Query 020138
Match_columns 330
No_of_seqs 142 out of 407
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 2.4E-58 5.2E-63 444.8 18.6 211 5-217 1-214 (336)
2 cd03571 ENTH_epsin ENTH domain 100.0 1.4E-49 3E-54 337.6 13.5 123 25-147 1-123 (123)
3 KOG2057 Predicted equilibrativ 100.0 1.2E-46 2.6E-51 363.1 14.2 180 6-185 4-192 (499)
4 PF01417 ENTH: ENTH domain; I 100.0 2E-43 4.3E-48 295.8 14.7 124 23-146 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 6E-35 1.3E-39 244.8 13.2 126 24-150 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 9.9E-26 2.1E-30 191.9 10.5 113 28-143 4-120 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 6.9E-23 1.5E-27 168.5 11.9 113 27-142 2-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 8.9E-19 1.9E-23 145.8 10.7 112 26-140 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.7 5.7E-08 1.2E-12 90.5 8.8 112 24-136 2-116 (280)
10 KOG0251 Clathrin assembly prot 98.2 7.4E-06 1.6E-10 84.3 10.3 109 22-134 20-132 (491)
11 PF00790 VHS: VHS domain; Int 98.2 1.2E-05 2.7E-10 69.0 9.6 109 23-140 3-116 (140)
12 smart00288 VHS Domain present 97.8 0.00026 5.7E-09 60.6 10.6 108 27-141 2-110 (133)
13 cd03565 VHS_Tom1 VHS domain fa 97.7 0.00043 9.3E-09 60.3 11.5 112 25-141 1-114 (141)
14 cd03568 VHS_STAM VHS domain fa 97.7 0.00065 1.4E-08 59.5 11.6 107 27-141 2-109 (144)
15 cd03561 VHS VHS domain family; 97.6 0.0006 1.3E-08 58.2 10.7 109 27-141 2-111 (133)
16 cd03569 VHS_Hrs_Vps27p VHS dom 97.6 0.0011 2.4E-08 57.8 11.8 111 23-141 2-113 (142)
17 cd03567 VHS_GGA VHS domain fam 97.4 0.0023 4.9E-08 56.0 11.7 111 25-141 1-115 (139)
18 KOG1087 Cytosolic sorting prot 96.7 0.014 3.1E-07 60.3 10.8 108 26-140 2-110 (470)
19 KOG2199 Signal transducing ada 94.5 0.21 4.7E-06 51.1 9.1 85 22-112 5-96 (462)
20 KOG0980 Actin-binding protein 83.7 2.3 5.1E-05 47.3 6.3 108 27-138 8-115 (980)
21 KOG1086 Cytosolic sorting prot 77.0 8.2 0.00018 40.6 7.2 31 73-104 56-86 (594)
22 cd03562 CID CID (CTD-Interacti 74.2 27 0.00059 28.5 8.5 101 27-141 5-107 (114)
23 KOG0921 Dosage compensation co 70.3 22 0.00048 40.6 9.0 11 174-184 1188-1198(1282)
24 KOG2176 Exocyst complex, subun 64.5 2.9 6.4E-05 46.0 1.0 46 24-76 16-63 (800)
25 PF12755 Vac14_Fab1_bd: Vacuol 63.3 45 0.00098 27.4 7.5 76 56-142 22-97 (97)
26 smart00582 RPR domain present 63.2 47 0.001 27.2 7.7 95 41-142 11-107 (121)
27 KOG1924 RhoA GTPase effector D 49.4 1.8E+02 0.0038 33.2 11.1 110 43-162 368-485 (1102)
28 PF14979 TMEM52: Transmembrane 46.5 15 0.00033 33.3 2.2 18 285-302 116-133 (154)
29 COG5602 SIN3 Histone deacetyla 43.0 67 0.0014 36.7 6.9 69 14-84 578-658 (1163)
30 PF12755 Vac14_Fab1_bd: Vacuol 42.6 63 0.0014 26.5 5.2 60 22-92 35-96 (97)
31 KOG1818 Membrane trafficking a 42.4 69 0.0015 35.0 6.7 105 25-138 8-115 (634)
32 PF06881 Elongin_A: RNA polyme 39.4 37 0.00081 28.1 3.5 42 40-84 18-72 (109)
33 KOG2160 Armadillo/beta-catenin 38.7 2.8E+02 0.0061 28.2 10.0 141 19-160 161-328 (342)
34 PF01603 B56: Protein phosphat 36.3 2.9E+02 0.0063 28.0 9.9 97 39-142 264-370 (409)
35 KOG0037 Ca2+-binding protein, 31.1 79 0.0017 30.3 4.5 52 28-83 77-132 (221)
36 cd03820 GT1_amsD_like This fam 31.0 80 0.0017 27.8 4.4 33 128-160 305-337 (348)
37 COG2180 NarJ Nitrate reductase 30.7 1.3E+02 0.0029 27.9 5.9 70 6-85 87-161 (179)
38 smart00667 LisH Lissencephaly 30.0 61 0.0013 20.0 2.6 20 85-104 9-28 (34)
39 PF07571 DUF1546: Protein of u 29.6 2E+02 0.0044 23.2 6.2 51 43-97 27-80 (92)
40 PF10176 DUF2370: Protein of u 29.5 32 0.0007 33.1 1.7 21 283-303 41-61 (233)
41 cd03817 GT1_UGDG_like This fam 28.4 66 0.0014 28.8 3.5 30 131-160 332-361 (374)
42 PRK14137 recX recombination re 26.3 4.4E+02 0.0095 24.4 8.5 50 57-109 132-182 (195)
43 cd03821 GT1_Bme6_like This fam 25.9 96 0.0021 27.7 4.0 32 129-160 332-364 (375)
44 PRK15054 nitrate reductase 2 s 24.3 2.3E+02 0.0049 27.3 6.4 72 6-87 81-157 (231)
45 PF08513 LisH: LisH; InterPro 23.6 1.1E+02 0.0024 19.6 2.9 19 85-103 6-24 (27)
46 PF08467 Luteo_P1-P2: Luteovir 23.3 1.3E+02 0.0029 30.4 4.7 41 123-163 138-178 (361)
47 PF10151 DUF2359: Uncharacteri 22.6 1.3E+02 0.0027 31.8 4.6 58 60-120 167-232 (469)
48 PF13524 Glyco_trans_1_2: Glyc 22.4 1.6E+02 0.0034 22.4 4.2 29 128-156 48-76 (92)
49 cd03823 GT1_ExpE7_like This fa 22.2 1.3E+02 0.0028 26.9 4.1 28 129-156 316-343 (359)
50 PF12717 Cnd1: non-SMC mitotic 21.8 5E+02 0.011 22.8 7.7 53 46-100 9-62 (178)
51 COG5218 YCG1 Chromosome conden 21.8 3.9E+02 0.0084 29.9 8.1 92 40-143 25-121 (885)
52 PF12668 DUF3791: Protein of u 20.9 1.1E+02 0.0023 23.0 2.8 44 61-104 6-56 (62)
53 KOG0132 RNA polymerase II C-te 20.5 1.3E+02 0.0027 34.0 4.2 27 225-252 776-802 (894)
54 cd03814 GT1_like_2 This family 20.4 1.3E+02 0.0028 27.1 3.8 33 128-160 318-350 (364)
55 COG4974 XerD Site-specific rec 20.2 64 0.0014 32.2 1.8 30 88-118 254-284 (300)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-58 Score=444.84 Aligned_cols=211 Identities=48% Similarity=0.744 Sum_probs=184.6
Q ss_pred hhhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHH
Q 020138 5 FDQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKAL 84 (330)
Q Consensus 5 ~~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL 84 (330)
+.+++++|+|.++|+|++|+++|+||++||+||||||++++|+|||++||++.+|.+||.||||||+++||+||||||||
T Consensus 1 ~~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaL 80 (336)
T KOG2056|consen 1 GTMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKAL 80 (336)
T ss_pred CcccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhccc
Q 020138 85 TVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNTT 164 (330)
Q Consensus 85 ~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~~ 164 (330)
+||||||+||||+||+|+|+|+++|++|+.|+|+|++|+|+|++||+||++|+.||+|+++|++||++|+++|.||.+.+
