Query 020135
Match_columns 330
No_of_seqs 249 out of 1556
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 100.0 7E-87 2.4E-91 647.6 29.9 261 65-329 1-263 (354)
2 1zbt_A RF-1, peptide chain rel 100.0 3.7E-87 1.3E-91 652.4 27.6 263 67-329 17-281 (371)
3 1gqe_A Release factor 2, RF2; 100.0 2.8E-85 9.7E-90 638.9 31.4 257 68-329 26-285 (365)
4 2b3t_B RF-1, peptide chain rel 100.0 1.5E-86 5.3E-91 646.3 15.8 261 65-329 5-268 (360)
5 2ihr_1 Peptide chain release f 100.0 3.7E-82 1.2E-86 616.6 16.3 252 68-329 18-273 (365)
6 1rq0_A RF-1, peptide chain rel 100.0 1.4E-80 4.9E-85 600.6 23.4 243 73-329 2-244 (342)
7 2rsm_A Probable peptide chain 100.0 1.2E-36 4E-41 253.0 5.0 83 244-329 11-94 (115)
8 1j26_A Immature colon carcinom 99.9 2.1E-23 7.2E-28 173.7 6.6 57 273-329 12-93 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 2.8E-23 9.5E-28 171.9 5.6 55 275-329 7-85 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.8 1.3E-21 4.3E-26 168.7 3.4 55 275-329 7-85 (140)
11 2lw1_A ABC transporter ATP-bin 96.0 0.046 1.6E-06 42.8 9.3 46 62-107 24-72 (89)
12 3err_A Fusion protein of micro 83.2 5.8 0.0002 40.4 10.3 64 81-154 143-206 (536)
13 3lay_A Zinc resistance-associa 71.3 15 0.00051 32.1 8.1 38 70-107 92-129 (175)
14 1gqe_A Release factor 2, RF2; 69.1 43 0.0015 32.6 11.5 16 67-82 9-24 (365)
15 4fla_A Regulation of nuclear P 63.3 70 0.0024 27.2 11.8 72 57-129 23-107 (152)
16 3ghg_A Fibrinogen alpha chain; 62.6 14 0.00049 37.7 6.9 15 66-80 63-77 (562)
17 1xaw_A Occludin; coiled-coil, 61.5 42 0.0014 28.5 8.6 42 64-105 63-104 (140)
18 2rbd_A BH2358 protein; putativ 58.8 68 0.0023 26.9 9.7 59 105-164 18-76 (171)
19 3na7_A HP0958; flagellar bioge 57.0 1.1E+02 0.0038 27.5 11.9 22 191-212 175-197 (256)
20 2dq0_A Seryl-tRNA synthetase; 56.1 1.5E+02 0.0052 29.2 13.1 70 90-162 30-103 (455)
21 3oja_B Anopheles plasmodium-re 55.1 1.4E+02 0.0047 29.4 12.7 20 136-155 559-578 (597)
22 1m1j_B Fibrinogen beta chain; 54.5 1.5E+02 0.0051 29.7 12.7 98 57-160 87-193 (464)
23 3na7_A HP0958; flagellar bioge 52.5 44 0.0015 30.2 7.9 18 89-106 88-105 (256)
24 3viq_B Mating-type switching p 51.2 32 0.0011 26.9 5.7 43 65-107 13-57 (85)
25 2dfs_A Myosin-5A; myosin-V, in 50.7 74 0.0025 35.0 10.6 16 65-80 926-941 (1080)
26 1naf_A ADP-ribosylation factor 50.3 1.2E+02 0.0041 25.9 11.0 113 75-203 18-144 (158)
27 2dq3_A Seryl-tRNA synthetase; 50.2 1.9E+02 0.0064 28.1 13.7 26 137-162 77-102 (425)
28 2a26_A Calcyclin-binding prote 49.1 66 0.0022 22.5 7.1 40 115-155 8-47 (50)
29 4etr_A Putative uncharacterize 48.2 1.2E+02 0.0039 25.1 9.6 99 102-202 8-120 (153)
30 1ses_A Seryl-tRNA synthetase; 46.5 1.9E+02 0.0064 28.1 11.9 24 139-162 75-98 (421)
31 4ev6_A Magnesium transport pro 46.5 1.5E+02 0.0051 27.5 10.8 24 63-86 167-190 (339)
32 2iub_A CORA, divalent cation t 44.3 1.4E+02 0.0048 28.0 10.4 23 64-86 192-214 (363)
33 3qne_A Seryl-tRNA synthetase, 43.1 2.6E+02 0.0088 28.0 12.4 25 138-162 81-105 (485)
34 1gax_A Valrs, valyl-tRNA synth 42.4 33 0.0011 36.7 6.2 59 59-117 799-858 (862)
35 1oxz_A ADP-ribosylation factor 41.4 1.8E+02 0.0062 25.4 11.1 119 75-208 34-165 (186)
36 3twe_A Alpha4H; unknown functi 40.1 43 0.0015 20.3 3.8 21 139-159 5-25 (27)
37 3uun_A Dystrophin; triple heli 39.2 1.2E+02 0.0041 22.7 12.1 87 66-155 8-98 (119)
38 2dfs_A Myosin-5A; myosin-V, in 36.3 2.9E+02 0.0098 30.3 12.4 16 140-155 1028-1043(1080)
39 4egw_A Magnesium transport pro 33.0 2.6E+02 0.009 24.8 11.1 25 62-86 166-190 (280)
40 3oa7_A Head morphogenesis prot 32.3 2.5E+02 0.0085 25.1 9.1 45 75-119 10-55 (206)
41 1wle_A Seryl-tRNA synthetase; 31.3 3.8E+02 0.013 26.8 11.5 25 138-162 126-150 (501)
42 3tuf_A Stage III sporulation p 31.2 2.8E+02 0.0096 24.6 9.6 50 58-107 82-131 (197)
43 4dnd_A Syntaxin-10, SYN10; str 30.3 2.3E+02 0.0078 23.3 9.4 71 67-146 38-109 (130)
44 2bbh_A Divalent cation transpo 28.4 2.5E+02 0.0086 24.6 8.8 48 63-110 182-231 (269)
45 1deq_A Fibrinogen (alpha chain 28.0 3E+02 0.01 27.0 9.6 16 65-80 65-80 (390)
46 3okq_A BUD site selection prot 27.9 2.8E+02 0.0094 23.5 13.8 51 67-117 28-80 (141)
47 3lay_A Zinc resistance-associa 26.9 3.1E+02 0.01 23.7 11.3 42 121-162 99-140 (175)
48 3lss_A Seryl-tRNA synthetase; 26.9 4.3E+02 0.015 26.4 10.9 26 137-162 113-138 (484)
49 2fxo_A Myosin heavy chain, car 26.8 2.5E+02 0.0086 22.6 10.0 19 139-157 101-119 (129)
50 2c2j_A DNA-binding stress resp 26.4 2.9E+02 0.0098 24.3 8.7 43 114-158 145-187 (211)
51 1ysm_A Calcyclin-binding prote 26.2 1.6E+02 0.0056 22.2 6.0 40 114-154 6-45 (77)
52 2gyq_A YCFI, putative structur 25.6 3.1E+02 0.011 23.4 8.7 54 107-161 18-72 (173)
53 3ghg_A Fibrinogen alpha chain; 24.8 2.9E+02 0.0098 28.3 9.1 13 72-84 62-74 (562)
54 3t98_B Nucleoporin NUP58/NUP45 24.7 2.5E+02 0.0085 21.9 8.1 25 61-85 13-37 (93)
55 1ugo_A BCL2-associated athanog 24.7 80 0.0028 25.2 4.2 74 67-156 18-91 (99)
56 1o3x_A ADP-ribosylation factor 24.2 1.1E+02 0.0037 25.6 5.2 79 109-202 49-134 (140)
57 1s94_A S-syntaxin; three helix 24.2 2.7E+02 0.0093 23.3 7.9 12 64-75 6-17 (180)
58 2ke4_A CDC42-interacting prote 24.2 2.3E+02 0.0078 22.3 6.8 15 67-81 15-29 (98)
59 1uk5_A BAG-family molecular ch 23.6 1.2E+02 0.004 24.7 5.0 75 67-157 30-104 (111)
60 1zbt_A RF-1, peptide chain rel 23.6 2.2E+02 0.0076 27.6 7.9 22 64-86 21-42 (371)
