Query 020136
Match_columns 330
No_of_seqs 232 out of 2105
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:19:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 4E-30 1.4E-34 241.1 20.5 268 61-329 5-279 (460)
2 3mkt_A Multi antimicrobial ext 99.9 7.3E-24 2.5E-28 198.5 19.7 205 64-269 234-445 (460)
3 2jwa_A Receptor tyrosine-prote 36.0 53 0.0018 19.1 3.6 14 258-271 26-39 (44)
4 2ks1_B Epidermal growth factor 34.2 70 0.0024 18.6 4.6 11 259-269 27-37 (44)
5 2k1k_A Ephrin type-A receptor 27.4 62 0.0021 18.1 2.9 15 246-260 14-28 (38)
6 1pw4_A Glycerol-3-phosphate tr 27.2 3E+02 0.01 23.7 20.4 31 67-97 27-57 (451)
7 3cx5_C Cytochrome B-C1 complex 16.9 5.3E+02 0.018 22.7 9.7 73 190-262 81-155 (385)
8 4ev6_A Magnesium transport pro 10.9 4.8E+02 0.016 22.2 6.2 14 256-269 322-335 (339)
9 1pw4_A Glycerol-3-phosphate tr 10.1 7.8E+02 0.027 20.9 20.4 22 243-264 410-431 (451)
10 2jek_A RV1873; structural geno 8.5 4.8E+02 0.016 19.4 4.3 91 132-223 53-143 (145)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.97 E-value=4e-30 Score=241.09 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (330)
Q Consensus 61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~ 140 (330)
...++..|++++.+.|.+++++...+.+.+|+.+++++|++++|+++++.++.... ..+..+++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44567889999999999999999999999999999999999999999999996654 56788999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136 141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (330)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (330)
+++.++.+++++.+..++++++++++++.++++.+++.+++..+.+..|+++++++.++..+....++++|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999877777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCHHhHHHHHHHHHH
Q 020136 221 VIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRL 293 (330)
Q Consensus 221 ~~~i~~~~~~i~l~~~li~~-~---~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 293 (330)
+.++++.++|+++++++++. + ++|+.|+++|+.+++++..++..+++++++...+ +.++.+.+++.+|++++.
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 4 6999999999999999999988888876443221 233334455678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136 294 SLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS 329 (330)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~ 329 (330)
++|..++.+.++..+.+.+.+++++|+.++++++++
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~ 279 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVA 279 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=7.3e-24 Score=198.45 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (330)
Q Consensus 64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 143 (330)
++..|++++++.|.+++++...+...+|+.+++++|++++|+|+++.++.+.. ..+..+++++..|.+++++|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34558899999999999999999999999999999999999999999997766 56889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (330)
.++..+.+..+...++++.+++ +++++++..++..|+++.+.+..++++++++.++.+++....+++++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999998865 668999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136 223 AAVAL-LLHTILSWLLILK----LG-LGLVGAAVALNASWWFIDITRLLYIFS 269 (330)
Q Consensus 223 ~i~~~-~~~i~l~~~li~~----~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~ 269 (330)
++++. ++++++++++++. ++ +|+.|+|+|+.+++++..++..+.+++
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999987 67 999999999999999998877665554
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=35.97 E-value=53 Score=19.08 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhcC
Q 020136 258 FIDITRLLYIFSGA 271 (330)
Q Consensus 258 ~~~~~~~~~~~~~~ 271 (330)
+..+....|++|++
T Consensus 26 i~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 26 VLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHhheehhh
Confidence 33344444555543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.23 E-value=70 Score=18.55 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 020136 259 IDITRLLYIFS 269 (330)
Q Consensus 259 ~~~~~~~~~~~ 269 (330)
..+...+++++
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33333334444
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.37 E-value=62 Score=18.05 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=6.3
Q ss_pred chHHHHHHHHHHHHH
Q 020136 246 VGAAVALNASWWFID 260 (330)
Q Consensus 246 ~Gaa~a~~i~~~~~~ 260 (330)
.|+.++.+.+-.+..
T Consensus 14 AGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 14 VAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 344444444443333
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=27.23 E-value=3e+02 Score=23.72 Aligned_cols=31 Identities=0% Similarity=-0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc
Q 020136 67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH 97 (330)
Q Consensus 67 ~~~il~~~~P~~~~~~~~~l~~~id~~~i~~ 97 (330)
++.++....-.++..............+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ 57 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444444
No 7
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=16.94 E-value=5.3e+02 Score=22.68 Aligned_cols=73 Identities=14% Similarity=-0.046 Sum_probs=47.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 020136 190 ATWMIPQLF-AYALNFPMVKFLQ-AQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDIT 262 (330)
Q Consensus 190 l~i~~~~~~-~~~~~~~~~~~l~-~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~ 262 (330)
+.....+.. ......+.++++. +.++++...+..-+...+-....-++-+.+.||-.+-|-||++++.++++-
T Consensus 81 ~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatViTnLlsaIP 155 (385)
T 3cx5_C 81 LHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHhh
Confidence 333444443 3344556677666 445567777777666654444555556666799999999999999877654
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.86 E-value=4.8e+02 Score=22.18 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 020136 256 WWFIDITRLLYIFS 269 (330)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (330)
.++.+++.+++++|
T Consensus 322 m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 322 MVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445555554
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=10.07 E-value=7.8e+02 Score=20.90 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.9
Q ss_pred CccchHHHHHHHHHHHHHHHHH
Q 020136 243 LGLVGAAVALNASWWFIDITRL 264 (330)
Q Consensus 243 ~G~~Gaa~a~~i~~~~~~~~~~ 264 (330)
.|.....+...+...+..++..
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444433
No 10
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=8.45 E-value=4.8e+02 Score=19.36 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 132 CGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQ 211 (330)
Q Consensus 132 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 211 (330)
.++.||-.+.++++.++..-+.-.=+.-+.-.++-.-....-.+||. ++..+.-...-..-...---..+..++..++.
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~ll~~~~~sa~~IfG~-~D~~KlrSsMTLFa~a~~~~~~F~~vL~~~f~ 131 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKYYG 131 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHHST
T ss_pred hhhHhccCCHHHHHHHHcChHHHHHHHHHHHHHHhccCCCHHHHcCC-hhHHHHHhHHHHHHHcCCCchHHHHHHHHHcC
Q ss_pred hcCchhHHHHHH
Q 020136 212 AQSKIMVLAVIA 223 (330)
Q Consensus 212 ~~g~~~~~~~~~ 223 (330)
|..|.+..-...
T Consensus 132 G~~D~~Tl~~L~ 143 (145)
T 2jek_A 132 GGEDRRTVALLA 143 (145)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCCHHHHHHhc
Done!