + D+RSQH
Sbjct: 204 PEAEDIELDIPPTDLRIDVMRAGGAGGQHVNKTESAVRITHLPTNLVVVCMDDRSQH 260
>gi|334124406|ref|ZP_08498415.1| peptide chain release factor RF1 [Enterobacter hormaechei ATCC
49162]
gi|333389405|gb|EGK60571.1| peptide chain release factor RF1 [Enterobacter hormaechei ATCC
49162]
Length = 360
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|441506396|ref|ZP_20988368.1| Peptide chain release factor 1 [Photobacterium sp. AK15]
gi|441425938|gb|ELR63428.1| Peptide chain release factor 1 [Photobacterium sp. AK15]
Length = 363
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 145/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +MA EE+ A E +RL L L+PKD DER+C +E+RAG GG+EA +FA
Sbjct: 73 DDPDMREMAQEEVKEAKSEIERLADELQVLLIPKDPNDERNCFIEIRAGAGGDEAGIFAG 132
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++ +GW+ EV+ +++ GYKE A ++G GVYG LKFESG HRVQRVP
Sbjct: 133 DLFRMYSKYAESRGWRVEVMSANDAEHGGYKEMIAKVNGEGVYGTLKFESGGHRVQRVPA 192
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VAILP+ E ++ + DL+IDT+R+ G+GGQH NTT+SA+R+TH+
Sbjct: 193 TESQGRVHTSACTVAILPEIPEAEIPEINTGDLKIDTFRASGAGGQHVNTTDSAIRITHL 252
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 253 PTGIVVECQDERSQHKNK 270
>gi|408374426|ref|ZP_11172113.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
gi|407765701|gb|EKF74151.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
Length = 361
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 147/200 (73%), Gaps = 7/200 (3%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSL---LLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM +M EE A + E R+ L L K +LP+D D + LEVRAGTGG+EA+LF
Sbjct: 73 DPDMREMGHEE---AREAEARMAELGDELQKLMLPRDPRDGANVFLEVRAGTGGDEAALF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY RY+ + GWK E+V +E + GYKE A + G GVY +LKFESG HRVQRV
Sbjct: 130 AGDLFRMYSRYADRMGWKVELVSASEGEHGGYKEVIARVIGDGVYSRLKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VAI+ +A+++ D+++RNEDLRIDTYRS G+GGQH NTT+SAVR+T
Sbjct: 190 PATESQGRIHTSACTVAIMAEAEDLGDIQIRNEDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 250 HLPTGVVVECQDERSQHKNK 269
>gi|187931103|ref|YP_001891087.1| peptide chain release factor 1 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|238691540|sp|B2SFF6.1|RF1_FRATM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|187712012|gb|ACD30309.1| peptide chain release factor 1 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 361
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|399002460|ref|ZP_10705146.1| peptide chain release factor 1 [Pseudomonas sp. GM18]
gi|398124900|gb|EJM14396.1| peptide chain release factor 1 [Pseudomonas sp. GM18]
Length = 360
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + D+ +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 38 YSKEYAEVEPIVDTY---KQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKERLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEASLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|238919470|ref|YP_002932985.1| peptide chain release factor 1, putative [Edwardsiella ictaluri
93-146]
gi|259585221|sp|C5B814.1|RF1_EDWI9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238869039|gb|ACR68750.1| peptide chain release factor 1, putative [Edwardsiella ictaluri
93-146]
Length = 360
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 159/237 (67%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D H R Q ++ + L+ +D +M DMA EEL A
Sbjct: 35 FRALSREYAQLTDVSHCFLAWRQVQDDLTTAEMLL----DDPEMRDMAQEELKEARGRLA 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLPKD DERDC LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 ELEQQLQILLLPKDPDDERDCFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRIEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A +SG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P
Sbjct: 151 ASEGEHGGYKEVIARVSGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPAVP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ ++ DLRIDTYRS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPQINPADLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|284039842|ref|YP_003389772.1| peptide chain release factor 1 [Spirosoma linguale DSM 74]
gi|283819135|gb|ADB40973.1| peptide chain release factor 1 [Spirosoma linguale DSM 74]
Length = 357
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/256 (47%), Positives = 164/256 (64%), Gaps = 3/256 (1%)
Query: 71 AIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
AI R + + QPEA + + K +KE + L + + +EID K +I
Sbjct: 7 AIRERFNEVAQQIVQPEAVSDQKRFMKLSKEYKDLEKIVVQYQAYQQLLEEIDNAKKII- 65
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D+D +MA EL + + L+ L + L+PKD D ++ ILE+R GTGG+EA++
Sbjct: 66 ATEKDEDFREMAKGELDELLPRRETLEETLKEMLMPKDPNDSKNVILEIRGGTGGDEAAI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY+R+ +K GW+ +V TE GYKE I G VYGKLKFESG+HRVQR
Sbjct: 126 FAGDIFRMYQRFCEKMGWRMSLVDFTEGTSGGYKEIITEIEGEDVYGKLKFESGVHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA SVA+LP+A+EVDV + D+R DT+ S G+GGQ NTT SAVR+T
Sbjct: 186 VPATETQGRIHTSAASVAVLPEAEEVDVEINMNDIRKDTFCSSGAGGQSVNTTYSAVRLT 245
Query: 309 HIPTGMTISIQDERSQ 324
HIPTG+ + QDERSQ
Sbjct: 246 HIPTGLVVQCQDERSQ 261
>gi|218960517|ref|YP_001740292.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans]
gi|167729174|emb|CAO80085.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 355
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 162/234 (69%), Gaps = 18/234 (7%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSL 157
KELR++ + L+ +E++ L+ + D +MLD+ DEE+ LQ
Sbjct: 41 KELREINAAWKHYQTLKKHIEEVNALE----KTENDPEMLDLIK-------DEERSLQQQ 89
Query: 158 L------LKSLL-PKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L LK LL P D D ++ I+E+RAGTGGEEA+LFA D+F+MY Y++ KGWK EV
Sbjct: 90 LEQTELKLKDLLIPADPNDAKNAIVEIRAGTGGEEAALFAADLFRMYSYYAEMKGWKLEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ + +++L GYKE +SG VY ++FESG+HRVQR+P+TE SGR+HTSAV+VA+LP+
Sbjct: 150 ISMNQTELGGYKEIIFQLSGKDVYSYMRFESGVHRVQRIPVTESSGRIHTSAVTVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
A+++D+ ++ DLRID YRS G GGQ NTT+SAVR+TH+PTG+ ++ QDE+SQ
Sbjct: 210 AEDIDIDIQESDLRIDVYRSTGHGGQSVNTTDSAVRITHLPTGIVVTCQDEKSQ 263
>gi|89256990|ref|YP_514352.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica LVS]
gi|115315350|ref|YP_764073.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica OSU18]
gi|134301375|ref|YP_001121343.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156503190|ref|YP_001429255.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368245|ref|ZP_04984265.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica 257]
gi|290954490|ref|ZP_06559111.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica URFT1]
gi|421751108|ref|ZP_16188166.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis AS_713]
gi|421752963|ref|ZP_16189972.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 831]
gi|421756695|ref|ZP_16193597.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700103]
gi|421758565|ref|ZP_16195410.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70102010]
gi|422939253|ref|YP_007012400.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC200]
gi|423051366|ref|YP_007009800.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica F92]
gi|424673831|ref|ZP_18110762.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70001275]
gi|119361542|sp|Q2A1Q0.1|RF1_FRATH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361543|sp|Q0BKE8.1|RF1_FRATO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223558|sp|A7NE96.1|RF1_FRATF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223560|sp|A4IWC1.1|RF1_FRATW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|89144821|emb|CAJ80160.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica LVS]
gi|115130249|gb|ABI83436.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica OSU18]
gi|134049152|gb|ABO46223.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254055|gb|EBA53149.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica 257]
gi|156253793|gb|ABU62299.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407294404|gb|AFT93310.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC200]
gi|409088776|gb|EKM88835.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 831]
gi|409089094|gb|EKM89148.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis AS_713]
gi|409092122|gb|EKM92102.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70102010]
gi|409093356|gb|EKM93303.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 80700103]
gi|417435606|gb|EKT90496.1| peptide chain release factor 1 [Francisella tularensis subsp.
tularensis 70001275]
gi|421952088|gb|AFX71337.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica F92]
Length = 361
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|398992801|ref|ZP_10695762.1| peptide chain release factor 1 [Pseudomonas sp. GM21]
gi|398136257|gb|EJM25349.1| peptide chain release factor 1 [Pseudomonas sp. GM21]
Length = 360
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 AKFRTYSKEYAEVEPIVGTYQQLLKVQSDLEGAQALLKDS--DPDMREMAVEEVREAKEQ 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LIELEASLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|288819151|ref|YP_003433499.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|384129898|ref|YP_005512511.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|288788551|dbj|BAI70298.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|308752735|gb|ADO46218.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
Length = 357
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 183/266 (68%), Gaps = 6/266 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
+E+++ AIE+R ++N ++ + A+++K +K+L+ + + + L + QK+I
Sbjct: 6 LEEKLEAIEKRYEEIQNRLSSQDVIRDRAQFAKLSKDLKDIGEVVDLYRRYKKVQKDIKE 65
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + ++ ++A EE+ EE+R++ L +LPKD+ D R+ ILE+RAG G
Sbjct: 66 AQELL----KSREFEELAKEEIKRLKREEERIEKELKILMLPKDERDSRNVILEIRAGVG 121
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LF D+ MY++Y++++GWKF ++ + L GYKE A I GVG Y +LK+ESG
Sbjct: 122 GEEAALFVADLLNMYQKYAEERGWKFSILSANRTGLGGYKEVIALIEGVGAYSRLKYESG 181
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ DE ++ + +DL+I+T+R+ G+GGQ+ NTT
Sbjct: 182 VHRVQRIPRTESGGRIHTSTATVAVLPEVDETELEINPQDLKIETFRASGAGGQYVNTTE 241
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
+AVRVTHIPTG++++ QDERSQ K
Sbjct: 242 TAVRVTHIPTGISVACQDERSQFQNK 267
>gi|401674994|ref|ZP_10806989.1| peptide chain release factor 1 [Enterobacter sp. SST3]
gi|400217759|gb|EJO48650.1| peptide chain release factor 1 [Enterobacter sp. SST3]
Length = 360
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 161/237 (67%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQDDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|388259168|ref|ZP_10136342.1| peptide chain release factor 1 [Cellvibrio sp. BR]
gi|387937126|gb|EIK43683.1| peptide chain release factor 1 [Cellvibrio sp. BR]
Length = 360
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/196 (55%), Positives = 146/196 (74%), Gaps = 5/196 (2%)
Query: 133 DKDMLDMATEEL--CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFA 190
D DM +MA EEL C A E +L+ L K LLPKD DE++C LE+RAGTGG+EA++F+
Sbjct: 73 DDDMKEMAEEELKDCEAQLEPMQLE--LQKLLLPKDPNDEKNCYLEIRAGTGGDEAAIFS 130
Query: 191 VDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVP 250
D+F+MY RY++ +GW+ EV+ E + G+KE +SG GVY KLKFESG HRVQRVP
Sbjct: 131 GDLFRMYSRYAETQGWRVEVLSQNEGEHGGFKEIITLVSGQGVYSKLKFESGAHRVQRVP 190
Query: 251 LTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
TE GR+HTSA +VA++P+ADE+ ++ + DLRIDT+R+ G+GGQH N T+SA+R+ H
Sbjct: 191 ETESQGRIHTSACTVAVMPEADEMEEININKADLRIDTFRASGAGGQHVNKTDSAIRIVH 250
Query: 310 IPTGMTISIQDERSQH 325
+PTG+ I QDERSQH
Sbjct: 251 LPTGLVIECQDERSQH 266
>gi|225175858|ref|ZP_03729851.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1]
gi|225168782|gb|EEG77583.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1]
Length = 356
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 179/267 (67%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R LE L++ PE A E+ K KE +L + ++ E + ++++
Sbjct: 1 MFDKLKATEERFDELEKLISDPEVIARQDEWRKLTKEHSRLSEVVNAYREYQQVEQDLAE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + D++M +E+ ++++ L L LLP+D D+++ I+EVRAGTG
Sbjct: 61 AKEMLRDGG-DEEMSRFLKDEITANTEKKEELTEKLRLLLLPRDPNDDKNVIVEVRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY RY++++GWK EV+ E+D+ G+KE AI G G Y +LKFESG
Sbjct: 120 GDEAALFAGDLFRMYTRYAERQGWKTEVLDANETDIGGFKEVVFAIEGDGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GR+HTSA +VA+LP+A++V+V + DLRID + S G GGQ NTT
Sbjct: 180 VHRVQRVPETESGGRIHTSAATVAVLPEAEDVEVDINQNDLRIDVFCSSGPGGQSVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+TH+P+G+ +S QDE+SQH KD
Sbjct: 240 SAVRITHLPSGIVVSCQDEKSQHKNKD 266
>gi|449104319|ref|ZP_21741059.1| peptide chain release factor 1 [Treponema denticola AL-2]
gi|449119189|ref|ZP_21755588.1| peptide chain release factor 1 [Treponema denticola H1-T]
gi|449121581|ref|ZP_21757928.1| peptide chain release factor 1 [Treponema denticola MYR-T]
gi|448950180|gb|EMB31003.1| peptide chain release factor 1 [Treponema denticola MYR-T]
gi|448951115|gb|EMB31931.1| peptide chain release factor 1 [Treponema denticola H1-T]
gi|448963338|gb|EMB44016.1| peptide chain release factor 1 [Treponema denticola AL-2]
Length = 361
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DTELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|295688344|ref|YP_003592037.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
gi|295430247|gb|ADG09419.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
Length = 356
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 166/232 (71%), Gaps = 8/232 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + +++ +++L ++ E+D + + D +M DM +E+ ++
Sbjct: 35 SKEHAELKPVAEAVERLAKLSAERAELDVMAA-------DPEMADMVRDEMAELDEKLPV 87
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L L PKD + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q GW+ E+ +
Sbjct: 88 LERDLALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQLHGWRVEIDSI 147
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E ++ GYKE A+I+G GV+G+LKFESG+HRVQRVP TE GR+HTSA +VA+LP+A++
Sbjct: 148 SEGEMGGYKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAED 207
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
V++ ++ DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 208 VEIDIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 258
>gi|289163904|ref|YP_003454042.1| peptide chain release factor 1 [Legionella longbeachae NSW150]
gi|288857077|emb|CBJ10892.1| peptide chain release factor 1 [Legionella longbeachae NSW150]
Length = 362
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 145/197 (73%), Gaps = 1/197 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
EDK++ MA EEL A + + L L L+PKD DER+ LE+RAGTGG+EA++F
Sbjct: 70 AGEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIRAGTGGDEAAIF 129
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++++GW+ E++ + + GYKE ISG VY +LKFESG HRVQRV
Sbjct: 130 AGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLKFESGAHRVQRV 189
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VAILP+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 190 PETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRIT 249
Query: 309 HIPTGMTISIQDERSQH 325
HIPTG+ + QDERSQH
Sbjct: 250 HIPTGVVVECQDERSQH 266
>gi|408673534|ref|YP_006873282.1| Peptide chain release factor 1 [Emticicia oligotrophica DSM 17448]
gi|387855158|gb|AFK03255.1| Peptide chain release factor 1 [Emticicia oligotrophica DSM 17448]
Length = 359
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 174/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI R + + PE + ++++ +KE + L ++ + I+G
Sbjct: 1 MLNQLEAIRERYEEVSQQMTMPEVVSDMTKFTRLSKEYKDLEKIVNEYKIYKNVLSNIEG 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K +I +D++M D+A EEL + +++ L++ L + L+PKD D ++ ILE+RAGTG
Sbjct: 61 AKDIIAN-EKDEEMRDLAKEELDELLPQKETLEATLKEMLIPKDPNDSKNVILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+F+MY+R+ +K+GW+ ++ E GYKE + G VYGKLK+ESG
Sbjct: 120 GDEASIFAGDLFRMYQRFIEKQGWRMTLLDHNEGTAGGYKEIVVQVEGEDVYGKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA LP+ADEVD+ + D+R+DT+ S G+GGQ NTT
Sbjct: 180 VHRVQRVPATESQGRVHTSAATVAALPEADEVDLTINMNDIRVDTFCSSGAGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+ HIPTG+T+S QDERSQ
Sbjct: 240 SAVRMVHIPTGVTVSCQDERSQ 261
>gi|312879994|ref|ZP_07739794.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas
paucivorans DSM 12260]
gi|310783285|gb|EFQ23683.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas
paucivorans DSM 12260]
Length = 357
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 159/225 (70%), Gaps = 19/225 (8%)
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLL 159
LR+++D+ L+S+ ED+ + ++A EEL ++ + L+ +
Sbjct: 57 LRRIQDARELLSQ-------------------EDEGLRELAKEELSTLEEQVEPLEQRIK 97
Query: 160 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLR 219
LLP+D D +D ++E+RAG GGEEA+LFA D+F+MY R+++++GW E++ ++ +
Sbjct: 98 VLLLPQDPNDAKDVVIEIRAGAGGEEAALFAADLFRMYNRFAEREGWGSELLSTNDTGIG 157
Query: 220 GYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLR 279
GYKE + G GVY KLK+ESG+HRVQR+P+TE GR+HTS +VA+LP+A+EVDV++R
Sbjct: 158 GYKEVVFHLKGTGVYSKLKYESGVHRVQRIPVTEAGGRIHTSTATVAVLPEAEEVDVQVR 217
Query: 280 NEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
EDL+IDTYR+ G+GGQ+ N T+SAVR+TH+PTG+ ++ QDERSQ
Sbjct: 218 TEDLKIDTYRASGAGGQYVNMTDSAVRITHVPTGLVVTCQDERSQ 262
>gi|449108520|ref|ZP_21745162.1| peptide chain release factor 1 [Treponema denticola ATCC 33520]
gi|448961321|gb|EMB42026.1| peptide chain release factor 1 [Treponema denticola ATCC 33520]
Length = 361
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DTELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|270157830|ref|ZP_06186487.1| peptide chain release factor 1 [Legionella longbeachae D-4968]
gi|269989855|gb|EEZ96109.1| peptide chain release factor 1 [Legionella longbeachae D-4968]
Length = 351
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 145/197 (73%), Gaps = 1/197 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
EDK++ MA EEL A + + L L L+PKD DER+ LE+RAGTGG+EA++F
Sbjct: 59 AGEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIRAGTGGDEAAIF 118
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++++GW+ E++ + + GYKE ISG VY +LKFESG HRVQRV
Sbjct: 119 AGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLKFESGAHRVQRV 178
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VAILP+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 179 PETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238
Query: 309 HIPTGMTISIQDERSQH 325
HIPTG+ + QDERSQH
Sbjct: 239 HIPTGVVVECQDERSQH 255
>gi|385793515|ref|YP_005826491.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678840|gb|AEE87969.1| Peptide chain release factor 1 [Francisella cf. novicida Fx1]
Length = 361
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQTAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|422341219|ref|ZP_16422160.1| peptide chain release factor 1 [Treponema denticola F0402]
gi|449116740|ref|ZP_21753186.1| peptide chain release factor 1 [Treponema denticola H-22]
gi|325474790|gb|EGC77976.1| peptide chain release factor 1 [Treponema denticola F0402]
gi|448952995|gb|EMB33791.1| peptide chain release factor 1 [Treponema denticola H-22]
Length = 361
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|254373464|ref|ZP_04988952.1| peptide chain release factor 1 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571190|gb|EDN36844.1| peptide chain release factor 1 [Francisella novicida GA99-3549]
Length = 361
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|431796817|ref|YP_007223721.1| peptide chain release factor 1 [Echinicola vietnamensis DSM 17526]
gi|430787582|gb|AGA77711.1| peptide chain release factor 1 [Echinicola vietnamensis DSM 17526]
Length = 358
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 165/247 (66%), Gaps = 7/247 (2%)
Query: 82 LVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS--LIYECSEDKDML 137
L+ QP+A ++Y+K KE + L + + E + +D +KS I E +D D
Sbjct: 18 LIIQPDAMSDMSKYTKLTKEYKDLEKIVKVFDEYKLV---LDNIKSSKAILETEKDPDFR 74
Query: 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMY 197
DMA EL ++E + L + L+PKD D +DCILE+R+GTGG+EA++FA D+F+MY
Sbjct: 75 DMAKAELDELKEKETEYEKALKQMLIPKDPNDSKDCILEIRSGTGGDEAAIFAGDLFRMY 134
Query: 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGR 257
ERY++K+ W V+ +T GYKE + +SG VYG LK+ESG+HRVQRVP TE GR
Sbjct: 135 ERYAEKQNWSLTVLDLTFGSAGGYKEIISTVSGADVYGMLKYESGVHRVQRVPATETQGR 194
Query: 258 VHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
VHTSA +VA+LP+ ++VDV++ D+R DTY S G GGQ NTT SAVR+TH PTG+ ++
Sbjct: 195 VHTSAATVAVLPEMEDVDVQIDMNDVRKDTYCSSGPGGQSVNTTYSAVRLTHEPTGIVVT 254
Query: 318 IQDERSQ 324
QD++SQ
Sbjct: 255 CQDQKSQ 261
>gi|418618975|ref|ZP_13181818.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
gi|374825836|gb|EHR89755.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
Length = 358
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEASGLKSELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
IPTG+ I+ E+SQ
Sbjct: 247 IPTGI-IATSSEKSQ 260
>gi|215486443|ref|YP_002328874.1| peptide chain release factor 1 [Escherichia coli O127:H6 str.
E2348/69]
gi|312966451|ref|ZP_07780673.1| peptide chain release factor 1 [Escherichia coli 2362-75]
gi|417755208|ref|ZP_12403297.1| peptide chain release factor 1 [Escherichia coli DEC2B]
gi|418996325|ref|ZP_13543930.1| peptide chain release factor 1 [Escherichia coli DEC1A]
gi|419001558|ref|ZP_13549104.1| peptide chain release factor 1 [Escherichia coli DEC1B]
gi|419007039|ref|ZP_13554489.1| peptide chain release factor 1 [Escherichia coli DEC1C]
gi|419012997|ref|ZP_13560357.1| peptide chain release factor 1 [Escherichia coli DEC1D]
gi|419028294|ref|ZP_13575482.1| peptide chain release factor 1 [Escherichia coli DEC2C]
gi|419034149|ref|ZP_13581243.1| peptide chain release factor 1 [Escherichia coli DEC2D]
gi|419039095|ref|ZP_13586145.1| peptide chain release factor 1 [Escherichia coli DEC2E]
gi|425299750|ref|ZP_18689741.1| peptide chain release factor 1 [Escherichia coli 07798]
gi|254790880|sp|B7UQ99.1|RF1_ECO27 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|215264515|emb|CAS08882.1| peptide chain release factor RF-1 [Escherichia coli O127:H6 str.
E2348/69]
gi|312288904|gb|EFR16802.1| peptide chain release factor 1 [Escherichia coli 2362-75]
gi|377846926|gb|EHU11931.1| peptide chain release factor 1 [Escherichia coli DEC1A]
gi|377848662|gb|EHU13643.1| peptide chain release factor 1 [Escherichia coli DEC1C]
gi|377851813|gb|EHU16749.1| peptide chain release factor 1 [Escherichia coli DEC1B]
gi|377860629|gb|EHU25453.1| peptide chain release factor 1 [Escherichia coli DEC1D]
gi|377877161|gb|EHU41758.1| peptide chain release factor 1 [Escherichia coli DEC2B]
gi|377882394|gb|EHU46939.1| peptide chain release factor 1 [Escherichia coli DEC2D]
gi|377883158|gb|EHU47687.1| peptide chain release factor 1 [Escherichia coli DEC2C]
gi|377896571|gb|EHU60966.1| peptide chain release factor 1 [Escherichia coli DEC2E]
gi|408219356|gb|EKI43506.1| peptide chain release factor 1 [Escherichia coli 07798]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQQLHVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 DAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|118498113|ref|YP_899163.1| peptide chain release factor 1 [Francisella novicida U112]
gi|194323340|ref|ZP_03057124.1| peptide chain release factor 1 [Francisella novicida FTE]
gi|166223559|sp|A0Q844.1|RF1_FRATN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118424019|gb|ABK90409.1| protein chain release factor A [Francisella novicida U112]
gi|194322704|gb|EDX20184.1| peptide chain release factor 1 [Francisella tularensis subsp.
novicida FTE]
Length = 361
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|284007355|emb|CBA72733.1| peptide chain release factor 1 [Arsenophonus nasoniae]
Length = 349
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 159/237 (67%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D R Q++I+ ++L++ D +M +MA EEL A +
Sbjct: 24 FRALSKEYAQLTDVTKCFQSWRAVQQDIETAETLLH----DPEMREMAQEELKEAKKRNE 79
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLPKD DE++C LE+RAGTGG+EA++FA D+F+MY RY++ + W+ EV+
Sbjct: 80 EFEQQLQILLLPKDPDDEKNCFLEIRAGTGGDEAAIFAGDLFRMYNRYAESRRWRIEVMN 139
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A +SG VYG+LKFESG HRVQRVP TE GR+HTSA +VAIL +
Sbjct: 140 ASEGEHGGYKEIIAKVSGDSVYGRLKFESGGHRVQRVPETESQGRIHTSACTVAILAEIP 199
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ + DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 200 ATELPDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 256
>gi|208779474|ref|ZP_03246819.1| peptide chain release factor 1 [Francisella novicida FTG]
gi|208744435|gb|EDZ90734.1| peptide chain release factor 1 [Francisella novicida FTG]
Length = 361
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|206890162|ref|YP_002248216.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|238054474|sp|B5YIQ7.1|RF1_THEYD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|206742100|gb|ACI21157.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 353
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 176/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++++ +E + + ++ P+ ++ EY K ++E +L + E + K+I+
Sbjct: 1 MLEKLMEVENKYEKITQTLSDPKVFSNKDEYMKYSREQAELEPIVTKFREYKRILKQIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ +I S D D+ ++A EEL + +++ L LLPKD DE++ ILE+RAGTG
Sbjct: 61 AEEMI--KSGDPDLKELAEEELQQLKKIKPQIEQELKVLLLPKDPRDEKNVILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA ++F+MY +Y++ KGWK E++ + L G+KE A ISG G + KLK+ESG
Sbjct: 119 GEEAALFAANLFRMYAKYAESKGWKVEIIDSHPTGLGGFKEIIATISGKGAFSKLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P+TE SGR+HTS +VA+LP+A+EVD+++ +DLRIDT+ S G GGQ NT
Sbjct: 179 VHRVQRIPVTEASGRIHTSTATVAVLPEAEEVDIKIDEKDLRIDTFCSSGPGGQSVNTAY 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+ HIPTG+ + QDERSQ
Sbjct: 239 SAVRIVHIPTGIIVQCQDERSQ 260
>gi|42527989|ref|NP_973087.1| peptide chain release factor 1 [Treponema denticola ATCC 35405]
gi|449111028|ref|ZP_21747627.1| peptide chain release factor 1 [Treponema denticola ATCC 33521]
gi|449114156|ref|ZP_21750636.1| peptide chain release factor 1 [Treponema denticola ATCC 35404]
gi|81570139|sp|Q73JU6.1|RF1_TREDE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|41819034|gb|AAS13006.1| peptide chain release factor 1 [Treponema denticola ATCC 35405]
gi|448957153|gb|EMB37905.1| peptide chain release factor 1 [Treponema denticola ATCC 35404]
gi|448959291|gb|EMB40012.1| peptide chain release factor 1 [Treponema denticola ATCC 33521]
Length = 361
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|121534882|ref|ZP_01666701.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1]
gi|121306481|gb|EAX47404.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1]
Length = 356
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 177/269 (65%), Gaps = 16/269 (5%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE + LENL++ P+ A+ +E+ K K KL + + E + + +D
Sbjct: 1 MLDKLQAIEDKYLELENLISDPDIIANQSEWQKHAKAHAKLTEIVTKFREYKKVLQGMDD 60
Query: 123 LKSLIYECSEDKDMLDMATEEL------CLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ ++ E +D D +M EL C+ ++EE R+ +LPKD DE++ I+E
Sbjct: 61 AREMLKEKLDD-DFREMVEAELAELKAKCVRLEEELRI------LMLPKDPNDEKNVIIE 113
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAG GG+EA+LFA D+F+MY RY++ +GW+ E++ SDL G+KE +I G G Y +
Sbjct: 114 IRAGAGGDEAALFAGDLFRMYTRYAEAQGWRVELLDANSSDLGGFKEVVFSIQGDGAYSR 173
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGG 295
K+ESG+HRVQRVP TE SGR+HTS V+VA+LP+AD+V DV + DLRIDTY + G+GG
Sbjct: 174 FKYESGVHRVQRVPETEASGRIHTSTVTVAVLPEADDVDDVVINPSDLRIDTYCASGAGG 233
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQ 324
QH N T SAVR+TH+PTG+ + QDE+SQ
Sbjct: 234 QHVNKTESAVRITHLPTGIVVQCQDEKSQ 262
>gi|423097283|ref|ZP_17085079.1| peptide chain release factor 1 [Pseudomonas fluorescens Q2-87]
gi|397884652|gb|EJL01135.1| peptide chain release factor 1 [Pseudomonas fluorescens Q2-87]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPI---VAAYKQLLKVQDDLEGAQALLKDS--DPDMREMAVEEVREAKEQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELESSLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|387825191|ref|YP_005824662.1| Peptide chain release factor 1 [Francisella cf. novicida 3523]
gi|332184657|gb|AEE26911.1| Peptide chain release factor 1 [Francisella cf. novicida 3523]
Length = 361
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANETIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|262404524|ref|ZP_06081079.1| peptide chain release factor 1 [Vibrio sp. RC586]
gi|262349556|gb|EEY98694.1| peptide chain release factor 1 [Vibrio sp. RC586]
Length = 362
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 147/198 (74%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|386010393|ref|YP_005928670.1| protein PrfA [Pseudomonas putida BIRD-1]
gi|395447154|ref|YP_006387407.1| PrfA [Pseudomonas putida ND6]
gi|397693751|ref|YP_006531631.1| peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|421524618|ref|ZP_15971239.1| peptide chain release factor 1 [Pseudomonas putida LS46]
gi|313497099|gb|ADR58465.1| PrfA [Pseudomonas putida BIRD-1]
gi|388561151|gb|AFK70292.1| PrfA [Pseudomonas putida ND6]
gi|397330481|gb|AFO46840.1| Peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|402751081|gb|EJX11594.1| peptide chain release factor 1 [Pseudomonas putida LS46]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|78187994|ref|YP_378332.1| peptide chain release factor 1 [Chlorobium chlorochromatii CaD3]
gi|119361520|sp|Q3AUE2.1|RF1_CHLCH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|78170193|gb|ABB27289.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium
chlorochromatii CaD3]
Length = 357
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 176/263 (66%), Gaps = 4/263 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AI+ + LE ++ P + + + K N+E LR+ + + K E++
Sbjct: 1 MLDKLQAIKEKHLDLEQALSDPSLANDQERFRKLNREYSNLREVVQAFDAYQRKATELEA 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ S D +M +A E+ + L+ L LLPK++AD R+ I+E+RAGTG
Sbjct: 61 AQHLLATES-DTEMKALAEAEVDELQETVAELEQGLKILLLPKEEADSRNVIIEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
G+EASLFA D+ +MY+RY+++KGW+++V+ ES + G +KE ISG V+G +K+ES
Sbjct: 120 GDEASLFAADLTRMYQRYAEQKGWQYKVLDYNESSVPGGFKEMILEISGNNVFGTMKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSAVSVA+LP+A+EVDV +R +DLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPDTEAQGRIHTSAVSVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
+AVR+TH+PTG+ + Q+ERSQ
Sbjct: 240 ETAVRITHMPTGIVAACQEERSQ 262
>gi|365970932|ref|YP_004952493.1| peptide chain release factor 1 [Enterobacter cloacae EcWSU1]
gi|365749845|gb|AEW74072.1| Peptide chain release factor 1 [Enterobacter cloacae EcWSU1]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELLDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANDGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|449473633|ref|XP_004153936.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAELRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|104780100|ref|YP_606598.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
gi|166223588|sp|Q1IEX1.1|RF1_PSEE4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|95109087|emb|CAK13784.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R+
Sbjct: 56 RKVQDDLEGAQALLKDA--DPDLREMAVEEVREAKEQLVGLESQLQRMLLPKDPNDGRNV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G V
Sbjct: 114 FLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGDSV 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGG 292
YGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+ G
Sbjct: 174 YGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASG 233
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 234 AGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|26987469|ref|NP_742894.1| peptide chain release factor 1 [Pseudomonas putida KT2440]
gi|32171521|sp|Q88PW5.1|RF1_PSEPK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|24982133|gb|AAN66358.1|AE016264_2 peptide chain release factor 1 [Pseudomonas putida KT2440]
Length = 360
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|114777343|ref|ZP_01452340.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1]
gi|114552125|gb|EAU54627.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/201 (54%), Positives = 146/201 (72%), Gaps = 4/201 (1%)
Query: 129 EC-SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+C +E K+M + E+ AI S+LL LPKD D RD ILE+RAGTGG+EA+
Sbjct: 69 DCDAELKEMAEAEAREIKQAISASDAALSMLL---LPKDPNDNRDVILEIRAGTGGDEAA 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA D+F+MY RY++ +G+K E++ +++ + GYKE A ISG GV+ + KFESG HRVQ
Sbjct: 126 LFAADLFRMYSRYAETQGYKVEILSASDTGIGGYKEIIAQISGNGVFSRFKFESGAHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTSA +VAILP A+EVD+ +R EDLRID YR+ G+GGQH N T SAVR+
Sbjct: 186 RVPETESGGRIHTSACTVAILPVAEEVDINIRPEDLRIDVYRASGAGGQHVNKTESAVRI 245
Query: 308 THIPTGMTISIQDERSQHMVK 328
THIP+G+ ++ QD+ SQH K
Sbjct: 246 THIPSGLVVTCQDQASQHKNK 266
>gi|371777498|ref|ZP_09483820.1| bacterial peptide chain release factor 1 (brf-1) [Anaerophaga sp.
HS1]
Length = 356
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ +++ R + L+ P A Y K NKE R+L + + + E + I+
Sbjct: 1 MLEKLESLKLRFEEVGQLITDPSVLADQKRYVKLNKEYRELEEIVQVGKEYKNLIDNIES 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
++++ E ED++M +A +E+ ++ ++ + LLP D D ++ +LE+RAGTG
Sbjct: 61 ARAMLRE-EEDEEMKALARQEIEELEKKKPEMEEKIKMLLLPGDPEDSKNAVLEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+F+MY ++ +KKGWK+EV +E + GYKE +SG GVYG LK+ESG
Sbjct: 120 GDEASIFAGDLFRMYTKFCEKKGWKYEVTHFSEGTVGGYKEVVMKVSGNGVYGVLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA SVA+LP+A+E D+ LR ED+R DTY S G GGQ NTT
Sbjct: 180 VHRVQRVPQTETQGRVHTSAASVAVLPEAEEFDIELRPEDIRKDTYCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SA+R+THIPTG+ ++ QD++SQ
Sbjct: 240 SAIRLTHIPTGIVVTCQDQKSQ 261
>gi|254374925|ref|ZP_04990406.1| peptide chain release factor 1 [Francisella novicida GA99-3548]
gi|151572644|gb|EDN38298.1| peptide chain release factor 1 [Francisella novicida GA99-3548]
Length = 361
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|406661878|ref|ZP_11069988.1| Peptide chain release factor 1 [Cecembia lonarensis LW9]
gi|405554236|gb|EKB49346.1| Peptide chain release factor 1 [Cecembia lonarensis LW9]
Length = 359
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 171/262 (65%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ A++ R L L+ QPEA ++Y+K KE + L + L + + +
Sbjct: 1 MLEKLQALKDRFIELGQLIIQPEAMSDMSKYTKLTKEYKDLEKIVALYDSYKLVVENLAS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ E +D D +MA EL + + L+ L + L+PKD D +DCILE+RAGTG
Sbjct: 61 TKELL-EKEKDPDFREMAKMELEELKRKHEILEEELKQQLIPKDPNDSKDCILEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++FA D+F+MY+R+ +K+ WK V+ +T GYKE + +SG VYG LK+ESG
Sbjct: 120 GDEAAIFAGDLFRMYQRFCEKQNWKITVLDLTFGSSGGYKEIISTVSGADVYGMLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +VA+LP+ DEV+V + D+R DTY S G GGQ NTT
Sbjct: 180 VHRVQRVPATETQGRVHTSAATVAVLPEMDEVEVDINMNDIRKDTYCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH PTG+ ++ QDE+SQ
Sbjct: 240 SAVRLTHNPTGLVVTCQDEKSQ 261
>gi|449105623|ref|ZP_21742325.1| peptide chain release factor 1 [Treponema denticola ASLM]
gi|451969926|ref|ZP_21923155.1| peptide chain release factor 1 [Treponema denticola US-Trep]
gi|448967006|gb|EMB47650.1| peptide chain release factor 1 [Treponema denticola ASLM]
gi|451701381|gb|EMD55853.1| peptide chain release factor 1 [Treponema denticola US-Trep]
Length = 361
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 176/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + +R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|238751561|ref|ZP_04613052.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380]
gi|238710279|gb|EEQ02506.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380]
Length = 360
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +++ + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLEAAEMML----EDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAESRRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGVFGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|254369840|ref|ZP_04985850.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122799|gb|EDO66928.1| peptide chain release factor 1 [Francisella tularensis subsp.
holarctica FSC022]
Length = 361
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + ++L+S L LLP+D D+ + LE+RAGT
Sbjct: 62 KQAAYEMLNEKDAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQR+P TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRIPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|146311983|ref|YP_001177057.1| peptide chain release factor 1 [Enterobacter sp. 638]
gi|166977363|sp|A4WBC6.1|RF1_ENT38 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145318859|gb|ABP61006.1| bacterial peptide chain release factor 1 (bRF-1) [Enterobacter sp.
638]
Length = 360
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQEELQEAKARAE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEVP 210
Query: 273 EVDVRLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ N DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|238792551|ref|ZP_04636184.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909]
gi|238728186|gb|EEQ19707.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909]
Length = 360
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +++ + ++ ED +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDLEAAEMML----EDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNK 267
>gi|228474912|ref|ZP_04059641.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
gi|228271144|gb|EEK12524.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
Length = 358
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEALGLKSELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
IPTG+ I+ E+SQ
Sbjct: 247 IPTGI-IATSSEKSQ 260
>gi|238763000|ref|ZP_04623967.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638]
gi|238698758|gb|EEP91508.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ ED +M +MA +EL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDIEAAEMML----EDPEMREMAQDELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|387886341|ref|YP_006316640.1| peptide chain release factor 1 [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871157|gb|AFJ43164.1| peptide chain release factor 1 [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 361
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/205 (52%), Positives = 152/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL LA + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDVELVEMAKEELKLANEAIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|350571878|ref|ZP_08940194.1| peptide chain release factor RF1 [Neisseria wadsworthii 9715]
gi|349791063|gb|EGZ44956.1| peptide chain release factor RF1 [Neisseria wadsworthii 9715]
Length = 358
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/250 (48%), Positives = 166/250 (66%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PE++ Y K NKE +L + + + R Q ++ + ++ D DM D
Sbjct: 22 LLGAPESTADMDNYRKLNKEHAELTPIVEVFRQYRQAQNDLADAEEML----SDPDMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + + L L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEAAKTKIETLDLALQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYTR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ESDL GYKE A I G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNNWQVEIVSANESDLGGYKEVIARIIGLGAYSKLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ ++ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVEC 257
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 258 QDGRSQHANK 267
>gi|452747687|ref|ZP_21947480.1| peptide chain release factor 1 [Pseudomonas stutzeri NF13]
gi|452008431|gb|EME00671.1| peptide chain release factor 1 [Pseudomonas stutzeri NF13]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 154/210 (73%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q++++G ++L+ + D DM +MA EE+ A + + L++ L + LLPKD D R+ LE
Sbjct: 59 QQDLEGAQALLKDS--DPDMREMAEEEVTEAKTQLETLEANLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++FA D+F+MY RY++K+GW+ E++ +E + GYKE + + G VY K
Sbjct: 117 IRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + +LR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPAELRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+PTGM + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPTGMVVECQEERSQH 266
>gi|218507716|ref|ZP_03505594.1| peptide chain release factor 1 [Rhizobium etli Brasil 5]
Length = 282
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 102/164 (62%), Positives = 134/164 (81%), Gaps = 1/164 (0%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD ADE+ ILE+RAGTGG EA+LFA D+F+MYER++ +KGWK EV+ +E + GY
Sbjct: 24 LLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGY 83
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A I+G GV+ KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A+E+D+ +R E
Sbjct: 84 KEIIATITGRGVFAKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPE 143
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
D+RIDT RS G+GGQH NTT+SAVR+TH+P+G+ ++ E+SQH
Sbjct: 144 DIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVT-SSEKSQH 186
>gi|73542728|ref|YP_297248.1| peptide chain release factor 1 [Ralstonia eutropha JMP134]
gi|119361585|sp|Q46WS9.1|RF1_RALEJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72120141|gb|AAZ62404.1| bacterial peptide chain release factor 1 (bRF-1) [Ralstonia
eutropha JMP134]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 164/239 (68%), Gaps = 5/239 (2%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L R Q ++ ++L+ +D +M D A +E+ A +
Sbjct: 34 QYRKLSREHAELSPVAEQYGFYRQAQDDLATAQALL----DDPEMKDFAADEIASARERL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L K LLPKD D+R+ ILE+RAGTGGEE++LFA D+ +MY R+++++ W+ E++
Sbjct: 90 ESLEGSLQKLLLPKDPNDDRNLILEIRAGTGGEESALFAGDLLRMYTRFAERQRWQVEIM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
DEV DV + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH KD
Sbjct: 210 DEVGDVEINPSDLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKD 268
>gi|240950074|ref|ZP_04754376.1| peptide chain release factor 1 [Actinobacillus minor NM305]
gi|240295449|gb|EER46204.1| peptide chain release factor 1 [Actinobacillus minor NM305]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E ++L+ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIEENKAEIEQLEQNLQILLLPKDPNDEYNCFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY++ K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|345299600|ref|YP_004828958.1| peptide chain release factor 1 [Enterobacter asburiae LF7a]
gi|345093537|gb|AEN65173.1| Peptide chain release factor 1 [Enterobacter asburiae LF7a]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQEAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|314935933|ref|ZP_07843283.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
gi|313655939|gb|EFS19681.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
Length = 358
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE P + K +KE L+ ++ + + ++K++E+ + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEIDEMLTE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEEASGLKGELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
IPTG+ I+ E+SQ
Sbjct: 247 IPTGI-IATSSEKSQ 260
>gi|383761590|ref|YP_005440572.1| peptide chain release factor 1 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381858|dbj|BAL98674.1| peptide chain release factor 1 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 361
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 182/267 (68%), Gaps = 8/267 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTK----Q 117
+ I+ RV I R + L+ P A A++++ N EL + R + +++ + Q
Sbjct: 1 MSIILDRVARIADRYDEITALMADP-AVAADFARLN-ELDRERQEIEELAQTYRRYEHVQ 58
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
K+I+ +SL+++ D++M ++A E+ +E + L+ + LLPKD DE++ I+E+
Sbjct: 59 KQIEENRSLLHDA--DEEMRELAESEIEALQEELEALEKQMKTLLLPKDPKDEKNVIVEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGGEEASLFA ++++MY R+++ +K E++ + E+ L G KE AI G G Y KL
Sbjct: 117 RAGTGGEEASLFAAELYRMYTRWAEAHRYKVELLSINETGLGGVKEVIFAIKGKGAYSKL 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
K+ESG+HRVQRVP+TE +GR+HTSA +VA+LP+ADE+DV + DLRID +RS G GGQ
Sbjct: 177 KYESGVHRVQRVPVTESAGRIHTSAATVAVLPEADEIDVVINENDLRIDIFRSSGPGGQS 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
NTT+SAVR+TH+PTG+ +S QDE+SQ
Sbjct: 237 VNTTDSAVRITHLPTGIVVSCQDEKSQ 263
>gi|290969299|ref|ZP_06560824.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str.
28L]
gi|290780805|gb|EFD93408.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str.
