Query 020136
Match_columns 330
No_of_seqs 232 out of 2105
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 6.8E-38 1.5E-42 293.3 31.9 266 63-329 12-282 (455)
2 PRK00187 multidrug efflux prot 100.0 5.9E-35 1.3E-39 275.3 33.4 267 62-329 4-277 (464)
3 PRK10367 DNA-damage-inducible 100.0 1.4E-34 3.1E-39 270.5 32.6 264 65-329 6-273 (441)
4 PRK10189 MATE family multidrug 100.0 2.5E-33 5.5E-38 264.5 33.9 266 63-329 24-300 (478)
5 PRK09575 vmrA multidrug efflux 100.0 1.4E-32 3E-37 258.7 31.1 264 65-329 9-276 (453)
6 PRK01766 multidrug efflux prot 100.0 4.8E-32 1E-36 255.6 32.6 269 60-329 4-280 (456)
7 KOG1347 Uncharacterized membra 100.0 9.3E-28 2E-32 223.7 25.9 267 61-328 21-289 (473)
8 TIGR00797 matE putative efflux 100.0 8.1E-27 1.7E-31 211.9 30.9 253 76-329 1-257 (342)
9 PRK00187 multidrug efflux prot 99.9 1E-24 2.2E-29 205.8 25.8 208 61-269 229-443 (464)
10 PRK01766 multidrug efflux prot 99.9 6.3E-24 1.4E-28 200.4 25.7 207 62-269 233-441 (456)
11 COG0534 NorM Na+-driven multid 99.9 1.5E-23 3.1E-28 196.7 26.1 213 58-272 231-445 (455)
12 PRK10189 MATE family multidrug 99.9 5.7E-23 1.2E-27 194.2 28.1 211 62-273 253-465 (478)
13 PRK09575 vmrA multidrug efflux 99.9 9.7E-23 2.1E-27 191.9 26.4 206 61-269 227-435 (453)
14 TIGR01695 mviN integral membra 99.9 2.1E-21 4.5E-26 185.5 29.3 232 63-303 218-454 (502)
15 PRK10367 DNA-damage-inducible 99.9 1.7E-19 3.7E-24 169.0 27.1 199 65-270 229-431 (441)
16 TIGR01695 mviN integral membra 99.9 9.3E-19 2E-23 167.2 30.2 253 70-328 2-263 (502)
17 TIGR02900 spore_V_B stage V sp 99.9 6.1E-19 1.3E-23 167.9 28.2 243 71-317 2-254 (488)
18 PF03023 MVIN: MviN-like prote 99.9 1.5E-18 3.2E-23 163.0 29.6 207 63-271 193-404 (451)
19 PRK15099 O-antigen translocase 99.8 1.1E-18 2.4E-23 162.8 27.2 251 70-329 3-257 (416)
20 TIGR02900 spore_V_B stage V sp 99.8 3E-18 6.6E-23 163.1 28.2 204 61-269 218-433 (488)
21 COG0728 MviN Uncharacterized m 99.8 2E-17 4.3E-22 154.0 30.9 209 62-272 226-439 (518)
22 PF01554 MatE: MatE; InterPro 99.8 9.2E-21 2E-25 153.6 6.3 160 76-236 1-162 (162)
23 PRK15099 O-antigen translocase 99.8 3.3E-17 7.1E-22 153.0 25.7 202 61-269 208-411 (416)
24 PRK10459 colanic acid exporter 99.8 2.7E-16 5.8E-21 150.0 28.7 201 63-269 202-404 (492)
25 COG2244 RfbX Membrane protein 99.7 7.2E-15 1.6E-19 139.7 26.4 187 63-255 208-396 (480)
26 PF03023 MVIN: MviN-like prote 99.6 1.7E-12 3.8E-17 122.0 28.3 225 98-327 5-237 (451)
27 TIGR00797 matE putative efflux 99.5 1.2E-12 2.7E-17 118.8 16.1 133 60-193 208-341 (342)
28 COG0728 MviN Uncharacterized m 99.5 2.8E-10 6E-15 106.6 30.0 258 68-327 7-271 (518)
29 PF01943 Polysacc_synt: Polysa 99.4 3.9E-10 8.5E-15 98.6 27.8 243 71-328 2-246 (273)
30 PRK10459 colanic acid exporter 99.4 6.4E-10 1.4E-14 106.2 26.2 240 68-327 5-247 (492)
31 KOG1347 Uncharacterized membra 99.3 1.7E-11 3.7E-16 115.0 10.2 205 64-269 243-451 (473)
32 PF13440 Polysacc_synt_3: Poly 99.3 2.3E-08 5.1E-13 86.4 28.0 221 86-328 2-224 (251)
33 COG2244 RfbX Membrane protein 99.1 2.2E-08 4.8E-13 95.3 24.5 244 67-325 5-251 (480)
34 PF07260 ANKH: Progressive ank 98.9 5.2E-06 1.1E-10 72.1 27.5 250 66-322 9-270 (345)
35 PF14667 Polysacc_synt_C: Poly 98.9 6.6E-08 1.4E-12 76.6 14.7 79 190-270 2-80 (146)
36 PF04506 Rft-1: Rft protein; 98.8 9.5E-07 2.1E-11 84.5 22.3 201 68-269 253-469 (549)
37 KOG2864 Nuclear division RFT1 98.5 7.9E-05 1.7E-09 67.7 23.2 196 72-269 243-448 (530)
38 PF01943 Polysacc_synt: Polysa 97.7 0.0003 6.5E-09 61.2 9.3 72 64-136 201-273 (273)
39 PF13440 Polysacc_synt_3: Poly 96.5 0.015 3.2E-07 49.9 8.7 67 69-135 184-251 (251)
40 COG4267 Predicted membrane pro 95.4 2 4.3E-05 39.0 23.6 136 119-269 75-210 (467)
41 COG4267 Predicted membrane pro 72.7 79 0.0017 29.2 13.3 115 140-258 318-434 (467)
42 TIGR01299 synapt_SV2 synaptic 67.7 1.5E+02 0.0032 30.3 24.1 20 120-139 213-232 (742)
43 PRK03612 spermidine synthase; 57.3 1.9E+02 0.0041 28.0 21.0 44 222-267 154-197 (521)
44 PF03904 DUF334: Domain of unk 50.5 78 0.0017 26.7 6.8 58 144-201 146-212 (230)
45 PF07260 ANKH: Progressive ank 49.2 54 0.0012 29.4 6.0 35 66-100 233-268 (345)
46 PF02487 CLN3: CLN3 protein; 47.1 76 0.0017 29.6 7.0 30 58-87 233-262 (402)
47 PF05313 Pox_P21: Poxvirus P21 44.5 1E+02 0.0022 25.1 6.3 26 244-269 135-160 (189)
48 PF08627 CRT-like: CRT-like; 42.2 1.2E+02 0.0027 23.0 6.1 28 70-97 51-78 (130)
49 PF01102 Glycophorin_A: Glycop 41.0 37 0.00081 25.7 3.3 25 247-271 68-92 (122)
50 PF04505 Dispanin: Interferon- 39.8 1.3E+02 0.0028 21.0 5.9 34 126-159 38-71 (82)
51 TIGR00927 2A1904 K+-dependent 37.8 56 0.0012 33.9 4.8 33 129-161 986-1018(1096)
52 PF14184 YrvL: Regulatory prot 35.3 2.1E+02 0.0045 22.1 12.7 100 152-253 8-108 (132)
53 PRK10160 taurine transporter s 32.9 3.3E+02 0.0072 23.7 12.7 12 290-301 191-202 (275)
54 PRK10739 putative antibiotic t 29.6 3.3E+02 0.0071 22.6 10.0 62 120-186 14-75 (197)
55 PF04506 Rft-1: Rft protein; 29.5 5.5E+02 0.012 25.2 18.7 41 72-112 5-46 (549)
56 COG4536 CorB Putative Mg2+ and 27.8 3.3E+02 0.0072 25.2 7.5 96 73-179 59-156 (423)
57 KOG3880 Predicted small molecu 25.9 2.5E+02 0.0054 25.6 6.3 36 54-89 233-268 (409)
58 COG4536 CorB Putative Mg2+ and 22.7 6.2E+02 0.014 23.5 9.0 33 228-262 68-104 (423)
59 TIGR01183 ntrB nitrate ABC tra 22.6 4.5E+02 0.0097 21.7 12.7 15 233-247 69-83 (202)
60 PF05975 EcsB: Bacterial ABC t 21.9 6.3E+02 0.014 23.3 17.1 40 140-179 89-130 (386)
61 PF01306 LacY_symp: LacY proto 21.6 6.8E+02 0.015 23.5 20.3 64 68-139 220-289 (412)
62 PF03176 MMPL: MMPL family; I 21.2 5.9E+02 0.013 22.7 8.9 19 215-233 169-187 (333)
63 TIGR00765 yihY_not_rbn YihY fa 20.9 5.4E+02 0.012 22.1 22.1 23 217-239 192-214 (259)
64 TIGR00427 membrane protein, Ma 20.3 5.1E+02 0.011 21.5 9.2 61 120-185 17-77 (201)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=6.8e-38 Score=293.27 Aligned_cols=266 Identities=26% Similarity=0.352 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 142 (330)
.++..|+++++++|++++++.+.+++.+|+.++||+|++++++.++++++...+ +.+..+++.+.+++++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456779999999999999999999999999999999999999999999997766 6789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020136 143 MMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (330)
++++..+++++++++++++..+ .+++.++++.+++.++++.+.+.+|+++..++.|+..++.++.+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977775 577999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCHHhHHHHHHHHHHHHHH
Q 020136 222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS 297 (330)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~-~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (330)
++++++++|+++|++|++. ++ +|+.|+++||++++++.+++..++++++++ .....+..+++++.+++++++|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 999999999999999999999999988653 2332334355678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
++++..+...+.+.+.+.+++|+..+|||+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~ 282 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIA 282 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999875
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.9e-35 Score=275.26 Aligned_cols=267 Identities=21% Similarity=0.201 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