T Consensus 81 tlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~ 160 (336)
T KOG2056|consen 81 TLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFG 160 (336)
T ss_pred HHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccC-CCCCCCCCCCCCCCCcccccCCCC-C-CCCCCCCCccCCCCCCCCCCCC
Q 020138 165 AGGMYR-PGSYSSSGGNGDRYDNDRYEGRYG-N-DDQNGYGREREYGYGYRDDDRS 217 (330)
Q Consensus 165 ~g~~~~-~gs~ss~ggy~~~~d~~~~~~~~g-~-~~~~~~g~~~~~~~~~~~~~~~ 217 (330)
.++.+. +++.+++++|+++.+.+-...... . .++..++.+.++. +......
T Consensus 161 ~~~~~~~~~~~~s~~s~~d~~~~~~~~~~s~e~~~~r~~~~~~~e~~--~~~~~~~ 214 (336)
T KOG2056|consen 161 PGSISNKSNSERSSASYQDDDDSAGPPRTSEEDDQGRPSTSNEEEYE--LQSALSL 214 (336)
T ss_pred CCccccccccccCccccccchhhccCCccccchhhcccccccccchh--hhhhhhh
Confidence 766554 556678888988765321111111 1 3455566555555 5455444
No 2
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=1.4e-49 Score=337.55 Aligned_cols=123 Identities=62% Similarity=1.061 Sum_probs=121.1
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020138 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
|+|++|++|||||||||++++|++||++||++++|.+||++|||||.+++++||||||||+||||||+|||++||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHH
Q 020138 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERII 147 (330)
Q Consensus 105 h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~ 147 (330)
|+++|++|++|+|+|++|+|+|.+||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999984
No 3
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=363.05 Aligned_cols=180 Identities=32% Similarity=0.681 Sum_probs=167.9
Q ss_pred hhHHHHHHHHhcccccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC--hhhHHHHHHHHHHHhcc-CCCchhHHHH
Q 020138 6 DQTFRDIKRGVNKKVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRN--YHEYQMIIGVIWKRIND-TGKNWRHVYK 82 (330)
Q Consensus 6 ~q~vrdikr~vkn~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn--~~~y~~Im~vLwKRL~~-~gk~WR~VyK 82 (330)
...||+|.++++++||||+++|.+||||||.|||||++.+|.|||.+||. +++|.++|.+||.||.+ ..+.||+|||
T Consensus 4 m~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYK 83 (499)
T KOG2057|consen 4 MEKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYK 83 (499)
T ss_pred hHHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999 89999999999999865 5679999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHh-hhhhh
Q 020138 83 ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAAN-RDKFR 161 (330)
Q Consensus 83 aL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~kn-R~Ky~ 161 (330)
+|+||.|||+|||||||.++|+|+|.|+.|.+|+|+|+.|||||+|||+|.|+|+++.+|+++|++||+||+++ ++||+
T Consensus 84 SLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~ 163 (499)
T KOG2057|consen 84 SLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYR 163 (499)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccCCCccCCCCC-----CCCCCCCCCCC
Q 020138 162 NTTAGGMYRPGSY-----SSSGGNGDRYD 185 (330)
Q Consensus 162 g~~~g~~~~~gs~-----ss~ggy~~~~d 185 (330)
|+.+-.|.+++++ .+-.+|+..||
T Consensus 164 G~~qd~mggf~~SekydpepkS~wDeeWD 192 (499)
T KOG2057|consen 164 GFDQDDMGGFGSSEKYDPEPKSGWDEEWD 192 (499)
T ss_pred ccchhhccccccccccCCCcccccccccc
Confidence 9988776665543 34567888776
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=2e-43 Score=295.80 Aligned_cols=124 Identities=56% Similarity=0.984 Sum_probs=114.5
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHh-ccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020138 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRI-NDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL-~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
||++|++|++|||||||||++++|+|||++||++.+|..||++||+|| ..++++||++||||+||+|||+|||++||.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 8899999999999999999999999999999
Q ss_pred HHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHH
Q 020138 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERI 146 (330)
Q Consensus 102 ~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L 146 (330)
+|+|+..|+.|.+|+|+|++|+|+|.+||++|++|++||+|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=6e-35 Score=244.83 Aligned_cols=126 Identities=46% Similarity=0.770 Sum_probs=122.7
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 020138 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI 102 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~ 102 (330)
+++|++|++|||+|+|||++++|.+|+++||++ ..|..||.+||+||.+++ +||+|||||+||+|||+||+++|+.++
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999999999 899999999999999877 899999999999999999999999999
Q ss_pred HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHH
Q 020138 103 REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVR 150 (330)
Q Consensus 103 r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER 150 (330)
+.|...|..|.+|+++|++|.|+|.+||++|+.|.+||.|.+.|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999886
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.93 E-value=9.9e-26 Score=191.94 Aligned_cols=113 Identities=24% Similarity=0.362 Sum_probs=107.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 28 QKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHV-YKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 28 ~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~V-yKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
.+|+.||+|++|||++.+|.|||++||+. ..|.+||++|.|||++++ +|| +|||.||.||+.+|++.|+.|++.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 47899999999999999999999999995 889999999999999866 999 9999999999999999999999999
Q ss_pred hhhhhcccccee-eCC-CCCccchhHHHHHHHHHHhhcCH
Q 020138 106 SYQISTLSDFQY-IDS-SGRDQGSNVRKKSQSLVALVNDK 143 (330)
Q Consensus 106 ~~~I~~L~~Fqy-~D~-~GkD~G~nVR~KAk~Il~LL~D~ 143 (330)
.++|++|.+|++ +|+ .|.+.+..||.+|+++++||-..