28L]
Length = 360
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 172/260 (66%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+V A+E + LE ++ P A E+ K KE L + + + K I G +
Sbjct: 5 KVQAVENKYNDLEQRISDPAVIARQKEWQKLTKEHASLAPIIEAYRKYQEVCKTIRGDRE 64
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ + S D ++ MA EE+ E+ L+ L +LPKD D+++ I+E+R G GG+E
Sbjct: 65 LLDDPSTDTELTAMAKEEIAELTKEQAALEEKLHILMLPKDPHDDKNVIMEIRGGAGGDE 124
Query: 186 ASLFAVDVFKMYERYSQKK-GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
A+LFA D+F+MY +Y +K+ GWK E++ E +L GYKE ++ G GVYGKLK+ESG+H
Sbjct: 125 AALFAGDLFRMYMKYIEKQPGWKAELISANEPELGGYKEVVFSVEGAGVYGKLKYESGVH 184
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE GR+HTS +VA+LP+AD+V++ L +D+R+D +R+ G+GGQH N T+SA
Sbjct: 185 RVQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRVDYFRASGAGGQHINKTSSA 244
Query: 305 VRVTHIPTGMTISIQDERSQ 324
VR+TH+P+G+ + QDERSQ
Sbjct: 245 VRMTHMPSGIVVECQDERSQ 264
>gi|429335284|ref|ZP_19215921.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
gi|428760086|gb|EKX82363.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
Length = 360
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R Q +++G ++L+ + D D+ +MA EE+ A ++ + L+ L + LLPKD D R+
Sbjct: 56 RKLQDDLEGAQALLKDS--DPDLREMAIEEVREAKEQLQALEDQLQRMLLPKDPNDGRNV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G V
Sbjct: 114 FLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEIIARVEGEAV 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGG 292
YGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+ G
Sbjct: 174 YGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASG 233
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 234 AGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|262199727|ref|YP_003270936.1| peptide chain release factor 1 [Haliangium ochraceum DSM 14365]
gi|262083074|gb|ACY19043.1| peptide chain release factor 1 [Haliangium ochraceum DSM 14365]
Length = 363
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 179/261 (68%), Gaps = 11/261 (4%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKE---LRKLRDSMHLISELRTKQKEIDGLKS 125
A+ERR + +L+ Q E ++ +E++K ++E L KL + ELRT++ E + +
Sbjct: 13 ALERRYQEVSDLLGQNEVISNRSEFTKLSREHAELAKLVAAWQEYRELRTQESEARAMVA 72
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLL-PKDDADERDCILEVRAGTGGE 184
D +M ++A EEL A+ E ++ +K LL PKD D ++ +LE+RAGTGG+
Sbjct: 73 ----SESDAEMRELAREELR-ALQESLEVKEQHIKILLLPKDPNDGKNILLELRAGTGGD 127
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EA+LFA D+++MY RY++++GWK E++ +++ G KEA I+G VY LK+ESG+H
Sbjct: 128 EAALFAGDLYRMYMRYAERQGWKTEIMSMSDGAAGGMKEAVVLIAGKDVYSSLKYESGVH 187
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP TE GRVHTSA +V ++P+A+EVD++L +DLRID YRS G GGQ NTT+SA
Sbjct: 188 RVQRVPATESQGRVHTSAATVVVMPEAEEVDIKLEEKDLRIDVYRSSGPGGQSVNTTDSA 247
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VRVTH+PTG+ + QDE+SQH
Sbjct: 248 VRVTHLPTGIVVICQDEKSQH 268
>gi|238783270|ref|ZP_04627295.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970]
gi|238715863|gb|EEQ07850.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970]
Length = 360
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q++I+ + ++ +D +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSAQEDIEAAEMML----DDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G +G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGAFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNK 267
>gi|404378163|ref|ZP_10983261.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453]
gi|294484033|gb|EFG31716.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453]
Length = 358
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 167/250 (66%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K N+E +L + + R + ++ + ++ D +M D
Sbjct: 22 LLGSPEATANMDNYRKLNQEHAELTPIVETYQQYRQAESDLADAQEML----SDPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + ++L L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEHAKTQIEQLDFELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
++++ W+ E+V +ESDL GYKE + G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 138 FAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLKFESGGHRVQRVPTTESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L DLRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 257
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 258 QDGRSQHANK 267
>gi|387891957|ref|YP_006322254.1| peptide chain release factor 1 [Pseudomonas fluorescens A506]
gi|387160126|gb|AFJ55325.1| peptide chain release factor 1 [Pseudomonas fluorescens A506]
Length = 360
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A D+ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKDKLAELEGDLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|433656140|ref|YP_007299848.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433294329|gb|AGB20151.1| peptide chain release factor 1 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 353
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 174/262 (66%), Gaps = 5/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ IE R L ++ PEA E+ K KE L + ++ + R +K +D
Sbjct: 1 MIDKLKTIEDRYVELSQKLSDPEAMKDMDEWKKMAKEHASLEE---IVQKYREYKKVLDD 57
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+KS D D+ DMA EEL ++E +L + + LLPKD DE+D I+E+RAG G
Sbjct: 58 IKSTKEIIEMDDDLKDMAQEELKSLEEKENKLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE +I+G G Y +LKFESG
Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKHWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ ++VDV + D++ID +RSGG GGQ NTT+
Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDVEINPNDIKIDVFRSGGHGGQSVNTTD 237
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ IS QDERSQ
Sbjct: 238 SAVRLTHIPTGIVISCQDERSQ 259
>gi|386834324|ref|YP_006239639.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201025|gb|AFI45880.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
Length = 360
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIETCKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|238797830|ref|ZP_04641323.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969]
gi|238718358|gb|EEQ10181.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969]
Length = 360
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D + E R+ Q +I+ + ++ +D +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTNCFKEWRSTQDDIEAAEMML----DDLEMREMAQEELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQLLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G +G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGEGAFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGLVVECQDERSQHKNK 267
>gi|262166266|ref|ZP_06034003.1| peptide chain release factor 1 [Vibrio mimicus VM223]
gi|262025982|gb|EEY44650.1| peptide chain release factor 1 [Vibrio mimicus VM223]
Length = 362
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|148546007|ref|YP_001266109.1| peptide chain release factor 1 [Pseudomonas putida F1]
gi|166223590|sp|A5VYG5.1|RF1_PSEP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148510065|gb|ABQ76925.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
putida F1]
Length = 360
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
Query: 112 ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
E R Q +++G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D R
Sbjct: 54 EWRKVQDDLEGAQALLKDS--DPDLREMALEEVREAKEQLLTLEAQLQRMLLPKDPNDGR 111
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 112 NVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGE 171
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYGKLKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+
Sbjct: 172 NVYGKLKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRA 231
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 232 SGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|436842689|ref|YP_007327067.1| peptide chain release factor 1 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432171595|emb|CCO24968.1| peptide chain release factor 1 [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 356
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 168/259 (64%), Gaps = 4/259 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IER LE + PE + Y K +L + ++ E + +++ K + +
Sbjct: 8 IERSFMDLEQELADPEVYNNQERYKKVTIAHSELGEVVNAFREYKQLASDLEDNKEMAKD 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D ++ +MA E+ + RL+ L LLPKD D ++ ILE+RAGTGGEEA+LF
Sbjct: 68 S--DPEIREMAEMEIAEIKERLPRLEDELKFLLLPKDPMDGKNIILEIRAGTGGEEAALF 125
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
D+F+MY RY+++ GWK EV+ + G+KE AA+SG +Y ++K+ESG HRVQRV
Sbjct: 126 GADLFRMYSRYAEQNGWKVEVLSSNPTGTGGFKEIIAAVSGSRIYSRMKYESGTHRVQRV 185
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VAI+P+A+E+DV++RNEDLR+D +R+ G GGQ NTT+SA+R+TH
Sbjct: 186 PATETQGRIHTSAATVAIMPEAEEIDVQVRNEDLRVDVFRASGPGGQSVNTTDSAIRITH 245
Query: 310 IPTGMTISIQDERSQHMVK 328
IPTG+ + QDE+SQH K
Sbjct: 246 IPTGLVVICQDEKSQHKNK 264
>gi|401764069|ref|YP_006579076.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400175603|gb|AFP70452.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 360
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWRQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANDGEHGGYKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|398848323|ref|ZP_10605144.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
gi|398248763|gb|EJN34164.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
Length = 360
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 155/213 (72%), Gaps = 3/213 (1%)
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
R Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R+
Sbjct: 56 RKVQDDLEGAQALLKDA--DPDLREMAVEEVRDAKEQLVGLESQLQRMLLPKDPNDGRNV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G V
Sbjct: 114 FLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEVIARVEGDSV 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGG 292
YGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR+ G
Sbjct: 174 YGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASG 233
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 234 AGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|349686191|ref|ZP_08897333.1| peptide chain release factor 1 [Gluconacetobacter oboediens 174Bp2]
Length = 353
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 167/238 (70%), Gaps = 6/238 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + +S LRT +Q E D + L D ++ ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVARVSALRTAEQAEHDATQMLA-----DPELKELAEAELETL 81
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ + ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+ ++GW+
Sbjct: 82 RRQIPELRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFAAELFGAYQRYADQRGWR 141
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 142 FEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAV 201
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+SQH
Sbjct: 202 LPEAEEVDVEVNETDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEKSQH 259
>gi|334704052|ref|ZP_08519918.1| peptide chain release factor 1 [Aeromonas caviae Ae398]
Length = 362
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 157/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R ++ ++ + ++ E ED D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRFRQAEENLETTRLMLEE--EDADLREMAQEELPLAKAAFE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 93 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNEGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + +L+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 EAEQIEINPSELKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|334132944|ref|ZP_08506699.1| Peptide chain release factor 1 [Methyloversatilis universalis FAM5]
gi|333441854|gb|EGK69826.1| Peptide chain release factor 1 [Methyloversatilis universalis FAM5]
Length = 361
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 148/197 (75%), Gaps = 1/197 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM ++A E+ + + +RL+ L ++LLPKD D R+ LE+RAGTGG+E++LFA D
Sbjct: 71 DPDMKELAQGEIEQSAADMERLEGELQRALLPKDPDDGRNVFLEIRAGTGGDESALFAAD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY+++ WK EVV +ESDL GY+E A +SG GVY +LKFESG HRVQRVP+T
Sbjct: 131 LFRMYSRYAERNRWKVEVVSASESDLGGYREIIARVSGDGVYQRLKFESGGHRVQRVPVT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++ + DEV ++ + DLRIDT+R+ G+GGQH N T+SAVR+THIP
Sbjct: 191 ETQGRIHTSACTVAVMAEVDEVGEIDINPADLRIDTFRASGAGGQHINKTDSAVRITHIP 250
Query: 312 TGMTISIQDERSQHMVK 328
TG+ + QD+RSQH K
Sbjct: 251 TGIVVECQDDRSQHRNK 267
>gi|94500021|ref|ZP_01306556.1| peptide chain release factor 1 [Bermanella marisrubri]
gi|94427879|gb|EAT12854.1| peptide chain release factor 1 [Oceanobacter sp. RED65]
Length = 363
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 144/195 (73%), Gaps = 1/195 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM +M EE A +E +RL L LLPKD D ++ ILE+RAGTGG+EA++F+
Sbjct: 72 DDPDMREMGQEEYSAAKEEIERLDGELQILLLPKDPNDGKNVILEIRAGTGGDEAAIFSG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++K+GWK EV+ E + GYKE I+G GVYG+LKFESG HRVQRVP
Sbjct: 132 DLFRMYTRYAEKRGWKCEVMSANEGEHGGYKEVITRIAGDGVYGQLKFESGAHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQ-ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ +E DV + DLRIDT+R+ G+GGQH N T+SA+R+TH+
Sbjct: 192 TESQGRIHTSACTVAVMPEIENEDDVDINKADLRIDTFRASGAGGQHVNKTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQH 325
PTG+ + Q+ERSQH
Sbjct: 252 PTGLVVECQEERSQH 266
>gi|15602420|ref|NP_245492.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378774264|ref|YP_005176507.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|421263288|ref|ZP_15714345.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425063244|ref|ZP_18466369.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
gi|13431785|sp|P57852.1|RF1_PASMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|12720821|gb|AAK02639.1| PrfA [Pasteurella multocida subsp. multocida str. Pm70]
gi|356596812|gb|AET15538.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|401689798|gb|EJS85175.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404382807|gb|EJZ79264.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
Length = 360
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|425065343|ref|ZP_18468463.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
gi|404384207|gb|EJZ80650.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
Length = 360
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|407699633|ref|YP_006824420.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248780|gb|AFT77965.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Black
Sea 11']
Length = 361
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 160/234 (68%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D + + + Q+ + + ++ E +D +M +MA EE+ A E +
Sbjct: 35 FRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEMREMAQEEMKEAKAEIE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY RY++ +GW+ E+V
Sbjct: 93 RLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVN 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 153 ANEGEHGGYKEVIANVSGDGVYGVLKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 ESQAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|366163504|ref|ZP_09463259.1| peptide chain release factor 1 [Acetivibrio cellulolyticus CD2]
Length = 360
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 175/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A E R + + ++ P + EY K KE +L++ + E + +EI
Sbjct: 1 MFDRLQAAENRYEEMNHKLSDPAVIENQDEYRKLMKEHAELQELVGKYGEYKKVTQEIAD 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ + DKD +M EL A + ++++ L LLPKD DE+D I+E+R G G
Sbjct: 61 AKELLND-KLDKDFREMVEMELKEAEEGLEKIKKELKILLLPKDPNDEKDVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+MY RY+++ GWK E++ +++ G+KE AI G G + KLKFESG
Sbjct: 120 GEEAALFAGVLFRMYTRYAERCGWKTEMLDSNPTEIGGFKEVVFAIEGNGAFSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE +GR+HTS V+VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRIPETEANGRIHTSTVTVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+THIPTG+ + QD+RSQ+ KD
Sbjct: 240 SAIRITHIPTGLVVCCQDQRSQYKNKD 266
>gi|296116158|ref|ZP_06834776.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
gi|295977264|gb|EFG84024.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
Length = 353
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 167/237 (70%), Gaps = 4/237 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI 148
S A +S+A++E +L + ++ LR ++ + ++L+ +D +M +A EL
Sbjct: 27 SGAAFSQASREFAELDPIVAKVNALRATEQAVQDTQALL----DDPEMRGLAESELAELR 82
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
L+ + ++LP+D+AD+R ILE+R GG+EA+LFA +F Y+RY+ ++GW+F
Sbjct: 83 RRIPELEHDIRIAMLPRDEADDRSAILEIRPAAGGDEAALFAGQMFGAYQRYADQRGWRF 142
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ ES+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+L
Sbjct: 143 EILEYDESELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAVL 202
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
P+A+EVDV + + DLRID YR+ G+GGQH N T SAVR+TH+P+G+ +++Q+E+SQH
Sbjct: 203 PEAEEVDVEINDNDLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVAMQEEKSQH 259
>gi|91776824|ref|YP_546580.1| peptide chain release factor 1 [Methylobacillus flagellatus KT]
gi|119361559|sp|Q1GYE8.1|RF1_METFK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91710811|gb|ABE50739.1| bacterial peptide chain release factor 1 (bRF-1) [Methylobacillus
flagellatus KT]
Length = 360
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 141/197 (71%), Gaps = 1/197 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M + A EE + ++ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 71 DPEMKEFAQEETEAGKQKLDDIEKQLQKLLLPKDPNDERNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++GWK E+V ES++ GYKE A I G G Y KLKFESG HRVQRVP T
Sbjct: 131 LFRMYSRYAERQGWKVEIVSANESEVGGYKEIIAKIEGFGAYSKLKFESGGHRVQRVPET 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA+LP+ DEV DV + D+RIDT+R+ G+GGQH N T+SAVR+TH P
Sbjct: 191 ETQGRIHTSACTVAVLPEVDEVSDVTINPADIRIDTFRASGAGGQHINKTDSAVRITHFP 250
Query: 312 TGMTISIQDERSQHMVK 328
TG+ + QD RSQH K
Sbjct: 251 TGIVVECQDGRSQHSNK 267
>gi|404494363|ref|YP_006718469.1| peptide chain release factor 1 [Pelobacter carbinolicus DSM 2380]
gi|119361572|sp|Q3A129.1|RF1_PELCD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77546366|gb|ABA89928.1| peptide chain release factor 1 [Pelobacter carbinolicus DSM 2380]
Length = 356
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 173/259 (66%), Gaps = 4/259 (1%)
Query: 72 IERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R +E L++ P+ + + + +E +L + + E + ++I+G + L+ +
Sbjct: 9 VEDRFREVEGLLSDPQVVSQQKRFLELTREHAELSSVVAVYREYKRVSEDIEGNRELLQD 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D +M +MA EL + L L LLPKD D+++ ILE+RAGTGG+EA+LF
Sbjct: 69 S--DPEMREMAKAELPELEAHREELAQQLKVLLLPKDPNDDKNVILEIRAGTGGDEAALF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+MY R+++ +GWK E + V++S+ G+KE A ISG VY +LK+ESG HRVQRV
Sbjct: 127 AGDLFRMYSRFAEGQGWKVETMSVSDSEAGGFKEIIAMISGNRVYSQLKYESGTHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSA +VA+LP+A++VDV + DLRID YR+ G+GGQH N T SAVR+TH
Sbjct: 187 PETEAQGRIHTSACTVAVLPEAEDVDVDIDPTDLRIDVYRASGAGGQHVNKTESAVRITH 246
Query: 310 IPTGMTISIQDERSQHMVK 328
+PTG+ +S QDE+SQH K
Sbjct: 247 VPTGVVVSCQDEKSQHKNK 265
>gi|388547180|ref|ZP_10150448.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
gi|388274755|gb|EIK94349.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
Length = 360
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKEQLVVLEGNLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGENVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DT+RS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDERVAIEINPADLRVDTFRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH NTT+SA+R+TH+PTG + Q+ERSQH
Sbjct: 237 QHVNTTDSAIRITHLPTGTVVECQEERSQH 266
>gi|419837892|ref|ZP_14361330.1| peptide chain release factor 1 [Vibrio cholerae HC-46B1]
gi|421343895|ref|ZP_15794298.1| peptide chain release factor 1 [Vibrio cholerae HC-43B1]
gi|421354836|ref|ZP_15805168.1| peptide chain release factor 1 [Vibrio cholerae HE-45]
gi|423735847|ref|ZP_17709041.1| peptide chain release factor 1 [Vibrio cholerae HC-41B1]
gi|424010185|ref|ZP_17753119.1| peptide chain release factor 1 [Vibrio cholerae HC-44C1]
gi|395939975|gb|EJH50656.1| peptide chain release factor 1 [Vibrio cholerae HC-43B1]
gi|395953961|gb|EJH64574.1| peptide chain release factor 1 [Vibrio cholerae HE-45]
gi|408629471|gb|EKL02163.1| peptide chain release factor 1 [Vibrio cholerae HC-41B1]
gi|408856440|gb|EKL96135.1| peptide chain release factor 1 [Vibrio cholerae HC-46B1]
gi|408863437|gb|EKM02920.1| peptide chain release factor 1 [Vibrio cholerae HC-44C1]
Length = 362
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|229588283|ref|YP_002870402.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25]
gi|259585227|sp|C3KDC6.1|RF1_PSEFS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229360149|emb|CAY47006.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25]
Length = 360
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 163/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVATYKHLTKVQADLEGAQALLKDS--DPDMREMAVEEVREAKEK 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LAELEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|327404087|ref|YP_004344925.1| peptide chain release factor 1 (bRF-1) [Fluviicola taffensis DSM
16823]
gi|327319595|gb|AEA44087.1| bacterial peptide chain release factor 1 (bRF-1) [Fluviicola
taffensis DSM 16823]
Length = 359
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/259 (44%), Positives = 167/259 (64%), Gaps = 7/259 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL-- 126
AI R + ++ PE + Y K NKE R L + + + ++ + +D LKS
Sbjct: 10 AIHFRFIEVGKMITDPEIISDMERYVKLNKEYRDLEE---VDAAYKSYKNVLDNLKSSKE 66
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E D +M +MA E+ + ++ + L+PKD D+++ I+E+RAGTGG+EA
Sbjct: 67 MLEVETDPEMREMAKMEINELEQQRPIIEEEIKVLLIPKDPEDDKNAIIELRAGTGGDEA 126
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+F D+++MY Y ++ GW +E+V +E +GYKE S +ISG G+YG LKFESG+HRV
Sbjct: 127 CIFVEDIYRMYTMYFKEMGWAYEIVNSSEGSAKGYKEVSMSISGAGIYGMLKFESGVHRV 186
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GRVHTSA++VA+LP+A+EVD L D+R DT+R+ G+GGQH N T SA+R
Sbjct: 187 QRVPETESQGRVHTSAITVAVLPEAEEVDFELDMNDVRKDTFRASGAGGQHINKTESAIR 246
Query: 307 VTHIPTGMTISIQDERSQH 325
+THIPTG + QD RSQH
Sbjct: 247 LTHIPTGTVVECQDGRSQH 265
>gi|449124523|ref|ZP_21760842.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|449129526|ref|ZP_21765756.1| peptide chain release factor 1 [Treponema denticola SP37]
gi|448942854|gb|EMB23748.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|448945574|gb|EMB26444.1| peptide chain release factor 1 [Treponema denticola SP37]
Length = 361
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRNRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+EV+ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|398952330|ref|ZP_10674719.1| peptide chain release factor 1 [Pseudomonas sp. GM33]
gi|426411475|ref|YP_007031574.1| peptide chain release factor 1 [Pseudomonas sp. UW4]
gi|398155258|gb|EJM43708.1| peptide chain release factor 1 [Pseudomonas sp. GM33]
gi|426269692|gb|AFY21769.1| peptide chain release factor 1 [Pseudomonas sp. UW4]
Length = 360
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 162/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + EL Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 38 YSKEYAEVEPI---VGTYKELLKVQDDLEGAQALLKDS--DPDMREMAVEEVREAKERLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 TLEADLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|330863233|emb|CBX73359.1| peptide chain release factor 1 [Yersinia enterocolitica W22703]
Length = 330
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA +EL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDIEAAEMML----DDPEMREMAQDELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|406596337|ref|YP_006747467.1| peptide chain release factor 1 [Alteromonas macleodii ATCC 27126]
gi|407683285|ref|YP_006798459.1| peptide chain release factor 1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407687226|ref|YP_006802399.1| peptide chain release factor 1 [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|406373658|gb|AFS36913.1| peptide chain release factor 1 [Alteromonas macleodii ATCC 27126]
gi|407244896|gb|AFT74082.1| peptide chain release factor 1 [Alteromonas macleodii str. 'English
Channel 673']
gi|407290606|gb|AFT94918.1| peptide chain release factor 1 [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 361
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 160/234 (68%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D + + + Q+ + + ++ E +D +M +MA EE+ A E +
Sbjct: 35 FRNLSKEFSQLEDVVAGFNAYQQAQENLASAQEMLNE--DDAEMREMAQEEMKDAKAEIE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
RL++ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY RY++ +GW+ E+V
Sbjct: 93 RLETELQVLLLPKDPNDDNNCFLEIRAGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVN 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 153 ANEGEHGGYKEVIANVSGDGVYGVLKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 ESQAIEINPAELRIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|417855599|ref|ZP_12500702.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338215887|gb|EGP02105.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 330
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|313672261|ref|YP_004050372.1| peptide chain release factor 1 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939017|gb|ADR18209.1| bacterial peptide chain release factor 1 (bRF-1) [Calditerrivibrio
nitroreducens DSM 19672]
Length = 356
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 162/232 (69%), Gaps = 1/232 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + +KE L+ + E + Q+ I ++++ + DKD++++A EL ++ +
Sbjct: 31 YQQLSKEHSDLKPIVEKYLEYKDVQRSIKEAEAILKDGG-DKDLIELAEIELAEGKEKLE 89
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DE++ +E+RAGTGGEE++LFA D+ +MY RY++K GWK E++
Sbjct: 90 KISEELKILLLPKDPFDEKNIYIEIRAGTGGEESALFAADLLRMYIRYAEKCGWKTEIID 149
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E+ + GYKE + G Y KLK+E+G HRVQR+P TE SGR+HTSA +VA++P+AD
Sbjct: 150 ANETGMGGYKEVILLVKGKNAYSKLKYEAGGHRVQRIPETESSGRIHTSACTVAVIPEAD 209
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
+VDV + +DLRID YRS G+GGQH NTT+SAVR+THIPTG+ +S QDERSQ
Sbjct: 210 DVDVHIDPKDLRIDVYRSSGAGGQHVNTTDSAVRITHIPTGIVVSCQDERSQ 261
>gi|258621065|ref|ZP_05716099.1| Peptide chain release factor 1 [Vibrio mimicus VM573]
gi|258626137|ref|ZP_05720985.1| Peptide chain release factor 1 [Vibrio mimicus VM603]
gi|262170842|ref|ZP_06038520.1| peptide chain release factor 1 [Vibrio mimicus MB-451]
gi|449146778|ref|ZP_21777540.1| Peptide chain release factor 1 [Vibrio mimicus CAIM 602]
gi|258581492|gb|EEW06393.1| Peptide chain release factor 1 [Vibrio mimicus VM603]
gi|258586453|gb|EEW11168.1| Peptide chain release factor 1 [Vibrio mimicus VM573]
gi|261891918|gb|EEY37904.1| peptide chain release factor 1 [Vibrio mimicus MB-451]
gi|449077631|gb|EMB48603.1| Peptide chain release factor 1 [Vibrio mimicus CAIM 602]
Length = 362
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|410447428|ref|ZP_11301524.1| peptide chain release factor 1 [SAR86 cluster bacterium SAR86E]
gi|409979703|gb|EKO36461.1| peptide chain release factor 1 [SAR86 cluster bacterium SAR86E]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 163/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A +++ NKE ++ + L L+ + E++G K L+ S D +++++A E+ ++
Sbjct: 34 AHFTQLNKEYSEITPIVDLFKLLQDAEAELNGAKELL--DSTDAELIELAKIEVNSNQEK 91
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L LLPKD+AD+ LE+RAG GG+EA++FA D+F+MY R S+++GWK E+
Sbjct: 92 IADLEKNLKFMLLPKDEADDGAAYLEIRAGAGGDEAAIFAADLFRMYSRLSERQGWKLEI 151
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
V S+ G KEA I+G GV+ LKFESG+HRVQRVP TE GR+HTS V+VAILP+
Sbjct: 152 VNTKPSEPSGLKEAVVKINGQGVFKFLKFESGVHRVQRVPETESQGRIHTSTVTVAILPE 211
Query: 271 ADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DEV D+ + +LR+DTYR+ G+GGQH N T+SAVR+THIPTG+ + QD+RSQH
Sbjct: 212 VDEVQDIEIDKSELRVDTYRASGAGGQHVNKTDSAVRLTHIPTGVVVECQDDRSQH 267
>gi|300313560|ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1]
gi|300076345|gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum
seropedicae SmR1]
Length = 359
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/201 (55%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I G+G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QD+RSQH K
Sbjct: 247 THLPTGIVVECQDDRSQHKNK 267
>gi|388470749|ref|ZP_10144958.1| peptide chain release factor 1 [Pseudomonas synxantha BG33R]
gi|388007446|gb|EIK68712.1| peptide chain release factor 1 [Pseudomonas synxantha BG33R]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 163/236 (69%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 33 AKFRAYSKEYAEVEPIVATYKHLSKVQADLEGAQALLKD--NDPDMREMAVEEVREAKEK 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LAELEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|314934187|ref|ZP_07841548.1| peptide chain release factor 1 [Staphylococcus caprae C87]
gi|313653092|gb|EFS16853.1| peptide chain release factor 1 [Staphylococcus caprae C87]
Length = 358
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIEEMLKE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ +DM EE E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|223043916|ref|ZP_03613957.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|417906667|ref|ZP_12550448.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
gi|222442631|gb|EEE48735.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|341597669|gb|EGS40215.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
Length = 358
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIEEMLKE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ +DM EE E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|261209906|ref|ZP_05924207.1| peptide chain release factor 1 [Vibrio sp. RC341]
gi|260841092|gb|EEX67617.1| peptide chain release factor 1 [Vibrio sp. RC341]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|432372500|ref|ZP_19615545.1| peptide chain release factor 1 [Escherichia coli KTE11]
gi|430896993|gb|ELC19220.1| peptide chain release factor 1 [Escherichia coli KTE11]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 167/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +ELC A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELCEAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|420212554|ref|ZP_14717903.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
gi|394279675|gb|EJE23978.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
Length = 358
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + +TK++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE E ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ES+ GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESNHGGYKEVSFSVSGTGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+A++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|383310198|ref|YP_005363008.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871470|gb|AFF23837.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K WK EV+ ES+ GYKE ++G GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|359782584|ref|ZP_09285804.1| peptide chain release factor 1 [Pseudomonas psychrotolerans L19]
gi|359369404|gb|EHK69975.1| peptide chain release factor 1 [Pseudomonas psychrotolerans L19]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 160/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ +KE +L +E R Q +++G ++L+ + D D+ +MA EE+ A
Sbjct: 34 QFRAYSKEYAELEPVSQAFTEYRKVQADLEGAQALLKDS--DPDLREMAEEEVGTAKARL 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L+ L + +LP+D D R+ LE+RAGTGG+EA++FA D+F+MY RY++++GW+ EV+
Sbjct: 92 QELEDELQRMMLPRDPNDGRNVFLEIRAGTGGDEAAIFAGDLFRMYSRYAERQGWRLEVL 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 152 SENEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEP 211
Query: 272 DEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + DLR+DTYRS G+GGQH N T+SAVR+TH+PTG+ + Q+ERSQH
Sbjct: 212 DEQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVECQEERSQH 266
>gi|330502033|ref|YP_004378902.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
gi|328916319|gb|AEB57150.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
+++ +KE ++ + ELR Q +++G ++L+ + D D+ +MA E+ A +
Sbjct: 33 SQFRAYSKEYAEIEPVIATFRELRKVQGDLEGAQALLKDS--DPDLREMAELEVDQAKEA 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ EV
Sbjct: 91 LVGLEDKLQRMLLPKDPNDGRNVYLEIRAGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEV 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + G+KE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSANEGEHGGFKEVIARVEGDNVYAKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPE 210
Query: 271 ADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + DLR+DTYRS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 211 PDEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|298497806|ref|ZP_07007613.1| peptide chain release factor 1 [Vibrio cholerae MAK 757]
gi|297542139|gb|EFH78189.1| peptide chain release factor 1 [Vibrio cholerae MAK 757]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|269961569|ref|ZP_06175931.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3]
gi|424045196|ref|ZP_17782762.1| peptide chain release factor 1 [Vibrio cholerae HENC-03]
gi|269833610|gb|EEZ87707.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3]
gi|408886639|gb|EKM25309.1| peptide chain release factor 1 [Vibrio cholerae HENC-03]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 169/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTNCFQAYQQAQDDLIAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A D +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKDAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|194335257|ref|YP_002017051.1| peptide chain release factor 1 [Pelodictyon phaeoclathratiforme
BU-1]
gi|238693362|sp|B4SAR5.1|RF1_PELPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|194307734|gb|ACF42434.1| peptide chain release factor 1 [Pelodictyon phaeoclathratiforme
BU-1]
Length = 357
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 176/263 (66%), Gaps = 4/263 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAE--YSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ + LE L++ P A+ + + K NKE LR+ + + E+D
Sbjct: 1 MLDKLQSIKEKHLDLEQLLSDPNAAADQVRFRKLNKEYSDLREIVQAYDLYAATKTELDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + D +M ++ E+ + L+ L LLPK++AD R+ I+E+RAGTG
Sbjct: 61 SRQLL-KSESDAEMKELVQAEISELQKKLPELEQQLKILLLPKEEADSRNVIIEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
GEEA+LFA D+ +MY+RY++ +GW+ E + ES + G ++E + +++G VYG +K+ES
Sbjct: 120 GEEAALFAADLTRMYQRYAEHQGWQCETLHFNESSVPGGFREITLSVNGHDVYGTMKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSAVSVA+LP+A+EVDV +R EDLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPDTETQGRIHTSAVSVAVLPEAEEVDVEIRREDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
+AVR+TH+PTG+ + Q++RSQ
Sbjct: 240 ETAVRITHMPTGIVSACQEQRSQ 262
>gi|398869864|ref|ZP_10625221.1| peptide chain release factor 1 [Pseudomonas sp. GM74]
gi|398914038|ref|ZP_10656762.1| peptide chain release factor 1 [Pseudomonas sp. GM49]
gi|398923536|ref|ZP_10660756.1| peptide chain release factor 1 [Pseudomonas sp. GM48]
gi|398175152|gb|EJM62919.1| peptide chain release factor 1 [Pseudomonas sp. GM48]
gi|398179247|gb|EJM66863.1| peptide chain release factor 1 [Pseudomonas sp. GM49]
gi|398210276|gb|EJM96928.1| peptide chain release factor 1 [Pseudomonas sp. GM74]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 162/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + EL Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 38 YSKEYAEVEPI---VGAYKELLKVQDDLEGAQALLKDS--DPDMREMAVEEVREAKERLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 TLEADLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|21672964|ref|NP_661029.1| peptide chain release factor 1 [Chlorobium tepidum TLS]
gi|28201874|sp|Q8KG45.1|RF1_CHLTE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|21646023|gb|AAM71371.1| peptide chain release factor 1 [Chlorobium tepidum TLS]
Length = 357
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 173/263 (65%), Gaps = 4/263 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ + +E ++ PE A + K NKE L++ + E +K++D
Sbjct: 1 MFDKLQSIKDKFQTIEQQLSDPEVVADQNRFRKLNKEYSSLKEIVRAYDEWSRTKKQLDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
S+ + D +M + EE + +L+ L LLPKD+AD R+ I+E+RAGTG
Sbjct: 61 AHSM-QKNENDPEMRALVEEEAGELQERLPKLEQQLKILLLPKDEADSRNAIIEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFES 241
G+EA LFA D+ +MY+RY++++GW + + V+E + G KE S +SG VYG LKFES
Sbjct: 120 GDEAGLFAADLMRMYQRYAERQGWSCQTLEVSEGSVPGSLKEVSLEVSGHNVYGILKFES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV +R EDL IDT+RSGG GGQ+ N
Sbjct: 180 GVHRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRKEDLLIDTFRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
+AVR+TH+P+G+ ++ Q+ERSQ
Sbjct: 240 ETAVRITHVPSGIVVACQEERSQ 262
>gi|379796442|ref|YP_005326443.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873435|emb|CCE59774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 358
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 175/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + ++K++E+ ++ L+ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKSKKEELTDIEELLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+EDK+ ++M EE E L+ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 -TEDKEEIEMLKEESSGIKAELPNLEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESEGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|398854310|ref|ZP_10610880.1| peptide chain release factor 1 [Pseudomonas sp. GM80]
gi|398236402|gb|EJN22187.1| peptide chain release factor 1 [Pseudomonas sp. GM80]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 165/239 (69%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A +++ +KE ++ + +L + Q +++ ++L+ + D DM +MA EE+ A
Sbjct: 30 ADQSKFRAYSKEYAEIEPVVQGYKKLLSVQSDLESAQALLKD--NDPDMREMAVEEVREA 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+
Sbjct: 88 KESLITLEADLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWR 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
E++ E + GYKE A I G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+
Sbjct: 148 VEILSENEGEHGGYKEVIARIEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAV 207
Query: 268 LPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+ DE + + + DLR+DT+RS G+GGQH NTT+SA+R+THIPTG + Q+ERSQH
Sbjct: 208 LPEPDEREAIEINPADLRVDTFRSSGAGGQHVNTTDSAIRITHIPTGTVVECQEERSQH 266
>gi|88861344|ref|ZP_01135974.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata
D2]
gi|88816610|gb|EAR26435.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata
D2]
Length = 361
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 156/230 (67%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L D + + R ++++ + + + ED DM DMA +E A + + L
Sbjct: 39 SKEYAELEDVSKVFNAYRQAEQDLVAAEEMFKD--EDPDMRDMAQDEFKAAKAQLETLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L +LPKD D + LEVRAGTGG+EA++FA D+F+MY R+++ + WK E+V E
Sbjct: 97 ELQVLMLPKDPKDNNNVYLEVRAGTGGDEAAIFAGDLFRMYARFAETQKWKVEIVSANEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A ISG GVYGKLKFESG+HRVQRVP TE GRVHTSA +VA++P+ E +
Sbjct: 157 EHGGYKEVIANISGTGVYGKLKFESGVHRVQRVPETESQGRVHTSACTVAVMPEIPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + D+++DT+R+ G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 217 IEINAADIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
>gi|398889389|ref|ZP_10643232.1| peptide chain release factor 1 [Pseudomonas sp. GM55]
gi|398189511|gb|EJM76785.1| peptide chain release factor 1 [Pseudomonas sp. GM55]
Length = 360
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + ++ +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 38 YSKEYAEVEPI---VNAYKQLLKVQADLEGAQALLKDS--DPDMREMAVEEVREAKERLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 TLEADLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|419830631|ref|ZP_14354116.1| peptide chain release factor 1 [Vibrio cholerae HC-1A2]
gi|419834313|ref|ZP_14357768.1| peptide chain release factor 1 [Vibrio cholerae HC-61A2]
gi|422308120|ref|ZP_16395273.1| peptide chain release factor 1 [Vibrio cholerae CP1035(8)]
gi|422918020|ref|ZP_16952338.1| peptide chain release factor 1 [Vibrio cholerae HC-02A1]
gi|423822922|ref|ZP_17716932.1| peptide chain release factor 1 [Vibrio cholerae HC-55C2]
gi|423856886|ref|ZP_17720738.1| peptide chain release factor 1 [Vibrio cholerae HC-59A1]
gi|423883189|ref|ZP_17724326.1| peptide chain release factor 1 [Vibrio cholerae HC-60A1]
gi|423998446|ref|ZP_17741698.1| peptide chain release factor 1 [Vibrio cholerae HC-02C1]
gi|424017340|ref|ZP_17757169.1| peptide chain release factor 1 [Vibrio cholerae HC-55B2]
gi|424020264|ref|ZP_17760050.1| peptide chain release factor 1 [Vibrio cholerae HC-59B1]
gi|424625641|ref|ZP_18064102.1| peptide chain release factor 1 [Vibrio cholerae HC-50A1]
gi|424630124|ref|ZP_18068411.1| peptide chain release factor 1 [Vibrio cholerae HC-51A1]
gi|424634171|ref|ZP_18072271.1| peptide chain release factor 1 [Vibrio cholerae HC-52A1]
gi|424637249|ref|ZP_18075257.1| peptide chain release factor 1 [Vibrio cholerae HC-55A1]
gi|424641158|ref|ZP_18079041.1| peptide chain release factor 1 [Vibrio cholerae HC-56A1]
gi|424649226|ref|ZP_18086889.1| peptide chain release factor 1 [Vibrio cholerae HC-57A1]
gi|443528140|ref|ZP_21094188.1| peptide chain release factor 1 [Vibrio cholerae HC-78A1]
gi|341636902|gb|EGS61596.1| peptide chain release factor 1 [Vibrio cholerae HC-02A1]
gi|408011751|gb|EKG49555.1| peptide chain release factor 1 [Vibrio cholerae HC-50A1]
gi|408017835|gb|EKG55316.1| peptide chain release factor 1 [Vibrio cholerae HC-52A1]
gi|408022947|gb|EKG60131.1| peptide chain release factor 1 [Vibrio cholerae HC-56A1]
gi|408023380|gb|EKG60552.1| peptide chain release factor 1 [Vibrio cholerae HC-55A1]
gi|408032175|gb|EKG68767.1| peptide chain release factor 1 [Vibrio cholerae HC-57A1]
gi|408054578|gb|EKG89546.1| peptide chain release factor 1 [Vibrio cholerae HC-51A1]
gi|408618609|gb|EKK91682.1| peptide chain release factor 1 [Vibrio cholerae CP1035(8)]
gi|408620404|gb|EKK93416.1| peptide chain release factor 1 [Vibrio cholerae HC-1A2]
gi|408634898|gb|EKL07133.1| peptide chain release factor 1 [Vibrio cholerae HC-55C2]
gi|408640491|gb|EKL12283.1| peptide chain release factor 1 [Vibrio cholerae HC-59A1]
gi|408641313|gb|EKL13094.1| peptide chain release factor 1 [Vibrio cholerae HC-60A1]
gi|408649135|gb|EKL20452.1| peptide chain release factor 1 [Vibrio cholerae HC-61A2]
gi|408852801|gb|EKL92623.1| peptide chain release factor 1 [Vibrio cholerae HC-02C1]
gi|408859848|gb|EKL99502.1| peptide chain release factor 1 [Vibrio cholerae HC-55B2]
gi|408867358|gb|EKM06720.1| peptide chain release factor 1 [Vibrio cholerae HC-59B1]
gi|443453656|gb|ELT17475.1| peptide chain release factor 1 [Vibrio cholerae HC-78A1]
Length = 362
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|425738331|ref|ZP_18856596.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
gi|425480004|gb|EKU47174.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
Length = 359
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 174/258 (67%), Gaps = 9/258 (3%)
Query: 72 IERRSACLENLVNQPEASPAE-----YSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L L++ P+ YSK +L+K ++ + + +++I ++ +
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRAYSKEQADLQK---TVEVYRHYKQVKEDISEIEIM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E ++DKD +DM EEL + +L+ L L+PKD D+++ I+E+RA GG+EA
Sbjct: 65 LGE-TKDKDEVDMLKEELSDLKPQVPQLEEELKFLLIPKDPNDDKNVIMEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+F+MY RYS+ G+K +VV + SD GYKE S I G G Y KLK+E+G HRV
Sbjct: 124 AIFAGDLFRMYTRYSESIGYKTDVVEMNASDHGGYKEISFMIQGQGAYSKLKYENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+A++V+V +RNED++IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTSTVAVLPEAEDVEVEIRNEDIKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQ 324
+TH+PTG ++ QDE+SQ
Sbjct: 244 ITHLPTGTVVTSQDEKSQ 261
>gi|343518805|ref|ZP_08755793.1| peptide chain release factor 1 [Haemophilus pittmaniae HK 85]
gi|343393384|gb|EGV05941.1| peptide chain release factor 1 [Haemophilus pittmaniae HK 85]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 162/238 (68%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L T + + L+ + E K+M +M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWNQLNTNIADAE----LMLDDPEMKEMAEMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|288574777|ref|ZP_06393134.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570518|gb|EFC92075.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 358
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 168/240 (70%), Gaps = 8/240 (3%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEE---L 144
++P E K+ +L + + E + + E++ K+L+ S+D +M +A EE L
Sbjct: 28 SNPKELQSLGKKHAELSEIVEAYEEYKRIRSELEEAKALL--DSDDPEMAQLAKEEVHSL 85
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
++E+++ +LLL LPKD D++ ++E+RAGTGG+EA+LFA D+F+MY R+++++
Sbjct: 86 EPLLEEQEKKVTLLL---LPKDPNDDKSVMVEIRAGTGGDEAALFASDLFRMYSRFAEQR 142
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
W E++ E+++ GYKE + G G Y LK+ESG+HRVQRVP TE GR+HTSA +
Sbjct: 143 RWSVEILDANETEIGGYKEIVFKVDGQGAYSDLKYESGVHRVQRVPATESGGRIHTSAAT 202
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VA+LP+A+E DV +R EDL+IDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ QDERSQ
Sbjct: 203 VAVLPEAEEFDVEVRQEDLKIDTYRSSGAGGQHVNMTDSAVRITHLPTGIVVTCQDERSQ 262
>gi|417840267|ref|ZP_12486411.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19107]
gi|341949077|gb|EGT75687.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19107]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 162/238 (68%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE + I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKVEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|149377994|ref|ZP_01895719.1| peptide chain release factor 1 [Marinobacter algicola DG893]
gi|149357703|gb|EDM46200.1| peptide chain release factor 1 [Marinobacter algicola DG893]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 143/194 (73%), Gaps = 1/194 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM MA EEL LA + + L L + +LPKD D ++ LEVRAGTGG+EA++FA D
Sbjct: 73 DADMRAMAEEELGLAEQKGEELDEELQRLMLPKDPNDGKNVFLEVRAGTGGDEAAIFAGD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+FKMY RY++++ W+ EV+ +E + GYKE A I+G VYG LKFESG HRVQRVP T
Sbjct: 133 LFKMYMRYAERQRWQVEVISASEGEHGGYKEVIARIAGSAVYGALKFESGAHRVQRVPET 192
Query: 253 EKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE + V + DLR+DT+R+ G+GGQH N T+SA+R+THIP
Sbjct: 193 ESQGRIHTSACTVAVMPEADETEAVEINKSDLRVDTFRASGAGGQHVNKTDSAIRITHIP 252
Query: 312 TGMTISIQDERSQH 325
TG+ + Q+ERSQH
Sbjct: 253 TGIVVECQEERSQH 266
>gi|398860967|ref|ZP_10616608.1| peptide chain release factor 1 [Pseudomonas sp. GM79]
gi|398233986|gb|EJN19882.1| peptide chain release factor 1 [Pseudomonas sp. GM79]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPI---VGTYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKEQLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 EIEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|268316168|ref|YP_003289887.1| peptide chain release factor 1 [Rhodothermus marinus DSM 4252]
gi|262333702|gb|ACY47499.1| peptide chain release factor 1 [Rhodothermus marinus DSM 4252]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 172/262 (65%), Gaps = 15/262 (5%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
I+RR + ++ PE A P ++ +E LR + I E + L+ LI
Sbjct: 10 IKRRYEEVTQALSDPEVAADPKRLAELGREHASLRAVVEAIEAYERLLAEQESLRELIRT 69
Query: 130 CSEDKDMLDMATEELCL------AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
S D +++ MA EL A++E+ RL+ L+P+D+ D R+ I+E+RAGTGG
Sbjct: 70 ES-DPELIRMARHELEELEERLPAVEEDLRLR------LIPQDEMDRRNAIVEIRAGTGG 122
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
+EA+LFA D+F+MY R++++KGWK EV+ + + G+KE ++ G VYG +K+ESG+
Sbjct: 123 DEAALFAGDLFRMYSRFAERKGWKLEVLDASPGTVGGFKEIIFSLKGPDVYGTMKYESGV 182
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA SV +LP+A+EVDV +R EDLRID +R+ G GGQH N T S
Sbjct: 183 HRVQRVPATESQGRIHTSAASVVVLPEAEEVDVEIRPEDLRIDVFRASGPGGQHVNRTES 242
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+TH+PTG+ ++ QDE+SQH
Sbjct: 243 AVRITHVPTGIVVACQDEKSQH 264
>gi|254468209|ref|ZP_05081615.1| peptide chain release factor 1 [beta proteobacterium KB13]
gi|207087019|gb|EDZ64302.1| peptide chain release factor 1 [beta proteobacterium KB13]
Length = 358
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 148/214 (69%), Gaps = 7/214 (3%)
Query: 122 GLKSLIYECSEDKDML------DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCIL 175
G K L+ E K+ML + A EE+ + DE +S L L+PKD D+++ L
Sbjct: 54 GYKKLVKNIEEAKEMLSDPEMKEFAQEEIDNSKDEIINFESKLQTLLIPKDPNDDKNIFL 113
Query: 176 EVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYG 235
E+RAGTGG+E++LFA D+++MY RY+++ W EV+ ES L GYKE A I+G G Y
Sbjct: 114 EIRAGTGGDESALFAADLYRMYTRYAERNNWNVEVISSNESGLGGYKEIIAKINGDGAYS 173
Query: 236 KLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSG 294
KLKFESG HRVQRVP TE GR+HTSA +VA+LP+ADE+ DV + D+RIDTYR+ G+G
Sbjct: 174 KLKFESGGHRVQRVPDTETQGRIHTSACTVAVLPEADEIEDVDINPADIRIDTYRASGAG 233
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GQH N T+SAVR+TH PTG+ + QD+RSQH K
Sbjct: 234 GQHINKTDSAVRITHEPTGIVVECQDDRSQHRNK 267
>gi|123442667|ref|YP_001006644.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332161451|ref|YP_004298028.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386308698|ref|YP_006004754.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241655|ref|ZP_12868180.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420258237|ref|ZP_14760976.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433549287|ref|ZP_20505331.1| Peptide chain release factor 1 [Yersinia enterocolitica IP 10393]
gi|166223618|sp|A1JRU0.1|RF1_YERE8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|122089628|emb|CAL12478.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318605428|emb|CBY26926.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665681|gb|ADZ42325.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351778920|gb|EHB21050.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404514373|gb|EKA28169.1| peptide chain release factor 1 [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431788422|emb|CCO68371.1| Peptide chain release factor 1 [Yersinia enterocolitica IP 10393]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R+ Q +I+ + ++ +D +M +MA +EL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWRSVQDDIEAAEMML----DDPEMREMAQDELKEAKARSEELEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GV+G+LKFESG HRVQRVP TE GR+HTSA +VA++P E ++
Sbjct: 155 EHGGYKEVIAKVSGDGVFGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|15642178|ref|NP_231810.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|147674456|ref|YP_001217695.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|153213234|ref|ZP_01948646.1| peptide chain release factor 1 [Vibrio cholerae 1587]
gi|153801649|ref|ZP_01956235.1| peptide chain release factor 1 [Vibrio cholerae MZO-3]
gi|153818801|ref|ZP_01971468.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457]
gi|153823572|ref|ZP_01976239.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|153825583|ref|ZP_01978250.1| peptide chain release factor 1 [Vibrio cholerae MZO-2]
gi|153828626|ref|ZP_01981293.1| peptide chain release factor 1 [Vibrio cholerae 623-39]
gi|227082304|ref|YP_002810855.1| peptide chain release factor 1 [Vibrio cholerae M66-2]
gi|227118625|ref|YP_002820521.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|229507743|ref|ZP_04397248.1| peptide chain release factor 1 [Vibrio cholerae BX 330286]
gi|229512021|ref|ZP_04401500.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|229513825|ref|ZP_04403287.1| peptide chain release factor 1 [Vibrio cholerae TMA 21]
gi|229519157|ref|ZP_04408600.1| peptide chain release factor 1 [Vibrio cholerae RC9]
gi|229522130|ref|ZP_04411547.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80]
gi|229524175|ref|ZP_04413580.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426]
gi|229528814|ref|ZP_04418204.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)]
gi|229607288|ref|YP_002877936.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236]
gi|254291410|ref|ZP_04962203.1| peptide chain release factor 1 [Vibrio cholerae AM-19226]
gi|254849258|ref|ZP_05238608.1| peptide chain release factor 1 [Vibrio cholerae MO10]
gi|255745092|ref|ZP_05419041.1| peptide chain release factor 1 [Vibrio cholera CIRS 101]
gi|262167528|ref|ZP_06035234.1| peptide chain release factor 1 [Vibrio cholerae RC27]
gi|360036056|ref|YP_004937819.1| peptide chain release factor 1 [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741990|ref|YP_005333959.1| peptide chain release factor 1 [Vibrio cholerae IEC224]
gi|384425148|ref|YP_005634506.1| Peptide chain release factor 1 [Vibrio cholerae LMA3984-4]
gi|417814208|ref|ZP_12460861.1| peptide chain release factor 1 [Vibrio cholerae HC-49A2]
gi|417817945|ref|ZP_12464574.1| peptide chain release factor 1 [Vibrio cholerae HCUF01]
gi|417825416|ref|ZP_12472004.1| peptide chain release factor 1 [Vibrio cholerae HE48]
gi|418335187|ref|ZP_12944100.1| peptide chain release factor 1 [Vibrio cholerae HC-06A1]
gi|418338799|ref|ZP_12947693.1| peptide chain release factor 1 [Vibrio cholerae HC-23A1]
gi|418346721|ref|ZP_12951481.1| peptide chain release factor 1 [Vibrio cholerae HC-28A1]
gi|418350483|ref|ZP_12955214.1| peptide chain release factor 1 [Vibrio cholerae HC-43A1]
gi|418356235|ref|ZP_12958954.1| peptide chain release factor 1 [Vibrio cholerae HC-61A1]
gi|419827139|ref|ZP_14350638.1| peptide chain release factor 1 [Vibrio cholerae CP1033(6)]
gi|421317810|ref|ZP_15768378.1| peptide chain release factor 1 [Vibrio cholerae CP1032(5)]
gi|421321935|ref|ZP_15772488.1| peptide chain release factor 1 [Vibrio cholerae CP1038(11)]
gi|421325738|ref|ZP_15776262.1| peptide chain release factor 1 [Vibrio cholerae CP1041(14)]
gi|421329397|ref|ZP_15779907.1| peptide chain release factor 1 [Vibrio cholerae CP1042(15)]
gi|421333303|ref|ZP_15783780.1| peptide chain release factor 1 [Vibrio cholerae CP1046(19)]
gi|421336894|ref|ZP_15787355.1| peptide chain release factor 1 [Vibrio cholerae CP1048(21)]
gi|421340321|ref|ZP_15790753.1| peptide chain release factor 1 [Vibrio cholerae HC-20A2]
gi|421348202|ref|ZP_15798579.1| peptide chain release factor 1 [Vibrio cholerae HC-46A1]
gi|421351901|ref|ZP_15802266.1| peptide chain release factor 1 [Vibrio cholerae HE-25]
gi|422897277|ref|ZP_16934723.1| peptide chain release factor 1 [Vibrio cholerae HC-40A1]
gi|422903471|ref|ZP_16938445.1| peptide chain release factor 1 [Vibrio cholerae HC-48A1]
gi|422907355|ref|ZP_16942158.1| peptide chain release factor 1 [Vibrio cholerae HC-70A1]
gi|422914204|ref|ZP_16948710.1| peptide chain release factor 1 [Vibrio cholerae HFU-02]
gi|422923481|ref|ZP_16956632.1| peptide chain release factor 1 [Vibrio cholerae BJG-01]
gi|422926408|ref|ZP_16959422.1| peptide chain release factor 1 [Vibrio cholerae HC-38A1]
gi|423145731|ref|ZP_17133325.1| peptide chain release factor 1 [Vibrio cholerae HC-19A1]
gi|423150407|ref|ZP_17137721.1| peptide chain release factor 1 [Vibrio cholerae HC-21A1]
gi|423154225|ref|ZP_17141406.1| peptide chain release factor 1 [Vibrio cholerae HC-22A1]
gi|423157309|ref|ZP_17144402.1| peptide chain release factor 1 [Vibrio cholerae HC-32A1]
gi|423160879|ref|ZP_17147819.1| peptide chain release factor 1 [Vibrio cholerae HC-33A2]
gi|423165705|ref|ZP_17152430.1| peptide chain release factor 1 [Vibrio cholerae HC-48B2]
gi|423731722|ref|ZP_17705025.1| peptide chain release factor 1 [Vibrio cholerae HC-17A1]
gi|423769007|ref|ZP_17713149.1| peptide chain release factor 1 [Vibrio cholerae HC-50A2]
gi|423895607|ref|ZP_17727354.1| peptide chain release factor 1 [Vibrio cholerae HC-62A1]
gi|423931043|ref|ZP_17731746.1| peptide chain release factor 1 [Vibrio cholerae HC-77A1]
gi|424003159|ref|ZP_17746234.1| peptide chain release factor 1 [Vibrio cholerae HC-17A2]
gi|424006947|ref|ZP_17749917.1| peptide chain release factor 1 [Vibrio cholerae HC-37A1]
gi|424024929|ref|ZP_17764580.1| peptide chain release factor 1 [Vibrio cholerae HC-62B1]
gi|424027816|ref|ZP_17767419.1| peptide chain release factor 1 [Vibrio cholerae HC-69A1]
gi|424587094|ref|ZP_18026673.1| peptide chain release factor 1 [Vibrio cholerae CP1030(3)]
gi|424591886|ref|ZP_18031311.1| peptide chain release factor 1 [Vibrio cholerae CP1037(10)]
gi|424595743|ref|ZP_18035063.1| peptide chain release factor 1 [Vibrio cholerae CP1040(13)]
gi|424599659|ref|ZP_18038838.1| peptide chain release factor 1 [Vibrio Cholerae CP1044(17)]
gi|424602377|ref|ZP_18041518.1| peptide chain release factor 1 [Vibrio cholerae CP1047(20)]
gi|424607352|ref|ZP_18046294.1| peptide chain release factor 1 [Vibrio cholerae CP1050(23)]
gi|424611172|ref|ZP_18050011.1| peptide chain release factor 1 [Vibrio cholerae HC-39A1]
gi|424613984|ref|ZP_18052772.1| peptide chain release factor 1 [Vibrio cholerae HC-41A1]
gi|424617960|ref|ZP_18056632.1| peptide chain release factor 1 [Vibrio cholerae HC-42A1]
gi|424622744|ref|ZP_18061249.1| peptide chain release factor 1 [Vibrio cholerae HC-47A1]
gi|424645708|ref|ZP_18083444.1| peptide chain release factor 1 [Vibrio cholerae HC-56A2]
gi|424653475|ref|ZP_18090855.1| peptide chain release factor 1 [Vibrio cholerae HC-57A2]
gi|424657297|ref|ZP_18094582.1| peptide chain release factor 1 [Vibrio cholerae HC-81A2]
gi|429888058|ref|ZP_19369555.1| Peptide chain release factor 1 [Vibrio cholerae PS15]
gi|440710369|ref|ZP_20891019.1| peptide chain release factor 1 [Vibrio cholerae 4260B]
gi|443504526|ref|ZP_21071484.1| peptide chain release factor 1 [Vibrio cholerae HC-64A1]
gi|443508427|ref|ZP_21075189.1| peptide chain release factor 1 [Vibrio cholerae HC-65A1]
gi|443512271|ref|ZP_21078908.1| peptide chain release factor 1 [Vibrio cholerae HC-67A1]
gi|443515824|ref|ZP_21082335.1| peptide chain release factor 1 [Vibrio cholerae HC-68A1]
gi|443519617|ref|ZP_21086013.1| peptide chain release factor 1 [Vibrio cholerae HC-71A1]
gi|443524508|ref|ZP_21090721.1| peptide chain release factor 1 [Vibrio cholerae HC-72A2]
gi|443532104|ref|ZP_21098118.1| peptide chain release factor 1 [Vibrio cholerae HC-7A1]
gi|443535910|ref|ZP_21101783.1| peptide chain release factor 1 [Vibrio cholerae HC-80A1]
gi|443539446|ref|ZP_21105300.1| peptide chain release factor 1 [Vibrio cholerae HC-81A1]
gi|449055408|ref|ZP_21734076.1| Peptide chain release factor 1 [Vibrio cholerae O1 str. Inaba
G4222]
gi|20139356|sp|Q9KQ25.1|RF1_VIBCH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|172047628|sp|A5F696.1|RF1_VIBC3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790906|sp|C3LPI4.1|RF1_VIBCM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|9656733|gb|AAF95324.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124116034|gb|EAY34854.1| peptide chain release factor 1 [Vibrio cholerae 1587]
gi|124122826|gb|EAY41569.1| peptide chain release factor 1 [Vibrio cholerae MZO-3]
gi|126510644|gb|EAZ73238.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457]
gi|126518907|gb|EAZ76130.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|146316339|gb|ABQ20878.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|148875897|gb|EDL74032.1| peptide chain release factor 1 [Vibrio cholerae 623-39]
gi|149740734|gb|EDM54833.1| peptide chain release factor 1 [Vibrio cholerae MZO-2]
gi|150422740|gb|EDN14694.1| peptide chain release factor 1 [Vibrio cholerae AM-19226]
gi|227010192|gb|ACP06404.1| peptide chain release factor 1 [Vibrio cholerae M66-2]
gi|227014075|gb|ACP10285.1| peptide chain release factor 1 [Vibrio cholerae O395]
gi|229332588|gb|EEN98074.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)]
gi|229337756|gb|EEO02773.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426]
gi|229341055|gb|EEO06060.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80]
gi|229343846|gb|EEO08821.1| peptide chain release factor 1 [Vibrio cholerae RC9]
gi|229349006|gb|EEO13963.1| peptide chain release factor 1 [Vibrio cholerae TMA 21]
gi|229351986|gb|EEO16927.1| peptide chain release factor 1 [Vibrio cholerae B33]
gi|229355248|gb|EEO20169.1| peptide chain release factor 1 [Vibrio cholerae BX 330286]
gi|229369943|gb|ACQ60366.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236]
gi|254844963|gb|EET23377.1| peptide chain release factor 1 [Vibrio cholerae MO10]
gi|255736922|gb|EET92318.1| peptide chain release factor 1 [Vibrio cholera CIRS 101]
gi|262024100|gb|EEY42795.1| peptide chain release factor 1 [Vibrio cholerae RC27]
gi|327484701|gb|AEA79108.1| Peptide chain release factor 1 [Vibrio cholerae LMA3984-4]
gi|340036694|gb|EGQ97670.1| peptide chain release factor 1 [Vibrio cholerae HC-49A2]
gi|340037668|gb|EGQ98643.1| peptide chain release factor 1 [Vibrio cholerae HCUF01]
gi|340046901|gb|EGR07831.1| peptide chain release factor 1 [Vibrio cholerae HE48]
gi|341620915|gb|EGS46669.1| peptide chain release factor 1 [Vibrio cholerae HC-48A1]
gi|341621115|gb|EGS46867.1| peptide chain release factor 1 [Vibrio cholerae HC-70A1]
gi|341621667|gb|EGS47406.1| peptide chain release factor 1 [Vibrio cholerae HC-40A1]
gi|341637107|gb|EGS61799.1| peptide chain release factor 1 [Vibrio cholerae HFU-02]
gi|341644021|gb|EGS68271.1| peptide chain release factor 1 [Vibrio cholerae BJG-01]
gi|341646190|gb|EGS70308.1| peptide chain release factor 1 [Vibrio cholerae HC-38A1]
gi|356417211|gb|EHH70830.1| peptide chain release factor 1 [Vibrio cholerae HC-06A1]
gi|356418114|gb|EHH71721.1| peptide chain release factor 1 [Vibrio cholerae HC-21A1]
gi|356422569|gb|EHH76043.1| peptide chain release factor 1 [Vibrio cholerae HC-19A1]
gi|356428208|gb|EHH81437.1| peptide chain release factor 1 [Vibrio cholerae HC-22A1]
gi|356430441|gb|EHH83650.1| peptide chain release factor 1 [Vibrio cholerae HC-23A1]
gi|356433026|gb|EHH86221.1| peptide chain release factor 1 [Vibrio cholerae HC-28A1]
gi|356439583|gb|EHH92552.1| peptide chain release factor 1 [Vibrio cholerae HC-32A1]
gi|356444979|gb|EHH97788.1| peptide chain release factor 1 [Vibrio cholerae HC-43A1]
gi|356445396|gb|EHH98203.1| peptide chain release factor 1 [Vibrio cholerae HC-33A2]
gi|356450517|gb|EHI03237.1| peptide chain release factor 1 [Vibrio cholerae HC-48B2]
gi|356452733|gb|EHI05412.1| peptide chain release factor 1 [Vibrio cholerae HC-61A1]
gi|356647210|gb|AET27265.1| peptide chain release factor 1 [Vibrio cholerae O1 str.