61 3sja_C Golgi to ER traffic pro 23.4 2.3E+02 0.0077 20.9 7.1 48 67-115 6-53 (65)
62 2ko1_A CTR148A, GTP pyrophosph 23.4 2E+02 0.0068 20.3 6.9 57 198-256 23-85 (88)
63 3qne_A Seryl-tRNA synthetase, 22.8 1.3E+02 0.0046 30.1 6.4 44 183-226 309-352 (485)
64 2jee_A YIIU; FTSZ, septum, coi 22.7 2.6E+02 0.009 21.4 7.0 20 140-159 53-72 (81)
65 3ibp_A Chromosome partition pr 22.5 96 0.0033 29.4 4.9 159 94-257 27-219 (302)
66 1ud0_A HSC70, 70 kDa heat-shoc 22.5 2.6E+02 0.009 21.4 7.5 31 75-105 12-46 (113)
67 3uul_A Utrophin; spectrin repe 22.0 2.5E+02 0.0085 20.9 15.0 87 66-155 8-98 (118)
68 3pdy_A Plectin; cytoskeleton, 21.2 3.8E+02 0.013 22.7 12.2 48 65-112 10-59 (210)
69 2p32_A Heat shock 70 kDa prote 21.2 3E+02 0.01 21.5 8.2 15 72-86 23-37 (120)
70 1u5p_A Spectrin alpha chain, b 21.0 3.6E+02 0.012 22.3 14.5 47 66-112 9-57 (216)
71 1m62_A BAG-family molecular ch 20.7 1.9E+02 0.0064 22.4 5.5 25 132-156 60-84 (87)
72 2gs4_A Protein YCIF; stress pr 20.6 3.9E+02 0.013 22.6 8.7 53 107-160 11-64 (166)
73 3etw_A Adhesin A; antiparallel 20.5 3.5E+02 0.012 22.1 12.8 17 66-82 8-24 (119)
74 1zme_C Proline utilization tra 20.2 94 0.0032 21.7 3.5 29 57-85 41-69 (70)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=7e-87 Score=647.57 Aligned_cols=261 Identities=42% Similarity=0.711 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~e 142 (330)
|.+|++.+.+|+++|+.++++|+| |++++++++||++.|+++++.|++|....+|+.++.+|+. |+||+++|++
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~ 76 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA 76 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 357999999999999999999998 9999999999999999999999999999999999999984 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 020135 143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222 (330)
Q Consensus 143 El~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k 222 (330)
|+..++++++.++.+|...|||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||
T Consensus 77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 156 (354)
T 3d5a_X 77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS 156 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccC
Q 020135 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN 302 (330)
Q Consensus 223 ~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~ 302 (330)
+|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+
T Consensus 157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~ 236 (354)
T 3d5a_X 157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD 236 (354)
T ss_dssp EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 303 SAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 303 saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|||||||+||||+|+||++|||++||+
T Consensus 237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~ 263 (354)
T 3d5a_X 237 SAVRVVHLPTGIMVTCQDSRSQIKNRE 263 (354)
T ss_dssp CEEEEEETTTTEEEEECCSSCHHHHHH
T ss_pred ceEEEEEcCCeEEEEECCCCCHHHHHH
Confidence 999999999999999999999999996
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=3.7e-87 Score=652.37 Aligned_cols=263 Identities=38% Similarity=0.689 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL 144 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl 144 (330)
.+++.+.+|+++|++++++|+| |++++++++||++.|+++++.|++|....+|+.++.+|+.+.+.|+||+++|++|+
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~ 96 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEEL 96 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 5889999999999999999998 99999999999999999999999999999999999999975235899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEE
Q 020135 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224 (330)
Q Consensus 145 ~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a 224 (330)
..++++++.++.+|...|||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||+|
T Consensus 97 ~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv 176 (371)
T 1zbt_A 97 KNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEV 176 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccCce
Q 020135 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (330)
Q Consensus 225 ~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~sa 304 (330)
++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+||
T Consensus 177 ~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~Sa 256 (371)
T 1zbt_A 177 VAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATA 256 (371)
T ss_dssp EEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC---------CCCCE
T ss_pred EEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEecCccChhhhhc
Q 020135 305 VRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 305 VritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|||||+||||+|+||++|||++||+
T Consensus 257 VrlthlPtGivV~~q~eRSQ~~Nr~ 281 (371)
T 1zbt_A 257 VRIIHLPTNIKVEMQEERTQQKNRD 281 (371)
T ss_dssp EEEEETTTTEEEEECSSSSHHHHHH
T ss_pred EEEEECCCeEEEEECCcCCHHHHHH
Confidence 9999999999999999999999996
No 3
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=2.8e-85 Score=638.86 Aligned_cols=257 Identities=34% Similarity=0.569 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~ 145 (330)
+++.+.+|+++|+.++++|+| |++++++++||++.|+++++.|++|+...+|+.++.+|+.+ +.|+||+++|++|+.
