Query 020136
Match_columns 330
No_of_seqs 232 out of 2105
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 12:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020136.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020136hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 74.0 21 0.0015 29.1 18.9 26 243-268 407-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 14.6 2.4E+02 0.017 21.3 18.0 11 243-253 376-386 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 8.2 4.3E+02 0.031 20.3 16.7 10 98-107 56-65 (447)
4 d2jeka1 a.255.1.1 (A:6-145) Hy 6.5 2.5E+02 0.018 19.0 3.7 96 122-222 41-137 (140)
5 d1q90b_ f.21.1.2 (B:) Cytochro 6.1 4.7E+02 0.034 18.9 10.7 68 195-262 88-156 (212)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.1 5.9E+02 0.043 20.0 9.4 30 59-88 31-61 (405)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 5.3 5.8E+02 0.042 19.0 11.3 67 196-262 88-155 (261)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.6 2.4E+02 0.017 15.6 2.1 26 132-157 2-27 (53)
9 d1fftc_ f.25.1.1 (C:) Cytochro 3.0 3E+02 0.022 19.1 2.2 29 124-152 60-88 (185)
10 d1oeda_ f.36.1.1 (A:) Acetylch 2.6 6.2E+02 0.045 17.7 3.8 27 148-174 196-222 (227)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=73.97 E-value=21 Score=29.13 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=13.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH
Q 020136 243 LGLVGAAVALNASWWFIDITRLLYIF 268 (330)
Q Consensus 243 ~G~~Gaa~a~~i~~~~~~~~~~~~~~ 268 (330)
.|..+..+.......+..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655555555555554444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.65 E-value=2.4e+02 Score=21.33 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=4.6
Q ss_pred CccchHHHHHH
Q 020136 243 LGLVGAAVALN 253 (330)
Q Consensus 243 ~G~~Gaa~a~~ 253 (330)
+|...+.+...
T Consensus 376 ~g~~~~~~~~~ 386 (417)
T d1pv7a_ 376 IGFQGAYLVLG 386 (417)
T ss_dssp HCHHHHHHHHH
T ss_pred HCHHHHHHHHH
Confidence 35444443333
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.24 E-value=4.3e+02 Score=20.28 Aligned_cols=10 Identities=20% Similarity=-0.047 Sum_probs=4.4
Q ss_pred CChhHHHHHH
Q 020136 98 ISTLALAAVS 107 (330)
Q Consensus 98 ~g~~~~aa~~ 107 (330)
+++.+++...
T Consensus 56 ~s~~~~g~~~ 65 (447)
T d1pw4a_ 56 FSRGDLGFAL 65 (447)
T ss_dssp TCSSCHHHHH
T ss_pred cCHHHHHHHH
Confidence 3344554433
No 4
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.47 E-value=2.5e+02 Score=19.03 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred HHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH-HH
Q 020136 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLF-AY 200 (330)
Q Consensus 122 ~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~-~~ 200 (330)
.|+|. +-.++.||-++.++++.++..-..-.=..-+.-.++-.-......+||.. +..+. ..-+.......+ -.
T Consensus 41 ~GLG~---S~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~ll~~~~~s~~~IfG~~-D~lKl-rSsmTLF~~a~~~~~ 115 (140)
T d2jeka1 41 RGLGS---SPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGLVNQVQGRSIEEIFGPP-DDLKL-CSSMTLFARATDANQ 115 (140)
T ss_dssp TTSCC---SHHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHHHHHCCSCCHHHHSCTT-HHHHH-HHHHHHHHHHCSCCH
T ss_pred cccCc---CHHHHHhccCCHHHHHHHHhChHhHHHHHHHHHHHHHccCCCHHHHCCCh-hHHHH-HhHHHHHHHhCCCch
Confidence 34555 34789999999999999887654322222221122222334455667653 33332 222222222222 23
Q ss_pred HHHHHHHHHHHhcCchhHHHHH
Q 020136 201 ALNFPMVKFLQAQSKIMVLAVI 222 (330)
Q Consensus 201 ~~~~~~~~~l~~~g~~~~~~~~ 222 (330)
.+..++..++.|..|.+..-..
T Consensus 116 ~F~~~L~~~f~G~~d~~Tl~~L 137 (140)
T d2jeka1 116 DFVALLAKYYGGGEDRRTVALL 137 (140)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHH
Confidence 5777888899999888876543
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.12 E-value=4.7e+02 Score=18.85 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 020136 195 PQLFAYALNFPMVKFLQA-QSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDIT 262 (330)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~ 262 (330)
-.+.+...-...+.++.| .+++|...+..-+...+.....-+.-+.+.+|-.+-|-++++.+....+-
T Consensus 88 s~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~iP 156 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIP 156 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGST
T ss_pred hHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence 344444555666676654 57778888887777766566666666777899999999999999876653
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.11 E-value=5.9e+02 Score=20.03 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHH-HHhHHHHHHHHHhHHH
Q 020136 59 FSREFLKEGKKLWY-LAGPAIFMTICQYPLG 88 (330)
Q Consensus 59 ~~~~~~~~~~~il~-~~~P~~~~~~~~~l~~ 88 (330)
..+...+.+-+++| .-.|.++..+...+.+
T Consensus 31 ~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~ 61 (405)
T d2nwwa1 31 YVKPFGDLFVRLLKMLVMPIVFASLVVGAAS 61 (405)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777887 5566666666555543
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.28 E-value=5.8e+02 Score=18.98 Aligned_cols=67 Identities=15% Similarity=-0.010 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHH
Q 020136 196 QLFAYALNFPMVKFLQA-QSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDIT 262 (330)
Q Consensus 196 ~~~~~~~~~~~~~~l~~-~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~ 262 (330)
.+.........++++.+ .+++|...+..-+...+.+...-+.-+.+.||-.+-|-++++++....+-
T Consensus 88 ~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 88 FFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 34444555666776665 45678877877776655555555556666799999999999999877665
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.64 E-value=2.4e+02 Score=15.55 Aligned_cols=26 Identities=4% Similarity=-0.030 Sum_probs=14.7
Q ss_pred HHhhhcCCCcchHHHHHHHHHHHHHH
Q 020136 132 CGQAYGAGQLDMMGVYLQRSWIILIT 157 (330)
Q Consensus 132 ~s~~~g~~~~~~~~~~~~~~~~~~~~ 157 (330)
.++.+|.+-.+-++..+..+..++..
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a 27 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAV 27 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 45566666556666666655544433
No 9
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=3e+02 Score=19.14 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=15.1
Q ss_pred HhhhHHhHHHhhhcCCCcchHHHHHHHHH
Q 020136 124 MGSALETLCGQAYGAGQLDMMGVYLQRSW 152 (330)
Q Consensus 124 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~ 152 (330)
.++.+.....++..++|+++.+..+..+.
T Consensus 60 ~SS~~~~~a~~~~~~~~~~~~~~~L~~t~ 88 (185)
T d1fftc_ 60 FSSITYGMAAIAMYKNNKSQVISWLALTW 88 (185)
T ss_dssp GGTTTTTSGGGTTTTCCGGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455556667766655554333
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.62 E-value=6.2e+02 Score=17.70 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136 148 LQRSWIILITTALMLMFMYIFAQQILS 174 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (330)
+-+.+.+...+.+++..+.+|...+.+
T Consensus 196 iDRi~~~~F~l~~ii~~i~if~~~~~~ 222 (227)
T d1oeda_ 196 IDHILLCVFMLICIIGTVSVFAGRLIE 222 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333334445555443
Done!