Query 020135
Match_columns 330
No_of_seqs 249 out of 1556
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 7E-96 2E-100 700.7 30.1 266 64-330 4-272 (363)
2 TIGR00019 prfA peptide chain r 100.0 7E-81 1.5E-85 608.8 33.5 264 64-329 4-269 (360)
3 PRK00591 prfA peptide chain re 100.0 3.9E-80 8.4E-85 603.8 33.6 266 63-329 2-269 (359)
4 TIGR00020 prfB peptide chain r 100.0 1.7E-78 3.6E-83 593.2 32.4 258 68-330 24-284 (364)
5 PRK00578 prfB peptide chain re 100.0 5.1E-78 1.1E-82 590.6 31.0 257 68-329 24-283 (367)
6 PRK06746 peptide chain release 100.0 9E-78 1.9E-82 579.4 29.5 242 83-329 1-245 (326)
7 PRK05589 peptide chain release 100.0 3.9E-77 8.5E-82 575.5 29.5 242 83-330 1-245 (325)
8 PRK07342 peptide chain release 100.0 2.4E-76 5.2E-81 572.0 28.8 243 82-329 2-247 (339)
9 PRK08787 peptide chain release 100.0 3.3E-73 7.2E-78 544.4 26.0 222 103-329 2-224 (313)
10 KOG2726 Mitochondrial polypept 100.0 2.7E-71 5.8E-76 539.8 26.7 228 102-330 68-297 (386)
11 COG1186 PrfB Protein chain rel 100.0 9.8E-61 2.1E-65 442.5 14.3 157 173-329 1-158 (239)
12 PRK08179 prfH peptide chain re 100.0 1.5E-56 3.3E-61 407.4 16.9 152 173-329 2-155 (200)
13 TIGR03072 release_prfH putativ 100.0 2.8E-56 6.1E-61 405.7 18.0 152 173-329 1-154 (200)
14 PF03462 PCRF: PCRF domain; I 100.0 1.2E-33 2.5E-38 237.1 13.0 112 129-240 4-115 (115)
15 PF00472 RF-1: RF-1 domain; I 99.9 3.8E-24 8.3E-29 179.2 4.5 57 273-329 4-60 (113)
16 PRK09256 hypothetical protein; 99.8 2.8E-19 6E-24 155.0 4.8 55 275-329 7-85 (138)
17 KOG3429 Predicted peptidyl-tRN 99.1 6.5E-11 1.4E-15 104.8 4.1 55 275-329 34-113 (172)
18 PRK10636 putative ABC transpor 88.2 2.2 4.8E-05 45.5 8.9 56 63-118 566-626 (638)
19 PF10458 Val_tRNA-synt_C: Valy 86.1 2.4 5.1E-05 32.2 5.6 58 62-119 6-64 (66)
20 PF08317 Spc7: Spc7 kinetochor 86.1 17 0.00037 35.7 13.1 23 190-212 278-300 (325)
21 PRK10884 SH3 domain-containing 82.7 13 0.00028 34.6 10.0 84 64-163 90-174 (206)
22 PRK11546 zraP zinc resistance 81.7 13 0.00027 33.0 9.0 50 57-106 55-104 (143)
23 PRK11147 ABC transporter ATPas 81.5 5.9 0.00013 42.1 8.3 44 62-105 570-616 (635)
24 PRK10869 recombination and rep 80.7 36 0.00078 36.0 13.6 47 65-111 270-316 (553)
25 COG5491 VPS24 Conserved protei 79.2 22 0.00048 33.2 10.2 59 63-121 48-112 (204)
26 TIGR00634 recN DNA repair prot 78.9 91 0.002 32.9 19.8 135 72-230 282-428 (563)
27 PF15188 CCDC-167: Coiled-coil 78.0 15 0.00032 29.9 7.6 50 62-111 7-56 (85)
28 COG0497 RecN ATPase involved i 76.8 1.1E+02 0.0024 32.8 18.2 95 61-155 267-362 (557)
29 KOG2129 Uncharacterized conser 76.0 45 0.00098 34.6 12.1 94 59-155 200-309 (552)
30 PTZ00419 valyl-tRNA synthetase 74.9 11 0.00023 42.6 8.2 63 59-121 928-991 (995)
31 TIGR03545 conserved hypothetic 74.6 25 0.00055 37.4 10.4 18 183-200 287-304 (555)
32 KOG0995 Centromere-associated 71.8 64 0.0014 34.6 12.4 91 65-161 233-327 (581)
33 PF08317 Spc7: Spc7 kinetochor 71.7 62 0.0013 31.8 11.8 64 92-155 164-229 (325)
34 PF12777 MT: Microtubule-bindi 70.7 14 0.00031 36.5 7.1 51 76-126 172-222 (344)
35 PRK03918 chromosome segregatio 70.4 76 0.0017 34.7 13.3 34 71-106 567-600 (880)
36 smart00787 Spc7 Spc7 kinetocho 69.3 97 0.0021 30.6 12.5 22 190-211 273-294 (312)
37 COG1579 Zn-ribbon protein, pos 69.2 1.1E+02 0.0024 29.3 13.0 21 191-211 174-195 (239)
38 PLN02943 aminoacyl-tRNA ligase 68.6 14 0.00031 41.6 7.3 61 60-120 889-950 (958)
39 PLN02381 valyl-tRNA synthetase 67.0 20 0.00044 40.9 8.2 63 59-121 996-1059(1066)
40 PRK09039 hypothetical protein; 65.5 1.5E+02 0.0033 29.5 13.8 61 66-126 87-152 (343)
41 COG1196 Smc Chromosome segrega 64.9 1.5E+02 0.0032 34.2 14.6 116 133-252 1004-1157(1163)
42 PLN02678 seryl-tRNA synthetase 64.5 1.8E+02 0.004 30.2 14.1 24 139-162 82-105 (448)
43 PHA02562 46 endonuclease subun 64.3 1.3E+02 0.0028 31.0 12.9 98 59-159 298-403 (562)
44 PF08700 Vps51: Vps51/Vps67; 63.4 67 0.0015 24.7 9.7 37 84-120 2-38 (87)
45 COG5570 Uncharacterized small 63.1 37 0.00081 25.4 6.2 45 65-109 3-51 (57)
46 PRK05729 valS valyl-tRNA synth 62.7 21 0.00046 39.7 7.2 70 46-115 797-867 (874)
47 PF15035 Rootletin: Ciliary ro 62.7 89 0.0019 28.5 10.1 27 60-86 16-42 (182)
48 KOG0971 Microtubule-associated 61.6 99 0.0022 35.2 11.7 61 98-161 287-351 (1243)
49 PF13710 ACT_5: ACT domain; PD 60.3 23 0.00051 26.5 5.0 38 194-231 6-43 (63)
50 PF06160 EzrA: Septation ring 59.7 1.7E+02 0.0037 31.0 13.0 97 61-169 345-441 (560)
51 PLN02742 Probable galacturonos 59.5 1.3E+02 0.0029 32.0 11.9 19 51-69 64-83 (534)
52 PF03962 Mnd1: Mnd1 family; I 59.1 1.4E+02 0.0031 27.2 12.0 26 134-159 102-127 (188)
53 PF03962 Mnd1: Mnd1 family; I 58.6 1.1E+02 0.0024 27.9 10.0 95 58-155 60-155 (188)
54 COG1340 Uncharacterized archae 57.3 2.1E+02 0.0045 28.4 13.0 38 72-109 112-149 (294)
55 PRK05431 seryl-tRNA synthetase 57.1 2.3E+02 0.0051 29.0 13.6 71 89-162 26-100 (425)
56 PF04350 PilO: Pilus assembly 56.7 58 0.0013 27.2 7.4 42 191-232 53-97 (144)
57 PF01544 CorA: CorA-like Mg2+ 56.4 1.2E+02 0.0026 27.9 10.2 24 61-84 119-142 (292)
58 KOG3274 Uncharacterized conser 55.9 7.5 0.00016 36.1 1.9 109 194-309 76-184 (210)
59 KOG1760 Molecular chaperone Pr 55.6 1.4E+02 0.0031 26.1 10.3 70 89-158 18-104 (131)
60 PRK00578 prfB peptide chain re 55.3 1.5E+02 0.0032 30.2 11.1 15 67-81 7-21 (367)
61 PF11553 DUF3231: Protein of u 54.1 97 0.0021 27.1 8.7 60 104-164 17-76 (166)
62 PF14257 DUF4349: Domain of un 54.1 68 0.0015 30.2 8.1 59 91-156 132-190 (262)
63 PRK11637 AmiB activator; Provi 53.8 1.5E+02 0.0032 30.0 11.0 21 65-85 45-65 (428)
64 KOG0804 Cytoplasmic Zn-finger 53.5 2.9E+02 0.0064 29.1 13.1 60 103-163 384-449 (493)
65 PRK04778 septation ring format 52.5 1.3E+02 0.0027 31.9 10.6 50 61-110 166-217 (569)
66 PF07426 Dynactin_p22: Dynacti 52.4 1.8E+02 0.004 26.3 10.8 60 68-127 6-70 (174)
67 PF12761 End3: Actin cytoskele 52.0 1.9E+02 0.0042 26.9 10.4 41 116-159 144-184 (195)
68 PF09537 DUF2383: Domain of un 51.7 1.2E+02 0.0025 24.5 8.2 79 106-202 2-80 (111)
69 COG0598 CorA Mg2+ and Co2+ tra 51.1 2.4E+02 0.0053 27.4 12.1 45 61-110 148-192 (322)
70 PRK02224 chromosome segregatio 51.1 2.1E+02 0.0045 31.5 12.4 25 60-84 468-492 (880)
71 KOG2129 Uncharacterized conser 50.8 2.1E+02 0.0046 29.9 11.3 11 179-189 241-251 (552)
72 PF05591 DUF770: Protein of un 50.7 75 0.0016 28.5 7.4 58 87-144 98-155 (157)
73 TIGR00383 corA magnesium Mg(2+ 50.6 2.1E+02 0.0046 27.3 11.1 22 65-86 147-168 (318)
74 PF10146 zf-C4H2: Zinc finger- 50.2 2.2E+02 0.0047 27.1 10.8 58 107-164 49-111 (230)
75 PRK04778 septation ring format 49.8 2.7E+02 0.0059 29.5 12.6 31 139-169 415-445 (569)
76 TIGR01069 mutS2 MutS2 family p 49.7 3.1E+02 0.0068 30.4 13.4 25 136-160 566-590 (771)
77 PRK06737 acetolactate synthase 49.5 47 0.001 26.2 5.2 39 194-232 16-54 (76)
78 PRK11152 ilvM acetolactate syn 49.3 38 0.00082 26.7 4.7 43 194-236 17-59 (76)
79 PF12128 DUF3584: Protein of u 49.3 3.4E+02 0.0074 31.5 14.2 53 71-123 747-803 (1201)
80 KOG4603 TBP-1 interacting prot 48.6 2.3E+02 0.0049 26.3 10.2 63 91-161 79-142 (201)
81 TIGR02231 conserved hypothetic 48.5 2.6E+02 0.0057 29.0 12.1 42 139-181 149-190 (525)
82 PF13801 Metal_resist: Heavy-m 48.0 1.1E+02 0.0024 24.0 7.4 38 70-107 66-103 (125)
83 TIGR03185 DNA_S_dndD DNA sulfu 48.0 2.7E+02 0.0059 29.9 12.4 41 65-106 396-436 (650)
84 TIGR00414 serS seryl-tRNA synt 47.9 3.2E+02 0.007 27.9 14.0 25 138-162 79-103 (418)
85 TIGR02284 conserved hypothetic 47.4 1.6E+02 0.0034 25.4 8.7 53 108-160 3-55 (139)
86 COG1579 Zn-ribbon protein, pos 46.6 2.7E+02 0.0059 26.7 11.2 34 68-102 67-100 (239)
87 TIGR00020 prfB peptide chain r 45.6 2.6E+02 0.0057 28.4 11.2 14 67-80 7-20 (364)
88 COG4026 Uncharacterized protei 44.9 2.2E+02 0.0048 27.5 9.8 44 138-183 166-209 (290)
89 PRK04863 mukB cell division pr 44.8 1E+02 0.0022 36.9 9.1 91 111-201 414-509 (1486)
90 COG0216 PrfA Protein chain rel 44.8 97 0.0021 31.4 7.8 17 138-154 86-102 (363)
91 PRK09546 zntB zinc transporter 44.8 3E+02 0.0065 26.6 11.7 47 61-107 151-198 (324)
92 PLN02320 seryl-tRNA synthetase 44.6 3.5E+02 0.0075 28.8 12.2 25 138-162 140-164 (502)
93 KOG1318 Helix loop helix trans 43.4 1.8E+02 0.0039 30.1 9.7 57 67-127 243-299 (411)
94 KOG4360 Uncharacterized coiled 43.1 2.2E+02 0.0047 30.5 10.3 10 287-296 469-478 (596)
95 KOG1489 Predicted GTP-binding 42.2 90 0.0019 31.6 7.1 105 173-295 45-161 (366)
96 KOG0994 Extracellular matrix g 41.6 4.1E+02 0.0089 31.5 12.6 37 65-101 1466-1502(1758)
97 PF15605 Toxin_52: Putative to 41.4 1.9E+02 0.0041 24.4 7.8 52 60-111 47-98 (103)
98 PF09032 Siah-Interact_N: Siah 40.8 87 0.0019 25.1 5.6 42 114-156 6-47 (79)
99 KOG3215 Uncharacterized conser 40.8 1.7E+02 0.0037 27.7 8.3 15 10-24 21-35 (222)
100 KOG2509 Seryl-tRNA synthetase 40.0 1.2E+02 0.0027 31.6 7.9 71 89-162 46-116 (455)
101 PF08657 DASH_Spc34: DASH comp 39.8 3.5E+02 0.0077 26.1 10.6 87 72-159 162-256 (259)
102 PRK13562 acetolactate synthase 39.8 74 0.0016 25.8 5.1 37 196-232 18-55 (84)
103 PTZ00446 vacuolar sorting prot 39.8 2.3E+02 0.0051 26.2 9.0 23 139-163 165-187 (191)
104 PF10805 DUF2730: Protein of u 39.5 2.2E+02 0.0047 23.5 9.0 63 61-128 36-99 (106)
105 KOG0996 Structural maintenance 39.3 5.4E+02 0.012 30.4 13.2 40 71-110 838-877 (1293)
106 PF02815 MIR: MIR domain; Int 39.3 47 0.001 29.6 4.3 38 286-323 122-159 (190)
107 PF14257 DUF4349: Domain of un 39.1 1.6E+02 0.0034 27.7 8.1 61 57-119 130-190 (262)
108 COG4477 EzrA Negative regulato 38.8 4.5E+02 0.0097 28.3 11.8 31 139-169 414-444 (570)
109 COG4942 Membrane-bound metallo 38.7 3.1E+02 0.0068 28.5 10.5 63 62-127 33-96 (420)
110 PLN03229 acetyl-coenzyme A car 38.1 2.1E+02 0.0046 31.8 9.7 13 149-161 695-707 (762)
111 PF12685 SpoIIIAH: SpoIIIAH-li 37.9 2.9E+02 0.0062 25.1 9.3 49 60-108 87-135 (196)
112 PRK09039 hypothetical protein; 37.7 4E+02 0.0086 26.6 11.0 19 67-85 46-64 (343)
113 PF00587 tRNA-synt_2b: tRNA sy 36.9 1.3E+02 0.0028 26.1 6.7 49 180-229 118-167 (173)
114 PF07888 CALCOCO1: Calcium bin 36.7 4.5E+02 0.0097 28.3 11.6 85 68-161 372-457 (546)
115 KOG1086 Cytosolic sorting prot 36.6 2.5E+02 0.0055 29.6 9.4 52 103-154 208-266 (594)
116 PRK06342 transcription elongat 36.4 89 0.0019 27.9 5.6 54 89-163 32-85 (160)
117 PF07851 TMPIT: TMPIT-like pro 36.4 1.7E+02 0.0036 29.4 8.0 40 132-180 65-104 (330)
118 PF03915 AIP3: Actin interacti 35.9 5.2E+02 0.011 26.8 13.2 86 67-155 220-319 (424)
119 COG1196 Smc Chromosome segrega 35.8 3.5E+02 0.0076 31.3 11.5 39 68-106 187-228 (1163)
120 PF15188 CCDC-167: Coiled-coil 35.8 1.8E+02 0.0039 23.7 6.7 59 97-161 4-62 (85)
121 PF04912 Dynamitin: Dynamitin 35.7 4.7E+02 0.01 26.2 13.3 98 57-157 258-365 (388)
122 TIGR03545 conserved hypothetic 35.6 3E+02 0.0064 29.5 10.2 26 58-83 162-187 (555)
123 PF09755 DUF2046: Uncharacteri 35.2 4.7E+02 0.01 26.1 13.7 28 134-161 177-204 (310)
124 PF00261 Tropomyosin: Tropomyo 34.6 3.8E+02 0.0083 24.9 13.2 23 137-159 192-214 (237)
125 KOG0432 Valyl-tRNA synthetase 34.4 1.4E+02 0.003 33.9 7.6 74 13-88 883-958 (995)
126 PF03310 Cauli_DNA-bind: Cauli 34.0 2.4E+02 0.0053 24.4 7.6 60 103-162 5-67 (121)
127 PF09418 DUF2009: Protein of u 33.8 2.3E+02 0.005 29.7 8.7 60 173-252 241-315 (458)
128 PF06160 EzrA: Septation ring 33.6 6.1E+02 0.013 26.9 13.0 54 61-114 162-217 (560)
129 PF09726 Macoilin: Transmembra 32.8 2.6E+02 0.0057 30.8 9.5 19 66-84 544-562 (697)
130 PRK04863 mukB cell division pr 32.5 4.2E+02 0.0092 31.9 11.6 11 192-202 439-449 (1486)
131 PF08014 DUF1704: Domain of un 32.5 4.7E+02 0.01 26.3 10.5 70 184-260 109-187 (349)
132 PF07106 TBPIP: Tat binding pr 31.9 3.5E+02 0.0077 23.7 9.4 64 89-160 70-134 (169)
133 PF07303 Occludin_ELL: Occludi 31.8 3E+02 0.0064 22.8 9.0 41 64-104 26-69 (101)
134 PF04156 IncA: IncA protein; 31.6 3.7E+02 0.0079 23.8 11.6 19 66-84 94-112 (191)
135 PF05529 Bap31: B-cell recepto 30.8 3.2E+02 0.0068 24.5 8.3 16 140-155 173-188 (192)
136 TIGR02169 SMC_prok_A chromosom 30.7 8E+02 0.017 27.4 15.9 30 181-214 1076-1105(1164)
137 KOG0996 Structural maintenance 30.6 6E+02 0.013 30.0 11.8 47 60-106 900-950 (1293)
138 PRK13729 conjugal transfer pil 30.6 3E+02 0.0066 29.0 9.1 23 6-28 15-37 (475)
139 KOG0971 Microtubule-associated 30.6 5.8E+02 0.013 29.5 11.5 14 30-43 373-386 (1243)
140 smart00150 SPEC Spectrin repea 30.5 2.3E+02 0.0049 21.1 13.9 83 67-155 5-90 (101)
141 PF06864 PAP_PilO: Pilin acces 30.5 1E+02 0.0022 31.3 5.5 92 169-262 298-407 (414)
142 PF04849 HAP1_N: HAP1 N-termin 30.2 3.3E+02 0.0072 27.1 8.9 12 140-151 274-285 (306)
143 PF11593 Med3: Mediator comple 30.1 3.1E+02 0.0067 28.1 8.7 80 76-161 10-91 (379)
144 KOG2662 Magnesium transporters 30.0 6.2E+02 0.014 26.3 11.0 14 190-203 302-315 (414)
145 PF02185 HR1: Hr1 repeat; Int 29.9 2.4E+02 0.0053 21.2 6.6 44 119-162 16-60 (70)
146 TIGR03358 VI_chp_5 type VI sec 29.7 1.8E+02 0.0038 26.3 6.3 58 87-144 99-156 (159)
147 KOG0933 Structural maintenance 29.5 7.9E+02 0.017 28.7 12.4 60 55-114 155-241 (1174)
148 PF12325 TMF_TATA_bd: TATA ele 29.4 3.6E+02 0.0079 23.0 11.8 89 61-152 17-113 (120)
149 KOG4552 Vitamin-D-receptor int 29.3 5.2E+02 0.011 24.8 9.7 23 106-128 45-67 (272)
150 PRK00409 recombination and DNA 29.3 8.3E+02 0.018 27.2 13.2 14 57-70 499-512 (782)
151 TIGR01062 parC_Gneg DNA topois 28.8 8.3E+02 0.018 27.2 12.5 61 89-152 406-469 (735)
152 PF01920 Prefoldin_2: Prefoldi 28.7 2.9E+02 0.0063 21.7 11.6 25 134-158 61-85 (106)
153 PRK11578 macrolide transporter 28.3 5.2E+02 0.011 25.3 10.0 33 4-37 9-41 (370)
154 PF00435 Spectrin: Spectrin re 28.1 2.5E+02 0.0055 20.8 12.4 88 65-157 6-95 (105)
155 KOG0994 Extracellular matrix g 27.1 7.8E+02 0.017 29.4 11.9 43 57-99 1508-1550(1758)
156 PF12252 SidE: Dot/Icm substra 26.7 6.4E+02 0.014 29.7 11.1 102 61-164 1064-1182(1439)
157 PF14662 CCDC155: Coiled-coil 26.4 3.7E+02 0.008 25.1 7.9 69 92-163 44-116 (193)
158 TIGR01063 gyrA DNA gyrase, A s 26.1 5.2E+02 0.011 28.9 10.4 44 106-152 429-472 (800)
159 PRK05560 DNA gyrase subunit A; 26.0 5.1E+02 0.011 28.9 10.4 50 100-152 424-475 (805)
160 PRK08178 acetolactate synthase 25.9 1.3E+02 0.0028 25.0 4.4 40 197-236 25-64 (96)
161 PF09177 Syntaxin-6_N: Syntaxi 25.9 3.5E+02 0.0075 21.7 12.0 84 66-159 11-94 (97)
162 PRK14900 valS valyl-tRNA synth 25.8 2E+02 0.0043 33.1 7.4 56 60-115 842-898 (1052)
163 smart00787 Spc7 Spc7 kinetocho 25.7 6.6E+02 0.014 24.8 13.5 67 92-158 159-227 (312)
164 KOG4674 Uncharacterized conser 25.6 1.1E+03 0.023 29.3 13.2 42 65-108 1283-1324(1822)
165 PF15011 CK2S: Casein Kinase 2 25.3 5E+02 0.011 23.3 8.5 37 175-211 115-153 (168)
166 KOG4848 Extracellular matrix-a 25.3 5.8E+02 0.013 24.1 11.3 47 4-51 19-68 (225)
167 PRK14140 heat shock protein Gr 25.3 5.5E+02 0.012 23.7 10.9 106 61-170 38-148 (191)
168 PF03233 Cauli_AT: Aphid trans 25.3 5.2E+02 0.011 23.5 9.2 52 106-160 109-160 (163)
169 PF07061 Swi5: Swi5; InterPro 25.1 2.1E+02 0.0046 22.9 5.4 18 90-107 38-55 (83)
170 TIGR02978 phageshock_pspC phag 24.9 1.5E+02 0.0032 25.5 4.8 33 57-89 81-113 (121)
171 PF13514 AAA_27: AAA domain 24.8 3.2E+02 0.0069 31.4 8.8 12 9-20 116-127 (1111)
172 PRK13979 DNA topoisomerase IV 24.8 5E+02 0.011 29.8 10.1 44 106-152 448-491 (957)
173 COG3516 Predicted component of 24.5 1.7E+02 0.0036 26.8 5.2 58 87-144 104-161 (169)
174 TIGR01219 Pmev_kin_ERG8 phosph 24.5 1.9E+02 0.004 30.2 6.3 43 171-216 395-442 (454)
175 KOG3229 Vacuolar sorting prote 24.1 6.3E+02 0.014 24.1 11.1 107 91-204 108-226 (227)
176 TIGR01061 parC_Gpos DNA topois 23.8 1E+03 0.022 26.4 12.3 44 107-153 430-473 (738)
177 PF13450 NAD_binding_8: NAD(P) 23.7 1.2E+02 0.0025 22.7 3.6 36 203-247 17-53 (68)
178 PHA02414 hypothetical protein 23.4 4.5E+02 0.0099 22.1 7.7 46 69-114 6-52 (111)
179 TIGR00606 rad50 rad50. This fa 23.3 1.1E+03 0.025 27.6 13.0 21 138-158 795-815 (1311)
180 PF04420 CHD5: CHD5-like prote 23.3 4.7E+02 0.01 23.1 7.9 39 65-103 38-78 (161)
181 PF10359 Fmp27_WPPW: RNA pol I 23.1 3.7E+02 0.008 27.9 8.2 51 62-112 165-221 (475)
182 COG3881 PRC-barrel domain cont 23.0 88 0.0019 28.5 3.2 42 210-251 12-55 (176)