T Consensus 26 ~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~-e~D~e~~~~a~~e~~ 104 (365)
T 1gqe_A 26 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELD 104 (365)
T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHH
Confidence 567889999999999999999 99999999999999999999999999999999999999976 469999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEE
Q 020135 146 LAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEAS 225 (330)
Q Consensus 146 ~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~ 225 (330)
.++++++.++ ..+||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||+|+
T Consensus 105 ~l~~~l~~le----~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~ 180 (365)
T 1gqe_A 105 ALEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT 180 (365)
T ss_dssp HHHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred HHHHHHHHHH----HHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEE
Confidence 9999999988 567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCC-ccccccCCCCeEEEEeeecCCCCCCCcccCce
Q 020135 226 AAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSA 304 (330)
Q Consensus 226 ~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~-~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~sa 304 (330)
+.|+|++||++||+|+|||||||||||+++||+|||||+|+|+|+.+ ++++.|+++||+|+|+|||||||||||||+||
T Consensus 181 ~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~sa 260 (365)
T 1gqe_A 181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 260 (365)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred EEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCccce
Confidence 99999999999999999999999999999999999999999999997 58999999999999999999999999999999
Q ss_pred EEEEEeCCeeEEEecCccChhhhhc
Q 020135 305 VRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 305 VritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
|||||+||||+|+||++||||+||+
T Consensus 261 Vrl~HiPtgivv~~q~~RSQ~~Nr~ 285 (365)
T 1gqe_A 261 VRITHIPTGIVTQCQNDRSQHKNKD 285 (365)
T ss_dssp EEEEETTTCCEEEECSSSCHHHHHH
T ss_pred EEEEECCCeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999996
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=1.5e-86 Score=646.34 Aligned_cols=261 Identities=44% Similarity=0.760 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE 142 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~e 142 (330)
|.++++.+.+|+++|+.++++|+| |++++++++||++.|+++++.|++|....+++.++.+|+ + |+||+++|++
T Consensus 5 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e---D~e~~~~a~~ 80 (360)
T 2b3t_B 5 IVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D---DPEMREMAQD 80 (360)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CHHHHHHHHH
Confidence 567899999999999999999998 999999999999999999999999999999999999998 3 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 020135 143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222 (330)
Q Consensus 143 El~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k 222 (330)
|+..++++++.++.+|...|||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||
T Consensus 81 e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 160 (360)
T 2b3t_B 81 ELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK 160 (360)
T ss_dssp --------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCce
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccc-cccCCCCeEEEEeeecCCCCCCCccc
Q 020135 223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVD-VRLRNEDLRIDTYRSGGSGGQHANTT 301 (330)
Q Consensus 223 ~a~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~-~~i~~~dl~i~~~RssG~GGQ~VNkt 301 (330)
+|++.|+|++||++||+|+|||||||||+|+++||+|||||+|+|+|+.++++ +.|+++||+|+|+|||||||||||||
T Consensus 161 ~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt 240 (360)
T 2b3t_B 161 EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTT 240 (360)
T ss_dssp EEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCS
T ss_pred EEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999888 89999999999999999999999999
Q ss_pred CceEEEEEeCCeeEEEecCccChhhhhc
Q 020135 302 NSAVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 302 ~saVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
+|||||||+||||+|+||++|||++||+
T Consensus 241 ~saVrl~hlPtGivv~~q~~RSQ~~Nr~ 268 (360)
T 2b3t_B 241 DSAIRITHLPTGIVVECQDERSQHKNKA 268 (360)
T ss_dssp SEEEEEEETTTCCEEEEEESSCHHHHHH
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999999996
No 5
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=3.7e-82 Score=616.57 Aligned_cols=252 Identities=35% Similarity=0.528 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCHHHHHHHHHHH
Q 020135 68 RVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS-LIYECSEDKDMLDMATEEL 144 (330)
Q Consensus 68 rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~e-Ll~e~~eD~El~e~a~eEl 144 (330)
+++.+.+|+++|++++++|+| |+++++++++|++.|+++++.|++|....+|++++.+ |+.+ +| ++|.+|+
T Consensus 18 ~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~e--ed----~~a~~e~ 91 (365)
T 2ihr_1 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAE--ER----EALKPEL 91 (365)
T ss_dssp SHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCT--TG----GGTGGGT
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cH----HHHHHHH
Confidence 578899999999999999998 9999999999999999999999999999999999999 9864 23 7899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEE
Q 020135 145 CLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEA 224 (330)
Q Consensus 145 ~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a 224 (330)
..+++++++++ ..+||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||+|
T Consensus 92 ~~l~~~~~~le----~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~ 167 (365)
T 2ihr_1 92 EEAAKKLDELY----HQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYA 167 (365)
T ss_dssp HHHHHHHHHHH----HHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEE
T ss_pred HHHHHHHHHHH----HHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEE
Confidence 99999999988 55778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCC-ccccccCCCCeEEEEeeecCCCCCCCcccCc
Q 020135 225 SAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD-EVDVRLRNEDLRIDTYRSGGSGGQHANTTNS 303 (330)
Q Consensus 225 ~~~i~G~~ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~-~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~s 303 (330)
++.|+|++||++||+|+|||||||||||+++||+|||||+|+|+|+.+ ++++.|+++||+|+|+|||||||||||||+|
T Consensus 168 ~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~s 247 (365)
T 2ihr_1 168 QILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDS 247 (365)
T ss_dssp EEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCS
T ss_pred EEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecccce
Confidence 999999999999999999999999999999999999999999999986 4889999999999999999999999999999
Q ss_pred eEEEEEeCCeeEEEecCccChhhhhc
Q 020135 304 AVRVTHIPTGMTISIQDERSQHMVKD 329 (330)
Q Consensus 304 aVritH~PTGi~v~~~~eRSQ~~Nk~ 329 (330)
||||||+||||+|+||++|||++||+
T Consensus 248 aVrl~h~Ptgivv~~q~~RSQ~~Nr~ 273 (365)
T 2ihr_1 248 AVRVVHLPTGITVTCQTTRSQIKNKE 273 (365)
T ss_dssp EEEEEETTTTEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCeEEEEECCCCCHHHHHH
Confidence 99999999999999999999999996
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=1.4e-80 Score=600.65 Aligned_cols=243 Identities=42% Similarity=0.722 Sum_probs=227.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 020135 73 ERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152 (330)
Q Consensus 73 ~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~ 152 (330)
.+|+++|++++++|+||++++++++||++.|+++++.|++|. +++++.+|+.+ +.|+ ++|+..++++++
T Consensus 2 ~~r~~el~~~~~~p~~d~~~~~~~~ke~~~l~~~v~~~~~~~----~~~~~~~l~~e-~~D~------~~e~~~l~~~l~ 70 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLRE-EGEN------ELEIEKYEKELD 70 (342)
T ss_dssp TTTTTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTT-TTTC------CSCHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHh-cCCH------HHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999 77888888864 3354 788999999999
Q ss_pred HHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEEEEeccc
Q 020135 153 RLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVG 232 (330)
Q Consensus 153 ~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~~ 232 (330)
.++.+|..+|+| +|.+||||||+||+||+||++||+|||+||.+||+++||++++++..+++.+|||+|++.|+|++
T Consensus 71 ~le~~l~~lL~p---~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ 147 (342)
T 1rq0_A 71 QLYQELLFLLSP---EASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKN 147 (342)
T ss_dssp HHHHHHHHHHSC---SSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTT
T ss_pred HHHHHHHHhcCc---cccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcC
Confidence 999999988875 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeEEeecCCCCCCCceEeeeeEEEEecCCCccccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCC
Q 020135 233 VYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPT 312 (330)
Q Consensus 233 ay~~lk~E~GvHrv~Rvp~~~~~gR~hts~a~V~v~P~~~~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PT 312 (330)
||++||+|+|||||||||+|+++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+|||||||+||
T Consensus 148 ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPt 227 (342)
T 1rq0_A 148 AYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPT 227 (342)
T ss_dssp HHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTT
T ss_pred HHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcccccccceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCccChhhhhc
Q 020135 313 GMTISIQDERSQHMVKD 329 (330)
Q Consensus 313 Gi~v~~~~eRSQ~~Nk~ 329 (330)
||+|+||++|||++||+
T Consensus 228 Givv~~q~~RSQ~~Nr~ 244 (342)
T 1rq0_A 228 GIVVSCQNERSQYQNKQ 244 (342)
T ss_dssp CCEEEEEESSCHHHHHH
T ss_pred eEEEEECCCCCHHHHHH
Confidence 99999999999999996
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=253.04 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=80.0
Q ss_pred eEEeecCCCCCCCceEeeeeEEEEecCCCc-cccccCCCCeEEEEeeecCCCCCCCcccCceEEEEEeCCeeEEEecCcc
Q 020135 244 HRVQRVPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDER 322 (330)
Q Consensus 244 Hrv~Rvp~~~~~gR~hts~a~V~v~P~~~~-~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH~PTGi~v~~~~eR 322 (330)
|||||+|.|+++| ||+++|+|+|+.|+ ..+.|+++||+|+|+|||||||||||||+|||||+|+||||+|+||++|
