BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020137
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 54 PQNLKSTALKHIAGSDNDVTFRIKDFDRDHASRLASDYITAIADELKDDPL--VVSVLDG 111
P L A+ +G+ + DF R+ A ++ +DY+ + ++D + V + DG
Sbjct: 177 PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI---NPFEEDVVKEVXDITDG 233
Query: 112 NTLKLFLE 119
N + +FLE
Sbjct: 234 NGVDVFLE 241
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 54 PQNLKSTALKHIAGSDNDVTFRIKDFDRDHASRLASDYITAIADELKDDPL--VVSVLDG 111
P L A+ +G+ + DF R+ A ++ +DY+ + ++D + V + DG
Sbjct: 178 PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI---NPFEEDVVKEVXDITDG 234
Query: 112 NTLKLFLE 119
N + +FLE
Sbjct: 235 NGVDVFLE 242
>pdb|2YFA|A Chain A, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Malate
pdb|2YFA|B Chain B, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Malate
pdb|2YFB|A Chain A, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Succinate
pdb|2YFB|B Chain B, X-Ray Structure Of Mcps Ligand Binding Domain In Complex
With Succinate
Length = 258
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 258 IRGFLEKNWKDIGLPPSEANEAVVLLY-DAVFADTDNSKNVVETED 302
+RG++ +N S ANE L DA ADTDN K + +ED
Sbjct: 161 VRGYIAEN--------SSANEQAALRQLDAALADTDNLKRQLPSED 198
>pdb|2ISC|A Chain A, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|B Chain B, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|C Chain C, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|D Chain D, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|E Chain E, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|F Chain F, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
Length = 239
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 66 AGSDNDVTFRIKDFDRDHASRLASDYITAIADELKDDPLVVSVLDGNTLKLFLEDEDDFA 125
AG+++ + RI+ D D+ + + D + A+ D K+ + V G + LF + + A
Sbjct: 109 AGTNSKIN-RIRFMDHDYPATASFDVVCALVDAAKELNIPAKVGKGFSTDLFYNPQTELA 167
Query: 126 MLAENL-FTDLDTEDKG 141
L F ++ E G
Sbjct: 168 QLMNKFHFLAVEMESAG 184
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 28.5 bits (62), Expect = 5.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKN 296
PP EA + V YD+ + TDN K+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEKD 85
>pdb|1Z33|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase
pdb|1Z34|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With
2-Fluoro-2'-Deoxyadenosine
pdb|1Z35|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With
2-Fluoroadenosine
pdb|1Z36|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Formycin A
pdb|1Z37|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Adenosine
pdb|1Z38|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Inosine
pdb|1Z39|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With 2'-Deoxyinosine
Length = 235
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 66 AGSDNDVTFRIKDFDRDHASRLASDYITAIADELKDDPLVVSVLDGNTLKLFLEDEDDFA 125
AG+++ + RI+ D D+ + + D + A+ D K+ + V G + LF + + A
Sbjct: 109 AGTNSKIN-RIRFMDHDYPATASFDVVCALVDAAKELNIPAKVGKGFSTDLFYNPQTELA 167
Query: 126 MLAENL-FTDLDTEDKG 141
L F ++ E G
Sbjct: 168 QLMNKFHFLAVEMESAG 184
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKN 296
PP EA + V YD+ + TDN K+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEKD 84
>pdb|2I4T|A Chain A, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
pdb|2I4T|B Chain B, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
pdb|2I4T|C Chain C, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
Length = 236
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 66 AGSDNDVTFRIKDFDRDHASRLASDYITAIADELKDDPLVVSVLDGNTLKLFLEDEDDFA 125
AG+++ + RI+ D D+ + + D + A+ D K+ + V G + LF + + A
Sbjct: 109 AGTNSKIN-RIRFMDHDYPATASFDVVCALVDAAKELNIPAKVGKGFSTDLFYNPQTELA 167
Query: 126 MLAENL-FTDLDTEDKG 141
L F ++ E G
Sbjct: 168 QLMNKFHFLAVEMESAG 184
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKN 296
PP EA + V YD+ + TDN K+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEKD 85
>pdb|1E1H|A Chain A, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase.
pdb|1E1H|C Chain C, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase
Length = 287
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 98 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 134
>pdb|3K3Q|B Chain B, Crystal Structure Of A Llama Antibody Complexed With The
C. Botulinum Neurotoxin Serotype A Catalytic Domain
Length = 252
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 63 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 99
>pdb|2ILP|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2ILP|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2IMA|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMA|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMB|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMB|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMC|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
pdb|2IMC|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
Length = 444
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 81 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 117
>pdb|4EL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134SC165S DOUBLE MUTANT
Length = 445
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 81 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 117
>pdb|4HEV|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
pdb|4HEV|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
Length = 441
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 77 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 113
>pdb|4EJ5|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA WILD-Type
Length = 445
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 81 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 117
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 81 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 117
>pdb|1XTF|A Chain A, Neurotoxin BontA E224Q Y366F MUTANT
pdb|1XTF|B Chain B, Neurotoxin BontA E224Q Y366F MUTANT
Length = 427
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 96
>pdb|1XTG|A Chain A, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 424
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 96
>pdb|2W2D|A Chain A, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|C Chain C, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 450
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 65 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 101
>pdb|3QIX|A Chain A, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIX|B Chain B, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIY|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-1
pdb|3QIZ|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-2
pdb|3QJ0|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-3
Length = 430
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|3DS9|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
pdb|3DSE|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
Length = 417
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|2ISE|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISE|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISG|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISG|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISH|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
pdb|2ISH|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
Length = 421
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 96
>pdb|3NF3|A Chain A, Crystal Structure Of BontA LC WITH JTH-Nb-7239 Peptide
Length = 425
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|3BOK|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A Apo-
Enzyme
pdb|3BON|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
Zn2+ Cofactor Bound
pdb|3BOO|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
An Inhibitory Peptide Bound
Length = 425
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|3DDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Snap-25 Peptide
pdb|3DDB|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Substrate Analog Peptide
pdb|3QW5|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrgf
pdb|3QW6|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rygc
pdb|3QW7|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrfc
pdb|3QW8|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Crgc
Length = 430
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|2G7K|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7K|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7N|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 96
>pdb|3BWI|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With An Acetate Ion Bound At The
Active Site
pdb|3C88|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgc
pdb|3C89|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgm
pdb|3C8A|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgl
pdb|3C8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgi
Length = 432
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 61 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 97
>pdb|2G7P|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7P|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 60 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 96
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 64 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 100
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 272 PPSEANEAVVLLYDAVFADTDNSKNVVETEDEFREHVKDILEK 314
PP EA + V YD+ + TDN K D + + V + E+
Sbjct: 62 PPPEAKQVPVSYYDSTYLSTDNEK------DNYLKGVTKLFER 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,683,456
Number of Sequences: 62578
Number of extensions: 335222
Number of successful extensions: 816
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 38
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)