183 PRK13182 racA polar chromosome 22.9 4.7E+02 0.01 23.7 7.9 14 142-155 132-145 (175)
184 PRK01156 chromosome segregatio 22.8 9.8E+02 0.021 26.5 11.9 35 49-83 454-492 (895)
185 KOG0217 Mismatch repair ATPase 22.7 1.2E+03 0.025 27.4 12.2 44 70-114 591-634 (1125)
186 PF06248 Zw10: Centromere/kine 22.7 9.3E+02 0.02 25.5 11.7 58 67-124 53-116 (593)
187 smart00472 MIR Domain in ryano 22.7 80 0.0017 22.3 2.4 21 302-322 7-27 (57)
188 TIGR03007 pepcterm_ChnLen poly 22.6 8.3E+02 0.018 24.9 11.7 17 67-83 254-270 (498)
189 TIGR01010 BexC_CtrB_KpsE polys 22.6 7.3E+02 0.016 24.3 12.0 26 133-159 241-266 (362)
190 KOG0979 Structural maintenance 22.5 1.1E+03 0.024 27.5 12.0 52 69-123 183-234 (1072)
191 KOG0250 DNA repair protein RAD 22.5 1.3E+03 0.027 27.1 12.5 62 94-158 397-459 (1074)
192 KOG4593 Mitotic checkpoint pro 22.5 1.1E+03 0.024 26.3 16.3 61 141-203 509-570 (716)
193 PRK02224 chromosome segregatio 22.5 8.5E+02 0.019 26.8 11.3 8 304-311 847-854 (880)
194 TIGR02338 gimC_beta prefoldin, 22.3 4.4E+02 0.0095 21.6 10.2 44 68-111 11-54 (110)
195 COG4026 Uncharacterized protei 22.3 3.4E+02 0.0074 26.2 7.0 16 140-155 161-176 (290)
196 PF03961 DUF342: Protein of un 22.3 6.6E+02 0.014 25.6 9.8 22 140-161 387-408 (451)
197 PF12128 DUF3584: Protein of u 22.1 1.3E+03 0.028 27.0 15.1 58 64-121 439-496 (1201)
198 PF08172 CASP_C: CASP C termin 22.0 3.5E+02 0.0076 25.9 7.2 57 57-116 76-133 (248)
199 cd07599 BAR_Rvs167p The Bin/Am 21.9 6.1E+02 0.013 23.0 9.4 29 134-162 148-176 (216)
200 PF02815 MIR: MIR domain; Int 21.9 86 0.0019 27.9 2.9 24 302-325 68-91 (190)
201 cd07909 YciF YciF bacterial st 21.8 5.5E+02 0.012 22.6 8.1 49 111-160 9-58 (147)
202 PF12718 Tropomyosin_1: Tropom 21.6 5.4E+02 0.012 22.4 10.7 41 67-110 14-54 (143)
203 KOG0964 Structural maintenance 21.4 8.7E+02 0.019 28.3 10.8 93 68-161 185-284 (1200)
204 PF02388 FemAB: FemAB family; 20.9 4.4E+02 0.0095 26.7 8.1 35 174-208 317-352 (406)
205 TIGR01043 ATP_syn_A_arch ATP s 20.7 2.1E+02 0.0045 31.0 5.9 53 32-85 407-473 (578)
206 KOG3366 Mitochondrial F1F0-ATP 20.6 6.7E+02 0.014 23.0 11.0 31 67-97 27-62 (172)
207 PF10393 Matrilin_ccoil: Trime 20.6 2.1E+02 0.0046 20.7 4.1 23 61-83 24-46 (47)
208 PF11471 Sugarporin_N: Maltopo 20.5 96 0.0021 23.5 2.5 21 65-85 30-50 (60)
209 PRK10697 DNA-binding transcrip 20.3 2.1E+02 0.0045 24.6 4.8 33 57-89 78-110 (118)
210 PRK13415 flagella biosynthesis 20.3 4.9E+02 0.011 24.8 7.6 30 131-160 183-212 (219)
211 KOG1697 Mitochondrial/chloropl 20.2 87 0.0019 30.5 2.7 18 254-271 153-170 (275)
212 KOG2260 Cell division cycle 37 20.2 4.3E+02 0.0092 27.1 7.6 31 29-63 2-32 (372)
213 KOG3358 Uncharacterized secret 20.0 65 0.0014 29.9 1.7 38 290-327 51-116 (211)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-96 Score=700.73 Aligned_cols=266 Identities=49% Similarity=0.801 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~ 141 (330)
.|..||+++..||++|+.+|++|++ |++++++++||+++|+++++.|.+|++..++++++++|+.++ .|+||++||+
T Consensus 4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~-~D~em~ema~ 82 (363)
T COG0216 4 SLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE-KDPEMREMAE 82 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHH
Confidence 4678999999999999999999996 999999999999999999999999999999999999999873 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 020135 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221 (330)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~ 221 (330)
+|+..++.++..|+++|..+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||++++++.++++.|||
T Consensus 83 ~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~ 162 (363)
T COG0216 83 EEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGY 162 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCcc-ccccCCCCeEEEEeeecCCCCCCCcc
Q 020135 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANT 300 (330)
Q Consensus 222 k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~-~~~i~~~dl~i~~~RssG~GGQ~VNk 300 (330)
|++++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||+++++ +++|+|+||+||||||||||||||||
T Consensus 163 kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNt 242 (363)
T COG0216 163 KEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNT 242 (363)
T ss_pred eEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999875 79999999999999999999999999
Q ss_pred cCceEEEEEeCCeeEEEecCccChhhhhcC
Q 020135 301 TNSAVRVTHIPTGMTISIQDERSQHMVKDS 330 (330)
Q Consensus 301 t~saVritH~PTGi~v~~~~eRSQ~~Nk~~ 330 (330)
|+|||||||+||||+|+||+|||||+||+|
T Consensus 243 TdSAVRiTHlPTGIvV~cQderSQ~kNk~k 272 (363)
T COG0216 243 TDSAVRITHLPTGIVVECQDERSQHKNKAK 272 (363)
T ss_pred cchhheeeecCCceEEEecchhhhhhhHHH
Confidence 999999999999999999999999999975
No 2
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=7e-81 Score=608.81 Aligned_cols=264 Identities=48% Similarity=0.795 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT 141 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~ 141 (330)
.|.++++.+..++++|++.+++|+| |++++++++++++.|+++++.|++|.....++.++.+|+++ +|+||+++|+
T Consensus 4 ~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~--~D~e~~~~a~ 81 (360)
T TIGR00019 4 SLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE--SDPEMREMAK 81 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHH
Confidence 4668999999999999999999999 99999999999999999999999999999999999999975 5899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 020135 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY 221 (330)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~ 221 (330)
+|+..+..++++++.+|...|+|++|+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+||
T Consensus 82 ~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ 161 (360)
T TIGR00019 82 EELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGY 161 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCccc
Q 020135 222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTT 301 (330)
Q Consensus 222 k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt 301 (330)
|+|++.|+|++||++|++|+|||||||||+|+++||+|||||+|+|+|..+++++.|+++||+|+|+|||||||||||||
T Consensus 162 ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt 241 (360)
T TIGR00019 162 KEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQHVNTT 241 (360)
T ss_pred eEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccccccCcccEEEEEEECCCCCCCCcCce
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred CceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 302 ~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
+|||||||+||||+|+||++||||+||+
T Consensus 242 ~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~ 269 (360)
T TIGR00019 242 DSAVRITHLPTGIVVECQDERSQHKNKD 269 (360)
T ss_pred eeeEEEEECCCcEEEEECCccCHHHHHH
Confidence 9999999999999999999999999996
No 3
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=3.9e-80 Score=603.75 Aligned_cols=266 Identities=50% Similarity=0.802 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 020135 63 KIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140 (330)
Q Consensus 63 ~~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a 140 (330)
+.|.++++.+++++++|++.+++|+| |+++++++.++++.|+++++.|+++....+++.++++|+.+ ++|++|+++|
T Consensus 2 ~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~-e~D~~~~~~~ 80 (359)
T PRK00591 2 PSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE-ESDPEMREMA 80 (359)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 35678999999999999999999999 99999999999999999999999999999999999999975 4699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCC
Q 020135 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g 220 (330)
++|+..+..++++++.+|...|+|++|+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (359)
T PRK00591 81 KEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGG 160 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcc
Q 020135 221 YKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300 (330)
Q Consensus 221 ~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNk 300 (330)
|++|++.|+|++||++|++|+|||||||||+|+++||+|||||+|+|+|.++++++.|+++||+|+|+||||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNk 240 (359)
T PRK00591 161 YKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNT 240 (359)
T ss_pred eeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCccccccCcccEEEEEEECCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 301 TNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 301 t~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|+|||||||+||||+|+||++||||+||+
T Consensus 241 t~saVrl~H~ptGi~v~~~~eRSQ~~Nk~ 269 (359)
T PRK00591 241 TDSAVRITHLPTGIVVECQDERSQHKNKA 269 (359)
T ss_pred eeeeEEEEECCCcEEEEECCcCCHHHHHH
Confidence 99999999999999999999999999996
No 4
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=1.7e-78 Score=593.15 Aligned_cols=258 Identities=34% Similarity=0.570 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~ 145 (330)
.++.+++|+++|+..+++|+| |++++++++++++.|+++++.|++|....+|+.++.+|+++ +.|+||+++|.+|+.
T Consensus 24 ~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~-e~D~e~~~~a~~e~~ 102 (364)
T TIGR00020 24 DPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE-EDDEETFNELDAELK 102 (364)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 466788899999999999998 99999999999999999999999999999999999999975 469999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 020135 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (330)
Q Consensus 146 ~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~ 225 (330)
.+.+++++++ ...+|+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|+
T Consensus 103 ~l~~~l~~le----~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~ 178 (364)
T TIGR00020 103 ALEKKLAELE----LRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVT 178 (364)
T ss_pred HHHHHHHHHH----HHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEE
Confidence 9999999998 335578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCC-CccccccCCCCeEEEEeeecCCCCCCCcccCce
Q 020135 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA-DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (330)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~-~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~sa 304 (330)
+.|+|++||++|++|+|||||||+|+|+++||+|||||+|+|+|.. ++++++|+++||+|+|+|||||||||||||+||
T Consensus 179 ~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~sa 258 (364)
T TIGR00020 179 ILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSA 258 (364)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccccccceE
Confidence 9999999999999999999999999999999999999999999998 468899999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEecCccChhhhhcC
Q 020135 305 VRVTHIPTGMTISIQDERSQHMVKDS 330 (330)
Q Consensus 305 VritH~PTGi~v~~~~eRSQ~~Nk~~ 330 (330)
|||||+||||+|+||++||||+||++
T Consensus 259 Vri~H~ptgi~v~~q~~RSQ~~Nk~~ 284 (364)
T TIGR00020 259 VRITHIPTGIVVQCQNDRSQHKNKDS 284 (364)
T ss_pred EEEEECCCcEEEEECCccCHHHHHHH
Confidence 99999999999999999999999963
No 5
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=5.1e-78 Score=590.60 Aligned_cols=257 Identities=38% Similarity=0.603 Sum_probs=246.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~ 145 (330)
+++.+.+|+++|+..+++|++ |++++++++++++.|+++++.|++|+...++++++.+|+++ +.|+||+++|++|+.
T Consensus 24 ~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~-e~D~el~~~a~~e~~ 102 (367)
T PRK00578 24 DVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEE-EDDEETLAEAEAELK 102 (367)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 567888999999999999998 99999999999999999999999999999999999999976 469999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 020135 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (330)
Q Consensus 146 ~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~ 225 (330)
.+.+++++++. .+|++||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++.++++.+|||+|+
T Consensus 103 ~l~~~l~~le~----~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~ 178 (367)
T PRK00578 103 ALEKKLAALEL----ERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSAT 178 (367)
T ss_pred HHHHHHHHHHH----HHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEE
Confidence 99999999983 34457999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCc-cccccCCCCeEEEEeeecCCCCCCCcccCce
Q 020135 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (330)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~-~~~~i~~~dl~i~~~RssG~GGQ~VNkt~sa 304 (330)
+.|+|++||++|++|+|||||||+|+|+++||+|||||+|+|+|+.++ .++.|+++||+|+++|||||||||||||+||
T Consensus 179 ~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~sa 258 (367)
T PRK00578 179 FKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSA 258 (367)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCcccceeeE
Confidence 999999999999999999999999999999999999999999999975 4889999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEecCccChhhhhc
Q 020135 305 VRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 305 VritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|||||+||||+|+||++|||++||+
T Consensus 259 Vrl~h~ptgi~v~~~~~RSQ~~Nk~ 283 (367)
T PRK00578 259 VRITHIPTGIVVQCQNERSQHQNKA 283 (367)
T ss_pred EEEEECCCcEEEEECCCCCHHHHHH
Confidence 9999999999999999999999996
No 6
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=9e-78 Score=579.41 Aligned_cols=242 Identities=35% Similarity=0.546 Sum_probs=234.4
Q ss_pred hcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 83 VNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 83 lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
|..|+| |+++++++.||++.|+++++.|++|....+|+.++.+|+.+ ++|+||+++|++|+..+.+++++++ .
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-~~d~e~~~~a~~e~~~l~~~l~~le----~ 75 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE-EYDEDLHEELESEVKGLIQEMNEYE----L 75 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 457898 99999999999999999999999999999999999999975 4699999999999999999999998 6
Q ss_pred hcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccc
Q 020135 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (330)
Q Consensus 161 ~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E 240 (330)
.+||+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|
T Consensus 76 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E 155 (326)
T PRK06746 76 QLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAE 155 (326)
T ss_pred HhccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEeecCCCCCCCceEeeeeEEEEecCCC-ccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEec
Q 020135 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319 (330)
Q Consensus 241 ~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~-~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~ 319 (330)
+|||||||+|||+++||+|||||+|+|+|+.+ +++++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||
T Consensus 156 ~GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q 235 (326)
T PRK06746 156 KGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 (326)
T ss_pred cceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEEC
Confidence 99999999999999999999999999999985 68999999999999999999999999999999999999999999999
Q ss_pred CccChhhhhc
Q 020135 320 DERSQHMVKD 329 (330)
Q Consensus 320 ~eRSQ~~Nk~ 329 (330)
++||||+||+
T Consensus 236 ~~RSQ~~Nk~ 245 (326)
T PRK06746 236 SERSQIKNRE 245 (326)
T ss_pred CCCCHHHHHH
Confidence 9999999996
No 7
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.9e-77 Score=575.52 Aligned_cols=242 Identities=37% Similarity=0.618 Sum_probs=233.2
Q ss_pred hcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 83 VNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 83 lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
+++|+| |+++++++++|++.|+++++.|+.|....+|+.++.+|+.+ +|++|+++|.+|+..+++++++++ .