2010EL-1786]
gi|378795500|gb|AFC58971.1| peptide chain release factor 1 [Vibrio cholerae IEC224]
gi|395916068|gb|EJH26898.1| peptide chain release factor 1 [Vibrio cholerae CP1032(5)]
gi|395917576|gb|EJH28404.1| peptide chain release factor 1 [Vibrio cholerae CP1041(14)]
gi|395918929|gb|EJH29753.1| peptide chain release factor 1 [Vibrio cholerae CP1038(11)]
gi|395927931|gb|EJH38694.1| peptide chain release factor 1 [Vibrio cholerae CP1042(15)]
gi|395928705|gb|EJH39458.1| peptide chain release factor 1 [Vibrio cholerae CP1046(19)]
gi|395931993|gb|EJH42737.1| peptide chain release factor 1 [Vibrio cholerae CP1048(21)]
gi|395939604|gb|EJH50286.1| peptide chain release factor 1 [Vibrio cholerae HC-20A2]
gi|395942781|gb|EJH53457.1| peptide chain release factor 1 [Vibrio cholerae HC-46A1]
gi|395952346|gb|EJH62960.1| peptide chain release factor 1 [Vibrio cholerae HE-25]
gi|395958559|gb|EJH69043.1| peptide chain release factor 1 [Vibrio cholerae HC-56A2]
gi|395958960|gb|EJH69412.1| peptide chain release factor 1 [Vibrio cholerae HC-57A2]
gi|395961700|gb|EJH72014.1| peptide chain release factor 1 [Vibrio cholerae HC-42A1]
gi|395970522|gb|EJH80277.1| peptide chain release factor 1 [Vibrio cholerae HC-47A1]
gi|395972694|gb|EJH82276.1| peptide chain release factor 1 [Vibrio cholerae CP1030(3)]
gi|395975523|gb|EJH85014.1| peptide chain release factor 1 [Vibrio cholerae CP1047(20)]
gi|408006824|gb|EKG44945.1| peptide chain release factor 1 [Vibrio cholerae HC-39A1]
gi|408012341|gb|EKG50125.1| peptide chain release factor 1 [Vibrio cholerae HC-41A1]
gi|408030245|gb|EKG66914.1| peptide chain release factor 1 [Vibrio cholerae CP1037(10)]
gi|408031513|gb|EKG68131.1| peptide chain release factor 1 [Vibrio cholerae CP1040(13)]
gi|408041271|gb|EKG77388.1| peptide chain release factor 1 [Vibrio Cholerae CP1044(17)]
gi|408042599|gb|EKG78644.1| peptide chain release factor 1 [Vibrio cholerae CP1050(23)]
gi|408052642|gb|EKG87672.1| peptide chain release factor 1 [Vibrio cholerae HC-81A2]
gi|408607929|gb|EKK81332.1| peptide chain release factor 1 [Vibrio cholerae CP1033(6)]
gi|408622959|gb|EKK95921.1| peptide chain release factor 1 [Vibrio cholerae HC-17A1]
gi|408633467|gb|EKL05811.1| peptide chain release factor 1 [Vibrio cholerae HC-50A2]
gi|408654475|gb|EKL25617.1| peptide chain release factor 1 [Vibrio cholerae HC-77A1]
gi|408655407|gb|EKL26532.1| peptide chain release factor 1 [Vibrio cholerae HC-62A1]
gi|408845555|gb|EKL85671.1| peptide chain release factor 1 [Vibrio cholerae HC-37A1]
gi|408845693|gb|EKL85808.1| peptide chain release factor 1 [Vibrio cholerae HC-17A2]
gi|408870231|gb|EKM09511.1| peptide chain release factor 1 [Vibrio cholerae HC-62B1]
gi|408879119|gb|EKM18112.1| peptide chain release factor 1 [Vibrio cholerae HC-69A1]
gi|429224896|gb|EKY31206.1| Peptide chain release factor 1 [Vibrio cholerae PS15]
gi|439974059|gb|ELP50255.1| peptide chain release factor 1 [Vibrio cholerae 4260B]
gi|443431471|gb|ELS74023.1| peptide chain release factor 1 [Vibrio cholerae HC-64A1]
gi|443435047|gb|ELS81192.1| peptide chain release factor 1 [Vibrio cholerae HC-65A1]
gi|443438873|gb|ELS88589.1| peptide chain release factor 1 [Vibrio cholerae HC-67A1]
gi|443443234|gb|ELS96536.1| peptide chain release factor 1 [Vibrio cholerae HC-68A1]
gi|443447035|gb|ELT03691.1| peptide chain release factor 1 [Vibrio cholerae HC-71A1]
gi|443449842|gb|ELT10133.1| peptide chain release factor 1 [Vibrio cholerae HC-72A2]
gi|443457494|gb|ELT24891.1| peptide chain release factor 1 [Vibrio cholerae HC-7A1]
gi|443460978|gb|ELT32056.1| peptide chain release factor 1 [Vibrio cholerae HC-80A1]
gi|443465546|gb|ELT40206.1| peptide chain release factor 1 [Vibrio cholerae HC-81A1]
gi|448264447|gb|EMB01684.1| Peptide chain release factor 1 [Vibrio cholerae O1 str. Inaba
G4222]
Length = 362
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|297582072|ref|ZP_06943991.1| peptide chain release factor 1 [Vibrio cholerae RC385]
gi|297533767|gb|EFH72609.1| peptide chain release factor 1 [Vibrio cholerae RC385]
Length = 362
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|295105440|emb|CBL02984.1| bacterial peptide chain release factor 1 (bRF-1) [Faecalibacterium
prausnitzii SL3/3]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 174/268 (64%), Gaps = 9/268 (3%)
Query: 68 RVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-- 123
R+ A+ RR L +NQP+A+ PA + K +R+ D+ ++ R Q +D L
Sbjct: 7 RMDAVCRRFEELSMRLNQPDAAADPALFRKL---MREYHDTEPVVEAYRDWQTALDHLAQ 63
Query: 124 -KSLIYE-CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K+L+ E S D D M +E+ + +L++ L LLPKD D ++ I+E+R+G
Sbjct: 64 AKALLEEPGSLDPDFKQMIQQEISEKSQDVAKLENNLKILLLPKDVNDGKNVIMEIRSGA 123
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GGEEA+LFA + +MY Y+Q +GW E++ + E++L G KEA ++ G G Y +LK+ES
Sbjct: 124 GGEEAALFAHSLLRMYTMYAQNRGWTLELLNLNETELGGVKEAIISVDGAGAYNRLKYES 183
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS +VA++PQA+EVD L +DLRIDT+RS G+GGQH N T
Sbjct: 184 GVHRVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKT 243
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SA+RVTHIPTG + Q+ERSQ KD
Sbjct: 244 SSAIRVTHIPTGTVVECQNERSQFQNKD 271
>gi|409399752|ref|ZP_11249997.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
gi|409131125|gb|EKN00843.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
Length = 353
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
E+ KA+KEL +L + LR +K+ ++L+ D DM ++A EL +
Sbjct: 31 EFVKASKELAELGPVEEQVLALREAEKQRREAEALLA----DPDMKELAEAELHTLKAQI 86
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ + +LLPKD+AD R ILE+R GG+EA LFA ++F Y++Y+ +GW+FEV+
Sbjct: 87 PELEMAVRLALLPKDEADARSGILEIRPAAGGDEAGLFAAELFSAYQKYAASQGWRFEVL 146
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E++L G K A A I+G V+ +LKFESG+HRVQRVP TE GR+HTS ++VA++P+A
Sbjct: 147 EYDENELGGVKGAMAEITGKSVFARLKFESGVHRVQRVPTTETQGRIHTSTITVAVMPEA 206
Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+EVDV + DLRID YR+ G+GGQH N T SAVR+THIPTG +++Q+ERSQH
Sbjct: 207 EEVDVDINEADLRIDVYRASGAGGQHVNKTESAVRITHIPTGTVVAMQEERSQH 260
>gi|116625721|ref|YP_827877.1| peptide chain release factor 1 [Candidatus Solibacter usitatus
Ellin6076]
gi|122252101|sp|Q01RX8.1|RF1_SOLUE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|116228883|gb|ABJ87592.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus
Solibacter usitatus Ellin6076]
Length = 362
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 174/249 (69%), Gaps = 10/249 (4%)
Query: 83 VNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI----DGL---KSLIYECSEDKD 135
+ Q A PA S A+ + RK+ + +S++ K +E DGL + ++ E +D +
Sbjct: 17 LTQQMADPAVISDAD-QYRKVAKAQSELSDIAAKYREWKKVEDGLAQARPMLQE--QDAE 73
Query: 136 MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFK 195
+ +MA E+ E+ R++ L LLPKD D+++ +LE+RAGTGG+EA+LFA ++F+
Sbjct: 74 LKEMAELEIAQLEPEKLRIEEELRVLLLPKDPNDDKNVVLEIRAGTGGDEATLFAAEIFR 133
Query: 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKS 255
MY RY++ + WK EV +ES + G KE A +SG VY KLK+ESG+HRVQRVP+TE+
Sbjct: 134 MYSRYAETQNWKMEVTSSSESSVGGLKEVIALVSGNKVYAKLKYESGVHRVQRVPVTEQQ 193
Query: 256 GRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
GRVHTSA++VA+LP+ADEV+V+L +D+RIDT+ S G GGQ NTT SAVR+TH+PTG+
Sbjct: 194 GRVHTSAITVAVLPEADEVEVKLEAKDIRIDTFCSSGPGGQSVNTTYSAVRITHLPTGLV 253
Query: 316 ISIQDERSQ 324
+S QDE+SQ
Sbjct: 254 VSCQDEKSQ 262
>gi|449127508|ref|ZP_21763781.1| peptide chain release factor 1 [Treponema denticola SP33]
gi|448944241|gb|EMB25122.1| peptide chain release factor 1 [Treponema denticola SP33]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++R+ + R +E V P A+Y + +E L M + +K+I+
Sbjct: 1 MKERLDNLRNRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI E S D ++ +MA EEL ++ ++ L L+P D +E++ I+E+R GTG
Sbjct: 61 SKLLIQEES-DAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+F+MY Y++ K WK+E++ + E++L GYKE + +ISG VYG L++ESG
Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEILSLNETELGGYKEITFSISGKYVYGSLRYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSAV+VA+LP+A+E ++ + EDLRID R+GG GGQ NTT+
Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ + QDE+SQ
Sbjct: 240 SAVRITHIPTGLVVICQDEKSQ 261
>gi|160945367|ref|ZP_02092593.1| hypothetical protein FAEPRAM212_02889 [Faecalibacterium prausnitzii
M21/2]
gi|158443098|gb|EDP20103.1| peptide chain release factor 1 [Faecalibacterium prausnitzii M21/2]
Length = 361
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 174/268 (64%), Gaps = 9/268 (3%)
Query: 68 RVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-- 123
R+ A+ RR L +NQP+A+ PA + K +R+ D+ ++ R Q +D L
Sbjct: 7 RMDAVCRRFEELSMRLNQPDAAADPALFRKL---MREYHDTEPVVEAYRDWQTALDHLAQ 63
Query: 124 -KSLIYE-CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K+L+ E S D D M +E+ + +L++ L LLPKD D ++ I+E+R+G
Sbjct: 64 AKALLEEPGSLDPDFKQMIQQEISEKSQDVAKLENNLKILLLPKDVNDGKNVIMEIRSGA 123
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GGEEA+LFA + +MY Y+Q +GW E++ + E++L G KEA ++ G G Y +LK+ES
Sbjct: 124 GGEEAALFAHSLLRMYTMYAQNRGWTLELLNLNETELGGVKEAIISVDGAGAYNRLKYES 183
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS +VA++PQA+EVD L +DLRIDT+RS G+GGQH N T
Sbjct: 184 GVHRVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKT 243
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SA+RVTHIPTG + Q+ERSQ KD
Sbjct: 244 SSAIRVTHIPTGTVVECQNERSQFQNKD 271
>gi|402702451|ref|ZP_10850430.1| peptide chain release factor 1 [Pseudomonas fragi A22]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 152/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A + L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKD--NDPDMREMAVEEVREAKERLLELEQDLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++FA D+F+MY RY++++GWK E++ + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFAGDLFRMYSRYAERRGWKLEILSENSGEHGGYKEVIARVEGENVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG+HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLR+DTYRS G+GG
Sbjct: 177 LKFESGVHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPSDLRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|402574907|ref|YP_006624250.1| peptide chain release factor 1 (bRF-1) [Desulfosporosinus meridiei
DSM 13257]
gi|402256104|gb|AFQ46379.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfosporosinus
meridiei DSM 13257]
Length = 356
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/262 (46%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IER+ L L++ PE ++ +E+ K K + + + + E + ++E+D
Sbjct: 1 MLEKLYEIERKYDELTELLSDPEIISNQSEWQKYAKAQAGMTNLVTVFREYQEVKRELDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
++L+ E D +M +MA +E + + + L+ + LLPKD DE++ I+E+RAG G
Sbjct: 61 TETLLRE-KLDPEMQEMAEQEKENLLLKSEELEEQIRILLLPKDPLDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EASLFA D+ +MY RY++ +GWK EV+ V+ SD GYKE I G G Y KLKFESG
Sbjct: 120 GDEASLFAGDLHRMYTRYAEGQGWKVEVLSVSYSDAGGYKEIIFLIEGHGAYSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE SGR+HTS +VA+LP+A+EV+V + DLRID Y S G GGQ NTT
Sbjct: 180 VHRVQRIPATESSGRIHTSTATVAVLPEAEEVEVSINPNDLRIDVYCSSGPGGQCVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVRVTHIPTG+ S QDE+SQ
Sbjct: 240 SAVRVTHIPTGIIASCQDEKSQ 261
>gi|331701218|ref|YP_004398177.1| peptide chain release factor 1 [Lactobacillus buchneri NRRL
B-30929]
gi|406026781|ref|YP_006725613.1| peptide chain release factor 1 [Lactobacillus buchneri CD034]
gi|329128561|gb|AEB73114.1| Peptide chain release factor 1 [Lactobacillus buchneri NRRL
B-30929]
gi|405125270|gb|AFS00031.1| bacterial peptide chain release factor 1 (bRF- 1) [Lactobacillus
buchneri CD034]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 170/253 (67%), Gaps = 3/253 (1%)
Query: 75 RSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
R L L++ PE A ++ K +KE LRD++ + + K++D K ++ E +
Sbjct: 14 RYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAFKKYQKVSKQLDDDKEMLREKID 73
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D D+ M +E+ DE+ +L+ + LLPKD D+++ I+E+ GG+E SLFA D
Sbjct: 74 D-DLEAMVKDEITSLTDEKDKLEDQMKVMLLPKDPNDDKNIIMEIHGAAGGDEGSLFAAD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F MY +Y++++GWK E++ E+++ G+KE I+G VY KLK+E+G HRVQRVP+T
Sbjct: 133 LFSMYSKYAERQGWKVEIIDKNETEVGGFKEIVLMITGDKVYSKLKYENGAHRVQRVPVT 192
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E +GRVHTS +V ++P+ ++VD+ + +D+R+D YRS G+GGQH N T+SAVR+TH+PT
Sbjct: 193 ESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMTHLPT 252
Query: 313 GMTISIQDERSQH 325
G+ +++QDERSQ
Sbjct: 253 GIVVAMQDERSQQ 265
>gi|398866181|ref|ZP_10621681.1| peptide chain release factor 1 [Pseudomonas sp. GM78]
gi|398241518|gb|EJN27168.1| peptide chain release factor 1 [Pseudomonas sp. GM78]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 162/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A +
Sbjct: 38 YSKEYAEVEPI---VEAYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKERLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEANLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLRIDTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRIDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|167031789|ref|YP_001667020.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
gi|189039985|sp|B0KNE4.1|RF1_PSEPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166858277|gb|ABY96684.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D D+ +MA EE+ A ++ L+S L + LLPKD D R+ LE
Sbjct: 59 QGDLEGAQALLKDS--DPDLREMAVEEVREAKEQLLTLESQLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GRVHTSA +VA+LP+ DE + + DLR+DTYR+ G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|336123568|ref|YP_004565616.1| peptide Chain Release factor [Vibrio anguillarum 775]
gi|335341291|gb|AEH32574.1| Bacterial Peptide Chain Release Factor [Vibrio anguillarum 775]
Length = 362
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 157/233 (67%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q+++ + + E ED +M +MA EE+ +A +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLVAAEEMTKE--EDAEMREMAQEEIKIAKATIERLTD 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY RY++K W+ E++ + +
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRYAEKMSWRIEIMSASYA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 157 EHGGYKEVIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|325578168|ref|ZP_08148303.1| peptide chain release factor RF1 [Haemophilus parainfluenzae ATCC
33392]
gi|325159904|gb|EGC72033.1| peptide chain release factor RF1 [Haemophilus parainfluenzae ATCC
33392]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L + + ++L + E + L+ + E K+M +M EE I+E E
Sbjct: 38 YSKEYSQLEDVVKCFNRWNQLNSNIAEAE----LMLDDPEMKEMAEMEIEESKAEIEEVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 94 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANESEQGGYKEVIVKVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 267
>gi|419802521|ref|ZP_14327707.1| peptide chain release factor 1 [Haemophilus parainfluenzae HK262]
gi|419844745|ref|ZP_14368032.1| peptide chain release factor 1 [Haemophilus parainfluenzae HK2019]
gi|385190081|gb|EIF37531.1| peptide chain release factor 1 [Haemophilus parainfluenzae HK262]
gi|386416671|gb|EIJ31163.1| peptide chain release factor 1 [Haemophilus parainfluenzae HK2019]
Length = 360
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L + + ++L + E + L+ + E K+M +M EE I+E E
Sbjct: 38 YSKEYSQLEDVVKCFNRWNQLNSNIAEAE----LMLDDPEMKEMAEMEIEESKAEIEEVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 94 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANESEQGGYKEVIVKVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 267
>gi|254226890|ref|ZP_04920458.1| peptide chain release factor 1 [Vibrio cholerae V51]
gi|125620572|gb|EAZ48938.1| peptide chain release factor 1 [Vibrio cholerae V51]
Length = 362
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA +E+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPDDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY R+++KKGW+ EV+ +E++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|409427036|ref|ZP_11261567.1| peptide chain release factor 1 [Pseudomonas sp. HYS]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 156/216 (72%), Gaps = 3/216 (1%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADE 170
++ R Q ++ G ++L+ + D D+ +MA EE+ A ++ L++ L + LLPKD D
Sbjct: 53 AQWRKVQDDLAGAQALLKDS--DPDLREMAVEEVREAKEQLAVLENQLQRMLLPKDPNDG 110
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
R+ LE+RAGTGG+EA++F+ D+F+MY RY++K+GW+ E++ E + GYKE A + G
Sbjct: 111 RNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEG 170
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYR 289
VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + + DLR+DTYR
Sbjct: 171 DSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYR 230
Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 231 ASGAGGQHINKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|237731780|ref|ZP_04562261.1| peptide chain release factor 1 [Citrobacter sp. 30_2]
gi|395229702|ref|ZP_10408013.1| peptide chain release factor 1 [Citrobacter sp. A1]
gi|421847446|ref|ZP_16280584.1| peptide chain release factor 1 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424729808|ref|ZP_18158408.1| glutamyl-trna reductase [Citrobacter sp. L17]
gi|226907319|gb|EEH93237.1| peptide chain release factor 1 [Citrobacter sp. 30_2]
gi|394716917|gb|EJF22647.1| peptide chain release factor 1 [Citrobacter sp. A1]
gi|411771242|gb|EKS54949.1| peptide chain release factor 1 [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422895763|gb|EKU35550.1| glutamyl-trna reductase [Citrobacter sp. L17]
gi|455645768|gb|EMF24811.1| peptide chain release factor 1 [Citrobacter freundii GTC 09479]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKCE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQHLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGFKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 DAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|409197131|ref|ZP_11225794.1| peptide chain release factor 1 [Marinilabilia salmonicolor JCM
21150]
Length = 355
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 174/262 (66%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ A+ R + ++ PE + Y K NKE R+L D +++ + + + I+
Sbjct: 1 MLEKIEALRLRFEEIGQMITDPEVISDQKRYVKLNKEYRELEDIVNVGKDYKNLLENIES 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
++++ E +D++M MA EEL +E +++ + LLP D D ++ ++E+RAG G
Sbjct: 61 SRAMLKE--DDEEMRAMAREELDGLEEERPKMEEEIKMLLLPGDPEDSKNAVMEIRAGAG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+F+MY +Y + KGWK EV +E GYKE +SG GVYG LK+ESG
Sbjct: 119 GDEASIFAGDLFRMYTKYCESKGWKTEVTHYSEGTSGGYKEVVMKVSGNGVYGILKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA SVA+LP+A+E D+ L+ ED+R DTY S G GGQ NTT
Sbjct: 179 VHRVQRVPQTETQGRVHTSAASVAVLPEAEEFDIDLKQEDIRKDTYCSSGPGGQSVNTTY 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SA+R+THIPTG+ ++ QD++SQ
Sbjct: 239 SAIRLTHIPTGIVVTCQDQKSQ 260
>gi|339327370|ref|YP_004687063.1| peptide chain release factor 1 [Cupriavidus necator N-1]
gi|338167527|gb|AEI78582.1| peptide chain release factor 1 [Cupriavidus necator N-1]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 165/239 (69%), Gaps = 5/239 (2%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M D A +E+ A
Sbjct: 34 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKDFAADEIASARARL 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 90 EALEASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAGDLLRMYTRYAERQRWQVEVM 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ESDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 150 SESESDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 209
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH KD
Sbjct: 210 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKD 268
>gi|157273346|gb|ABV27245.1| peptide chain release factor 1 [Candidatus Chloracidobacterium
thermophilum]
Length = 357
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 177/262 (67%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A+E + L ++ PE A A Y+K K+ +L + + E +T + +
Sbjct: 1 MFDKLKALEEKYEALTAQLSDPEVVADAARYAKLAKQHSELTEVVEKFREYQTIEANLAS 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ E +ED +M+ +A EE+ L + + Q L + L PKD D ++ +LE+RAGTG
Sbjct: 61 ARELLNE-AEDAEMVALAREEIALLEKQRAQCQLELEQLLTPKDPNDRKNVLLEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G EASLFA ++ +MY RY++++GW+ +++ + S++ G KE I G GVY +LK ESG
Sbjct: 120 GNEASLFAGELLRMYLRYAERRGWRVQILDESLSEVGGLKEGIVLIEGTGVYSRLKHESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP+TE +GR+HTS V+VA+LP+A+EVD+ + +D+RIDT+ S G GGQ NTT
Sbjct: 180 VHRVQRVPVTESAGRIHTSTVTVAVLPEAEEVDIEIDPKDVRIDTFCSSGPGGQSVNTTY 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+PTG+ +SIQDE+SQ
Sbjct: 240 SAVRLTHLPTGLVVSIQDEKSQ 261
>gi|345430012|ref|YP_004823132.1| peptide chain release factor RF-1 [Haemophilus parainfluenzae T3T1]
gi|301156075|emb|CBW15546.1| peptide chain release factor RF-1 [Haemophilus parainfluenzae T3T1]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI-DEE 151
YSK +L + + ++L + E + L+ + E K+M +M EE + I D E
Sbjct: 38 YSKEYSQLEDVVKCFNRWNQLNSNIAEAE----LMLDDPEMKEMAEMEIEESKVEIEDVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 94 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANESEQGGYKEVIVKVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 267
>gi|421720989|ref|ZP_16160266.1| peptide chain release factor 1 [Helicobacter pylori R055a]
gi|407225773|gb|EKE95543.1| peptide chain release factor 1 [Helicobacter pylori R055a]
Length = 352
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 168/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EAS+F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEASIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|357419584|ref|YP_004932576.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
gi|355397050|gb|AER66479.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
Length = 357
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 174/244 (71%), Gaps = 10/244 (4%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISEL----RTKQKEIDGL---KSLIYECSEDKDMLDMA 140
A P +Y KEL+KL + E+ R ++ +D + +SL++ + DK++ +MA
Sbjct: 22 ADP-QYISDPKELQKLAKKHATLEEIVQTYRQYKEVVDRISEARSLLH--ASDKELAEMA 78
Query: 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERY 200
EEL EE+RL L LLPKD D++ I+E+RAG GG+EA+LFA D+++MY R+
Sbjct: 79 QEELRELEPEEERLTERLKVLLLPKDPNDDKSVIMEIRAGAGGDEAALFAGDLYRMYTRF 138
Query: 201 SQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHT 260
+++KGW E++ + E+ + GYKE I GVG Y +LK+ESG+HRVQRVP+TE SGR+HT
Sbjct: 139 AERKGWNTEIMTMHETGIGGYKEVVFRIDGVGAYSQLKYESGVHRVQRVPVTESSGRIHT 198
Query: 261 SAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQD 320
S +VA+LP+A++VDV +R EDL+IDTYR+ G+GGQH N T+SAVR+TH+PTG+ ++ QD
Sbjct: 199 STATVAVLPEAEDVDVEIREEDLKIDTYRASGAGGQHVNMTDSAVRITHLPTGIVVTCQD 258
Query: 321 ERSQ 324
ERSQ
Sbjct: 259 ERSQ 262
>gi|418019208|ref|ZP_12658729.1| peptide chain release factor 1 [Candidatus Regiella insecticola
R5.15]
gi|347605454|gb|EGY29899.1| peptide chain release factor 1 [Candidatus Regiella insecticola
R5.15]
Length = 293
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 145/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M ++A +EL A + L+ L LLP+D DERDC LE+RAGTGG+EA++FA
Sbjct: 3 DDLEMRELAQDELKEAKIRSEALEQKLQVLLLPQDPDDERDCFLEIRAGTGGDEAAIFAG 62
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ + WK EV+ + E + GYKE I+G GVYG+LKFESG HRVQRVP
Sbjct: 63 DMFRMYSRYAETRRWKMEVMNINEGEQGGYKEVITKITGNGVYGQLKFESGGHRVQRVPK 122
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P E +V + + DLRIDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 123 TESQGRIHTSACTVAVMPVLPETEVLEISDSDLRIDTFRSSGAGGQHVNTTDSAIRITHL 182
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 183 PTGIVVECQDERSQHKNK 200
>gi|261340150|ref|ZP_05968008.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC
35316]
gi|288317665|gb|EFC56603.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC
35316]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 161/237 (67%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ R Q +I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCYTDWRQVQDDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEILS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|296313476|ref|ZP_06863417.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768]
gi|296839995|gb|EFH23933.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768]
Length = 358
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|316932075|ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
gi|315599789|gb|ADU42324.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 162/235 (68%), Gaps = 2/235 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDE 150
+Y + +EL +L + + R + E+ + L+ + + + +M MA E L
Sbjct: 31 DYVRITRELSELNPLVEAVKSYRQVRDELGEIDELLEDPATEPEMRAMAEAERDALDAHR 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW EV
Sbjct: 91 DELIQQIRI-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGWSVEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +E + G+KE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 ISASEGTVGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++VDV ++ EDLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 210 VEDVDVDIKQEDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
>gi|162147699|ref|YP_001602160.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542323|ref|YP_002274552.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|189039975|sp|A9HJ50.1|RF1_GLUDA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161786276|emb|CAP55858.1| putative peptide chain release factor 1 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530000|gb|ACI49937.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 352
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 175/258 (67%), Gaps = 20/258 (7%)
Query: 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
E ++A E LV + ++KA++E +L + I ELR ++E ++L+
Sbjct: 16 ELQAALAEGLVGEA------FAKASREYAELEPIVDRIGELRLAEQEERQSQALLA---- 65
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLK-----SLLPKDDADERDCILEVRAGTGGEEAS 187
D +M ++A EL E+ R + +L+ ++LP+D+ADER ILE+R GG+EA+
Sbjct: 66 DPEMRELAEAEL-----EDLRARIPVLRQDIRIAMLPRDEADERSAILEIRPAAGGDEAA 120
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
LFA ++F Y RY+ +GW+FE++ ES+L G +E A I+G GV+ +LK+ESG+HRVQ
Sbjct: 121 LFAAELFDAYRRYAALRGWRFEIMEFDESELGGLREGIANITGRGVFARLKYESGVHRVQ 180
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
RVP TE GR+HTS V+VA+LP+A +VDV++ + DLRID YR+ G+GGQH N T SAVR+
Sbjct: 181 RVPATESQGRIHTSTVTVAVLPEAGDVDVQINDGDLRIDVYRASGAGGQHVNKTESAVRI 240
Query: 308 THIPTGMTISIQDERSQH 325
TH+PTG+ +++Q+E+SQH
Sbjct: 241 THLPTGLVVAMQEEKSQH 258
>gi|349700134|ref|ZP_08901763.1| peptide chain release factor 1 [Gluconacetobacter europaeus LMG
18494]
Length = 353
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 167/238 (70%), Gaps = 6/238 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
S A++S+A++E +L + ++ LRT +Q E D + L D ++ ++A EL
Sbjct: 27 SGADFSQASREYAELEPIVTRVNALRTAEQAEQDATQMLA-----DPELRELAQAELDTL 81
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L+ + ++LP+D+ADER ILE+R GG+EA LFA ++F Y+RY+ ++GW+
Sbjct: 82 HTQIPELRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGLFAAELFGAYQRYADQRGWR 141
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ +S+L G +E A+I+G GV+ +LK+ESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 142 FEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQRVPATESQGRIHTSTVTVAV 201
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+A+EVDV + DLRID YR+ G+GGQH N T SAVR+TH+PT + +++Q+E+SQH
Sbjct: 202 LPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVAMQEEKSQH 259
>gi|188580162|ref|YP_001923607.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
gi|226739114|sp|B1Z914.1|RF1_METPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|179343660|gb|ACB79072.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
Length = 361
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 159/229 (69%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G+++LI E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIRHYRAAEANLAGIRALIDEPGGDPEMRALAAEEKPEAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY +Y++ KGW+ EV+ +E
Sbjct: 97 ALQLMLLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TVGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ DL+IDT R+ G+GGQH N T SA+R+TH+PTG+ + +Q+ERSQH
Sbjct: 217 AINEADLKIDTMRAQGAGGQHVNKTESAIRITHMPTGVVVFVQEERSQH 265
>gi|395650290|ref|ZP_10438140.1| peptide chain release factor 1 [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKEKLAELEGDLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|295100871|emb|CBK98416.1| bacterial peptide chain release factor 1 (bRF-1) [Faecalibacterium
prausnitzii L2-6]
Length = 361
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 168/263 (63%), Gaps = 5/263 (1%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ RR L +NQPE A PA+ + +E + + + L T Q + K+L+
Sbjct: 10 AVCRRFEELSIRLNQPETAADPAQLRRLMQEYHEAQPVVDAYHALTTAQDHLAQAKALL- 68
Query: 129 ECSE--DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
E E D D M +EL + L++ L LLPKD DE+ I+E+RAG GGEEA
Sbjct: 69 EGDEPLDADFKAMVQQELSEKSQDVAELENNLKILLLPKDANDEKSVIMEIRAGAGGEEA 128
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
+LFA + +MY Y Q +GW+ E++ + E++L G KEA A++G G Y +LK+ESG+HRV
Sbjct: 129 ALFAHSLVRMYTMYVQSRGWEMELLNLNETELGGTKEAVFAVNGRGAYNRLKYESGVHRV 188
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA++PQA+EVD L +DLRIDT+RS G+GGQH N T+SA+R
Sbjct: 189 QRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKTSSAIR 248
Query: 307 VTHIPTGMTISIQDERSQHMVKD 329
VTHIPTG + Q+ERSQ KD
Sbjct: 249 VTHIPTGTVVECQNERSQFQNKD 271
>gi|193222210|emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas
arsenicoxydans]
Length = 361
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 144/199 (72%), Gaps = 1/199 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM + A EE+ A ++L+ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 72 DPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGD 131
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R++++ W+ E+V + S++ GYKE I G G Y KLKFESG HRVQRVP T
Sbjct: 132 LLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRVQRVPAT 191
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+THIP
Sbjct: 192 ETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHIP 251
Query: 312 TGMTISIQDERSQHMVKDS 330
TG+ + QD+RSQH K S
Sbjct: 252 TGIVVECQDDRSQHKNKAS 270
>gi|408483921|ref|ZP_11190140.1| peptide chain release factor 1 [Pseudomonas sp. R81]
Length = 360
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKEKLAALEGDLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLRIDTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|377831957|ref|ZP_09814921.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
gi|377553964|gb|EHT15679.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
Length = 362
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 175/260 (67%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+ R L L++ PE A A + K +KE LR+++ +E + + I +
Sbjct: 9 KLQAVADRYDELNELISDPEVIADTARFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDEE 68
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ E +D D+ M +E+ + + + L+ L L+PKD D+++ I+E+R GG+E
Sbjct: 69 MLREI-DDPDLTAMTKDEIASSKERQATLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDE 127
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
ASLFA D++ MY RY++K+GWK EVV E+++ G+KE S I+G VY KLKFE+G HR
Sbjct: 128 ASLFAADLYDMYLRYAEKQGWKVEVVDKNETEVGGFKEISLLITGDKVYSKLKFENGAHR 187
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP+TE +GRVHTS +V ++P+A++V++ + +D+R D YRS G+GGQH N T+SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVEIDIDPKDIRTDVYRSSGAGGQHINKTSSAV 247
Query: 306 RVTHIPTGMTISIQDERSQH 325
R+TH+PTG+ +++QDERSQ
Sbjct: 248 RMTHLPTGIVVAMQDERSQQ 267
>gi|376295460|ref|YP_005166690.1| peptide chain release factor 1 [Desulfovibrio desulfuricans ND132]
gi|323458021|gb|EGB13886.1| peptide chain release factor 1 [Desulfovibrio desulfuricans ND132]
Length = 355
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 166/259 (64%), Gaps = 4/259 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
IE + LE + +P+ Y K +K L + + + +E+D + ++ +
Sbjct: 8 IEEKYVLLEQELAEPDIFNDQERYKKVSKAHADLSEVVEAFRRYKQLSQELDDNREMLND 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D ++ +MA E+ E ++ L LLPKD DE++ ILE+RAGTGG+EA+LF
Sbjct: 68 A--DPEIREMAKAEIDDLEGELPEIEEQLKVLLLPKDPMDEKNIILEIRAGTGGDEAALF 125
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++ WK E + + GYKE A+ISG VY KLK+ESG HRVQRV
Sbjct: 126 AADLYRMYTRYAEINHWKVEEMSANHTGSGGYKEVIASISGDKVYSKLKYESGTHRVQRV 185
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VAI+P+A+EVD+ LR EDLR+D +RS G GGQ NTT+SA+RVTH
Sbjct: 186 PATESQGRIHTSAVTVAIMPEAEEVDIDLRPEDLRVDVFRSSGPGGQSVNTTDSAIRVTH 245
Query: 310 IPTGMTISIQDERSQHMVK 328
IP+GM + QDE+SQH K
Sbjct: 246 IPSGMIVICQDEKSQHKNK 264
>gi|39933683|ref|NP_945959.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192289040|ref|YP_001989645.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
gi|61214634|sp|Q6NC66.1|RF1_RHOPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229470355|sp|B3QCF6.1|RF1_RHOPT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|39647529|emb|CAE26050.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192282789|gb|ACE99169.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
Length = 361
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 162/235 (68%), Gaps = 2/235 (0%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA-TEELCLAIDE 150
+Y + +EL +L + + R + E+ + L+ + + + +M MA E L
Sbjct: 31 DYVRITRELSELNPLVEAVKSYRQVRDELGEIDELLEDPATEPEMRAMAEAERDALDAHR 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
++ +Q + + +LLPKD DER+ +LE+RAGTGG+EASLFA D+F+MYE+++ +GW EV
Sbjct: 91 DELIQQIRI-ALLPKDAMDERNVMLEIRAGTGGDEASLFAGDLFRMYEKFAALQGWSVEV 149
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ +E + GYKE A + G G + KLKFESG+HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 150 ISASEGTVGGYKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATVAVLPE 209
Query: 271 ADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
++VDV ++ +DLRI+T R+ G+GGQH N T SA+R+TH+PTG+ + +QD RSQH
Sbjct: 210 VEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAIRITHLPTGIVVMMQDSRSQH 264
>gi|398842534|ref|ZP_10599713.1| peptide chain release factor 1 [Pseudomonas sp. GM102]
gi|398105631|gb|EJL95718.1| peptide chain release factor 1 [Pseudomonas sp. GM102]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPI---VGTYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKEQLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 EIEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|389845176|ref|YP_006347256.1| peptide chain release factor 1 [Mesotoga prima MesG1.Ag.4.2]
gi|387859922|gb|AFK08013.1| peptide chain release factor 1 [Mesotoga prima MesG1.Ag.4.2]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/278 (45%), Positives = 171/278 (61%), Gaps = 23/278 (8%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEASP-----AEYSKANKELRKLRDSMHLISELR 114
DL KIME R +E +++PE + EY K + EL SE+
Sbjct: 2 DLGKIME----VFRERFKEVEKELSKPEVASDPDKLMEYGKKHAEL----------SEII 47
Query: 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAI--DEEKRL--QSLLLKSLLPKDDADE 170
EID +K + E E K + +E+ D E R+ + L LK LL D ADE
Sbjct: 48 NLYSEIDSMKGELEEWHEMKATAEENEQEVIANTISDLENRIARKELNLKGLLVPDLADE 107
Query: 171 RDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISG 230
R+ I+E+RAGTGGEEA+LFA D+F+MY RY+++ WK E++ E+D+ G+KE I G
Sbjct: 108 RNIIIEIRAGTGGEEAALFAADLFRMYTRYAERNNWKSEIIDSNETDIGGFKEVIFQIRG 167
Query: 231 VGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS 290
V+ KLK+ESG+HRVQRVP TE GR+HTS +VA+LP+ E +V++ DLRIDTYRS
Sbjct: 168 RSVFSKLKYESGVHRVQRVPTTESGGRIHTSTATVAVLPEVSETEVKIDPADLRIDTYRS 227
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
G+GGQH N T+SAVR+ H PTG+ +++Q ERSQH K
Sbjct: 228 SGAGGQHVNKTDSAVRIVHEPTGIVVAVQKERSQHQNK 265
>gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans]
Length = 356
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 144/199 (72%), Gaps = 1/199 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM + A EE+ A ++L+ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 67 DPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGD 126
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R++++ W+ E+V + S++ GYKE I G G Y KLKFESG HRVQRVP T
Sbjct: 127 LLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRVQRVPAT 186
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+THIP
Sbjct: 187 ETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHIP 246
Query: 312 TGMTISIQDERSQHMVKDS 330
TG+ + QD+RSQH K S
Sbjct: 247 TGIVVECQDDRSQHKNKAS 265
>gi|148826783|ref|YP_001291536.1| peptide chain release factor 1 [Haemophilus influenzae PittGG]
gi|148718025|gb|ABQ99152.1| peptide chain release factor 1 [Haemophilus influenzae PittGG]
Length = 361
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|335049819|ref|ZP_08542803.1| peptide chain release factor 1 [Megasphaera sp. UPII 199-6]
gi|333762096|gb|EGL39608.1| peptide chain release factor 1 [Megasphaera sp. UPII 199-6]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 172/260 (66%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+V A+E + LE ++ P A E+ K KE L + + + K I G +
Sbjct: 5 KVQAVENKYNDLEQRISDPAVIARQKEWQKLTKEHASLAPIIEAYRKYQEVCKTIRGDRE 64
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ + S D ++ MA EE+ ++ L+ L +LPKD D+++ I+E+R G GG+E
Sbjct: 65 LLDDPSTDTELTAMAKEEIAELTKKQAALEEKLHILMLPKDPHDDKNVIMEIRGGAGGDE 124
Query: 186 ASLFAVDVFKMYERYSQKK-GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
A+LFA D+F+MY +Y +K+ GWK E++ E +L GYKE ++ G GVYGKLK+ESG+H
Sbjct: 125 AALFAGDLFRMYMKYIEKQPGWKAELISANEPELGGYKEVVFSVEGAGVYGKLKYESGVH 184
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE GR+HTS +VA+LP+AD+V++ L +D+R+D +R+ G+GGQH N T+SA
Sbjct: 185 RVQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRVDYFRASGAGGQHINKTSSA 244
Query: 305 VRVTHIPTGMTISIQDERSQ 324
VR+TH+P+G+ + QDERSQ
Sbjct: 245 VRMTHMPSGIVVECQDERSQ 264
>gi|386749203|ref|YP_006222410.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
gi|384555446|gb|AFI03780.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
Length = 352
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/201 (52%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L+S + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEVKKGELESTIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DLRI+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
HIPT +++S+QDE+SQH KD
Sbjct: 246 HIPTNISVSMQDEKSQHKNKD 266
>gi|119383645|ref|YP_914701.1| peptide chain release factor 1 [Paracoccus denitrificans PD1222]
gi|166223583|sp|A1B0G1.1|RF1_PARDP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119373412|gb|ABL69005.1| bacterial peptide chain release factor 1 (bRF-1) [Paracoccus
denitrificans PD1222]
Length = 351
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 177/262 (67%), Gaps = 10/262 (3%)
Query: 66 EQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
E R++ I R LE +N A PA E + ++E +L+ + I++ R+ Q++I
Sbjct: 4 EDRLIQIVERFEYLEARLN---AGPAAEEIAAISREYAELKPVVAQIAQWRSVQEDIRQA 60
Query: 124 KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183
++++ D +M ++A +EL L+ L +LLP+D AD R ILE+R GTGG
Sbjct: 61 QAMLA----DHEMRELAQDELSRLRAGLPALEHALRVALLPRDAADARPAILEIRPGTGG 116
Query: 184 EEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGI 243
EEA+LFA D+ MY R+++ +GW+F+++ + SDL G +EA A I G GV+ +LK+ESG+
Sbjct: 117 EEAALFAGDLLDMYRRFAESQGWQFQMLELVRSDLGGVREAMARIEGEGVFARLKYESGV 176
Query: 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303
HRVQRVP TE GR+HTSA +VA+LP+A+EVDV + D+RIDT R+ G+GGQH NTT+S
Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEEVDVDIPAADIRIDTMRASGAGGQHVNTTDS 236
Query: 304 AVRVTHIPTGMTISIQDERSQH 325
AVR+TH+PTG+ ++ E+SQH
Sbjct: 237 AVRITHLPTGIVVT-SSEKSQH 257
>gi|297183483|gb|ADI19614.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF0770_37D02]
Length = 358
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 148/208 (71%)
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
KE L+ +I E DK+M+ +A EL ++ + L LLPKD+AD ++ ILE+
Sbjct: 56 KEKKELEKIIDEKDGDKEMIKLAENELIQLSKKKSEYEQKLKIYLLPKDEADAKNAILEI 115
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG EA+LF D++KMYE+ KK W E++ +++S+ G+KE I G +Y L
Sbjct: 116 RAGTGGLEATLFVADLYKMYEKVCLKKKWLLEIINISKSEAGGFKEVILLIKGNNIYSFL 175
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTSA +VA+LP+A+EVD+++ +DLRID +RS G GGQ
Sbjct: 176 KFESGVHRVQRVPKTETQGRVHTSAATVAVLPEAEEVDIKINEKDLRIDVFRSSGPGGQS 235
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+P+G+ +S QDE+SQH
Sbjct: 236 VNTTDSAVRITHLPSGVVVSQQDEKSQH 263
>gi|269798159|ref|YP_003312059.1| peptide chain release factor 1 [Veillonella parvula DSM 2008]
gi|416999011|ref|ZP_11939680.1| peptide chain release factor 1 [Veillonella parvula
ACS-068-V-Sch12]
gi|269094788|gb|ACZ24779.1| peptide chain release factor 1 [Veillonella parvula DSM 2008]
gi|333977164|gb|EGL78023.1| peptide chain release factor 1 [Veillonella parvula
ACS-068-V-Sch12]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 177/267 (66%), Gaps = 9/267 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 SGIDEAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQVLLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + +DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
N T SAVR+TH+P+G+ ++ QD+RSQ
Sbjct: 237 INKTESAVRITHLPSGIVVACQDQRSQ 263
>gi|261399946|ref|ZP_05986071.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970]
gi|269210396|gb|EEZ76851.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970]
Length = 358
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|423689826|ref|ZP_17664346.1| peptide chain release factor 1 [Pseudomonas fluorescens SS101]
gi|388002153|gb|EIK63482.1| peptide chain release factor 1 [Pseudomonas fluorescens SS101]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLPKD D R+ LE
Sbjct: 59 QADLEGAQALLKDS--DPDMREMAVEEVREAKEKLAELEGDLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|385328956|ref|YP_005883259.1| peptide chain release factor I [Neisseria meningitidis alpha710]
gi|385341451|ref|YP_005895322.1| peptide chain release factor 1 [Neisseria meningitidis M01-240149]
gi|385857719|ref|YP_005904231.1| peptide chain release factor 1 [Neisseria meningitidis NZ-05/33]
gi|416168783|ref|ZP_11608050.1| peptide chain release factor 1 [Neisseria meningitidis OX99.30304]
gi|416186839|ref|ZP_11613946.1| peptide chain release factor 1 [Neisseria meningitidis M0579]
gi|308389808|gb|ADO32128.1| peptide chain release factor I [Neisseria meningitidis alpha710]
gi|325130724|gb|EGC53462.1| peptide chain release factor 1 [Neisseria meningitidis OX99.30304]
gi|325136665|gb|EGC59265.1| peptide chain release factor 1 [Neisseria meningitidis M0579]
gi|325201657|gb|ADY97111.1| peptide chain release factor 1 [Neisseria meningitidis M01-240149]
gi|325208608|gb|ADZ04060.1| peptide chain release factor 1 [Neisseria meningitidis NZ-05/33]
Length = 358
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|342218161|ref|ZP_08710786.1| peptide chain release factor 1 [Megasphaera sp. UPII 135-E]
gi|341590869|gb|EGS34095.1| peptide chain release factor 1 [Megasphaera sp. UPII 135-E]
Length = 360
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 173/260 (66%), Gaps = 3/260 (1%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+V A+E + LE ++ P A+ E+ K KE L D + + + + G +
Sbjct: 5 KVQAVENKFMDLEQRISDPAVIANQVEWQKLTKEHASLVDIVDTFRAYKEVRNAVKGDQE 64
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
++ + D+++L +A EE+ ++ L+ L +LPKD D+++ I+E+R G GG+E
Sbjct: 65 ILDDPDSDEELLCIAKEEISTLEKKQAALEEKLHILMLPKDPYDDKNVIMEIRGGAGGDE 124
Query: 186 ASLFAVDVFKMYERYSQKK-GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
A+LFA D+F+MY ++ +K+ GWK ++ E +L GYKE ++ G GVYGKLK+ESG+H
Sbjct: 125 AALFAGDLFRMYMKFIEKQSGWKASLISANEPELGGYKEVIFSVEGSGVYGKLKYESGVH 184
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE GR+HTS +VA+LP+AD+V++ L +D+RID +R+ G+GGQH N T+SA
Sbjct: 185 RVQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRIDYFRASGAGGQHVNKTSSA 244
Query: 305 VRVTHIPTGMTISIQDERSQ 324
VR+THIPTG+ + QDERSQ
Sbjct: 245 VRMTHIPTGIVVECQDERSQ 264
>gi|242371609|ref|ZP_04817183.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
gi|242350676|gb|EES42277.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
Length = 358
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 175/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + K +KE L+ ++ + ++K++E++ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRSYKSKKEELEDIEEMLRE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA++F
Sbjct: 68 TS-DKEEVEMLKEESTALKNELPDMEEELKILLIPKDPNDEKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ ++ E+SQ
Sbjct: 247 LPTGV-VATSSEKSQ 260
>gi|399925829|ref|ZP_10783187.1| peptide chain release factor 1 [Myroides injenensis M09-0166]
Length = 357
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 170/267 (63%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ I++R + +L+ QP+ A Y + NKE + L+ + +E T + ID
Sbjct: 1 MLDRLQIIKQRFDEVSDLIIQPDVIADQKRYVQLNKEYKDLKQLVEKRAEYITLKGNIDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+I + S D +M++MA +L A D L+ + L+PKD D ++ ++EVRAGTG
Sbjct: 61 ANEIIADGS-DAEMVEMAKMQLDEAKDRLPELEEEIKFLLIPKDPEDAKNVMVEVRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EAS+FA D+++MY +Y + +GW+ VV V E GYKE +SG VYG LKFE+G
Sbjct: 120 GDEASIFAGDLYRMYTKYCESRGWRTSVVDVNEGTAGGYKEVVFEVSGEDVYGTLKFEAG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE GRVHTSA +V +LP+A+E DV + D+RID + S G GGQ NTT
Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVHIDMNDVRIDLFCSSGPGGQSVNTTK 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+THIPTG+ QDE+SQH KD
Sbjct: 240 SAVRMTHIPTGLVAQCQDEKSQHKNKD 266
>gi|145634872|ref|ZP_01790579.1| peptide chain release factor 1 [Haemophilus influenzae PittAA]
gi|145267738|gb|EDK07735.1| peptide chain release factor 1 [Haemophilus influenzae PittAA]
Length = 361
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|398904470|ref|ZP_10652313.1| peptide chain release factor 1 [Pseudomonas sp. GM50]
gi|398175849|gb|EJM63589.1| peptide chain release factor 1 [Pseudomonas sp. GM50]
Length = 360
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPI---VGTYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKEQLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 EIEARLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|282850388|ref|ZP_06259767.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745]
gi|294792026|ref|ZP_06757174.1| peptide chain release factor 1 [Veillonella sp. 6_1_27]
gi|294793891|ref|ZP_06759028.1| peptide chain release factor 1 [Veillonella sp. 3_1_44]
gi|282579881|gb|EFB85285.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745]
gi|294455461|gb|EFG23833.1| peptide chain release factor 1 [Veillonella sp. 3_1_44]
gi|294457256|gb|EFG25618.1| peptide chain release factor 1 [Veillonella sp. 6_1_27]
Length = 360
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 177/267 (66%), Gaps = 9/267 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 SGIDEAMEVIEDKSMDEEFREMAQEELKDLKPQKEELEEKLQVLLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + +DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
N T SAVR+TH+P+G+ ++ QD+RSQ
Sbjct: 237 INKTESAVRITHLPSGIVVACQDQRSQ 263
>gi|217969845|ref|YP_002355079.1| peptide chain release factor 1 [Thauera sp. MZ1T]
gi|217507172|gb|ACK54183.1| peptide chain release factor 1 [Thauera sp. MZ1T]
Length = 360
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 165/236 (69%), Gaps = 14/236 (5%)
Query: 107 MHLISELRTKQKEIDGLKSLIYE-------CSEDKDML-DMATEELC-LAIDE-EKRLQS 156
M+ EL ++ EI+ + +L E C+ +++L D EL L + E E R+++
Sbjct: 32 MNAFRELSRERAEIEPVVALYREHRLAEADCATARELLADPEMRELGELELAEGEARIEA 91
Query: 157 L---LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L L ++LLP+D D R+ LE+RAGTGG+EA+LFA D+ +MY RY++++ WK E+V
Sbjct: 92 LEAELQRALLPRDPNDARNLFLEIRAGTGGDEAALFAGDLLRMYTRYAERQRWKVEIVSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+ESDL GYKE A + G G Y KLKFESG HRVQRVP+TE GR+HTSA +VA+LP+ADE
Sbjct: 152 SESDLGGYKEVIARVVGNGAYSKLKFESGGHRVQRVPVTETQGRIHTSACTVAVLPEADE 211
Query: 274 VD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
V+ V + DLRIDT+R+ G+GGQH N T+SAVR+THIPTG+ + QD+RSQH K
Sbjct: 212 VEAVDINPADLRIDTFRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHRNK 267
>gi|374583762|ref|ZP_09656856.1| peptide chain release factor 1 [Desulfosporosinus youngiae DSM
17734]
gi|374419844|gb|EHQ92279.1| peptide chain release factor 1 [Desulfosporosinus youngiae DSM
17734]
Length = 356
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 172/262 (65%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ +ER+ L L++ PE A +E+ K K + + + E + +E++
Sbjct: 1 MLEKLYEVERKYDELTELLSDPEIIAKQSEWQKYAKAQAGMTNLVTTFREYQGVLRELEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+SL+ E D D+ +MA +E + + + L++ + LLPKD DE++ I+E+RAG G
Sbjct: 61 TESLLKE-KLDSDLQEMAEQEREALLKQSQELEAQIQVLLLPKDPLDEKNVIMEIRAGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA LFA D++KMY RY++ +GWK E++ + SD+ GYKE + G G Y KLKFESG
Sbjct: 120 GDEAGLFAGDLYKMYTRYAEGQGWKVELLSASYSDIGGYKEIIFLLEGHGAYSKLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+A+EV+V + DLRID Y S G GGQ NTT
Sbjct: 180 VHRVQRIPATESGGRIHTSTATVAVLPEAEEVEVTINPNDLRIDIYCSSGPGGQCVNTTQ 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+TH+PTG+ S QDE+SQ
Sbjct: 240 SAVRITHLPTGIIASCQDEKSQ 261
>gi|296101959|ref|YP_003612105.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392979476|ref|YP_006478064.1| peptide chain release factor 1 [Enterobacter cloacae subsp.