+++++.|+++++++|.++++++..+.+.+|+.++|++|++++++++++.++.+.+ ..+..|++++.+++++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3456789999999999999999999999999999999999999999999997765 667899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (330)
+++++..++++.+..+++++..++.++.++++.+++.|+|+.+.+.+|++++.++.|+..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999998888776666779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCC--C-CCCCCHHhHHHHHHHHHHH
Q 020136 222 IAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGACGP--T-WSGFSWKAFHSLWSFVRLS 294 (330)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~ 294 (330)
.++++.++|+++||+|++.. ++|+.|+++|+.+++++..+...+++++++.+. + ++++.++.++.+|++++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999853 489999999999999988887777766533221 1 2222334567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
+|.++++..+...+.+.+.+++++|+.++||++++
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~ 277 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIA 277 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=270.53 Aligned_cols=264 Identities=19% Similarity=0.222 Sum_probs=235.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (330)
Q Consensus 65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~-g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 143 (330)
++.|++++++.|.+++++++.+++.+|+.++|++ |+.++++++++.++.+.. ..+..+++.+.+++++|++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 4468899999999999999999999999999997 677899999999996665 66888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (330)
+++..++++.+++++++++.++ ..+.++++.+++.|+|+.+.+.+|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999888754 668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCHHh-HHHHHHHHHHHHHHHHH
Q 020136 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKA-FHSLWSFVRLSLASAVM 300 (330)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~p~~~~ 300 (330)
+++++++|+++|+++++.+++|+.|+++||.+++++.+++..++++++++.++++ +..++. .+.+|++++++.|..++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988899999999999999999988877776532211111 101112 24689999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 301 LCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 301 ~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
...+...+.+.+.+++++|+.++|||+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G~~alAa~~I~ 273 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLGSDIIAVNAVL 273 (441)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999999999875
No 4
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.5e-33 Score=264.55 Aligned_cols=266 Identities=17% Similarity=0.227 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 142 (330)
.-+..|+++++++|.++++++..+++.+|+.++|++|++++|+++++.++.... +.+..|++++.+++++|++|++|++
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 335689999999999999999999999999999999999999999999996554 7789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 020136 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (330)
++++..++++.++++++++.+++ +++.++++.+++ .|+|+.+.+..|+++..++.|+..+....++++||.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 99999999999999999988865 668899999984 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCC-CCHHhHHHHHHHH
Q 020136 220 AVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSG-FSWKAFHSLWSFV 291 (330)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l 291 (330)
+++++++.++|+++++++++.+ ++|+.|+|+|+.+++++..++..+++.++++ +.++++ +...+++.+++++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 262 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM 262 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence 9999999999999999999853 7999999999999999999887776654322 111222 1123567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
++|+|.+++.......+.+.+.+++++|+.++|||+++
T Consensus 263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~ 300 (478)
T PRK10189 263 GIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIA 300 (478)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.4e-32 Score=258.69 Aligned_cols=264 Identities=17% Similarity=0.197 Sum_probs=237.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (330)
Q Consensus 65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 143 (330)
+..|++++++.|.+++++.+.+++.+|+.++|+ .|+++++++++++++.... ..+..+++.+.+++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 456899999999999999999999999999999 5999999999999996655 56788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (330)
+++..++++.++++++++.+++ ++++++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988865 668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHH
Q 020136 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKAFHSLWSFVRLSLASAVML 301 (330)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~~ 301 (330)
++++.++|+++|+++++.+++|+.|+++|+.+++++..++..+++++++.+.+++ +..+.+++.+|+++++|+|..++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999988899999999999999999998888777644433332 111335667899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCc-HHHhhhccc
Q 020136 302 CVEIWYFMALILFAGYLKN-AKLSVAGLS 329 (330)
Q Consensus 302 ~~~~~~~~~~~~~~~~lg~-~~laa~~i~ 329 (330)
..+...+.+.+.+.+++|+ .++|+++++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~lAa~~i~ 276 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGSALTVGAYAIV 276 (453)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999999999999996 579998764
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.8e-32 Score=255.61 Aligned_cols=269 Identities=21% Similarity=0.337 Sum_probs=240.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136 60 SREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 60 ~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~ 139 (330)
.+..++.+|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++.... ..+..|++.+.+|.++|++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 455677889999999999999999999999999999999999999999999985544 5678899999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (330)
|++++++..++++.+.++++++++++ +++.++++.+++.|+++.+.+..|+++.+++.|+..+..++++++|+.||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999887765 55778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCCccchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCHHhHHHHHHHH
Q 020136 219 LAVIAAVALLLHTILSWLLILK----LGLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFV 291 (330)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~----~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l 291 (330)
+++.++++.++|+++++++++. .++|+.|+++|+.+++++..++..+++++++.. +.+.++.++.++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999864 248999999999999999999888887654321 122333344567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
++++|..++...+...+.+.+.+++++|+.++|+++++
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~ 280 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIA 280 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.96 E-value=9.3e-28 Score=223.75 Aligned_cols=267 Identities=45% Similarity=0.742 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~ 140 (330)
+....+.|++++++.|.++..+.++....+++.++||+|+.++++.+++++..+...+.+..|+..+..++++|++|+++
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 33378889999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
.+......+++..+....+++.+.++++.++++..+++++++...+..|.++.+++.+..........++|+++++....