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~--~d~e~~~~a~~e~~~l~~~l~~~e----~ 74 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE--EDDEMKKEIISEVKNIKEEIDRFK----I 74 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 478998 99999999999999999999999999999999999999964 378899999999999999999887 7
Q ss_pred hcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccc
Q 020135 161 SLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (330)
Q Consensus 161 ~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E 240 (330)
.+||+||+|.++|+|||+||+||+||++||++||+||.+||+++||++++++..+++.+|||+|++.|+|++||++|++|
T Consensus 75 ~~l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E 154 (325)
T PRK05589 75 ETLLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAE 154 (325)
T ss_pred HhcCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEeecCCCCCCCceEeeeeEEEEecCCCc-cccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEec
Q 020135 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQ 319 (330)
Q Consensus 241 ~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~-~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~ 319 (330)
+|||||||+|+|+++||+|||||+|+|+|+.++ .++.|+++||+|+|+|||||||||||||+|||||||+||||+|+||
T Consensus 155 ~GvHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q 234 (325)
T PRK05589 155 KGIHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQ 234 (325)
T ss_pred cceEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEEC
Confidence 999999999999999999999999999999965 5899999999999999999999999999999999999999999999
Q ss_pred CccChhhhhcC
Q 020135 320 DERSQHMVKDS 330 (330)
Q Consensus 320 ~eRSQ~~Nk~~ 330 (330)
++||||+||++
T Consensus 235 ~eRSQ~~Nk~~ 245 (325)
T PRK05589 235 NERSQHSNKET 245 (325)
T ss_pred CccCHHHHHHH
Confidence 99999999963
No 8
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.4e-76 Score=572.00 Aligned_cols=243 Identities=38% Similarity=0.581 Sum_probs=232.0
Q ss_pred HhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 82 LVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 82 ~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
++++|+| |+++++++.|+++.|+++++.|++|....++++++.+|+++ ++|++|+++|++|+..+.+++++++ +
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~-e~D~el~~~a~~e~~~l~~~l~~~e--l- 77 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE-EGDKSIVEDAEKTIRDLKDEIDRRQ--I- 77 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH--H-
Confidence 4678998 99999999999999999999999999999999999999975 4699999999999999999999876 3
Q ss_pred HhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEecccccccccc
Q 020135 160 KSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKF 239 (330)
Q Consensus 160 ~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~ 239 (330)
..++.||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++
T Consensus 78 -~~lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~ 156 (339)
T PRK07342 78 -DALLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKT 156 (339)
T ss_pred -HHHhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhh
Confidence 3334599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEeecCCCCCCCceEeeeeEEEEecCCCc-cccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEe
Q 020135 240 ESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISI 318 (330)
Q Consensus 240 E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~-~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~ 318 (330)
|+|||||||+|||+++||+|||||+|+|+|.+++ ++++|+++||+|+++|||||||||||||+|||||||+||||+|+|
T Consensus 157 E~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~ 236 (339)
T PRK07342 157 ESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQC 236 (339)
T ss_pred ccceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEE
Confidence 9999999999999999999999999999999975 589999999999999999999999999999999999999999999
Q ss_pred cCccChhhhhc
Q 020135 319 QDERSQHMVKD 329 (330)
Q Consensus 319 ~~eRSQ~~Nk~ 329 (330)
|++||||+||+
T Consensus 237 ~~eRSQ~~Nk~ 247 (339)
T PRK07342 237 QQERSQHKNRA 247 (339)
T ss_pred CCcccHHHHHH
Confidence 99999999996
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=3.3e-73 Score=544.39 Aligned_cols=222 Identities=34% Similarity=0.539 Sum_probs=213.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCC
Q 020135 103 LRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTG 182 (330)
Q Consensus 103 L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~G 182 (330)
|+..++.|+.+....+|+.++.+|+.+ ++|+||+++|.+|+..++.++++++ ...|++||+|.++|+|||+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~-~~d~e~~~~~~~e~~~l~~~~~~le----~~~lL~~~~D~~~a~leI~aG~G 76 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAES-EQDEDTALAVIADLDKYQAHVEKLE----FQRMFSGQMDGANAFVDIQAGAG 76 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCccccCCcEEEEECCCC
Confidence 678899999999999999999999987 4799999999999999999999998 34455899999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccccceeEEeecCCCCCCCceEeee
Q 020135 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262 (330)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~ 262 (330)
|+||++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||||+|||+++||+||||
T Consensus 77 G~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsf 156 (313)
T PRK08787 77 GTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSF 156 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCc-cccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 263 VSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 263 a~V~v~P~~~~-~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|+|+|+|+.++ +++.|+++||+|+|+|||||||||||||+|||||||+||||+|+||++|||++||+
T Consensus 157 asV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~ 224 (313)
T PRK08787 157 TSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRD 224 (313)
T ss_pred EEEEEecCcCcccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHH
Confidence 99999999965 68999999999999999999999999999999999999999999999999999996
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-71 Score=539.76 Aligned_cols=228 Identities=48% Similarity=0.769 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCC
Q 020135 102 KLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181 (330)
Q Consensus 102 ~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~ 181 (330)
++..++..+.+......++..++.|..+ .+|+||+++|.+|+..+..+++.+.++++..+||++|+|.++|+|||+||+
T Consensus 68 ~l~~~~~~l~~~~~~~~~~~~lk~l~~~-~e~e~~~~~a~~E~~~~~~~i~~~~~~l~~~lLp~~~~D~~~~iiev~aGa 146 (386)
T KOG2726|consen 68 ELDEVLNALSDRMKLVRELKSLKSLIKE-GEDEDMDELAEEEAEEISKEIERSLHELELSLLPSDPYDAEACIIEVRAGA 146 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEeCCC
Confidence 4556666666666667777778888887 689999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccccceeEEeecCCCCCCCceEee
Q 020135 182 GGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTS 261 (330)
Q Consensus 182 GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts 261 (330)
||+||++|+.+|++||.+||+.+||++++++..+++.+||++|++.|+|++||++|++|.|||||||+|.+++.||+|||
T Consensus 147 GG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E~GvHRv~r~p~~e~~gr~hts 226 (386)
T KOG2726|consen 147 GGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFEAGVHRVQRVPSTETSGRRHTS 226 (386)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeeccCcccceeecCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCC--CccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhcC
Q 020135 262 AVSVAILPQA--DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKDS 330 (330)
Q Consensus 262 ~a~V~v~P~~--~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~~ 330 (330)
|++|+|+|.+ +++++.++++||+|+++|||||||||||||+|||||+|+||||+|+||+|||||+||++
T Consensus 227 tasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTGIvv~cq~eRSq~~Nr~~ 297 (386)
T KOG2726|consen 227 TASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTGIVVECQEERSQHKNRAL 297 (386)
T ss_pred cceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeecCceEEEeecHHhHHhhHHH
Confidence 9999999999 78999999999999999999999999999999999999999999999999999999963
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-61 Score=442.48 Aligned_cols=157 Identities=45% Similarity=0.796 Sum_probs=154.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccccceeEEeecCCC
Q 020135 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252 (330)
Q Consensus 173 ~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~ 252 (330)
|+|+|+||+||+|||+||.|||+||+|||+++||++|+++..+|+.+|+||++|.|+|++||++|+.|.||||++|++|+
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEeeeeEEEEecCCC-ccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 253 EKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 253 ~~~gR~hts~a~V~v~P~~~-~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
++++|+||||++|.|+|+.+ .++++|+++||+|+|+|||||||||||||+|||||||+||||+|.||.+||||+||+
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~ 158 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKA 158 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHH
Confidence 99999999999999999985 568999999999999999999999999999999999999999999999999999985
No 12
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=1.5e-56 Score=407.43 Aligned_cols=152 Identities=26% Similarity=0.437 Sum_probs=139.4
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCceEEEEEEeccccccccc-cccceeEEeecC
Q 020135 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDL-RGYKEASAAISGVGVYGKLK-FESGIHRVQRVP 250 (330)
Q Consensus 173 ~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~-~g~k~a~~~i~G~~ay~~lk-~E~GvHrv~Rvp 250 (330)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|++.|+|+++|++|+ ||+|+|||+|+|
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6999999999999999999999999999999999999999999997 56999999999999999998 556666677777
Q ss_pred CCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 251 ~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
++++++| ||||++|+|+|. +++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+
T Consensus 82 ~~~~~~R-~~s~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 155 (200)
T PRK08179 82 YRPHHGR-KNWFVGIGRFSA----DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKR 155 (200)
T ss_pred CCCCCCc-eEEEEEEEEeCC----cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHH
Confidence 6665555 568999999975 4578999999999999999999999999999999999999999999999999996
No 13
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=2.8e-56 Score=405.71 Aligned_cols=152 Identities=26% Similarity=0.403 Sum_probs=138.0
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC-CCceEEEEEEecccccccccccccee-EEeecC
Q 020135 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDL-RGYKEASAAISGVGVYGKLKFESGIH-RVQRVP 250 (330)
Q Consensus 173 ~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~-~g~k~a~~~i~G~~ay~~lk~E~GvH-rv~Rvp 250 (330)
++|||+||+||+||++||++||+||.+||+++||++++++..+++. +|||+|++.|+|+++|++|+.|.|+| ||+|+|
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999996 57999999999999999996555555 555555
Q ss_pred CCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 251 LTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 251 ~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
++. +.++||||++|+|+|. +++|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|||++||+
T Consensus 81 ~r~-~~~R~ts~~~V~v~~~----~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 154 (200)
T TIGR03072 81 YRP-HHRRKNWFIGVQRFSA----SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKR 154 (200)
T ss_pred CCC-CCCeeEEEEEEEEecC----ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHH
Confidence 555 5556699999999984 4578999999999999999999999999999999999999999999999999996
No 14
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=100.00 E-value=1.2e-33 Score=237.08 Aligned_cols=112 Identities=47% Similarity=0.808 Sum_probs=105.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeE
Q 020135 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208 (330)
Q Consensus 129 e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~ 208 (330)
++++|+||+++|++|+..+.++++.++.++...|+|++|+|.++|+|||+||+||+||++||++||+||++||+++||++
T Consensus 4 ~~~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~ 83 (115)
T PF03462_consen 4 EEEEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKV 83 (115)
T ss_dssp CCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCceEEEEEEeccccccccccc
Q 020135 209 EVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240 (330)
Q Consensus 209 ~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E 240 (330)
++++.++++.+|+|+|++.|+|++||++||+|
T Consensus 84 ~~l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 84 EVLDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EEEecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 99999999999999999999999999999997
No 15
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=99.89 E-value=3.8e-24 Score=179.21 Aligned_cols=57 Identities=46% Similarity=0.753 Sum_probs=53.6
Q ss_pred ccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 273 ~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
..++.|+++||+|+|+|||||||||||||+|+|||+|+||||+|+||++|||+.||+
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~ 60 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNRE 60 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHH
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999985
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.77 E-value=2.8e-19 Score=155.01 Aligned_cols=55 Identities=29% Similarity=0.519 Sum_probs=50.9
Q ss_pred ccccCCCCeEEEEeeecCCCCCCCcccCceEEEEE------eC-----------------Ce-eEEEecCccChhhhhc
Q 020135 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH------IP-----------------TG-MTISIQDERSQHMVKD 329 (330)
Q Consensus 275 ~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH------~P-----------------TG-i~v~~~~eRSQ~~Nk~ 329 (330)
++.|+++||++.|+|||||||||||||+|+|+|+| +| +| |+|+||++|||++||+
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~ 85 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRE 85 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHH
Confidence 46788999999999999999999999999999996 77 35 9999999999999985
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=6.5e-11 Score=104.83 Aligned_cols=55 Identities=35% Similarity=0.476 Sum_probs=47.5
Q ss_pred ccccCCCCeEEEEeeecCCCCCCCcccCceEEEEE-------eC------------------CeeEEEecCccChhhhhc
Q 020135 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH-------IP------------------TGMTISIQDERSQHMVKD 329 (330)
Q Consensus 275 ~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH-------~P------------------TGi~v~~~~eRSQ~~Nk~ 329 (330)
+-.|+.+-+.|.+.||||||||||||++|.|-|+. || .-|++.++.+||||.|.+
T Consensus 34 ~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Nia 113 (172)
T KOG3429|consen 34 KGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIA 113 (172)
T ss_pred CCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHH
Confidence 34577889999999999999999999999999974 22 339999999999999975
No 18
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=88.21 E-value=2.2 Score=45.46 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--C--HHHHHHHHHHHHhhHHHH-HHHHHHHHHHH
Q 020135 63 KIMEQRVLAIERRSACLENLVNQPEA--S--PAEYSKANKELRKLRDSM-HLISELRTKQK 118 (330)
Q Consensus 63 ~~m~~rLe~l~~r~~eLe~~lsdP~~--D--~~~~~kl~KE~~~L~~iv-e~~~~l~~~~e 118 (330)
..++.+++.++++.++|+..+++|++ | .++...+.+++..++.-+ +.|.+|.+..+
T Consensus 566 ~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 566 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999976 3 236788888877776433 33444444443
No 19
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=86.13 E-value=2.4 Score=32.19 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKE 119 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~ed 119 (330)
+.-+...++.++..+..++..|++|+| ...-..-+.++..+|...-..+..+...++.
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778899999999999999999999 1111123445555555555555555544443
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.10 E-value=17 Score=35.66 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEe
Q 020135 190 AVDVFKMYERYSQKKGWKFEVVG 212 (330)
Q Consensus 190 a~~L~~mY~~~a~~~g~~~~~i~ 212 (330)
+..|-..|..+....||++.-++
T Consensus 278 v~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHHHHHCcEEEEEe
Confidence 46788888899999999997665
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.69 E-value=13 Score=34.59 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATE 142 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~-~~edl~~l~eLl~e~~eD~El~e~a~e 142 (330)
.+..+++.+++++++++.++++-+-+ +..+.+++...++.-+.... ..++.+.|.+- .+.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~----------l~~~~~ 153 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQ----------LIVAQK 153 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 45678888888888888888764321 22333333333322222111 22222233222 233566
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 020135 143 ELCLAIDEEKRLQSLLLKSLL 163 (330)
Q Consensus 143 El~~l~~~l~~le~~l~~~Ll 163 (330)
+++.++.+++.+++......+
T Consensus 154 ~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777665555543
No 22
>PRK11546 zraP zinc resistance protein; Provisional
Probab=81.65 E-value=13 Score=33.00 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHH
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDS 106 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~i 106 (330)
|...+...+..--+.+..+..||+.+++.|..|++++.++.+|++.|+..
T Consensus 55 I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 55 IHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44444444444445677789999999999999999999999999998874
No 23
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=81.47 E-value=5.9 Score=42.12 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--CHH-HHHHHHHHHHhhHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEA--SPA-EYSKANKELRKLRD 105 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~--D~~-~~~kl~KE~~~L~~ 105 (330)
+..++.+++.++++.++|+..+++|++ |.. ++.++.+++..++.
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQ 616 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999976 544 78888888877774
No 24
>PRK10869 recombination and repair protein; Provisional
Probab=80.65 E-value=36 Score=36.01 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~ 111 (330)
+..-...+++-..+|...+++-++||.+...+..++..|..+...|.
T Consensus 270 l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 270 LEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333344444555555555557799888888888777777665554
No 25
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=79.18 E-value=22 Score=33.22 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC----C--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020135 63 KIMEQRVLAIERRSACLENLVNQPE----A--SPAEYSKANKELRKLRDSMHLISELRTKQKEID 121 (330)
Q Consensus 63 ~~m~~rLe~l~~r~~eLe~~lsdP~----~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~ 121 (330)
+.+..||+.+..|+..+...+.+-- + |...+...+.|+..|..+...|....-..+-.+
T Consensus 48 ~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~ 112 (204)
T COG5491 48 RKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQ 112 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888765554331 2 788999999999999999888877775544444
No 26
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.94 E-value=91 Score=32.87 Aligned_cols=135 Identities=14% Similarity=0.132 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 020135 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDE 150 (330)
Q Consensus 72 l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~-~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~ 150 (330)
+++=..+|...+++-++||.+...+..++..+..+...|. .+....+.++.+..-+..-+...+-.+.+++++..+.++
T Consensus 282 l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~ 361 (563)
T TIGR00634 282 VEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEE 361 (563)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3334444555555567799999999999998888777665 222233333333222221112333344455555555555
Q ss_pred HHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCe---EE--EEeeccC------CCC
Q 020135 151 EKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWK---FE--VVGVTES------DLR 219 (330)
Q Consensus 151 l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~---~~--~i~~~~~------~~~ 219 (330)
+.++-.+|...- ..+|..|......+....|+. +. +...... ...
T Consensus 362 l~~~a~~Ls~~R------------------------~~~a~~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~ 417 (563)
T TIGR00634 362 LDKAAVALSLIR------------------------RKAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAY 417 (563)
T ss_pred HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCC
Confidence 554433322211 234556666666666664443 33 2221111 245
Q ss_pred CceEEEEEEec
Q 020135 220 GYKEASAAISG 230 (330)
Q Consensus 220 g~k~a~~~i~G 230 (330)
|+..|.|.|+-
T Consensus 418 G~d~v~f~~~~ 428 (563)
T TIGR00634 418 GADQVEFLFSA 428 (563)
T ss_pred CceEEEEEEec
Confidence 78888888863
No 27
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=77.99 E-value=15 Score=29.92 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~ 111 (330)
|.-+++++.....+++.++..+-.+...++.-..+-+|+..|...+..++
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccH
Confidence 45678899999999999999999999988888888888888877766654
No 28
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.78 E-value=1.1e+02 Score=32.77 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISE-LRTKQKEIDGLKSLIYECSEDKDMLDM 139 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~-l~~~~edl~~l~eLl~e~~eD~El~e~ 139 (330)
+...+.+-+..+++=..+|...+.+-+|||.+..++..++..|..+...|.. .....+-.+.+.+=+..-+...+-.+.
T Consensus 267 ~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~ 346 (557)
T COG0497 267 LAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEA 346 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444445555666667778888888889999999999999999888776654 333333333222211111112222344
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEEKRLQ 155 (330)
Q Consensus 140 a~eEl~~l~~~l~~le 155 (330)
++.++..+..++.+.-
T Consensus 347 Le~~~~~l~~~~~~~A 362 (557)
T COG0497 347 LEKEVKKLKAELLEAA 362 (557)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 29
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.01 E-value=45 Score=34.64 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCH--------------HHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHH-H
Q 020135 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASP--------------AEYSKANKELRKLRDSMHLISELRTKQ-KEID-G 122 (330)
Q Consensus 59 ~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~--------------~~~~kl~KE~~~L~~ive~~~~l~~~~-edl~-~ 122 (330)
++|+..+.+|+++++.+-..|.+++.+|-.++ +.+.....-+..|+.-|+.|+.+.... ++.. .