dissolvens SDM]
gi|295056418|gb|ADF61156.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|392325409|gb|AFM60362.1| peptide chain release factor 1 [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA EEL A +
Sbjct: 35 FRALSREYAQLSDVSKCFTDWQQVQEDIETAQMML----DDPEMREMAQEELQDAKARSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 EMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|407786207|ref|ZP_11133353.1| peptide chain release factor 1 [Celeribacter baekdonensis B30]
gi|407201939|gb|EKE71935.1| peptide chain release factor 1 [Celeribacter baekdonensis B30]
Length = 349
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 155/221 (70%), Gaps = 7/221 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+L+ +I +SL+ + SE D DM +A EE+ + + L +LLP
Sbjct: 36 SDLKPVVDQIHAYQSLLSDLSEAEEMLLDPDMRALALEEIPVLKARLPLAEEALQIALLP 95
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD AD I+E+R GTGG+EA+LFA D+ +MY+RY++ +GW+FE++ + ES+L G KE
Sbjct: 96 KDSADTGSAIVEIRPGTGGDEAALFAGDLLRMYQRYAEARGWRFEIIELQESELGGVKEV 155
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I+G GV+ ++KFESG+HRVQRVP TE GRVHTSA +VA+LP+A +VD+ + D+R
Sbjct: 156 IANIAGQGVFARMKFESGVHRVQRVPTTESGGRVHTSAATVAVLPEAQDVDIEINANDIR 215
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
IDT RS G+GGQH NTT+SAVR+THIPTG+ ++ E+SQH
Sbjct: 216 IDTMRSSGAGGQHVNTTDSAVRITHIPTGIVVT-SSEKSQH 255
>gi|392412307|ref|YP_006448914.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfomonile
tiedjei DSM 6799]
gi|390625443|gb|AFM26650.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfomonile
tiedjei DSM 6799]
Length = 359
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 171/259 (66%), Gaps = 3/259 (1%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
I RR L +++P+ + PA+ K KE L D + L +EID L+++I
Sbjct: 10 INRRYEELNEELSRPDVISDPAKLKKVAKEQSDLADIVKAYHTLSDILREIDDLEAIIA- 68
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D ++++MA E+L + E ++ + LLPKD D+++ LE+RAGTGGEEA+LF
Sbjct: 69 AGDDPELVEMAREDLPQIKERESDVRQAINILLLPKDPNDDKNTFLEIRAGTGGEEAALF 128
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+F+ Y RY++ + W+ E++ + + G KE A I G G Y +LKFE G+HRVQRV
Sbjct: 129 AGDLFRAYCRYAEVRNWRVELMSSSPAAAGGIKEVIALIHGSGAYSRLKFERGVHRVQRV 188
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTSAV+VA+LP+AD+V++ + +DL+ID YRS G GGQ NTT+SAVRVTH
Sbjct: 189 PTTESQGRIHTSAVTVAVLPEADDVEIDIDPKDLKIDVYRSSGPGGQSVNTTDSAVRVTH 248
Query: 310 IPTGMTISIQDERSQHMVK 328
+PT + ++ QDE+SQH K
Sbjct: 249 LPTNLVVTCQDEKSQHKNK 267
>gi|427399863|ref|ZP_18891101.1| peptide chain release factor 1 [Massilia timonae CCUG 45783]
gi|425721140|gb|EKU84054.1| peptide chain release factor 1 [Massilia timonae CCUG 45783]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 145/203 (71%), Gaps = 1/203 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E +D DM D A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 ELLQDPDMKDFAQEEIEAAKERMAGLELELQKMLLPKDANDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY R++++ W+ E+V + SDL GY+E + G G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRFAERNRWQVEMVSESPSDLGGYREVIVRVVGHGAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVKDS 330
TH+PTG+ + QD+RSQH K S
Sbjct: 247 THLPTGLVVECQDDRSQHKNKAS 269
>gi|416224932|ref|ZP_11626756.1| peptide chain release factor 1, partial [Moraxella catarrhalis
103P14B1]
gi|326561958|gb|EGE12292.1| peptide chain release factor 1 [Moraxella catarrhalis 103P14B1]
Length = 319
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKR 153
NK+ R+L +SE+ T ++ ++ + +E D +M +MA +E+ +A +
Sbjct: 32 NKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELLSDPEMKEMALDEIEVARANIET 91
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MY++Y+Q +GW+ EV+
Sbjct: 92 LEERLNVMMLPKDPNDKATAFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E + GYKE A +SG+GVYG+LKFESG HRVQRVP TE GRVHTSA +VA++P+ E
Sbjct: 152 NEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAVMPEV-E 210
Query: 274 VD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+D V + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ Q ERSQH K+
Sbjct: 211 IDDTVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVAECQQERSQHANKE 268
>gi|350427219|ref|XP_003494690.1| PREDICTED: peptide chain release factor 1-like [Bombus impatiens]
Length = 361
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 163/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ +KE +L D ++ S+ + Q++I+ + ++ +D +M +MA EEL A E
Sbjct: 35 FRTLSKEYAQLTDVVNCFSDWKQTQEDIETAEMML----DDPEMAEMAQEELQQAKVREL 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L + L LLPKD D+R+C +EVRAGTGG+EA++FA D+F+MY RY++ K W+ EV+
Sbjct: 91 DLANQLQLLLLPKDPNDDRNCFVEVRAGTGGDEAAIFAGDLFRMYTRYAESKRWRIEVMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + GYKE +SG G YG +KFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 ASEGEHGGYKEIILLVSGDGAYGHMKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+THIPTG+ + QDERSQH K
Sbjct: 211 EAELPDINPSDLRIDTFRSSGAGGQHVNTTDSAIRITHIPTGIVVECQDERSQHKNK 267
>gi|387901185|ref|YP_006331524.1| peptide chain release factor 1 [Burkholderia sp. KJ006]
gi|387576077|gb|AFJ84793.1| Peptide chain release factor 1 [Burkholderia sp. KJ006]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/198 (55%), Positives = 145/198 (73%), Gaps = 1/198 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A EE+ A + RL+ L K LLPKD D+R+ LE+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEEEIRSARERMTRLEGELQKMLLPKDPNDDRNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ + QD+RSQH KD
Sbjct: 251 TGIVVECQDDRSQHKNKD 268
>gi|337754685|ref|YP_004647196.1| peptide chain release factor 1 [Francisella sp. TX077308]
gi|336446290|gb|AEI35596.1| Peptide chain release factor 1 [Francisella sp. TX077308]
Length = 361
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 152/205 (74%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANEAIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EV+ +E + GYKE + I+G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISKINGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDISPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|238019080|ref|ZP_04599506.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748]
gi|237864335|gb|EEP65625.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 177/267 (66%), Gaps = 9/267 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQ 117
D ++++E + + +E+R ++ PE A E+ K ++ +L +++ +
Sbjct: 4 DKLQVIEDKFMDLEQR-------ISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVL 56
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
ID +I + S D++ +MA EEL +++ L+ L LLPKD D+++ I+E+
Sbjct: 57 AGIDEAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEI 116
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ E +L G+KE ++ G VY K+
Sbjct: 117 RGGAGGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKM 176
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTS V+VA+LP+ ++VD+ + +DL+IDTYR+ G+GGQH
Sbjct: 177 KFESGVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQH 236
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
N T SAVR+TH+P+G+ ++ QD+RSQ
Sbjct: 237 INKTESAVRITHLPSGIVVACQDQRSQ 263
>gi|416160021|ref|ZP_11606067.1| peptide chain release factor 1 [Neisseria meningitidis N1568]
gi|433474031|ref|ZP_20431389.1| peptide chain release factor 1 [Neisseria meningitidis 97021]
gi|433482533|ref|ZP_20439790.1| peptide chain release factor 1 [Neisseria meningitidis 2006087]
gi|433484459|ref|ZP_20441681.1| peptide chain release factor 1 [Neisseria meningitidis 2002038]
gi|433486832|ref|ZP_20444022.1| peptide chain release factor 1 [Neisseria meningitidis 97014]
gi|325128768|gb|EGC51631.1| peptide chain release factor 1 [Neisseria meningitidis N1568]
gi|432208563|gb|ELK64540.1| peptide chain release factor 1 [Neisseria meningitidis 97021]
gi|432214958|gb|ELK70850.1| peptide chain release factor 1 [Neisseria meningitidis 2006087]
gi|432219951|gb|ELK75780.1| peptide chain release factor 1 [Neisseria meningitidis 2002038]
gi|432220645|gb|ELK76463.1| peptide chain release factor 1 [Neisseria meningitidis 97014]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|304311492|ref|YP_003811090.1| peptide chain release factor 1 [gamma proteobacterium HdN1]
gi|301797225|emb|CBL45445.1| peptide chain release factor 1 [gamma proteobacterium HdN1]
Length = 362
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 161/235 (68%), Gaps = 3/235 (1%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
++ K ++E +L + ++ R +I + L+ + D +M +M EEL +
Sbjct: 34 QFRKLSQEYAELEPVVTCFADYRKVLADITLARQLMEDS--DPEMREMGAEELRTGQAQR 91
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ + L K +LPKD D R+ LE+RAGTGG+EA++FA D+F+MY RY++ GW+ EV+
Sbjct: 92 DQFELDLQKLMLPKDPNDGRNVYLEIRAGTGGDEAAIFAGDLFRMYSRYAESCGWRVEVI 151
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE + +SG VY KLKFESG HRVQRVP+TE GR+HTSA +VA+LP+A
Sbjct: 152 SEHEGEHGGYKEIISRVSGDSVYSKLKFESGAHRVQRVPVTEAQGRIHTSACTVAVLPEA 211
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE+ D+ +R EDL++DTYRS G+GGQH NTT+SAVR+TH+PTG + Q+ERSQH
Sbjct: 212 DEIGDIDIRPEDLKMDTYRSTGAGGQHVNTTDSAVRLTHLPTGTVVECQEERSQH 266
>gi|253702392|ref|YP_003023581.1| peptide chain release factor 1 [Geobacter sp. M21]
gi|251777242|gb|ACT19823.1| peptide chain release factor 1 [Geobacter sp. M21]
Length = 359
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 168/246 (68%), Gaps = 4/246 (1%)
Query: 81 NLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L++ PE A+ E+ K +KE L + + E + +ID K L+ E D++M +
Sbjct: 19 SLLSDPEVLANQTEFRKLSKEHSGLAELVAAYREYKKILSDIDDNKELLKEP--DQEMRE 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
MA EL + L+ + LLPKD D+++ +LE+RAGTGG+E++LFA D+F+MY
Sbjct: 77 MAQAELLSLEARREELEGEIKLLLLPKDPNDDKNVVLEIRAGTGGDESALFAGDLFRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
R+++ W+ E++ +ES+ G+KE A + G GV+ KLK+ESG HRVQRVP TE GR+
Sbjct: 137 RFAETNRWRVEIISASESEKGGFKEVIALVEGTGVFAKLKYESGTHRVQRVPETEAQGRI 196
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +VA++P+A++VD+ + DL+ID YRS G+GGQH NTT+SAVR+TH+PTG ++
Sbjct: 197 HTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAVRITHLPTGTVVAC 256
Query: 319 QDERSQ 324
Q+ERSQ
Sbjct: 257 QEERSQ 262
>gi|313667936|ref|YP_004048220.1| peptide chain release factor I [Neisseria lactamica 020-06]
gi|313005398|emb|CBN86832.1| peptide chain release factor I [Neisseria lactamica 020-06]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|422110879|ref|ZP_16380738.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378429|emb|CBX22924.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|421538690|ref|ZP_15984865.1| peptide chain release factor 1 [Neisseria meningitidis 93003]
gi|402316360|gb|EJU51909.1| peptide chain release factor 1 [Neisseria meningitidis 93003]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|339499058|ref|YP_004697093.1| peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
gi|338833407|gb|AEJ18585.1| Peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
Length = 356
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 172/266 (64%), Gaps = 11/266 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M +R+ ++ R L+ V P SK K R++ +SE+ +E + L+
Sbjct: 1 MNERLASLLSRFEVLDKEVQDPN-----LSKDQKRYREVMREHAQLSEVVAAHRECEALE 55
Query: 125 SLIYECS------EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E +D +M ++A EEL + + Q L L+PKD DE++ I+E+R
Sbjct: 56 ASIAETQSLIQNEKDPEMKELAKEELKELEVKLQEAQDRLKFLLIPKDPLDEKNIIMEIR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
G GG+EA+LFA D+F+MY RY++ KGWK EV+ + E++L G KE +I+G VY L+
Sbjct: 116 GGAGGDEAALFAADLFRMYSRYAENKGWKIEVMSMNETELGGLKEIIFSIAGKNVYENLR 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP TE SGR+HTS V+VA+LP+A+E ++ ++ EDLRID R+GG GGQ
Sbjct: 176 YESGVHRVQRVPATEASGRIHTSTVTVAVLPEAEETEIEIKQEDLRIDVMRAGGPGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQ 324
NTT+SAVR+THIP+G+ + QDE+SQ
Sbjct: 236 NTTDSAVRITHIPSGIVVHCQDEKSQ 261
>gi|347751863|ref|YP_004859428.1| peptide chain release factor 1 [Bacillus coagulans 36D1]
gi|347584381|gb|AEP00648.1| peptide chain release factor 1 [Bacillus coagulans 36D1]
Length = 356
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 174/265 (65%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE P + + +KE L++++ + E + QK++
Sbjct: 1 MFDRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDLQETVQVYREYKEVQKQLQD 60
Query: 123 LKSLIYEC--SEDKDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
KSL+ E E KDM+ EL I E E+RL+ LLL PKD DE++ I+E+R
Sbjct: 61 AKSLLSEKLDPEMKDMVKEEIHELESKIPEYEERLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GG+EA+LFA D+++MY RY++ +GWK +V+ + + GYKE ++G G Y KLKF
Sbjct: 117 AAGGDEAALFAGDLYRMYMRYAESQGWKIDVIEANVTGIGGYKEIVFMVNGKGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
E+G HRVQRVP TE GR+HTS +VA+LP+A+EV+V + +D+R+DT+ S G GGQ N
Sbjct: 177 ENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT SAVR+THIPTG+ +S QDE+SQ
Sbjct: 237 TTMSAVRLTHIPTGIVVSCQDEKSQ 261
>gi|340029419|ref|ZP_08665482.1| peptide chain release factor 1 [Paracoccus sp. TRP]
Length = 352
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 174/267 (65%), Gaps = 20/267 (7%)
Query: 66 EQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
+ R+ I R LE +N A P E + ++E +L+ + I E R Q I ++
Sbjct: 4 QDRLNQIVERFEYLEARLNAGPA-PDEIAAISREYAELKPVVAQIGEWRAAQDGIREAQA 62
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK-------SLLPKDDADERDCILEVR 178
++ D +M ++A +EL RL+SLL +LLP+D AD R ILE+R
Sbjct: 63 MLA----DPEMRELAEDELS-------RLRSLLPDLEHALRIALLPRDAADARPAILEIR 111
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
GTGGEEA+LFA D+ MY R+++ +GW+F+++ + ESDL G +EA A I G GV+ +LK
Sbjct: 112 PGTGGEEAALFAADLLNMYRRFAESQGWQFQLLELAESDLGGVREAVARIEGEGVFARLK 171
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP TE GR+HTSA +VA+LP+A EVD+ + D+RIDT R+ G+GGQH
Sbjct: 172 YESGVHRVQRVPETESGGRIHTSAATVAVLPEAQEVDIEIPANDIRIDTMRASGAGGQHV 231
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 232 NTTDSAVRITHLPTGIVVT-SSEKSQH 257
>gi|422654390|ref|ZP_16717133.1| peptide chain release factor 1 [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330967416|gb|EGH67676.1| peptide chain release factor 1 [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYTQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLVELEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGESVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|384899588|ref|YP_005774968.1| peptide chain release factor 1 [Helicobacter pylori F30]
gi|317179532|dbj|BAJ57320.1| peptide chain release factor 1 [Helicobacter pylori F30]
Length = 352
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY KLKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSKLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|220927713|ref|YP_002504622.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
gi|254790874|sp|B8I562.1|RF1_CLOCE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219998041|gb|ACL74642.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
Length = 359
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 174/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P+ + EY K KE L + + E KEI+
Sbjct: 1 MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKECSDLEEIVQKYREYTKVTKEIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ E + DKD +M +E A ++ + ++ L ++PKD D+++ I+E+R G G
Sbjct: 61 ARELL-EQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+ +Y++KK WK+E++ ++L G+KE I G G Y +LKFESG
Sbjct: 120 GEEAALFAGVLFRAMAKYAEKKRWKYEILDSNPTELGGFKEVVFTIEGKGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS ++VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+TH+PTG+ +S QDERSQH KD
Sbjct: 240 SAIRITHMPTGIVVSCQDERSQHKNKD 266
>gi|167644945|ref|YP_001682608.1| peptide chain release factor 1 [Caulobacter sp. K31]
gi|167347375|gb|ABZ70110.1| peptide chain release factor 1 [Caulobacter sp. K31]
Length = 334
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 169/233 (72%), Gaps = 10/233 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ +++ E + D +M M ++E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVQALAKLAAERADLE-------EMTADPEMAAMVSDEIQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L P+D + ILEVRAGTGG+EA+LFA D+F+MY+RY+Q +GWK EV
Sbjct: 66 VMERELALMLAPRDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQLQGWKVEVDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E ++ GYKE A+++G GV+G+ KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 VSEGEMGGYKEIIASVTGDGVFGRWKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+V++ + + D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 186 DVEIEINDADIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 237
>gi|421498082|ref|ZP_15945221.1| peptide chain release factor 1 [Aeromonas media WS]
gi|407182902|gb|EKE56820.1| peptide chain release factor 1 [Aeromonas media WS]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 157/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R ++ ++ K ++ E +D D+ +MA EEL LA +
Sbjct: 31 YRALTREYAQLEDIVHAFQRFRQAEENLETTKMMLEE--DDADLREMAQEELPLAKATFE 88
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L LLP+D D+ +C LE+RAG GG+EA++FA D+F+MY RY++++GW+ +V
Sbjct: 89 EQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVS 148
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A + G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 149 CNDGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 208
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + +L+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 209 EAEQIEINPSELKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 262
>gi|421566006|ref|ZP_16011768.1| peptide chain release factor 1 [Neisseria meningitidis NM3081]
gi|402341888|gb|EJU77060.1| peptide chain release factor 1 [Neisseria meningitidis NM3081]
Length = 358
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|302879738|ref|YP_003848302.1| peptide chain release factor 1 [Gallionella capsiferriformans ES-2]
gi|302582527|gb|ADL56538.1| peptide chain release factor 1 [Gallionella capsiferriformans ES-2]
Length = 362
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 155/237 (65%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K N+E +L + L + + +I + E +ED +M + A E+ +
Sbjct: 35 YRKLNRERAELEPVVDLFHAYQACEGDIAAAR----EMAEDPEMREFADTEIKEGEAKLA 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L L LLPKD DER LEVRAGTGG+EA+LFA D+F+MY R+++++ W+ EVV
Sbjct: 91 LLDKELQTQLLPKDPNDERSVFLEVRAGTGGDEAALFAGDLFRMYSRFAERRRWQVEVVS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ ++ GYKE A I+G G Y LKFESG HRVQRVP TE GRVHTSA +VAI+P+ D
Sbjct: 151 ESPGEMGGYKEIIARIAGQGAYSVLKFESGAHRVQRVPATETQGRVHTSACTVAIMPEVD 210
Query: 273 EV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
EV DV L N DLRIDT+R+ G+GGQH N T+SAVR+THIPTG+ + QD RSQH K
Sbjct: 211 EVNDVVLNNADLRIDTFRASGAGGQHINKTDSAVRITHIPTGVVVECQDGRSQHQNK 267
>gi|238899147|ref|YP_002924829.1| peptide chain release factor RF-1 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|259585226|sp|C4K7Y8.1|RF1_HAMD5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229466907|gb|ACQ68681.1| peptide chain release factor RF-1 [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 162/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L + L +E Q ++ KSL+ +D +M +MATEEL A + +
Sbjct: 35 FRMMSREYAQLSNIAELFTEWLKLQNDMIAAKSLL----QDPEMHEMATEELEKAKIQSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L L LLPKD D R C LE+RAGTGG+EA++FA D+F+MY RY++ + WK E++
Sbjct: 91 QLTQQLQILLLPKDIDDSRSCFLEIRAGTGGDEAAIFAGDLFRMYARYAESRSWKMEIIS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 AHEGEHGGYKEMITKISGEGVYGQLKFESGGHRVQRVPTTESQGRIHTSACTVAVMPEIP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ ++ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EEELPKITLSDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|167855820|ref|ZP_02478572.1| peptide chain release factor 1 [Haemophilus parasuis 29755]
gi|219871001|ref|YP_002475376.1| peptide chain release factor 1 [Haemophilus parasuis SH0165]
gi|254790883|sp|B8F526.1|RF1_HAEPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|167853033|gb|EDS24295.1| peptide chain release factor 1 [Haemophilus parasuis 29755]
gi|219691205|gb|ACL32428.1| peptide chain release factor 1 [Haemophilus parasuis SH0165]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM ++A EE+ E ++L+ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKEIAAEEIEANKAEIEQLEQNLQILLLPKDPNDEYNCFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY++ K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYAESKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|366053830|ref|ZP_09451552.1| peptide chain release factor 1 [Lactobacillus suebicus KCTC 3549]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/261 (42%), Positives = 177/261 (67%), Gaps = 3/261 (1%)
Query: 67 QRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
+++ A+ R L L++ P+ A ++ K +KE LRD++ +E + ++I +
Sbjct: 6 EKLQAVADRYDELNELISDPDVIADTQKFMKLSKEEGSLRDTVEKYNEYKKINQQISDDE 65
Query: 125 SLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGE 184
L+ E D +M ++ EEL + ++ ++L+ L LLPKD D+++ I+E+ GG+
Sbjct: 66 ELLREKL-DSEMEELTKEELSDSKEQLEKLEQELRVLLLPKDPNDDKNIIMEIHGAAGGD 124
Query: 185 EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIH 244
EASLFA D+F+MY RY++K+GW EVV E+++ G+KE I+G VY KLK+E+G H
Sbjct: 125 EASLFAADLFEMYSRYAEKQGWTIEVVDRNETEVGGFKEIVLMITGDSVYSKLKYENGAH 184
Query: 245 RVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304
RVQRVP+TE +GRVHTS +V ++P+A++VD+ L +D+R D YRS G+GGQH N T+SA
Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDIDLDPKDIRTDVYRSSGAGGQHINKTSSA 244
Query: 305 VRVTHIPTGMTISIQDERSQH 325
VR+TH+PTG+ +++QD+RSQ
Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQ 265
>gi|254876395|ref|ZP_05249105.1| peptide chain release factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842416|gb|EET20830.1| peptide chain release factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 361
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 151/205 (73%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|237799727|ref|ZP_04588188.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022582|gb|EGI02639.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 160/230 (69%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L +L Q +++G ++L+ + D DM DMA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYKQLIKVQADLEGAQALLKDS--DPDMRDMAVEEVRETKQQLVDLEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|167627296|ref|YP_001677796.1| peptide chain release factor 1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189039973|sp|B0TX37.1|RF1_FRAP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|167597297|gb|ABZ87295.1| peptide chain release factor 1 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 361
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/205 (52%), Positives = 151/205 (73%), Gaps = 3/205 (1%)
Query: 124 KSLIYECSEDKD--MLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
K YE +KD +++MA EEL A + +RL+ L LLP+D D+ + LE+RAGT
Sbjct: 62 KEAAYEMLNEKDAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIRAGT 121
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EAS+F+ D+FKMY +Y++++GWK EVV +E + GYKE + I G GVY +LKFES
Sbjct: 122 GGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLKFES 181
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANT 300
G HRVQRVP TE GR+HTSA +VA++P+ADEV+ + + D+++DT+R+ G+GGQH N
Sbjct: 182 GAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQHVNK 241
Query: 301 TNSAVRVTHIPTGMTISIQDERSQH 325
T+SA+R+THIPTG+ + QD+RSQH
Sbjct: 242 TDSAIRITHIPTGVVVECQDQRSQH 266
>gi|427412428|ref|ZP_18902620.1| peptide chain release factor 1 [Veillonella ratti ACS-216-V-Col6b]
gi|425716235|gb|EKU79219.1| peptide chain release factor 1 [Veillonella ratti ACS-216-V-Col6b]
Length = 361
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/276 (41%), Positives = 181/276 (65%), Gaps = 9/276 (3%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISEL 113
M+ D ++++E + + +E+R ++ PE A E+ K ++ L ++++ E
Sbjct: 1 MVLVDKLQVIEDKFMDLEQR-------ISDPEVIARQQEWQKLTRQHASLTETVNTFREY 53
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
+ +D ++ + S D++ +MA EEL + ++ L+ L LLPKD DE++
Sbjct: 54 KQVLAGLDEALEVVEDKSLDEEFREMAQEELKELKERKEVLEEQLHILLLPKDPNDEKNV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
I+E+R G GG+EA+LFA D+F+MY +Y++ +GW+ E++ +L G+KE ++ G
Sbjct: 114 IVEIRGGAGGDEAALFAGDLFRMYTKYAEAQGWRCEIIDANAPELGGFKEVVFSVDGNSA 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
Y KLKFESG+HRVQRVP TE SGR+HTS V+VA+LP+A++VD+ + ++DL+IDTY + G+
Sbjct: 174 YSKLKFESGVHRVQRVPETESSGRIHTSTVTVAVLPEAEDVDIEINDKDLQIDTYCASGA 233
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
GGQH N T SAVR+TH PTG+ ++ QDERSQ KD
Sbjct: 234 GGQHVNRTESAVRITHKPTGIVVACQDERSQLKNKD 269
>gi|336115487|ref|YP_004570254.1| peptide chain release factor 1 [Bacillus coagulans 2-6]
gi|335368917|gb|AEH54868.1| peptide chain release factor 1 [Bacillus coagulans 2-6]
Length = 356
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 174/265 (65%), Gaps = 9/265 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ A+E R L L++ PE P + + +KE L++++ + E + QK++
Sbjct: 1 MFDRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDLQETVQVYREYKEVQKQLRD 60
Query: 123 LKSLIYEC--SEDKDMLDMATEELCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRA 179
KSL+ E E KDM+ EL I E E+RL+ LLL PKD DE++ I+E+R
Sbjct: 61 AKSLLSEKLDPEMKDMVKEEIHELESKIPEYEERLKILLL----PKDPNDEKNVIVEIRG 116
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GG+EA+LFA D+++MY RY++ +GWK +V+ + + GYKE ++G G Y KLKF
Sbjct: 117 AAGGDEAALFAGDLYRMYTRYAESQGWKIDVIEANVTGIGGYKEIVFMVNGKGAYSKLKF 176
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
E+G HRVQRVP TE GR+HTS +VA+LP+A+EV+V + +D+R+DT+ S G GGQ N
Sbjct: 177 ENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVN 236
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQ 324
TT SAVR+THIPTG+ +S QDE+SQ
Sbjct: 237 TTMSAVRLTHIPTGIVVSCQDEKSQ 261
>gi|295677813|ref|YP_003606337.1| peptide chain release factor 1 [Burkholderia sp. CCGE1002]
gi|295437656|gb|ADG16826.1| peptide chain release factor 1 [Burkholderia sp. CCGE1002]
Length = 360
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 175/268 (65%), Gaps = 7/268 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++++ + R A L +L+++ + A+ +Y K +E +L + R Q +
Sbjct: 5 MQRKLDQLTTRLAELNDLLSREDITANLDQYRKLTREHAELGPVVEHYGLWRQAQNDAAT 64
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + S M D A EE+ A D + L L K LLPKD DER+ LE+RAGTG
Sbjct: 65 AQELLADAS----MRDFAEEEIRAARDRMETLGVELQKMLLPKDPNDERNIFLEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+ +MY RY+++ W+ E++ +ESDL GY+E I+G Y KLKFESG
Sbjct: 121 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYREVIVRIAGDAAYSKLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SAVRVTH+PTG+ + QD+RSQH KD
Sbjct: 241 DSAVRVTHLPTGIVVECQDDRSQHKNKD 268
>gi|444428527|ref|ZP_21223851.1| peptide chain release factor 1 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238236|gb|ELU49853.1| peptide chain release factor 1 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 362
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 169/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ +E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSSEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|420403221|ref|ZP_14902407.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
gi|393020387|gb|EJB21526.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
Length = 352
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 177/269 (65%), Gaps = 8/269 (2%)
Query: 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123
I+ Q++ +I +R L L+ S AE K+L +L I E+ KE +
Sbjct: 3 ILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSV 57
Query: 124 KSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
I E E DK+++++A EEL + ++ L++ + + L+PKD D+++ LE+RAG
Sbjct: 58 LENIKENKELLEDKELIELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAG 117
Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
TGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE
Sbjct: 118 TGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFE 177
Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
+G HRVQRVP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ NT
Sbjct: 178 AGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNT 237
Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329
T+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 238 TDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|163784022|ref|ZP_02178981.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880707|gb|EDP74252.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
Length = 359
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 174/248 (70%), Gaps = 4/248 (1%)
Query: 79 LENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+E + PE + P + + KE + L + L + +K I K L++ S+D++M
Sbjct: 19 VEEKLASPEVANNPKQLQELAKEHKHLAYVVELFNRYENIEKSIKETKELLH--SQDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+A EEL ++++L+S + +L+PKD D+++ ILE+R G GG+EA+LFA ++F+M
Sbjct: 77 RLLAEEELENLKSQKEKLESEIQIALIPKDPNDDKNVILEIRQGAGGDEAALFAAELFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y+RY++K GWK E++ + E++ G KE A I G G Y KLK+ESG+HRVQRVP TE SG
Sbjct: 137 YQRYAEKNGWKVEILSLHENERGGIKEVIALIKGEGAYSKLKYESGVHRVQRVPETESSG 196
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
R+HTS +VA+LP+A+EVDV + +DL+I+T R+ G+GGQH NTT+SAVR+THIPTG+ +
Sbjct: 197 RIHTSTATVAVLPEAEEVDVEINPDDLKIETMRASGAGGQHVNTTDSAVRITHIPTGIVV 256
Query: 317 SIQDERSQ 324
S QDERSQ
Sbjct: 257 SCQDERSQ 264
>gi|15677534|ref|NP_274690.1| peptide chain release factor 1 [Neisseria meningitidis MC58]
gi|385850774|ref|YP_005897289.1| peptide chain release factor 1 [Neisseria meningitidis M04-240196]
gi|385852716|ref|YP_005899230.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|416182173|ref|ZP_11611923.1| peptide chain release factor 1 [Neisseria meningitidis M13399]
gi|433465662|ref|ZP_20423135.1| peptide chain release factor 1 [Neisseria meningitidis NM422]
gi|433488865|ref|ZP_20446018.1| peptide chain release factor 1 [Neisseria meningitidis M13255]
gi|433491049|ref|ZP_20448165.1| peptide chain release factor 1 [Neisseria meningitidis NM418]
gi|433505594|ref|ZP_20462528.1| peptide chain release factor 1 [Neisseria meningitidis 9506]
gi|433507677|ref|ZP_20464579.1| peptide chain release factor 1 [Neisseria meningitidis 9757]
gi|433509844|ref|ZP_20466704.1| peptide chain release factor 1 [Neisseria meningitidis 12888]
gi|433511878|ref|ZP_20468695.1| peptide chain release factor 1 [Neisseria meningitidis 4119]
gi|20139351|sp|Q9JY93.1|RF1_NEIMB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|7226940|gb|AAF42034.1| peptide chain release factor 1 [Neisseria meningitidis MC58]
gi|325134780|gb|EGC57417.1| peptide chain release factor 1 [Neisseria meningitidis M13399]
gi|325199720|gb|ADY95175.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|325205597|gb|ADZ01050.1| peptide chain release factor 1 [Neisseria meningitidis M04-240196]
gi|432201307|gb|ELK57389.1| peptide chain release factor 1 [Neisseria meningitidis NM422]
gi|432221940|gb|ELK77742.1| peptide chain release factor 1 [Neisseria meningitidis M13255]
gi|432225995|gb|ELK81729.1| peptide chain release factor 1 [Neisseria meningitidis NM418]
gi|432239749|gb|ELK95296.1| peptide chain release factor 1 [Neisseria meningitidis 9506]
gi|432240115|gb|ELK95658.1| peptide chain release factor 1 [Neisseria meningitidis 9757]
gi|432245146|gb|ELL00618.1| peptide chain release factor 1 [Neisseria meningitidis 12888]
gi|432245905|gb|ELL01368.1| peptide chain release factor 1 [Neisseria meningitidis 4119]
Length = 358
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|342732944|ref|YP_004771783.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456312|ref|YP_005668909.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417960276|ref|ZP_12602903.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-1]
gi|417962249|ref|ZP_12604501.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-2]
gi|417963914|ref|ZP_12605757.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-3]
gi|417964957|ref|ZP_12606590.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-4]
gi|417967756|ref|ZP_12608821.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-co]
gi|418015648|ref|ZP_12655213.1| peptide chain release factor RF1 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373195|ref|ZP_12965286.1| Peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330399|dbj|BAK57041.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505983|gb|EGX28277.1| peptide chain release factor RF1 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984657|dbj|BAK80333.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330785|gb|EIA21960.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-2]
gi|380331373|gb|EIA22428.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-3]
gi|380331379|gb|EIA22433.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-1]
gi|380339458|gb|EIA28195.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-4]
gi|380340794|gb|EIA29344.1| Peptide chain release factor 1 [Candidatus Arthromitus sp. SFB-co]
gi|380341584|gb|EIA30058.1| Peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 175/262 (66%), Gaps = 3/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M QR+ +E++ L ++ PE ++ E+ K K+ +L E + +I+
Sbjct: 1 MLQRLDFLEQKYEELSIKISDPEVMSNQKEWQKLCKDHSELEVITLKYREYKKVLDDIEY 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ + EDK+ ++A EE+ + + +++ L LLPKD DE++ +E+RAGTG
Sbjct: 61 SKEML-DDEEDKEFRELAQEEIKELQNNKITIENELKILLLPKDPNDEKNVFVEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA ++F+MY +Y + K WK E++ V ++D+ G+KE I G G Y KLK+ESG
Sbjct: 120 GDEAALFAANLFRMYSKYVENKRWKIEMISVNDTDIGGFKEVVFMIKGSGAYSKLKYESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA+LP+ D+VDV + DLRID +RS G+GGQ NTT+
Sbjct: 180 VHRVQRVPDTEASGRIHTSAATVAVLPEVDDVDVEINQNDLRIDVFRSSGNGGQSVNTTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIP+G+ IS QDE+SQ
Sbjct: 240 SAVRITHIPSGIVISCQDEKSQ 261
>gi|160935042|ref|ZP_02082428.1| hypothetical protein CLOLEP_03918 [Clostridium leptum DSM 753]
gi|156866495|gb|EDO59867.1| peptide chain release factor 1 [Clostridium leptum DSM 753]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 167/248 (67%), Gaps = 4/248 (1%)
Query: 82 LVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141
+V+ PEA Y+ KE++ L + E + ++ + K L+ E +KD +M
Sbjct: 24 VVSDPEA----YAALMKEVKGLEPVVEKYKEYKKQKNNEEEAKQLLAEGGLEKDFREMVE 79
Query: 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYS 201
EL A + +++ L LLPKD D+R+ I+E+R G GGEEA+LF+ +F+MY Y+
Sbjct: 80 LELEEARESLEKISEELKILLLPKDPNDDRNVIVEIRGGAGGEEAALFSASLFRMYSMYA 139
Query: 202 QKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261
+ K WK E++ E++L GYKE S I+G G Y ++K+ESG+HRVQRVP TE GR+HTS
Sbjct: 140 ETKRWKTEILNANETELGGYKEISFMITGEGAYSRMKYESGVHRVQRVPETETQGRIHTS 199
Query: 262 AVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDE 321
V+VA+LP+A++V+V + DL+IDT+RSGG+GGQH N T+SA+R+TH+PTG+ + QDE
Sbjct: 200 TVTVAVLPEAEDVEVEINPSDLKIDTFRSGGAGGQHINKTDSAIRITHLPTGLVVECQDE 259
Query: 322 RSQHMVKD 329
RSQ+ KD
Sbjct: 260 RSQYKNKD 267
>gi|257453431|ref|ZP_05618726.1| peptide chain release factor 1 [Enhydrobacter aerosaccus SK60]
gi|257449183|gb|EEV24131.1| peptide chain release factor 1 [Enhydrobacter aerosaccus SK60]
Length = 364
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 163/250 (65%), Gaps = 10/250 (4%)
Query: 89 SPAEYSKANKELRKLRDSMHLISEL-------RTKQKEIDGLKSLIYECSEDKDMLDMAT 141
S E NK+ R+L +S L R ++++ + ++ + + D DM +MA
Sbjct: 24 SEPETMNDNKKFRELSVEHSDLSALVDVWGKYRQAEEDLATAEEMLSDATGDGDMKEMAQ 83
Query: 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYS 201
EE+ A D L+ +L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MYERY+
Sbjct: 84 EEIQAAKDTINELEDVLNVMMLPKDPNDKVPAFLEIRAGTGGDEAAIFSGDLFRMYERYA 143
Query: 202 QKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261
+GW+ EV+ E + GYKE + +SG GVYG+LKFESG HRVQRVP TE GRVHTS
Sbjct: 144 ATQGWQVEVLSENEGEHGGYKEIISRVSGTGVYGRLKFESGAHRVQRVPETESQGRVHTS 203
Query: 262 AVSVAILPQADEVD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319
A +VA++P+ E+D V + DLRIDTYR+ G+GGQH N T+SAVR+THIPTG + Q
Sbjct: 204 ACTVAVMPEV-EIDDTVDINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQ 262
Query: 320 DERSQHMVKD 329
ERSQH +D
Sbjct: 263 QERSQHANRD 272
>gi|385229393|ref|YP_005789309.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
gi|344335831|gb|AEN17792.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
Length = 352
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 150/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+VG +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVGSSENSVGGYKEIIALIKGRGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|410694810|ref|YP_003625432.1| Peptide chain release factor 1 (RF-1) [Thiomonas sp. 3As]
gi|294341235|emb|CAZ89636.1| Peptide chain release factor 1 (RF-1) [Thiomonas sp. 3As]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 173/260 (66%), Gaps = 7/260 (2%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
++RR+ L+ L+ P+ A + +EL +L+ + L + +TK +++ +SL+
Sbjct: 12 MQRRADELDALLAAPDCTADLQRFRNMTRELAELQAVVGLYVQYKTKTEDLSQAESLL-- 69
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM ++A +E+ A L++ L +LLP+D D R+ +E+RAGTGGEE++LF
Sbjct: 70 --SDPDMKELAQQEIQDARAALDALEARLQVALLPRDPDDSRNVFVEIRAGTGGEESALF 127
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY RY+++K W EV+ + SDL GYKE ++G G YG LK+ESG HRVQRV
Sbjct: 128 AADLLRMYARYAERKRWTTEVISESPSDLGGYKEVILRVAGEGAYGLLKYESGGHRVQRV 187
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VA++P+ DE +++ DLRIDT+R+ G+GGQH N T+SA+R+T
Sbjct: 188 PKTETQGRIHTSAATVAVMPEVDEAQAIQINPSDLRIDTFRASGAGGQHINKTDSAIRIT 247
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 248 HLPTGLVVECQDERSQHRNK 267
>gi|312958850|ref|ZP_07773369.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6]
gi|311286620|gb|EFQ65182.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 162/236 (68%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A++ +KE ++ + + +++G ++L+ + D DM +MA EE+ A D+
Sbjct: 33 AKFRAYSKEYAEVEPVVTTYGQWLKTHADLEGAQALLKDS--DPDMREMAVEEVREAKDK 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LIALEGDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGENVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|260914191|ref|ZP_05920664.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325]
gi|260631824|gb|EEX50002.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D M +MA EE+ E ++++ L LLPKD DE +C LE+RAGTGG+EA +FA
Sbjct: 70 DDLSMKEMAQEEIEECKAELEQVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++ K W+ EV+ ES+ GYKE +SG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLFRMYSRYAEGKRWRIEVLSANESEQGGYKEIIVKVSGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|227824241|ref|ZP_03989073.1| peptide chain release factor [Acidaminococcus sp. D21]
gi|352683945|ref|YP_004895929.1| peptide chain release factor [Acidaminococcus intestini RyC-MR95]
gi|226904740|gb|EEH90658.1| peptide chain release factor [Acidaminococcus sp. D21]
gi|350278599|gb|AEQ21789.1| peptide chain release factor [Acidaminococcus intestini RyC-MR95]
Length = 359
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 172/263 (65%), Gaps = 10/263 (3%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ A+E R LE ++ P + A++ K K KL D + + QK D ++
Sbjct: 7 KLQALEDRYIDLEAKISDPSVISDQAQWQKYTKAHAKLTDVVETYRAYQKLQKTYDDDQA 66
Query: 126 LIYECSEDKD---MLDMATEELCLAI-DEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181
L+ D++ M +M +EL + D EKRL LLL PKD DE++ I+E+RAG
Sbjct: 67 LLEMGESDEELAAMAEMEMKELAPQLEDYEKRLTILLL----PKDPNDEKNIIMEIRAGA 122
Query: 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFES 241
GG+EA+LFA D+F+MY RY++ KGW+ E++ + + L G+KE +SG VY +KFES
Sbjct: 123 GGDEAALFAGDLFRMYTRYAETKGWRVELMDSSPTGLGGFKEVIFMVSGSDVYSHMKFES 182
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTS +VA++P+A+EVDV ++ D+RIDTYR+GG+GGQ+ N T
Sbjct: 183 GVHRVQRVPETEAQGRIHTSTATVAVMPEAEEVDVDIKMSDIRIDTYRAGGAGGQYVNKT 242
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ QDE+SQ
Sbjct: 243 ESAVRMTHIPTGIVAQCQDEKSQ 265
>gi|302339534|ref|YP_003804740.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293]