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 999999999999 687 89999999999999999998654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.89 E-value=6.9e-23 Score=168.48 Aligned_cols=113 Identities=35% Similarity=0.440 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
|++|.+||++++|||+.++|.+|++++++. ..+..||+.|||||..+ +|++++|||+|||||++||+++|..+++.+
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 789999999999999999999999999887 56799999999999875 999999999999999999999999999999
Q ss_pred hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhcC
Q 020138 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVND 142 (330)
Q Consensus 106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~D 142 (330)
.+.++.+ .|.+.+..|.+++.+||+|+++|+++..|
T Consensus 80 ~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 80 DFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 9877655 56777778999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.78 E-value=8.9e-19 Score=145.79 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020138 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
.|+.|..||++++|+|..+.|.+|...|++ ...+..||..|++||.+ ++|++++|||+||.+||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 378899999999999999999999999999 78999999999999988 799999999999999999999999999999
Q ss_pred hhhhhhccccceeeCC-CCCccchhHHHHHHHHHHhh
Q 020138 105 HSYQISTLSDFQYIDS-SGRDQGSNVRKKSQSLVALV 140 (330)
Q Consensus 105 h~~~I~~L~~Fqy~D~-~GkD~G~nVR~KAk~Il~LL 140 (330)
|...| .|..|.+.++ .+.|+|..||..|+-|.+-|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 96666 6778888865 68899999999999887655
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.70 E-value=5.7e-08 Score=90.53 Aligned_cols=112 Identities=23% Similarity=0.335 Sum_probs=81.6
Q ss_pred chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020138 24 PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (330)
Q Consensus 24 S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r 103 (330)
+..|+-|..||+.+.-.|..+.+..|..+|++......++..|.+||... ++|..++|||+||.-||+-|++.|+.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~-~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLT-RNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS--SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHcccc-ccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 46789999999999999999999999999999667889999999999763 57999999999999999999999999998
Q ss_pred hhhhhhhccccceeeC---CCCCccchhHHHHHHHH
Q 020138 104 EHSYQISTLSDFQYID---SSGRDQGSNVRKKSQSL 136 (330)
Q Consensus 104 ~h~~~I~~L~~Fqy~D---~~GkD~G~nVR~KAk~I 136 (330)
.+...+..+..+.-.| +.+.+++.-||.=|+-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL 116 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYL 116 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHH
Confidence 7766566665553312 23557788888777544
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=7.4e-06 Score=84.32 Aligned_cols=109 Identities=26% Similarity=0.377 Sum_probs=90.0
Q ss_pred CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020138 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (330)
Q Consensus 22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~ 100 (330)
..+.+++.|..||+.+..+|..+.+..|-.+|-+. ....-++..|-.||+.+ ++|..+||||+||..||++|.+.|..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 46899999999999999999999999999999665 67889999999999775 58999999999999999999999999
Q ss_pred HHHhhhhhhhccccceeeCC---CCCccchhHHHHHH
Q 020138 101 DIREHSYQISTLSDFQYIDS---SGRDQGSNVRKKSQ 134 (330)
Q Consensus 101 e~r~h~~~I~~L~~Fqy~D~---~GkD~G~nVR~KAk 134 (330)
++...-..| .|.+| .|. .+-|+..-||.=|+
T Consensus 99 ~l~~~~~~l-~lS~F--~d~s~~~~~d~safVR~Ya~ 132 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDF--RDKSSSLTWDMSAFVRTYAL 132 (491)
T ss_pred HHHhccccc-chhhh--hcccccccchhhHHHHHHHH
Confidence 887655222 33444 332 35688888884443
No 11
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.18 E-value=1.2e-05 Score=68.96 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=80.1
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020138 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
.++++.+|..||+...-.|.-...-+|++.-.. ...-.+++..|.|||.. .+-..++-||+|||.|++||.+.|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478999999999988878877888888888544 55678999999999988 588999999999999999999998888
Q ss_pred HHhh--hhhhhccccceeeCCCCCccchh--HHHHHHHHHHhh
Q 020138 102 IREH--SYQISTLSDFQYIDSSGRDQGSN--VRKKSQSLVALV 140 (330)
Q Consensus 102 ~r~h--~~~I~~L~~Fqy~D~~GkD~G~n--VR~KAk~Il~LL 140 (330)
+-.. +..|..|-.-. ..+.. ||+|+..++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~-------~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSK-------KTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHT-------TTHHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccC-------CCCchhHHHHHHHHHHHHH
Confidence 7433 33333322221 12222 999988887654
No 12
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.78 E-value=0.00026 Score=60.64 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
|.+|..||+...-.|.-..+-+|++.-.+ ...-...+..|.|||.. ++-..++.||+|||.|++|+...|..++-+.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 67899999977777887888888887644 33468899999999985 4788899999999999999998888877543
Q ss_pred hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
-+ +..|... ..+ +.....|++|+..++.-..
T Consensus 80 ~f-l~~L~~l--~~~--~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 80 EF-LNELVKL--IKP--KYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HH-HHHHHHH--HcC--CCCcHHHHHHHHHHHHHHH
Confidence 32 2333321 111 1111238988888776443
No 13
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.75 E-value=0.00043 Score=60.27 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=77.9
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020138 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (330)
Q Consensus 25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r 103 (330)
|.+.+|..||+...-.|.=...-+|++.-.+. ..-...|..|.|||. ++++-+.++-||+|||-|++|+-.+|-.++-
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 46889999999766666667777777775443 345789999999996 4568889999999999999999999888874
Q ss_pred hhhhhhhc-cccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 104 EHSYQIST-LSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 104 ~h~~~I~~-L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
..-+ +.. |... +.++ .+.-..|++|+..|+.-..
T Consensus 80 sk~F-l~e~L~~~--i~~~-~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 KKDF-IKDVLVKL--INPK-NNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHh-hhHHHHHH--Hccc-CCCcHHHHHHHHHHHHHHH
Confidence 3321 222 2221 1111 1223468888887776554
No 14
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.68 E-value=0.00065 Score=59.49 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
|.+|..||+...-.|.=..+-+|+..--+ ...-...|..|.|||.. ++-..++.||+|||-|++|+...|-.++-+-
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 67899999977666776888888887543 44568899999999986 4688899999999999999999988887432
Q ss_pred hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
..+..|... +.+. .-..|++|+..++.-..
T Consensus 80 -~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 -DFTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 223333322 1111 44589999988887664
No 15
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.65 E-value=0.0006 Score=58.19 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
+..|.+||+...-.|.-..+.+|+..-.+ ...-.+.+..|.|||... +-...+-||.|||.|++||...|..++-+.