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999998887763211 234444445556677777777766432 2222 2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020135 123 LKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 123 l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le 155 (330)
+..... +..+++++...+-..|+.++++-+
T Consensus 280 ~~qy~~---Ee~~~reen~rlQrkL~~e~erRe 309 (552)
T KOG2129|consen 280 LMQYRA---EEVDHREENERLQRKLINELERRE 309 (552)
T ss_pred HHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 223333 345666666655556666655543
No 30
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=74.90 E-value=11 Score=42.61 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020135 59 NDLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEID 121 (330)
Q Consensus 59 ~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~ 121 (330)
..-+..+.++++.++++++.++++|++|+| .-.-...+.++..+|....+.+..+...++++.
T Consensus 928 ~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 928 KKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556889999999999999999999998 333345566677777766666666655555544
No 31
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=74.63 E-value=25 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHH
Q 020135 183 GEEASLFAVDVFKMYERY 200 (330)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~ 200 (330)
|.+...|+..++..|.+.
T Consensus 287 g~~i~~~~~~~~~~y~~~ 304 (555)
T TIGR03545 287 GPEIRKYLQKFLKYYDQA 304 (555)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 889999999999888883
No 32
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.82 E-value=64 Score=34.57 Aligned_cols=91 Identities=13% Similarity=0.231 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL----KSLIYECSEDKDMLDMA 140 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l----~eLl~e~~eD~El~e~a 140 (330)
+...++.+++...+|+++++.-.-++.+-..+-++++.|++-+..|..|....++-... .++++. -.+.-
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~------Eie~k 306 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS------EIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHH
Confidence 34567777788888888887433477777888888898999988888877665544322 222221 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020135 141 TEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~ 161 (330)
++|++.++.+.+.|...+...
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666555554443
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.67 E-value=62 Score=31.76 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020135 92 EYSKANKELRKLRDSMHLISELRTK-QKEIDGLKSLIYE-CSEDKDMLDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 92 ~~~kl~KE~~~L~~ive~~~~l~~~-~edl~~l~eLl~e-~~eD~El~e~a~eEl~~l~~~l~~le 155 (330)
....+.+....+..++..+...... ..++..+++...+ +..|++-.+.++.++..+..+++...
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444332 4455555555432 22477777777777777777776443
No 34
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.74 E-value=14 Score=36.48 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 76 SACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL 126 (330)
Q Consensus 76 ~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eL 126 (330)
+..|...+.+|+|+++...+.++-.+.|-..|.....|....+++.=+.+-
T Consensus 172 ~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~ 222 (344)
T PF12777_consen 172 IKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQK 222 (344)
T ss_dssp HHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444566788999999999999999999999988888887766544444333
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=70.42 E-value=76 Score=34.72 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHH
Q 020135 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDS 106 (330)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~i 106 (330)
.+..++++++..+.+-+. +.+..+..++.+|+..
T Consensus 567 ~~~~~~~~~~~~l~~L~~--~~~~~~~~~~~~l~~~ 600 (880)
T PRK03918 567 ELEEELAELLKELEELGF--ESVEELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHHHHHHhhhcc--chHHHHHHHHHHhhhh
Confidence 333344444444443221 2333444444444444
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.28 E-value=97 Score=30.63 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEE
Q 020135 190 AVDVFKMYERYSQKKGWKFEVV 211 (330)
Q Consensus 190 a~~L~~mY~~~a~~~g~~~~~i 211 (330)
+..|.+-|..+-...||++.-+
T Consensus 273 i~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 273 IEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHhCCeeEec
Confidence 4577788888888899998755
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.22 E-value=1.1e+02 Score=29.34 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHc-CCeEEEE
Q 020135 191 VDVFKMYERYSQKK-GWKFEVV 211 (330)
Q Consensus 191 ~~L~~mY~~~a~~~-g~~~~~i 211 (330)
.+||.-|.+..... |.-+-.+
T Consensus 174 ~ell~~yeri~~~~kg~gvvpl 195 (239)
T COG1579 174 PELLSEYERIRKNKKGVGVVPL 195 (239)
T ss_pred HHHHHHHHHHHhcCCCceEEee
Confidence 46788888887765 6555444
No 38
>PLN02943 aminoacyl-tRNA ligase
Probab=68.59 E-value=14 Score=41.61 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEI 120 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl 120 (330)
.-+..+.++++.++++++.++++|++|+| +-.-...+.++..+|+...+.+..+++.++++
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999998 22333445666666666655555555444443
No 39
>PLN02381 valyl-tRNA synthetase
Probab=67.00 E-value=20 Score=40.93 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020135 59 NDLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEID 121 (330)
Q Consensus 59 ~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~ 121 (330)
..-+..+.++++.++++++.++++|++|+| +-.-...+.++..+|.........+...+..+.
T Consensus 996 ~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 1059 (1066)
T PLN02381 996 EAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLE 1059 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556889999999999999999999998 222334455666666666555555555444443
No 40
>PRK09039 hypothetical protein; Validated
Probab=65.47 E-value=1.5e+02 Score=29.52 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENLVNQPE--A--SPAEYSKANKELRKLRDSMH-LISELRTKQKEIDGLKSL 126 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~lsdP~--~--D~~~~~kl~KE~~~L~~ive-~~~~l~~~~edl~~l~eL 126 (330)
...++.++.+-+.|+....... . ...++..+..++...+.... .+.++.....+|+.|+..
T Consensus 87 ~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 87 RASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444444555555433110 1 23445555555555555433 444444444444444443
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=64.87 E-value=1.5e+02 Score=34.22 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCccc--cceEEEEcC----------CCchHHHHHHHHHHHH
Q 020135 133 DKDMLDMATEELCLAIDEEKRLQSLLLK----SLLPKDDADER--DCILEVRAG----------TGGEEASLFAVDVFKM 196 (330)
Q Consensus 133 D~El~e~a~eEl~~l~~~l~~le~~l~~----~Llp~d~~D~~--~~ileI~aG----------~GG~Ea~~~a~~L~~m 196 (330)
|...++...+-...+...+..+-..|.- .|.+.+|.|.- ++.|.++|. .||+=|--..+.||-+
T Consensus 1004 d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi 1083 (1163)
T COG1196 1004 DKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAI 1083 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHH
Confidence 4455555555555555666655544422 23445555643 444555553 6888887777777755
Q ss_pred HHHHHHHcCCeEEEEeeccCC----------------CCCceEEEEEEe------ccccccccccccceeEEeecCCC
Q 020135 197 YERYSQKKGWKFEVVGVTESD----------------LRGYKEASAAIS------GVGVYGKLKFESGIHRVQRVPLT 252 (330)
Q Consensus 197 Y~~~a~~~g~~~~~i~~~~~~----------------~~g~k~a~~~i~------G~~ay~~lk~E~GvHrv~Rvp~~ 252 (330)
+ ..+-..+-++|..... .++-..++++-. .+..||-...+.||.+|+.++..
T Consensus 1084 ~----~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~vvsv~l~ 1157 (1163)
T COG1196 1084 Q----KYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLVGVTMQEKGVSKVVSVDLE 1157 (1163)
T ss_pred H----hhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHeeeEeecCCceEEEEeeHh
Confidence 4 2344566666654332 122222333221 13346666666677777766543
No 42
>PLN02678 seryl-tRNA synthetase
Probab=64.45 E-value=1.8e+02 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
.+.+++..++.+++.+++++...+
T Consensus 82 ~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 82 ELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888776554
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.30 E-value=1.3e+02 Score=31.03 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHhhc
Q 020135 59 NDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHL--------ISELRTKQKEIDGLKSLIYEC 130 (330)
Q Consensus 59 ~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~--------~~~l~~~~edl~~l~eLl~e~ 130 (330)
+.-+..+.+.+..++.+++.++..+.+-.-...++.++.+++.+++..+.. ..+......++..+.+-..+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~- 376 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD- 376 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Confidence 344445556666677777766666553211122333344444443322221 22223333344444333221
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 131 SEDKDMLDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 131 ~eD~El~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
..+=+..+.+++.++..++.+++++..
T Consensus 377 --~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 377 --NAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122245566677777777666665543
No 44
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=63.37 E-value=67 Score=24.75 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=18.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 020135 84 NQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120 (330)
Q Consensus 84 sdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl 120 (330)
++|+||++.+.+-.-....+..+......+.......
T Consensus 2 ~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~ 38 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEK 38 (87)
T ss_pred CCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 4677777766653333333444444444444444333
No 45
>COG5570 Uncharacterized small protein [Function unknown]
Probab=63.12 E-value=37 Score=25.40 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHhhHHHHHH
Q 020135 65 MEQRVLAIERRSACLEN----LVNQPEASPAEYSKANKELRKLRDSMHL 109 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~----~lsdP~~D~~~~~kl~KE~~~L~~ive~ 109 (330)
++.+|..+++++..||. .++.|..|-.....+-++.-.|++-++.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEk 51 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEK 51 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 56788889999877764 5567877766666665555555554433
No 46
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=62.69 E-value=21 Score=39.67 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=41.7
Q ss_pred CccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020135 46 LSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRT 115 (330)
Q Consensus 46 ~~~~~~~~~~~~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~ 115 (330)
..++=|+.+-.=...-+..+.++++.++++++.+++++++|+| .-.-...+.++..+|......+..+.+
T Consensus 797 ~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~ 867 (874)
T PRK05729 797 AELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKE 867 (874)
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444322222334566889999999999999999999998 222223344555555544444444433
No 47
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.66 E-value=89 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP 86 (330)
.|+..+..|+..+.++..+|+..++.+
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~ 42 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSAS 42 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578889999999999999999999654
No 48
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.61 E-value=99 Score=35.22 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=41.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 020135 98 KELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDM----ATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 98 KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~----a~eEl~~l~~~l~~le~~l~~~ 161 (330)
......++..+.=+++.....|+.+..||+.- |.||.++ +..|++.+++++++++.+|+++
T Consensus 287 raR~e~keaqe~ke~~k~emad~ad~iEmaTl---dKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 287 RARKEAKEAQEAKERYKEEMADTADAIEMATL---DKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777778888888888888853 5666433 4556777777777777666554
No 49
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=60.31 E-value=23 Score=26.46 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEecc
Q 020135 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV 231 (330)
Q Consensus 194 ~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~ 231 (330)
+........++||.++-++..+.+..|+..+++.++|+
T Consensus 6 L~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 6 LNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 44556777899999999999998889999999999993
No 50
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.72 E-value=1.7e+02 Score=31.02 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMA 140 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a 140 (330)
..+.+.++++.+.+++..+...+.+.... |..+..+ +..+.+.+..+...+.++.+...=+.. | -..|
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~---yS~i~~~---l~~~~~~l~~ie~~q~~~~~~l~~L~~---d---E~~A 412 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVP---YSEIQEE---LEEIEEQLEEIEEEQEEINESLQSLRK---D---EKEA 412 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcC---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHH
Confidence 45566778888888888888888876542 2222222 333333344444444444433332221 1 1457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020135 141 TEELCLAIDEEKRLQSLLLKSLLPKDDAD 169 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~Llp~d~~D 169 (330)
++.+..+...+......+...-||.=|.+
T Consensus 413 r~~l~~~~~~l~~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 413 REKLQKLKQKLREIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 88888888899888888888888876665
No 51
>PLN02742 Probable galacturonosyltransferase
Probab=59.50 E-value=1.3e+02 Score=32.03 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=11.1
Q ss_pred ccCCCCCChH-HHHHHHHHH
Q 020135 51 SYSTEMLSND-LIKIMEQRV 69 (330)
Q Consensus 51 ~~~~~~~~~~-l~~~m~~rL 69 (330)
.++.+|++++ +++.|.+.|
T Consensus 64 ~~~~~~~~~~~~~~~l~dql 83 (534)
T PLN02742 64 NFTEEMLSATSFSRQLADQI 83 (534)
T ss_pred cchhhhcChHHHHHHHHHHH
Confidence 3456666655 666665544
No 52
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.08 E-value=1.4e+02 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 134 KDMLDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 134 ~El~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
.+-+....+++..+..++..++.++.
T Consensus 102 ~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 102 SEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 53
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.56 E-value=1.1e+02 Score=27.90 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCHHH
Q 020135 58 SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI-YECSEDKDM 136 (330)
Q Consensus 58 ~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl-~e~~eD~El 136 (330)
|..-...+..+++.+.++++.++..+.+-. .+..........-..-...+.++....+++..+..-+ .-...||+.
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~---~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELE---EKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 444555566677777777777766655421 1111111111111222233333333333444332222 112347776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020135 137 LDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le 155 (330)
.+...+++..+...+....
T Consensus 137 i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555444
No 54
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.28 E-value=2.1e+02 Score=28.40 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHH
Q 020135 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHL 109 (330)
Q Consensus 72 l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~ 109 (330)
++..+..|+........+|..=.++.++++.|+.-.+.
T Consensus 112 ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 112 LEREIERLEKKQQTSVLTPEEERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333444444444444444443333
No 55
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.10 E-value=2.3e+02 Score=28.98 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK-SLIYECSEDKDML---DMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~-eLl~e~~eD~El~---e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
|.++..++-++..++..-++.++ ...+.+..-. .+....++.++++ ..+.+++..+++++..+++++...+
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr---~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQ---AERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444333 3333332221 1122211122333 3457778888888888887776554
No 56
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=56.68 E-value=58 Score=27.17 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeeccCC-CCCceEEE--EEEeccc
Q 020135 191 VDVFKMYERYSQKKGWKFEVVGVTESD-LRGYKEAS--AAISGVG 232 (330)
Q Consensus 191 ~~L~~mY~~~a~~~g~~~~~i~~~~~~-~~g~k~a~--~~i~G~~ 232 (330)
..++.-..++|...|.++.-++..+.. ..+|.... +.++|.+
T Consensus 53 ~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y 97 (144)
T PF04350_consen 53 PSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSY 97 (144)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeH
Confidence 567777889999999998877665433 35565554 4555644
No 57
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=56.41 E-value=1.2e+02 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 61 LIKIMEQRVLAIERRSACLENLVN 84 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~ls 84 (330)
++.....-++.+.++.+++|..+.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~~~~ 142 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELEDELD 142 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444556678888899999999883
No 58
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=55.92 E-value=7.5 Score=36.10 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCc
Q 020135 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADE 273 (330)
Q Consensus 194 ~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~ 273 (330)
++-|..-+.-+.=++..|...+--. =.=++.+.+.-+.++++|.||-|+|- +|+-+++..|++-|+|---.|.++..
T Consensus 76 l~eYaltsAl~DsRF~PIsr~ELp~-L~CsvslL~nFE~i~d~lDWevG~HG-IrieF~~e~g~krsATyLPeVa~EQg- 152 (210)
T KOG3274|consen 76 LREYALTSALKDSRFPPISREELPS-LQCSVSLLTNFEDIFDYLDWEVGVHG-IRIEFTNETGTKRSATYLPEVAAEQG- 152 (210)
T ss_pred HHHHHHHHHhhcccCCCCChhhcCc-eEEEEEeeccchhcccccceeeccce-EEEEEEcCCCcEeeeeecccchhhcC-
Confidence 5667777776666666665432110 02266777778889999999999997 56888887787776543223333321
Q ss_pred cccccCCCCeEEEEeeecCCCCCCCcccCceEEEEE
Q 020135 274 VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH 309 (330)
Q Consensus 274 ~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH 309 (330)
.+ .-+--=.-.|=+|=+|---+-...++++|-
T Consensus 153 Wd----~~eTidsLirKaGY~g~It~~~r~~I~ltR 184 (210)
T KOG3274|consen 153 WD----QIETIDSLIRKAGYKGPITEELRKSIKLTR 184 (210)
T ss_pred Cc----HHHHHHHHHHhcCCCCccCHHHHhheeeeE
Confidence 11 000001224555655544445556677764
No 59
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=55.57 E-value=1.4e+02 Score=26.06 Aligned_cols=70 Identities=20% Similarity=0.176 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCC--------------HHHHHHHHHHHHHHHHHH
Q 020135 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK---SLIYECSED--------------KDMLDMATEELCLAIDEE 151 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~---eLl~e~~eD--------------~El~e~a~eEl~~l~~~l 151 (330)
|+.+..+.++-+++...+-..++..+...+.+.++. +|+.++.+| +.+.+++++.-+.+.+++
T Consensus 18 DQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i 97 (131)
T KOG1760|consen 18 DQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI 97 (131)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666663 344331111 234556666666666666
Q ss_pred HHHHHHH
Q 020135 152 KRLQSLL 158 (330)
Q Consensus 152 ~~le~~l 158 (330)
+.++.++
T Consensus 98 ~~les~~ 104 (131)
T KOG1760|consen 98 EELESEL 104 (131)
T ss_pred HHHHHHH
Confidence 6666544
No 60
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=55.33 E-value=1.5e+02 Score=30.21 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLEN 81 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~ 81 (330)
+.++.+.+|++.|-.
T Consensus 7 ~~~~~~~~~~~~~~~ 21 (367)
T PRK00578 7 ERLKDLDEKLENIRG 21 (367)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555555543
No 61
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=54.09 E-value=97 Score=27.08 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 104 RDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164 (330)
Q Consensus 104 ~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp 164 (330)
.++...|..|....--+..+.-.++- .+|+|++++++.-++..+++++.+++.+...=+|
T Consensus 17 ~Ei~~Lw~~~~~~~~~~~~~~~f~~~-~~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip 76 (166)
T PF11553_consen 17 SEIGNLWNNYMANYMSICLLQYFLQV-AEDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIP 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34556677777777776666666654 5799999999999999999999999888776544
No 62
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=54.06 E-value=68 Score=30.18 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156 (330)
Q Consensus 91 ~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~ 156 (330)
.++..+..++..++...+.+.++..+-+.++++.++-. -+..++.|++.++.++..|.+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~-------~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIER-------ELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444443333333333211 122344555555555555543
No 63
>PRK11637 AmiB activator; Provisional
Probab=53.80 E-value=1.5e+02 Score=30.04 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 020135 65 MEQRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsd 85 (330)
..++++.++++++++++.+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665543
No 64
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.47 E-value=2.9e+02 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 103 LRDSMHLISELRTKQKEIDGLKSLIYECSED------KDMLDMATEELCLAIDEEKRLQSLLLKSLL 163 (330)
Q Consensus 103 L~~ive~~~~l~~~~edl~~l~eLl~e~~eD------~El~e~a~eEl~~l~~~l~~le~~l~~~Ll 163 (330)
+...-+.++++.+.++++.++..++.++ .| .++.+-.++.+.+..+++.+|++.|...|+
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~kn-q~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLIKN-QDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3344445566666666666666655421 11 233333444455556666666666655554
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.45 E-value=1.3e+02 Score=31.95 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLI 110 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~ 110 (330)
.++.++++|+.++..|...+..+++.++ -.+-..++..+...|...++.+
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999887664 2234445566666777766666
No 66
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=52.40 E-value=1.8e+02 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----CHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA----SPAE-YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~----D~~~-~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl 127 (330)
-++.+++|+++||.++.-++- ++.. +..+.+-...|..++....+++...+.+.++...+
T Consensus 6 ~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YL 70 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYL 70 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHc
Confidence 467788888889988853221 2322 23344445556666666677777777777777655
No 67
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.97 E-value=1.9e+02 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 116 KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 116 ~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
+.+++.++.+ .......+ ..-+.++|+.++++++-|+..|.