gi|301636719|gb|ADK82146.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293]
Length = 355
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 166/236 (70%), Gaps = 9/236 (3%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-- 150
Y + ++E L+D++ + I+ K L+ E D +M +MA EL D
Sbjct: 31 YKELSQEHAALKDTVEEFGHYKELLSGIEETKQLL-ESESDHEMREMAEVELEELKDHLE 89
Query: 151 --EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
EKRL++LL+ PKD D ++ I+E+RAGTGG+EASLFA D+++MY R+S++KGWK
Sbjct: 90 KSEKRLKTLLV----PKDPLDGKNTIIEIRAGTGGDEASLFAADLYRMYSRFSEQKGWKL 145
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
E++ +++++ G+KE +ISG VYG L++ESG+HRVQRVP TE GR+HTSAV+VA+L
Sbjct: 146 EMMESSDTEVGGFKEVIFSISGKEVYGNLRYESGVHRVQRVPSTESQGRIHTSAVTVAVL 205
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
P+A++ D+ + EDL+ID +RS G GGQ NTT+SAVRVTHIPTG+ ++ QDE+SQ
Sbjct: 206 PEAEKTDIDISPEDLKIDVFRSSGPGGQSVNTTDSAVRVTHIPTGVVVTCQDEKSQ 261
>gi|294678208|ref|YP_003578823.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
gi|294477028|gb|ADE86416.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
Length = 351
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 163/236 (69%), Gaps = 5/236 (2%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAID 149
PAE + ++E LR +++E+ ++ +D L S D +M +A EEL
Sbjct: 27 PAEIATLSREYSDLRP---VVTEIAAYRQSLDDLAEAEGWLS-DPEMKTLAEEELPRLKA 82
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
++ L +LLPKD AD R ILE+R GTGGEEA+LFA D+++MYER+++K GW+FE
Sbjct: 83 RIPAMEQALRLALLPKDAADARPAILEIRPGTGGEEAALFAHDLWRMYERHAEKMGWRFE 142
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
+ T ++L G KEA A I G GV+ +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP
Sbjct: 143 RLEFTATELGGVKEAMARIEGEGVFARLKYESGVHRVQRVPETEAGGRIHTSAATVAVLP 202
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+A+EVD+ + D+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 203 EAEEVDIDIPAADIRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIIVT-SSEKSQH 257
>gi|145632952|ref|ZP_01788685.1| peptide chain release factor 1 [Haemophilus influenzae 3655]
gi|144986608|gb|EDJ93174.1| peptide chain release factor 1 [Haemophilus influenzae 3655]
Length = 361
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L + + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEDVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|121635327|ref|YP_975572.1| peptide chain release factor 1 [Neisseria meningitidis FAM18]
gi|385340540|ref|YP_005894412.1| peptide chain release factor 1 [Neisseria meningitidis G2136]
gi|416176949|ref|ZP_11609868.1| peptide chain release factor 1 [Neisseria meningitidis M6190]
gi|416190790|ref|ZP_11615901.1| peptide chain release factor 1 [Neisseria meningitidis ES14902]
gi|421544981|ref|ZP_15991048.1| peptide chain release factor 1 [Neisseria meningitidis NM140]
gi|421547070|ref|ZP_15993109.1| peptide chain release factor 1 [Neisseria meningitidis NM183]
gi|421549316|ref|ZP_15995333.1| peptide chain release factor 1 [Neisseria meningitidis NM2781]
gi|421553276|ref|ZP_15999241.1| peptide chain release factor 1 [Neisseria meningitidis NM576]
gi|421557699|ref|ZP_16003598.1| peptide chain release factor 1 [Neisseria meningitidis 80179]
gi|433467767|ref|ZP_20425217.1| peptide chain release factor 1 [Neisseria meningitidis 87255]
gi|433493073|ref|ZP_20450160.1| peptide chain release factor 1 [Neisseria meningitidis NM586]
gi|433495189|ref|ZP_20452252.1| peptide chain release factor 1 [Neisseria meningitidis NM762]
gi|433497362|ref|ZP_20454392.1| peptide chain release factor 1 [Neisseria meningitidis M7089]
gi|433499455|ref|ZP_20456460.1| peptide chain release factor 1 [Neisseria meningitidis M7124]
gi|433501391|ref|ZP_20458373.1| peptide chain release factor 1 [Neisseria meningitidis NM174]
gi|433503455|ref|ZP_20460413.1| peptide chain release factor 1 [Neisseria meningitidis NM126]
gi|166223577|sp|A1KV95.1|RF1_NEIMF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120867033|emb|CAM10796.1| peptide chain release factor I [Neisseria meningitidis FAM18]
gi|325132818|gb|EGC55498.1| peptide chain release factor 1 [Neisseria meningitidis M6190]
gi|325138721|gb|EGC61273.1| peptide chain release factor 1 [Neisseria meningitidis ES14902]
gi|325198784|gb|ADY94240.1| peptide chain release factor 1 [Neisseria meningitidis G2136]
gi|402322042|gb|EJU57512.1| peptide chain release factor 1 [Neisseria meningitidis NM183]
gi|402322268|gb|EJU57732.1| peptide chain release factor 1 [Neisseria meningitidis NM140]
gi|402324138|gb|EJU59575.1| peptide chain release factor 1 [Neisseria meningitidis NM2781]
gi|402328408|gb|EJU63779.1| peptide chain release factor 1 [Neisseria meningitidis NM576]
gi|402333862|gb|EJU69158.1| peptide chain release factor 1 [Neisseria meningitidis 80179]
gi|432201652|gb|ELK57728.1| peptide chain release factor 1 [Neisseria meningitidis 87255]
gi|432226864|gb|ELK82584.1| peptide chain release factor 1 [Neisseria meningitidis NM586]
gi|432228721|gb|ELK84417.1| peptide chain release factor 1 [Neisseria meningitidis NM762]
gi|432232319|gb|ELK87965.1| peptide chain release factor 1 [Neisseria meningitidis M7089]
gi|432233021|gb|ELK88655.1| peptide chain release factor 1 [Neisseria meningitidis M7124]
gi|432233860|gb|ELK89484.1| peptide chain release factor 1 [Neisseria meningitidis NM174]
gi|432239476|gb|ELK95029.1| peptide chain release factor 1 [Neisseria meningitidis NM126]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|186477469|ref|YP_001858939.1| peptide chain release factor 1 [Burkholderia phymatum STM815]
gi|238691299|sp|B2JHK8.1|RF1_BURP8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|184193928|gb|ACC71893.1| peptide chain release factor 1 [Burkholderia phymatum STM815]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ + + + L+S L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLSDASMKDFAEEEIRASRERMETLESELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 247 THLPTGIVVECQDDRSQHKNKD 268
>gi|417845579|ref|ZP_12491605.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21639]
gi|341954648|gb|EGT81121.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21639]
Length = 361
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKTEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|422587436|ref|ZP_16662107.1| peptide chain release factor 1 [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330873307|gb|EGH07456.1| peptide chain release factor 1 [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYTQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLVELEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|89073091|ref|ZP_01159630.1| peptide chain release factor 1 [Photobacterium sp. SKA34]
gi|89051044|gb|EAR56501.1| peptide chain release factor 1 [Photobacterium sp. SKA34]
Length = 362
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L L+PKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++++GW+ E++ S+ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAERRGWRIEIINENRSEQGGYKEMIAKVNGDGAYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEIPEAEIPEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|376259649|ref|YP_005146369.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
gi|373943643|gb|AEY64564.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
Length = 359
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 175/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P+ + EY K KE L + + E KEI+
Sbjct: 1 MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKEYSDLEEIVQKYREYTKVTKEIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + + DKD +M +E A ++ + ++ L ++PKD D+++ I+E+R G G
Sbjct: 61 ARELL-DQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+ +Y++KK WK+E++ ++L G+KE +I G G Y +LKFESG
Sbjct: 120 GEEAALFAGVLFRAMTKYAEKKRWKYEIMDSNPTELGGFKEVVFSIEGKGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS ++VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+TH+PTG+ +S QDERSQH KD
Sbjct: 240 SAIRITHMPTGIVVSCQDERSQHKNKD 266
>gi|374339433|ref|YP_005096169.1| peptide chain release factor 1 [Marinitoga piezophila KA3]
gi|372100967|gb|AEX84871.1| peptide chain release factor 1 [Marinitoga piezophila KA3]
Length = 356
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 167/235 (71%), Gaps = 4/235 (1%)
Query: 100 LRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-EKRLQSL- 157
L+ L + +S L+ ++ +G+ I E K ++ EE ++E EK L+S
Sbjct: 33 LQSLGKEHNRLSTLKELFEKYEGITEDIKALEELKHAEEIDEEEYNSMVEESEKNLKSCY 92
Query: 158 --LLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTE 215
+L L+P ++ +ER+ I+E+RAGTGGEEA+LFA D+ +MY RY++ KGWK E++ +++
Sbjct: 93 LEILSLLIPGNEINERNIIMEIRAGTGGEEAALFASDLMRMYLRYAENKGWKHEIMELSD 152
Query: 216 SDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD 275
+ + G K A I G GV+G+LK+ESG+HRVQRVP+TE GR+HTS +VA+LP+A +VD
Sbjct: 153 TGIGGTKNAVIKIKGKGVFGRLKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEATDVD 212
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS 330
V++ ++DLRIDTYR+GG+GGQH N T SAVR+ H+PTG+ ++ Q+ERSQH K++
Sbjct: 213 VKIEDKDLRIDTYRAGGAGGQHVNKTESAVRIVHLPTGIVVTCQNERSQHQNKEA 267
>gi|304386835|ref|ZP_07369099.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC
13091]
gi|304339089|gb|EFM05179.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC
13091]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|296113010|ref|YP_003626948.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
gi|416156064|ref|ZP_11604303.1| peptide chain release factor 1 [Moraxella catarrhalis 101P30B1]
gi|416217640|ref|ZP_11624373.1| peptide chain release factor 1 [Moraxella catarrhalis 7169]
gi|416230455|ref|ZP_11628421.1| peptide chain release factor 1 [Moraxella catarrhalis 46P47B1]
gi|416235687|ref|ZP_11630287.1| peptide chain release factor 1 [Moraxella catarrhalis 12P80B1]
gi|416240552|ref|ZP_11632523.1| peptide chain release factor 1 [Moraxella catarrhalis BC1]
gi|416246745|ref|ZP_11635203.1| peptide chain release factor 1 [Moraxella catarrhalis BC8]
gi|416251199|ref|ZP_11637607.1| peptide chain release factor 1 [Moraxella catarrhalis CO72]
gi|416254756|ref|ZP_11638858.1| peptide chain release factor 1 [Moraxella catarrhalis O35E]
gi|421779840|ref|ZP_16216330.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
gi|295920704|gb|ADG61055.1| peptide chain release factor 1 [Moraxella catarrhalis BBH18]
gi|326560389|gb|EGE10771.1| peptide chain release factor 1 [Moraxella catarrhalis 7169]
gi|326561241|gb|EGE11604.1| peptide chain release factor 1 [Moraxella catarrhalis 46P47B1]
gi|326564062|gb|EGE14306.1| peptide chain release factor 1 [Moraxella catarrhalis 12P80B1]
gi|326565872|gb|EGE16034.1| peptide chain release factor 1 [Moraxella catarrhalis BC1]
gi|326570557|gb|EGE20597.1| peptide chain release factor 1 [Moraxella catarrhalis BC8]
gi|326573200|gb|EGE23169.1| peptide chain release factor 1 [Moraxella catarrhalis CO72]
gi|326576112|gb|EGE26028.1| peptide chain release factor 1 [Moraxella catarrhalis 101P30B1]
gi|326577062|gb|EGE26956.1| peptide chain release factor 1 [Moraxella catarrhalis O35E]
gi|407812634|gb|EKF83418.1| peptide chain release factor 1 [Moraxella catarrhalis RH4]
Length = 359
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKR 153
NK+ R+L +SE+ T ++ ++ + +E D +M +MA +E+ +A +
Sbjct: 32 NKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELLSDPEMKEMALDEIEVARANIET 91
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MY++Y+Q +GW+ EV+
Sbjct: 92 LEERLNVMMLPKDPNDKATAFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E + GYKE A +SG+GVYG+LKFESG HRVQRVP TE GRVHTSA +VA++P+ E
Sbjct: 152 NEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAVMPEV-E 210
Query: 274 VD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+D V + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ Q ERSQH K+
Sbjct: 211 IDDTVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVAECQQERSQHANKE 268
>gi|302186444|ref|ZP_07263117.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae
642]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVALYAQLLRVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGESVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|118602715|ref|YP_903930.1| peptide chain release factor 1 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|166223599|sp|A1AX02.1|RF1_RUTMC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118567654|gb|ABL02459.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 363
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 144/198 (72%), Gaps = 7/198 (3%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLL---KSLLPKDDADERDCILEVRAGTGGEEASL 188
+D D+ MA EE+ +D +K+L L L KSLLPKD D R+ I+E+RAGTGG EAS+
Sbjct: 72 DDMDIKAMAKEEM---LDVKKKLDHLYLELKKSLLPKDPNDSRNIIIEIRAGTGGNEASI 128
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F+ ++FKMY RY++KK W+ EV+ + + G+KE A ISGVGVY KLKFESG HRVQR
Sbjct: 129 FSSNLFKMYSRYTEKKKWQIEVISSSLGEHGGFKEIIARISGVGVYSKLKFESGAHRVQR 188
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GRVHTSA ++AI+P+ + + +V + D+R+DT+R+ G+GGQH N TNSAVR+
Sbjct: 189 VPETESQGRVHTSACTIAIMPEVENIEEVNINMSDVRVDTFRASGAGGQHVNKTNSAVRI 248
Query: 308 THIPTGMTISIQDERSQH 325
THIPTG QD RSQH
Sbjct: 249 THIPTGTVAECQDGRSQH 266
>gi|416195568|ref|ZP_11617807.1| peptide chain release factor 1 [Neisseria meningitidis CU385]
gi|416212282|ref|ZP_11621849.1| peptide chain release factor 1 [Neisseria meningitidis M01-240013]
gi|427827316|ref|ZP_18994356.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|316984833|gb|EFV63790.1| peptide chain release factor 1 [Neisseria meningitidis H44/76]
gi|325140851|gb|EGC63361.1| peptide chain release factor 1 [Neisseria meningitidis CU385]
gi|325144920|gb|EGC67204.1| peptide chain release factor 1 [Neisseria meningitidis M01-240013]
Length = 385
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 48 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 103
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 104 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 163
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 164 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 223
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 224 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 283
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 284 CQDGRSQHANK 294
>gi|421617613|ref|ZP_16058600.1| peptide chain release factor 1 [Pseudomonas stutzeri KOS6]
gi|409780393|gb|EKN60024.1| peptide chain release factor 1 [Pseudomonas stutzeri KOS6]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q++++G ++L+ + D DM +MA EE+ + + L++ L + LLPKD D R+ LE
Sbjct: 59 QQDLEGAQALLKDS--DPDMREMAEEEVAEGKAQLETLEANLQRMLLPKDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++FA D+F+MY RY++K+GW+ E++ +E + GYKE + + G VY K
Sbjct: 117 IRAGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE V + +LRIDTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPAELRIDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|163850388|ref|YP_001638431.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218528948|ref|YP_002419764.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240137464|ref|YP_002961935.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254559642|ref|YP_003066737.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|418059797|ref|ZP_12697735.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
gi|226739112|sp|A9W1A4.1|RF1_METEP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790888|sp|B7L246.1|RF1_METC4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163661993|gb|ABY29360.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218521251|gb|ACK81836.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240007432|gb|ACS38658.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254266920|emb|CAX22719.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|373566681|gb|EHP92672.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
Length = 361
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 158/229 (68%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++EL +L + I R + + G++++I E D +M +A EE A + ++
Sbjct: 37 SRELSELDGVVAAIHHYRLAEANLAGIRAMIDEPGGDPEMRALAAEEKPEAEEALEQAHR 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD ADE+ ILE+RAGTGG+EA+LFA D+F+MY RY++ KGW+ EV+ +E
Sbjct: 97 ALQLILLPKDAADEKSAILEIRAGTGGDEAALFAGDLFRMYARYAESKGWRVEVISESEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
GY+E A + G V+ +LKFESG HRVQRVP TE GR+HTSA +VA+LP+A+EVD+
Sbjct: 157 TAGGYREVVAEVKGRSVFSRLKFESGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDI 216
Query: 277 RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ DL+IDT R+ G+GGQH N T SA+R+THIPTG+ + +Q+ERSQH
Sbjct: 217 VVNEADLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQH 265
>gi|365107372|ref|ZP_09335706.1| peptide chain release factor 1 [Citrobacter freundii 4_7_47CFAA]
gi|363641481|gb|EHL80873.1| peptide chain release factor 1 [Citrobacter freundii 4_7_47CFAA]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKCE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQHLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+E + G+KE A I+G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ASEGEHGGFKEVIAKINGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 DAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|163783081|ref|ZP_02178076.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881761|gb|EDP75270.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
Length = 361
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 179/275 (65%), Gaps = 8/275 (2%)
Query: 56 MLSNDLIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISEL 113
ML +LI +E+ +R +E +++PE Y + ++E ++L + E
Sbjct: 1 MLKKELIDKLEKLTEKYKR----IEEELSKPEVIQDVKRYRELSREHKELAELYETYQEY 56
Query: 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDC 173
+ Q+E++ K L+ S +K++ ++A EE+ L+ L L+PKD D ++
Sbjct: 57 KRLQRELNEAKELL--KSPEKELKELAQEEIEDIQSRIPELEEKLKLLLVPKDPNDSKNV 114
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
ILE+RAGTGGEEA+LF D+ +MY++Y++ KGWKF ++ ++ L GYKE A I G G
Sbjct: 115 ILEIRAGTGGEEAALFVADLLRMYQKYAEDKGWKFSILNANKTGLGGYKEVIALIEGEGA 174
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
Y +LK+ESG+HRVQR+P+TE GR+HTS +VA+LP+ADE DV + +DL+I+T+R+ G+
Sbjct: 175 YSRLKYESGVHRVQRIPVTESGGRIHTSTATVAVLPEADEADVEINPQDLKIETFRASGA 234
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
GGQ+ NTT +AVR+TH PTG+ +S QDERSQ K
Sbjct: 235 GGQYVNTTETAVRITHTPTGIVVSCQDERSQFQNK 269
>gi|372209265|ref|ZP_09497067.1| peptide chain release factor 1 [Flavobacteriaceae bacterium S85]
Length = 359
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 174/272 (63%), Gaps = 10/272 (3%)
Query: 60 DLIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQ 117
D IKI++QR + +L+ QP+ Y+K NKE + L + +E +
Sbjct: 3 DKIKIVKQRFDEVS-------DLIIQPDVIMDQKRYAKLNKEFKDLNKVVKKGTEYESLL 55
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
I+ K +I + S D +M++MA E+ A ++ +L+ + L+PKD D ++ I+E+
Sbjct: 56 ANIEEAKEIIADGS-DAEMVEMAKMEMEEANEKLPQLEEEIKFMLIPKDPEDAKNVIVEI 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EAS+FA D+++MY +Y+ +GWK EV + E G+KE +++G VYG L
Sbjct: 115 RAGTGGDEASIFAGDLYRMYTKYASTRGWKTEVEDIAEGTSGGFKEVIFSVTGEDVYGDL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE GRVHTSA +V +LP+A+E DV + N D+R+D + S G GGQ
Sbjct: 175 KFESGVHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVEINNADVRVDYFCSSGPGGQS 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT SAVR+THIPTG+ QD++SQH KD
Sbjct: 235 VNTTYSAVRLTHIPTGIVAQCQDQKSQHKNKD 266
>gi|254362308|ref|ZP_04978420.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213]
gi|452745893|ref|ZP_21945725.1| peptide chain release factor 1 [Mannheimia haemolytica serotype 6
str. H23]
gi|153093888|gb|EDN74816.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213]
gi|452086032|gb|EME02423.1| peptide chain release factor 1 [Mannheimia haemolytica serotype 6
str. H23]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|16273461|ref|NP_439710.1| peptide chain release factor 1 [Haemophilus influenzae Rd KW20]
gi|145631803|ref|ZP_01787563.1| peptide chain release factor 1 [Haemophilus influenzae R3021]
gi|145637543|ref|ZP_01793200.1| peptide chain release factor 1 [Haemophilus influenzae PittHH]
gi|145642039|ref|ZP_01797610.1| peptide chain release factor 1 [Haemophilus influenzae R3021]
gi|148826083|ref|YP_001290836.1| peptide chain release factor 1 [Haemophilus influenzae PittEE]
gi|229844233|ref|ZP_04464374.1| peptide chain release factor 1 [Haemophilus influenzae 6P18H1]
gi|229847123|ref|ZP_04467228.1| peptide chain release factor 1 [Haemophilus influenzae 7P49H1]
gi|260580342|ref|ZP_05848171.1| peptide chain release factor 1 [Haemophilus influenzae RdAW]
gi|260583304|ref|ZP_05851079.1| peptide chain release factor 1 [Haemophilus influenzae NT127]
gi|319897179|ref|YP_004135374.1| peptide chain release factor rf-1 [Haemophilus influenzae F3031]
gi|342904362|ref|ZP_08726163.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21621]
gi|373467385|ref|ZP_09558684.1| peptide chain release factor 1 [Haemophilus sp. oral taxon 851 str.
F0397]
gi|378697782|ref|YP_005179740.1| peptide chain release factor RF-1 [Haemophilus influenzae 10810]
gi|1574404|gb|AAC23209.1| peptide chain release factor 1 (prfA) [Haemophilus influenzae Rd
KW20]
gi|144982593|gb|EDJ90143.1| peptide chain release factor 1 [Haemophilus influenzae R3021]
gi|145269229|gb|EDK09175.1| peptide chain release factor 1 [Haemophilus influenzae PittHH]
gi|145273219|gb|EDK13094.1| peptide chain release factor 1 [Haemophilus influenzae 22.4-21]
gi|148716243|gb|ABQ98453.1| peptide chain release factor 1 [Haemophilus influenzae PittEE]
gi|229809952|gb|EEP45673.1| peptide chain release factor 1 [Haemophilus influenzae 7P49H1]
gi|229813227|gb|EEP48915.1| peptide chain release factor 1 [Haemophilus influenzae 6P18H1]
gi|260093019|gb|EEW76953.1| peptide chain release factor 1 [Haemophilus influenzae RdAW]
gi|260093664|gb|EEW77577.1| peptide chain release factor 1 [Haemophilus influenzae NT127]
gi|301170298|emb|CBW29904.1| peptide chain release factor RF-1 [Haemophilus influenzae 10810]
gi|317432683|emb|CBY81046.1| peptide chain release factor RF-1 [Haemophilus influenzae F3031]
gi|341953602|gb|EGT80106.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21621]
gi|371758920|gb|EHO47676.1| peptide chain release factor 1 [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 361
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|352102003|ref|ZP_08959050.1| peptide chain release factor 1 [Halomonas sp. HAL1]
gi|350600174|gb|EHA16244.1| peptide chain release factor 1 [Halomonas sp. HAL1]
Length = 362
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 170/269 (63%), Gaps = 11/269 (4%)
Query: 63 KIMEQRVLAIERRSACLENLVNQPEASPAE-----YSKANKELRKLRDSMHLISELRTKQ 117
+ + QR+ + R L L++ PE + YS+ EL +L + ++ T
Sbjct: 3 ETLRQRLDSFTERFEELAMLLSDPEVINNQQRFRDYSREYSELEELVAAWQRYRDIETNM 62
Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
E + L D DM ++A EL + + L L + L+PKD D R LEV
Sbjct: 63 HEAEQLSR-----DSDADMRELAEMELSEGRERLEELDIELKRLLVPKDPDDGRGVFLEV 117
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA++FA D+F+MY RY++K+GW+ E+V + + GYKE + + G GVY +L
Sbjct: 118 RAGTGGDEAAIFAGDLFRMYSRYAEKRGWRVEIVSASHGEQGGYKEIISRVKGDGVYAQL 177
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQ 296
KFESG HRVQRVP TE GR+HTSA +VA++P+ D+V D+ + + DLR+DTYRS G+GGQ
Sbjct: 178 KFESGAHRVQRVPATESQGRIHTSACTVAVMPEVDDVGDIDINSADLRVDTYRSSGAGGQ 237
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H NTT+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 238 HVNTTDSAIRITHLPTGVVVECQEERSQH 266
>gi|340789095|ref|YP_004754560.1| peptide chain release factor 1 [Collimonas fungivorans Ter331]
gi|340554362|gb|AEK63737.1| Peptide chain release factor 1 [Collimonas fungivorans Ter331]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/203 (53%), Positives = 145/203 (71%), Gaps = 1/203 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM + A +E+ A ++LQ L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 EMQSDPDMKEFAQDEIVAAKARMEQLQGDLQKMLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY R++++ W+ E+V + S++ GYKE + G G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYTRFAERNRWQVEMVSESSSEVGGYKEVIVRVIGFGAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VAI+P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAIMPEADEVGDVDINPADIRIDTYRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVKDS 330
TH+PTG+ + QD+RSQH K S
Sbjct: 247 THMPTGIVVECQDDRSQHKNKAS 269
>gi|156973549|ref|YP_001444456.1| peptide chain release factor 1 [Vibrio harveyi ATCC BAA-1116]
gi|166223617|sp|A7MY68.1|RF1_VIBHB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|156525143|gb|ABU70229.1| hypothetical protein VIBHAR_01250 [Vibrio harveyi ATCC BAA-1116]
Length = 362
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 168/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|389580733|ref|ZP_10170760.1| peptide chain release factor 1 [Desulfobacter postgatei 2ac9]
gi|389402368|gb|EIM64590.1| peptide chain release factor 1 [Desulfobacter postgatei 2ac9]
Length = 353
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 168/266 (63%), Gaps = 4/266 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M Q++ IE R +E+L++ P A +Y KE +L + + E + E+
Sbjct: 1 MIQKLKGIEERFIKIEHLLSDPAVMADQKKYQGYLKEHGELNKIVPVFREYEGAEGELKE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K L+ + D D+ MA EE+ + +L L L+PKD DE++ ILE+RAGTG
Sbjct: 61 AKELLKDS--DPDIRAMAKEEIPVLESRISQLHEQLNILLMPKDPRDEKNVILEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA +F D+F+MY RY + K WK E++ +S G+KE + + G G Y + K+ESG
Sbjct: 119 GEEAGIFTGDLFRMYSRYVESKHWKIEIIEKNDSAAGGFKEVVSMVQGKGAYSQFKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
IHRVQRVP TE GRVHTSAV+VA+LP+A++VD+ + DL++D +RS G GGQ NTT+
Sbjct: 179 IHRVQRVPETETQGRVHTSAVTVAVLPEAEDVDIDINPADLKVDVFRSSGPGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVK 328
SAVR+THIPTG+ + QDE+SQH K
Sbjct: 239 SAVRITHIPTGVVATCQDEKSQHKNK 264
>gi|333376032|ref|ZP_08467826.1| peptide chain release factor RF1 [Kingella kingae ATCC 23330]
gi|332969013|gb|EGK08053.1| peptide chain release factor RF1 [Kingella kingae ATCC 23330]
Length = 375
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 166/250 (66%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y K N+E +L + + R + ++ + ++ D DM +
Sbjct: 39 LLGSPEATANMDTYRKLNQEHAELTPIVETYQQYRQAESDLTDAQEML----SDPDMKEF 94
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ + ++L L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 95 AAEEIEATKIKIEQLDFELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSR 154
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
++++ W+ E+V +ESDL GYKE + G+G Y KLKFESG HRVQRVP TE GR+H
Sbjct: 155 FAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLKFESGGHRVQRVPATESQGRIH 214
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L DLRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 215 TSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 274
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 275 QDGRSQHANK 284
>gi|149925825|ref|ZP_01914089.1| peptide chain release factor 1 [Limnobacter sp. MED105]
gi|149825942|gb|EDM85150.1| peptide chain release factor 1 [Limnobacter sp. MED105]
Length = 360
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 174/267 (65%), Gaps = 7/267 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M R+ + R A LE ++ A+ A++ +E +L + +E + + +++
Sbjct: 5 MRNRLTRLAERLADLEEFLSSQNAANDMAQFKAITRERSELLPATERFAEYLSIEADLNT 64
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ E D DM DMA EE+ + +L++ L + LLPKD D R+ +LE+RAGTG
Sbjct: 65 AQ----EWLSDPDMRDMAREEIAQNEAKLAQLEADLQRLLLPKDPNDHRNAMLEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+F+MY RY++++GW+ EV+ +ES+L GYKE ++G VY LKFESG
Sbjct: 121 GDESALFAGDLFRMYTRYAERQGWQIEVMSASESELGGYKEVIIRLAGDHVYKHLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA++ + DE +V + DLRIDTYR+ G+GGQH N T
Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMAEPDEAEVIEINPADLRIDTYRASGAGGQHINKT 240
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SAVR+TH+PTG+ + QDERSQH K
Sbjct: 241 DSAVRITHLPTGLVVECQDERSQHKNK 267
>gi|406892087|gb|EKD37534.1| hypothetical protein ACD_75C01095G0003 [uncultured bacterium]
Length = 356
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 173/266 (65%), Gaps = 8/266 (3%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKE---LRKLRDSMHLISELRTKQKE 119
M + +E + + LE ++ P EY K +E L KL D E + Q+E
Sbjct: 1 MFDKFADLEDKISHLEGRLSDPALVGDQKEYQKVVREHSHLVKLNDKY---LEYKKVQQE 57
Query: 120 IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRA 179
I K+++++ +ED ++ ++A EL + +EK L + LLPKD D+++ LE+RA
Sbjct: 58 ISENKAILFDENEDLELKELAKAELEELVAKEKTLDQEMKVILLPKDPNDDKNIFLEIRA 117
Query: 180 GTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239
GTGG+EA+LFA D+F+MY R+++ GW+ EV+ G+KE A ISG VY KLK+
Sbjct: 118 GTGGDEAALFAGDLFRMYSRFAESMGWRVEVMSSNPLGTGGFKEIIALISGEQVYSKLKY 177
Query: 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHAN 299
ESG+HRVQRVP TE GR+HTSAV+VAILP+ DEV++ + +L+ D +RS G GGQ N
Sbjct: 178 ESGVHRVQRVPETETQGRIHTSAVTVAILPEVDEVELNIDMNELKFDVFRSSGPGGQSVN 237
Query: 300 TTNSAVRVTHIPTGMTISIQDERSQH 325
TT+SAVRVTH+PTG+ ++ QDE+SQH
Sbjct: 238 TTDSAVRVTHLPTGLVVTCQDEKSQH 263
>gi|416242626|ref|ZP_11633662.1| peptide chain release factor 1 [Moraxella catarrhalis BC7]
gi|326571210|gb|EGE21234.1| peptide chain release factor 1 [Moraxella catarrhalis BC7]
Length = 359
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 163/238 (68%), Gaps = 6/238 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKR 153
NK+ R+L +SE+ T ++ ++ + +E D +M +MA +E+ +A +
Sbjct: 32 NKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELLSDPEMKEMALDEIEVARANIET 91
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ L +LPKD D+ LE+RAGTGG+EA++F+ D+F+MY++Y+Q +GW+ EV+
Sbjct: 92 LEERLNVMMLPKDPNDKATAFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSA 151
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E + GYKE A +SG+GVYG+LKFESG HRVQRVP TE GRVHTSA +VA++P+ E
Sbjct: 152 NEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTVAVMPEV-E 210
Query: 274 VD--VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+D V + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ Q ERSQH K+
Sbjct: 211 IDDTVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGVVAECQQERSQHANKE 268
>gi|61252075|sp|P43917.2|RF1_HAEIN RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 360
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 38 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 94 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 267
>gi|261493250|ref|ZP_05989777.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261496507|ref|ZP_05992887.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261307710|gb|EEY09033.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261311100|gb|EEY12276.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|301094068|ref|XP_002997878.1| peptide chain release factor 1 [Phytophthora infestans T30-4]
gi|262109801|gb|EEY67853.1| peptide chain release factor 1 [Phytophthora infestans T30-4]
Length = 366
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 171/235 (72%), Gaps = 7/235 (2%)
Query: 99 ELRKLRDSMHLISELRTKQKEIDGLKSLIYEC--SEDKDMLD---MATEELCLAIDEEKR 153
E+ +L + + EL++++K ++ L +I E S++ D L+ MA EE ++
Sbjct: 41 EMAELEPKVIAVRELQSQEKAVEELDEMINEQADSDEPDALELRHMAEEERRELLEAIIN 100
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ +++ +LP+D+AD++ ILE+RAG+GG+EA LFA D+ KMY++ + KGWKFE++ +
Sbjct: 101 LEGEVVRLMLPRDEADDKSSILEIRAGSGGDEACLFAGDILKMYQKVALAKGWKFELMSI 160
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+DL G KE +++G G YG++KFESG+HRVQRVP+ + RVHTSAVSV +LP+A+E
Sbjct: 161 SETDLGGVKECVCSLTGRGAYGRMKFESGVHRVQRVPVNDV--RVHTSAVSVVVLPEAEE 218
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
V+V + +DLRID YR+ G+GGQH NTT SAVR+THIPTG+ ++QDERSQH K
Sbjct: 219 VEVEIDPKDLRIDVYRASGAGGQHVNTTESAVRITHIPTGIVAAVQDERSQHQNK 273
>gi|345859347|ref|ZP_08811697.1| peptide chain release factor 1 [Desulfosporosinus sp. OT]
gi|344327494|gb|EGW38922.1| peptide chain release factor 1 [Desulfosporosinus sp. OT]
Length = 356
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/267 (45%), Positives = 175/267 (65%), Gaps = 13/267 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M +++ IER+ L L++ PE A+ +E+ K K + + + E + + I+
Sbjct: 1 MLEKLYEIERKYDELTELLSDPEILANQSEWQKYAKAQAGMTNLITAFREYQAVLRGIED 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS-----LLPKDDADERDCILEV 177
++L+ E D DM +MA +EL +E R QSL L+ LLPKD DE++ I+E+
Sbjct: 61 TENLLKE-KLDSDMQEMAEQEL-----DELRSQSLELEEKMRVFLLPKDPNDEKNVIMEI 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAG GG+EA+LFA D++KMY RY++ +GWK EV+ + +D+ GYKE + G G + KL
Sbjct: 115 RAGAGGDEAALFAGDLYKMYTRYAEGQGWKTEVLSASYTDIGGYKEIIFLVEGYGAFSKL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQR+P TE GR+HTS +VA+LP+A+EV+V + DLRID + S G GGQ
Sbjct: 175 KFESGVHRVQRIPSTESGGRIHTSTATVAVLPEAEEVEVSINPNDLRIDIFCSSGPGGQC 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQ 324
NTT SAVR+TH+PTG+ S QDE+SQ
Sbjct: 235 VNTTQSAVRITHLPTGIIASCQDEKSQ 261
>gi|167838055|ref|ZP_02464914.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
gi|424907173|ref|ZP_18330664.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
gi|390927530|gb|EIP84939.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEDELRGARDRMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
THIPTG+ + QD+RSQH KD
Sbjct: 247 THIPTGIVVECQDDRSQHKNKD 268
>gi|291617195|ref|YP_003519937.1| PrfA [Pantoea ananatis LMG 20103]
gi|378767534|ref|YP_005196002.1| peptide chain release factor 1 [Pantoea ananatis LMG 5342]
gi|386015587|ref|YP_005933868.1| peptide chain release factor 1 PrfA [Pantoea ananatis AJ13355]
gi|386079669|ref|YP_005993194.1| peptide chain release factor 1 PrfA [Pantoea ananatis PA13]
gi|291152225|gb|ADD76809.1| PrfA [Pantoea ananatis LMG 20103]
gi|327393650|dbj|BAK11072.1| peptide chain release factor 1 PrfA [Pantoea ananatis AJ13355]
gi|354988850|gb|AER32974.1| peptide chain release factor 1 PrfA [Pantoea ananatis PA13]
gi|365187015|emb|CCF09965.1| peptide chain release factor 1 [Pantoea ananatis LMG 5342]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 160/237 (67%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D + + Q +I+ K L+ +D +M DMA EEL A ++ +
Sbjct: 35 FRALSREYAQLTDVTRCFRDWQQNQDDIETAKMLL----DDPEMRDMAQEELLEAREKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLPKD DERDC +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V
Sbjct: 91 SLEQQLQLLLLPKDPDDERDCFVEVRAGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G G YG+ KFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEVIARVMGEGAYGRFKFESGGHRVQRVPETESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPEINPSDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|420416248|ref|ZP_14915359.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
gi|393037694|gb|EJB38729.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
Length = 352
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|66044202|ref|YP_234043.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae
B728a]
gi|422675092|ref|ZP_16734440.1| peptide chain release factor 1 [Pseudomonas syringae pv. aceris
str. M302273]
gi|440744588|ref|ZP_20923891.1| peptide chain release factor 1 [Pseudomonas syringae BRIP39023]
gi|75503325|sp|Q4ZXW7.1|RF1_PSEU2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|63254909|gb|AAY36005.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
syringae pv. syringae B728a]
gi|330972814|gb|EGH72880.1| peptide chain release factor 1 [Pseudomonas syringae pv. aceris
str. M302273]
gi|440374006|gb|ELQ10749.1| peptide chain release factor 1 [Pseudomonas syringae BRIP39023]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVALYAQLLRVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|365540924|ref|ZP_09366099.1| peptide chain release factor 1 [Vibrio ordalii ATCC 33509]
Length = 362
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 142/198 (71%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
ED +M +MA EE+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA
Sbjct: 72 EDAEMREMAQEEIKAAKATIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY++K W+ E++ + ++ GYKE A +SG G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSRYAEKMSWRIEIMSASYAEHGGYKEVIAKVSGDGAYGVLKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VAI+P+ E ++ ++ DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAIMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG + QDERSQH K
Sbjct: 252 PTGTVVECQDERSQHKNK 269
>gi|417842059|ref|ZP_12488154.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19501]
gi|341947839|gb|EGT74480.1| Peptide chain release factor 1 [Haemophilus haemolyticus M19501]
Length = 361
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|322832986|ref|YP_004213013.1| peptide chain release factor 1 [Rahnella sp. Y9602]
gi|384258166|ref|YP_005402100.1| peptide chain release factor 1 [Rahnella aquatilis HX2]
gi|321168187|gb|ADW73886.1| peptide chain release factor 1 [Rahnella sp. Y9602]
gi|380754142|gb|AFE58533.1| peptide chain release factor 1 [Rahnella aquatilis HX2]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/202 (55%), Positives = 149/202 (73%), Gaps = 9/202 (4%)
Query: 132 EDKDMLDMATEEL--CLA-IDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEAS 187
+D +M +MA +E+ C A I+E E++LQ LLL PKD DER C LE+RAGTGG+EA+
Sbjct: 70 DDPEMREMAQDEIKECKANIEELEEKLQVLLL----PKDPDDERGCFLEIRAGTGGDEAA 125
Query: 188 LFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQ 247
+FA D+F+MY RY++ + W+ E+V +E + GYKE A ISG G YG+ KFESG HRVQ
Sbjct: 126 IFAGDLFRMYSRYAEMRRWRVEIVSASEGEHGGYKEVIAKISGEGAYGQFKFESGGHRVQ 185
Query: 248 RVPLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
RVP TE GR+HTSA +VA++P+ E ++ + DLRIDT+RS G+GGQH NTT+SA+R
Sbjct: 186 RVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLRIDTFRSSGAGGQHVNTTDSAIR 245
Query: 307 VTHIPTGMTISIQDERSQHMVK 328
+THIPTG+ + QDERSQH K
Sbjct: 246 ITHIPTGIVVECQDERSQHKNK 267
>gi|410584301|ref|ZP_11321406.1| peptide chain release factor 1 [Thermaerobacter subterraneus DSM
13965]
gi|410505163|gb|EKP94673.1| peptide chain release factor 1 [Thermaerobacter subterraneus DSM
13965]
Length = 389
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 100/176 (56%), Positives = 138/176 (78%)
Query: 150 EEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFE 209
E + L+ L LLP+D D+RD I+E+RAGTGGEEA+LFA D+F+MY+RY++++GW+ E
Sbjct: 120 ERQALERALRGLLLPRDPRDQRDVIMEIRAGTGGEEAALFAGDLFRMYQRYAERQGWRTE 179
Query: 210 VVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILP 269
++ TESDL G+KE A+SG G + +LK ESG+HRVQRVP+TE GR+HTS +VA+LP
Sbjct: 180 IMAATESDLGGFKEIIFAVSGRGAFSRLKHESGVHRVQRVPVTEAGGRIHTSTATVAVLP 239
Query: 270 QADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+A+EV+V++ +DL IDT+ + G GGQH N T SAVR+TH PTG+ ++ QDERSQH
Sbjct: 240 EAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAVRITHKPTGIVVTCQDERSQH 295
>gi|70725918|ref|YP_252832.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
gi|119361616|sp|Q4L7Z9.1|RF1_STAHJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68446642|dbj|BAE04226.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
Length = 358
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 179/259 (69%), Gaps = 12/259 (4%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ PE + K +KE L+ ++ + + ++K++EI + ++ E
Sbjct: 8 VEERYEQLNEMLSDPEIVNDSDKLRKYSKEQADLQKTVDVYRDYKSKKEEIAEIDEMLNE 67
Query: 130 CSEDKDMLDMATEE---LCLAIDE-EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
+EDK+ ++M EE L AI E E++L+ LL+ PKD DE+D I+E+RA GG+E
Sbjct: 68 -TEDKEEIEMLKEESASLKSAIPELEEQLKFLLI----PKDPNDEKDVIVEIRAAAGGDE 122
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A++FA D+ +MY +Y++ + +K E+V ESD GYKE S ++SG G Y KLKFE+G HR
Sbjct: 123 AAIFAGDLLRMYSKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAHR 182
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 306 RVTHIPTGMTISIQDERSQ 324
R+TH+PTG+ I+ E+SQ
Sbjct: 243 RITHLPTGV-IATSSEKSQ 260
>gi|378579405|ref|ZP_09828072.1| peptide chain release factor RF-1 [Pantoea stewartii subsp.
stewartii DC283]
gi|377817879|gb|EHU00968.1| peptide chain release factor RF-1 [Pantoea stewartii subsp.