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~R 87 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTR 87 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCC
Confidence 8999999999999 99999999999985 4589999999999999999999999999999999999999999999999
Q ss_pred Chhhhhc
Q 020135 323 SQHMVKD 329 (330)
Q Consensus 323 SQ~~Nk~ 329 (330)
||++||+
T Consensus 88 SQ~~Nr~ 94 (115)
T 2rsm_A 88 SVDQNRK 94 (115)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9999996
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.88 E-value=2.1e-23 Score=173.67 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=54.3
Q ss_pred ccccccCCCCeEEEEeeecCCCCCCCcccCceEEEE-EeCCe------------------------eEEEecCccChhhh
Q 020135 273 EVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT-HIPTG------------------------MTISIQDERSQHMV 327 (330)
Q Consensus 273 ~~~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVrit-H~PTG------------------------i~v~~~~eRSQ~~N 327 (330)
.+++.|+++||+++|+|||||||||||||+|||||+ |+||| |+|+||++|||++|
T Consensus 12 ~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 91 (112)
T 1j26_A 12 QASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRN 91 (112)
T ss_dssp SSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHH
T ss_pred ceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHH
Confidence 457789999999999999999999999999999997 99998 99999999999999
Q ss_pred hc
Q 020135 328 KD 329 (330)
Q Consensus 328 k~ 329 (330)
|+
T Consensus 92 r~ 93 (112)
T 1j26_A 92 LA 93 (112)
T ss_dssp HH
T ss_pred HH
Confidence 96
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.88 E-value=2.8e-23 Score=171.93 Aligned_cols=55 Identities=27% Similarity=0.570 Sum_probs=52.8
Q ss_pred ccccCCCCeEEEEeeecCCCCCCCcccCceEEEEE------eC-----------------Ce-eEEEecCccChhhhhc
Q 020135 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTH------IP-----------------TG-MTISIQDERSQHMVKD 329 (330)
Q Consensus 275 ~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVritH------~P-----------------TG-i~v~~~~eRSQ~~Nk~ 329 (330)
++.|+++||+++|+|||||||||||||+|||||+| +| || |+|+||++|||++||+
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~ 85 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRA 85 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHH
Confidence 57789999999999999999999999999999999 99 98 9999999999999996
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.83 E-value=1.3e-21 Score=168.68 Aligned_cols=55 Identities=33% Similarity=0.605 Sum_probs=52.4
Q ss_pred ccccCCCCeEEEEeeecCCCCCCCcccCceEEEE------EeCC------------------eeEEEecCccChhhhhc
Q 020135 275 DVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT------HIPT------------------GMTISIQDERSQHMVKD 329 (330)
Q Consensus 275 ~~~i~~~dl~i~~~RssG~GGQ~VNkt~saVrit------H~PT------------------Gi~v~~~~eRSQ~~Nk~ 329 (330)
++.|+++||+|+|+|||||||||||||+|||+|+ |+|| ||+|+||++|||++||+
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~ 85 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNRE 85 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHH
Confidence 5788999999999999999999999999999999 7998 59999999999999986
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=95.99 E-value=0.046 Score=42.82 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhHHHH
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQPEA---SPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP~~---D~~~~~kl~KE~~~L~~iv 107 (330)
+..+..+++.++.++++|+..|+||+| |+.+...+.+++..+..-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eL 72 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQEL 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999997 8888888888888777644
No 12
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=83.21 E-value=5.8 Score=40.35 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=49.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 020135 81 NLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154 (330)
Q Consensus 81 ~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~l 154 (330)
.-+.+|+|+++.+.+.++-.+.|-.+|.+...|....++...+++-+. .+++++..+++++..+
T Consensus 143 ~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk----------~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 143 NYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ----------KLEDDAKDNQQKLEAL 206 (536)
T ss_dssp HTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHH----------HHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999888888777777665543 2455566666666554
No 13
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=71.34 E-value=15 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHH
Q 020135 70 LAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 70 e~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~iv 107 (330)
+++.....+|..++..|++|++++.++.+|+.+|+.-.
T Consensus 92 ~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 92 QQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999999988888743
No 14
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=69.12 E-value=43 Score=32.60 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENL 82 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~ 82 (330)
.+++.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~ 24 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGY 24 (365)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555565555543
No 15
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=63.29 E-value=70 Score=27.20 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHH
Q 020135 57 LSNDLIKIMEQRVLA-------IERRSACLENLVNQPEA-----SPAEYSKANKELRKLRDSMHLIS-ELRTKQKEIDGL 123 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~-------l~~r~~eLe~~lsdP~~-----D~~~~~kl~KE~~~L~~ive~~~-~l~~~~edl~~l 123 (330)
.+++||+.+. .|+. +.+|++.|=..++||.+ |...+.++.++..+-...++.|. .+....++-..+
T Consensus 23 ~~~elik~L~-~le~sassDa~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L 101 (152)
T 4fla_A 23 LTEELIKALQ-DLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQL 101 (152)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HhhccccchHHHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777887653 3331 23344444444555554 77888999998777766665554 455666777777
Q ss_pred HHHHhh
Q 020135 124 KSLIYE 129 (330)
Q Consensus 124 ~eLl~e 129 (330)
.+++.+
T Consensus 102 ~~~L~~ 107 (152)
T 4fla_A 102 ARMLVE 107 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777743
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.58 E-value=14 Score=37.68 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 020135 66 EQRVLAIERRSACLE 80 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe 80 (330)
.++|++|+.++++++
T Consensus 63 tkrINELKnqLEdls 77 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555553
No 17
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=61.49 E-value=42 Score=28.49 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHH
Q 020135 64 IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRD 105 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ 105 (330)
.+..+++.+.++|.+|+.+|..-.-.+.+++.+..|+++++.
T Consensus 63 ~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 63 SLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 356788888889999998887622245666666555555543
No 18
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=58.83 E-value=68 Score=26.90 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 105 DSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLP 164 (330)
Q Consensus 105 ~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp 164 (330)
++.+.|..|.....-+..+.-+++- ..|+|++.+++.-++..+.+++.+++.+...=+|
T Consensus 18 E~~~lW~~l~~~~~~i~~~~~f~~~-~~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p 76 (171)
T 2rbd_A 18 EVFSTWTYLSTNNGLINGYRSFINH-TGDEDLKNLIDEAIQAMQDENHQLEELLRSNGVG 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4455666667666666666666654 5799999999999999999999999888665444
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.03 E-value=1.1e+02 Score=27.46 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHH-HcCCeEEEEe
Q 020135 191 VDVFKMYERYSQ-KKGWKFEVVG 212 (330)
Q Consensus 191 ~~L~~mY~~~a~-~~g~~~~~i~ 212 (330)
..|+..|.+.-. ..|.-+-.|.
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEECB
T ss_pred HHHHHHHHHHHHhCCCceEEEee
Confidence 478899998886 4676665553
No 20
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=56.15 E-value=1.5e+02 Score=29.16 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 90 PAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKS-LIYECSEDKDM---LDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 90 ~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~e-Ll~e~~eD~El---~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
.++...+-++...+..-++.++.-+ +.+..-.. +....++-.++ ...+.+++..+++++.++++++...+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~---n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHER---NKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444443333 33322211 22221122333 23456788888888888888886654
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.06 E-value=1.4e+02 Score=29.35 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020135 136 MLDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 136 l~e~a~eEl~~l~~~l~~le 155 (330)
...++++|...+..++.+++
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544
No 22
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.46 E-value=1.5e+02 Score=29.67 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=44.7
Q ss_pred CChHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH----HhhHHHHHHHHHHHHHHHHHHHHH-HHH
Q 020135 57 LSNDLIKI---MEQRVLAIERRSACLENLVNQPEASPAEYS-KANKEL----RKLRDSMHLISELRTKQKEIDGLK-SLI 127 (330)
Q Consensus 57 ~~~~l~~~---m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~-kl~KE~----~~L~~ive~~~~l~~~~edl~~l~-eLl 127 (330)
+.+.|++. +...|+.|+.++++|++..+. ..++. .|...+ ..+....+..+++...++...... +.+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~----~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTT----MYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 344566666666666554432 12221 111122 223333334444444444443322 222
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 128 YECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 128 ~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
.. .-+.-...++..++.+..+|..|+..+..