T Consensus 144 K~~ql~~~~~--~~~~~~~~-l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 144 KERQLRELEE--GRSKSGKN-LKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred HHHHHHhhhc--cCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666654 21112223 34467888888888888876653
No 68
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=51.74 E-value=1.2e+02 Score=24.50 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchH
Q 020135 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEE 185 (330)
Q Consensus 106 ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~E 185 (330)
+++.++.+.....+.....+-+.+..+|++++..+.+-...-.....+|+..+... .-. |.+
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~--Gg~----------------p~~ 63 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQEL--GGE----------------PEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT--T------------------H--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC----------------cCc
Confidence 34455555555555554444333334578888888888888777788887655543 111 223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020135 186 ASLFAVDVFKMYERYSQ 202 (330)
Q Consensus 186 a~~~a~~L~~mY~~~a~ 202 (330)
..-|.+.+-++|.....
T Consensus 64 ~gs~~g~~~r~~~~ik~ 80 (111)
T PF09537_consen 64 SGSFKGALHRAWMDIKS 80 (111)
T ss_dssp --HHCHHHH-TTTHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 33466667777666655
No 69
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=51.11 E-value=2.4e+02 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLI 110 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~ 110 (330)
+++....-++.+.++.+.+|..+-.... . ....++..|++.+-.+
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~-~----~~l~~l~~l~~~l~~l 192 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTT-N----EELERLGELRRSLVYL 192 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCcc-H----HHHHHHHHHHHHHHHH
Confidence 3444455778888999999977765432 1 3344444444444333
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=51.09 E-value=2.1e+02 Score=31.50 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVN 84 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~ls 84 (330)
.++.-+..+++.+..+.++|+..+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~ 492 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVE 492 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666665554
No 71
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.83 E-value=2.1e+02 Score=29.94 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=8.8
Q ss_pred cCCCchHHHHH
Q 020135 179 AGTGGEEASLF 189 (330)
Q Consensus 179 aG~GG~Ea~~~ 189 (330)
+..||++|.--
T Consensus 241 ~~~~gD~a~~~ 251 (552)
T KOG2129|consen 241 PDVHGDEAAAE 251 (552)
T ss_pred ccccCchHHHH
Confidence 88999998644
No 72
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=50.74 E-value=75 Score=28.47 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 020135 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (330)
Q Consensus 87 ~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl 144 (330)
+|.|+...+-.-++++|...-+.+..++........+...+++--.|++.++.+..|+
T Consensus 98 DF~Pd~v~~qVp~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~~el 155 (157)
T PF05591_consen 98 DFHPDAVAEQVPELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLKSEL 155 (157)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 5788888777788888888888888888888888888777765345777777666665
No 73
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=50.61 E-value=2.1e+02 Score=27.25 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 020135 65 MEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP 86 (330)
...-++.++++.+++|..+-+.
T Consensus 147 ~~~~l~~l~~~~~~le~~l~~~ 168 (318)
T TIGR00383 147 YFPLLENIEDELEELEDEIISG 168 (318)
T ss_pred cHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778888999998877553
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.16 E-value=2.2e+02 Score=27.07 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC
Q 020135 107 MHLISELRTKQKEIDGLKSLIYECSED----KDMLDMATEELCLAIDEEKRLQSL-LLKSLLP 164 (330)
Q Consensus 107 ve~~~~l~~~~edl~~l~eLl~e~~eD----~El~e~a~eEl~~l~~~l~~le~~-l~~~Llp 164 (330)
....++|+...+|+..|..+++....+ .+......+|+..+..+++++..+ +-+.=||
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 344455566666666666666432111 234455667888888888888766 4444444
No 75
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.83 E-value=2.7e+02 Score=29.47 Aligned_cols=31 Identities=29% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D 169 (330)
.|+..+..+...+..+...+...-+|.-|.+
T Consensus 415 eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~ 445 (569)
T PRK04778 415 EAREKLERYRNKLHEIKRYLEKSNLPGLPED 445 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 3555666666667766666666667765543
No 76
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.68 E-value=3.1e+02 Score=30.44 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 136 MLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 136 l~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
.++.|++.+.++..+++.+.+++..
T Consensus 566 a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 566 LEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666665555543
No 77
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=49.53 E-value=47 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccc
Q 020135 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232 (330)
Q Consensus 194 ~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ 232 (330)
+......+.++||.++-+...+.+..|+...++.+.|+.
T Consensus 16 L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 16 LLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 445567778999999999999888899999999988754
No 78
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=49.30 E-value=38 Score=26.71 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccc
Q 020135 194 FKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236 (330)
Q Consensus 194 ~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~ 236 (330)
+......+.++||.++-++..+.+..++..+++.+.++.+...
T Consensus 17 L~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~q 59 (76)
T PRK11152 17 LERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDL 59 (76)
T ss_pred HHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHH
Confidence 3445577789999999999999888889999999976665443
No 79
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=49.30 E-value=3.4e+02 Score=31.55 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020135 71 AIERRSACLE----NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123 (330)
Q Consensus 71 ~l~~r~~eLe----~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l 123 (330)
....+.++++ ..|++-++|+.....+.+++..|..-+...+..+....+....
T Consensus 747 ~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~ 803 (1201)
T PF12128_consen 747 EAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDW 803 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444445554 4445567799888888888888877766666665555555544
No 80
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=48.56 E-value=2.3e+02 Score=26.30 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 91 AEYSKANKELRKLRDSMHLISELR-TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 91 ~~~~kl~KE~~~L~~ive~~~~l~-~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~ 161 (330)
.+.+.+--++..|...+....+-. ....+|.+|..++. .++.++++.+|.+++..++++|...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt--------~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT--------TEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443322 23344555555543 2456777888888888887766543
No 81
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.47 E-value=2.6e+02 Score=29.04 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCC
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~ 181 (330)
.++.++.++++++..++.+|.... +.+..+...+.+.|.+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~-~~~~~~~~~v~v~l~~~~ 190 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALL-TGKSQRSHTVLVRLEAPE 190 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCccceEEEEEEEeccC
Confidence 455667777777777777664432 333444456677777543
No 82
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=47.99 E-value=1.1e+02 Score=24.04 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHH
Q 020135 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 70 e~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~iv 107 (330)
..+.....+|...+..|.+|+.+...+.+++..+..-.
T Consensus 66 ~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l 103 (125)
T PF13801_consen 66 QELRAARQELRALLAAPPPDEAAIEALLEEIREAQAEL 103 (125)
T ss_dssp HHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44566678888999999999999988888887776643
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.97 E-value=2.7e+02 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDS 106 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~i 106 (330)
+.+++..++.++++++..+.... +.+.+.++.+++..+..-
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~-~~e~i~~l~e~l~~l~~~ 436 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIP-SEEQIAQLLEELGEAQNE 436 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 34567777888888888887633 334555555555544443
No 84
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.92 E-value=3.2e+02 Score=27.90 Aligned_cols=25 Identities=28% Similarity=0.173 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..+.+++..+++++..+++++...+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 79 KELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778887777777775554
No 85
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=47.42 E-value=1.6e+02 Score=25.44 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 108 HLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 108 e~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
+.+++|.+...|-..-.+-+.+..+|++++.....-...-...+.+|+..+..
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~ 55 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVAS 55 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433333568899888887777777777777765554
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.65 E-value=2.7e+02 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 020135 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRK 102 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~ 102 (330)
.+..+.+|.+..+..+ +-..|..++..+..+...
T Consensus 67 ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 67 EIQEIRERIKRAEEKL-SAVKDERELRALNIEIQI 100 (239)
T ss_pred HHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHH
Confidence 3334444444444444 112244444444444333
No 87
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=45.58 E-value=2.6e+02 Score=28.36 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLE 80 (330)
Q Consensus 67 ~rLe~l~~r~~eLe 80 (330)
++++.+..|++.+-
T Consensus 7 ~~~~~~~~~~~~~~ 20 (364)
T TIGR00020 7 NRIEDLTSRLDTVR 20 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.89 E-value=2.2e+02 Score=27.45 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGG 183 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG 183 (330)
+..++.++.++.+...|+..+. ++|..-+|-+.-|=|+.+|.--
T Consensus 166 ee~~erlk~le~E~s~LeE~~~--~l~~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLK--KLPGEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHhcccccc
Confidence 3344444444444444443322 2333334445556666666543
No 89
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.82 E-value=1e+02 Score=36.90 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-ccccceEEEEcCCCchH
Q 020135 111 SELRTKQKEIDGLKSLIYE-CSEDKDM---LDMATEELCLAIDEEKRLQSLLLKSLLPKDDA-DERDCILEVRAGTGGEE 185 (330)
Q Consensus 111 ~~l~~~~edl~~l~eLl~e-~~eD~El---~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~-D~~~~ileI~aG~GG~E 185 (330)
..|......+..++++... +=.|++| .+...+.+.+...++.+++.++...---.... ...+.++-+....-+.+
T Consensus 414 ~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~ 493 (1486)
T PRK04863 414 IQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSE 493 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence 4444555555555555531 1123333 33334444444444544444443321000111 12233444455566888
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 186 ASLFAVDVFKMYERYS 201 (330)
Q Consensus 186 a~~~a~~L~~mY~~~a 201 (330)
|..||..+++-|..+-
T Consensus 494 a~~~~~~~~~~~~~~~ 509 (1486)
T PRK04863 494 AWDVARELLRRLREQR 509 (1486)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 9999999998887654
No 90
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=44.79 E-value=97 Score=31.40 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020135 138 DMATEELCLAIDEEKRL 154 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~l 154 (330)
..++..+..+++++..|
T Consensus 86 ~~~~~~~~~le~~L~~l 102 (363)
T COG0216 86 KELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555566666555443
No 91
>PRK09546 zntB zinc transporter; Reviewed
Probab=44.76 E-value=3e+02 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPE-ASPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~-~D~~~~~kl~KE~~~L~~iv 107 (330)
++.-....++.+.++.+++|..+-++. ...++...+.+++..|+..+
T Consensus 151 ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l 198 (324)
T PRK09546 151 LTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYM 198 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 344455677788889999998775432 12234444444444444433
No 92
>PLN02320 seryl-tRNA synthetase
Probab=44.58 E-value=3.5e+02 Score=28.76 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..+.+++..+++++..+++++...+
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776554
No 93
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=43.43 E-value=1.8e+02 Score=30.09 Aligned_cols=57 Identities=25% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI 127 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl 127 (330)
+|=+.|..|+++|-+++=+-.. ...+++ +=..|+..++.+.+|++..+.+.++....
T Consensus 243 RRR~nIN~~IkeLg~liP~~~~---~~~~~n-KgtILk~s~dYIr~Lqq~~q~~~E~~~rq 299 (411)
T KOG1318|consen 243 RRRENINDRIKELGQLIPKCNS---EDMKSN-KGTILKASCDYIRELQQTLQRARELENRQ 299 (411)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc---chhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556778888888887743221 223444 55678888888888887777666665544
No 94
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.08 E-value=2.2e+02 Score=30.50 Aligned_cols=10 Identities=10% Similarity=-0.134 Sum_probs=4.2
Q ss_pred EeeecCCCCC
Q 020135 287 TYRSGGSGGQ 296 (330)
Q Consensus 287 ~~RssG~GGQ 296 (330)
+.+.-+++|+
T Consensus 469 ~l~~q~~l~s 478 (596)
T KOG4360|consen 469 TLAQQPELSS 478 (596)
T ss_pred HHHhcCCCCC
Confidence 3344444443
No 95
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=42.25 E-value=90 Score=31.60 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=57.1
Q ss_pred ceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccccccccceeEEeecCCC
Q 020135 173 CILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLT 252 (330)
Q Consensus 173 ~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~ 252 (330)
-++.+.+|.||.-|.-|-.. | +.-.|- =+-..|..+| +|.+..+- .++..| ++++-+.+.|.-
T Consensus 45 ~rv~~kgG~GG~G~ssf~~~----~---~~~~g~----PdGGdGG~GG--~V~~~a~~-~~~~~l---~~~~s~~~a~~G 107 (366)
T KOG1489|consen 45 RRVRIKGGSGGSGASSFFRG----Y---RRPRGG----PDGGDGGNGG--HVYFVAKP-GAFKQL---SHVGSLIQAPNG 107 (366)
T ss_pred eeEEeeccCCCCccchhhhh----c---ccccCC----CCCCCCCCCc--eEEEEeCc-cccccc---ccCCceEEccCC
Confidence 37899999999988765322 2 221111 0112233455 66666652 344444 477777777765
Q ss_pred CCCCce--EeeeeEEEEecCCC--ccc--------cccCCCCeEEEEeeecCCCC
Q 020135 253 EKSGRV--HTSAVSVAILPQAD--EVD--------VRLRNEDLRIDTYRSGGSGG 295 (330)
Q Consensus 253 ~~~gR~--hts~a~V~v~P~~~--~~~--------~~i~~~dl~i~~~RssG~GG 295 (330)
+..++. |-+.+...+++.+. .+. -++...+-++-..| ||.||
T Consensus 108 e~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~ar-GG~GG 161 (366)
T KOG1489|consen 108 ENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAAR-GGEGG 161 (366)
T ss_pred CcCccccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEee-cCCCC
Confidence 444332 33455444444332 111 24556777888888 67788
No 96
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.64 E-value=4.1e+02 Score=31.53 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELR 101 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~ 101 (330)
|.+..+.+++-+.++...+.+|+.||+..+.+..+.-
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL 1502 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVL 1502 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4444445555566666777778778887777766543
No 97
>PF15605 Toxin_52: Putative toxin 52
Probab=41.37 E-value=1.9e+02 Score=24.39 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~ 111 (330)
+=++-|.+-...+......|+..+.||..+....+.+.+++++-...++.++
T Consensus 47 dHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE 98 (103)
T PF15605_consen 47 DHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIE 98 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999866666666666655555444433
No 98
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=40.84 E-value=87 Score=25.08 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQS 156 (330)
Q Consensus 114 ~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~ 156 (330)
.+...|++++..|+.. ..-+-.++++..|+..++.++..+..
T Consensus 6 ~eL~~Dl~El~~Ll~~-a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 6 EELQLDLEELKSLLEQ-AKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555543 23466788889999999999988863
No 99
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.76 E-value=1.7e+02 Score=27.68 Aligned_cols=15 Identities=7% Similarity=-0.285 Sum_probs=8.0
Q ss_pred HHhhccccccccccc
Q 020135 10 LHLGALRQLESSSSI 24 (330)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (330)
.++-+|-+-||=..+
T Consensus 21 rll~~ge~~~~dr~v 35 (222)
T KOG3215|consen 21 RLLIDGEGDGGDRLV 35 (222)
T ss_pred HHhhcCCCCCCcHHH
Confidence 455566666664433
No 100
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.04 E-value=1.2e+02 Score=31.56 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
...++..++++.+.|...+.. .+++++....+..++.... .+...+..++++...+.+++.++++++...+
T Consensus 46 ~~~~ldeln~~~n~l~k~i~~-~k~kkke~~~~l~~~~~~~--~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~ 116 (455)
T KOG2509|consen 46 TRFELDELNKEKNKLNKEIGD-LKLKKKEDIGQLEESKAKN--TEGAERKLLKEEAVELEEDESKLEDELYEVL 116 (455)
T ss_pred hhHHHHHHHHHHHHhhhHhhH-HHHhhcchhhHHHHhhhHh--hhhhhhhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456777888888888888877 5555544443333444432 2335567778888888888888887776654
No 101
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.81 E-value=3.5e+02 Score=26.09 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCC-------CHHHHHHHHHH
Q 020135 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE-IDGLKSLIYECSE-------DKDMLDMATEE 143 (330)
Q Consensus 72 l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~ed-l~~l~eLl~e~~e-------D~El~e~a~eE 143 (330)
|..-.++|-...--|.+ .+++..+..+|..|..-++.|+.-...+++ ++.+..-..+... .++......+.
T Consensus 162 LL~~ae~L~~vYP~~ga-~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~ 240 (259)
T PF08657_consen 162 LLRGAEKLCNVYPLPGA-REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDED 240 (259)
T ss_pred HHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHH
Confidence 33334444444434443 577888888888888887777655444332 2222111111000 11122355566
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 144 LCLAIDEEKRLQSLLL 159 (330)
Q Consensus 144 l~~l~~~l~~le~~l~ 159 (330)
|+.-++++++||.++.
T Consensus 241 I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 241 IRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777776654
No 102
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=39.80 E-value=74 Score=25.79 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEe-ccc
Q 020135 196 MYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS-GVG 232 (330)
Q Consensus 196 mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~-G~~ 232 (330)
.....+.++||.++-+...+++..|+...++.+. |+.
T Consensus 18 Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 18 RITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 3455667899999999999999999999999997 755
No 103
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=39.75 E-value=2.3e+02 Score=26.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSLL 163 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~Ll 163 (330)
++.+|++.|+. +.++.++...|+
T Consensus 165 ELe~ELe~Le~--e~l~~~ll~~~~ 187 (191)
T PTZ00446 165 EIDKELDLLKE--QTMEEKLLKELI 187 (191)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHh
Confidence 45566666655 455555555543
No 104
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.52 E-value=2.2e+02 Score=23.54 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQ-PEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsd-P~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~ 128 (330)
=+..+.++++....|+..+|..+.+ | +.+...++..++++++.-+ +.+....+.+....+|+-
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LP--t~~dv~~L~l~l~el~G~~---~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLP--TRDDVHDLQLELAELRGEL---KELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHH
Confidence 3445668888889999999988875 3 4677778877777766654 444555555555555553
No 105
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.33 E-value=5.4e+02 Score=30.35 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHH
Q 020135 71 AIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLI 110 (330)
Q Consensus 71 ~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~ 110 (330)
.++.+++++|..+..-..|.++...+.+.+.+++.-++..
T Consensus 838 ~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 838 YLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555553322225555555555566666665555
No 106
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=39.32 E-value=47 Score=29.61 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=30.8
Q ss_pred EEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCccC
Q 020135 286 DTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERS 323 (330)
Q Consensus 286 ~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eRS 323 (330)
+..-..|.++..+-..+|.|||.|..||..+.+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~l 159 (190)
T PF02815_consen 122 EEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKL 159 (190)
T ss_dssp EEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES
T ss_pred EecccCCccCCcEEecccEEEEEECCcCEEEecCCccc
Confidence 33345577888888889999999999999998877665
No 107
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.10 E-value=1.6e+02 Score=27.73 Aligned_cols=61 Identities=13% Similarity=0.307 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKE 119 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~ed 119 (330)
++..++. ++.|++.++...+.|.+++.++. +.++..++.+++++++.-++.++.-...+++
T Consensus 130 vT~~y~D-~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 130 VTEQYVD-LEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555553 56788888888888888888766 6777778888877777665555444433333
No 108
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.78 E-value=4.5e+02 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D 169 (330)
.|++.+..+..++......+...-||.=|.+
T Consensus 414 ~Are~l~~~~~~l~eikR~mek~nLPGlPe~ 444 (570)
T COG4477 414 EARENLERLKSKLHEIKRYMEKSNLPGLPET 444 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 4677777888888888777778888877764
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.68 E-value=3.1e+02 Score=28.49 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGLKSLI 127 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~-~l~~~~edl~~l~eLl 127 (330)
...+.++++.++..++.+++.+.. ..++..++.+++++++.-+...+ ++.....++..+..-+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~---~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIRE---QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 455568999999999999988865 46777888888887776555443 3334444444444433
No 110
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=38.13 E-value=2.1e+02 Score=31.82 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 020135 149 DEEKRLQSLLLKS 161 (330)
Q Consensus 149 ~~l~~le~~l~~~ 161 (330)
++++.|++++...