stewartii DC283]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 159/233 (68%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D + + Q +I+ K L+ +D +M DMA EEL A ++ L+
Sbjct: 39 SREYAQLTDVTRCFRDWQQNQDDIETAKMLL----DDPEMRDMAQEELQAAREKTDALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERDC +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E+V +
Sbjct: 95 QLQLLLLPKDPDDERDCFVEVRAGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVSANDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A I G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIARIMGDGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PEINPSDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|429212753|ref|ZP_19203918.1| peptide chain release factor 1 [Pseudomonas sp. M1]
gi|428157235|gb|EKX03783.1| peptide chain release factor 1 [Pseudomonas sp. M1]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + + R Q +++G ++L+ + D D+ +MA EE+ A L+
Sbjct: 39 SREFAEVEPVILAFRDFRKTQADLEGAQALLKDS--DPDLREMAEEEVASAKACLAELED 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ EV+ E
Sbjct: 97 ALQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERQGWRVEVLSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VD 275
+ GYKE A + G VY KLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDNVYAKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQAA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SAVR+THIP+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQH 266
>gi|218768706|ref|YP_002343218.1| peptide chain release factor 1 [Neisseria meningitidis Z2491]
gi|421559739|ref|ZP_16005608.1| peptide chain release factor 1 [Neisseria meningitidis 92045]
gi|20139350|sp|Q9JT75.1|RF1_NEIMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|121052714|emb|CAM09057.1| peptide chain release factor I [Neisseria meningitidis Z2491]
gi|402334738|gb|EJU70017.1| peptide chain release factor 1 [Neisseria meningitidis 92045]
Length = 358
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|387813305|ref|YP_005428787.1| peptide chain release factor RF-1 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338317|emb|CCG94364.1| peptide chain release factor RF-1 [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 363
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A+ ++ ++E ++ + R ++ID L + D DM +MA EEL A
Sbjct: 30 ANQDKFRDLSREFAEIEPVVKCFQAWRQSLEDIDAATELAKDG--DADMREMAEEELASA 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L L + +LPKD D ++ LE+RAGTGG+EA++FA D+F+MY RY++K+ W+
Sbjct: 88 RARSEELDEELQRLMLPKDPNDTKNVFLEIRAGTGGDEAAIFAGDLFRMYSRYAEKRRWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
EV+ E + G+KE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+
Sbjct: 148 VEVLSENEGEHGGFKEIIARLSGDGVYGTLKFESGAHRVQRVPETESQGRIHTSACTVAV 207
Query: 268 LPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+P+ADE + V + DLR+DT+RS G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 208 MPEADEAEAVEINKADLRVDTFRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|354597469|ref|ZP_09015486.1| Peptide chain release factor 1 [Brenneria sp. EniD312]
gi|353675404|gb|EHD21437.1| Peptide chain release factor 1 [Brenneria sp. EniD312]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 172/261 (65%), Gaps = 7/261 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A++ R ++ L+ +P A + ++E +L D + R Q++I + ++
Sbjct: 11 ALQERHEEVQALLGEPNVIADMDRFRALSREYAQLTDITRCFQKWRQVQEDIQTAEMML- 69
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D +M +MA EEL A + L+ L LLPKD DER C LEVRAGTGG+EA++
Sbjct: 70 ---DDAEMREMAQEELKQAKLTGEELEQQLQLLLLPKDPDDERGCFLEVRAGTGGDEAAI 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++ + W+ EV+ ++ + GYKE A ISG GVYG+LKFESG HRVQR
Sbjct: 127 FAGDLFRMYSRYAETRRWRVEVISASDGEHGGYKEIIAKISGDGVYGQLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ E ++ + DLRIDT+RS G+GGQH NTT+SA+R+
Sbjct: 187 VPATESQGRIHTSACTVAVMPEVPEAELPEISPADLRIDTFRSSGAGGQHVNTTDSAIRI 246
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QDERSQH K
Sbjct: 247 THLPTGIVVECQDERSQHKNK 267
>gi|329904245|ref|ZP_08273720.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium
IMCC9480]
gi|327548069|gb|EGF32798.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium
IMCC9480]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 5/239 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K +E +L + L R + +I + ++ D DM D A EE+ A +
Sbjct: 35 YRKLTREHAELGPLVELYDSFRVAEADI----ATAHDMLADPDMKDFAQEEILAARARTE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++++ L LLPKD DER+ LE+RAGTGG+E++LFA D+ +MY RY+++ W+ E+V
Sbjct: 91 QIEADLQTMLLPKDPNDERNLFLEIRAGTGGDESALFAGDLLRMYTRYAERNRWQVEMVS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ SD+ GYKE + G G Y +LKFESG HRVQRVP TE GR+HTSA +VA++P+ D
Sbjct: 151 ESSSDVGGYKEVIVRVIGNGAYSRLKFESGGHRVQRVPTTETQGRIHTSACTVAVMPEVD 210
Query: 273 EV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS 330
E+ DV + DLRIDTYR+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH K S
Sbjct: 211 EISDVDINPSDLRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAS 269
>gi|126209498|ref|YP_001054723.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126098290|gb|ABN75118.1| Peptide chain release factor 1 (RF-1) [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 333
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 43 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 102
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 103 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 162
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 163 TESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSAVRITHI 222
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 223 PTGIVVECQDERSQHKNK 240
>gi|120555272|ref|YP_959623.1| peptide chain release factor 1 [Marinobacter aquaeolei VT8]
gi|166223568|sp|A1U367.1|RF1_MARAV RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120325121|gb|ABM19436.1| bacterial peptide chain release factor 1 (bRF-1) [Marinobacter
aquaeolei VT8]
Length = 363
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A+ ++ ++E ++ + R ++ID L + D DM +MA EEL A
Sbjct: 30 ANQDKFRDLSREFAEIEPVVKCFQAWRQSLEDIDAATELAKDG--DADMREMAEEELASA 87
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
+ L L + +LPKD D ++ LE+RAGTGG+EA++FA D+F+MY RY++K+ W+
Sbjct: 88 RARSEELDEELQRLMLPKDPNDTKNVFLEIRAGTGGDEAAIFAGDLFRMYSRYAEKRRWQ 147
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
EV+ E + G+KE A +SG GVYG LKFESG HRVQRVP TE GR+HTSA +VA+
Sbjct: 148 VEVLSENEGEHGGFKEIIARLSGDGVYGTLKFESGAHRVQRVPETESQGRIHTSACTVAV 207
Query: 268 LPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+P+ADE + V + DLR+DT+RS G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 208 MPEADEAEAVEINKADLRVDTFRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|374849774|dbj|BAL52780.1| peptide chain release factor RF-1 [uncultured Acidobacteria
bacterium]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 165/232 (71%), Gaps = 1/232 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y K K+ R+L + E ++E + ++L+ E + D ++ ++A E+ + +
Sbjct: 33 YVKLLKQQRELEPIIAKYREYERLRREWEDARALLEEET-DGELRELARAEMHALEERLQ 91
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
R + L LLPKD DER+ ILEVRAGTGG EA+LFA D+ +MY RY++++GW+ +++
Sbjct: 92 RCEQELKLLLLPKDPNDERNVILEVRAGTGGAEATLFAADLLRMYTRYAERQGWRVQLLD 151
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+ESD+ G KEA I G G Y +LKFESG+HRVQRVP+TE SGR+HTSA +VA+LP+A+
Sbjct: 152 VSESDIGGVKEAILLIEGRGAYSRLKFESGVHRVQRVPITEASGRIHTSAATVAVLPEAE 211
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
EV+VR+ +DLRIDT+ S G GGQ NTT SAVR+TH+PTG+ ++ QDERSQ
Sbjct: 212 EVEVRIDPKDLRIDTFCSSGHGGQSVNTTYSAVRITHLPTGLVVTCQDERSQ 263
>gi|333996135|ref|YP_004528748.1| peptide chain release factor 1 [Treponema azotonutricium ZAS-9]
gi|333735566|gb|AEF81515.1| peptide chain release factor 1 [Treponema azotonutricium ZAS-9]
Length = 356
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 172/270 (63%), Gaps = 19/270 (7%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124
M +R+ ++ RR L L+ P+ K + R + ++E+ E++GL
Sbjct: 1 MSERLDSMLRRHGELSKLIQDPD-----IVKDQNQYRSIMKEYSQLNEIAEYNGEVEGLA 55
Query: 125 SLIYEC---SEDKDMLDMATEELCLAI-------DEEKRLQSLLLKSLLPKDDADERDCI 174
+ E ++D+ +M D E RL+ LL+ P+D DE++ I
Sbjct: 56 GQLEETRTLAQDEKDPEMKELAKEELKELELKMKDAEDRLKFLLI----PRDPLDEKNII 111
Query: 175 LEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVY 234
+E+RAGTGGEEA+LFA D+F+MY R+++ +GWKFE++ E++L G KE +ISG VY
Sbjct: 112 MEIRAGTGGEEAALFAADLFRMYSRFAETRGWKFEIMNSNETELGGLKEIVFSISGKNVY 171
Query: 235 GKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSG 294
+++ESG+HRVQRVP TE SGR+HTSAV+VA+LP+ADE ++ ++ EDLRID R+GG G
Sbjct: 172 ENMRYESGVHRVQRVPATEASGRIHTSAVTVAVLPEADETEIDIKQEDLRIDVMRAGGPG 231
Query: 295 GQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
GQ NTT+SAVR+THIP+G+ + QDE+SQ
Sbjct: 232 GQCVNTTDSAVRITHIPSGLVVHCQDEKSQ 261
>gi|422648190|ref|ZP_16711314.1| peptide chain release factor 1 [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330961728|gb|EGH61988.1| peptide chain release factor 1 [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 161/230 (70%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L +L Q +++G ++L+ + D DM +MA EE+ ++ L++
Sbjct: 39 SREYAEVEPVVALYKQLLKVQADLEGAQALLKDS--DPDMREMAVEEVRETKEQLVDLEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|322513486|ref|ZP_08066596.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976]
gi|322120705|gb|EFX92589.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|32033818|ref|ZP_00134103.1| COG0216: Protein chain release factor A [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307249197|ref|ZP_07531194.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307260449|ref|ZP_07542144.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306858721|gb|EFM90780.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306869852|gb|EFN01634.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|312131222|ref|YP_003998562.1| peptide chain release factor 1 [Leadbetterella byssophila DSM
17132]
gi|311907768|gb|ADQ18209.1| bacterial peptide chain release factor 1 (bRF-1) [Leadbetterella
byssophila DSM 17132]
Length = 358
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 160/232 (68%), Gaps = 1/232 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ K +KE R L + + + +D K ++ +D++M +MA EL +++
Sbjct: 32 FKKISKEYRDLEKIVQEYNAYKLILAHLDEAKEIL-ATEKDEEMREMAKLELDELSPKKE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+ L + L+PKD D +D ILE+RAGTGG+EAS+FA D+F+MY+R++ ++GW+F V+
Sbjct: 91 EAEERLKELLIPKDPNDSKDSILEIRAGTGGDEASIFAGDLFRMYQRFAAQQGWQFTVMD 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
T++ GYKE ++ G VYGKLK+ESG+HRVQRVP TE GR+HTSA +VA+LP+AD
Sbjct: 151 FTDAPSGGYKEIVVSVKGEDVYGKLKYESGVHRVQRVPATESQGRIHTSAATVAVLPEAD 210
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
EVDV++ D+R DT+ S G+GGQ NTT SAVRVTHIPTG+ + QDERSQ
Sbjct: 211 EVDVQINMNDIRKDTFCSSGAGGQSVNTTYSAVRVTHIPTGLVVQCQDERSQ 262
>gi|422619385|ref|ZP_16688075.1| peptide chain release factor 1 [Pseudomonas syringae pv. japonica
str. M301072]
gi|422631822|ref|ZP_16697002.1| peptide chain release factor 1 [Pseudomonas syringae pv. pisi str.
1704B]
gi|443645394|ref|ZP_21129244.1| Peptide chain release factor 1 [Pseudomonas syringae pv. syringae
B64]
gi|330899755|gb|EGH31174.1| peptide chain release factor 1 [Pseudomonas syringae pv. japonica
str. M301072]
gi|330941684|gb|EGH44459.1| peptide chain release factor 1 [Pseudomonas syringae pv. pisi str.
1704B]
gi|443285411|gb|ELS44416.1| Peptide chain release factor 1 [Pseudomonas syringae pv. syringae
B64]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVTLYAQLLRVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|388603011|ref|ZP_10161407.1| peptide chain release factor 1 [Vibrio campbellii DS40M4]
Length = 362
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 169/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ +E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSSEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|307244800|ref|ZP_07526899.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253754|ref|ZP_07535608.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258211|ref|ZP_07539954.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854245|gb|EFM86451.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863238|gb|EFM95178.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867671|gb|EFM99516.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|440739072|ref|ZP_20918594.1| peptide chain release factor 1 [Pseudomonas fluorescens BRIP34879]
gi|447915107|ref|YP_007395675.1| peptide chain release factor 1 [Pseudomonas poae RE*1-1-14]
gi|440380444|gb|ELQ17011.1| peptide chain release factor 1 [Pseudomonas fluorescens BRIP34879]
gi|445198970|gb|AGE24179.1| peptide chain release factor 1 [Pseudomonas poae RE*1-1-14]
Length = 360
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 153/210 (72%), Gaps = 3/210 (1%)
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
Q +++G ++L+ + D DM +MA EE+ A ++ L+ L + LLP+D D R+ LE
Sbjct: 59 QADLEGAQALLKD--NDPDMREMAVEEVREAKEKLAELEGDLQRMLLPRDPNDGRNVFLE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E + GYKE A + G VYGK
Sbjct: 117 IRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGG 295
LKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE + + + DLR+DTYRS G+GG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQETIEINPADLRVDTYRSSGAGG 236
Query: 296 QHANTTNSAVRVTHIPTGMTISIQDERSQH 325
QH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 237 QHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|110640072|ref|YP_680282.1| peptide chain release factor 1 [Cytophaga hutchinsonii ATCC 33406]
gi|119361529|sp|Q11NS4.1|RF1_CYTH3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110282753|gb|ABG60939.1| bacterial peptide chain release factor 1 (bRF-1) [Cytophaga
hutchinsonii ATCC 33406]
Length = 359
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 156/232 (67%), Gaps = 1/232 (0%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y+ NKE ++L + + ++ + I+ K ++ +D D +MA EEL ++
Sbjct: 31 YASLNKEYKELNKIVEVYAQYKNILDNIESSKKVL-SVEKDPDFREMAKEELETLAVQKD 89
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ ++ + L+PKD D ++ ILE+R GTGG+EAS+FA D+F+MY+RY + GWK E++
Sbjct: 90 DIELVIKELLIPKDPNDSKNIILEIRGGTGGDEASIFAGDIFRMYQRYCDRMGWKMELID 149
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
TE GYKE ISG VYGKLKFESG+HRVQRVP TE GR+HTSA SVA+LP+ +
Sbjct: 150 ATEGTSGGYKEIICGISGEDVYGKLKFESGVHRVQRVPATETQGRIHTSAASVAVLPEVE 209
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
E+DV+L D+R DT+ S G GGQ NTT SA+R+THIP+G + QDE+SQ
Sbjct: 210 ELDVQLNMNDIRKDTFCSSGPGGQSVNTTYSAIRLTHIPSGTVVQCQDEKSQ 261
>gi|407693843|ref|YP_006818632.1| peptide chain release factor 1 [Actinobacillus suis H91-0380]
gi|407389900|gb|AFU20393.1| peptide chain release factor 1 [Actinobacillus suis H91-0380]
Length = 360
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|327399685|ref|YP_004340554.1| peptide chain release factor 1 [Hippea maritima DSM 10411]
gi|327182314|gb|AEA34495.1| Peptide chain release factor 1 [Hippea maritima DSM 10411]
Length = 354
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 129/163 (79%)
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLPKD+AD+RD ILE+RAGTGGEEA+LFA D+F+MY RY++ KG+K EV+ + SD G
Sbjct: 97 LLPKDEADDRDVILEIRAGTGGEEAALFAADLFRMYSRYAENKGFKVEVLSKSLSDTGGI 156
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
KE A I G G Y K ESG HRVQR+P+TE GR+HTSA +VA+LP+A+ VDV ++ E
Sbjct: 157 KEIIAEIKGKGAYHLFKHESGTHRVQRIPITESQGRIHTSAATVAVLPEAENVDVEIKPE 216
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
DLRID +R+ G GGQH NTT+SAVR+TH+PTGM +S QDE+SQ
Sbjct: 217 DLRIDVFRASGHGGQHVNTTDSAVRITHLPTGMVVSCQDEKSQ 259
>gi|91785343|ref|YP_560549.1| peptide chain release factor 1 [Burkholderia xenovorans LB400]
gi|119361518|sp|Q13TU2.1|RF1_BURXL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91689297|gb|ABE32497.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia
xenovorans LB400]
Length = 360
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A + +L + L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEEEIRAARERMDKLGAELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 247 THLPTGIVVECQDDRSQHKNKD 268
>gi|420371628|ref|ZP_14871996.1| peptide chain release factor 1 [Shigella flexneri 1235-66]
gi|391318959|gb|EIQ76039.1| peptide chain release factor 1 [Shigella flexneri 1235-66]
Length = 360
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 163/237 (68%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q +I+ + ++ +D +M +MA +EL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQDDIETAQMML----DDPEMREMAQDELREAKEKCE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLP D DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQHLQVLLLPTDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 ANEGEHGGYKEIIAKVSGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|83747499|ref|ZP_00944537.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Ralstonia
solanacearum UW551]
gi|83725813|gb|EAP72953.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Ralstonia
solanacearum UW551]
Length = 374
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A +EL +A D L++ L + LLPKD D R+ LE+RAGTGG+E++L
Sbjct: 81 ELLADPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIRAGTGGDESAL 140
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V + SDL GYKE A + G G Y +LKFESG HRVQR
Sbjct: 141 FAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFESGGHRVQR 200
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+AD + D+++ DLRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 201 VPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHINKTDSAVRI 260
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 261 THLPTGLVVECQDDRSQHRNKD 282
>gi|349573887|ref|ZP_08885854.1| peptide chain release factor RF1 [Neisseria shayeganii 871]
gi|348014557|gb|EGY53434.1| peptide chain release factor RF1 [Neisseria shayeganii 871]
Length = 369
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 165/250 (66%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L+ PEA+ Y + N+E +L + + R Q ++ + L+ D +M D
Sbjct: 33 LLGSPEATADIDHYRRLNQEHAELTPVVDTYRQYRQAQSDLAAAEELL----ADPEMKDF 88
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY R
Sbjct: 89 AAEEIDDAKAKIDTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYTR 148
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
+++++ W+ E+V ESDL GYKE A I G G Y +LKFESG HRVQRVP TE GR+H
Sbjct: 149 FAERQRWQVEIVSANESDLGGYKEVIARIVGHGAYSQLKFESGGHRVQRVPATESQGRIH 208
Query: 260 TSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE++ + L DLRIDT+R+ G+GGQH N T+SAVR+TH+P+G+ +
Sbjct: 209 TSACTVAVMPEADELETIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPSGLVVEC 268
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 269 QDGRSQHANK 278
>gi|386265998|ref|YP_005829490.1| Peptide chain release factor 1 [Haemophilus influenzae R2846]
gi|309973234|gb|ADO96435.1| Peptide chain release factor 1 [Haemophilus influenzae R2846]
Length = 361
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPKL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|417644436|ref|ZP_12294426.1| peptide chain release factor 1 [Staphylococcus warneri VCU121]
gi|330684805|gb|EGG96498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU121]
Length = 358
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 174/258 (67%), Gaps = 10/258 (3%)
Query: 72 IERRSACLENLVNQPEASPA-----EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L +++ P+ +YSK EL+K D + ++K++E+ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVD---VYRSYKSKKEELADIEEM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA
Sbjct: 65 LNETS-DKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY +Y++ +K E+V V+ESD GYKE S ++SG G Y KLKFE+G HRV
Sbjct: 124 AIFAGDLMRMYSKYAEAHHFKTEIVEVSESDHGGYKEISFSVSGNGAYSKLKFENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQ 324
+TH+PTG+ I+ E+SQ
Sbjct: 244 ITHLPTGV-IATSSEKSQ 260
>gi|323496829|ref|ZP_08101866.1| peptide chain release factor 1 [Vibrio sinaloensis DSM 21326]
gi|323318088|gb|EGA71062.1| peptide chain release factor 1 [Vibrio sinaloensis DSM 21326]
Length = 362
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 168/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q+++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A D +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKDAIERLSDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|308182253|ref|YP_003926380.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|420426270|ref|ZP_14925326.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
gi|308064438|gb|ADO06330.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|393044990|gb|EJB45980.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
Length = 352
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|422665159|ref|ZP_16725031.1| peptide chain release factor 1 [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|424066162|ref|ZP_17803634.1| peptide chain release factor 1 [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|424070808|ref|ZP_17808240.1| peptide chain release factor 1 [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440720020|ref|ZP_20900441.1| peptide chain release factor 1 [Pseudomonas syringae BRIP34876]
gi|440726145|ref|ZP_20906402.1| peptide chain release factor 1 [Pseudomonas syringae BRIP34881]
gi|330975577|gb|EGH75643.1| peptide chain release factor 1 [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|407999891|gb|EKG40261.1| peptide chain release factor 1 [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|408002594|gb|EKG42837.1| peptide chain release factor 1 [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|440366742|gb|ELQ03819.1| peptide chain release factor 1 [Pseudomonas syringae BRIP34876]
gi|440367292|gb|ELQ04358.1| peptide chain release factor 1 [Pseudomonas syringae BRIP34881]
Length = 360
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 162/234 (69%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L ++L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVTLYAQLLRVQGDLEGAQALLKDS--DPDMREMAVEEVRETRQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|222053788|ref|YP_002536150.1| peptide chain release factor 1 [Geobacter daltonii FRC-32]
gi|221563077|gb|ACM19049.1| peptide chain release factor 1 [Geobacter daltonii FRC-32]
Length = 356
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 171/259 (66%), Gaps = 6/259 (2%)
Query: 68 RVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS 125
++ +ERR LE L++ P + E+ K ++E L + + EI+G +
Sbjct: 5 KIEELERRYQELEALLSDPVVLGNQPEFRKLSREHFDLSALVQAYRNYKRIISEIEGNRE 64
Query: 126 LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185
L+ D +M +MA EL + L+S + LLPKD D++ ILE+RAGTGG+E
Sbjct: 65 LLA----DPEMKEMAEAELESLEKQRDALESEIKLLLLPKDPNDDKSVILEIRAGTGGDE 120
Query: 186 ASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHR 245
A+LFA D+F+MY R+++ W+ EV+ +ES+ G+KE A++ G GV+ KLK+ESG HR
Sbjct: 121 AALFAGDLFRMYSRFAETNRWRVEVISSSESEKGGFKEVVASVEGEGVFAKLKYESGTHR 180
Query: 246 VQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
VQRVP TE GR+HTSA +VAI+P+A++VD+ + DL+ID YRS G+GGQH NTT+SAV
Sbjct: 181 VQRVPETEAQGRIHTSACTVAIMPEAEDVDIDINPTDLKIDVYRSSGAGGQHVNTTDSAV 240
Query: 306 RVTHIPTGMTISIQDERSQ 324
R+TH+PTG ++ Q+ERSQ
Sbjct: 241 RITHLPTGTVVACQEERSQ 259
>gi|291276374|ref|YP_003516146.1| peptide chain release factor 1 [Helicobacter mustelae 12198]
gi|290963568|emb|CBG39400.1| peptide chain release factor 1 [Helicobacter mustelae 12198]
Length = 352
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 144/198 (72%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
EDK + MA EEL + + K L+ + L+PKD D ++ LE+RAGTGG+EA +F
Sbjct: 68 EDKALAGMAKEELEVLRERAKNLEESIKTLLIPKDPNDGKNIYLELRAGTGGDEAGIFVG 127
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+ Y RY+ K WK E++ +E+++ GYKE A I G GVY +LKFESG HRVQRVP
Sbjct: 128 DLFRAYCRYADLKKWKVEIISSSENNVGGYKEIIALIKGEGVYSRLKFESGTHRVQRVPA 187
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTSA++VA++P+ DEV+V L DLRI+ +R+GG GGQ NTT+SAVR+THIP
Sbjct: 188 TESQGRIHTSAITVALMPEVDEVEVVLNPSDLRIEVFRAGGHGGQCVNTTDSAVRITHIP 247
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ +SIQDE+SQH K+
Sbjct: 248 TGINVSIQDEKSQHKNKE 265
>gi|225023585|ref|ZP_03712777.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC
23834]
gi|224943680|gb|EEG24889.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC
23834]
Length = 358
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 170/250 (68%), Gaps = 7/250 (2%)
Query: 82 LVNQPEASP--AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM 139
L++ PEA+ + + N+E +L + + R + ++ + ++ D +M D
Sbjct: 22 LLSTPEATVDINRFRQLNQEHAELTPVVEAYRQYRQAESDLADAEDMLA----DPEMKDF 77
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EE+ A + + L + L K LLPKD+ D ++ LEVRAGTGG+EA+LFA D+ +MY R
Sbjct: 78 AAEEIEAAKAKIETLDTELQKLLLPKDEDDGKNIFLEVRAGTGGDEAALFAADLLRMYTR 137
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y+++ W+ E+V ESDL GYKE A I+G+G YG+LKFESG HRVQRVP TE GR+H
Sbjct: 138 YAERNRWQVEIVSANESDLGGYKEVIARIAGIGAYGRLKFESGGHRVQRVPATESQGRIH 197
Query: 260 TSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
TSA +VA++P+ADE+ +++L +LRIDT+R+ G+GGQH N T+SA+R+TH+PTGM +
Sbjct: 198 TSACTVAVMPEADELEEIQLNPAELRIDTFRASGAGGQHINKTDSAIRITHLPTGMVVEC 257
Query: 319 QDERSQHMVK 328
QD RSQH K
Sbjct: 258 QDGRSQHANK 267
>gi|384890458|ref|YP_005764591.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|385223128|ref|YP_005783054.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
gi|385230976|ref|YP_005790895.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|307636767|gb|ADN79217.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|325995353|gb|ADZ50758.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|325996950|gb|ADZ49158.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
Length = 352
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 178/272 (65%), Gaps = 10/272 (3%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE-- 119
+ I+ +++ +I RR L L+ S AE K L +L I E+ KE
Sbjct: 1 MSILAEKLSSILRRYDELTALL-----SSAEVVSDIKRLTELSKEQSSIEEISVASKEYL 55
Query: 120 --IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
++G+K E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+
Sbjct: 56 SVLEGIKE-NKELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLEL 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
RAGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE I G GVY +L
Sbjct: 115 RAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ
Sbjct: 175 KFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQC 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 235 VNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|395760366|ref|ZP_10441035.1| peptide chain release factor 1 [Janthinobacterium lividum PAMC
25724]
Length = 358
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 165/253 (65%), Gaps = 7/253 (2%)
Query: 79 LENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L+ L+ P+A+ Y K +E +L L++ R Q+ D + + E D DM
Sbjct: 19 LDELLMHPDATSNMDSYRKMTREHAELGP---LVALYRCYQEAGDDITT-AQEMLGDPDM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
A EE+ A RL+ L LLPKD DER+ LE+RAGTGG+E++LFA D+ +M
Sbjct: 75 KQFAQEEIEAAKATMARLERELQTMLLPKDVNDERNIFLEIRAGTGGDESALFAGDLLRM 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y R++++ W+ E+V ++SDL GY+E + G G Y KLKFESG HRVQRVP TE G
Sbjct: 135 YSRFAERNRWQVELVSSSDSDLGGYREVIVRVVGNGAYSKLKFESGGHRVQRVPATETQG 194
Query: 257 RVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA++P+ADEV DV + DLRIDTYR+ G+GGQH N T+SAVR+TH+PTG+
Sbjct: 195 RIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAVRITHLPTGIV 254
Query: 316 ISIQDERSQHMVK 328
+ QD+RSQH K
Sbjct: 255 VECQDDRSQHKNK 267
>gi|343505037|ref|ZP_08742687.1| peptide chain release factor 1 [Vibrio ichthyoenteri ATCC 700023]
gi|342809079|gb|EGU44205.1| peptide chain release factor 1 [Vibrio ichthyoenteri ATCC 700023]
Length = 362
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|330445230|ref|ZP_08308882.1| peptide chain release factor 1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489421|dbj|GAA03379.1| peptide chain release factor 1 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 362
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L LLPKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLLPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++++GW+ EV+ ++ GYKE A ++G G YG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAERRGWRVEVISENRAEQGGYKEMIAKVNGDGAYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEVPEAEIPEINTGDLKIDTFRSSGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|260879267|ref|ZP_05891622.1| peptide chain release factor 1 [Vibrio parahaemolyticus AN-5034]
gi|308089661|gb|EFO39356.1| peptide chain release factor 1 [Vibrio parahaemolyticus AN-5034]
Length = 325
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 167/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|359298769|ref|ZP_09184608.1| peptide chain release factor 1 [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306985|ref|ZP_10826018.1| peptide chain release factor 1 [Haemophilus sputorum HK 2154]
gi|400373829|gb|EJP26756.1| peptide chain release factor 1 [Haemophilus sputorum HK 2154]
Length = 360
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/198 (56%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D DM DMA EE+ E + L+ L LLPKD DE + LE+RAGTGG+EA +FA
Sbjct: 70 DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + K W+ E + ES+ GYKE ISG GVYG+LKFESG HRVQRVP
Sbjct: 130 DLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPK 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THI
Sbjct: 190 TESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 250 PTGIVVECQDERSQHKNK 267
>gi|161870534|ref|YP_001599706.1| peptide chain release factor 1 [Neisseria meningitidis 053442]
gi|189039981|sp|A9M1Q8.1|RF1_NEIM0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161596087|gb|ABX73747.1| peptide chain release factor I [Neisseria meningitidis 053442]
Length = 358
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|330444669|ref|YP_004377655.1| peptide chain release factor 1 [Chlamydophila pecorum E58]
gi|328807779|gb|AEB41952.1| peptide chain release factor 1 [Chlamydophila pecorum E58]
Length = 363
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 119/242 (49%), Positives = 165/242 (68%), Gaps = 4/242 (1%)
Query: 90 PAEYSKANKELRKLRDSMHLISELRTKQKEI-DGLKSLIYECSEDKDMLDMATEELCLAI 148
P EY +KE +L + ++L+ ++K + D ++L E +D +M+ M E L
Sbjct: 30 PEEYKALSKEHARLSELKEAYAQLQEQEKILADDKQALSME--KDPEMIAMLEEGLVEGK 87
Query: 149 DEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208
E +RL+ +L L+P D D+ + I+E+RAGTGGEEA+LF D +MY YS KGWK+
Sbjct: 88 AETERLRKVLENLLVPPDPDDDLNVIMELRAGTGGEEAALFVGDCVRMYHLYSAAKGWKY 147
Query: 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAIL 268
EV+ +ESDL+GYKE ISG GV L++E+G HRVQRVP TE GRVHTSA++VAIL
Sbjct: 148 EVLSSSESDLKGYKEYVMGISGTGVKRFLQYEAGTHRVQRVPETETQGRVHTSAITVAIL 207
Query: 269 PQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMV 327
P+ E D + + +DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ ++ QDERSQH
Sbjct: 208 PEPAEDDEIIIDEKDLRIDTFRASGAGGQHVNVTDSAVRITHLPTGVVVTCQDERSQHKN 267
Query: 328 KD 329
KD
Sbjct: 268 KD 269
>gi|323492377|ref|ZP_08097530.1| peptide chain release factor 1 [Vibrio brasiliensis LMG 20546]
gi|323313424|gb|EGA66535.1| peptide chain release factor 1 [Vibrio brasiliensis LMG 20546]
Length = 362
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 169/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q+++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLSDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ ES+ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNESEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|421551349|ref|ZP_15997343.1| peptide chain release factor 1 [Neisseria meningitidis 69166]
gi|421561718|ref|ZP_16007556.1| peptide chain release factor 1 [Neisseria meningitidis NM2657]
gi|433471985|ref|ZP_20429364.1| peptide chain release factor 1 [Neisseria meningitidis 68094]
gi|433478196|ref|ZP_20435510.1| peptide chain release factor 1 [Neisseria meningitidis 70012]
gi|433526720|ref|ZP_20483344.1| peptide chain release factor 1 [Neisseria meningitidis 69096]
gi|433539490|ref|ZP_20495959.1| peptide chain release factor 1 [Neisseria meningitidis 70030]
gi|402327938|gb|EJU63321.1| peptide chain release factor 1 [Neisseria meningitidis 69166]
gi|402336745|gb|EJU72003.1| peptide chain release factor 1 [Neisseria meningitidis NM2657]
gi|432206910|gb|ELK62908.1| peptide chain release factor 1 [Neisseria meningitidis 68094]
gi|432213969|gb|ELK69878.1| peptide chain release factor 1 [Neisseria meningitidis 70012]
gi|432259238|gb|ELL14511.1| peptide chain release factor 1 [Neisseria meningitidis 69096]
gi|432271877|gb|ELL26995.1| peptide chain release factor 1 [Neisseria meningitidis 70030]
Length = 358
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|420491997|ref|ZP_14990573.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|420525764|ref|ZP_15024167.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
gi|393108692|gb|EJC09226.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|393133785|gb|EJC34201.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
Length = 352
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFESG HRVQRVP TE GR+HTSA++
Sbjct: 142 RWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFESGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|417842651|ref|ZP_12488732.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21127]
gi|341951210|gb|EGT77787.1| Peptide chain release factor 1 [Haemophilus haemolyticus M21127]
Length = 361
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQR+P TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVTGEGVYGQLKFESGGHRVQRIPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|53720682|ref|YP_109668.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243]
gi|76809766|ref|YP_334968.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b]
gi|126440521|ref|YP_001060595.1| peptide chain release factor 1 [Burkholderia pseudomallei 668]
gi|126454756|ref|YP_001067845.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a]
gi|134283294|ref|ZP_01769995.1| peptide chain release factor 1 [Burkholderia pseudomallei 305]
gi|167721407|ref|ZP_02404643.1| peptide chain release factor 1 [Burkholderia pseudomallei DM98]
gi|167740375|ref|ZP_02413149.1| peptide chain release factor 1 [Burkholderia pseudomallei 14]
gi|167817592|ref|ZP_02449272.1| peptide chain release factor 1 [Burkholderia pseudomallei 91]
gi|167825994|ref|ZP_02457465.1| peptide chain release factor 1 [Burkholderia pseudomallei 9]
gi|167847481|ref|ZP_02472989.1| peptide chain release factor 1 [Burkholderia pseudomallei B7210]
gi|167896069|ref|ZP_02483471.1| peptide chain release factor 1 [Burkholderia pseudomallei 7894]
gi|167904455|ref|ZP_02491660.1| peptide chain release factor 1 [Burkholderia pseudomallei NCTC
13177]
gi|167912716|ref|ZP_02499807.1| peptide chain release factor 1 [Burkholderia pseudomallei 112]
gi|167920676|ref|ZP_02507767.1| peptide chain release factor 1 [Burkholderia pseudomallei BCC215]
gi|217424712|ref|ZP_03456209.1| peptide chain release factor 1 [Burkholderia pseudomallei 576]
gi|226198171|ref|ZP_03793742.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan
9]
gi|237813980|ref|YP_002898431.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346]
gi|242316197|ref|ZP_04815213.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b]
gi|254190473|ref|ZP_04896981.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur
52237]
gi|254198514|ref|ZP_04904935.1| peptide chain release factor 1 [Burkholderia pseudomallei S13]
gi|254260133|ref|ZP_04951187.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a]
gi|254300725|ref|ZP_04968170.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e]
gi|403520285|ref|YP_006654419.1| peptide chain release factor 1 [Burkholderia pseudomallei BPC006]
gi|61214599|sp|Q63QF0.1|RF1_BURPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361515|sp|Q3JN85.1|RF1_BURP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223535|sp|A3NZS4.1|RF1_BURP0 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223536|sp|A3NE24.1|RF1_BURP6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52211096|emb|CAH37084.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243]
gi|76579219|gb|ABA48694.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b]
gi|126220014|gb|ABN83520.1| peptide chain release factor 1 [Burkholderia pseudomallei 668]
gi|126228398|gb|ABN91938.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a]
gi|134245489|gb|EBA45582.1| peptide chain release factor 1 [Burkholderia pseudomallei 305]
gi|157810508|gb|EDO87678.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e]
gi|157938149|gb|EDO93819.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur
52237]
gi|169655254|gb|EDS87947.1| peptide chain release factor 1 [Burkholderia pseudomallei S13]
gi|217392168|gb|EEC32193.1| peptide chain release factor 1 [Burkholderia pseudomallei 576]
gi|225929691|gb|EEH25707.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan
9]
gi|237505256|gb|ACQ97574.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346]
gi|242139436|gb|EES25838.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b]
gi|254218822|gb|EET08206.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a]
gi|403075927|gb|AFR17507.1| peptide chain release factor 1 [Burkholderia pseudomallei BPC006]
Length = 360
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
THIPTG+ + QD+RSQH KD
Sbjct: 247 THIPTGIVVECQDDRSQHKNKD 268
>gi|424924881|ref|ZP_18348242.1| peptide chain release factor 1 [Pseudomonas fluorescens R124]
gi|404306041|gb|EJZ60003.1| peptide chain release factor 1 [Pseudomonas fluorescens R124]
Length = 360
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 162/236 (68%), Gaps = 3/236 (1%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150
A + +KE ++ + +L Q +++ ++L+ + D DM +MA EE+ A +
Sbjct: 33 ARFRAYSKEYAEVEPVVAAYKKLLGVQNDLESAQALLKDS--DPDMREMAVEEVREAKEL 90
Query: 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEV 210
L+S L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E+
Sbjct: 91 LITLESDLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEI 150
Query: 211 VGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQ 270
+ E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+
Sbjct: 151 LSENEGEHGGYKEVIARVEGDNVYGKLKFESGAHRVQRVPATESQGRIHTSACTVAVLPE 210
Query: 271 ADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
DE + + + DLR+DTYRS G+GGQH N T+SA+R+TH+PTG+ + Q+ERSQH
Sbjct: 211 PDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQH 266
>gi|343517491|ref|ZP_08754493.1| peptide chain release factor 1 [Vibrio sp. N418]
gi|342793269|gb|EGU29072.1| peptide chain release factor 1 [Vibrio sp. N418]
Length = 362
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|78065073|ref|YP_367842.1| peptide chain release factor 1 [Burkholderia sp. 383]
gi|119361516|sp|Q39K18.1|RF1_BURS3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77965818|gb|ABB07198.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia sp.
383]
Length = 360
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +E+ A + RL++ L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 71 DLSMRDFAEDEIRSARESMSRLETELQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY R+++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ + QD+RSQH KD
Sbjct: 251 TGIVVECQDDRSQHKNKD 268
>gi|319776412|ref|YP_004138900.1| peptide chain release factor RF-1 [Haemophilus influenzae F3047]
gi|329123576|ref|ZP_08252138.1| peptide chain release factor RF1 [Haemophilus aegyptius ATCC 11116]
gi|317451003|emb|CBY87233.1| peptide chain release factor RF-1 [Haemophilus influenzae F3047]
gi|327470318|gb|EGF15778.1| peptide chain release factor RF1 [Haemophilus aegyptius ATCC 11116]
Length = 361
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE ++G GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKELIVKVTGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|399019154|ref|ZP_10721303.1| peptide chain release factor 1 [Herbaspirillum sp. CF444]
gi|398098301|gb|EJL88588.1| peptide chain release factor 1 [Herbaspirillum sp. CF444]
Length = 356
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 166/255 (65%), Gaps = 7/255 (2%)
Query: 79 LENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
L NL+ Q +A+ Y K +E +L + L +I + L+ D DM
Sbjct: 15 LNNLLMQEDATSDMDNYRKMTREHAELGPLVALYHTYSQAANDIATAQELL----SDPDM 70
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+ A EE+ A + L+ L K LLPKD DER+ LE+RAGTGG+E++LFA D+ +M
Sbjct: 71 KEFAQEEINGAKARMEALEGDLQKMLLPKDPNDERNIFLEIRAGTGGDESALFAGDLLRM 130
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y R++++ W+ E++ +ES++ GYKE I+G G Y +LKFESG HRVQRVP TE G
Sbjct: 131 YTRFAERNRWQVEMMSASESEIGGYKEVIVRIAGFGAYSRLKFESGGHRVQRVPATETQG 190
Query: 257 RVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
R+HTSA +VA++P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+TH+PTG+
Sbjct: 191 RIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAVRITHMPTGIV 250
Query: 316 ISIQDERSQHMVKDS 330
+ QD+RSQH K S
Sbjct: 251 VECQDDRSQHKNKAS 265
>gi|261378877|ref|ZP_05983450.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685]
gi|269144693|gb|EEZ71111.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|420500531|ref|ZP_14999077.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
gi|393152298|gb|EJC52599.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|386860344|ref|YP_006273293.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026b]
gi|418375660|ref|ZP_12965713.1| peptide chain release factor 1 [Burkholderia pseudomallei 354a]
gi|418537949|ref|ZP_13103578.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026a]
gi|418545630|ref|ZP_13110882.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258a]
gi|418545824|ref|ZP_13111066.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258b]
gi|418552270|ref|ZP_13117142.1| peptide chain release factor 1 [Burkholderia pseudomallei 354e]
gi|385345548|gb|EIF52246.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258a]
gi|385349119|gb|EIF55710.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026a]
gi|385366179|gb|EIF71816.1| peptide chain release factor 1 [Burkholderia pseudomallei 1258b]
gi|385373349|gb|EIF78400.1| peptide chain release factor 1 [Burkholderia pseudomallei 354e]
gi|385378143|gb|EIF82645.1| peptide chain release factor 1 [Burkholderia pseudomallei 354a]
gi|385657472|gb|AFI64895.1| peptide chain release factor 1 [Burkholderia pseudomallei 1026b]
Length = 356
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +EL A D RL + L LLPKD DER+ +E+RAGTGG+E++L
Sbjct: 63 ELLADASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 242
Query: 308 THIPTGMTISIQDERSQHMVKD 329
THIPTG+ + QD+RSQH KD
Sbjct: 243 THIPTGIVVECQDDRSQHKNKD 264
>gi|350530483|ref|ZP_08909424.1| peptide chain release factor 1 [Vibrio rotiferianus DAT722]
Length = 362
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 168/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKEAIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|420436481|ref|ZP_14935474.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|420459550|ref|ZP_14958350.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
gi|393054792|gb|EJB55716.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|393077634|gb|EJB78382.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|289549312|ref|YP_003474300.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
gi|289182929|gb|ADC90173.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
Length = 359
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 179/267 (67%), Gaps = 6/267 (2%)
Query: 61 LIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQK 118
L K +E ++ E+R L+ V P+ ++++ +KEL++L + L E R K
Sbjct: 2 LQKELEDKLNLAEKRYLQLQAEVLDPDIVKDRLKFAQISKELKELEELHRLHQEYRKILK 61
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
E++ K L+ ++ ++ +A EE+ E + + + LLPKD+ D ++ ILE+R
Sbjct: 62 ELEETKELL----KNPELEPLAKEEIKRLEKELESTEKRIKIHLLPKDERDSKNVILEIR 117
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GGEEA+LFA D+ MY+RY+++KGWKF ++ ++ L GYKE A + G G Y +LK
Sbjct: 118 AGVGGEEAALFARDLLHMYQRYAEEKGWKFSILSAQKTGLGGYKEVIALVEGEGAYSRLK 177
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP+TE GR+HTS +VA+LP+ADE +V + +DL+I+T+R+ +GGQ+
Sbjct: 178 YESGVHRVQRVPVTEAGGRIHTSTATVAVLPEADETEVHIDPKDLKIETFRASSAGGQYV 237
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT +AVR+TH+PTG+ ++ QDERSQ+
Sbjct: 238 NTTETAVRITHLPTGIVVTCQDERSQY 264
>gi|415942784|ref|ZP_11555980.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
gi|407758794|gb|EKF68568.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
Length = 355
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/201 (54%), Positives = 145/201 (72%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A EE+ A + L+ L K LLP+D DER+ LE+RAGTGG+E++L
Sbjct: 63 ELLSDPDMKAFAQEEIDGAKARMEALELDLQKMLLPRDPNDERNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V +ES+L GYKE A I G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSSSESELGGYKEVIARIVGFGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADEV DV + D+RIDTYR+ G+GGQH N T+SAVR+
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QD+RSQH K
Sbjct: 243 THLPTGIVVECQDDRSQHKNK 263
>gi|213967224|ref|ZP_03395373.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato T1]
gi|301381040|ref|ZP_07229458.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato
Max13]
gi|302060378|ref|ZP_07251919.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato
K40]
gi|302134868|ref|ZP_07260858.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422297078|ref|ZP_16384722.1| peptide chain release factor 1 [Pseudomonas avellanae BPIC 631]
gi|213928066|gb|EEB61612.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato T1]
gi|407991602|gb|EKG33422.1| peptide chain release factor 1 [Pseudomonas avellanae BPIC 631]
Length = 360
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 160/230 (69%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E ++ + L +L Q +++G ++L+ + D DM +MA EE+ + L++
Sbjct: 39 SREYAEVEPVVALYKQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLVELEA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++ E
Sbjct: 97 QLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ DE
Sbjct: 157 EHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 217 IEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|210134282|ref|YP_002300721.1| peptide chain release factor 1 [Helicobacter pylori P12]
gi|238058714|sp|B6JPI0.1|RF1_HELP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|210132250|gb|ACJ07241.1| peptide chain release factor RF-1 [Helicobacter pylori P12]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|421563860|ref|ZP_16009674.1| peptide chain release factor 1 [Neisseria meningitidis NM2795]
gi|402339873|gb|EJU75081.1| peptide chain release factor 1 [Neisseria meningitidis NM2795]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPIVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|343494118|ref|ZP_08732391.1| peptide chain release factor 1 [Vibrio nigripulchritudo ATCC 27043]
gi|342825446|gb|EGU59934.1| peptide chain release factor 1 [Vibrio nigripulchritudo ATCC 27043]
Length = 362
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 165/253 (65%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ PE ++ +KE +L + + Q +++ + + E +D +M
Sbjct: 19 VQHLLGDPEIIGDQDKFRALSKEYSQLEEVTKCFQSYQQAQDDLEAAEEMAKE--DDAEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKASIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EVV ES+ GYKE A + G G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRVEVVNSNESEHGGYKEMIAKVVGDGAYGVLKFESGGHRVQRVPETESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VAI+ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAIMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|385207918|ref|ZP_10034786.1| peptide chain release factor 1 [Burkholderia sp. Ch1-1]
gi|385180256|gb|EIF29532.1| peptide chain release factor 1 [Burkholderia sp. Ch1-1]
Length = 356
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A + +L + L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 63 ELLADASMRDFAEEEIRAARERMDKLGAELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 123 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 242
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 243 THLPTGIVVECQDDRSQHKNKD 264
>gi|424030757|ref|ZP_17770230.1| peptide chain release factor 1 [Vibrio cholerae HENC-01]
gi|424042632|ref|ZP_17780325.1| peptide chain release factor 1 [Vibrio cholerae HENC-02]
gi|408881038|gb|EKM19949.1| peptide chain release factor 1 [Vibrio cholerae HENC-01]
gi|408887922|gb|EKM26411.1| peptide chain release factor 1 [Vibrio cholerae HENC-02]
Length = 362
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 168/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKETIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|389605213|emb|CCA44134.1| peptide chain release factor 1 RF-1 [Neisseria meningitidis
alpha522]
Length = 372
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 35 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 90
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 91 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 150
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 151 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 210
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 211 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 270
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 271 CQDGRSQHANK 281
>gi|449328067|gb|AGE94368.1| peptide chain release factor 1 [Citrobacter amalonaticus Y19]
Length = 360
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 164/233 (70%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q +I+ + ++ +D +M +MA EEL A D+ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQIQDDIETAQMML----DDPEMREMAQEELREAKDKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|289550267|ref|YP_003471171.1| peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315660273|ref|ZP_07913128.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|385783895|ref|YP_005760068.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|418415218|ref|ZP_12988424.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636147|ref|ZP_13198499.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|289179799|gb|ADC87044.1| Peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315494700|gb|EFU83040.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|339894151|emb|CCB53415.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|374841146|gb|EHS04625.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|410875225|gb|EKS23150.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/255 (45%), Positives = 175/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L +++ P+ + + K +KE +L+ ++ + E + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNEMLSDPDVVNNADKLRKYSKEQAELQKTVDVYREYKNKKEELSDIEDMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE D L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIEMLKEESSNLKDALPLLEEKLKFLLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ G++ EVV TESD GYKE S +SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYTKYAEANGFRTEVVEATESDHGGYKEVSFQVSGAGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
IPTG+ I+ E+SQ
Sbjct: 247 IPTGV-IATSSEKSQ 260
>gi|420454622|ref|ZP_14953452.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
gi|393072972|gb|EJB73746.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|261253598|ref|ZP_05946171.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955853|ref|ZP_12598859.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936989|gb|EEX92978.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342812140|gb|EGU47155.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 362
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 169/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q+++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKETIERLNDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ ES+ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNESEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|420421457|ref|ZP_14920535.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
gi|393037975|gb|EJB39009.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|384896816|ref|YP_005772244.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
gi|317011921|gb|ADU82529.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|284047800|ref|YP_003398139.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM
20731]
gi|283952021|gb|ADB46824.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM
20731]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 176/272 (64%), Gaps = 11/272 (4%)
Query: 56 MLSN-DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELR 114
M N D ++ +E R L +E + + E + Q E +Y+KA+ +L +++ R
Sbjct: 1 MFENLDKLQDLEDRYLDLEAKISDPEVIARQEEW--LKYTKAHAKL------TEIVTVYR 52
