RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020135
(330 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 161 bits (409), Expect = 2e-47
Identities = 83/259 (32%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A + R + + QP+ P KE L + + +++ +++ G +
Sbjct: 26 AKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG----LL 81
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
E + + D + E + +D + + L + + D DC L+++AG+GG EA
Sbjct: 82 ELAVEADDEETFNEAVA-ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQD 140
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
+A + +MY R+++ +G+K E++ +E ++ G K + ISG YG L+ E+G+HR+ R
Sbjct: 141 WASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVR 200
Query: 249 VPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
+ GR HTS S + P+ D+ +D+ + DLRID YR+ G+GGQH N T SAVR+
Sbjct: 201 KSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRI 260
Query: 308 THIPTGMTISIQDERSQHM 326
THIPTG+ Q++RSQH
Sbjct: 261 THIPTGIVTQCQNDRSQHK 279
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 143 bits (361), Expect = 1e-40
Identities = 117/262 (44%), Positives = 174/262 (66%), Gaps = 7/262 (2%)
Query: 71 AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
A+ R ++ L+ + A + ++E +L D ++ + Q++I+ + ++
Sbjct: 1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML- 59
Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
+D +M +MA +EL A ++ ++L+ L LLPKD DER+ LEVRAGTGG+EA+L
Sbjct: 60 ---DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAAL 116
Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
FA D+F+MY RY++ + W+ E++ +E + GYKE A ISG GVYG+LKFESG HRVQR
Sbjct: 117 FAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQR 176
Query: 249 VPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED-LRIDTYRSGGSGGQHANTTNSAVRV 307
VP TE GR+HTSA +VA++P+ + ++ N LRIDT+RS G+GGQH NTT+SA+R+
Sbjct: 177 VPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRI 236
Query: 308 THIPTGMTISIQDERSQHMVKD 329
TH+PTG+ + QDERSQH K
Sbjct: 237 THLPTGIVVECQDERSQHKNKA 258
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 129 bits (326), Expect = 1e-35
Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 14/258 (5%)
Query: 72 IERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECS 131
++ + +E L+ +P+ +P + E K+ +EI+ + + I E
Sbjct: 1 MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKI--------------EEIENITNRIKETQ 46
Query: 132 EDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAV 191
E ++L E EK L L + L I+E+R GTGGEEA+LFA
Sbjct: 47 EFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFAR 106
Query: 192 DVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPL 251
D+F+MY RY+++KGW EV + E+DL G +E + G YG LK+ESG+HRVQRVP+
Sbjct: 107 DLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPV 166
Query: 252 TEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIP 311
TE GR+HTS +VA+LP+ +E D+ +R EDL+I+T+R+ G GGQ+ N T SAVR+TH+P
Sbjct: 167 TESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226
Query: 312 TGMTISIQDERSQHMVKD 329
TG+ +S Q+ERSQ+ K
Sbjct: 227 TGIVVSCQNERSQYQNKQ 244
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 52.3 bits (125), Expect = 2e-09
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 25/83 (30%)
Query: 269 PQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHI------------------ 310
A + + + L I RS G GGQ+ N NS V
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 311 -------PTGMTISIQDERSQHM 326
+ ++ + R Q
Sbjct: 68 HKNKINKAGELVLTSESSRYQFR 90
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 28.7 bits (64), Expect = 0.90
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 94 SKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSE-----DKDMLDMATEELCLAI 148
K NK + K++ + ++ S+ ++ ++ E++ A
Sbjct: 166 RKMNKHVLKIQKELEEA--KEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQ 223
Query: 149 DEEKRLQSLLLKSL-------LPKDDADERD 172
E+K L ++ + L + + D
Sbjct: 224 SEQKNLFLVIFQRFIMILTEHLVRCETDGTS 254
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.7 bits (58), Expect = 4.3
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 91 AEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSL-IYECSEDKDMLDMATEELCLAID 149
AE + NKEL +R L K+ K L I+ D D M L +
Sbjct: 20 AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 79
Query: 150 -EEKRLQSLLLKSLLPKDD 167
EK++ L + L+ +
Sbjct: 80 YTEKQIGYLFISVLVNSNS 98
>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 225
Score = 26.3 bits (57), Expect = 5.2
Identities = 7/67 (10%), Positives = 23/67 (34%)
Query: 33 QRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAE 92
+++ + +L+ + + I + A +R++ L + + +
Sbjct: 141 AKYYFNKDLKDLNLAEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLMHYHKRITDKQ 200
Query: 93 YSKANKE 99
+ A K
Sbjct: 201 WEDAKKI 207
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 25.5 bits (56), Expect = 8.1
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 154 LQSLLLKSLLPKDDADERDCILEVRAGTGG-------------EEASLFAVDVFKMYE 198
Q ++ L P + R + G G EE +D+ +MY
Sbjct: 17 NQYKMMTMLDPANAERYRRLQTIIERGYGLQMRELDREFGELKEETCRTIIDIMEMYH 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.360
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,130,328
Number of extensions: 50996
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 13
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)