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (330)
++.....++|++++|++++..++|..|++++..+++++...+..+|.........|..++++ ++.++++++++.|++++
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999999998875577889988888 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc--HHHhhhcc
Q 020136 301 LCVEIWYFMALILFAGYLKN--AKLSVAGL 328 (330)
Q Consensus 301 ~~~~~~~~~~~~~~~~~lg~--~~laa~~i 328 (330)
.++|||.|+++.++.+.+++ .++++++|
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI 289 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSI 289 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 99999999999999999997 44555544
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.96 E-value=8.1e-27 Score=211.94 Aligned_cols=253 Identities=32% Similarity=0.531 Sum_probs=225.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHH
Q 020136 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (330)
Q Consensus 76 P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 155 (330)
|.++++++..+...+|+.+++++|++++++++++.++.... ..+..+++++..|.+++++|++|+|+.++..+.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999886655 66889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 020136 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234 (330)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~ 234 (330)
.+++++.+++ +++++++..+++.+++..+.+..|+++++++.++.+++.+..+++|+.||++.+++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999988864 668899999988788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSGA-CGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311 (330)
Q Consensus 235 ~~li~-~~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 311 (330)
+++++ .++ +|+.|+++++.+++++..++..+++++++ .+.+|+...+...+.+|++++++.|..+.++..++.+.+.
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99998 677 88999999999999999998887776522 2223333233456789999999999999999999999999
Q ss_pred HHHhhcCCcHHHhhhccc
Q 020136 312 ILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 312 ~~~~~~lg~~~laa~~i~ 329 (330)
+.+++.+|+.++++++++
T Consensus 240 ~~i~~~~g~~~v~~~~~a 257 (342)
T TIGR00797 240 ALLVARLGSIALAAHQIA 257 (342)
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 999999999988887653
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.94 E-value=1e-24 Score=205.76 Aligned_cols=208 Identities=19% Similarity=0.166 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~ 140 (330)
+.+++..|+++++++|.++.++.+.....+|+.+++++|++++++++++.++.... +.+..|++.+.+++++|++|+||
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999999999999999999999996654 77899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (330)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 214 (330)
++++++..+.++.++.+.+++.+++ +++.+++.+++.. ++ |+.+.+..|+++.+++.++.+++.+..+++||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999888764 6688999999853 44 7889999999999999999999999999999999
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 215 KIMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 215 ~~~~~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
|++.++++++++. ++++++++++.+.+++|+.|+|+++.+++++..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999999999889999999999999999998877666644
No 10
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=6.3e-24 Score=200.40 Aligned_cols=207 Identities=20% Similarity=0.170 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
.+++..|+++++++|.++++..+.+...+++.+++++|++++++++++.++.+.. +.+..|++.+.++.++|++|+||+
T Consensus 233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3456789999999999999999999999999999999999999999999996665 668899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
+++++..+.++.++..++++.+++ +.+.+++..+|..|+++.+.+..|+++..++.++.+++.+..+++||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999988764 6689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
+.++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 889999999998888999999999999999999988777765
No 11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=1.5e-23 Score=196.70 Aligned_cols=213 Identities=20% Similarity=0.227 Sum_probs=198.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhc
Q 020136 58 DFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYG 137 (330)
Q Consensus 58 ~~~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g 137 (330)
+..+++++..|++++++.|..+.+++......+.+.+++++|++.+|+++++.++.+.. +.+..|++++++++++|++|
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 34466778899999999999999999999999999999999999999999999996665 77999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 020136 138 AGQLDMMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI 216 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 216 (330)
++|.|++++..+.+..++.++++...+ ++++++++..+|..|+++.+.+..++++..+..++.+.+.+..+++||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998886 4779999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020136 217 MVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 272 (330)
Q Consensus 217 ~~~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~ 272 (330)
+.+++.++++. ++.+++.+++.+.+ +|..|.|++...++.+..+...++++++++
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999988 77899999998876 899999999999999999999888877443
No 12
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=5.7e-23 Score=194.21 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
.+++.+|++++++.|..+......+...+.+.+++++|+.++|+++++.++.+.. +.+..|++++.+++++|++|+||.
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3567889999999999999999999999999999999999999999999996654 678999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
+++++..+.+..++.+.++.++++ +++++++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999998888865 6689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020136 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG 273 (330)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~ 273 (330)
++++++. ++.+++.+++.+.+++|+.|+|++..+++.+..++..+.+++++++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~ 465 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWL 465 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999988 8889999998887889999999999999999999887777664443
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=9.7e-23 Score=191.92 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~-~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~ 139 (330)
+.+++..|++++++.|..+++....+...+.+.+++++|+ .++|+++++.++.... +.+..|++.+.+++++|++|+|
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence 4556778999999999999999999999999999999885 5899999999996654 6789999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ-TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (330)
|+|++++..+.++.+++..+++.+++ +.+.+++..+|+. |+|+.+.+..|+++..++.++.+++.+..+++||.||++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999988865 6689999999984 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
.+++.++...++++++.+++... +|+.|+|+++.+++++..++..+++++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999888765 799999999999999998888777765
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.90 E-value=2.1e-21 Score=185.46 Aligned_cols=232 Identities=19% Similarity=0.153 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 142 (330)
+++..|++++++.|..+++....+...+|+.+.+.+|+.++++|+.+.++.+.....+..+++++..|.+++++|+||++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34567999999999999999999999999988666999999999999999776533467889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (330)
+.++.++++..+...++++.+++ .+++++++.++.+ |++..+.+..++++++++.++.+++......+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998865 6689999988755 567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHH
Q 020136 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLAS 297 (330)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ 297 (330)
.+++.++++.++|+++++++++. +|..|+|+|+.+++.+..++..++++|+..... ..+..+.+.|...++
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~as 448 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGIL-------PFGVLKVLAKLVIAS 448 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-------chHHHHHHHHHHHHH
Confidence 99999999999999999999876 799999999999999999988877776322111 123344455555555
Q ss_pred HHHHHH
Q 020136 298 AVMLCV 303 (330)
Q Consensus 298 ~~~~~~ 303 (330)
.++...