T Consensus 695 ~kieal~~qik~~ 707 (762)
T PLN03229 695 EKIEALEQQIKQK 707 (762)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 111
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=37.89 E-value=2.9e+02 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHH
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMH 108 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive 108 (330)
+|..+=++|=....+..+.|...+.+|+.+++.-.+..+++..|....+
T Consensus 87 ~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~ 135 (196)
T PF12685_consen 87 YFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKME 135 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4655444555555666788889999999988777777777777666543
No 112
>PRK09039 hypothetical protein; Validated
Probab=37.71 E-value=4e+02 Score=26.56 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 020135 67 QRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsd 85 (330)
+-+....+++++|+.++++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 46 REISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 4556666666666666654
No 113
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=36.88 E-value=1.3e+02 Score=26.08 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeccCCCCCceEEEEEEe
Q 020135 180 GTGGEEASLFAVDVFKMYERYSQKKGW-KFEVVGVTESDLRGYKEASAAIS 229 (330)
Q Consensus 180 G~GG~Ea~~~a~~L~~mY~~~a~~~g~-~~~~i~~~~~~~~g~k~a~~~i~ 229 (330)
|.. +++..+...+++.|.++.+.-|+ .+++.....++.++..+.+..|+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e 167 (173)
T PF00587_consen 118 CTP-EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIE 167 (173)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEE
T ss_pred eCC-cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHH
Confidence 454 89999999999999999999999 99999999888777666655554
No 114
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=36.67 E-value=4.5e+02 Score=28.30 Aligned_cols=85 Identities=22% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMH-LISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL 146 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive-~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~ 146 (330)
++..+..+...+++.+.. -..+-+++.+++++.++--. .+.+.+..+.|++....++..+ ++.+.+|-..
T Consensus 372 ~ie~L~~el~~~e~~lqE---er~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkE------KEql~~EkQe 442 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQE---ERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKE------KEQLQEEKQE 442 (546)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 444444444444443322 12344566666666655442 3344444444444444444321 3456667777
Q ss_pred HHHHHHHHHHHHHHh
Q 020135 147 AIDEEKRLQSLLLKS 161 (330)
Q Consensus 147 l~~~l~~le~~l~~~ 161 (330)
|...+..|+.+|...
T Consensus 443 L~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 443 LLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777655443
No 115
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.59 E-value=2.5e+02 Score=29.64 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCHH-HHHHHHHHHHHHHHHHHHH
Q 020135 103 LRDSMHLISELRTKQKEIDGLKSLIYE------CSEDKD-MLDMATEELCLAIDEEKRL 154 (330)
Q Consensus 103 L~~ive~~~~l~~~~edl~~l~eLl~e------~~eD~E-l~e~a~eEl~~l~~~l~~l 154 (330)
+.++-...+.+....+....+.+|+-+ ...|.| +...+.++.+.+...+-.+
T Consensus 208 ~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrl 266 (594)
T KOG1086|consen 208 LEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRL 266 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444444444554421 122444 5666666666665555433
No 116
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=36.43 E-value=89 Score=27.93 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLL 163 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Ll 163 (330)
.+.-+.++..|+..|+ +.+.++.+. .|+.+ ++++...++.++..|+..|...-+
T Consensus 32 T~~G~~~L~~El~~L~-------------~~i~~Ar~~-------GDlsE-ak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 32 TEAGLKALEDQLAQAR-------------AAYEAAQAI-------EDVNE-RRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHHC-------CChhH-HHHHHHHHHHHHHHHHHHHccCEE
Confidence 6778888888888876 133333322 22333 788888888899999888766654
No 117
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.39 E-value=1.7e+02 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcC
Q 020135 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180 (330)
Q Consensus 132 eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG 180 (330)
++.+..+.+++++.+.+..+.+++ ..+|+. ++.+|.+.=|
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmE-----a~LPkk----NGlyL~liLG 104 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDME-----AFLPKK----NGLYLRLILG 104 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHH-----hhCCCC----CCcccceecc
Confidence 356677777888888777777776 344542 4555555544
No 118
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=35.87 E-value=5.2e+02 Score=26.83 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHH------------HHHHHHHHHHhhcCC
Q 020135 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQ------------KEIDGLKSLIYECSE 132 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~------------edl~~l~eLl~e~~e 132 (330)
.|++.|+.-.++|-+-...=.+ .+.+...+.+++..+..-+..++.+-..+ +.+.+=.+++..
T Consensus 220 ~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~--- 296 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKL--- 296 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3444444444444333222122 56777777777777777666665554333 222222333332
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 020135 133 DKDMLDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 133 D~El~e~a~eEl~~l~~~l~~le 155 (330)
.+++...+.++++.+.+-+..++
T Consensus 297 QedL~~DL~eDl~k~~etf~lve 319 (424)
T PF03915_consen 297 QEDLLSDLKEDLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 14555566666666666555554
No 119
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=35.78 E-value=3.5e+02 Score=31.31 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDS 106 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~---D~~~~~kl~KE~~~L~~i 106 (330)
.++.+.....+|+.++..-.- ...+|+++..++..+...
T Consensus 187 nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~ 228 (1163)
T COG1196 187 NLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA 228 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444332111 345666666666655544
No 120
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.78 E-value=1.8e+02 Score=23.66 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=37.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 97 NKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 97 ~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~ 161 (330)
.+|+..++..+..+ ..+++.+..-+...+-.+|-++.+++|...+.+.+...+++|..+
T Consensus 4 ~~eId~lEekl~~c------r~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 4 AKEIDGLEEKLAQC------RRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHhhHHHHHHHH------HHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555555443333 334444444333223356778888999999999999999888764
No 121
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.70 E-value=4.7e+02 Score=26.24 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQP--EA-SPAEYSKANKELRKLRD-------SMHLISELRTKQKEIDGLKSL 126 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP--~~-D~~~~~kl~KE~~~L~~-------ive~~~~l~~~~edl~~l~eL 126 (330)
|.+.-+..+..|+..+..+++.|.+.-... +. ...+...+..-+..+.+ +++.++.|+..-.+.....+.
T Consensus 258 L~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~ 337 (388)
T PF04912_consen 258 LDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQT 337 (388)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556665555555555332221 11 22344444444444443 455555555555555555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 127 IYECSEDKDMLDMATEELCLAIDEEKRLQSL 157 (330)
Q Consensus 127 l~e~~eD~El~e~a~eEl~~l~~~l~~le~~ 157 (330)
+..- +.....+..++...++-+..++..
T Consensus 338 l~~l---e~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 338 LSEL---ESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 122333444555555555555443
No 122
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.57 E-value=3e+02 Score=29.50 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 58 SNDLIKIMEQRVLAIERRSACLENLV 83 (330)
Q Consensus 58 ~~~l~~~m~~rLe~l~~r~~eLe~~l 83 (330)
+...+.-+++.++..+.+....-+.+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555544444444433
No 123
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.21 E-value=4.7e+02 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 134 KDMLDMATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 134 ~El~e~a~eEl~~l~~~l~~le~~l~~~ 161 (330)
+-+..-+-..+..+..+-..|+.+|...
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445555556666666666666666543
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.58 E-value=3.8e+02 Score=24.93 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020135 137 LDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
.+.|+..+..|+..++.++.+|.
T Consensus 192 ae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 192 AEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554
No 125
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=1.4e+02 Score=33.93 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=43.5
Q ss_pred hcccccccccccccCCCccc--chhhhhhhhcCCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 020135 13 GALRQLESSSSISHRNPLLH--QRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEA 88 (330)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~ 88 (330)
-+.+|++..+.++-.+|-+. +-|.. +.+++....+=++....=++.=+.++..|+++++++++.|+..++.+++
T Consensus 883 ~~i~~l~~~~~v~i~~~~~~~~~g~~~--~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~ 958 (995)
T KOG0432|consen 883 DEISTLTNLELVSISSPAEEDAQGCAL--SVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDY 958 (995)
T ss_pred HHHHHhhccceeEeccCCccccCcceE--eccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34456665555544444332 22332 2333333444444433334445566688999999999999999987776
No 126
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=33.96 E-value=2.4e+02 Score=24.42 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Q 020135 103 LRDSMHLISELRTKQKEIDGLKSLIYECSED-KDMLDMATEELCLAIDEEKRLQ--SLLLKSL 162 (330)
Q Consensus 103 L~~ive~~~~l~~~~edl~~l~eLl~e~~eD-~El~e~a~eEl~~l~~~l~~le--~~l~~~L 162 (330)
++++++.+..+++..+++..+.+-+...+.| .-|-..|..=+.++..++++-+ ++|+..|
T Consensus 5 ~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~L 67 (121)
T PF03310_consen 5 IKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEAL 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 3445556666666777777776655432221 3344555555666777776663 5555554
No 127
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=33.82 E-value=2.3e+02 Score=29.74 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=39.5
Q ss_pred ceEEEEcCCCch---------------HHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEecccccccc
Q 020135 173 CILEVRAGTGGE---------------EASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237 (330)
Q Consensus 173 ~ileI~aG~GG~---------------Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~l 237 (330)
.=|.|++|.||. -=.+|-.-+-+||.-|+-.- -+++ +|.+-|..-
T Consensus 241 ~sL~I~~G~~GarLtH~H~~Qy~yV~QSL~LW~~i~~~mf~LW~~ae---~Dll-----------------~~~~~Y~l~ 300 (458)
T PF09418_consen 241 YSLAIRYGRGGARLTHSHERQYHYVLQSLTLWREIMRDMFRLWYLAE---DDLL-----------------DGSNPYRLR 300 (458)
T ss_pred CCeeeecCCCCCCCCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHhH---HHhc-----------------CCCCceEee
Confidence 569999999995 23578888889999887631 0111 222334443
Q ss_pred ccccceeEEeecCCC
Q 020135 238 KFESGIHRVQRVPLT 252 (330)
Q Consensus 238 k~E~GvHrv~Rvp~~ 252 (330)
..=-|.||||.-|-.
T Consensus 301 ~TGQGl~Rvq~~p~~ 315 (458)
T PF09418_consen 301 NTGQGLNRVQQCPKV 315 (458)
T ss_pred eCCCcHHhhccCChH
Confidence 444788999988853
No 128
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.61 E-value=6.1e+02 Score=26.93 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELR 114 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~ 114 (330)
.++.++++|+.++..|.+.+..+.+.++ -.+-..++..+...|...++.+-.+-
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3566788999999999999999887654 22233344555566666665554443
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.79 E-value=2.6e+02 Score=30.77 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 020135 66 EQRVLAIERRSACLENLVN 84 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~ls 84 (330)
.+|...++.++..|...+.
T Consensus 544 r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666654443
No 130
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.52 E-value=4.2e+02 Score=31.88 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 020135 192 DVFKMYERYSQ 202 (330)
Q Consensus 192 ~L~~mY~~~a~ 202 (330)
+|-.|+..|..
T Consensus 439 eLe~~LenF~a 449 (1486)
T PRK04863 439 NAEDWLEEFQA 449 (1486)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 131
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=32.50 E-value=4.7e+02 Score=26.30 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHc--CCeEEEEeeccCC-CCCceEEEEEEecc------ccccccccccceeEEeecCCCCC
Q 020135 184 EEASLFAVDVFKMYERYSQKK--GWKFEVVGVTESD-LRGYKEASAAISGV------GVYGKLKFESGIHRVQRVPLTEK 254 (330)
Q Consensus 184 ~Ea~~~a~~L~~mY~~~a~~~--g~~~~~i~~~~~~-~~g~k~a~~~i~G~------~ay~~lk~E~GvHrv~Rvp~~~~ 254 (330)
..|..++..+-++..+|.... .++|++-+...+. ..|-.. +.|.-. .+-+.+.+|.|||= .|.-
T Consensus 109 ~~a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~~~--l~I~~~~~fs~~~l~~L~~HEigvH~-----lt~~ 181 (349)
T PF08014_consen 109 LDAEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSGDR--LKINKNAMFSERDLEALLHHEIGVHL-----LTTL 181 (349)
T ss_pred CCHHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccCCe--eEEcCCCCcCHHHHHHHHHHhhhhhh-----cccc
Confidence 345566677777777887766 4555554433233 222222 444432 24578899999995 3556
Q ss_pred CCceEe
Q 020135 255 SGRVHT 260 (330)
Q Consensus 255 ~gR~ht 260 (330)
+|+.|.
T Consensus 182 Ng~~QP 187 (349)
T PF08014_consen 182 NGRAQP 187 (349)
T ss_pred ccccCC
Confidence 677775
No 132
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.85 E-value=3.5e+02 Score=23.68 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 89 SPAEYSKANKELRKLRDSMHLISELRTKQKEID-GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~-~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
++++...+..++..|+.-+...+. ..+.+. ++..|... ..+.| +...+..++.++..++.+|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~---~~k~l~~eL~~L~~~-~t~~e----l~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKK---EVKSLEAELASLSSE-PTNEE----LREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC-CCHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888887766665544433 333322 33333332 12333 445555666666666655544
No 133
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=31.79 E-value=3e+02 Score=22.77 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHhhH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKAN---KELRKLR 104 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~---KE~~~L~ 104 (330)
.|..+++.+.+++.+|+..|....-++.++..+. .|+.+++
T Consensus 26 ~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~~I~~eY~k~K 69 (101)
T PF07303_consen 26 ELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIAQILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 3566788888888888888864332444444444 5555553
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.56 E-value=3.7e+02 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 020135 66 EQRVLAIERRSACLENLVN 84 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~ls 84 (330)
.+.++.+.++..+++..+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 94 QEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 135
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.78 E-value=3.2e+02 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEEKRLQ 155 (330)
Q Consensus 140 a~eEl~~l~~~l~~le 155 (330)
++.|++.++++.+.++
T Consensus 173 ~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 136
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=30.68 E-value=8e+02 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeec
Q 020135 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT 214 (330)
Q Consensus 181 ~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~ 214 (330)
.||.-+....+.+|-.+ ......+-++|..
T Consensus 1076 Sgge~~~~~la~~~~~~----~~~~~~~~~lDE~ 1105 (1164)
T TIGR02169 1076 SGGEKSLTALSFIFAIQ----RYKPSPFYAFDEV 1105 (1164)
T ss_pred CcchHHHHHHHHHHHHH----hcCCCCcEEeccc
Confidence 56776666666555432 1245566666643
No 137
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.61 E-value=6e+02 Score=30.04 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhhHHH
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQPEA----SPAEYSKANKELRKLRDS 106 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP~~----D~~~~~kl~KE~~~L~~i 106 (330)
..++.-..+++++.++++.++..+..-.+ ++...+++.+.++++..-
T Consensus 900 e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 900 EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 34555566777777777777665554433 333444455555554443
No 138
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.59 E-value=3e+02 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHhhcccccccccccccCC
Q 020135 6 WAIALHLGALRQLESSSSISHRN 28 (330)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (330)
|+...+.|+....||+--|+.-+
T Consensus 15 ~~~~~~~g~~a~~~g~~~~~~~~ 37 (475)
T PRK13729 15 WLGIVVVGAAAAIGGALYLSDVD 37 (475)
T ss_pred HHHHHHHHHHHhhhceEEEeccc
Confidence 44446778888888886665544
No 139
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.55 E-value=5.8e+02 Score=29.49 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=7.1
Q ss_pred cccchhhhhhhhcC
Q 020135 30 LLHQRWFVQRAAAT 43 (330)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (330)
|.-+|=-|.+|++.
T Consensus 373 lEqqN~rLKdalVr 386 (1243)
T KOG0971|consen 373 LEQQNARLKDALVR 386 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555543
No 140
>smart00150 SPEC Spectrin repeats.
Probab=30.49 E-value=2.3e+02 Score=21.06 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMATEE 143 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l-~eLl~e~~eD~El~e~a~eE 143 (330)
..+..+...+.+.+..+..+.+ |...+..+.+++..+..-++.. ....+.+..+ ..|+.....+. ..+...
T Consensus 5 ~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~---~~~v~~~~~~~~~L~~~~~~~~---~~i~~~ 78 (101)
T smart00150 5 RDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAH---EERVEALNELGEQLIEEGHPDA---EEIEER 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHcCCCcH---HHHHHH
Confidence 4566677777788777766655 8888888888887777766544 3334444333 34444322232 333344
Q ss_pred HHHHHHHHHHHH
Q 020135 144 LCLAIDEEKRLQ 155 (330)
Q Consensus 144 l~~l~~~l~~le 155 (330)
+..+...-+.+.
T Consensus 79 ~~~l~~~w~~l~ 90 (101)
T smart00150 79 LEELNERWEELK 90 (101)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 141
>PF06864 PAP_PilO: Pilin accessory protein (PilO); InterPro: IPR009663 This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body []. This family does not seem to be related to IPR007445 from INTERPRO.
Probab=30.48 E-value=1e+02 Score=31.31 Aligned_cols=92 Identities=15% Similarity=0.270 Sum_probs=66.8
Q ss_pred ccccceEEE----EcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeec-----cCCCC-----CceEEEEEEeccc--
Q 020135 169 DERDCILEV----RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVT-----ESDLR-----GYKEASAAISGVG-- 232 (330)
Q Consensus 169 D~~~~ileI----~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~-----~~~~~-----g~k~a~~~i~G~~-- 232 (330)
+.-.+.+-+ .+..+|+|+-.=+.+.+.-+..|++++|.++.+-+.. +++.. ..++-+|+|++.-
T Consensus 298 ~~a~~~~p~~~~~~~~~~~de~l~~~~~~l~~l~s~~Q~~~l~~~l~ev~~p~~lpg~~~~~P~~~W~~~~fs~~t~~~P 377 (414)
T PF06864_consen 298 NQASVFLPFTFTAPPTPAGDEALPPASEQLMRLTSHFQRRNLPLKLTEVPPPPPLPGDEQPPPPQDWREYTFSITTDLPP 377 (414)
T ss_pred ceEEEEEeecccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCccccCCCCCCCCCCCCCCCCCCCceeEEEEeecCCCH
Confidence 334567777 7788899988878888888889999999999875433 23322 3788999998633
Q ss_pred --cccccccccceeEEeecCCCCCCCceEeee
Q 020135 233 --VYGKLKFESGIHRVQRVPLTEKSGRVHTSA 262 (330)
Q Consensus 233 --ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~ 262 (330)
.|..+. ..|+ |+.+|..+-+.|+.+|+.
T Consensus 378 ~~l~~~~~-~~Gl-Rl~~i~~~~~~g~l~~~~ 407 (414)
T PF06864_consen 378 DELFAGFD-QPGL-RLTSITYTLNNGQLTYTI 407 (414)
T ss_pred HHHHhhCC-CCce-EEEEEEEEeeCCeEEEEE
Confidence 344433 3777 889998888889888753
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=30.22 E-value=3.3e+02 Score=27.11 Aligned_cols=12 Identities=25% Similarity=0.039 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEE 151 (330)
Q Consensus 140 a~eEl~~l~~~l 151 (330)
+..|+..++++.
T Consensus 274 L~aEL~elqdkY 285 (306)
T PF04849_consen 274 LQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 143
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.09 E-value=3.1e+02 Score=28.08 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCCHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 020135 76 SACLENLVNQPEASPA--EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153 (330)
Q Consensus 76 ~~eLe~~lsdP~~D~~--~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~ 153 (330)
+++||..+..-+. ++ -..++..-...+-++--.|.++......|+++.+ ..-.|-+-+++.-+.+|..++..