Query: 115 TKQKEIDGLKS--LIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERD 172
+K +D K I + ED+++ MA EE+ + + L LLP+D DE++
Sbjct: 53 EYKKLVDTWKDDEAIVKAREDQELTAMAEEEMQELQPRLEAYEEKLTLLLLPRDPNDEKN 112
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
I+E+RAG GG+EA+LFA D+F+MY RY+++KGWK E++ + + L G+KE +SG
Sbjct: 113 IIMEIRAGAGGDEAALFAGDLFRMYTRYAEQKGWKVELMDSSPTGLGGFKEVVFMVSGTD 172
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
VY +KFESG+HRVQRVP TE GRVHTS V+VA++P+A EVD+ L D+R+DTYR+GG
Sbjct: 173 VYSHMKFESGVHRVQRVPDTESQGRVHTSTVTVAVMPEAQEVDIELNPADIRVDTYRAGG 232
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
+GGQ+ N T SAVR+THIPTG+ QDE+SQ
Sbjct: 233 AGGQYVNKTESAVRMTHIPTGIVAQCQDEKSQ 264
>gi|78185965|ref|YP_374008.1| peptide chain release factor 1 [Chlorobium luteolum DSM 273]
gi|119361573|sp|Q3B6R6.1|RF1_PELLD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|78165867|gb|ABB22965.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium
luteolum DSM 273]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 175/263 (66%), Gaps = 4/263 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEAS--PAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ +I+ R LE ++ P A+ + + NKE L++ + + +++++
Sbjct: 1 MFDKLQSIKERHLDLERMLADPAAAGDQTRFRRLNKEYSDLKEIVQAYDRYASARQQLEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ + + ED +M MA EE+ + L+ L LLPKD+AD R+ I+E+RAGTG
Sbjct: 61 SRHM-QKAEEDPEMKAMAREEMLELEERIPGLEQELRILLLPKDEADSRNVIMEIRAGTG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESD-LRGYKEASAAISGVGVYGKLKFES 241
GEEA+LFA D+ +MY+RY++++GW+ EV+ ES G++E + ISG VYG LK+ES
Sbjct: 120 GEEAALFAADLMRMYQRYAERQGWRCEVLDYNESSGPGGFREVTLTISGHDVYGTLKYES 179
Query: 242 GIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301
G+HRVQRVP TE GR+HTSA SVA+LP+A+EVDV +R +DLR DTYRSGG GGQ+ N
Sbjct: 180 GVHRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKV 239
Query: 302 NSAVRVTHIPTGMTISIQDERSQ 324
+AVR+TH PTG+ + Q+ERSQ
Sbjct: 240 ETAVRITHEPTGLVAACQEERSQ 262
>gi|187918069|ref|YP_001883632.1| peptide chain release factor 1 [Borrelia hermsii DAH]
gi|238689283|sp|B2RZQ6.1|RF1_BORHD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119860917|gb|AAX16712.1| bacterial peptide chain release factor 1 [Borrelia hermsii DAH]
Length = 357
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/277 (43%), Positives = 180/277 (64%), Gaps = 31/277 (11%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
IKI+E+++ I NLV + EY+K KE + + +++ K+ E +
Sbjct: 13 IKILEEKLQDI--------NLV----KNQKEYAKTVKE-------YNYLEKIKAKKDEYE 53
Query: 122 GLKSLIYECS------EDKDMLDMATEELC---LAIDEEKRLQSLLLKSLLPKDDADERD 172
+ S I E E+ +M ++ +EL L DE + + +LL L +D+ D ++
Sbjct: 54 NILSQINENQKILSEEENLEMKELVKQELAHLNLKKDEVEHMIKILL---LHQDENDSKN 110
Query: 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232
I+E+RAGTGGEEA+LFA ++++MY +YS+KK WK E++ E++L G+KE S I G
Sbjct: 111 IIIEIRAGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKD 170
Query: 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGG 292
V+ KLK ESG+HRVQRVP+TE +GR+ TSA +VA+LP+ ++ D+ + +DLRID YRS G
Sbjct: 171 VFKKLKHESGVHRVQRVPITESNGRLQTSAATVAVLPEVEDTDIEINEKDLRIDVYRSSG 230
Query: 293 SGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+GGQH NTT+SAVR+TH+PTG+ + Q+ERSQH KD
Sbjct: 231 AGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHKNKD 267
>gi|399090598|ref|ZP_10754117.1| peptide chain release factor 1 [Caulobacter sp. AP07]
gi|398027667|gb|EJL21211.1| peptide chain release factor 1 [Caulobacter sp. AP07]
Length = 334
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 167/233 (71%), Gaps = 10/233 (4%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE-K 152
SK + ELR + +++ +++L ++ GL+ E + D DM M +E+ A+DE+
Sbjct: 14 SKEHAELRPVAEAVQALAKLAAERA---GLE----EMASDPDMAAMVADEMQ-ALDEKLP 65
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
++ L L P+D + ILEVRAGTGG+EA+LFA D+F+MY+RY+ +GWK EV
Sbjct: 66 VMERELALMLAPRDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYASLQGWKVEVDS 125
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V+E ++ GYKE A+++G GV+G+ KFESG+HRVQRVP TE GR+HTSA +VA+LP+A+
Sbjct: 126 VSEGEMGGYKEIIASVTGDGVFGRWKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 185
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+V++ + + DLRIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 186 DVEIEINDSDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVT-SSEKSQH 237
>gi|417320522|ref|ZP_12107068.1| peptide chain release factor 1 [Vibrio parahaemolyticus 10329]
gi|328473485|gb|EGF44333.1| peptide chain release factor 1 [Vibrio parahaemolyticus 10329]
Length = 362
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 167/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKEAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|384895459|ref|YP_005769448.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
gi|315586075|gb|ADU40456.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
Length = 352
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 177/271 (65%), Gaps = 8/271 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ Q++ +I +R L L+ S AE K+L +L I E+ KE
Sbjct: 1 MSILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISIASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIKENKELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V++ + DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|423200738|ref|ZP_17187318.1| peptide chain release factor 1 [Aeromonas veronii AER39]
gi|404619556|gb|EKB16466.1| peptide chain release factor 1 [Aeromonas veronii AER39]
Length = 362
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 158/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R Q ++D + ++ E +D D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRYRQAQDDLDTTQMMLEE--DDADLREMAQEELPLAKANLE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY R+++++GW+ +V
Sbjct: 93 ALEQELQLMLLPKDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRFAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A I G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEYGGYKEVIAKIDGERVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 EAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|418323304|ref|ZP_12934585.1| peptide chain release factor 1 [Staphylococcus pettenkoferi VCU012]
gi|365229951|gb|EHM71075.1| peptide chain release factor 1 [Staphylococcus pettenkoferi VCU012]
Length = 359
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 165/258 (63%), Gaps = 9/258 (3%)
Query: 72 IERRSACLENLVNQPEASPAE-----YSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L L++ PE YSK +L+K D +++ +ID +
Sbjct: 8 VEERYEQLNELLSDPEVVNDSDKLRAYSKEQADLQKTVDVYREYKQVKEDLADIDDM--- 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
++DKD +DM EE + L+ L L+PKD D+++ I+E+RA GG+EA
Sbjct: 65 -LRETKDKDEIDMLKEEANNLKPQVPELEEQLKFLLIPKDPNDDKNVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY RYS+ G+K ++V + SD GYKE S I G G Y KLK+E+G HRV
Sbjct: 124 AIFAGDLLRMYSRYSETLGYKTDIVEMNASDHGGYKEVSFMIQGQGAYSKLKYENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+A++V+V +RNED++IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEAEDVEVEIRNEDIKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQ 324
+TH PTG ++ QDE+SQ
Sbjct: 244 ITHTPTGTVVTSQDEKSQ 261
>gi|407794321|ref|ZP_11141348.1| protein chain release factor A [Idiomarina xiamenensis 10-D-4]
gi|407212921|gb|EKE82782.1| protein chain release factor A [Idiomarina xiamenensis 10-D-4]
Length = 362
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + S + Q+++ ++ E +D +M MA +EL A ++++L
Sbjct: 39 SKEYSQLEEIAAEFSRYQQAQEDVQTAAEMLQE--DDAEMRAMAEDELSQAKQQQEQLTQ 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLP+D D+R C +E+RAG GG+EA++FA D+F+MY RY++++GWK +V ++
Sbjct: 97 SLQVLLLPRDPNDDRSCYVEIRAGAGGDEAAIFAGDLFRMYSRYAEQRGWKVSMVSASDG 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD- 275
+ GYKE A +SG G YG++KFESG HRVQRVP TE GR+HTSA +VA+LP+ E +
Sbjct: 157 EHGGYKEVIAHVSGEGCYGRMKFESGGHRVQRVPETESQGRIHTSACTVAVLPEIPEAEA 216
Query: 276 VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
+ + DLR+DTYR+ G+GGQH N T+SA+R+THIPTG+ + QDERSQH
Sbjct: 217 IEINPADLRVDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQDERSQH 266
>gi|420485110|ref|ZP_14983728.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|420515601|ref|ZP_15014064.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|420517302|ref|ZP_15015757.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
gi|393103245|gb|EJC03808.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|393123900|gb|EJC24368.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|393125116|gb|EJC25582.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 166/245 (67%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|422659504|ref|ZP_16721929.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331018122|gb|EGH98178.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 360
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 161/234 (68%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L +L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVALYKQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|421713596|ref|ZP_16152927.1| peptide chain release factor 1 [Helicobacter pylori R32b]
gi|407216962|gb|EKE86799.1| peptide chain release factor 1 [Helicobacter pylori R32b]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVINDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|28897517|ref|NP_797122.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD
2210633]
gi|153840439|ref|ZP_01993106.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810]
gi|260364112|ref|ZP_05776832.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030]
gi|260897557|ref|ZP_05906053.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466]
gi|260903527|ref|ZP_05911922.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037]
gi|433657015|ref|YP_007274394.1| Peptide chain release factor 1 [Vibrio parahaemolyticus BB22OP]
gi|31076863|sp|Q87RN4.1|RF1_VIBPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|28805729|dbj|BAC59006.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD
2210633]
gi|149745897|gb|EDM57027.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810]
gi|308086350|gb|EFO36045.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466]
gi|308110855|gb|EFO48395.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037]
gi|308114221|gb|EFO51761.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030]
gi|432507703|gb|AGB09220.1| Peptide chain release factor 1 [Vibrio parahaemolyticus BB22OP]
Length = 362
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 167/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLAAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|119361546|sp|Q4QKS1.2|RF1_HAEI8 RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 360
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 38 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W E++
Sbjct: 94 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWCVEML 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 267
>gi|28868324|ref|NP_790943.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|32171519|sp|Q888C1.1|RF1_PSESM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|28851561|gb|AAO54638.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 360
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 161/234 (68%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L +L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVALYKQLARVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPKTESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|255993956|ref|ZP_05427091.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
gi|255993624|gb|EEU03713.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
Length = 357
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 164/253 (64%), Gaps = 2/253 (0%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
LE V++PE + + K KE+ + + S + ++E+ K L+ D++M
Sbjct: 15 LEAAVSKPEIIGNQPLWQKYIKEMSDMEPIVKTYSSFKKHKQELSDAKELLAGAGGDEEM 74
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
D+A E+ DE + + L L+PKD DE++ ILE+RAGTGGEEA+LF D+ +M
Sbjct: 75 KDLAKLEISGLEDEINKEEEQLKILLIPKDPRDEKNVILEIRAGTGGEEAALFGSDLLRM 134
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y Y+ K WK E++ + E+ L G KEA I G G + +LK+ESG+HRVQRVP TE SG
Sbjct: 135 YSMYADSKNWKTEIIELNETGLNGIKEAVMLIKGKGAFSRLKYESGVHRVQRVPTTESSG 194
Query: 257 RVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTI 316
RVHTSA +VA+LP+ D+V+V L D+R+D YRS G+GGQ NTT+SAVR+TH PTG+ +
Sbjct: 195 RVHTSAATVAVLPEMDDVEVDLNPNDVRVDVYRSSGNGGQSVNTTDSAVRLTHEPTGIVV 254
Query: 317 SIQDERSQHMVKD 329
+ QDE+SQ KD
Sbjct: 255 TCQDEKSQIKNKD 267
>gi|420402818|ref|ZP_14902006.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
gi|393016285|gb|EJB17445.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 177/271 (65%), Gaps = 8/271 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ Q++ +I +R L L+ S AE K+L +L I E+ KE
Sbjct: 1 MSILAQKLSSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIKENKELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|209516553|ref|ZP_03265407.1| peptide chain release factor 1 [Burkholderia sp. H160]
gi|209502994|gb|EEA02996.1| peptide chain release factor 1 [Burkholderia sp. H160]
Length = 360
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/268 (45%), Positives = 175/268 (65%), Gaps = 7/268 (2%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M++++ + R A L +L+++ + A+ +Y K +E +L + R Q +
Sbjct: 5 MQRKLDQLTTRLAELNDLLSREDITANLDQYRKLTREHAELGPVVDQYGLWRQAQNDAAT 64
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + S M D A EE+ A D + L L K LLPKD D+R+ LE+RAGTG
Sbjct: 65 AQELLTDAS----MRDFAEEEIRAARDRMETLGVELQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+E++LFA D+ +MY RY+++ W+ E++ +ESDL GY+E I+G Y KLKFESG
Sbjct: 121 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYREVIVRIAGDAAYSKLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329
+SAVRVTH+PTG+ + QD+RSQH KD
Sbjct: 241 DSAVRVTHLPTGIVVECQDDRSQHKNKD 268
>gi|37679115|ref|NP_933724.1| peptide chain release factor 1 [Vibrio vulnificus YJ016]
gi|320157139|ref|YP_004189518.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O]
gi|37197857|dbj|BAC93695.1| protein chain release factor A [Vibrio vulnificus YJ016]
gi|319932451|gb|ADV87315.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O]
Length = 363
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + Q+++ + + E +D +M +MA EE+ A + L +
Sbjct: 40 SKEYSQLEEVTKCFTAYKQAQEDLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAA 97
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY ++++K+GW+ EV+ E+
Sbjct: 98 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEA 157
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 158 EHGGYKEMIAKVNGDGAYGFLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 217
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 218 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 270
>gi|421711082|ref|ZP_16150426.1| peptide chain release factor 1 [Helicobacter pylori R030b]
gi|407213287|gb|EKE83145.1| peptide chain release factor 1 [Helicobacter pylori R030b]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|420395969|ref|ZP_14895193.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|420396807|ref|ZP_14896025.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
gi|393012181|gb|EJB13364.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|393012469|gb|EJB13647.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|349609150|ref|ZP_08888558.1| peptide chain release factor 1 [Neisseria sp. GT4A_CT1]
gi|348612987|gb|EGY62589.1| peptide chain release factor 1 [Neisseria sp. GT4A_CT1]
Length = 358
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQQAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHSNK 267
>gi|385224770|ref|YP_005784695.1| peptide chain release factor RF1 [Helicobacter pylori 83]
gi|385248583|ref|YP_005776802.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|317181378|dbj|BAJ59162.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|332672916|gb|AEE69733.1| peptide chain release factor RF1 [Helicobacter pylori 83]
Length = 352
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 177/271 (65%), Gaps = 8/271 (2%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121
+ I+ +++ +I +R L L+ S AE K+L +L I E+ KE
Sbjct: 1 MSILAEKLYSILKRYDELTALL-----SSAEVVSDIKKLTELSKEQSSIEEISVASKEYL 55
Query: 122 GLKSLIYECSE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+ I E E DK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+R
Sbjct: 56 SVLENIKENKELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELR 115
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA +F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LK
Sbjct: 116 AGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLK 175
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
FE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ
Sbjct: 176 FEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCV 235
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 236 NTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|163803585|ref|ZP_02197452.1| peptide chain release factor 1 [Vibrio sp. AND4]
gi|159172627|gb|EDP57484.1| peptide chain release factor 1 [Vibrio sp. AND4]
Length = 362
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 167/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ + ++ +KE +L + + Q ++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGNQDKFRALSKEYSQLEEVTQCFQAYQQAQDDLAAAEDMANE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y +Y++K+GW+ EV+ ES+ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKYAEKRGWRIEVMSSNESEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA ++A++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTLAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|68249924|ref|YP_249036.1| peptide chain release factor 1 [Haemophilus influenzae 86-028NP]
gi|68058123|gb|AAX88376.1| peptide chain release factor 1 [Haemophilus influenzae 86-028NP]
Length = 361
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W E++
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWCVEML 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ GYKE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SANESEQGGYKEVIVKVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|416068899|ref|ZP_11582975.1| peptide chain release factor 1 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348000526|gb|EGY41306.1| peptide chain release factor 1 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 360
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 161/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L + S + ++L + +E+ L+ + E K+M M EE +++ E
Sbjct: 38 YSKEYAQLEDVVKSFNRWNQLNSNLEEV----QLLLDDPEMKEMAQMEIEESKAELEQVE 93
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W+ EV+
Sbjct: 94 QYLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAETKRWRVEVL 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ G+KE A +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SENESEQGGFKEIIALVSGDGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYR+ G+GGQH N T+SAVR+THIPTGM + QDERSQH K
Sbjct: 210 PESEMPEINPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGMVVECQDERSQHKNK 267
>gi|225075789|ref|ZP_03718988.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens
NRL30031/H210]
gi|224952871|gb|EEG34080.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens
NRL30031/H210]
Length = 358
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|340361634|ref|ZP_08684052.1| peptide chain release factor RF1 [Neisseria macacae ATCC 33926]
gi|419798872|ref|ZP_14324259.1| peptide chain release factor 1 [Neisseria sicca VK64]
gi|339888384|gb|EGQ77849.1| peptide chain release factor RF1 [Neisseria macacae ATCC 33926]
gi|385693459|gb|EIG24106.1| peptide chain release factor 1 [Neisseria sicca VK64]
Length = 358
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|406838187|ref|ZP_11097781.1| peptide chain release factor 1 [Lactobacillus vini DSM 20605]
Length = 360
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 116/269 (43%), Positives = 180/269 (66%), Gaps = 7/269 (2%)
Query: 59 NDLIKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTK 116
NDL K R+ +E R L L++ PE A +++K +KE+ LR+++ E +
Sbjct: 2 NDLFK----RLQTLEDRYEELGELLSDPEVIADTPKFTKLSKEMADLRETVEKYREYKKV 57
Query: 117 QKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ I + ++ E +D +M M +EL A ++ RL+ + LLPKD DE++ I+E
Sbjct: 58 SQTIADDQEMLNEKLDD-EMAAMVKDELNTAKEKRVRLEEKIKLLLLPKDPNDEKNIIME 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+R GG+EASLFA D+F MY +Y++K+GWK +VV +++ G+KE + I+G VY K
Sbjct: 117 IRGAAGGDEASLFAADLFNMYSKYAEKQGWKIQVVDKNVTEVGGFKEIALVINGKSVYSK 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG HRVQRVP+TE +GRVHTS +V ++P+ ++V++ L +D+R+D +RS G+GGQ
Sbjct: 177 LKYESGAHRVQRVPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVFRSSGAGGQ 236
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQH 325
H N T+SAVR+TH+PTG+ +S+QD+RSQ
Sbjct: 237 HINKTSSAVRMTHLPTGIVVSMQDQRSQQ 265
>gi|207744458|ref|YP_002260850.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum IPO1609]
gi|206595864|emb|CAQ62791.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum IPO1609]
Length = 356
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A +EL +A D L++ L + LLPKD D R+ LE+RAGTGG+E++L
Sbjct: 63 ELLADPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V + SDL GYKE A + G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+AD + D+++ DLRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 183 VPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 243 THLPTGLVVECQDDRSQHRNKD 264
>gi|320354565|ref|YP_004195904.1| peptide chain release factor 1 (bRF-1) [Desulfobulbus propionicus
DSM 2032]
gi|320123067|gb|ADW18613.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfobulbus
propionicus DSM 2032]
Length = 356
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 149/207 (71%)
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+I G + LI +D D++++A E+ + ++ L+ + LLPKD D+++ LE+R
Sbjct: 57 QIAGNQELIRTEQDDPDLVELAKAEIEELVVKQTELEQAIRIRLLPKDPNDDKNIFLEIR 116
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA+LF D+F+MY RY++ +GWK EV+ + G+KE A +SG VY +LK
Sbjct: 117 AGTGGDEAALFVADLFRMYSRYAEMQGWKVEVMSSNPIGIGGFKELIALVSGTQVYSRLK 176
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHA 298
+ESG+HRVQRVP TE GR+HTSAV+VAI+P+A+EVD+ + +L+ D YRS G GGQ
Sbjct: 177 YESGVHRVQRVPDTETQGRIHTSAVTVAIIPEAEEVDLHIEPNELKFDVYRSSGPGGQSV 236
Query: 299 NTTNSAVRVTHIPTGMTISIQDERSQH 325
NTT+SAVRVTH+PTG+ ++ QDE+SQH
Sbjct: 237 NTTDSAVRVTHLPTGLVVTCQDEKSQH 263
>gi|82703754|ref|YP_413320.1| peptide chain release factor 1 [Nitrosospira multiformis ATCC
25196]
gi|119361568|sp|Q2Y5P3.1|RF1_NITMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|82411819|gb|ABB75928.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrosospira
multiformis ATCC 25196]
Length = 358
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/201 (53%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E + + +M + A E+ A + R + L K LLPKD DER+ LE+RAGTGG+E++L
Sbjct: 67 EMAAEAEMREFADAEIRDAKERLVRYGAELQKQLLPKDPNDERNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY R+++++ W+ E++ + SD+ GYKE A ISG G Y KLKFESG HRVQR
Sbjct: 127 FAADLFRMYARFAERQRWQVEIISQSPSDVGGYKEIIAKISGEGAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ DV L +LRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIEDVALNPAELRIDTFRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVK 328
TH+PTG+ + QD RSQH K
Sbjct: 247 THLPTGIVVECQDGRSQHKNK 267
>gi|420424660|ref|ZP_14923724.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|420530596|ref|ZP_15028972.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
gi|393043247|gb|EJB44251.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|393139375|gb|EJC39753.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
Length = 352
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 166/245 (67%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|329888688|ref|ZP_08267286.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568]
gi|328847244|gb|EGF96806.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568]
Length = 345
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 164/236 (69%), Gaps = 8/236 (3%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ ++ R E D LK++ + D +M +A++EL +
Sbjct: 25 SKEHAELKPVADAVQALARARA---EADDLKAM----AADPEMAALASDELDALTERLPT 77
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L P+D + +LEVRAGTGG+EA+LFA D+F+MY RY+Q +GW+ E+
Sbjct: 78 LEREVALLLAPRDADENASAVLEVRAGTGGDEAALFAGDLFRMYSRYAQSRGWRVEIDSA 137
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
E D G+KE A +SG GV+G+LKFESG+HRVQRVP TE GR+HTSA ++A+LP+ ++
Sbjct: 138 AEGDAGGFKEIIATVSGEGVFGRLKFESGVHRVQRVPTTEAGGRIHTSAATIAVLPEVED 197
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V++ + ++D+RIDTYRS G+GGQH N T+SAVR+TH+PTG+ ++ E+SQH+ +D
Sbjct: 198 VEIEILDKDIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHVNRD 252
>gi|333898002|ref|YP_004471876.1| peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333113267|gb|AEF18204.1| Peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 353
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 174/262 (66%), Gaps = 5/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ AIE R L ++ PE+ E+ K KE L + + E + + +I+
Sbjct: 1 MIDKLKAIEDRYVELSQKLSDPESMKDMDEWKKMAKEQAGLEEIVQKYREYKKVKDDIES 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K LI D ++ DMA +EL ++E+ L + + LLPKD DE+D I+E+RAG G
Sbjct: 61 TKELI---EMDDELKDMAEDELKSLEEKEESLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA D+F+MY Y++KK WK+E++ ++L G+KE +I+G G Y +LKFESG
Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKRWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQR+P TE GR+HTS +VA+LP+ ++VD+ + D++ID +RSGG GGQ NTT+
Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVNTTD 237
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIPTG+ IS QDERSQ
Sbjct: 238 SAVRLTHIPTGIVISCQDERSQ 259
>gi|308183875|ref|YP_003928008.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
gi|308059795|gb|ADO01691.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
Length = 352
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 105/201 (52%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|254253376|ref|ZP_04946694.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158]
gi|124895985|gb|EAY69865.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158]
Length = 360
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A +E+ A D RL+ L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLADPSMRDFAEDEIRSARDRMARLELELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY R+++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRFAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
THIPTG+ + QD+RSQH KD
Sbjct: 247 THIPTGIVVECQDDRSQHKNKD 268
>gi|298369801|ref|ZP_06981117.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281261|gb|EFI22750.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str.
F0314]
Length = 358
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|254671653|emb|CBA09383.1| peptide chain release factor 1 [Neisseria meningitidis alpha153]
Length = 372
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 35 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 90
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 91 FAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 150
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 151 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 210
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 211 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 270
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 271 CQDGRSQHANK 281
>gi|315497942|ref|YP_004086746.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48]
gi|315415954|gb|ADU12595.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48]
Length = 358
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 163/233 (69%), Gaps = 6/233 (2%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
SK + EL+ + D++ + + R E++ L +L D ++ +A EE +
Sbjct: 36 SKEHAELKPVVDAVTALLKARASGPELEELIAL-----NDPELSPLAQEEFQELKERLPE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L+ + L PKD + ILEVRAGTGG+EA+LFA D+F+MY RY+ +GW+ E+ +
Sbjct: 91 LERGVALLLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYSRYAASQGWRVEIDSI 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E D GYKE A+++G GV+GKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+A++
Sbjct: 151 SEGDAGGYKEIIASVTGDGVFGKLKFESGVHRVQRVPATEAGGRIHTSAATVAVLPEAED 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHM 326
V++ ++++D+RIDTYR+ GSGGQH N T+SAVR+TH+PTG+ ++ E+SQHM
Sbjct: 211 VEIDIQDKDIRIDTYRASGSGGQHVNKTDSAVRITHLPTGI-VATSSEKSQHM 262
>gi|293398675|ref|ZP_06642853.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62]
gi|291611146|gb|EFF40243.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62]
Length = 358
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 165/251 (65%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIRAGTGGGEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|332306089|ref|YP_004433940.1| peptide chain release factor 1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410643503|ref|ZP_11353999.1| peptide chain release factor 1 [Glaciecola chathamensis S18K6]
gi|410645140|ref|ZP_11355608.1| peptide chain release factor 1 [Glaciecola agarilytica NO2]
gi|332173418|gb|AEE22672.1| peptide chain release factor 1 [Glaciecola sp. 4H-3-7+YE-5]
gi|410135373|dbj|GAC04007.1| peptide chain release factor 1 [Glaciecola agarilytica NO2]
gi|410136913|dbj|GAC12186.1| peptide chain release factor 1 [Glaciecola chathamensis S18K6]
Length = 362
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 176/268 (65%), Gaps = 13/268 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
+++++ ++ R ++ LV+QPE A +Y KE +L + ++ ++ Q++ +
Sbjct: 5 VQRKLESLTERFEEVQALVSQPEIIADQDKYRALTKEYSQLEGVVKCFADYQSAQQDFES 64
Query: 123 LKSLIYECSEDKDMLDMATEELC---LAIDE-EKRLQSLLLKSLLPKDDADERDCILEVR 178
+ ++ E D +M +MA EE LAI++ E LQ LLL PKD DE +C +E+R
Sbjct: 65 AQEMMQES--DPEMREMAQEEYKSSKLAIEQYEDELQILLL----PKDPNDESNCFVEIR 118
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AG GG+EA++FA D+F+MY RY++ + WK EVV + E D GYKE A I G G YG LK
Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEARRWKVEVVTMNEGDHGGYKEVIANIIGDGAYGILK 178
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQH 297
FESG HRVQRVP TE GR+HTSA +V ++P+ E + + + DL+IDT+R+ G+GGQH
Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVAESEAIEVNKADLKIDTFRASGAGGQH 238
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQH 325
N T+SA+R+TH+P+G+ + QDERSQH
Sbjct: 239 VNKTDSAIRITHVPSGIVVECQDERSQH 266
>gi|386332275|ref|YP_006028444.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum Po82]
gi|421895781|ref|ZP_16326180.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum MolK2]
gi|206586946|emb|CAQ17530.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum MolK2]
gi|334194723|gb|AEG67908.1| peptide chain release factor 1 (rf-1) protein [Ralstonia
solanacearum Po82]
Length = 356
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/202 (52%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D DM A +EL +A D L++ L + LLPKD D R+ LE+RAGTGG+E++L
Sbjct: 63 ELLADPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E+V + SDL GYKE A + G G Y +LKFESG HRVQR
Sbjct: 123 FAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+AD + D+++ DLRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 183 VPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHINKTDSAVRI 242
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 243 THLPTGLVVECQDDRSQHRNKD 264
>gi|326423672|ref|NP_759262.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6]
gi|32171537|sp|Q8DFF9.2|RF1_VIBVU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|46576703|sp|Q7MMY6.2|RF1_VIBVY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|319999027|gb|AAO08789.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6]
Length = 362
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + + Q+++ + + E +D +M +MA EE+ A + L +
Sbjct: 39 SKEYSQLEEVTKCFTAYKQAQEDLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAA 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA D+F+MY ++++K+GW+ EV+ E+
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEA 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VAI+P+ E ++
Sbjct: 157 EHGGYKEMIAKVNGDGAYGFLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEI 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|326203238|ref|ZP_08193103.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782]
gi|325986496|gb|EGD47327.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782]
Length = 359
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 175/267 (65%), Gaps = 3/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ A E R + + ++ P+ + EY K KE L + + E KEI+
Sbjct: 1 MFDKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKEYSDLEEIVQKYREYTKVSKEIEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + + DKD +M +E A ++ + ++ L ++PKD D+++ I+E+R G G
Sbjct: 61 ARELL-DQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAG 119
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
GEEA+LFA +F+ +Y++KK WK+E++ ++L G+KE +I G G Y +LKFESG
Sbjct: 120 GEEAALFAGVLFRAMTKYAEKKRWKYEIMDSNPTELGGFKEVVFSIEGKGAYSRLKFESG 179
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS ++VA+LP+ +EVDV + DLRIDTYR+ G+GGQH N T+
Sbjct: 180 VHRVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTD 239
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SA+R+TH+P+G+ +S QDERSQH KD
Sbjct: 240 SAIRITHMPSGIVVSCQDERSQHKNKD 266
>gi|420420826|ref|ZP_14919910.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
gi|393035625|gb|EJB36669.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
Length = 352
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|217033144|ref|ZP_03438604.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128]
gi|298736978|ref|YP_003729508.1| peptide chain release factor RF-1 [Helicobacter pylori B8]
gi|216945129|gb|EEC23827.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128]
gi|298356172|emb|CBI67044.1| peptide chain release factor RF-1 [Helicobacter pylori B8]
Length = 352
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K+L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|71736680|ref|YP_273268.1| peptide chain release factor 1 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482007|ref|ZP_05636048.1| peptide chain release factor 1 [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|289627918|ref|ZP_06460872.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289647287|ref|ZP_06478630.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416014623|ref|ZP_11562373.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. B076]
gi|416029124|ref|ZP_11572013.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406646|ref|ZP_16483670.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422584076|ref|ZP_16659191.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422598325|ref|ZP_16672588.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|422604205|ref|ZP_16676222.1| peptide chain release factor 1 [Pseudomonas syringae pv. mori str.
301020]
gi|119361578|sp|Q48MV4.1|RF1_PSE14 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71557233|gb|AAZ36444.1| peptide chain release factor 1 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159707|gb|EFI00749.1| Peptide chain release factor 1 [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325690|gb|EFW81751.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327391|gb|EFW83405.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330868898|gb|EGH03607.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330881882|gb|EGH16031.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330887864|gb|EGH20525.1| peptide chain release factor 1 [Pseudomonas syringae pv. mori str.
301020]
gi|330988605|gb|EGH86708.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 360
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 161/234 (68%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E ++ + L +L Q +++G ++L+ + D DM +MA EE+ +
Sbjct: 35 FRAYSREYAEVEPVVALYQQLIRVQGDLEGAQALLKDS--DPDMREMAVEEVRETKQQLV 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 ELEAQLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + GYKE A + G VYGKLKFESG HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|387781776|ref|YP_005792489.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
gi|261837535|gb|ACX97301.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
Length = 352
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL L ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|374261664|ref|ZP_09620242.1| peptide chain release factor 1 [Legionella drancourtii LLAP12]
gi|363537758|gb|EHL31174.1| peptide chain release factor 1 [Legionella drancourtii LLAP12]
Length = 351
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 144/197 (73%), Gaps = 1/197 (0%)
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
+D+++ MA +EL A + L L L+PKD DER+ LEVRAGTGG+EA++F
Sbjct: 59 AGDDQELATMAEDELEDAQKQIDELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIF 118
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+++MY RY++ +GW+ E++ + + GYKE A ISG VY +LKFESG HRVQRV
Sbjct: 119 AGDLYRMYSRYAENQGWQLELISASHGEHGGYKEIIARISGNAVYSQLKFESGAHRVQRV 178
Query: 250 PLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GRVHTSA +VA++P+ +E+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+T
Sbjct: 179 PDTESQGRVHTSACTVAVMPEVEEIDDIQINTDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238
Query: 309 HIPTGMTISIQDERSQH 325
HIPTG+ + QDERSQH
Sbjct: 239 HIPTGVVVECQDERSQH 255
>gi|296134391|ref|YP_003641638.1| peptide chain release factor 1 [Thermincola potens JR]
gi|296032969|gb|ADG83737.1| peptide chain release factor 1 [Thermincola potens JR]
Length = 355
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/272 (45%), Positives = 172/272 (63%), Gaps = 13/272 (4%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ ++E + L L+ PE A +++ + K L + + E ++ K ID
Sbjct: 1 MLAKLQSLEEKYEELSKLIADPEIIADQSQWQRHAKAHAALTEIVSTYREYKSVLKGIDE 60
Query: 123 LKSLIYECSEDKDMLDMATEELC----LAIDEEKRLQSLLLKSLL-PKDDADERDCILEV 177
K L+ KD LD E+ + E++ S+ LK LL PKD DE++ I+E+
Sbjct: 61 AKELL------KDQLDSEFREMVEQELAELKEKEEKLSVQLKILLLPKDPNDEKNVIMEI 114
Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
R G GGEEA+LFA D+F+MY RY++ KGWK E++ +D+ G+KE I G G Y +L
Sbjct: 115 RGGAGGEEAALFAGDLFRMYSRYAEAKGWKTEILSSNPTDIGGFKEIIFLIEGQGAYSRL 174
Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
KFESG+HRVQRVP TE SGR+HTS V+VA+LP+A+EVDV + DLRID + S G GGQ
Sbjct: 175 KFESGVHRVQRVPTTESSGRIHTSTVTVAVLPEAEEVDVDIDPNDLRIDVFCSSGPGGQS 234
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
NTT SAVRVTHIPTG+ +S QDE+SQH K+
Sbjct: 235 VNTTQSAVRVTHIPTGIVVSCQDEKSQHKNKE 266
>gi|145588324|ref|YP_001154921.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|189039983|sp|A4SV43.1|RF1_POLSQ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145046730|gb|ABP33357.1| bacterial peptide chain release factor 1 (bRF-1) [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 359
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 143/195 (73%), Gaps = 1/195 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M D A EE A + L+ L K LLPKD DER+ LE+RAGTGG+E++LFA
Sbjct: 70 KDPEMKDFADEEQKQAQATMEELEGALQKLLLPKDVNDERNVFLEIRAGTGGDESALFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY R+++++GWK EVV ESDL GYKE + G VY +LKFESG HRVQRVP
Sbjct: 130 DLLRMYTRFAERQGWKVEVVNAAESDLGGYKEVVLRLVGQSVYSRLKFESGGHRVQRVPQ 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ADE++ V++ +LRIDT+R+ G+GGQH N T+SAVR+THI
Sbjct: 190 TETQGRIHTSACTVAVMPEADELEAVKINPAELRIDTFRASGAGGQHINKTDSAVRITHI 249
Query: 311 PTGMTISIQDERSQH 325
PTG + QD+RSQH
Sbjct: 250 PTGTVVECQDDRSQH 264
>gi|126665163|ref|ZP_01736146.1| peptide chain release factor 1 [Marinobacter sp. ELB17]
gi|126630533|gb|EBA01148.1| peptide chain release factor 1 [Marinobacter sp. ELB17]
Length = 364
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 150/208 (72%), Gaps = 1/208 (0%)
Query: 119 EIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVR 178
+I+ + L + D DM +MA EEL A + L + L +LPKD D ++ LEVR
Sbjct: 61 DINEARELSKDGDADADMREMAEEELHTAQQASEELDAELQGLMLPKDPNDGKNVFLEVR 120
Query: 179 AGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLK 238
AGTGG+EA++FA D+F+MY R+++++ W+ E++ +E + GYKE A ++G GVYG LK
Sbjct: 121 AGTGGDEAAIFAGDLFRMYSRFAERRRWQVEILSASEGEHGGYKEVIARVAGSGVYGTLK 180
Query: 239 FESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQH 297
FESG+HRVQRVP TE GR+HTSA +VA++P+ADE + V + DLR+DT+R+ G+GGQH
Sbjct: 181 FESGVHRVQRVPETESQGRIHTSACTVAVMPEADEAEAVEINKGDLRVDTFRASGAGGQH 240
Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQH 325
N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 241 VNKTDSAIRITHLPSGLVVECQEERSQH 268
>gi|319637760|ref|ZP_07992526.1| peptide chain release factor 1 [Neisseria mucosa C102]
gi|317400915|gb|EFV81570.1| peptide chain release factor 1 [Neisseria mucosa C102]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|385215355|ref|YP_005775311.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|420493433|ref|ZP_14992004.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
gi|317179883|dbj|BAJ57669.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|393112689|gb|EJC13209.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|283785500|ref|YP_003365365.1| peptide chain release factor 1 [Citrobacter rodentium ICC168]
gi|282948954|emb|CBG88557.1| peptide chain release factor 1 [Citrobacter rodentium ICC168]
Length = 360
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 164/233 (70%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ R Q +I+ + ++ +D +M +MA +EL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWRQVQDDIETAQMML----DDPEMREMAQDELRDAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ + E
Sbjct: 95 QLQLLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWRVEIMSMNEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDTYRS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPADLRIDTYRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|407363822|ref|ZP_11110354.1| peptide chain release factor 1 [Pseudomonas mandelii JR-1]
Length = 360
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 163/234 (69%), Gaps = 6/234 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
YSK E+ + + +L Q +++G ++L+ + D DM +MA EE+ A ++
Sbjct: 38 YSKEYAEVEPI---VATYKQLLKVQGDLEGAQALLKDS--DPDMREMAVEEVREAKEQLI 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+++ L + LLPKD D R+ LE+RAGTGG+EA++F+ D+F+MY RY++++GW+ E++
Sbjct: 93 DIEASLQRMLLPKDPNDGRNVFLEIRAGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ GYKE A + G VYGKLKFESG+HRVQRVP TE GR+HTSA +VA+LP+ D
Sbjct: 153 ENIGEHGGYKEVIARVEGENVYGKLKFESGVHRVQRVPATESQGRIHTSACTVAVLPEPD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DLR+DTYRS G+GGQH N T+SA+R+TH+P+G+ + Q+ERSQH
Sbjct: 213 EQETIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQEERSQH 266
>gi|421540940|ref|ZP_15987076.1| peptide chain release factor 1 [Neisseria meningitidis 93004]
gi|433469811|ref|ZP_20427221.1| peptide chain release factor 1 [Neisseria meningitidis 98080]
gi|402316805|gb|EJU52345.1| peptide chain release factor 1 [Neisseria meningitidis 93004]
gi|432201880|gb|ELK57953.1| peptide chain release factor 1 [Neisseria meningitidis 98080]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|261379805|ref|ZP_05984378.1| peptide chain release factor 1 [Neisseria subflava NJ9703]
gi|284797490|gb|EFC52837.1| peptide chain release factor 1 [Neisseria subflava NJ9703]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|389873756|ref|YP_006381175.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
gi|388539005|gb|AFK64193.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
Length = 361
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+ S D ++ +MA EEL LA + LQ L LLP+D D R LEVRAGTGG+E+++
Sbjct: 67 DMSSDPELREMAEEELKLAKARLEELQEQLQVQLLPRDPDDGRSVFLEVRAGTGGDESAI 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F+ D+F+MY RY+++KGWK EV+ ES++ GY+E A + G GVYG+LK+ESG HRVQR
Sbjct: 127 FSGDLFRMYSRYAEQKGWKVEVISENESEMGGYREVIARVDGDGVYGRLKYESGAHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GRVHTSA +VA+LP+ADE+ +V L DLRIDT+R+ G+GGQH N T+SAVR+
Sbjct: 187 VPETESQGRVHTSACTVAVLPEADEIAEVALNPADLRIDTFRASGAGGQHINKTDSAVRI 246
Query: 308 THIPTGMTISIQDERSQHMVK 328
THIPTG+ QD+RSQH K
Sbjct: 247 THIPTGIVAECQDDRSQHKNK 267
>gi|239637411|ref|ZP_04678393.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
gi|239597011|gb|EEQ79526.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 173/258 (67%), Gaps = 10/258 (3%)
Query: 72 IERRSACLENLVNQPEASPA-----EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126
+E R L +++ P+ +YSK EL+K D + ++K++E+ ++ +
Sbjct: 8 VEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVD---VYRSYKSKKEELADIEEM 64
Query: 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEA 186
+ E S DK+ ++M EE +E ++ L L+PKD DE+D I+E+RA GG+EA
Sbjct: 65 LNETS-DKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGDEA 123
Query: 187 SLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRV 246
++FA D+ +MY +Y++ +K E+V +ESD GYKE S ++SG G Y KLKFE+G HRV
Sbjct: 124 AIFAGDLMRMYSKYAEAHNFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRV 183
Query: 247 QRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVR 306
QRVP TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR
Sbjct: 184 QRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVR 243
Query: 307 VTHIPTGMTISIQDERSQ 324
+TH+PTG+ I+ E+SQ
Sbjct: 244 ITHLPTGV-IATSSEKSQ 260
>gi|385338525|ref|YP_005892398.1| peptide chain release factor I (RF-1) [Neisseria meningitidis WUE
2594]
gi|433476134|ref|ZP_20433470.1| peptide chain release factor 1 [Neisseria meningitidis 88050]
gi|433480334|ref|ZP_20437618.1| peptide chain release factor 1 [Neisseria meningitidis 63041]
gi|433514035|ref|ZP_20470821.1| peptide chain release factor 1 [Neisseria meningitidis 63049]
gi|433516289|ref|ZP_20473053.1| peptide chain release factor 1 [Neisseria meningitidis 2004090]
gi|433518111|ref|ZP_20474852.1| peptide chain release factor 1 [Neisseria meningitidis 96023]
gi|433520399|ref|ZP_20477113.1| peptide chain release factor 1 [Neisseria meningitidis 65014]
gi|433524644|ref|ZP_20481301.1| peptide chain release factor 1 [Neisseria meningitidis 97020]
gi|433528987|ref|ZP_20485594.1| peptide chain release factor 1 [Neisseria meningitidis NM3652]
gi|433530993|ref|ZP_20487576.1| peptide chain release factor 1 [Neisseria meningitidis NM3642]
gi|433533260|ref|ZP_20489818.1| peptide chain release factor 1 [Neisseria meningitidis 2007056]
gi|433535111|ref|ZP_20491646.1| peptide chain release factor 1 [Neisseria meningitidis 2001212]
gi|433541572|ref|ZP_20498018.1| peptide chain release factor 1 [Neisseria meningitidis 63006]
gi|319410939|emb|CBY91334.1| peptide chain release factor I (RF-1) [Neisseria meningitidis WUE
2594]
gi|432208650|gb|ELK64626.1| peptide chain release factor 1 [Neisseria meningitidis 88050]
gi|432214510|gb|ELK70410.1| peptide chain release factor 1 [Neisseria meningitidis 63041]
gi|432246197|gb|ELL01653.1| peptide chain release factor 1 [Neisseria meningitidis 63049]
gi|432251575|gb|ELL06939.1| peptide chain release factor 1 [Neisseria meningitidis 2004090]
gi|432252241|gb|ELL07598.1| peptide chain release factor 1 [Neisseria meningitidis 96023]
gi|432252696|gb|ELL08047.1| peptide chain release factor 1 [Neisseria meningitidis 65014]
gi|432258330|gb|ELL13616.1| peptide chain release factor 1 [Neisseria meningitidis 97020]
gi|432264091|gb|ELL19301.1| peptide chain release factor 1 [Neisseria meningitidis NM3652]
gi|432264804|gb|ELL20001.1| peptide chain release factor 1 [Neisseria meningitidis NM3642]
gi|432265388|gb|ELL20583.1| peptide chain release factor 1 [Neisseria meningitidis 2007056]
gi|432270305|gb|ELL25445.1| peptide chain release factor 1 [Neisseria meningitidis 2001212]
gi|432276404|gb|ELL31461.1| peptide chain release factor 1 [Neisseria meningitidis 63006]
Length = 358
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|420451240|ref|ZP_14950094.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
gi|393065172|gb|EJB66002.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEVIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|113869288|ref|YP_727777.1| peptide chain release factor 1 [Ralstonia eutropha H16]
gi|113528064|emb|CAJ94409.1| protein chain release factor A (RF-1) [Ralstonia eutropha H16]
Length = 356
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 164/239 (68%), Gaps = 5/239 (2%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
+Y K ++E +L + R Q ++ ++L+ +D +M D A +E+ A
Sbjct: 30 QYRKLSREHAELSPVAEQYGQYRQAQDDLATAQALL----DDPEMKDFAADEIASARARL 85
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
+ L++ L + LLPKD D+R+ +LE+RAGTGGEE++LFA D+ +MY RY++++ W+ EV+
Sbjct: 86 EGLEASLQRLLLPKDPNDDRNLLLEIRAGTGGEESALFAGDLLRMYTRYAERQRWQVEVM 145
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
+ SDL GYKE I+G + +LKFESG HRVQRVP TE GR+HTSA +VA++P+A
Sbjct: 146 SESASDLGGYKEVIVRIAGDAAFSRLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEA 205
Query: 272 DEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
DEV +V + DLRIDT+R+ G+GGQH N T+SAVR+TH+PTG+ + QD+RSQH KD
Sbjct: 206 DEVGEVEINPADLRIDTFRASGAGGQHVNKTDSAVRLTHLPTGIVVECQDDRSQHRNKD 264
>gi|420412943|ref|ZP_14912068.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
gi|393030704|gb|EJB31782.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 164/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSD 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK EVV
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEVVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|407714872|ref|YP_006835437.1| peptide chain release factor 1 [Burkholderia phenoliruptrix
BR3459a]
gi|407237056|gb|AFT87255.1| peptide chain release factor 1 [Burkholderia phenoliruptrix
BR3459a]
Length = 360
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 144/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D ++L L LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLTDASMRDFAEEEIRAARDRMEQLGGELQTMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 247 THLPTGIVVECQDDRSQHKNKD 268
>gi|238755548|ref|ZP_04616886.1| Peptide chain release factor 1 [Yersinia ruckeri ATCC 29473]
gi|238706228|gb|EEP98607.1| Peptide chain release factor 1 [Yersinia ruckeri ATCC 29473]
Length = 360
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E ++ Q++I+ + ++ +D +M +MA EEL A + L+
Sbjct: 39 SREYAQLTDVTRCFKEWQSVQEDIETAEMML----DDPEMREMAQEELKDARTRSEALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER C LE+RAGTGG+EA++FA D+F+MY RY++ + WK EV+ ++
Sbjct: 95 QLQVLLLPKDPDDERGCFLEIRAGTGGDEAAIFAGDMFRMYSRYAEARRWKVEVMSASDG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKVSGEGVYGQLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAEM 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PEINAGDLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGLVVECQDERSQHKNK 267
>gi|88800296|ref|ZP_01115863.1| peptide chain release factor 1 [Reinekea blandensis MED297]
gi|88777011|gb|EAR08219.1| peptide chain release factor 1 [Reinekea sp. MED297]
Length = 361
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 175/267 (65%), Gaps = 5/267 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
+ Q++ + R L L++QP+ + + + ++E +L + + S + +I+
Sbjct: 5 IHQKLTELTERYEELGLLLSQPDVISDQTAFRQYSQEYAELENVVQCFSRYTACEADIEA 64
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
+ L+ + ED DM +M +EL A + L L LLPKD D ++ LEVRAGTG
Sbjct: 65 ARGLLDD--EDPDMREMGKDELASAEALREELDEQLQILLLPKDPNDHKNVYLEVRAGTG 122
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA++F+ D+F+MY RY++K GW+ EV+ +E + GYKE + +SG VY +LKFESG
Sbjct: 123 GDEAAIFSGDLFRMYSRYAEKMGWRVEVLSASEGEHGGYKEIISRLSGERVYSQLKFESG 182
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTT 301
HRVQRVP TE GR+HTSA +VA++P+ADE++ + + DLR+DT+R+ G+GGQH N T
Sbjct: 183 AHRVQRVPETESQGRIHTSACTVAVMPEADELESIEIDKNDLRVDTFRASGAGGQHVNKT 242
Query: 302 NSAVRVTHIPTGMTISIQDERSQHMVK 328
+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 243 DSAIRLTHLPTGIVVECQDERSQHKNK 269
>gi|420473478|ref|ZP_14972156.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
gi|393090606|gb|EJB91239.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|313202185|ref|YP_004040843.1| peptide chain release factor 1 [Methylovorus sp. MP688]
gi|312441501|gb|ADQ85607.1| peptide chain release factor 1 [Methylovorus sp. MP688]
Length = 356
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 140/197 (71%), Gaps = 1/197 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M A EE+ + + L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 67 DPEMKAFAQEEIEAGKARLEEIAMALQKLLLPKDPNDERNIFLEIRAGTGGDESALFAGD 126
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++ WK EVV +ES++ GYKE A I G G Y KLKFESG HRVQRVP T
Sbjct: 127 LFRMYSRYAERQRWKVEVVSASESEVGGYKEIIAKIEGFGAYSKLKFESGGHRVQRVPET 186
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA+LP+ DEV DV + D+RIDT+R+ G+GGQH N T+SAVR+TH P