T Consensus 449 ~~m~~~ 454 (502)
T TIGR01695 449 AIIGGV 454 (502)
T ss_pred HHHHHH
Confidence 555443
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.86 E-value=1.7e-19 Score=169.03 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=168.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchH
Q 020136 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (330)
Q Consensus 65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~ 144 (330)
+..|++++++.|..+++.+......+-+.+++++|++++|+++++.++.+.. +.+..|++++.+++++|++|+||.+++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4689999999999999999999999999999999999999999999995554 779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chhHHH
Q 020136 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS---KIMVLA 220 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~ 220 (330)
++..+.+..++.+++++.+++ +++++++..+|..|+|+.+.+..++++.++..+.........++++|.+ |++.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999988865 6688999999999999999999999999876443334444444455555 599999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 020136 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~ 270 (330)
++++++..+ .++..+ ++|..|.|++..+++.+..+++.+.++++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887542 111222 37999999999999999999888777664
No 16
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.86 E-value=9.3e-19 Score=167.23 Aligned_cols=253 Identities=14% Similarity=0.076 Sum_probs=198.4
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHH-HHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchHHH
Q 020136 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV 146 (330)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~-aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~ 146 (330)
+.|-+.-..+.++.+.+.+++|+.++++ +|+++. ++++.+.++.+.+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4677788889999999999999999999 999999 899999999766533233 467888777776654333 57777
Q ss_pred HHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136 147 YLQRSWIILITTAL-MLMF-MYIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (330)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (330)
...++.......+. +..+ .+++++++..++ +.+++..+.+..|++++.++.++..+....++++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 3444 466788888887 4577777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchHH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136 223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (330)
Q Consensus 223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (330)
+++.++++++..+++ ..++|..|++ +++.+++.+..++..+++++++.+. +.++ ....+.+|++++.+.|..+.
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLL-KPRF-NFRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-cCcC-CCCChhHHHHHHHHHHHHHH
Confidence 999988877754443 3458999998 9999999999888877766533211 1111 12345789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHhhhcc
Q 020136 301 LCVEIWYFMALILFAGYLKNAKLSVAGL 328 (330)
Q Consensus 301 ~~~~~~~~~~~~~~~~~lg~~~laa~~i 328 (330)
.........+...+.+.+|+.++++.+.
T Consensus 236 ~~~~~~~~~id~~~~~~~~~~~v~~~~~ 263 (502)
T TIGR01695 236 SSASQITLLINTALASFLEIGSVSALYY 263 (502)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 9999999999988888889888877654
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.85 E-value=6.1e-19 Score=167.89 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=198.9
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHH
Q 020136 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (330)
Q Consensus 71 l~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~ 149 (330)
+|-+.|.+++++...+.+++|+.+++| +|+++.|+++.+.++...+......|++++....++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999987765443446899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 020136 150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL 228 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~ 228 (330)
.++++..+.+++.+++ +++.+++...++.+++. ..++++..+..++..+....++++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888765 55777777766666643 356788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCccchHHHHHHHHHHHHHHHHHHHHHhcCC-C--CCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136 229 LHTILSWLLILK-----LGLGLVGAAVALNASWWFIDITRLLYIFSGAC-G--PTWSGFSWKAFHSLWSFVRLSLASAVM 300 (330)
Q Consensus 229 ~~i~l~~~li~~-----~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (330)
+|+.++..+++. .++|+.|+++++.+++++..++..++++++++ + ..+.++.+.+++.+|++++.+.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998887666542 23678889999999999999987666554322 1 112122233456889999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 020136 301 LCVEIWYFMALILFAGY 317 (330)
Q Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (330)
++.......+.+.++++
T Consensus 238 ~~~~~~~~~~d~~ii~~ 254 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQ 254 (488)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998888877776654
No 18
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.85 E-value=1.5e-18 Score=162.99 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 142 (330)
..+..|++++...|.++.....++...+|+.+.+.+++..+++++.+.++.+.....+..+++++..|..+++..+||.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34457999999999999999999999999999999999999999999999998766678899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (330)
+.++.+++++....++.+|.++. +.+++++.+++. -+++-.+....+++++++++|+.+++..+...+.+.||+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999864 669999999763 3667778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136 218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA 271 (330)
Q Consensus 218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~ 271 (330)
.+++.++++.++|++++.+++.. +|..|.++|+.++.++.++++.++++|+.
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998888 89999999999999999999888887743
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=99.85 E-value=1.1e-18 Score=162.81 Aligned_cols=251 Identities=10% Similarity=0.002 Sum_probs=202.1
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHH
Q 020136 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (330)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~ 148 (330)
++|-+......++...+.+++-..++.+ +|+++.|.++..+.+...+......|++++.+..++|+ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5566777788899999999999999999 99999999999998877665545778888888889987 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020136 149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 227 (330)
..++.+..+.+++++++ +++.+++...++.+++. ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888864 66889998887777652 34556666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGP-TWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW 306 (330)
Q Consensus 228 ~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 306 (330)
++|+.+ +++.+.. .|+.|+++|+.+++.+..+...+++++++..+ ++.++ +.+++.+|+++++|.|...++...+.
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 49999999999999999887777776533211 11111 22466789999999999999999999
Q ss_pred HHHHHHHHhh-cCCcHHHhhhccc
Q 020136 307 YFMALILFAG-YLKNAKLSVAGLS 329 (330)
Q Consensus 307 ~~~~~~~~~~-~lg~~~laa~~i~ 329 (330)
.....+.+++ .+|+.++++.+++
T Consensus 234 ~~~~~~~~l~~~~g~~~vg~y~~a 257 (416)
T PRK15099 234 AYVMMRNLLAAHYSWDEVGIWQGV 257 (416)
T ss_pred HHHHHHHHHHhcCCHHHhhHHHHH
Confidence 9999988885 9999998887653
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.84 E-value=3e-18 Score=163.11 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CCh------hHHHHH----HHHHHHHHHHHHHHHHHHhhhHH
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST------LALAAV----SVENSVIAGFSFGAMLGMGSALE 129 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~------~~~aa~----~~~~~i~~~~~~~~~~~l~~a~~ 129 (330)
+.+++.+|++++++.|..++++...+.+.+|+.++++ +++ .+.+.+ +++.++.... ..+..+++++..
T Consensus 218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~ 296 (488)
T TIGR02900 218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence 3456688999999999999999999999999999987 432 122222 3444555555 456789999999
Q ss_pred hHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVK 208 (330)
Q Consensus 130 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 208 (330)
|.+++++|++|+++.++..++...+..+++++.+++ .+++++++.++..++ .+..++++++++.++..++....+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988864 668899998876544 367889999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 209 FLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 209 ~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
++++.||+|.+++.++++.++|++++++++....+|+.|+++|+.+++++..++..++.+|
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999884344899999999999999999988877765
No 21
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.83 E-value=2e-17 Score=153.99 Aligned_cols=209 Identities=16% Similarity=0.068 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
.+....|++.+...|..+....+++...+|+.+.+.+.+..++.+..+.++++...-.+..++++...|..|++..++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 34467899999999999999999999999999999999999999999999999876668999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI 216 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 216 (330)
++.++..+++++++.++.+|.++. ..+++|+.+.+. -+++....+...+..+.++.+++.+..++...+.+.+|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999975 669999998762 256667778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020136 217 MVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 272 (330)
Q Consensus 217 ~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~ 272 (330)
|.|+++++++.++|+.+++++... +|..|.++++.++.++++..+++.++++..