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 46789999976667777888888887644 345689999999999874 688999999999999999999888887664
Q ss_pred hhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 106 SYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 106 ~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
-++.+ |..+ .... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l--~~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKI--AKNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHH--hCCC-CCCCHHHHHHHHHHHHHHH
Confidence 33333 3332 1111 1234589999888876554
No 16
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.60 E-value=0.0011 Score=57.80 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=80.9
Q ss_pred CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 020138 23 VPGIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDD 101 (330)
Q Consensus 23 ~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e 101 (330)
.++.+..|..||+...-.|.=..+-+|++.--. ...-.+.+..|.|||.. ++-+.++-||+|||.|++|+...|-.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 378899999999977677777887888777543 33457899999999977 578999999999999999998887777
Q ss_pred HHhhhhhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 102 IREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 102 ~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
+-+.- .+..|... ... ..-..|++|+-.++.-..
T Consensus 80 vas~~-fl~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASRE-FMDELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHH-HHHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 75422 12223221 111 234588888888876544
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.45 E-value=0.0023 Score=55.97 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=80.7
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020138 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIR 103 (330)
Q Consensus 25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r 103 (330)
+.|..|..||+.-.-.|.-..+-+|++.-.+ ...-...+..|.|||+.. +-..++-||+|||-|++|+-.+|-.++-
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3688999999976667777788888887643 334578999999999854 5778999999999999999998877774
Q ss_pred hh--hh-hhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 104 EH--SY-QISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 104 ~h--~~-~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
.. +. +++-+.. .| .|...-..|++|+..++.--.
T Consensus 79 s~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 79 KFRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred hHHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 32 22 2222221 11 133445799999988887665
No 18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.014 Score=60.31 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhcC-hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020138 26 IEQKVLDATSNEPWGPHGTLLADIAQATRN-YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 26 ~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn-~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
+..+|..||+..--+|.=.+--+||+.--. ...-.+++..|.|||+.+.. +..+=||+|||=|++|+-+.|=..+-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 467899999977667776777888887633 23456999999999987654 777889999999999998776655533
Q ss_pred hhhhhhccccceeeCCCCCccchhHHHHHHHHHHhh
Q 020138 105 HSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALV 140 (330)
Q Consensus 105 h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL 140 (330)
--++=+.++.|++. ..-..||+|+-.+|+.=
T Consensus 80 k~fL~emVk~~k~~-----~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNK-----PRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccccC-----CcchhHHHHHHHHHHHH
Confidence 22222344555443 14568999988888653
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=94.46 E-value=0.21 Score=51.06 Aligned_cols=85 Identities=26% Similarity=0.364 Sum_probs=64.6
Q ss_pred CCchHHHHHHHHhc----CCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCH
Q 020138 22 KVPGIEQKVLDATS----NEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSE 96 (330)
Q Consensus 22 n~S~~E~kVrEATs----nDpWGPt~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSE 96 (330)
..++.|..|..||+ +|+|+ ++-+||..- -+++-=+..|+.|.|||+.. .--.|+-||+||.=|+.|+-.
T Consensus 5 ~~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~ 78 (462)
T KOG2199|consen 5 SANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGK 78 (462)
T ss_pred CcchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcch
Confidence 35789999999998 57884 555666553 34445578899999999865 456899999999999999999
Q ss_pred HHHHHHH--hhhhhhhcc
Q 020138 97 RVIDDIR--EHSYQISTL 112 (330)
Q Consensus 97 rvV~e~r--~h~~~I~~L 112 (330)
+|.-++. +....++.|
T Consensus 79 ~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 79 RFRLEVSSRDFTTELRAL 96 (462)
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 9888884 444445444
No 20
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.71 E-value=2.3 Score=47.34 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHS 106 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~ 106 (330)
-.-|+.|+|.+...|-.++..-|.-.|++.+.-...+.+| ||+.-. .+-...+|.+.||.=||.-|.+.++.+...+.
T Consensus 8 ~~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~~FWt~i-k~~PL~-~~~VltwKfchllHKvLreGHpsal~es~r~r 85 (980)
T KOG0980|consen 8 LEAVQKAISKDETPPKRKHVRTIIVGTHDEKSSKIFWTTI-KRQPLE-NHEVLTWKFCHLLHKVLREGHPSALEESQRYK 85 (980)
T ss_pred HHHHHHHhccccCCCchhhhhheeeeecccccchhHHHHh-hccccc-cchHHHHHHHHHHHHHHHcCCcchhHHHHHHH
Confidence 3568899999999999999999999999876543333333 444322 35567889999999999999999999999999
Q ss_pred hhhhccccceeeCCCCCccchhHHHHHHHHHH
Q 020138 107 YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138 (330)
Q Consensus 107 ~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~ 138 (330)
.-|+.|..+--.- -.+.|.-||.=+|-|..
T Consensus 86 ~~i~~l~r~w~~l--s~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 86 KWITQLGRMWGHL--SDGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHHhccc--cccchHHHHHHHHHHHH
Confidence 9999998762211 15788888887766554
No 21
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.99 E-value=8.2 Score=40.57 Aligned_cols=31 Identities=29% Similarity=0.638 Sum_probs=25.1
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHh
Q 020138 73 TGKNWRHVYKALTVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 73 ~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~ 104 (330)
++.+|-.+ -||++||||++||-++|=+++=.
T Consensus 56 SPqe~EAl-~altvLe~cmkncGekfH~evgk 86 (594)
T KOG1086|consen 56 SPQEWEAL-QALTVLEYCMKNCGEKFHEEVGK 86 (594)
T ss_pred ChhHHHHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence 46788766 48999999999999988777643
No 22
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=74.25 E-value=27 Score=28.48 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHh-cChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q 020138 27 EQKVLDATSNEPWGPHGTLLADIAQAT-RNYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREH 105 (330)
Q Consensus 27 E~kVrEATsnDpWGPt~s~L~EIA~~T-yn~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h 105 (330)
+..+++-|.+. .+...++.|+.+. .+......|+++|.++|...+. .+-+-.|-|++=+++|........+...