T Consensus 163 ~~--~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 163 DN--NIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233344556667777777777766643
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.48 E-value=44 Score=30.15 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHhhHHH
Q 020135 89 SPAEYSKANKELRKLRDS 106 (330)
Q Consensus 89 D~~~~~kl~KE~~~L~~i 106 (330)
+++++..+.+|+..++.-
T Consensus 88 ~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 88 SERELRSLNIEEDIAKER 105 (256)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 555555565555555443
No 24
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=51.21 E-value=32 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~iv 107 (330)
+......+++.+.+++..+.+|+- -.+++.++..+|++++++.
T Consensus 13 L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~g 57 (85)
T 3viq_B 13 LEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIA 57 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444455555555555555431 1245555556666665554
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.67 E-value=74 Score=34.98 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLE 80 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe 80 (330)
|+.++..++.|+++.+
T Consensus 926 LE~kl~eLq~rL~~~e 941 (1080)
T 2dfs_A 926 LENKIMQLQRKIDEQN 941 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 26
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=50.29 E-value=1.2e+02 Score=25.94 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhc------CC-CHHHHHHH
Q 020135 75 RSACLENLVNQ--PEASPAEYSKANKELRKL-----RDSMHLISELRTKQKEIDGLKSLIYEC------SE-DKDMLDMA 140 (330)
Q Consensus 75 r~~eLe~~lsd--P~~D~~~~~kl~KE~~~L-----~~ive~~~~l~~~~edl~~l~eLl~e~------~e-D~El~e~a 140 (330)
+-+.|.+++.. |. |..+|.++.|....- ..+.....++......+..|.||+..- .. |.|+..++
T Consensus 18 ks~~L~~Lirs~~Pe-DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL 96 (158)
T 1naf_A 18 KSKMLARLLKSSHPE-DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKEL 96 (158)
T ss_dssp HHHHHHHHHSSCSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHH
T ss_pred HHHHHHHHHhcCChh-hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHH
Confidence 45566666654 43 778888888876643 223333334444444556667777531 11 55777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHH
Q 020135 141 TEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQK 203 (330)
Q Consensus 141 ~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~ 203 (330)
.+.++..+..+-++-. . ..|+..++ .-...+.+=...++..|.++...
T Consensus 97 ~~~Ck~~qp~i~~Li~----e-----~~ddee~L------~elL~~ND~Ln~vl~kY~~~~~g 144 (158)
T 1naf_A 97 YQRCERMRPTLFRLAS----D-----TEDNDEAL------AEILQANDNLTQVINLYKQLVRG 144 (158)
T ss_dssp HHHHHTHHHHHHHHHH----H-----CCSCHHHH------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH----H-----ccCCHHHH------HHHHHhhHHHHHHHHHHHHHhcC
Confidence 7777777777766542 1 11221121 11344455566777778777553
No 27
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.21 E-value=1.9e+02 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 137 LDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
...+.+++..+++++.++++++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 77 VKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999988888886654
No 28
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=49.07 E-value=66 Score=22.54 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020135 115 TKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQ 155 (330)
Q Consensus 115 ~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le 155 (330)
+...|+++++.|+.. ..-+-.++.+..|+..++.++..++
T Consensus 8 eL~~DL~El~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 8 ELQKDLEEVKVLLEK-ATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666654 3568888899999999988887654
No 29
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=48.16 E-value=1.2e+02 Score=25.09 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-------ccce
Q 020135 102 KLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADE-------RDCI 174 (330)
Q Consensus 102 ~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~-------~~~i 174 (330)
....+++.++++.....|-..-.+-+.+..+|++++.+..+-...-..-+.+|...+... -..|.+. ...|
T Consensus 8 ~~~~~i~~Ln~Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~l--Gg~p~~~~s~~g~~hr~~ 85 (153)
T 4etr_A 8 NLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLEL--GGKPKDSTSFAGDLHRRW 85 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCC--------------
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCcHHHHHHHHH
Confidence 346777777777777777776655554446789999988888888888888888766553 2223322 3467
Q ss_pred EEEEcCCCc--hHH----HHHH-HHHHHHHHHHHH
Q 020135 175 LEVRAGTGG--EEA----SLFA-VDVFKMYERYSQ 202 (330)
Q Consensus 175 leI~aG~GG--~Ea----~~~a-~~L~~mY~~~a~ 202 (330)
+.|++--+| +++ +... ....+.|.+..+
T Consensus 86 ~~lks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~ 120 (153)
T 4etr_A 86 VDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALE 120 (153)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766433 222 2222 245667766655
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.51 E-value=1.9e+02 Score=28.14 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 139 MATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
.+.+++..+++++.++++++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888887776554
No 31
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.50 E-value=1.5e+02 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 63 KIMEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 63 ~~m~~rLe~l~~r~~eLe~~lsdP 86 (330)
.....-++.+.++.+++|..+-..
T Consensus 167 d~~~~~l~~l~~~i~~lE~~l~~~ 190 (339)
T 4ev6_A 167 RSYSRILMNLEDELEELEDKLLAG 190 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334556778888999999877543
No 32
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=44.30 E-value=1.4e+02 Score=27.98 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 020135 64 IMEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP 86 (330)
....-++.+.++.++||..+.++
T Consensus 192 ~y~~~l~~l~~~id~lE~~v~~~ 214 (363)
T 2iub_A 192 DYFVLLEKIDDEIDVLEEEVLER 214 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456788999999999988754
No 33
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.10 E-value=2.6e+02 Score=28.03 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..+.+++..+++++.++++++...+
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888885544
No 34
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=42.44 E-value=33 Score=36.70 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020135 59 NDLIKIMEQRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQ 117 (330)
Q Consensus 59 ~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~ 117 (330)
+.....+.+.++.+++.++.++.++++|+| +..-..-+.++..+|....+.+..+++.+
T Consensus 799 ~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (862)
T 1gax_A 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 858 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999998 22222235556666666555555554443
No 35
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=41.43 E-value=1.8e+02 Score=25.44 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHhhc------CC-CHHHHHHHH
Q 020135 75 RSACLENLVNQPEA-SPAEYSKANKELRK-----LRDSMHLISELRTKQKEIDGLKSLIYEC------SE-DKDMLDMAT 141 (330)
Q Consensus 75 r~~eLe~~lsdP~~-D~~~~~kl~KE~~~-----L~~ive~~~~l~~~~edl~~l~eLl~e~------~e-D~El~e~a~ 141 (330)
+-+.|.+++..-.- |-.+|.+++|.+.. ...+.....++......++.|.||+..- .. |.|+..++.
T Consensus 34 kSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~ 113 (186)
T 1oxz_A 34 KSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELY 113 (186)
T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHH
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHH
Confidence 35556666654221 55677777766543 2333334444444555566677777531 12 567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCCCchHHHHHHHHHHHHHHHHHHHcCCeE
Q 020135 142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKF 208 (330)
Q Consensus 142 eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~ 208 (330)
+.++.++..+-++-. . ..|+..++ .-..++.+=...++..|.++....-...