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999888777 788899999999999999988888877443
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.82 E-value=9.2e-21 Score=153.55 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=153.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHH
Q 020136 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (330)
Q Consensus 76 P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 155 (330)
|.++++++..+...+|+.+++++|++++++++++.++.+.. ..+..|++++.++.++|++|++|++++++.++.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999997766 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHH
Q 020136 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL 233 (330)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~l 233 (330)
.+++++++++ +++.+++..+++.|+++.+.+..|+++..++.|+..+.....++++|.||++.+++.++++. ++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999976 66889999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 020136 234 SWL 236 (330)
Q Consensus 234 ~~~ 236 (330)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.80 E-value=3.3e-17 Score=152.96 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~ 139 (330)
+++++.+|++++++.|..++++...+...+|+.++++ +|++++|+|+.+.++.+.+...+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 4456778999999999999999999999999999985 99999999999999977554568899999999999995 6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (330)
|+++.++.+++.......++++.+++ ++++++++.++.+++ .+.+.+++++++++..+...+......+...++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998888888887764 579999999987665 334678899999999988888877777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
.....+...++++++++++++. +|..|+++++.+++.+..++......+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988889999999999988 799999999999999999877655543
No 24
>PRK10459 colanic acid exporter; Provisional
Probab=99.78 E-value=2.7e-16 Score=149.97 Aligned_cols=201 Identities=11% Similarity=0.043 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
+++..|++++++.|...+++...+...+|+.++|+ +|++++|.|+.++++.+.....+...+++...|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 35667999999999999999999999999999999 89999999999999977654445556778888999886 6788
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
++.++.+++...+...+++|+++. .+++++++.++.+++ ...+...+++++++..+..+.......+++.||+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 899999999999999889988864 668899988776554 35678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
+.+++.++++++..+++... +|+.|+++|+.+++.+..+...++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777765 799999999999999998888877755
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.71 E-value=7.2e-15 Score=139.72 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
.++..|++++.+.|..++.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++.+..|..++.+.++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46788999999999999999999999999999999 9999999999888886655 568889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
++.++..++...+....+++..++ .+++++++.++.+++.. .+...+++++++.++..+.......+++.|+++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998865 66888998877665532 278889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Q 020136 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 255 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~ 255 (330)
+.+.++.++|++++++++.. +|..|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999988 7999999999 44
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.60 E-value=1.7e-12 Score=122.04 Aligned_cols=225 Identities=15% Similarity=0.130 Sum_probs=183.9
Q ss_pred CChh-HHHHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 020136 98 ISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILS 174 (330)
Q Consensus 98 ~g~~-~~aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 174 (330)
+|.. +..+|.++.++.+.+...+. .+++++..|...+.. ++++++.++..+..+.+..+..+.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 57789999999887644444 468999999999999 8899999999999888887777777754 778899998
Q ss_pred Hc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchHH
Q 020136 175 LI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGAA 249 (330)
Q Consensus 175 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G---~~Gaa 249 (330)
++ +.+++..+.+.+++++..+..++.++..++.+++|+.+|...+....++.++..++..+++... +| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 5678889999999999999999999999999999999999999999888887666554444444 66 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhc
Q 020136 250 VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAG 327 (330)
Q Consensus 250 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~ 327 (330)
+++.++.++..++.+...+|...+.+. .+. ...++.|++++...|..+..........+...+++.+++..+++..
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KFD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc-cCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 999999999999988888763332111 111 1234688899999999999999999999999999999998887654
No 27
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.48 E-value=1.2e-12 Score=118.79 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136 60 SREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 60 ~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~ 139 (330)
.+++++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.+.. ..+..+++++..|.+++++|++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 344566789999999999999999999999999999999999999999999996655 5688999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWM 193 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~ 193 (330)
|.++.++.+++++++..+++++.+++ .++++++.+++..|+++.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 6688999999999999999998888764
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.46 E-value=2.8e-10 Score=106.59 Aligned_cols=258 Identities=14% Similarity=0.051 Sum_probs=201.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CCh-hHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchH
Q 020136 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST-LALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMM 144 (330)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~-~~~aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~ 144 (330)
.+++|-+.-....++++.+.+++-..+++. +|. ....++.+++++-+.+--.+. .+++++..|...++..+++.++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457777777888888888899998888888 998 468899999999987644443 34689999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
++..+....+...+.+.++++ .++++++.+.. +. |++....+....++..+..++.++.....++++..++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 888777776666666666654 66777777444 33 234333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 300 (330)
+.-++-++.-+...+++.+.......+.++++.++-+.+.++.++.++|.....+++ +. ..-..+|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~-~~~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FG-FKDPGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CC-CCchhHHHHHHHHHHHHHH
Confidence 999888877775666555544334678999999999999999999998843222111 11 1125788999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHhhhc
Q 020136 301 LCVEIWYFMALILFAGYLKNAKLSVAG 327 (330)
Q Consensus 301 ~~~~~~~~~~~~~~~~~lg~~~laa~~ 327 (330)
.....+...+.+.+++.+.+...+..+
T Consensus 245 ~sisQi~lli~~~iAS~l~~Gsis~l~ 271 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEGSVSWLY 271 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 999999999999999999887766543
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.43 E-value=3.9e-10 Score=98.59 Aligned_cols=243 Identities=17% Similarity=0.202 Sum_probs=170.6
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHH
Q 020136 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (330)
Q Consensus 71 l~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~ 149 (330)
+|-+.-....++...+.+++-..++.| +|+++.|.++....+.+.+......|++++....+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455667778889999999999999999 99999999999999987765555778888887777776432 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 020136 150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL 229 (330)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~ 229 (330)
.......+.+++..+...... .++.+ +. ...+........++.........++++.++.+.....+++..+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNP-SL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCc-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433333333332222222 33333 22 12222222223357888888999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM 309 (330)
Q Consensus 230 ~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 309 (330)
.+++..+++... .+..+..++..++..+..++..++.+++.+ .++ .....+..+++++.+.|..+..+..+....
T Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFLG-SSLWGFLLGLVISSLVSLIISLFYLRRKLR-PRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666542 458899999999999998888877775332 222 222367888999999999999999999988
Q ss_pred HHHHHhhcC-CcHHHhhhcc
Q 020136 310 ALILFAGYL-KNAKLSVAGL 328 (330)
Q Consensus 310 ~~~~~~~~l-g~~~laa~~i 328 (330)
....+++.+ |+.+++..++
T Consensus 227 ~d~~ii~~~~g~~~vg~Y~~ 246 (273)
T PF01943_consen 227 IDRLIIGYFLGPEAVGIYSV 246 (273)
T ss_pred hHHHHHHHhCCHHHHHHHHH
Confidence 888877666 6666655443
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.36 E-value=6.4e-10 Score=106.19 Aligned_cols=240 Identities=10% Similarity=0.065 Sum_probs=172.5
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHH
Q 020136 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV 146 (330)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~ 146 (330)
++..+-+....+.++...+.+++...+++| +|+++.|.++.+..+..........|++++. .|. +|. .++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SHL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CHH
Confidence 567777888899999999999999999999 9999999999999997766444455666653 222 121 123
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 020136 147 YLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAV 225 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~ 225 (330)
.....+++..+.+++..++ +.+++++..++ ++++. ...+++..+..++..+.....+.++..++.+......++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3455566666667666654 44555555555 44443 346777788888888888899999999999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020136 226 ALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI 305 (330)
Q Consensus 226 ~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 305 (330)
..++..++...+.. .++|..+..++..++..+..+...+.. +++.++++ . .+.+..|++++++.|.....+...