T Consensus 5 ~~~l~~L~~~~---~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~~ 79 (114)
T cd03562 5 NALLEKLTFNK---NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSEF 79 (114)
T ss_pred HHHHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHHH
Confidence 34455556655 4444455555554 3456778999999999977543 6778899999999999766655554443
Q ss_pred h-hhhhccccceeeCCCCCccchhHHHHHHHHHHhhc
Q 020138 106 S-YQISTLSDFQYIDSSGRDQGSNVRKKSQSLVALVN 141 (330)
Q Consensus 106 ~-~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~LL~ 141 (330)
+ .++. .-|+ ..-..+|+|..+|+++=+
T Consensus 80 ~~~~f~--~~~~-------~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 80 LVPLFL--DAYE-------KVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHH--HHHH-------hCCHHHHHHHHHHHHHcc
Confidence 2 1111 1111 123477888888877644
No 23
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=70.34 E-value=22 Score=40.58 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=6.6
Q ss_pred CCCCCCCCCCC
Q 020138 174 YSSSGGNGDRY 184 (330)
Q Consensus 174 ~ss~ggy~~~~ 184 (330)
..+.||||+.|
T Consensus 1188 sysgGGYGggy 1198 (1282)
T KOG0921|consen 1188 SYSGGGYGGGY 1198 (1282)
T ss_pred CCCCCCcCCCC
Confidence 34566676665
No 24
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.54 E-value=2.9 Score=46.03 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=33.6
Q ss_pred chHHHHHH--HHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCc
Q 020138 24 PGIEQKVL--DATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKN 76 (330)
Q Consensus 24 S~~E~kVr--EATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~ 76 (330)
+..|..|. +||+.+.|||+ -+.+|+...-..+|..|..++.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~-------lRs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPT-------LRSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhH-------HHHHHccCCcchHHHHHHHHHHhhHHH
Confidence 45555554 88999999998 455666667778888888887766543
No 25
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=63.26 E-value=45 Score=27.39 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCCCCCccchhHHHHHHH
Q 020138 56 YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDSSGRDQGSNVRKKSQS 135 (330)
Q Consensus 56 ~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~ 135 (330)
.+.+..|+..|.+.+.+. .||.=|=|.--|--|++...+.++..+-+-...|-.| =.|.-.+||.-|+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl---------~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL---------SADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HcCCchhHHHHHHH
Confidence 345688999998888776 7998899998888899988888777554433333222 12556689999999
Q ss_pred HHHhhcC
Q 020138 136 LVALVND 142 (330)
Q Consensus 136 Il~LL~D 142 (330)
|-.||.|
T Consensus 91 Ld~llkd 97 (97)
T PF12755_consen 91 LDRLLKD 97 (97)
T ss_pred HHHHhcC
Confidence 9999986
No 26
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=63.18 E-value=47 Score=27.15 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHhc-ChhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhh-hhhccccceee
Q 020138 41 PHGTLLADIAQATR-NYHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSY-QISTLSDFQYI 118 (330)
Q Consensus 41 Pt~s~L~EIA~~Ty-n~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~-~I~~L~~Fqy~ 118 (330)
++...+..++...- +.+....|+++|.+.+...+.+ +-+-.|-|++-+|+|+.......++..+. .|.. -|...
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666666666664 4456678999999999765443 55678899999999986553333333221 1111 11111
Q ss_pred CCCCCccchhHHHHHHHHHHhhcC
Q 020138 119 DSSGRDQGSNVRKKSQSLVALVND 142 (330)
Q Consensus 119 D~~GkD~G~nVR~KAk~Il~LL~D 142 (330)
..... ..+|+|..+|+++=.+
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 4789999999988664
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.38 E-value=1.8e+02 Score=33.24 Aligned_cols=110 Identities=22% Similarity=0.317 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHhccCCC--chhHHHHHHHHHH--HHHHcC----CHHHHHHHHhhhhhhhcccc
Q 020138 43 GTLLADIAQATRNYHEYQMIIGVIWKRINDTGK--NWRHVYKALTVLE--YLVAHG----SERVIDDIREHSYQISTLSD 114 (330)
Q Consensus 43 ~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk--~WR~VyKaL~LLE--YLLkNG----SErvV~e~r~h~~~I~~L~~ 114 (330)
-+++..+-.-+.+++++..++.+||.-+.+++. .+..|+.-|+|+. |-++-- -|.||..|--|..-+- -+
T Consensus 368 ~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~D--Pd 445 (1102)
T KOG1924|consen 368 EELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMD--PD 445 (1102)
T ss_pred HHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCC--CC
Confidence 355556666788899999999999999988653 4444444444331 111111 1334444433332221 13
Q ss_pred ceeeCCCCCccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhc
Q 020138 115 FQYIDSSGRDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRN 162 (330)
Q Consensus 115 Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g 162 (330)
|.|..-=..| ..+|++-+.|.+.+++-+++|..+-.||-.
T Consensus 446 f~yr~~l~id--------~~~liD~~vdkak~eeseqkA~e~~kk~~k 485 (1102)
T KOG1924|consen 446 FKYRFRLDID--------LTELIDKMVDKAKAEESEQKAAELEKKFDK 485 (1102)
T ss_pred cchhhcccCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433210112 345666677777777777777666666543
No 28
>PF14979 TMEM52: Transmembrane 52
Probab=46.47 E-value=15 Score=33.26 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=14.0
Q ss_pred CCCCCCChHHHhhhcCCC
Q 020138 285 NIGAPPSYEEAVSESRSP 302 (330)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~ 302 (330)
....||+|||||+-+.+.
T Consensus 116 a~e~PP~YeEAlkM~k~r 133 (154)
T PF14979_consen 116 ALELPPSYEEALKMAKPR 133 (154)
T ss_pred CCCCCCCHHHHHhhcccc
Confidence 466799999999984443
No 29
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=43.04 E-value=67 Score=36.71 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHhcccccCCchHHHHHHHHhcCCC-CCCCHHHHHHHHHHhcChhhHHHHHH-----------HHHHHhccCCCchhHHH
Q 020138 14 RGVNKKVLKVPGIEQKVLDATSNEP-WGPHGTLLADIAQATRNYHEYQMIIG-----------VIWKRINDTGKNWRHVY 81 (330)
Q Consensus 14 r~vkn~v~n~S~~E~kVrEATsnDp-WGPt~s~L~EIA~~Tyn~~~y~~Im~-----------vLwKRL~~~gk~WR~Vy 81 (330)
..+.+++.+.++.|+.... .-.. =+|+-++..++...-|..++-++|++ ++.|||..+.++||.+.