T Consensus 114 ~~Ck~~qp~i~~Li~----e-----~~ddee~L------~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 165 (186)
T 1oxz_A 114 QRCERMRPTLFRLAS----D-----TEDNDEAL------AEILQANDNLTQVINLYKQLVRGEEVNG 165 (186)
T ss_dssp HHHHHHHHHHHHHHH----H-----CCSCHHHH------HHHHHHHHHHHHHHHHHTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHH----H-----ccCCHHHH------HHHHHhhHHHHHHHHHHHHHhcCCCCCc
Confidence 777777777766542 1 11221122 1134455556778888888877654333
No 36
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.11 E-value=43 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020135 139 MATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~l~ 159 (330)
++..|++.+++.+.++.++|.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888887654
No 37
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=39.17 E-value=1.2e+02 Score=22.69 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENLVNQ--P-EASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMAT 141 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~lsd--P-~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l-~eLl~e~~eD~El~e~a~ 141 (330)
...++.+...+.+.|..++. | ..|+.......+++..+..-+.....- .+.+... ..|+.....+++-...+.
T Consensus 8 ~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~---v~~~~~~g~~L~~~~~~~~~~~~~i~ 84 (119)
T 3uun_A 8 QTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGR---VGNILQLGSKLIGTGKLSEDEETEVQ 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35667777888888776643 3 238888888888888877766555433 3333333 345543333455555555
Q ss_pred HHHHHHHHHHHHHH
Q 020135 142 EELCLAIDEEKRLQ 155 (330)
Q Consensus 142 eEl~~l~~~l~~le 155 (330)
+.+..+...-+.+.
T Consensus 85 ~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 85 EQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.33 E-value=2.9e+02 Score=30.34 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEEKRLQ 155 (330)
Q Consensus 140 a~eEl~~l~~~l~~le 155 (330)
+++|...|+.++++++
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 39
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=32.97 E-value=2.6e+02 Score=24.83 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 020135 62 IKIMEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 62 ~~~m~~rLe~l~~r~~eLe~~lsdP 86 (330)
+.-...-++.+.++.++||..+...
T Consensus 166 vd~y~~~l~~i~~~id~lE~~l~~~ 190 (280)
T 4egw_A 166 TRSYSRILMNLEDELEELEDKLLAG 190 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334456788999999999888654
No 40
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.30 E-value=2.5e+02 Score=25.14 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCCHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 020135 75 RSACLENLVNQPEASPA-EYSKANKELRKLRDSMHLISELRTKQKE 119 (330)
Q Consensus 75 r~~eLe~~lsdP~~D~~-~~~kl~KE~~~L~~ive~~~~l~~~~ed 119 (330)
.++++=..+.||...+. +-..+.+-.+++...+..|.++....+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~ 55 (206)
T 3oa7_A 10 EHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNT 55 (206)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777889998554 4444455567777778777777655444
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.26 E-value=3.8e+02 Score=26.77 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 138 DMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 138 e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..+.+++..+++++.++++++...+
T Consensus 126 ~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 126 REIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888887775554
No 42
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=31.25 E-value=2.8e+02 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHH
Q 020135 58 SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSM 107 (330)
Q Consensus 58 ~~~l~~~m~~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~iv 107 (330)
..+|..+=++|=....+..+.|...+.+++.+.+.-.....++..|....
T Consensus 82 ~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ 131 (197)
T 3tuf_A 82 DDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVE 131 (197)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34565544455555566788888999999988776666666666555543
No 43
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.34 E-value=2.3e+02 Score=23.27 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEA-SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELC 145 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~-D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~ 145 (330)
..+..++..|..-.....++.. +..++..+.+|+ -..+..+...++|++....+++. ++.-+.+-..|+.
T Consensus 38 ~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL------~~~l~sie~dLeDLe~sI~ivE~---np~kF~l~~~Ei~ 108 (130)
T 4dnd_A 38 KAVNTARGLYQRWCELLQESAAVGREELDWTTNEL------RNGLRSIEWDLEDLEETIGIVEA---NPGKFKLPAGDLQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHC---------CHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---CHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh---CHHhcCCCHHHHH
Confidence 3444444444444443433332 222334444442 33556667777777777777643 4543333333443
Q ss_pred H
Q 020135 146 L 146 (330)
Q Consensus 146 ~ 146 (330)
.
T Consensus 109 ~ 109 (130)
T 4dnd_A 109 E 109 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=28.40 E-value=2.5e+02 Score=24.55 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHH
Q 020135 63 KIMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLI 110 (330)
Q Consensus 63 ~~m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~ 110 (330)
.-...-++.+.+++++||..+.++.. ...+...+.+++..|+..+...
T Consensus 182 d~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~ 231 (269)
T 2bbh_A 182 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPL 231 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888889999887654321 2334444444444444444333
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.02 E-value=3e+02 Score=26.97 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLE 80 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe 80 (330)
+..|++.|..+++++.
T Consensus 65 ~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQ 80 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 46
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.92 E-value=2.8e+02 Score=23.47 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQ 117 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~l~~~~ 117 (330)
.|++.++.-++.|-+-...-.+ .+.....+.+++..+..-+..+..|....
T Consensus 28 tkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 28 SKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666666666666544443333 57888888888887777776666665443
No 47
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.94 E-value=3.1e+02 Score=23.68 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 121 ~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
.++..|+..+..|++-.+.+..|+.++..++.....+....+
T Consensus 99 ~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 99 YEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556654456888778888888888888877665555554
No 48
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.86 E-value=4.3e+02 Score=26.38 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 137 LDMATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 137 ~e~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
...+.+++..+++++.++++++...+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888888885554
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.77 E-value=2.5e+02 Score=22.64 Aligned_cols=19 Identities=21% Similarity=-0.045 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020135 139 MATEELCLAIDEEKRLQSL 157 (330)
Q Consensus 139 ~a~eEl~~l~~~l~~le~~ 157 (330)
.+..+-..++.++..+.+.
T Consensus 101 ~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 101 ELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433
No 50
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=26.44 E-value=2.9e+02 Score=24.33 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLL 158 (330)
Q Consensus 114 ~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l 158 (330)
....+.+.++.+++.+ . |....+++.+=+...++.+--|+..|
T Consensus 145 ~~~i~~~re~i~~aee-~-D~~T~dLl~~il~~~EkhiW~L~a~L 187 (211)
T 2c2j_A 145 ETVGQRIHQRVGDVEK-V-DPTTANLLQEVEHIIEKYQWQMRAFL 187 (211)
T ss_dssp HHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhc-c-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555565554 4 88889999888888888888777444
No 51
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=26.24 E-value=1.6e+02 Score=22.24 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 020135 114 RTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRL 154 (330)
Q Consensus 114 ~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~l~~~l~~l 154 (330)
.....|+++++.|+.. ..-+-.+..+..|+..++.++..+
T Consensus 6 eeL~~DLeEl~~Ll~~-AkR~rVk~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 6 EELQKDLEEVKVLLEK-STRKRLRDTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555543 245677888888888888877764
No 52
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=25.64 E-value=3.1e+02 Score=23.37 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020135 107 MHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKS 161 (330)
Q Consensus 107 ve~~~~l~~~~edl~~l-~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~~ 161 (330)
++.++++-...+++..+ ..|+.. .+||++++.++.-+.+.+.+++.|+.-+...
T Consensus 18 ~~~L~Diy~aE~q~~~aL~~~~~~-a~~p~Lk~~l~~H~~eT~~qi~rLe~i~~~l 72 (173)
T 2gyq_A 18 LHGLRDIYYAEQQITKALPKMIEQ-ATNRDLSQGLTSHLEETQKQIERLDQVFKKL 72 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555555544 445554 5689999999999999999999998766554
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.76 E-value=2.9e+02 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhc
Q 020135 72 IERRSACLENLVN 84 (330)
Q Consensus 72 l~~r~~eLe~~ls 84 (330)
+.+++++|-+++.
T Consensus 62 ltkrINELKnqLE 74 (562)
T 3ghg_A 62 FTNRINKLKNSLF 74 (562)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 54
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.72 E-value=2.5e+02 Score=21.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 61 LIKIMEQRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 61 l~~~m~~rLe~l~~r~~eLe~~lsd 85 (330)
++..++++|...+..++++|..+..