Sbjct: 187 ETQGRIHTSACTVAVLPEVDEVSDVTINPADIRIDTFRASGAGGQHINKTDSAVRITHFP 246
Query: 312 TGMTISIQDERSQHMVK 328
TG+ + QD RSQH K
Sbjct: 247 TGIVVECQDGRSQHSNK 263
>gi|188587462|ref|YP_001919007.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229470350|sp|B2A3J0.1|RF1_NATTJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|179352149|gb|ACB86419.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 357
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 172/267 (64%), Gaps = 2/267 (0%)
Query: 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M ++ IE+R LE+L++ PE P + + +KE L + ++ + ++E +
Sbjct: 1 MLDKLEGIEKRYQELEDLMSDPEVINDPEKLKQYSKEHASLEEIVNKYRQYLETKQEFEE 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
K ++ E ED DM + +E+ ++ + + L LLPKD DE++ I+E+RAG G
Sbjct: 61 AKEMLEENDEDPDMEEFLKDEIPRLENQMQEIYDSLKILLLPKDPNDEKNVIVEIRAGAG 120
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA D+++MY RY++ WK E++ E D+ G+KE I G Y +LKFESG
Sbjct: 121 GDEAALFAADLYRMYTRYAEIMNWKTEIMDSHEKDMGGFKEIVFMIEGKNAYSRLKFESG 180
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTS +VA+LP+A++V++ + +LRIDT+ + G GGQ NTT
Sbjct: 181 VHRVQRVPSTESSGRIHTSTATVAVLPEAEDVEIEIDTNELRIDTFCATGPGGQSVNTTQ 240
Query: 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329
SAVR+TH PTG+ +S QDE+SQH +D
Sbjct: 241 SAVRITHEPTGVVVSCQDEKSQHKNRD 267
>gi|146277160|ref|YP_001167319.1| peptide chain release factor 1 [Rhodobacter sphaeroides ATCC 17025]
gi|166223594|sp|A4WRK0.1|RF1_RHOS5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|145555401|gb|ABP70014.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter
sphaeroides ATCC 17025]
Length = 351
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 160/224 (71%), Gaps = 13/224 (5%)
Query: 111 SELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL-CLAIDEEKRL--------QSLLLKS 161
+EL+ EI ++ + + +E + ML A E+ LA DE RL Q+L L +
Sbjct: 38 AELKPVVAEIAAYRTALEDLAEAEAML--ADPEMRALAEDELPRLRARIPEMEQALRL-A 94
Query: 162 LLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221
LLP+D AD R ILE+R GTGGEEA+LFA D+ +MY+RY++ +GW+FE++ + S+L G
Sbjct: 95 LLPRDAADARPAILEIRPGTGGEEAALFAGDLLRMYQRYAEAQGWRFELLDLAPSELGGI 154
Query: 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNE 281
+EA+A I G G + +LK+ESG+HRVQRVP TE GR+HTSA +VA+LP+A+EVD+ +
Sbjct: 155 REATARIEGEGAFARLKYESGVHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDIAIPAA 214
Query: 282 DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
D+RIDT RS G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 215 DIRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVT-SSEKSQH 257
>gi|420463061|ref|ZP_14961839.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
gi|393080589|gb|EJB81314.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+++ GYKE I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENNVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|171462958|ref|YP_001797071.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|238692839|sp|B1XSY0.1|RF1_POLNS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|171192496|gb|ACB43457.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 359
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/195 (53%), Positives = 144/195 (73%), Gaps = 1/195 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M + A EE A+ + L+S L K LLPKD+ DER+ LE+RAGTGG+E +LFA
Sbjct: 70 KDPEMKEFADEEQKQALATMEALESTLQKLLLPKDENDERNVFLEIRAGTGGDEGALFAG 129
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+ +MY R+++++GWK EVV ESDL GYKE + G VY +LKFESG HRVQRVP
Sbjct: 130 DLLRMYTRFAERQGWKVEVVSAAESDLGGYKEVVLRLVGQAVYSRLKFESGGHRVQRVPQ 189
Query: 252 TEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GR+HTSA +VA++P+ DE++ V++ +LRIDT+R+ G+GGQH N T+SA+R+TH+
Sbjct: 190 TETQGRIHTSACTVAVMPETDELEAVKINPAELRIDTFRASGAGGQHINKTDSAIRITHL 249
Query: 311 PTGMTISIQDERSQH 325
PTG + QD+RSQH
Sbjct: 250 PTGTVVECQDDRSQH 264
>gi|388455454|ref|ZP_10137749.1| peptide chain release factor 1 [Fluoribacter dumoffii Tex-KL]
Length = 362
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/195 (54%), Positives = 142/195 (72%), Gaps = 1/195 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+DK++ MA EEL A + L L L+PKD DER+ LE+RAGTGG+EA++F+
Sbjct: 72 DDKELASMAAEELEGAQKQLDELDEQLQWHLIPKDPDDERNVYLEIRAGTGGDEAAIFSG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+++MY RY + +GW+ E++ + + GYKE ISG VY +LKFESG HRVQRVP
Sbjct: 132 DLYRMYSRYVEDQGWQQELISASHGEHGGYKEIIVRISGQAVYSQLKFESGAHRVQRVPE 191
Query: 252 TEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VAI+P+ DE+ D+++ +DLRIDTYRS G+GGQH N T+SA+R+THI
Sbjct: 192 TESQGRVHTSACTVAIMPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHI 251
Query: 311 PTGMTISIQDERSQH 325
PTG+ + QDERSQH
Sbjct: 252 PTGVVVECQDERSQH 266
>gi|145639103|ref|ZP_01794711.1| peptide chain release factor 1 [Haemophilus influenzae PittII]
gi|145272075|gb|EDK11984.1| peptide chain release factor 1 [Haemophilus influenzae PittII]
gi|309751054|gb|ADO81038.1| Peptide chain release factor 1 [Haemophilus influenzae R2866]
Length = 361
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 10/238 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W EV+
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWSMEVL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ G+KE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SENESEQGGFKEIIVLVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH K
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNK 268
>gi|343510411|ref|ZP_08747644.1| peptide chain release factor 1 [Vibrio scophthalmi LMG 19158]
gi|342802324|gb|EGU37758.1| peptide chain release factor 1 [Vibrio scophthalmi LMG 19158]
Length = 362
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
+KE +L + + Q++++ + + E +D +M +MA EE+ A + +RL
Sbjct: 39 SKEYSQLEEVTKCFQAYQQAQEDLEAAEEMAKE--DDAEMREMAQEEIKDAKESIERLND 96
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD D+R+C LE+RAG GG+EA +FA ++F+MY ++++KKGW+ EV+ ES
Sbjct: 97 ELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNES 156
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ++G G YG LKFESG HRVQRVP TE GRVHTSA +VA++ + E D+
Sbjct: 157 EQGGYKEMIAKVTGDGAYGVLKFESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADL 216
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG + QDERSQH K
Sbjct: 217 PEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNK 269
>gi|386745600|ref|YP_006218817.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
gi|384551849|gb|AFI06797.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
Length = 352
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|347542961|ref|YP_004857598.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985997|dbj|BAK81672.1| peptide chain release factor 1 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 357
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 177/262 (67%), Gaps = 4/262 (1%)
Query: 65 MEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDG 122
M QR+ +E++ L ++ PE ++ E+ K ++ +L E + ++I+
Sbjct: 1 MLQRLDFLEQKYEELCIKISDPEVMSNQKEWQKLCRDHSELEVITLKYREYKKVLEDIEY 60
Query: 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182
KSL+ E EDK+ ++A EEL + + + +++ L LLPKD D ++ +E+RAGTG
Sbjct: 61 NKSLLDE--EDKEFRELAQEELKVLQNIKINIENELKILLLPKDPNDGKNVFVEIRAGTG 118
Query: 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESG 242
G+EA+LFA ++F+MY +Y + K WK E++ V ++D+ G+KE I G G Y KLK+ESG
Sbjct: 119 GDEAALFASNLFRMYSKYVENKRWKIEMISVNDTDIGGFKEVVFMIKGNGAYSKLKYESG 178
Query: 243 IHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302
+HRVQRVP TE SGR+HTSA +VA+LP+ D+VDV + DLRID +RS G+GGQ NTT+
Sbjct: 179 VHRVQRVPDTEASGRIHTSAATVAVLPEVDDVDVDINQNDLRIDVFRSSGNGGQSVNTTD 238
Query: 303 SAVRVTHIPTGMTISIQDERSQ 324
SAVR+THIP+G+ IS QDE+SQ
Sbjct: 239 SAVRITHIPSGIVISCQDEKSQ 260
>gi|268678716|ref|YP_003303147.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
gi|268616747|gb|ACZ11112.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
Length = 355
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 142/191 (74%)
Query: 140 ATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYER 199
A EEL L ++ L+ + LLPKD DER+ LE+RAGTGG+EA++FA D+FK Y R
Sbjct: 75 AKEELKLLEPHKEILEDEIKLLLLPKDPNDERNIFLEIRAGTGGDEAAIFAADLFKSYLR 134
Query: 200 YSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVH 259
Y++ +GWK EVV ++E L GYKE A I G G + +LK+E G+HRVQRVPLTE GRVH
Sbjct: 135 YAENRGWKVEVVSLSEGVLNGYKEVIALIKGQGAFSRLKYEGGVHRVQRVPLTESQGRVH 194
Query: 260 TSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319
TSAV+VA++P+ D+V+V ++ +DL+ID RS G+GGQ NTT+SAVR+TH+PTG+ + Q
Sbjct: 195 TSAVTVAVMPEVDDVEVDIQEKDLKIDVMRSSGNGGQSVNTTDSAVRITHLPTGIVVVNQ 254
Query: 320 DERSQHMVKDS 330
D +SQH KD+
Sbjct: 255 DGKSQHKNKDA 265
>gi|90581727|ref|ZP_01237514.1| peptide chain release factor 1 [Photobacterium angustum S14]
gi|90437081|gb|EAS62285.1| peptide chain release factor 1 [Vibrio angustum S14]
Length = 362
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D +M +MA EE+ A E +RL L L+PKD D+R+C +E+RAG GG+EA +FA
Sbjct: 72 DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY +Y++ +GW+ E++ S+ GYKE A ++G GVYG LKFESG HRVQRVP
Sbjct: 132 DLFRMYSKYAESRGWRIEIINENRSEQGGYKEMIAKVNGDGVYGILKFESGGHRVQRVPA 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA+LP+ E ++ + DL+IDT+R+ G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVLPEIPEAEIPEINAGDLKIDTFRASGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG+ + QDERSQH K
Sbjct: 252 PTGIVVECQDERSQHKNK 269
>gi|59711375|ref|YP_204151.1| peptide chain release factor 1 [Vibrio fischeri ES114]
gi|197334513|ref|YP_002155529.1| peptide chain release factor 1 [Vibrio fischeri MJ11]
gi|423685497|ref|ZP_17660305.1| peptide chain release factor 1 [Vibrio fischeri SR5]
gi|75431754|sp|Q5E6T3.1|RF1_VIBF1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238690273|sp|B5FBX0.1|RF1_VIBFM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|59479476|gb|AAW85263.1| peptide chain release factor RF-1 [Vibrio fischeri ES114]
gi|197316003|gb|ACH65450.1| peptide chain release factor 1 [Vibrio fischeri MJ11]
gi|371495409|gb|EHN71005.1| peptide chain release factor 1 [Vibrio fischeri SR5]
Length = 362
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 145/198 (73%), Gaps = 1/198 (0%)
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
+D++M +MA EE+ A + +RL L LLPKD DER+C LE+RAG GG+EA +FA
Sbjct: 72 DDEEMREMAQEEIKDAKEAIERLTDELQVLLLPKDPNDERNCFLEIRAGAGGDEAGIFAG 131
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
++F+MY R+++KKGW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP
Sbjct: 132 NLFRMYSRFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGEGAYGVLKFESGGHRVQRVPE 191
Query: 252 TEKSGRVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI 310
TE GRVHTSA +VA++ + E D+ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+
Sbjct: 192 TESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHL 251
Query: 311 PTGMTISIQDERSQHMVK 328
PTG + QDERSQH K
Sbjct: 252 PTGTVVECQDERSQHKNK 269
>gi|358451346|ref|ZP_09161780.1| peptide chain release factor 1 [Marinobacter manganoxydans MnI7-9]
gi|385330453|ref|YP_005884404.1| peptide chain release factor 1 [Marinobacter adhaerens HP15]
gi|311693603|gb|ADP96476.1| peptide chain release factor 1 [Marinobacter adhaerens HP15]
gi|357224579|gb|EHJ03110.1| peptide chain release factor 1 [Marinobacter manganoxydans MnI7-9]
Length = 362
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/194 (53%), Positives = 145/194 (74%), Gaps = 1/194 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D DM +MA EEL LA + + L L + +LPKD D ++ LE+RAGTGG+EA++FA D
Sbjct: 73 DADMREMAEEELQLAEQKSEELDEELQRLMLPKDPNDGKNVFLEIRAGTGGDEAAIFAGD 132
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++ W+ EV+ +E + G+KE A ++G GVYG LKFESG HRVQRVP T
Sbjct: 133 LFRMYLRYAERRRWQVEVLSESEGEHGGFKELIARVAGDGVYGALKFESGAHRVQRVPET 192
Query: 253 EKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE + + L DLR+DT+R+ G+GGQH N T+SA+R+TH+P
Sbjct: 193 ESQGRIHTSACTVAVMPEADEAEAIELNKADLRVDTFRASGAGGQHVNKTDSAIRITHLP 252
Query: 312 TGMTISIQDERSQH 325
TG+ + Q+ERSQH
Sbjct: 253 TGIVVECQEERSQH 266
>gi|418845138|ref|ZP_13399924.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392813947|gb|EJA69911.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
Length = 360
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 167/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q +I+ + ++ +D +M +MA EEL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQDDIETAQMML----DDPEMREMAQEELREAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E + GYKE A ISG GVYG+LKFESG HRVQRVP+TE GR+HTSA +VA++P+
Sbjct: 151 MSEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPVTESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|134294603|ref|YP_001118338.1| peptide chain release factor 1 [Burkholderia vietnamiensis G4]
gi|166223537|sp|A4JB50.1|RF1_BURVG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|134137760|gb|ABO53503.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia
vietnamiensis G4]
Length = 360
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 145/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A E + A + RL+ L K LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 67 ELLADASMRDFAEEAIRSARERMTRLEGELQKMLLPKDPNDDRNIFLEIRAGTGGDESAL 126
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQR
Sbjct: 127 FAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLKFESGGHRVQR 186
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 187 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 246
Query: 308 THIPTGMTISIQDERSQHMVKD 329
THIPTG+ + QD+RSQH KD
Sbjct: 247 THIPTGIVVECQDDRSQHKNKD 268
>gi|420428090|ref|ZP_14927125.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|420444709|ref|ZP_14943626.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|420454265|ref|ZP_14953099.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
gi|393045749|gb|EJB46729.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|393064329|gb|EJB65168.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|393068738|gb|EJB69540.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 163/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|385221579|ref|YP_005770712.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
gi|317010358|gb|ADU84105.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 164/244 (67%), Gaps = 3/244 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELC 145
S AE K+L +L I E+ T KE + I E E DK++ ++A EEL
Sbjct: 23 SSAEVVNDIKKLTELSKEQSSIEEISTASKEYLSVLENIKENKELLEDKELSELAKEELK 82
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 83 ALEIKKSELEATIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKK 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++V
Sbjct: 143 WKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH
Sbjct: 203 AIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQH 262
Query: 326 MVKD 329
KD
Sbjct: 263 KNKD 266
>gi|254000219|ref|YP_003052282.1| peptide chain release factor 1 [Methylovorus glucosetrophus SIP3-4]
gi|253986898|gb|ACT51755.1| peptide chain release factor 1 [Methylovorus glucosetrophus SIP3-4]
Length = 360
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 140/197 (71%), Gaps = 1/197 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M A EE+ + + L K LLPKD DER+ LE+RAGTGG+E++LFA D
Sbjct: 71 DPEMKAFAQEEIEAGKARLEEIAMALQKLLLPKDPNDERNIFLEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+F+MY RY++++ WK EVV +ES++ GYKE A I G G Y KLKFESG HRVQRVP T
Sbjct: 131 LFRMYSRYAERQRWKVEVVSASESEVGGYKEIIAKIEGFGAYSKLKFESGGHRVQRVPET 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA+LP+ DEV DV + D+RIDT+R+ G+GGQH N T+SAVR+TH P
Sbjct: 191 ETQGRIHTSACTVAVLPEVDEVSDVTISPADIRIDTFRASGAGGQHINKTDSAVRITHFP 250
Query: 312 TGMTISIQDERSQHMVK 328
TG+ + QD RSQH K
Sbjct: 251 TGIVVECQDGRSQHSNK 267
>gi|433537174|ref|ZP_20493674.1| peptide chain release factor 1 [Neisseria meningitidis 77221]
gi|432272370|gb|ELL27480.1| peptide chain release factor 1 [Neisseria meningitidis 77221]
Length = 358
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +EVRAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|420502046|ref|ZP_15000587.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
gi|393153326|gb|EJC53619.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 165/245 (67%), Gaps = 5/245 (2%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEEL 144
S AE K L +L I E+ KE ++G+K E EDK++ ++A EEL
Sbjct: 23 SSAEVISDIKRLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEEL 81
Query: 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKK 204
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 82 KILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLK 141
Query: 205 GWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVS 264
WK E+V +E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++
Sbjct: 142 KWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAIT 201
Query: 265 VAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQ 324
VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQ
Sbjct: 202 VAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQ 261
Query: 325 HMVKD 329
H KD
Sbjct: 262 HKNKD 266
>gi|89900074|ref|YP_522545.1| peptide chain release factor 1 [Rhodoferax ferrireducens T118]
gi|119361589|sp|Q21YY9.1|RF1_RHOFD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|89344811|gb|ABD69014.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodoferax
ferrireducens T118]
Length = 366
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 152/218 (69%), Gaps = 3/218 (1%)
Query: 114 RTKQKEID--GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADER 171
R +Q E D G + L+ +D DM MA EE+ A E ++L++ L + LLPKD D R
Sbjct: 54 RYQQLEADLSGAQELLRGSVDDPDMTAMAQEEIDNASAELQKLENELQRMLLPKDPDDAR 113
Query: 172 DCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231
+ +E+RAGTGG+E++LFA D+ +MY RY +++GWK E++ + S+L GYKE I G
Sbjct: 114 NAFVEIRAGTGGDESALFAADLLRMYTRYCERRGWKAEIISESPSELGGYKEVVIKIEGD 173
Query: 232 GVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRS 290
VYG LKFESG HRVQRVP+TE GR+HTSA +VA+L + DE V +++ DLRIDTYR+
Sbjct: 174 HVYGALKFESGGHRVQRVPVTETQGRIHTSACTVAVLAEPDEAVAIQINPADLRIDTYRA 233
Query: 291 GGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
G+GGQH N T+SAVR+TH+PTG+ QD RSQH K
Sbjct: 234 SGAGGQHINKTDSAVRITHLPTGIVAECQDGRSQHSNK 271
>gi|417790281|ref|ZP_12437847.1| peptide chain release factor 1 [Cronobacter sakazakii E899]
gi|429115863|ref|ZP_19176781.1| Peptide chain release factor 1 [Cronobacter sakazakii 701]
gi|449307988|ref|YP_007440344.1| peptide chain release factor 1 [Cronobacter sakazakii SP291]
gi|333955636|gb|EGL73373.1| peptide chain release factor 1 [Cronobacter sakazakii E899]
gi|426318992|emb|CCK02894.1| Peptide chain release factor 1 [Cronobacter sakazakii 701]
gi|449098021|gb|AGE86055.1| peptide chain release factor 1 [Cronobacter sakazakii SP291]
Length = 360
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R Q++++ + ++ D +M DMA +EL A + + L+
Sbjct: 39 SREYAQLSDVSRCFLEWRQVQEDMETARLML----SDPEMRDMAQDELLEAKAKSEALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ +EVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 ELQLLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGEGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PEINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|365134366|ref|ZP_09343245.1| peptide chain release factor 1 [Subdoligranulum sp. 4_3_54A2FAA]
gi|363614327|gb|EHL65824.1| peptide chain release factor 1 [Subdoligranulum sp. 4_3_54A2FAA]
Length = 360
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 149/216 (68%), Gaps = 7/216 (3%)
Query: 121 DGLKSLIYECSE--DKDMLDMATEELCLAIDEEKRLQSLLLKS-----LLPKDDADERDC 173
D K E E D+ LD +EL A EE + + L+ LLPKD+ D+R
Sbjct: 54 DAAKGAFDEAKEMLDEGGLDAEFKELAQAEYEENKEKMAFLEERLKILLLPKDENDDRSV 113
Query: 174 ILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGV 233
I+E+R G GGEEA+LFA +F+MY Y++ +GWK+EV+ E++L G KE S +I G G
Sbjct: 114 IVEIRGGAGGEEAALFAHSLFRMYTMYAETRGWKYEVLNANETELGGVKEVSFSIEGEGA 173
Query: 234 YGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGS 293
Y +LKFESG+HRVQRVP TE GRVHTS V+VA++P+A+EV++ + DL+IDT+RS G+
Sbjct: 174 YSRLKFESGVHRVQRVPETETQGRVHTSTVTVAVMPEAEEVEIDINPADLKIDTFRSSGA 233
Query: 294 GGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
GGQH N T+SA+RVTH+PTG+ + QDERSQ+ KD
Sbjct: 234 GGQHINKTSSAIRVTHLPTGVVVECQDERSQYKNKD 269
>gi|29655248|ref|NP_820940.1| peptide chain release factor 1 [Coxiella burnetii RSA 493]
gi|154706179|ref|YP_001425370.1| peptide chain release factor 1 [Coxiella burnetii Dugway 5J108-111]
gi|161830069|ref|YP_001596008.1| peptide chain release factor 1 [Coxiella burnetii RSA 331]
gi|165924041|ref|ZP_02219873.1| peptide chain release factor 1 [Coxiella burnetii Q321]
gi|212219474|ref|YP_002306261.1| peptide chain release factor 1 [Coxiella burnetii CbuK_Q154]
gi|30581025|sp|P47849.2|RF1_COXBU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039967|sp|A9KGY3.1|RF1_COXBN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039968|sp|A9N9K2.1|RF1_COXBR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238058710|sp|B6J625.1|RF1_COXB1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|29542520|gb|AAO91454.1| bacterial peptide chain release factor 1 (RF-1) [Coxiella burnetii
RSA 493]
gi|154355465|gb|ABS76927.1| bacterial peptide chain release factor 1 (RF-1) [Coxiella burnetii
Dugway 5J108-111]
gi|161761936|gb|ABX77578.1| peptide chain release factor 1 [Coxiella burnetii RSA 331]
gi|165916526|gb|EDR35130.1| peptide chain release factor 1 [Coxiella burnetii Q321]
gi|212013736|gb|ACJ21116.1| bacterial Peptide Chain Release Factor 1 (RF-1) [Coxiella burnetii
CbuK_Q154]
Length = 361
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + KE +L + + + +K I+ + + E +D ++ +A EEL +++
Sbjct: 35 YRELGKEYAQLEPIVKCFQQFQQNEKAIESAEEMQQE--KDPELRKLAEEELEQLTLKKE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L L+PKD DER+ LE+RAGTGG EA++FA D+F+MY RY++ KGW+ +V
Sbjct: 93 ELEDQLKLLLVPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A + G GVY +LKFESG HRVQRVP+TE GR+HTSA +VAI+P+ D
Sbjct: 153 AHEGEHGGFKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAIMPEVD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E+D +++ +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 213 EIDQIKINPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHKNK 269
>gi|385855707|ref|YP_005902220.1| peptide chain release factor 1 [Neisseria meningitidis M01-240355]
gi|421568170|ref|ZP_16013897.1| peptide chain release factor 1 [Neisseria meningitidis NM3001]
gi|325204648|gb|ADZ00102.1| peptide chain release factor 1 [Neisseria meningitidis M01-240355]
gi|402342289|gb|EJU77457.1| peptide chain release factor 1 [Neisseria meningitidis NM3001]
Length = 358
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 166/251 (66%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + + Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLRIDT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|59801687|ref|YP_208399.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA 1090]
gi|240017030|ref|ZP_04723570.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA6140]
gi|268604103|ref|ZP_06138270.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1]
gi|75432438|sp|Q5F750.1|RF1_NEIG1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|59718582|gb|AAW89987.1| putative peptide chain release factor I [Neisseria gonorrhoeae FA
1090]
gi|268588234|gb|EEZ52910.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1]
Length = 358
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 165/251 (65%), Gaps = 7/251 (2%)
Query: 81 NLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L+ QPEA+ Y K +E +L + + R Q ++ + ++ D +M D
Sbjct: 21 HLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQSDLADAEEML----SDPEMKD 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
A EE+ A + L + L K LLPKD D+++ +E+RAGTGG+EA+LFA D+ +MY
Sbjct: 77 FAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
RY+++ W+ E+V ES+L GYKE A I G+G Y +LKFESG HRVQRVP TE GR+
Sbjct: 137 RYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRI 196
Query: 259 HTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTIS 317
HTSA +VA++P+ADE+ D+ L DLR DT+R+ G+GGQH N T+SAVR+TH+PTGM +
Sbjct: 197 HTSACTVAVMPEADELEDIELNPADLRTDTFRASGAGGQHINKTDSAVRITHLPTGMVVE 256
Query: 318 IQDERSQHMVK 328
QD RSQH K
Sbjct: 257 CQDGRSQHANK 267
>gi|420469976|ref|ZP_14968687.1| peptide chain release factor 1 [Helicobacter pylori Hp H-11]
gi|393087022|gb|EJB87692.1| peptide chain release factor 1 [Helicobacter pylori Hp H-11]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK EVV +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|420466393|ref|ZP_14965150.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
gi|393084791|gb|EJB85479.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|420406208|ref|ZP_14905379.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
gi|393024229|gb|EJB25340.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 161/235 (68%), Gaps = 3/235 (1%)
Query: 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELCLAIDEEKRL 154
K+L +L I E+ KE + I E E DK++ ++A EEL + ++ L
Sbjct: 32 KKLTELSKEQSFIEEISVASKEYLSVLENIKENKELLEDKELSELAKEELKILETKKSDL 91
Query: 155 QSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214
++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V +
Sbjct: 92 ETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSS 151
Query: 215 ESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV 274
E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+V
Sbjct: 152 ENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDV 211
Query: 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 212 EVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|384887120|ref|YP_005761631.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
gi|261838950|gb|ACX98715.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
Length = 352
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V L DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|418425287|ref|ZP_12998381.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387717083|gb|EIK05109.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
Length = 358
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 174/255 (68%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ PE + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPEVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEEMLSE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ ++M EE E L+ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S ++SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|386752059|ref|YP_006225278.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
gi|384558317|gb|AFH98784.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|386750513|ref|YP_006223733.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
gi|384556771|gb|AFH97239.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 150/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|358053646|ref|ZP_09147382.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
gi|357256833|gb|EHJ07154.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
Length = 358
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 173/255 (67%), Gaps = 4/255 (1%)
Query: 72 IERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
+E R L L++ P+ + K +KE L+ ++ + + K++E+ ++ ++ E
Sbjct: 8 VEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRSYKAKKEELADIEDMLNE 67
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
++DK+ + M EE DE ++ L L+PKD D++D I+E+RA GG+EA++F
Sbjct: 68 -TDDKEEIAMLKEESSALKDEIPSIEEELKFLLIPKDPNDDKDVIVEIRAAAGGDEAAIF 126
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY +Y++ +G+K E+V +ESD GYKE S +SG G Y KLKFE+G HRVQRV
Sbjct: 127 AGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFQVSGHGAYSKLKFENGAHRVQRV 186
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309
P TE GR+HTS +VA+LP+ ++V++ +RNEDL+IDTYRS G+GGQH NTT+SAVR+TH
Sbjct: 187 PETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRITH 246
Query: 310 IPTGMTISIQDERSQ 324
+PTG+ I+ E+SQ
Sbjct: 247 LPTGV-IATSSEKSQ 260
>gi|296137058|ref|YP_003644300.1| peptide chain release factor 1 [Thiomonas intermedia K12]
gi|295797180|gb|ADG31970.1| peptide chain release factor 1 [Thiomonas intermedia K12]
Length = 358
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 172/260 (66%), Gaps = 7/260 (2%)
Query: 72 IERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE 129
++RR+ L+ L+ P+ A + +EL +L+ + L + + K +++ +SL+
Sbjct: 12 MQRRADELDALLAAPDCTADLQRFRNMTRELAELQAVVGLYVQYKAKTEDLSQAESLL-- 69
Query: 130 CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLF 189
D DM ++A +E+ A L++ L +LLP+D D R+ +E+RAGTGGEE++LF
Sbjct: 70 --SDPDMKELAQQEIQDARAALDALEAQLQVALLPRDPDDSRNVFVEIRAGTGGEESALF 127
Query: 190 AVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRV 249
A D+ +MY RY+++K W EV+ + SDL GYKE ++G G YG LK+ESG HRVQRV
Sbjct: 128 AADLLRMYARYAERKRWATEVISESPSDLGGYKEVILRVAGEGAYGLLKYESGGHRVQRV 187
Query: 250 PLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
P TE GR+HTSA +VA++P+ DE +++ DLRIDT+R+ G+GGQH N T+SA+R+T
Sbjct: 188 PKTETQGRIHTSAATVAVMPEMDEAQAIQINPSDLRIDTFRASGAGGQHINKTDSAIRIT 247
Query: 309 HIPTGMTISIQDERSQHMVK 328
H+PTG+ + QDERSQH K
Sbjct: 248 HLPTGLVVECQDERSQHRNK 267
>gi|188526883|ref|YP_001909570.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
gi|238691882|sp|B2URQ8.1|RF1_HELPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|188143123|gb|ACD47540.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 150/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|83720975|ref|YP_443437.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
gi|167582488|ref|ZP_02375362.1| peptide chain release factor 1 [Burkholderia thailandensis TXDOH]
gi|257137781|ref|ZP_05586043.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
gi|119361517|sp|Q2SUG2.1|RF1_BURTA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83654800|gb|ABC38863.1| peptide chain release factor 1 [Burkholderia thailandensis E264]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A + RL + L LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ + QD+RSQH KD
Sbjct: 251 TGIVVECQDDRSQHKNKD 268
>gi|217034576|ref|ZP_03439984.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
gi|216942931|gb|EEC22416.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|304397559|ref|ZP_07379436.1| peptide chain release factor 1 [Pantoea sp. aB]
gi|440758586|ref|ZP_20937746.1| Peptide chain release factor 1 [Pantoea agglomerans 299R]
gi|304354731|gb|EFM19101.1| peptide chain release factor 1 [Pantoea sp. aB]
gi|436427692|gb|ELP25369.1| Peptide chain release factor 1 [Pantoea agglomerans 299R]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQEAREKN 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E++
Sbjct: 90 DVLEQQLQVLLLPKDPDDERACFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWRVEII 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE A ++G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANEGEHGGYKEVIARVTGDGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|197120070|ref|YP_002140497.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem]
gi|197089430|gb|ACH40701.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem]
Length = 359
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 167/246 (67%), Gaps = 4/246 (1%)
Query: 81 NLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLD 138
+L++ PE + E+ K +KE L + + E + +ID K L+ E D++M +
Sbjct: 19 SLLSDPEVLGNQTEFRKLSKEHSGLAELVAAYREYKKILSDIDDNKELLKEP--DQEMRE 76
Query: 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYE 198
MA EL + L+ + LLPKD D+++ +LE+RAGTGG+E++LFA D+F+MY
Sbjct: 77 MAQAELLSLEARREVLEGEIKLLLLPKDPNDDKNVVLEIRAGTGGDESALFAGDLFRMYS 136
Query: 199 RYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRV 258
R+++ W+ E++ +ES+ G+KE A + G GV+ KLK+ESG HRVQRVP TE GR+
Sbjct: 137 RFAETNRWRVEIISASESEKGGFKEVIALVEGTGVFAKLKYESGTHRVQRVPETEAQGRI 196
Query: 259 HTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318
HTSA +VA++P+A++VD+ + DL+ID YRS G+GGQH NTT+SAVR+TH+PTG ++
Sbjct: 197 HTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAVRITHLPTGTVVAC 256
Query: 319 QDERSQ 324
Q+ERSQ
Sbjct: 257 QEERSQ 262
>gi|56476056|ref|YP_157645.1| peptide chain release factor 1 [Aromatoleum aromaticum EbN1]
gi|81598974|sp|Q5P7G7.1|RF1_AZOSE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56312099|emb|CAI06744.1| peptide chain release factor 1 (RF-1) [Aromatoleum aromaticum EbN1]
Length = 359
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 144/194 (74%), Gaps = 1/194 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M ++A EL + L++ L +LLP D +DER+ LEVRAGTGG+EASLFA D
Sbjct: 71 DAEMRELAESELETGAVRLQALEAELQCALLPCDPSDERNLFLEVRAGTGGDEASLFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ WK E+V + SDL GYKE I+G G Y KLKFESG HRVQR+P+T
Sbjct: 131 LLRMYTRYAERQRWKVEIVSSSPSDLGGYKEVILRIAGAGAYSKLKFESGGHRVQRIPVT 190
Query: 253 EKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADEV+ V + DLRIDT+R+ G+GGQH N T+SAVR+TH+P
Sbjct: 191 ETQGRIHTSACTVAVMPEADEVEAVNINPADLRIDTFRASGAGGQHINKTDSAVRITHLP 250
Query: 312 TGMTISIQDERSQH 325
TG+ + QD+RSQH
Sbjct: 251 TGIVVECQDDRSQH 264
>gi|420154949|ref|ZP_14661821.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
gi|394759930|gb|EJF42579.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 157/237 (66%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y++ KE + L + E + ++ ++ E +++M +M +EL A D+ +
Sbjct: 31 YAELMKEYKNLEPIVEKYREYLKAVQTVEDSTEMLGESGLEREMKEMIQQELDDAKDQVE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
R L LLP+D DER+ I+E+R G GGEEA+LF+ +F+MY Y+ ++GWK E++
Sbjct: 91 RTAEELKILLLPRDPNDERNVIMEIRGGAGGEEAALFSARLFRMYSMYATRRGWKTELLN 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
V E++L GYKE S I+G G Y +LK+ESG+HRVQRVP TE GR+HTS +VA+LP+ D
Sbjct: 151 VNETELGGYKEISFQITGDGAYSRLKYESGVHRVQRVPETETQGRIHTSTATVAVLPEVD 210
Query: 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
+V++ + DL+IDTYR+ G+GGQH N T SA+R+TH+PTG + QDERSQ KD
Sbjct: 211 DVEIEINPTDLQIDTYRASGAGGQHVNKTESAIRITHLPTGTVVECQDERSQFKNKD 267
>gi|420438109|ref|ZP_14937086.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
gi|393057484|gb|EJB58386.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 163/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|260779385|ref|ZP_05888277.1| peptide chain release factor 1 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605549|gb|EEX31844.1| peptide chain release factor 1 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 362
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 167/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q+++ + + E +D +M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMAKE--DDAEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAQETIERLNDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VAI+ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAIMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|623028|emb|CAA55563.1| unnamed protein product [Coxiella burnetii]
Length = 361
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y + KE +L + + + +K I+ + + E +D ++ +A EEL +++
Sbjct: 35 YRELGKEYAQLEPIVKCFQQFQQNEKAIESAEEMQQE--KDPELRKLAEEELEQLTLKKE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L L+PKD DER+ LE+RAGTGG EA++FA D+F+MY RY++ KGW+ +V
Sbjct: 93 ELEDQLNLLLVPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
E + G+KE A + G GVY +LKFESG HRVQRVP+TE GR+HTSA +VAI+P+ D
Sbjct: 153 AHEGEHGGFKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAIMPEVD 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E+D +++ +LRIDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 213 EIDQIKINPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHKNK 269
>gi|372273961|ref|ZP_09509997.1| peptide chain release factor 1 [Pantoea sp. SL1_M5]
gi|390433703|ref|ZP_10222241.1| peptide chain release factor 1 [Pantoea agglomerans IG1]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Query: 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
EY++ R RD + ++ T Q+ +D D +M DMA EEL A ++
Sbjct: 41 EYAQLTDVTRCFRDWQQVQEDIETAQQMLD-----------DPEMRDMAQEELQEAREKS 89
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
L+ L LLPKD DER C +EVRAGTGG+EA++FA D+F+MY RY++ + W+ E++
Sbjct: 90 DVLEQQLQVLLLPKDPDDERACFIEVRAGTGGDEAAIFAGDLFRMYSRYAEARRWRVEII 149
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
E + GYKE A ++G G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 150 SANEGEHGGYKEVIARVTGEGAYGRLKFESGGHRVQRVPETESQGRIHTSACTVAVMPEI 209
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DL+IDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 210 PEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|339999607|ref|YP_004730490.1| peptide chain release factor 1 (RF-1) [Salmonella bongori NCTC
12419]
gi|339512968|emb|CCC30712.1| peptide chain release factor 1 (RF-1) [Salmonella bongori NCTC
12419]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
+ ++E +L D ++ + Q +I+ + ++ +D +M +MA EEL A ++ +
Sbjct: 35 FRALSREYAQLSDVSRCFTDWQQVQDDIETAQQML----DDPEMREMAQEELREAKEKSE 90
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
+L+ L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++
Sbjct: 91 QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
++E + GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 MSEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
E ++ + DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 211 EAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|425788711|ref|YP_007016631.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
gi|425627026|gb|AFX90494.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/201 (51%), Positives = 149/201 (74%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E EDK++ ++A EEL + ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +
Sbjct: 66 ELLEDKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGI 125
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
F D+FK Y RY+ K WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQR
Sbjct: 126 FVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQR 185
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
VP TE GR+HTSA++VAI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+T
Sbjct: 186 VPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
Query: 309 HIPTGMTISIQDERSQHMVKD 329
H+PT +++S+QDE+SQH KD
Sbjct: 246 HLPTNISVSMQDEKSQHKNKD 266
>gi|425433306|ref|ZP_18813843.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
gi|410714191|gb|EKQ71672.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
Length = 352
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 163/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISVASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSE 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIVLIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V L DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|167620578|ref|ZP_02389209.1| peptide chain release factor 1 [Burkholderia thailandensis Bt4]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/198 (54%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D M D A +EL A + RL + L LLPKD DER+ +E+RAGTGG+E++LFA D
Sbjct: 71 DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIRAGTGGDESALFAGD 130
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+ +MY RY++++ W+ E++ + SDL GYKE I+G G Y +LKFESG HRVQRVP T
Sbjct: 131 LLRMYLRYAERQRWQVEMMSESASDLGGYKEVIVRIAGYGAYSRLKFESGGHRVQRVPAT 190
Query: 253 EKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
E GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRVTHIP
Sbjct: 191 ETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRVTHIP 250
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ + QD+RSQH KD
Sbjct: 251 TGIVVECQDDRSQHKNKD 268
>gi|343502220|ref|ZP_08740078.1| peptide chain release factor 1 [Vibrio tubiashii ATCC 19109]
gi|418479571|ref|ZP_13048649.1| peptide chain release factor 1 [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815197|gb|EGU50122.1| peptide chain release factor 1 [Vibrio tubiashii ATCC 19109]
gi|384572839|gb|EIF03347.1| peptide chain release factor 1 [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 362
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 168/253 (66%), Gaps = 5/253 (1%)
Query: 79 LENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDM 136
+++L+ P+ ++ +KE +L + + Q+++ + + E +D++M
Sbjct: 19 VQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMAKE--DDEEM 76
Query: 137 LDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKM 196
+MA EE+ A + +RL L LLPKD D+R+C LE+RAG GG+EA +FA D+F+M
Sbjct: 77 REMAQEEIKEAKETIERLNDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRM 136
Query: 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSG 256
Y ++++KKGW+ EV+ E++ GYKE A +SG G YG LKFESG HRVQRVP TE G
Sbjct: 137 YSKFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQG 196
Query: 257 RVHTSAVSVAILPQADEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMT 315
RVHTSA +VA++ + E ++ ++ DL+IDT+R+ G+GGQH NTT+SA+R+TH+PTG
Sbjct: 197 RVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTV 256
Query: 316 ISIQDERSQHMVK 328
+ QDERSQH K
Sbjct: 257 VECQDERSQHKNK 269
>gi|323527482|ref|YP_004229635.1| peptide chain release factor 1 [Burkholderia sp. CCGE1001]
gi|323384484|gb|ADX56575.1| peptide chain release factor 1 [Burkholderia sp. CCGE1001]
Length = 356
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/202 (53%), Positives = 144/202 (71%), Gaps = 1/202 (0%)
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E D M D A EE+ A D ++L L LLPKD D+R+ LE+RAGTGG+E++L
Sbjct: 63 ELLTDASMRDFAEEEIRAARDRMEQLGGELQTMLLPKDPNDDRNIFLEIRAGTGGDESAL 122
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+ +MY RY+++ W+ E++ +ESDL GYKE I+G Y KLKFESG HRVQR
Sbjct: 123 FAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRVQR 182
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ADE+ +V + DLRIDT+R+ G+GGQH N T+SAVRV
Sbjct: 183 VPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAVRV 242
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QD+RSQH KD
Sbjct: 243 THLPTGIVVECQDDRSQHKNKD 264
>gi|170768314|ref|ZP_02902767.1| peptide chain release factor 1 [Escherichia albertii TW07627]
gi|170123080|gb|EDS92011.1| peptide chain release factor 1 [Escherichia albertii TW07627]
Length = 360
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 165/233 (70%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D ++ + Q++I+ + ++ +D +M +MA +EL A ++ ++L+
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DERD LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQVLLLPKDPDDERDAFLEVRAGTGGDEAALFAGDLFRMYSRYAETRRWQVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|260881387|ref|ZP_05404264.2| peptide chain release factor 1 [Mitsuokella multacida DSM 20544]
gi|260849258|gb|EEX69265.1| peptide chain release factor 1 [Mitsuokella multacida DSM 20544]
Length = 360
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 179/268 (66%), Gaps = 9/268 (3%)
Query: 62 IKIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKE 119
+K + +++ A+E + LE+L++ PE A A++ KE L +I++ R ++
Sbjct: 1 MKSVLEKLQAVEDKYRELESLISDPETMADMAKWQAYTKEHAAL---TPIITKFRRYKEV 57
Query: 120 IDGL---KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILE 176
+ G+ KS++ E D +M EL +++++ L L LLPKD DE++ I+E
Sbjct: 58 LKGIEEAKSMLGEAL-DHEMHAFVESELADLMEQKEALDKELPILLLPKDPNDEKNVIVE 116
Query: 177 VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236
+R G GGEEA+LFA D+F+MY RY++KKGWK E++ +++ G+KE + ++G G Y
Sbjct: 117 IRGGVGGEEAALFAGDLFRMYSRYAEKKGWKVELMDANATEIGGFKEVTFMVTGYGAYSY 176
Query: 237 LKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQ 296
LK+ESG HRVQRVP+TE GR+HTSA +VA+LP+A++VDV + DLRIDTY + G+GGQ
Sbjct: 177 LKYESGTHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDVAINPADLRIDTYCASGAGGQ 236
Query: 297 HANTTNSAVRVTHIPTGMTISIQDERSQ 324
+ N T +A+R+TH+PTG+ + QDE+SQ
Sbjct: 237 YVNRTETAIRITHLPTGIVVQCQDEKSQ 264
>gi|421720741|ref|ZP_16160021.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
gi|407219333|gb|EKE89150.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
Length = 352
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 164/236 (69%), Gaps = 5/236 (2%)
Query: 98 KELRKLRDSMHLISELRTKQKE----IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153
K+L +L I E+ KE ++G+K E EDK++ ++A EEL + ++
Sbjct: 32 KKLTELSKEQSSIEEISIASKEYLSVLEGIKE-NKELLEDKELSELAKEELKILEIQKSD 90
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGV 213
L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K WK E+V
Sbjct: 91 LETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSS 150
Query: 214 TESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273
+E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++VAI+P+ D+
Sbjct: 151 SENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDD 210
Query: 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329
V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH KD
Sbjct: 211 VEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKD 266
>gi|383791013|ref|YP_005475587.1| peptide chain release factor 1 [Spirochaeta africana DSM 8902]
gi|383107547|gb|AFG37880.1| peptide chain release factor 1 [Spirochaeta africana DSM 8902]
Length = 356
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 166/252 (65%), Gaps = 3/252 (1%)
Query: 75 RSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE 132
R + +E L+ PE PA + + +E +L + + +E R +++ + L+ E +
Sbjct: 13 RHSEVEKLIADPELHKDPARFKELMREHSQLCELVEAYAEYRDTSQQLQDNRELLNE-EK 71
Query: 133 DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVD 192
D +M +MA EL + L L L+P+D DE+ I+E+RAGTGG+EA LFA D
Sbjct: 72 DPEMREMAKAELDELEQRSEELTKQLRLLLVPRDPMDEKSAIIEIRAGTGGDEAGLFAAD 131
Query: 193 VFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252
+++MY RY ++ G KFE + V ES++ G+KE + SG YG L+FESG+HRVQRVP T
Sbjct: 132 LYRMYARYGERHGLKFEFITVNESEIGGFKEVVFSASGKNAYGSLRFESGVHRVQRVPAT 191
Query: 253 EKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312
E GR+HTSAV+VA+LP+A++ D++L + +L+ID +RS G GGQ NTT+SAVR+TH+PT
Sbjct: 192 ESGGRIHTSAVTVAVLPEAEDTDIQLHDNELKIDVFRSSGPGGQSVNTTDSAVRITHLPT 251
Query: 313 GMTISIQDERSQ 324
++ QDE+SQ
Sbjct: 252 STVVTCQDEKSQ 263
>gi|385216848|ref|YP_005778324.1| peptide chain release factor 1 [Helicobacter pylori F16]
gi|317176897|dbj|BAJ54686.1| peptide chain release factor 1 [Helicobacter pylori F16]
Length = 352
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 164/244 (67%), Gaps = 3/244 (1%)
Query: 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE---DKDMLDMATEELC 145
S AE K+L +L I E+ KE + I E E DK++ ++A EEL
Sbjct: 23 SSAEVISDIKKLTELSKEQSFIEEISITSKEYLSVLENIKENKELLEDKELSELAKEELK 82
Query: 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKG 205
+ ++ L++ + + L+PKD D+++ LE+RAGTGG+EA +F D+FK Y RY+ K
Sbjct: 83 ILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKK 142
Query: 206 WKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSV 265
WK E+V +E+ + GYKE A I G GVY +LKFE+G HRVQRVP TE GR+HTSA++V
Sbjct: 143 WKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITV 202
Query: 266 AILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
AI+P+ D+V+V + DL+I+ +R+GG GGQ NTT+SAVR+TH+PT +++S+QDE+SQH
Sbjct: 203 AIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQH 262
Query: 326 MVKD 329
KD
Sbjct: 263 KNKD 266
>gi|99080782|ref|YP_612936.1| peptide chain release factor 1 [Ruegeria sp. TM1040]
gi|119361610|sp|Q1GI42.1|RF1_SILST RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|99037062|gb|ABF63674.1| bacterial peptide chain release factor 1 (bRF-1) [Ruegeria sp.
TM1040]
Length = 350
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 157/221 (71%), Gaps = 7/221 (3%)
Query: 111 SELRTKQKEIDGLKSLIYECSE------DKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164
S+LR ++I + L+ + +E D DM +A EE+ + + L +LLP
Sbjct: 37 SDLRPVVEQISAYQQLLSDLAEAEEMLADPDMKALAEEEIPTLKAALPQAEHALQLALLP 96
Query: 165 KDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224
KD+AD R ILE+R GTGG+EA+LFA D+++MY RY++ +GWK +V+ S+L G KE
Sbjct: 97 KDEADSRAAILEIRPGTGGDEAALFAADLYRMYSRYAETQGWKVDVIEEQASELGGLKEL 156
Query: 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLR 284
A I+G GV+ +LK+ESG+HRVQRVP+TE GR+HTSA +VA+LP+A++VD+++ DLR
Sbjct: 157 VARINGDGVFARLKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKIDANDLR 216
Query: 285 IDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
IDT R+ G+GGQH NTT+SAVR+TH+PTG+ ++ E+SQH
Sbjct: 217 IDTMRASGAGGQHVNTTDSAVRITHLPTGLVVT-SSEKSQH 256
>gi|429085189|ref|ZP_19148168.1| Peptide chain release factor 1 [Cronobacter condimenti 1330]
gi|426545653|emb|CCJ74209.1| Peptide chain release factor 1 [Cronobacter condimenti 1330]
Length = 360
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156
++E +L D E R Q++++ + ++ D +M DMA +EL A ++ + L+
Sbjct: 39 SREYAQLSDVSRCFLEWRQVQEDMETARLML----SDPEMRDMAQDELLEAKEKSEALEQ 94
Query: 157 LLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTES 216
L LLPKD DER+ LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ +E
Sbjct: 95 QLQLLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAESRRWRVEIMSASEG 154
Query: 217 DLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDV 276
+ GYKE A ISG G YG+LKFESG HRVQRVP TE GR+HTSA +VA++P+ E ++
Sbjct: 155 EHGGYKEVIAKISGDGAYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEL 214
Query: 277 -RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVK 328
+ DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ + QDERSQH K
Sbjct: 215 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
>gi|423205686|ref|ZP_17192242.1| peptide chain release factor 1 [Aeromonas veronii AMC34]
gi|404623077|gb|EKB19929.1| peptide chain release factor 1 [Aeromonas veronii AMC34]
Length = 362
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 158/234 (67%), Gaps = 3/234 (1%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
Y +E +L D +H R Q +++ + ++ E +D D+ +MA EEL LA +
Sbjct: 35 YRALTREYAQLEDIVHAFQRFRQAQDDLETTQMMLEE--DDADLREMAQEELPLAKANLE 92
Query: 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
L+ L LLPKD D+ +C LE+RAG GG+EA++FA D+F+MY R+++++GW+ +V
Sbjct: 93 ALEQELQLMLLPKDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRFAERQGWRVSIVS 152
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
+ + GYKE A I G VYG+LKFESG HRVQRVP TE GRVHTSA +VA+LP+
Sbjct: 153 CNDGEYGGYKEVIAKIDGERVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVP 212
Query: 273 EVD-VRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E + + + DL+IDT+R+ G+GGQH N T+SA+R+TH+PTG+ + QDERSQH
Sbjct: 213 EAEQIEINPADLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQH 266
>gi|365856781|ref|ZP_09396791.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
gi|363717524|gb|EHM00896.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
Length = 351
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 162/238 (68%), Gaps = 4/238 (1%)
Query: 88 ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLA 147
A A+ +EL +L + + ELR ++ D ++L+ D +M ++A E
Sbjct: 24 ADGAKVGAIARELSELDPLVEKVGELRAAERARDEAEALMA----DPEMRELAESEFYAQ 79
Query: 148 IDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK 207
D L+ L LLPKD ADE + ILE+R GG+EA LFA ++F Y+RY+ +GW+
Sbjct: 80 RDAVPVLERELRLMLLPKDAADEGNAILEIRPAAGGDEAGLFAGELFGAYQRYAATRGWR 139
Query: 208 FEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAI 267
FEV+ ES++ G K A+A + G GV+ +LKFESG+HRVQRVP TE GR+HTS V+VA+
Sbjct: 140 FEVLDYDESEVGGIKGATAEVQGRGVFARLKFESGVHRVQRVPATETQGRIHTSTVTVAV 199
Query: 268 LPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
LP+A+EVDV++ DLRIDTYR+ G+GGQH N T+SAVR+THIP+G+ +++Q+ERSQH
Sbjct: 200 LPEAEEVDVQINESDLRIDTYRASGAGGQHVNKTDSAVRITHIPSGVVVAMQEERSQH 257
>gi|145629736|ref|ZP_01785532.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21]
gi|144978073|gb|EDJ87852.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21]
Length = 267
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 159/235 (67%), Gaps = 10/235 (4%)
Query: 93 YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE-E 151
YSK +L ++ + ++L +E + ++ + E K+M M EE I+E E
Sbjct: 39 YSKEYSQLEEVVKCFNRWTQLNQNIEEAE----ILLDDPEMKEMAQMEIEESKAEIEEVE 94
Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
++LQ LLL PKD DE +C LE+RAGTGG+EA +FA D+F+MY RY++ K W EV+
Sbjct: 95 QQLQILLL----PKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWSMEVL 150
Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
ES+ G+KE +SG GVYG+LKFESG HRVQRVP TE GR+HTSA +VA++P+
Sbjct: 151 SENESEQGGFKEIIVLVSGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPEL 210
Query: 272 DEVDV-RLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQH 325
E ++ + DLRIDTYRS G+GGQH NTT+SAVR+THIPTG+ + QDERSQH
Sbjct: 211 PESEMPEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQH 265
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,851,583,442
Number of Sequences: 23463169
Number of extensions: 194568504
Number of successful extensions: 605142
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8319
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 589738
Number of HSP's gapped (non-prelim): 8966
length of query: 330
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 188
effective length of database: 9,027,425,369
effective search space: 1697155969372
effective search space used: 1697155969372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)