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~---~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL-H---FSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc-e---ecHHHHHHHHhhhHHHHHHHHHHH
Confidence 88877777665554 468999999999999988776543332 22222221 1 124567899999999999999988
Q ss_pred HHHHHHHHHhhcC-CcHHHhhhc
Q 020136 306 WYFMALILFAGYL-KNAKLSVAG 327 (330)
Q Consensus 306 ~~~~~~~~~~~~l-g~~~laa~~ 327 (330)
....+...+++++ |+.++...+
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~ 247 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYN 247 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHH
Confidence 8888888876554 666655443
No 31
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=114.98 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST--LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (330)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~--~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 141 (330)
++.+++++++++|..++..++.....+-....|.+++ .++++.++...+.... +.+..+++.++++.+++.+|++|.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 8888999999999999999999999999999999885 5788888888874444 667889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
+++|.....+...+...+...... +.+.+.+...|..|+++.+...+..++++++....+.+.+..+..+|.|..+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999998888887764 5577888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
++++.+. ++.+++...+-+.+++|..|.|++...+..+....+.+...+
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~ 451 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR 451 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence 9999988 888888888888889999999999999976666666555543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.26 E-value=2.3e-08 Score=86.41 Aligned_cols=221 Identities=18% Similarity=0.168 Sum_probs=148.9
Q ss_pred HHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 020136 86 PLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMF 164 (330)
Q Consensus 86 l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..+++-..+++| +|+++.|.|+....+...+......|+.+.. .+ ..++|+++.++..+..+....+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSL----VR-SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888899 9999999999999997766443345554443 33 23455666666666665544443333332
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 020136 165 MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG 244 (330)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G 244 (330)
+ ...+..++ .+++ ...++.+..+..++..+....++.+++.+|.+......++..++.+.+..++... +.+
T Consensus 77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11122233 3332 3345667778888899999999999999999999999999998875555444443 247
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcHHH
Q 020136 245 LVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY-LKNAKL 323 (330)
Q Consensus 245 ~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-lg~~~l 323 (330)
..+..++..++..+..+...++.++ + .+... ..+.. +.++.+.|.....+..+........+++. +|..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRR-K--LRLSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-c--cCCCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 8889999999988877765543321 1 11111 22222 37899999999999999998888888888 888777
Q ss_pred hhhcc
Q 020136 324 SVAGL 328 (330)
Q Consensus 324 aa~~i 328 (330)
+..++
T Consensus 220 g~y~~ 224 (251)
T PF13440_consen 220 GIYSV 224 (251)
T ss_pred HHHHH
Confidence 65543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.15 E-value=2.2e-08 Score=95.27 Aligned_cols=244 Identities=15% Similarity=0.118 Sum_probs=168.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHH
Q 020136 67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG 145 (330)
Q Consensus 67 ~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~ 145 (330)
.+++.+-+.-....++...+..++-...++| +|+++.|.++.+..+...+......|+..+....++++..++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3678888889999999999999999999999 999999999999999887755556888888888888876655555555
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 020136 146 VY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAA 224 (330)
Q Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 224 (330)
.. ....+....+.+++.........+. ++ .....+++..++.+.........+++|+.++.+......+
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV 154 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence 44 4444444444333333332222222 22 2344567889999999999999999999999999998844
Q ss_pred HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 020136 225 VALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304 (330)
Q Consensus 225 ~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 304 (330)
.. .+-+.....+.. ....+..++...+.........++.++++.+..+..+ +...+.+++.++.++|........
T Consensus 155 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~~ 229 (480)
T COG2244 155 SS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLLN 229 (480)
T ss_pred HH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHHH
Confidence 44 222222222222 2455666777777777666665555422222222222 224678999999999999999999
Q ss_pred HHHHHHHHHHhhcC-CcHHHhh
Q 020136 305 IWYFMALILFAGYL-KNAKLSV 325 (330)
Q Consensus 305 ~~~~~~~~~~~~~l-g~~~laa 325 (330)
.....+...+++.+ |+.++..
T Consensus 230 ~l~~~~D~~~i~~~l~~~~vG~ 251 (480)
T COG2244 230 FLFTNIDTLLLGLFLGPAQVGI 251 (480)
T ss_pred HHHHHHHHHHHHHHhhhhHhee
Confidence 99998888876655 5555443
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.93 E-value=5.2e-06 Score=72.05 Aligned_cols=250 Identities=12% Similarity=0.030 Sum_probs=156.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCC--h-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIS--T-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (330)
Q Consensus 66 ~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g--~-~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 142 (330)
..++++++-+|..++.+...+...+-+.-+++.. + +.+|+|+++..+.-.+ .++...+-+.... ++.++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchhh
Confidence 3478999999999999999999888888787632 3 3499999999985444 4455555554433 3333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 020136 143 MMGVYLQRSWIILITTALMLMFMYI--FAQQILS-LIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (330)
+. +.+......+.+...+..++.+ +...++. +++.++++.+.+...+.++.+..++.++....+|++.=.+++...
T Consensus 83 rr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 22 2222222222222222222222 3344443 568899999999999999999999999999999998877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchH---HHHHHHHHHHHHHHHH-HHHHh-cCCCCCCCCCCHHhHHHHHHHHHHH
Q 020136 220 AVIAAVALLLHTILSWLLILKLGLGLVGA---AVALNASWWFIDITRL-LYIFS-GACGPTWSGFSWKAFHSLWSFVRLS 294 (330)
Q Consensus 220 ~~~~i~~~~~~i~l~~~li~~~~~G~~Ga---a~a~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (330)
...++...+..+++..+++...--....+ .++...+..+.+-+.. -|++. ....+...+........+++++++.
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 77777766666665555553110011111 1222333322222211 12211 2222222222333445788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcHH
Q 020136 295 LASAVMLCVEIWYFMALILFAGY-LKNAK 322 (330)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~-lg~~~ 322 (330)
+|.+......+.+--+.+.+.+| +|..+
T Consensus 242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~ 270 (345)
T PF07260_consen 242 WPLALVLATQRISRPLVNLFVSRDLSGSQ 270 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999 65543
No 35
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.92 E-value=6.6e-08 Score=76.57 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 190 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
+++++++.++.++....+..+++.||++..++.++++.++|+++++++++. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999877 899999999999999999999888877
Q ss_pred c
Q 020136 270 G 270 (330)
Q Consensus 270 ~ 270 (330)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.85 E-value=9.5e-07 Score=84.46 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=164.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc---
Q 020136 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL--- 141 (330)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~---~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~--- 141 (330)
++.+++........+.-.+.+--|+.++.. ...++.|.|++++..-++++-.+...+-...-...++....++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678888999999999999999999999998 45678999999999988888889999999998899988765433
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136 142 ------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (330)
Q Consensus 142 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 214 (330)
++..+.+...+++...+++++.+. -..++.++.+++++......+...+++++..+|+++++.+.-++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 335566777777777777766643 5577888888876666566678889999999999999999999999887
Q ss_pred chhHHHHHH---HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 215 KIMVLAVIA---AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 215 ~~~~~~~~~---i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
+.+.....+ ++..++.+..+++++.. ++|..|..+|.++......+...+++++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554443 44456667788888886 7999999999999999999999888877
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=7.9e-05 Score=67.75 Aligned_cols=196 Identities=14% Similarity=0.073 Sum_probs=145.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHH
Q 020136 72 YLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (330)
Q Consensus 72 ~~~~P~~~~~~~~~l~~~id~~~i~~---~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~ 148 (330)
+...-..-..+.-.+.+--|..++.. +.-.+.|.|.+.+..-++++-.+...+--..-...+|....++.|+.++..