T Consensus 578 e~i~d~~~~~~e~Eka~~~--Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~Kd~EWR~~k 655 (1163)
T COG5602 578 EQIIDKIKDMEESEKANKT--LPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKDEEWRSCK 655 (1163)
T ss_pred HHHHHHhhcchhhHHHHhc--CCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHhhHHHHHHH
Confidence 4455666666666654422 1121 26888999999999999988878876 56788888888888665
Q ss_pred HHH
Q 020138 82 KAL 84 (330)
Q Consensus 82 KaL 84 (330)
..+
T Consensus 656 Rew 658 (1163)
T COG5602 656 REW 658 (1163)
T ss_pred HHH
Confidence 433
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.64 E-value=63 Score=26.53 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh--hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 020138 22 KVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNY--HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVA 92 (330)
Q Consensus 22 n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~--~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLk 92 (330)
-.+..+.+||.+.. ..|..|+..+... ..|.+|+..|+|.+.+...+ |-++-.+|+-|||
T Consensus 35 ~~~D~d~rVRy~Ac--------EaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 35 CFDDQDSRVRYYAC--------EALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HcCCCcHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 34555666664432 4566666665442 46899999999999997765 6688889999886
No 31
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.42 E-value=69 Score=35.03 Aligned_cols=105 Identities=21% Similarity=0.141 Sum_probs=69.8
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH-
Q 020138 25 GIEQKVLDATSNEPWGPHGTLLADIAQATRNY-HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVIDDI- 102 (330)
Q Consensus 25 ~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~-~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~e~- 102 (330)
..+.++..||+.+..-++-...-+|....... .....-|..|.+|++ ..+-+...=+|.|++..++||---|..++
T Consensus 8 ~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei~ 85 (634)
T KOG1818|consen 8 AFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEIA 85 (634)
T ss_pred HHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHHH
Confidence 35677788999777666666777777776542 234566778888887 55777788899999999999875666655
Q ss_pred -HhhhhhhhccccceeeCCCCCccchhHHHHHHHHHH
Q 020138 103 -REHSYQISTLSDFQYIDSSGRDQGSNVRKKSQSLVA 138 (330)
Q Consensus 103 -r~h~~~I~~L~~Fqy~D~~GkD~G~nVR~KAk~Il~ 138 (330)
|+.+..|..|-.=+=+ -.+|++|...|+.
T Consensus 86 tre~m~~~~~~l~~~~~-------~e~v~~~~l~~~q 115 (634)
T KOG1818|consen 86 TREFMDLLKSLLESQRI-------HEEVKNKILELIQ 115 (634)
T ss_pred HHHHHHHHHhhhccccc-------cchHHHHHHHHHH
Confidence 5556655544322212 2356666655554
No 32
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=39.45 E-value=37 Score=28.10 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc-------------CCCchhHHHHHH
Q 020138 40 GPHGTLLADIAQATRNYHEYQMIIGVIWKRIND-------------TGKNWRHVYKAL 84 (330)
Q Consensus 40 GPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~-------------~gk~WR~VyKaL 84 (330)
.++..+|..|-..+ .++....+.||+++.. .++.||.+|-.+
T Consensus 18 ~~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~ 72 (109)
T PF06881_consen 18 KCSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKL 72 (109)
T ss_pred cCCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHH
Confidence 34667777777765 4555667888888753 246899988754
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=2.8e+02 Score=28.25 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=85.1
Q ss_pred cccCCchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChh----hHHHH--HHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q 020138 19 KVLKVPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYH----EYQMI--IGVIWKRINDTGKNWRHVYKALTVLEYLVA 92 (330)
Q Consensus 19 ~v~n~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~----~y~~I--m~vLwKRL~~~gk~WR~VyKaL~LLEYLLk 92 (330)
.|+..--.+..+.-.|+++|-....+.|-.|+-+-.+.. .|..| ..+|...|...+..-+-.-|++.||.+|+.
T Consensus 161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 344444445555667788888998999999999887643 33333 457778888888889999999999999997
Q ss_pred cCCHHHHHHHHhhhh------hhhccc------------cceeeCCCCC---ccchhHHHHHHHHHHhhcCHHHHHHHHH
Q 020138 93 HGSERVIDDIREHSY------QISTLS------------DFQYIDSSGR---DQGSNVRKKSQSLVALVNDKERIIEVRQ 151 (330)
Q Consensus 93 NGSErvV~e~r~h~~------~I~~L~------------~Fqy~D~~Gk---D~G~nVR~KAk~Il~LL~D~e~L~eER~ 151 (330)
--....- .+..+.. .+..|. .+-+....++ +--.+.++.-++.+.++.+-+.++.+|+
T Consensus 241 ~~~s~~d-~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~ 319 (342)
T KOG2160|consen 241 EDKSDED-IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQ 319 (342)
T ss_pred hhhhhhh-HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432111 1111111 111110 0100001122 2344667777777777777777777777
Q ss_pred HHHHhhhhh
Q 020138 152 KAAANRDKF 160 (330)
Q Consensus 152 kA~knR~Ky 160 (330)
-+.......
T Consensus 320 l~~~l~~~~ 328 (342)
T KOG2160|consen 320 LVNSLWEIC 328 (342)
T ss_pred HHHHHHHHh
Confidence 766655443
No 34
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=36.33 E-value=2.9e+02 Score=28.04 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCCCHHH-----HHHHHHHh--cChhhHHHHHHHHHHHhcc--CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHhhhhhh
Q 020138 39 WGPHGTL-----LADIAQAT--RNYHEYQMIIGVIWKRIND--TGKNWRHVYKALTVLEYLVAHGSERVIDDIREHSYQI 109 (330)
Q Consensus 39 WGPt~s~-----L~EIA~~T--yn~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL~LLEYLLkNGSErvV~e~r~h~~~I 109 (330)
|..+.+. |.||...- ....++..|+..|+++|.. ...++...-.||.++. .+.++..+.+|...|
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~------n~~~~~li~~~~~~i 337 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN------NEYFLSLISQNSRVI 337 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG------SHHHHHHHHCTHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC------CHHHHHHHHhChHHH
Confidence 5555443 33444442 5567899999999999975 5668888888887763 455566665554433
Q ss_pred hccccceeeCCC-CCccchhHHHHHHHHHHhhcC
Q 020138 110 STLSDFQYIDSS-GRDQGSNVRKKSQSLVALVND 142 (330)
Q Consensus 110 ~~L~~Fqy~D~~-GkD~G~nVR~KAk~Il~LL~D 142 (330)
=.+ =|...... -..|-..||..|..++.+|.|
T Consensus 338 ~p~-i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 338 LPI-IFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHH-HHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111 01111112 246788999999999999975
No 35
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=31.09 E-value=79 Score=30.34 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhcChh----hHHHHHHHHHHHhccCCCchhHHHHH
Q 020138 28 QKVLDATSNEPWGPHGTLLADIAQATRNYH----EYQMIIGVIWKRINDTGKNWRHVYKA 83 (330)
Q Consensus 28 ~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~----~y~~Im~vLwKRL~~~gk~WR~VyKa 83 (330)
.-+..|.+|..|-|=+-.--.+....|+.+ -...=+..|||+|+ .||.|||.