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566788999999999999998875
No 55
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=24.67 E-value=80 Score=25.18 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL 146 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~ 146 (330)
.++..+..++.+|+.+... |...+ -.++|..|...+ .+.+-.|-.+ +.+.|.+++..=+..+..
T Consensus 18 ~kI~~I~~ev~~L~~~V~~--f~g~k---~dkey~~L~E~L---------~k~LLkLD~I--eteG~~~iR~~RK~~Vk~ 81 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVG--FSGLS---DDKNYKRLERIL---------TKQLFEIDSV--DTEGKGDIQQARKRAAQE 81 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHT--CCCCT---TSSHHHHHHHHH---------HHHHHHHHHS--CCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCCc---hhHHHHHHHHHH---------HHHHHHHcCc--CcCCcHHHHHHHHHHHHH
Confidence 4788888888888888754 31111 123444443221 1111111111 123467776666666666
Q ss_pred HHHHHHHHHH
Q 020135 147 AIDEEKRLQS 156 (330)
Q Consensus 147 l~~~l~~le~ 156 (330)
++.-++.|+.
T Consensus 82 iQ~~l~~LD~ 91 (99)
T 1ugo_A 82 TERLLKELEQ 91 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777764
No 56
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=24.24 E-value=1.1e+02 Score=25.59 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccceEEEEcCC
Q 020135 109 LISELRTKQKEIDGLKSLIYEC----SE---DKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGT 181 (330)
Q Consensus 109 ~~~~l~~~~edl~~l~eLl~e~----~e---D~El~e~a~eEl~~l~~~l~~le~~l~~~Llp~d~~D~~~~ileI~aG~ 181 (330)
...++......+..|.+|+..- .. |.|+...+...+...+..+-++- . +..|+..++ .
T Consensus 49 ~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li--------~-e~~ddee~l------~ 113 (140)
T 1o3x_A 49 RVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLA--------S-DTEDNDEAL------A 113 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------T-TCTTCHHHH------H
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH--------H-HccCCHHHH------H
Confidence 3334444444556666776531 11 24555655555555555555442 1 112222222 1
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 020135 182 GGEEASLFAVDVFKMYERYSQ 202 (330)
Q Consensus 182 GG~Ea~~~a~~L~~mY~~~a~ 202 (330)
-.....+=...++..|.++..
T Consensus 114 elL~~ND~ln~vl~kY~~~~~ 134 (140)
T 1o3x_A 114 EILQANDNLTQVINLYKQLVR 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhc
Confidence 133444456667777777654
No 57
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.21 E-value=2.7e+02 Score=23.25 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 020135 64 IMEQRVLAIERR 75 (330)
Q Consensus 64 ~m~~rLe~l~~r 75 (330)
-|.+||..|...
T Consensus 6 ~mkDRl~eL~~~ 17 (180)
T 1s94_A 6 RTKDRLAALKAA 17 (180)
T ss_dssp ------------
T ss_pred chhHHHHHHhcc
Confidence 356677766663
No 58
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.18 E-value=2.3e+02 Score=22.26 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLEN 81 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~ 81 (330)
+|...|+.++.+|++
T Consensus 15 qRkkkL~~Ki~el~~ 29 (98)
T 2ke4_A 15 QQRKRLQQQLEERSR 29 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 59
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=23.59 E-value=1.2e+02 Score=24.75 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL 146 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~El~e~a~eEl~~ 146 (330)
.++..+..++++|..++.. |... +-.++|..|.+.+ .+.+-.|-.+ +.+.|.+++..=+..+..
T Consensus 30 ~~I~~I~~eV~~L~~qV~~--f~g~---k~dkey~~L~E~L---------~k~LLkLD~I--eteG~~~vR~aRK~aVk~ 93 (111)
T 1uk5_A 30 LKVEAILEKVQGLEQAVDS--FEGK---KTDKKYLMIEEYL---------TKELLALDSV--DPEGRADVRQARRDGVRK 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CCSC---SSSHHHHHHHHHH---------HHHHHHHHSC--CCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCC---cchHHHHHHHHHH---------HHHHHHHCCc--CcCCcHHHHHHHHHHHHH
Confidence 4788888888888888765 3111 1123344443321 1111111111 223466676666666667
Q ss_pred HHHHHHHHHHH
Q 020135 147 AIDEEKRLQSL 157 (330)
Q Consensus 147 l~~~l~~le~~ 157 (330)
++.-++.|+.+
T Consensus 94 iQ~~l~~LD~k 104 (111)
T 1uk5_A 94 VQTILEKLEQK 104 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777777643
No 60
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=23.57 E-value=2.2e+02 Score=27.62 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 020135 64 IMEQRVLAIERRSACLENLVNQP 86 (330)
Q Consensus 64 ~m~~rLe~l~~r~~eLe~~lsdP 86 (330)
.+..|++.++++..+- ..++||
T Consensus 21 ~~~~r~~el~~~l~~p-~~~~d~ 42 (371)
T 1zbt_A 21 AVEDRYEELGELLSDP-DVVSDT 42 (371)
T ss_dssp HHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhcCC-cchhCH
Confidence 3445555555554442 333444
No 61
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.43 E-value=2.3e+02 Score=20.95 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 020135 67 QRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRT 115 (330)
Q Consensus 67 ~rLe~l~~r~~eLe~~lsdP~~D~~~~~kl~KE~~~L~~ive~~~~l~~ 115 (330)
.....+..++-.|-..+..-. .+++|.++.|--.++..+.+.|+.+..
T Consensus 6 ~~~~~l~~E~~~lk~E~~stS-aQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSIS-AQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC-TTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888887776544 356666666665555555555544443
No 62
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=23.42 E-value=2e+02 Score=20.27 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHcCCeEEEEeeccCCCCCceEEEEEEecc------ccccccccccceeEEeecCCCCCCC
Q 020135 198 ERYSQKKGWKFEVVGVTESDLRGYKEASAAISGV------GVYGKLKFESGIHRVQRVPLTEKSG 256 (330)
Q Consensus 198 ~~~a~~~g~~~~~i~~~~~~~~g~k~a~~~i~G~------~ay~~lk~E~GvHrv~Rvp~~~~~g 256 (330)
.......|..+.-+...... +.-.+.+.++.. .+...|+.-.||.+|.|++.++.+.
T Consensus 23 ~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~~~~ 85 (88)
T 2ko1_A 23 TGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLEHHH 85 (88)
T ss_dssp HHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCCCCC
T ss_pred HHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccccccc
Confidence 45556678888766655432 244555555532 2456778889999999999998764
No 63
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.83 E-value=1.3e+02 Score=30.10 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEE
Q 020135 183 GEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA 226 (330)
Q Consensus 183 G~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g~k~a~~ 226 (330)
++++......++++|.++.+.-|+.+.++..+.++.++-.+-++
T Consensus 309 pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~ty 352 (485)
T 3qne_A 309 PEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKY 352 (485)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhhe
Confidence 45788888999999999999999999999998888665333333
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.65 E-value=2.6e+02 Score=21.43 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020135 140 ATEELCLAIDEEKRLQSLLL 159 (330)
Q Consensus 140 a~eEl~~l~~~l~~le~~l~ 159 (330)
...|...++++...-++.|.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443
No 65
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.55 E-value=96 Score=29.40 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=78.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH-----HHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Q 020135 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDK-----DMLD------MATEELCLAIDEEKRLQSLLLKSL 162 (330)
Q Consensus 94 ~kl~KE~~~L~~ive~~~~l~~~~edl~~l~eLl~e~~eD~-----El~e------~a~eEl~~l~~~l~~le~~l~~~L 162 (330)
..+..++.+|....-.|..+...++.+.+..... -+|. .|.. .+..+.+.+..+-..++.++..+.