T Consensus 243 ~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~ 322 (530)
T KOG2864|consen 243 KLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAV 322 (530)
T ss_pred HHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHH
Confidence 33333344456666667778888874 445577888888887777777788888888888889988887777766554
Q ss_pred ---HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH---H
Q 020136 149 ---QRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA---V 221 (330)
Q Consensus 149 ---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~ 221 (330)
...+.+...++++... ..-.+..++.+++++......+...++++++.+|+.+++.+.-+++.+.++.+... +
T Consensus 323 ~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~ 402 (530)
T KOG2864|consen 323 DVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNK 402 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhccc
Confidence 4445555555544443 24466778888877766555667889999999999999999999999987776554 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
..++..++.++++|+++-+ +|..|.-+|.++...+.-+....++++
T Consensus 403 ~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 403 FMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred chhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455668888999999998 677999999999888888877777765
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.65 E-value=0.0003 Score=61.20 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhh
Q 020136 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAY 136 (330)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~ 136 (330)
++..|++++.+.|..++.+...+...+|+.++++ .|++++|.|+.+.++...+ ..+...+.+...|..++.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 6778999999999999999999999999999999 9999999999999998776 5578889999999998853
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.53 E-value=0.015 Score=49.88 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhh
Q 020136 69 KLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135 (330)
Q Consensus 69 ~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~ 135 (330)
+.++.+.|..+..+...+...+|..+++. +|++++|.|+.+.++...+...+..++++...|..+|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999 99999999999999977664368899999999988873
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.44 E-value=2 Score=39.04 Aligned_cols=136 Identities=10% Similarity=0.138 Sum_probs=93.3
Q ss_pred HHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 020136 119 GAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLF 198 (330)
Q Consensus 119 ~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~ 198 (330)
.+..|+....+..+|...=+++.+++...+.-...+....+..+.. ++.....+. ...|=........
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~-----si~yk~l~~~~FV 142 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQY-----SIVYKILACALFV 142 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCch-----hHHHHHHHHHHHH
Confidence 3556777777788888777777777665554444333333322221 111111222 1222334455666
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 199 AYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 199 ~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
.++.......++.+.+|.+...+.-.++.++.+.+..++-.. ++.|.-++..++..+.......++.|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 677777888899999999999999999999998888776654 89999999999999999888888877
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=72.75 E-value=79 Score=29.15 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=66.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (330)
++++....++++..-..-+-...++ ++++++.++.+++-++.. .+...+-.++.-+......+-.+.--..+-+.
T Consensus 318 ~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i 393 (467)
T COG4267 318 NLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRI 393 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455556666665555555555554 466888999998765432 33345555555555444444444445566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCccchHHHHHHHHHHH
Q 020136 219 LAVIAAVALLLHTILSWLLILK-LGLGLVGAAVALNASWWF 258 (330)
Q Consensus 219 ~~~~~i~~~~~~i~l~~~li~~-~~~G~~Gaa~a~~i~~~~ 258 (330)
.+..+..-...|-++.+++... .++--.|..+|..++-.+
T Consensus 394 ~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv 434 (467)
T COG4267 394 ALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV 434 (467)
T ss_pred hhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence 7777777778888888887753 223333444444444333
No 42
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=67.74 E-value=1.5e+02 Score=30.28 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=10.1
Q ss_pred HHHHHhhhHHhHHHhhhcCC
Q 020136 120 AMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 120 ~~~~l~~a~~~~~s~~~g~~ 139 (330)
+...++.-....++..+|.+
T Consensus 213 lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcH
Confidence 33444444455566665533
No 43
>PRK03612 spermidine synthase; Provisional
Probab=57.35 E-value=1.9e+02 Score=28.05 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 020136 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYI 267 (330)
Q Consensus 222 ~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 267 (330)
-++.+.+-.+...+++++. +|..+..+....-++...++..+..
T Consensus 154 ntlGa~~G~l~~~~vLlp~--lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 154 DYLGALVGGLAFPFLLLPR--LGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HhHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555666777766 6887777766666666665444443
No 44
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=50.52 E-value=78 Score=26.71 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH---------HHHHHHHHHHHHHHHHHHHH
Q 020136 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE---------ISNAAGTFATWMIPQLFAYA 201 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~~ 201 (330)
..+.+..++...+++-.++++++.+..++..+++.+.- ..+....|+++++.++|...
T Consensus 146 ~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 146 RQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 33333344333333333333445556676666653311 12234566666666666654
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=49.17 E-value=54 Score=29.40 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CCh
Q 020136 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST 100 (330)
Q Consensus 66 ~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~ 100 (330)
..++++++..|.+.....+.+...+-+.+++| +|.
T Consensus 233 tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 233 TLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34789999999999999999999999999999 653
No 46
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=47.10 E-value=76 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 020136 58 DFSREFLKEGKKLWYLAGPAIFMTICQYPL 87 (330)
Q Consensus 58 ~~~~~~~~~~~~il~~~~P~~~~~~~~~l~ 87 (330)
..++.+.+..|.++.+.+|..+.++.+++.
T Consensus 233 ~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~I 262 (402)
T PF02487_consen 233 LSFKEKLKRLKPLLWYMIPLFLVYFAEYFI 262 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888999999999999999887
No 47
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=44.54 E-value=1e+02 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 244 GLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 244 G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
++.|...++.+++.+.++++..|.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 45677888889998888888777766
No 48
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=42.22 E-value=1.2e+02 Score=23.00 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHhhc
Q 020136 70 LWYLAGPAIFMTICQYPLGAITQVFSGH 97 (330)
Q Consensus 70 il~~~~P~~~~~~~~~l~~~id~~~i~~ 97 (330)
+.+-++++.+..++..+...++.++.-+
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~ 78 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKK 78 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777777666
No 49
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.95 E-value=37 Score=25.73 Aligned_cols=25 Identities=16% Similarity=-0.121 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136 247 GAAVALNASWWFIDITRLLYIFSGA 271 (330)
Q Consensus 247 Gaa~a~~i~~~~~~~~~~~~~~~~~ 271 (330)
|..++.+++-+...+++.|+++|++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444455533
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=39.82 E-value=1.3e+02 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=24.7
Q ss_pred hhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 020136 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTA 159 (330)
Q Consensus 126 ~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (330)
...+..+-..+.+||.+++++.-+++..++.+..
T Consensus 38 i~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 38 IVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred heechhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 3334566677889999999998888877664433
No 51
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=37.80 E-value=56 Score=33.86 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=12.8
Q ss_pred HhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 020136 129 ETLCGQAYGAGQLDMMGVYLQRSWIILITTALM 161 (330)
Q Consensus 129 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+++...|.+|..-....-...+-+.++++++
T Consensus 986 sSvivArkG~gdMAVan~iGSNIFnIllgLGlP 1018 (1096)
T TIGR00927 986 TSVIVARKGLGDMAVSSSVGSNIFDITVGLPVP 1018 (1096)
T ss_pred HHHHHHHccCCcceeeeccccchheeeeeccHH
Confidence 333444445555433333333333333333433
No 52
>PF14184 YrvL: Regulatory protein YrvL
Probab=35.33 E-value=2.1e+02 Score=22.06 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 020136 152 WIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLH 230 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~ 230 (330)
...+....++.+...+....+++++|.+=+ .....--.+....++.|+..+..++...+.-.+-++.... .....+.
T Consensus 8 i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~id 85 (132)
T PF14184_consen 8 IIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFIID 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHHH
Confidence 334444444444555566778888876533 2222333334455677777777777666655533333332 3344677
Q ss_pred HHHHHHHHHhcCCccchHHHHHH
Q 020136 231 TILSWLLILKLGLGLVGAAVALN 253 (330)
Q Consensus 231 i~l~~~li~~~~~G~~Gaa~a~~ 253 (330)
...+|..++.-+.=+.+..+.+.