T Consensus 10 LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~~-----~s~qeKFl~IR~KlleL~~~lQ~ 83 (379)
T PF11593_consen 10 LEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMNN-----KSPQEKFLLIRSKLLELYNKLQE 83 (379)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccc-----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777765444 22 2233444455566666667666666655533222 22356778888888888888888
Q ss_pred HHHHHHHh
Q 020135 154 LQSLLLKS 161 (330)
Q Consensus 154 le~~l~~~ 161 (330)
|..++..+
T Consensus 84 lS~df~~L 91 (379)
T PF11593_consen 84 LSSDFQKL 91 (379)
T ss_pred HHHHHHHh
Confidence 87665543
No 144
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=29.97 E-value=6.2e+02 Score=26.29 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 020135 190 AVDVFKMYERYSQK 203 (330)
Q Consensus 190 a~~L~~mY~~~a~~ 203 (330)
.+||++.|-..+..
T Consensus 302 lEMLLEaYf~qiD~ 315 (414)
T KOG2662|consen 302 LEMLLEAYFMQIDS 315 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777666653
No 145
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=29.88 E-value=2.4e+02 Score=21.18 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 119 EIDGLKSLIYECSEDKD-MLDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 119 dl~~l~eLl~e~~eD~E-l~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
=.+++..|+..-..|.. .+..|..++.....+++.|+.+|....
T Consensus 16 i~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 16 IKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444432013443 477888888888888888887776654
No 146
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.73 E-value=1.8e+02 Score=26.32 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 020135 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (330)
Q Consensus 87 ~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl 144 (330)
+|.|+...+---++++|-..-+.+..|+........+..++++--.|++.++.+..|+
T Consensus 99 DF~Pd~Ia~qVp~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L~~el 156 (159)
T TIGR03358 99 DFSPDAVAKQVPELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKLLSEL 156 (159)
T ss_pred cCCHHHHHHHhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4677776666666666666666666666666666666666544334555555554443
No 147
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.50 E-value=7.9e+02 Score=28.72 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=37.2
Q ss_pred CCCChHHHHHHHH----------------HHHHHHHHHHHHHHHhcC---CCC--------CHHHHHHHHHHHHhhHHHH
Q 020135 55 EMLSNDLIKIMEQ----------------RVLAIERRSACLENLVNQ---PEA--------SPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 55 ~~~~~~l~~~m~~----------------rLe~l~~r~~eLe~~lsd---P~~--------D~~~~~kl~KE~~~L~~iv 107 (330)
-|-|+.++..++. -++..+.+++|+..++.. |.. .--+++++.+++-+|+++.
T Consensus 155 NMKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ 234 (1174)
T KOG0933|consen 155 NMKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRIC 234 (1174)
T ss_pred cCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777765433 345556667777766653 332 1136677778888888888
Q ss_pred HHHHHHH
Q 020135 108 HLISELR 114 (330)
Q Consensus 108 e~~~~l~ 114 (330)
-+|+=|+
T Consensus 235 ia~eY~~ 241 (1174)
T KOG0933|consen 235 IAYEYLQ 241 (1174)
T ss_pred HHHHHHH
Confidence 8777444
No 148
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.37 E-value=3.6e+02 Score=23.05 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHhhcCC
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEA----SPAEYSKANKELRKLRDSMHLISELRTKQKEID----GLKSLIYECSE 132 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~----D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~----~l~eLl~e~~e 132 (330)
++..|...+..++.++..+...++.-.- -..+..++.++...++.....+..++...++++ .+.+|+.+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE--- 93 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE--- 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 4444444444444444444444332111 124555566666666665555555555555443 44555532
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 020135 133 DKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 133 D~El~e~a~eEl~~l~~~l~ 152 (330)
=.|-.++++.++.++++-++
T Consensus 94 K~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 23344555555555554444
No 149
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=29.31 E-value=5.2e+02 Score=24.78 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020135 106 SMHLISELRTKQKEIDGLKSLIY 128 (330)
Q Consensus 106 ive~~~~l~~~~edl~~l~eLl~ 128 (330)
.|+.++-+..+.++++.|.+++.
T Consensus 45 ~v~il~Ll~~kd~ef~~llkla~ 67 (272)
T KOG4552|consen 45 TVNILKLLDSKDDEFKTLLKLAP 67 (272)
T ss_pred HHHHHHHHHhccHHHHHHHHHhH
Confidence 34555555666666666666654
No 150
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.28 E-value=8.3e+02 Score=27.20 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=8.4
Q ss_pred CChHHHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVL 70 (330)
Q Consensus 57 ~~~~l~~~m~~rLe 70 (330)
+|+.++.--...+.
T Consensus 499 lp~~ii~~A~~~~~ 512 (782)
T PRK00409 499 LPENIIEEAKKLIG 512 (782)
T ss_pred cCHHHHHHHHHHHh
Confidence 77777765444443
No 151
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=28.84 E-value=8.3e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=42.8
Q ss_pred CHHHHHHH-HHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 020135 89 SPAEYSKA-NKELRKLRD--SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 89 D~~~~~kl-~KE~~~L~~--ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~ 152 (330)
+-.+|..+ .-++.+|.. ....-+++.++.++++.+++++. ++..+.+.+.+|+.+..++..
T Consensus 406 s~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~~L~---~~~~~~~~i~~el~~~~~~~g 469 (735)
T TIGR01062 406 SAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEKILK---SERELNQLVKKEIQADATKYG 469 (735)
T ss_pred CHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhC
Confidence 33444443 445566653 35666788888889999999985 356788899999998887765
No 152
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.72 E-value=2.9e+02 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 134 KDMLDMATEELCLAIDEEKRLQSLL 158 (330)
Q Consensus 134 ~El~e~a~eEl~~l~~~l~~le~~l 158 (330)
+++.+.+++.++.++.+++.+++.+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665544
No 153
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=28.31 E-value=5.2e+02 Score=25.32 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=22.6
Q ss_pred hhHHHHHHhhcccccccccccccCCCcccchhhh
Q 020135 4 VNWAIALHLGALRQLESSSSISHRNPLLHQRWFV 37 (330)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (330)
--|.+++++|+++.....+.++.+.| ++.-+-+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~v 41 (370)
T PRK11578 9 KRYLIALVIVLAGGITLWRILNAPVP-TYQTLIV 41 (370)
T ss_pred hhHHHHHHHHHHHHhhheeecCCCCC-ceEEEEE
Confidence 35788888999888777776665555 5554443
No 154
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=28.13 E-value=2.5e+02 Score=20.84 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~e 142 (330)
....++.+...+...+..+..+.. |+..+....+++..+..-+.. ....++.+.+.-+-+.. ..+.-...+..
T Consensus 6 f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~---~~~~l~~l~~~~~~L~~--~~~~~~~~i~~ 80 (105)
T PF00435_consen 6 FQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIES---RQERLESLNEQAQQLID--SGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--TTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHH--cCCCcHHHHHH
Confidence 345777888888999999866654 777777777776666665544 44444444444333322 12333345555
Q ss_pred HHHHHHHHHHHHHHH
Q 020135 143 ELCLAIDEEKRLQSL 157 (330)
Q Consensus 143 El~~l~~~l~~le~~ 157 (330)
.+..+......+...
T Consensus 81 ~~~~l~~~w~~l~~~ 95 (105)
T PF00435_consen 81 KLEELNQRWEALCEL 95 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655555443
No 155
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.15 E-value=7.8e+02 Score=29.41 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKE 99 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE 99 (330)
++|.-|.-+...+.+....+..++..|+...-|..++..|..+
T Consensus 1508 ~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~ 1550 (1758)
T KOG0994|consen 1508 LTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSE 1550 (1758)
T ss_pred CCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHH
Confidence 4555554444555555556666777776543355555444443
No 156
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=26.75 E-value=6.4e+02 Score=29.71 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHH--------HHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYS--------KANKELRKLRDS----MHLISELRTKQKEIDGLKSLI 127 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~--------kl~KE~~~L~~i----ve~~~~l~~~~edl~~l~eLl 127 (330)
+-+-+..++.++.+.++.|+..+.-|-+ |+++.+ .+.|++..|+.+ ++.++++...++.+++-..++
T Consensus 1064 Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklL 1143 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLL 1143 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667888888889999988888877 665443 344555555543 344444444444444333444
Q ss_pred hhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 128 YEC----SEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164 (330)
Q Consensus 128 ~e~----~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp 164 (330)
..+ -.+.+-.+ -.+++.|++++..+..+|...+++
T Consensus 1144 RnEK~Rmh~~~dkVD--FSDIEkLE~qLq~~~~kL~dAyl~ 1182 (1439)
T PF12252_consen 1144 RNEKIRMHSGTDKVD--FSDIEKLEKQLQVIHTKLYDAYLV 1182 (1439)
T ss_pred HhHHHhhccCCCccc--HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 210 00111111 256677777777777666555543
No 157
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.44 E-value=3.7e+02 Score=25.11 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 92 EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYEC-SEDKDM---LDMATEELCLAIDEEKRLQSLLLKSLL 163 (330)
Q Consensus 92 ~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~-~eD~El---~e~a~eEl~~l~~~l~~le~~l~~~Ll 163 (330)
+...+.+.+..+...+..++.+. +++++|+.++... +....+ ...++.|...+..++..|+.+-...+.
T Consensus 44 e~~~L~~q~~s~Qqal~~aK~l~---eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~ 116 (193)
T PF14662_consen 44 EITDLRKQLKSLQQALQKAKALE---EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLA 116 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556666666666665555555 4555555554321 112333 234566777788888888776665553
No 158
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=26.11 E-value=5.2e+02 Score=28.90 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 020135 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 106 ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~ 152 (330)
+...-+++.++.++++.++.++. ++..+.+.+.+|+.++.++..
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~---~~~~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILA---SEERVLEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHhC
Confidence 44556777788888888999885 357888999999999888774
No 159
>PRK05560 DNA gyrase subunit A; Validated
Probab=25.96 E-value=5.1e+02 Score=28.92 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHhhHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 020135 100 LRKLRD--SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 100 ~~~L~~--ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~ 152 (330)
+.+|.. +...-+++.++.+++++++.++. ++..+.+.+.+|+.+++++..
T Consensus 424 L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~---~~~~l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 424 LQRLTGLERDKIEDEYKELLALIADLKDILA---SPERLLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhC
Confidence 444443 45566777788888888888885 357888999999999888875
No 160
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=25.92 E-value=1.3e+02 Score=25.02 Aligned_cols=40 Identities=3% Similarity=-0.126 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccccccc
Q 020135 197 YERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGK 236 (330)
Q Consensus 197 Y~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ay~~ 236 (330)
....+.++||.++-+...+.+..|+...++.+.++.....
T Consensus 25 IaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Q 64 (96)
T PRK08178 25 VCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQ 64 (96)
T ss_pred HHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHH
Confidence 3455567999999999999999999999999987665433
No 161
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=25.90 E-value=3.5e+02 Score=21.65 Aligned_cols=84 Identities=8% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~ 145 (330)
...+..++..|........... +..++..+.++ +-..+..+...++|++....++. .+++-+.+-..|+.
T Consensus 11 ~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~e------L~~~l~~ie~~L~DL~~aV~ive---~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 11 QSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRE------LRNALQSIEWDLEDLEEAVRIVE---KNPSKFNLSEEEIS 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---CCHHHHT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---hCccccCCCHHHHH
Confidence 3455555566666665555443 34444444443 34456666777778887777774 46887788888888
Q ss_pred HHHHHHHHHHHHHH
Q 020135 146 LAIDEEKRLQSLLL 159 (330)
Q Consensus 146 ~l~~~l~~le~~l~ 159 (330)
.-..-+..++.++.
T Consensus 81 ~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 81 RRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876654
No 162
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=25.78 E-value=2e+02 Score=33.08 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020135 60 DLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRT 115 (330)
Q Consensus 60 ~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~ 115 (330)
.-+..+...++.++++++.++..+++++| .-.....+.++..++...-+.+.++.+
T Consensus 842 ~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~ 898 (1052)
T PRK14900 842 AETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEA 898 (1052)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999987 222223334444444433333333333
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.74 E-value=6.6e+02 Score=24.83 Aligned_cols=67 Identities=27% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 92 EYSKANKELRKLRDSMHLISELR-TKQKEIDGLKSLIYE-CSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (330)
Q Consensus 92 ~~~kl~KE~~~L~~ive~~~~l~-~~~edl~~l~eLl~e-~~eD~El~e~a~eEl~~l~~~l~~le~~l 158 (330)
....+.+....+..++..+.+.. ....++..+.+...+ +.-|++....+++++.....++.....++
T Consensus 159 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 159 DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666554443332 223333334333322 12377777777777777666665554443
No 164
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.64 E-value=1.1e+03 Score=29.33 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMH 108 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive 108 (330)
|+.-.+.-..|+.+|.....|+ |+..+.++..+..+|+.-..
T Consensus 1283 l~~e~~~wK~R~q~L~~k~k~~--d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1283 LEEENDRWKQRNQDLLEKYKDS--DKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667777666665 46777777777777765443
No 165
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=25.28 E-value=5e+02 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.9
Q ss_pred EEEEcCCCc--hHHHHHHHHHHHHHHHHHHHcCCeEEEE
Q 020135 175 LEVRAGTGG--EEASLFAVDVFKMYERYSQKKGWKFEVV 211 (330)
Q Consensus 175 leI~aG~GG--~Ea~~~a~~L~~mY~~~a~~~g~~~~~i 211 (330)
+.-+.|..| .+|-.|..++.+||...+..+..-+..+
T Consensus 115 ~~~r~~~~PSlAdmLewl~di~r~y~~~yl~k~~lL~~l 153 (168)
T PF15011_consen 115 LQQRSGVCPSLADMLEWLQDIERMYRSEYLLKKSLLSSL 153 (168)
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555 4688999999999997666654444444
No 166
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=25.27 E-value=5.8e+02 Score=24.06 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred hhHHHHHHhhcccccccccccccCCCcccchhhhhhhhcC---CCCccccc
Q 020135 4 VNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAAT---PSLSNFRS 51 (330)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 51 (330)
.||-++---=|-+.. |.--+...-|.+.-+|--++.++. |+..|.+.
T Consensus 19 ~n~~~~a~s~ap~Sr-G~~~~~P~~~~~~~RwP~h~~il~~~~pP~~w~~~ 68 (225)
T KOG4848|consen 19 RNWRLLARSFAPNSR-GSEEIAPKVDVSFLRWPRHRIILAGGMPPVQWDSE 68 (225)
T ss_pred HHHHHHHHHhCCCCC-CccccCCCCCCCCCCCCcHHHHHcCCCCChhhhhc
Confidence 367655544455566 667788888999999977774444 45555554
No 167
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.27 E-value=5.5e+02 Score=23.74 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKA-NKELRKLR--DSMHLISELRTKQKEIDGLKSLIYECSEDKDML 137 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl-~KE~~~L~--~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~ 137 (330)
++.-+..+++.++++++++...+.--..|.+.+++- .++..... .+...++.+.-..++++-+.+.. ..++++.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~---~~~~~~~ 114 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIE---ADDEQTK 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccchHH
Confidence 444466677777888877765553221134444432 23332222 22333444444444444433322 1223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSLLP--KDDADE 170 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~Llp--~d~~D~ 170 (330)
. +.+-++.+..++.+.-++.-..-++ .+++|.
T Consensus 115 ~-i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP 148 (191)
T PRK14140 115 S-LLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDP 148 (191)
T ss_pred H-HHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCCh
Confidence 2 2334444444444443333233333 245665
No 168
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=25.25 E-value=5.2e+02 Score=23.51 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 106 ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
.+..+.+...+..+|+....-+. ++-+...+.++.+.++.+.+..+++.+..
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~---d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLK---DNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh---hhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555544433332 23455677888888888888888876643
No 169
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=25.09 E-value=2.1e+02 Score=22.90 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 020135 90 PAEYSKANKELRKLRDSM 107 (330)
Q Consensus 90 ~~~~~kl~KE~~~L~~iv 107 (330)
.++..++..+|++++++.
T Consensus 38 v~~hI~lLheYNeiKD~g 55 (83)
T PF07061_consen 38 VKRHIKLLHEYNEIKDIG 55 (83)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 345555666666666554
No 170
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=24.89 E-value=1.5e+02 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS 89 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D 89 (330)
-+..+++-+.++++.++.|+..+|.-....+|+
T Consensus 81 ~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f~ 113 (121)
T TIGR02978 81 SPRQALREVKREFRDLERRLRNMERYVTSDTFR 113 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 456688889999999999999999999888874
No 171
>PF13514 AAA_27: AAA domain
Probab=24.82 E-value=3.2e+02 Score=31.40 Aligned_cols=12 Identities=33% Similarity=0.171 Sum_probs=8.0
Q ss_pred HHHhhccccccc
Q 020135 9 ALHLGALRQLES 20 (330)
Q Consensus 9 ~~~~~~~~~~~~ 20 (330)
-+||+||.-+||
T Consensus 116 ~~Lf~agaG~~~ 127 (1111)
T PF13514_consen 116 QLLFSAGAGLGS 127 (1111)
T ss_pred HHHHHhcccccc
Confidence 357888865555
No 172
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=24.80 E-value=5e+02 Score=29.81 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 020135 106 SMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 106 ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~ 152 (330)
+...-+++.++.++++.+++++. ++..+.+.+.+|+.++.++..
T Consensus 448 ~~kl~~E~~eL~~~I~~l~~iL~---~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 448 IVAFEKEYKELEKLIKKLTKILS---SEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhC
Confidence 35566778888888889999985 357789999999999988875
No 173
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.52 E-value=1.7e+02 Score=26.80 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 020135 87 EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (330)
Q Consensus 87 ~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl 144 (330)
+|+|+...+---++++|-+.-+.+..|+........+.+++++--.|+++++.+..|+
T Consensus 104 DFsP~~Va~qVp~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L~~e~ 161 (169)
T COG3516 104 DFSPDAVARQVPELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKLASEL 161 (169)
T ss_pred cCCHHHHHHhhHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHHHHhh
Confidence 5677766555555555555555555555555555555555543223555555444443
No 174
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=24.52 E-value=1.9e+02 Score=30.24 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred ccceEEEEcCCCchHHHH-HHH---H-HHHHHHHHHHHcCCeEEEEeeccC
Q 020135 171 RDCILEVRAGTGGEEASL-FAV---D-VFKMYERYSQKKGWKFEVVGVTES 216 (330)
Q Consensus 171 ~~~ileI~aG~GG~Ea~~-~a~---~-L~~mY~~~a~~~g~~~~~i~~~~~ 216 (330)
.+|+.=..||+||=+|.. ++. + +-.....|.. -.+..++..+.
T Consensus 395 ~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~---~~V~pL~v~~~ 442 (454)
T TIGR01219 395 EGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSS---HNVLALDVREA 442 (454)
T ss_pred CCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhh---CCEEEEecccc
Confidence 578888999999988765 222 2 4555666732 44555655543
No 175
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=6.3e+02 Score=24.05 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 020135 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYE----CSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKD 166 (330)
Q Consensus 91 ~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e----~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d 166 (330)
.+..+...-+-++-.+.....++....--.--+.||+++ -++++||-+.+.+|++.+..++. ..-++.-
T Consensus 108 tevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it-------~~~~~~~ 180 (227)
T KOG3229|consen 108 TEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEIT-------GEKAGEA 180 (227)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHh-------ccccccC
Confidence 333333444444555555555555544444444555532 13345677778777777655544 2223333
Q ss_pred CCccccceEEEE-----cCCCchHHHH---HHHHHHHHHHHHHHHc
Q 020135 167 DADERDCILEVR-----AGTGGEEASL---FAVDVFKMYERYSQKK 204 (330)
Q Consensus 167 ~~D~~~~ileI~-----aG~GG~Ea~~---~a~~L~~mY~~~a~~~ 204 (330)
|.........+. |+.+-.++.+ --.+|..|-.|.|.-+
T Consensus 181 p~a~~~~~~~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lr 226 (227)
T KOG3229|consen 181 PLAVTATLAAVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALR 226 (227)
T ss_pred CcchHHHHhcCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhc
Confidence 332222222222 2222122211 1245888888887643
No 176
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=23.75 E-value=1e+03 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 020135 107 MHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKR 153 (330)
Q Consensus 107 ve~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~ 153 (330)
...-+++..+.++++.+++++. ++..+.+.+.+|+.++.++...