T Consensus 27 eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~---~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs 103 (302)
T 3ibp_A 27 EQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEE---FTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLS 103 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666667766666666665555554432110 0111 2222 222333344445566677777777
Q ss_pred CCCCCCccc---------cceE-E------------EEcCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCC
Q 020135 163 LPKDDADER---------DCIL-E------------VRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRG 220 (330)
Q Consensus 163 lp~d~~D~~---------~~il-e------------I~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~~i~~~~~~~~g 220 (330)
-|.+..|.+ ++.| + ++|--||.-.++.|.+|-..+...+..-.|.-+ +=..+++...
T Consensus 104 ~pgg~~dprL~~LAe~~GGvlLseiYDDI~ieDApyfsAlyGpar~AIVV~Dl~~~~~~L~~l~dcPeD-LyLIegd~da 182 (302)
T 3ibp_A 104 QPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPED-LYLIEGDPQS 182 (302)
T ss_dssp SCCCCCCHHHHHHHHHSSSEEHHHHSTTCCTTTHHHHHHHTGGGGSEEECSSCHHHHHHHTTCCSSCSS-CEEECSCSTT
T ss_pred CCCCCCCHHHHHHHHHhCCEehhhhhcCCChhhHHHHHHHhcccceeeEeCCHHHHHHHHhhccCCCcc-eEEeeCChhh
Confidence 777777653 1111 1 223345555555566666666666665566522 2223344333
Q ss_pred ceEEEEEEe-ccccccccccccceeEEeecCCCCCCCc
Q 020135 221 YKEASAAIS-GVGVYGKLKFESGIHRVQRVPLTEKSGR 257 (330)
Q Consensus 221 ~k~a~~~i~-G~~ay~~lk~E~GvHrv~Rvp~~~~~gR 257 (330)
++..++.++ .++++-- +-+.+.-|+-|.|..+--||
T Consensus 183 FdDs~~~~eele~~v~V-~~s~rqlRySr~Pe~PlfGr 219 (302)
T 3ibp_A 183 FDDSVFSVDELEKAVVV-KIADRQWRYSRFPEVPLFGR 219 (302)
T ss_dssp CCCCCCCEEEETTEEEE-EEETTEEEEEECCSSCSSCH
T ss_pred hccccchHHHhcCCeEE-EeCCceeeecCCCCCCcccH
Confidence 555444332 2222222 33345567777777666665
No 66
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.53 E-value=2.6e+02 Score=21.35 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCC----CCCHHHHHHHHHHHHhhHH
Q 020135 75 RSACLENLVNQP----EASPAEYSKANKELRKLRD 105 (330)
Q Consensus 75 r~~eLe~~lsdP----~~D~~~~~kl~KE~~~L~~ 105 (330)
-+..+++.|.++ .++.+...++...+..++.
T Consensus 12 ~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~ 46 (113)
T 1ud0_A 12 YAFNMKATVEDEKLQGKINDEDKQKILDKCNEIIS 46 (113)
T ss_dssp HHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 344555666532 2355544444444444433
No 67
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.96 E-value=2.5e+02 Score=20.89 Aligned_cols=87 Identities=6% Similarity=-0.040 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CC-CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENLVNQ--PE-ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMAT 141 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~lsd--P~-~D~~~~~kl~KE~~~L~~ive~~~~l~~~~edl~~l-~eLl~e~~eD~El~e~a~ 141 (330)
...++.+...+.+.|..+.. |- .|+.......+++..+..-+..... ..+.+... ..|+.....+++-...+.
T Consensus 8 ~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~---~v~~v~~~g~~L~~~~~~~~~~~~~i~ 84 (118)
T 3uul_A 8 QIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQS---SVGSVLQAGNQLMTQGTLSDEEEFEIQ 84 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 35677888888888887764 22 2888888888888877776655543 33333333 445543223444444455
Q ss_pred HHHHHHHHHHHHHH
Q 020135 142 EELCLAIDEEKRLQ 155 (330)
Q Consensus 142 eEl~~l~~~l~~le 155 (330)
..+..+...-+.+.
T Consensus 85 ~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 85 EQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 68
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=21.24 E-value=3.8e+02 Score=22.70 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHH
Q 020135 65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISE 112 (330)
Q Consensus 65 m~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~ 112 (330)
-++.++.+...+.+.+..++..++ |....+.+.+++..+..-++.|..
T Consensus 10 ~~r~~~dl~~Wl~e~~~~l~s~d~G~Dl~~ve~llkkH~~le~ei~~~~~ 59 (210)
T 3pdy_A 10 TLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRA 59 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888899999988887776 889999999999999988877653
No 69
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.17 E-value=3e+02 Score=21.53 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcCC
Q 020135 72 IERRSACLENLVNQP 86 (330)
Q Consensus 72 l~~r~~eLe~~lsdP 86 (330)
++.-+..+++.|.++
T Consensus 23 aEsliy~~e~~L~e~ 37 (120)
T 2p32_A 23 LESYAFNLKQTIEDE 37 (120)
T ss_dssp HHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhch
Confidence 444556667777664
No 70
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=20.98 E-value=3.6e+02 Score=22.33 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhHHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISE 112 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~lsdP~~--D~~~~~kl~KE~~~L~~ive~~~~ 112 (330)
...++.+...+.+.+..++.+++ |......+.+++..+..-+..+..
T Consensus 9 ~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~ 57 (216)
T 1u5p_A 9 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHED 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999988877 888888999999888887766543
No 71
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=20.71 E-value=1.9e+02 Score=22.43 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 132 EDKDMLDMATEELCLAIDEEKRLQS 156 (330)
Q Consensus 132 eD~El~e~a~eEl~~l~~~l~~le~ 156 (330)
.|++++..=+..+..++.-++.|+.
T Consensus 60 G~~~~R~~RK~~Vk~iQ~~l~~LD~ 84 (87)
T 1m62_A 60 GQDSVRQARKEAVCKIQAILEKLEK 84 (87)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666766656666666666666653
No 72
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=20.57 E-value=3.9e+02 Score=22.59 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020135 107 MHLISELRTKQKEIDGL-KSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLK 160 (330)
Q Consensus 107 ve~~~~l~~~~edl~~l-~eLl~e~~eD~El~e~a~eEl~~l~~~l~~le~~l~~ 160 (330)
++.++++-...+++..+ ..|+.. .+||+++..++.-+.+.+.+++.|+.-+..
T Consensus 11 ~~~L~D~y~aE~q~~~al~~~~~~-a~~p~Lk~~l~~h~~eT~~qi~rLe~i~~~ 64 (166)
T 2gs4_A 11 IHLLSDTYSAEKQLTRALAKLARA-TSNEKLSQAFHAHLEETHGQIERIDQVVES 64 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665554 445554 568999999999999999999999865544
No 73
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.49 E-value=3.5e+02 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020135 66 EQRVLAIERRSACLENL 82 (330)
Q Consensus 66 ~~rLe~l~~r~~eLe~~ 82 (330)
+.++..|+..+..|+++
T Consensus 8 ~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 8 VGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777777777777654
No 74
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.18 E-value=94 Score=21.71 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020135 57 LSNDLIKIMEQRVLAIERRSACLENLVNQ 85 (330)
Q Consensus 57 ~~~~l~~~m~~rLe~l~~r~~eLe~~lsd 85 (330)
++...+..+++++..++..+..|+..+.+
T Consensus 41 ~~~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 41 VSTKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556777888888888888888876653
Done!