T Consensus 86 ~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 86 FLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHhcceeeCcH
Confidence 77788777765544555554443
No 53
>PRK10160 taurine transporter subunit; Provisional
Probab=32.90 E-value=3.3e+02 Score=23.72 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 020136 290 FVRLSLASAVML 301 (330)
Q Consensus 290 ~l~~~~p~~~~~ 301 (330)
.+..+.|..+..
T Consensus 191 ~lP~alp~i~~~ 202 (275)
T PRK10160 191 ILPGALPEILTG 202 (275)
T ss_pred hhHhhHHHHHHH
Confidence 334444444433
No 54
>PRK10739 putative antibiotic transporter; Provisional
Probab=29.65 E-value=3.3e+02 Score=22.60 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=37.7
Q ss_pred HHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 020136 120 AMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAA 186 (330)
Q Consensus 120 ~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 186 (330)
+...+++. |..-..-...++++.++..++....+.+ ++.+..++.+.+++.|+-+-+..+.+
T Consensus 14 iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~~---ill~f~~~G~~iL~~fGIsl~afrIA 75 (197)
T PRK10739 14 IMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIALL---VMLVFLFAGEKILAFLNLRTETVSIS 75 (197)
T ss_pred HHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44555555 6666665566666666666665544432 22244567789999999876554443
No 55
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=29.50 E-value=5.5e+02 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHH
Q 020136 72 YLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSV 112 (330)
Q Consensus 72 ~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i 112 (330)
+-+.-.++.+++..+.+++-+.++=| ++++.+|..++=..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeL 46 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLEL 46 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHH
Confidence 44556677888888888877777666 999988877554444
No 56
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=27.84 E-value=3.3e+02 Score=25.17 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHH
Q 020136 73 LAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS 151 (330)
Q Consensus 73 ~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~ 151 (330)
+|.-++.+++.+.+.+.+-+.+.-+ +|+.+++.-+.+..+..++ +. -+.-+.+++-..+++.......
T Consensus 59 ig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilv---Fa--------EVlPKt~Aa~~perva~~~s~~ 127 (423)
T COG4536 59 IGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILV---FA--------EVLPKTIAALYPERVALPSSFI 127 (423)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH---HH--------HhcchHHhhhChhhhhhhhhHH
Confidence 3556667777777776666655555 7877655444443332211 11 3344455566677776666665
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCCC
Q 020136 152 WIILITTALMLM-FMYIFAQQILSLIGQT 179 (330)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 179 (330)
+....-+.-|+. ++-++...++++++.+
T Consensus 128 l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 128 LAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 555555555554 4566788888888654
No 57
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=25.88 E-value=2.5e+02 Score=25.57 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 020136 54 NGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGA 89 (330)
Q Consensus 54 ~~~~~~~~~~~~~~~~il~~~~P~~~~~~~~~l~~~ 89 (330)
...+...+...+.+|.++++.+|...-++.++..+.
T Consensus 233 ~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQ 268 (409)
T KOG3880|consen 233 PSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQ 268 (409)
T ss_pred chhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666778889999999999999988877654
No 58
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.69 E-value=6.2e+02 Score=23.49 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHH----HHHHHhcCCccchHHHHHHHHHHHHHHH
Q 020136 228 LLHTILS----WLLILKLGLGLVGAAVALNASWWFIDIT 262 (330)
Q Consensus 228 ~~~i~l~----~~li~~~~~G~~Gaa~a~~i~~~~~~~~ 262 (330)
++|+..+ .+++.. +|-.|.++||..--++..++
T Consensus 68 LvNilasalaT~~~irl--~Gd~GvaIAt~~mT~vilvF 104 (423)
T COG4536 68 LVNILASALATILGIRL--YGDAGVAIATGVLTFVILVF 104 (423)
T ss_pred HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHH
Confidence 5555433 444444 79999999988766665553
No 59
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=22.58 E-value=4.5e+02 Score=21.75 Aligned_cols=15 Identities=0% Similarity=-0.228 Sum_probs=6.6
Q ss_pred HHHHHHHhcCCccch
Q 020136 233 LSWLLILKLGLGLVG 247 (330)
Q Consensus 233 l~~~li~~~~~G~~G 247 (330)
+-++++.+++.|-..
T Consensus 69 ~~pl~~~~fG~g~~~ 83 (202)
T TIGR01183 69 WLPIALAAFQDAQPA 83 (202)
T ss_pred HHHHHHHHHhcCchH
Confidence 333444454455433
No 60
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=21.95 E-value=6.3e+02 Score=23.28 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HcCCC
Q 020136 140 QLDMMGVYLQRSWIILITTALMLMF-MYIFAQQILS-LIGQT 179 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~ 179 (330)
++++.+++.+.+...+.+...+..+ +....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5578999999999999888887775 4556677766 44433
No 61
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=21.57 E-value=6.8e+02 Score=23.51 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=30.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHH----hhcCChhHH--HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136 68 KKLWYLAGPAIFMTICQYPLGAITQVF----SGHISTLAL--AAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG 139 (330)
Q Consensus 68 ~~il~~~~P~~~~~~~~~l~~~id~~~----i~~~g~~~~--aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~ 139 (330)
|+++.+.+-. ......++..|+.+ .+...+.+. ..++..+++ . .+...+.....|.+-+..|.+
T Consensus 220 ~~fw~~~l~v---~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~-~----v~~E~~~m~~~p~li~rig~k 289 (412)
T PF01306_consen 220 RNFWFFVLFV---IGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSV-Q----VFLEALMMFFSPWLINRIGAK 289 (412)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHH-HH
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHH-H----HHHHHHHHHHHHHHHHhcChH
Confidence 4454444332 33445566666543 333444433 334544444 1 133445555667777776643
No 62
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=21.23 E-value=5.9e+02 Score=22.65 Aligned_cols=19 Identities=5% Similarity=0.050 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 020136 215 KIMVLAVIAAVALLLHTIL 233 (330)
Q Consensus 215 ~~~~~~~~~i~~~~~~i~l 233 (330)
....++...+++.+....+
T Consensus 169 ~~l~~l~~~~~~~~~~~g~ 187 (333)
T PF03176_consen 169 AALLPLLPVLLSIVWTLGL 187 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 63
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=20.88 E-value=5.4e+02 Score=22.09 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 020136 217 MVLAVIAAVALLLHTILSWLLIL 239 (330)
Q Consensus 217 ~~~~~~~i~~~~~~i~l~~~li~ 239 (330)
|....-.+++.+.-.+..+.+.+
T Consensus 192 r~~~~Ga~~a~v~w~~~~~~f~~ 214 (259)
T TIGR00765 192 RHAFVGAFFAAVLFELAKWLFTF 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544
No 64
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=20.30 E-value=5.1e+02 Score=21.51 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 020136 120 AMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185 (330)
Q Consensus 120 ~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (330)
+...+++. |.....-+..++++.++..++....+.+ ++.+..+..+.+++.|+-+-+....
T Consensus 17 iinPig~i--pvfl~lt~~~~~~~r~~ia~~~~l~a~~---ill~f~~~G~~iL~~fgIsl~afrI 77 (201)
T TIGR00427 17 IINPIGNI--PIFISLTEYYTAAERNKIAKKANISSFI---ILLIFLVFGDTILKLFGISIDAFRI 77 (201)
T ss_pred HhCcchHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555555 6666665555666666666655543332 2223455778899999877554443
Done!