T Consensus 430 ~kl~~e~~~l~~~i~~l~~iL~---~~~~~~~~i~~el~~ik~kfg~ 473 (738)
T TIGR01061 430 FELKEEQNELEKKIISLEQIIA---SEKARNKLLKKQLEEYKKQFAQ 473 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777888888888888885 3578899999999998888753
No 177
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=23.74 E-value=1.2e+02 Score=22.75 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=22.3
Q ss_pred HcCCeEEEEeeccCCCCC-ceEEEEEEeccccccccccccceeEEe
Q 020135 203 KKGWKFEVVGVTESDLRG-YKEASAAISGVGVYGKLKFESGIHRVQ 247 (330)
Q Consensus 203 ~~g~~~~~i~~~~~~~~g-~k~a~~~i~G~~ay~~lk~E~GvHrv~ 247 (330)
+.|+++.+++..+.- +| ..+. .+.| ..++.|.|.+.
T Consensus 17 ~~g~~v~v~E~~~~~-GG~~~~~--~~~g------~~~d~g~~~~~ 53 (68)
T PF13450_consen 17 KAGYRVTVFEKNDRL-GGRARSF--RIPG------YRFDLGAHYFF 53 (68)
T ss_dssp HTTSEEEEEESSSSS-SGGGCEE--EETT------EEEETSS-SEE
T ss_pred HCCCcEEEEecCccc-CcceeEE--EECC------EEEeeccEEEe
Confidence 359999999977443 44 3333 3333 47788888764
No 178
>PHA02414 hypothetical protein
Probab=23.40 E-value=4.5e+02 Score=22.15 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHH
Q 020135 69 VLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELR 114 (330)
Q Consensus 69 Le~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~ 114 (330)
+..+..+.+.|+..+...+. +-.....+.++.++|++++-.+++-.
T Consensus 6 in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~ 52 (111)
T PHA02414 6 INNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDV 52 (111)
T ss_pred HHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHh
Confidence 44566677778877777665 44455677888888888887665433
No 179
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.31 E-value=1.1e+03 Score=27.61 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020135 138 DMATEELCLAIDEEKRLQSLL 158 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l 158 (330)
.-+..++..++.+++.++.++
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l 815 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKL 815 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334666666777777666433
No 180
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.27 E-value=4.7e+02 Score=23.07 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhh
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKL 103 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L 103 (330)
...+..++++++.++-++++.-.. +-.++.++.+++.++
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl 78 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKL 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 345667788888888888775432 223444444444433
No 181
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.15 E-value=3.7e+02 Score=27.95 Aligned_cols=51 Identities=14% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC---CH---HHHHHHHHHHHhhHHHHHHHHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEA---SP---AEYSKANKELRKLRDSMHLISE 112 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~---D~---~~~~kl~KE~~~L~~ive~~~~ 112 (330)
..++.+|++.|+++++.+++.+.+-.. ++ .+...+.++...|+..++.++.
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 221 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLEN 221 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999988876332 22 3444444444444444444333
No 182
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=23.00 E-value=88 Score=28.49 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=33.3
Q ss_pred EEeeccCC-CCCceEEEEEEeccccccccccccceeE-EeecCC
Q 020135 210 VVGVTESD-LRGYKEASAAISGVGVYGKLKFESGIHR-VQRVPL 251 (330)
Q Consensus 210 ~i~~~~~~-~~g~k~a~~~i~G~~ay~~lk~E~GvHr-v~Rvp~ 251 (330)
+++...|+ .+.+..+++..+|+.+.+.|-.+.|+|+ -|.+|.
T Consensus 12 Vys~~tg~~lg~V~Dvif~~~gdrvl~flvnkggwfh~h~~lp~ 55 (176)
T COG3881 12 VYSTKTGEKLGAVDDVIFNFSGDRVLGFLVNKGGWFHKHCCLPV 55 (176)
T ss_pred eEEecccccccceeeEEEecCCCeEEEEEEecCcEEeeeeeeee
Confidence 35555454 4669999999999999999999999766 777775
No 183
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.91 E-value=4.7e+02 Score=23.73 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 020135 142 EELCLAIDEEKRLQ 155 (330)
Q Consensus 142 eEl~~l~~~l~~le 155 (330)
..+..|+..+.+++
T Consensus 132 ~~l~~le~~~~~~e 145 (175)
T PRK13182 132 ERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677777655
No 184
>PRK01156 chromosome segregation protein; Provisional
Probab=22.76 E-value=9.8e+02 Score=26.52 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=17.9
Q ss_pred ccccCCCCCChHH----HHHHHHHHHHHHHHHHHHHHHh
Q 020135 49 FRSYSTEMLSNDL----IKIMEQRVLAIERRSACLENLV 83 (330)
Q Consensus 49 ~~~~~~~~~~~~l----~~~m~~rLe~l~~r~~eLe~~l 83 (330)
.||...+++++.+ +.-....+..++.++++|++.+
T Consensus 454 ~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 454 VCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred CCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565555555443 3334445555555555555443
No 185
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=22.72 E-value=1.2e+03 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHH
Q 020135 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELR 114 (330)
Q Consensus 70 e~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~ 114 (330)
+.|++|++.++-+..+|.+ ..+.....+++-+|+.++..+..-.
T Consensus 591 ~~I~~R~dav~~l~~~~~~-~~~~~e~l~klPDlERlL~Rih~~~ 634 (1125)
T KOG0217|consen 591 EDIKQRQDAVDSLGKAPMD-RTKVGETLKKLPDLERLLVRIHNGG 634 (1125)
T ss_pred HHHHHHHHHHHHHhcCchh-HHHHHHHHhhCCcHHHHHHHHHhcC
Confidence 5588888888888887763 4555555555555555555544433
No 186
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.71 E-value=9.3e+02 Score=25.49 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH-HHHhcCCCC-----CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACL-ENLVNQPEA-----SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLK 124 (330)
Q Consensus 67 ~rLe~l~~r~~eL-e~~lsdP~~-----D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~ 124 (330)
.+.+.+.+.+.++ +..+.++.. ...+...+.+|+.....+++..+.+....+-+..+.
T Consensus 53 ~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 53 ERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVE 116 (593)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555333 222444422 335666777777766666665555554444444333
No 187
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=22.67 E-value=80 Score=22.30 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.6
Q ss_pred CceEEEEEeCCeeEEEecCcc
Q 020135 302 NSAVRVTHIPTGMTISIQDER 322 (330)
Q Consensus 302 ~saVritH~PTGi~v~~~~eR 322 (330)
.+.|||.|.-||--..+.+.+
T Consensus 7 g~~vrL~H~~tg~yL~s~~~~ 27 (57)
T smart00472 7 GDVVRLRHVTTGRYLHSHENK 27 (57)
T ss_pred CCEEEEEEhhhCcEeecCCCC
Confidence 489999999999777777766
No 188
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.59 E-value=8.3e+02 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020135 67 QRVLAIERRSACLENLV 83 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~l 83 (330)
.++..++.+++++....
T Consensus 254 ~~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 254 GRIEALEKQLDALRLRY 270 (498)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444433
No 189
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.58 E-value=7.3e+02 Score=24.26 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 133 DKDMLDMATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 133 D~El~e~a~eEl~~l~~~l~~le~~l~ 159 (330)
.|++.. ++.++..++.++.....++.
T Consensus 241 ~P~v~~-l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 241 NPQVPS-LQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred CCchHH-HHHHHHHHHHHHHHHHHHhh
Confidence 566654 56677778777777664443
No 190
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.53 E-value=1.1e+03 Score=27.47 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 020135 69 VLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL 123 (330)
Q Consensus 69 Le~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l 123 (330)
|..++.+-..|+..+.. .......+-.+...|.+.|+.|.+-......++.+
T Consensus 183 L~~lr~~e~~Le~~~~~---~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l 234 (1072)
T KOG0979|consen 183 LMDLREDEKSLEDKLTT---KTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL 234 (1072)
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554432 45667777788888888888888777777766655
No 191
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.52 E-value=1.3e+03 Score=27.13 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 94 SKANKELRKLRDSMHLISELRT-KQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (330)
Q Consensus 94 ~kl~KE~~~L~~ive~~~~l~~-~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l 158 (330)
.+...++..|+.-|+.+..... +.++++++.+=+.+ +.+-+.-.+.++..+...++.....|
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~---~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE---EEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444332 22233333332221 22223334555666666665555443
No 192
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.49 E-value=1.1e+03 Score=26.26 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-eEEEEcCCCchHHHHHHHHHHHHHHHHHHH
Q 020135 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDC-ILEVRAGTGGEEASLFAVDVFKMYERYSQK 203 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~-ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~ 203 (330)
..++..++.+=+.+...+...++ .+.++.+++ +|.++-|.+ ..+.-..+.-+.+...++++
T Consensus 509 ~ke~~~Le~En~rLr~~~e~~~l-~gd~~~~~~rVl~~~~npt-~~~~~~~k~~~e~LqaE~~~ 570 (716)
T KOG4593|consen 509 LKELELLEEENDRLRAQLERRLL-QGDYEENITRVLHMSTNPT-SKARQIKKNRLEELQAELER 570 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhccceeeecCCch-HHHHHHHHHHHHHHHHHHHH
Confidence 33444454444445544444443 677777776 788887763 46666667667777777765
No 193
>PRK02224 chromosome segregation protein; Provisional
Probab=22.46 E-value=8.5e+02 Score=26.80 Aligned_cols=8 Identities=38% Similarity=0.293 Sum_probs=4.2
Q ss_pred eEEEEEeC
Q 020135 304 AVRVTHIP 311 (330)
Q Consensus 304 aVritH~P 311 (330)
-+=|+|-|
T Consensus 847 viiish~~ 854 (880)
T PRK02224 847 IVVVSHDD 854 (880)
T ss_pred EEEEECCh
Confidence 44555654
No 194
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.35 E-value=4.4e+02 Score=21.60 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLIS 111 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~ 111 (330)
.+..+..++..+...+..-...-.++....+++..|.+-...|+
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk 54 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYK 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH
Confidence 33344444444443333222233445555666666655444444
No 195
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.33 E-value=3.4e+02 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEEKRLQ 155 (330)
Q Consensus 140 a~eEl~~l~~~l~~le 155 (330)
.+.+++.++++++.++
T Consensus 161 le~e~ee~~erlk~le 176 (290)
T COG4026 161 LEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445554444
No 196
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.27 E-value=6.6e+02 Score=25.64 Aligned_cols=22 Identities=36% Similarity=0.264 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 020135 140 ATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 140 a~eEl~~l~~~l~~le~~l~~~ 161 (330)
+.+++.++.+++..+++.+...
T Consensus 387 l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 387 LKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555554443
No 197
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.13 E-value=1.3e+03 Score=26.96 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEID 121 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~ 121 (330)
-+......+..+..++..++..|.++++....+...-..+...-+...........+.
T Consensus 439 ~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 496 (1201)
T PF12128_consen 439 ELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQ 496 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677778888888889988887777766666666555444444444444443
No 198
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.01 E-value=3.5e+02 Score=25.90 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHH-HHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDS-MHLISELRTK 116 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~i-ve~~~~l~~~ 116 (330)
-...|++++..-=+..+.|..|||+++... ..+...+..|+..|+.- +..|++.+..
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~---~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQ---QQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888887888999999999988752 34556677777777655 5555555433
No 199
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=21.92 E-value=6.1e+02 Score=23.04 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 134 KDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 134 ~El~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..=+.-|+++++.+.+..+.+-..|...|
T Consensus 148 ~~kl~kae~~l~~a~~~y~~lN~~Lk~eL 176 (216)
T cd07599 148 EKQLAKLERKLEEAKEEYEALNELLKSEL 176 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345567778888888777776666654
No 200
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=21.88 E-value=86 Score=27.91 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=18.8
Q ss_pred CceEEEEEeCCeeEEEecCccChh
Q 020135 302 NSAVRVTHIPTGMTISIQDERSQH 325 (330)
Q Consensus 302 ~saVritH~PTGi~v~~~~eRSQ~ 325 (330)
.+.|||.|++||--..+.+.+++.
T Consensus 68 g~~iRL~H~~Tg~yL~~~~~~~p~ 91 (190)
T PF02815_consen 68 GDVIRLRHLSTGKYLHSHDVKSPI 91 (190)
T ss_dssp TSEEEEEETTTS-EEEEEEEEECC
T ss_pred CCEEEEEEccCCCEEEEccccccc
Confidence 789999999999877777766543
No 201
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=21.84 E-value=5.5e+02 Score=22.57 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 111 SELRTKQKEID-GLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 111 ~~l~~~~edl~-~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
+++-...+.+. .+..|... ..+++|++.++.-+.+.+.+++.|+.-+..
T Consensus 9 ~d~y~aE~Q~~~al~~m~~~-a~~peLk~~l~~H~~eT~~qi~rLe~if~~ 58 (147)
T cd07909 9 RDLYSAEKQLVKALPKMAKA-ATSEELKEAFESHLEETEGQVERLEQIFES 58 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334433 33455543 579999999999999999999999965554
No 202
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.56 E-value=5.4e+02 Score=22.37 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLI 110 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~ 110 (330)
.|.+.++.+++.++.....- -.+...+.++...|..-++.+
T Consensus 14 ~r~e~~e~~~K~le~~~~~~---E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQK---EQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665544331 234455666666665544433
No 203
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.41 E-value=8.7e+02 Score=28.34 Aligned_cols=93 Identities=24% Similarity=0.182 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---hh-cCCCHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLI---YE-CSEDKDMLDMA 140 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~---D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl---~e-~~eD~El~e~a 140 (330)
+-+.|..-+..++..|..-.- +-.+|+++-|+...|+-.+- =+++.....++..+.+.- .+ ++.+.+-..-+
T Consensus 185 K~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiY-drEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~ 263 (1200)
T KOG0964|consen 185 KREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIY-DRELNEINGELERLEEDRSSAPEESEQYIDALDKV 263 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhh-hhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 334455555555555543221 55678888888777765431 122233333333333322 11 11223345557
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 020135 141 TEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~ 161 (330)
.++++.+..++.+++.+|..+
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l 284 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNL 284 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777666554
No 204
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.88 E-value=4.4e+02 Score=26.66 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=17.7
Q ss_pred eEEEEcCCCchHHHHHHHHHHHHH-HHHHHHcCCeE
Q 020135 174 ILEVRAGTGGEEASLFAVDVFKMY-ERYSQKKGWKF 208 (330)
Q Consensus 174 ileI~aG~GG~Ea~~~a~~L~~mY-~~~a~~~g~~~ 208 (330)
..-+-+|+-..-...-+..++... ++||..+|++.
T Consensus 317 ~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ 352 (406)
T PF02388_consen 317 AYYLYGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKR 352 (406)
T ss_dssp EEEEEEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SE
T ss_pred EEEEECccchhhHhcCcchHHHHHHHHHHHHCCCCE
Confidence 333455554443333344443333 37899999885
No 205
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=20.70 E-value=2.1e+02 Score=30.95 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=31.7
Q ss_pred cchhhhhhhhcCC----CCccccccCCCC----------CChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 32 HQRWFVQRAAATP----SLSNFRSYSTEM----------LSNDLIKIMEQRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 32 ~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~l~~~m~~rLe~l~~r~~eLe~~lsd 85 (330)
-.-|+|+..|++. ..+|...+|.-+ ++++.. .+.+++..+..++++|+....=
T Consensus 407 dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~-~~~~~~~~lL~~~~el~~iv~l 473 (578)
T TIGR01043 407 KVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWR-EMRDEAMDLLQKESELQEIVQL 473 (578)
T ss_pred CcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 3458887766653 333333333322 455544 3556777788888888876653
No 206
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=20.62 E-value=6.7e+02 Score=23.04 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVN-----QPEASPAEYSKAN 97 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~ls-----dP~~D~~~~~kl~ 97 (330)
..+..+..+++++..++. -|.+|..-|++..
T Consensus 27 ~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~v 62 (172)
T KOG3366|consen 27 AEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVV 62 (172)
T ss_pred HHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHh
Confidence 355667778888776664 2456998888876
No 207
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.56 E-value=2.1e+02 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 020135 61 LIKIMEQRVLAIERRSACLENLV 83 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~l 83 (330)
.+..+..+|+.+.+|++.||..+
T Consensus 24 ~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 24 ALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556677888888888888764
No 208
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.46 E-value=96 Score=23.45 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 020135 65 MEQRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsd 85 (330)
+++||..+++|+.+.|++..+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888776654
No 209
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.34 E-value=2.1e+02 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQPEAS 89 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D 89 (330)
-+..+++-+.++++.++.|+..+|.-....+|+
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f~ 110 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERYVTSDTFT 110 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 455588889999999999999999999888874
No 210
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=20.27 E-value=4.9e+02 Score=24.75 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 131 SEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 131 ~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
+.++.+.++.++|++++++.-.+.-+.++.
T Consensus 183 ~~~~sF~~~l~~ql~~l~~~r~e~~~~~~~ 212 (219)
T PRK13415 183 TTLPSFSALLKEELKELKEKRSEGLKRLKK 212 (219)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999888877655554
No 211
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=87 Score=30.49 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.1
Q ss_pred CCCceEeeeeEEEEecCC
Q 020135 254 KSGRVHTSAVSVAILPQA 271 (330)
Q Consensus 254 ~~gR~hts~a~V~v~P~~ 271 (330)
..||+.++.|+|.|.|-.
T Consensus 153 ~~g~rK~a~A~V~v~~Gt 170 (275)
T KOG1697|consen 153 AVGRRKCARATVKVQPGT 170 (275)
T ss_pred eccceecceeEEEEecCc
Confidence 357788899999997764
No 212
>KOG2260 consensus Cell division cycle 37 protein, CDC37 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.17 E-value=4.3e+02 Score=27.06 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=23.9
Q ss_pred CcccchhhhhhhhcCCCCccccccCCCCCChHHHH
Q 020135 29 PLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIK 63 (330)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 63 (330)
||+|+.|---++.-+++.+-|.+. =.+.|++
T Consensus 2 ~iDySkwd~iElSDDeD~evHPNi----D~~Sl~r 32 (372)
T KOG2260|consen 2 AIDYSKWDKIELSDDEDVEVHPNI----DKPSLIR 32 (372)
T ss_pred CCCcccccccccccccccccCCCC----CchhhhH
Confidence 799999999888888877777776 2555664
No 213
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=20.05 E-value=65 Score=29.92 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=0.0
Q ss_pred ecCCCCCCC----------------------------cccCceEEEEEeCCeeEEEecCccChhhh
Q 020135 290 SGGSGGQHA----------------------------NTTNSAVRVTHIPTGMTISIQDERSQHMV 327 (330)
Q Consensus 290 ssG~GGQ~V----------------------------Nkt~saVritH~PTGi~v~~~~eRSQ~~N 327 (330)
+||.|-|.| =|.-.+||++|+-||--.-+.-.-|.+.+
T Consensus 51 GSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPlSg 116 (211)
T KOG3358|consen 51 GSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPLSG 116 (211)
T ss_pred cCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeecccchhhcccCCCCCC
Done!