T Consensus 77 ~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----~Wr~vF~~ 132 (221)
T KOG0037|consen 77 KELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----QWRNVFRT 132 (221)
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHHHHh
Confidence 445678888888664322222222222221 11233467888884 69999983
No 36
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=31.00 E-value=80 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q 020138 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (330)
Q Consensus 128 nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky 160 (330)
.+.+-|+.|.+||+|++..++.++++++..++|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999988887766666
No 37
>COG2180 NarJ Nitrate reductase delta subunit [Energy production and conversion]
Probab=30.69 E-value=1.3e+02 Score=27.87 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhcccccC-----CchHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHH
Q 020138 6 DQTFRDIKRGVNKKVLK-----VPGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (330)
Q Consensus 6 ~q~vrdikr~vkn~v~n-----~S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~V 80 (330)
+|++.+|+..-++.=++ .+..==.+.|..+.-+| ++++.--.++.-|+.+|.+||.+.+.-|.++
T Consensus 87 Gqaml~l~~~Y~~~Gl~~~~~ElPDyLPl~LEfLa~~~~----------~~a~~~L~~~~~~~~~l~~~Lee~~spYa~~ 156 (179)
T COG2180 87 GQAMLDLLQTYEKYGLEPDVRELPDYLPLMLEFLALVPE----------EAARRLLSDIRPILAELAKRLEERDSPYAYL 156 (179)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHhcCCH----------HHHHHHHHHhccHHHHHHHHHHhcCCcHHHH
Confidence 67888888775553222 23333455666666555 2222222346779999999999999999999
Q ss_pred HHHHH
Q 020138 81 YKALT 85 (330)
Q Consensus 81 yKaL~ 85 (330)
+++|.
T Consensus 157 ~~aL~ 161 (179)
T COG2180 157 FDALL 161 (179)
T ss_pred HHHHH
Confidence 99875
No 38
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=30.00 E-value=61 Score=20.02 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCHHHHHHHHh
Q 020138 85 TVLEYLVAHGSERVIDDIRE 104 (330)
Q Consensus 85 ~LLEYLLkNGSErvV~e~r~ 104 (330)
.|++||+.+|-......+..
T Consensus 9 lI~~yL~~~g~~~ta~~l~~ 28 (34)
T smart00667 9 LILEYLLRNGYEETAETLQK 28 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHH
Confidence 49999999998877766644
No 39
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.56 E-value=2e+02 Score=23.20 Aligned_cols=51 Identities=27% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcC---hhhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHH
Q 020138 43 GTLLADIAQATRN---YHEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSER 97 (330)
Q Consensus 43 ~s~L~EIA~~Tyn---~~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSEr 97 (330)
..+|..|++. |. ..-..+|+..+.|.|.+..+.+-..|=||.-|..| |++-
T Consensus 27 A~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 27 ASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 4677888765 33 23467999999999999999999999999999988 6654
No 40
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=29.53 E-value=32 Score=33.07 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=15.8
Q ss_pred ccCCCCCCChHHHhhhcCCCC
Q 020138 283 EQNIGAPPSYEEAVSESRSPV 303 (330)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~ 303 (330)
+..-..||+||+|..+...++
T Consensus 41 ~~~~~~PPsYe~AaaD~~P~Y 61 (233)
T PF10176_consen 41 EEQEEAPPSYEEAAADAAPPY 61 (233)
T ss_pred cccCCCCcCchHhcccCCCCc
Confidence 345678999999999865444
No 41
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=28.40 E-value=66 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q 020138 131 KKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (330)
Q Consensus 131 ~KAk~Il~LL~D~e~L~eER~kA~knR~Ky 160 (330)
+-++.|..|++|++.+++.++.+++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 789999999999999888887777765554
No 42
>PRK14137 recX recombination regulator RecX; Provisional
Probab=26.34 E-value=4.4e+02 Score=24.42 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHhhhhhh
Q 020138 57 HEYQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHG-SERVIDDIREHSYQI 109 (330)
Q Consensus 57 ~~y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNG-SErvV~e~r~h~~~I 109 (330)
+++..++.++.|++..........- .|+.||+..| +..+|..+-.++...
T Consensus 132 de~e~a~~l~~KK~~~~~~~~~~k~---K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 132 EEQQEARNLLERRWSSFARKRDPRA---SAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred hHHHHHHHHHHHhccccCcchhHHH---HHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 4566777788888764322222222 3778999999 667777665554433
No 43
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=25.88 E-value=96 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHh-hhhh
Q 020138 129 VRKKSQSLVALVNDKERIIEVRQKAAAN-RDKF 160 (330)
Q Consensus 129 VR~KAk~Il~LL~D~e~L~eER~kA~kn-R~Ky 160 (330)
.-+.++.|..|++|++..++..+++++. .++|
T Consensus 332 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T cd03821 332 VDALAAALRRALELPQRLKAMGENGRALVEERF 364 (375)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 4778999999999998888888888776 6665
No 44
>PRK15054 nitrate reductase 2 subunit delta; Provisional
Probab=24.29 E-value=2.3e+02 Score=27.31 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhcccccCC-----chHHHHHHHHhcCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHhccCCCchhHH
Q 020138 6 DQTFRDIKRGVNKKVLKV-----PGIEQKVLDATSNEPWGPHGTLLADIAQATRNYHEYQMIIGVIWKRINDTGKNWRHV 80 (330)
Q Consensus 6 ~q~vrdikr~vkn~v~n~-----S~~E~kVrEATsnDpWGPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~~gk~WR~V 80 (330)
+|+|-+|+...+..=+.+ +..==.|.|-.+.-+..-....|. +..-|+..|..||...+.-|..+
T Consensus 81 GqAmvdL~~~Y~~~G~~~~~~ELPDyLPl~LEfla~~~~~~a~~~L~----------~~~~iLe~L~~rL~~~~SpYa~l 150 (231)
T PRK15054 81 GQAMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDDQAKEGLL----------NVAPILALLGGRLKQREAPWYAL 150 (231)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcchHHHHHHHHhcCChHHHHHHHH----------HHHHHHHHHHHHHHHcCCChHHH
Confidence 567778887766543322 333346677776655322223333 34569999999999999999999
Q ss_pred HHHHHHH
Q 020138 81 YKALTVL 87 (330)
Q Consensus 81 yKaL~LL 87 (330)
+.+|..|
T Consensus 151 ~~all~l 157 (231)
T PRK15054 151 FDALLQL 157 (231)
T ss_pred HHHHHHH
Confidence 9999543
No 45
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=23.57 E-value=1.1e+02 Score=19.58 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 020138 85 TVLEYLVAHGSERVIDDIR 103 (330)
Q Consensus 85 ~LLEYLLkNGSErvV~e~r 103 (330)
.|++||+++|=.....-|+
T Consensus 6 lI~~YL~~~Gy~~tA~~f~ 24 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFA 24 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHH
Confidence 5889999999777666554
No 46
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=23.32 E-value=1.3e+02 Score=30.44 Aligned_cols=41 Identities=5% Similarity=0.059 Sum_probs=33.4
Q ss_pred CccchhHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhhhcc
Q 020138 123 RDQGSNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRNT 163 (330)
Q Consensus 123 kD~G~nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky~g~ 163 (330)
.++-...+.+++.+++||++.+.|..-+.+++..=.+-+|.
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G~ 178 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIGR 178 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36777889999999999999999998888887755554444
No 47
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=22.58 E-value=1.3e+02 Score=31.82 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccCC---CchhHHHH-----HHHHHHHHHHcCCHHHHHHHHhhhhhhhccccceeeCC
Q 020138 60 QMIIGVIWKRINDTG---KNWRHVYK-----ALTVLEYLVAHGSERVIDDIREHSYQISTLSDFQYIDS 120 (330)
Q Consensus 60 ~~Im~vLwKRL~~~g---k~WR~VyK-----aL~LLEYLLkNGSErvV~e~r~h~~~I~~L~~Fqy~D~ 120 (330)
.++.+.+.-.|...+ +.||.+|+ ++.||.||+.+=.+--.. ++. .+-++|+.|+..++
T Consensus 167 ~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~K-L~k--~l~~Tl~sfr~~Ne 232 (469)
T PF10151_consen 167 KELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKK-LSK--SLKETLKSFRLKNE 232 (469)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHH-HHH--HHHHHHHHHHHhHH
Confidence 566677777776543 68998887 689999999874332211 121 34467777877653
No 48
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=22.42 E-value=1.6e+02 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q 020138 128 NVRKKSQSLVALVNDKERIIEVRQKAAAN 156 (330)
Q Consensus 128 nVR~KAk~Il~LL~D~e~L~eER~kA~kn 156 (330)
++.+-+..|..||+||+..++..+++.+.
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 78889999999999999888887777654
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=22.17 E-value=1.3e+02 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHh
Q 020138 129 VRKKSQSLVALVNDKERIIEVRQKAAAN 156 (330)
Q Consensus 129 VR~KAk~Il~LL~D~e~L~eER~kA~kn 156 (330)
+-+.++.|..|++|++.+++.++.+.+.
T Consensus 316 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 316 AEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 7788999999999999998888776553
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.85 E-value=5e+02 Score=22.84 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHHhcChhh-HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 020138 46 LADIAQATRNYHE-YQMIIGVIWKRINDTGKNWRHVYKALTVLEYLVAHGSERVID 100 (330)
Q Consensus 46 L~EIA~~Tyn~~~-y~~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkNGSErvV~ 100 (330)
+--++.++..+.. ....+..|.++|.+....-| .-||.+|-+|+.+|-..+-.
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR--~~al~~Ls~Li~~d~ik~k~ 62 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVR--KTALLVLSHLILEDMIKVKG 62 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHcCceeehh
Confidence 3344555544333 34467788899988754444 46999999999998765443
No 51
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=21.77 E-value=3.9e+02 Score=29.88 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHHHhcc--CCCchhHHHHHH-HHHHHHHHcCCH--HHHHHHHhhhhhhhcccc
Q 020138 40 GPHGTLLADIAQATRNYHEYQMIIGVIWKRIND--TGKNWRHVYKAL-TVLEYLVAHGSE--RVIDDIREHSYQISTLSD 114 (330)
Q Consensus 40 GPt~s~L~EIA~~Tyn~~~y~~Im~vLwKRL~~--~gk~WR~VyKaL-~LLEYLLkNGSE--rvV~e~r~h~~~I~~L~~ 114 (330)
.-+.+.++++-..-+...--..+..++-+-|.- .+..--+|+|-| +.++|++.+-+| ++|+-+-.|+ |+-
T Consensus 25 aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~--lRg--- 99 (885)
T COG5218 25 AGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHL--LRG--- 99 (885)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHH--Hhc---
Confidence 335566666666554433334455555555543 245556666655 478899999876 6777665553 222
Q ss_pred ceeeCCCCCccchhHHHHHHHHHHhhcCH
Q 020138 115 FQYIDSSGRDQGSNVRKKSQSLVALVNDK 143 (330)
Q Consensus 115 Fqy~D~~GkD~G~nVR~KAk~Il~LL~D~ 143 (330)
.+. + -.+||.++-+|+.+|.|-
T Consensus 100 ---~es--k--dk~VR~r~lqila~~~d~ 121 (885)
T COG5218 100 ---TES--K--DKKVRKRSLQILALLSDV 121 (885)
T ss_pred ---ccC--c--chhHHHHHHHHHHHHHHh
Confidence 232 2 358999999999999873
No 52
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.94 E-value=1.1e+02 Score=22.99 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=33.8
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHc-------CCHHHHHHHHh
Q 020138 61 MIIGVIWKRINDTGKNWRHVYKALTVLEYLVAH-------GSERVIDDIRE 104 (330)
Q Consensus 61 ~Im~vLwKRL~~~gk~WR~VyKaL~LLEYLLkN-------GSErvV~e~r~ 104 (330)
-++..+.++++-++++--.+++-..+++||..+ |.+.+|+++-+
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~~~~~~~i~~~Yd~lHt~s~~yivedi~~ 56 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKRSGVIDYIIDCYDVLHTQSDEYIVEDIIE 56 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCcHHHHHHcchHHHHCcHHHHHHHHHH
Confidence 367778888888888888888888899988876 55666666543
No 53
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.53 E-value=1.3e+02 Score=34.05 Aligned_cols=27 Identities=52% Similarity=0.818 Sum_probs=20.6
Q ss_pred CCCCCccCccchhcccCCCCCCCCCCCC
Q 020138 225 SRDGDRYGRDYEDRYSRDVYRDDDYRGR 252 (330)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 252 (330)
++.+++..|+ -||||-++.|||+++.+
T Consensus 776 ~~~g~~g~~~-Rer~G~~~~Rd~~~Rd~ 802 (894)
T KOG0132|consen 776 RRQGDRGARD-RERYGNDDRRDDSNRDR 802 (894)
T ss_pred cccccccchh-hhhhcCCcccccccccc
Confidence 5566666666 67899999999999843
No 54
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.35 E-value=1.3e+02 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhhcCHHHHHHHHHHHHHhhhhh
Q 020138 128 NVRKKSQSLVALVNDKERIIEVRQKAAANRDKF 160 (330)
Q Consensus 128 nVR~KAk~Il~LL~D~e~L~eER~kA~knR~Ky 160 (330)
++.+-++.|.+|++|++.+++..+.+.+...+|
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 350 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEAERR 350 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhc
Confidence 456689999999999999988888877754333
No 55
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=20.20 E-value=64 Score=32.23 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHcCC-HHHHHHHHhhhhhhhccccceee
Q 020138 88 EYLVAHGS-ERVIDDIREHSYQISTLSDFQYI 118 (330)
Q Consensus 88 EYLLkNGS-ErvV~e~r~h~~~I~~L~~Fqy~ 118 (330)
-|||.||. -++|.++-.|.. |.+.+-|+++
T Consensus 254 THLL~~GADlRvVQeLLGHad-isTTQIYTHV 284 (300)
T COG4974 254 THLLENGADLRVVQELLGHAD-ISTTQIYTHV 284 (300)
T ss_pred HHHHhCCccHHHHHHHhCccc-cchhHHHHHH
Confidence 58999996 599999999987 6677777666
Done!